Query 020048
Match_columns 332
No_of_seqs 172 out of 932
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:36:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3866 PelB Pectate lyase [Ca 100.0 7E-55 1.5E-59 411.1 23.3 241 70-315 33-303 (345)
2 PF00544 Pec_lyase_C: Pectate 100.0 4.6E-51 9.9E-56 371.4 13.7 177 112-289 3-200 (200)
3 smart00656 Amb_all Amb_all dom 100.0 2.8E-47 6E-52 344.2 20.9 168 124-292 10-189 (190)
4 TIGR03805 beta_helix_1 paralle 99.3 1.8E-10 3.9E-15 111.9 22.2 215 100-325 1-288 (314)
5 PF14592 Chondroitinas_B: Chon 99.1 1.3E-09 2.9E-14 109.2 13.4 195 89-293 1-258 (425)
6 TIGR03808 RR_plus_rpt_1 twin-a 98.6 4.6E-06 9.9E-11 84.4 19.0 191 98-303 55-295 (455)
7 PF13229 Beta_helix: Right han 98.4 1.7E-05 3.6E-10 66.6 14.1 133 147-293 2-138 (158)
8 PF12708 Pectate_lyase_3: Pect 98.3 3.1E-05 6.7E-10 69.3 16.2 176 99-293 20-221 (225)
9 PLN02218 polygalacturonase ADP 98.3 1.6E-05 3.4E-10 80.8 15.7 103 149-255 219-323 (431)
10 TIGR03805 beta_helix_1 paralle 98.3 7.5E-05 1.6E-09 72.8 18.8 141 146-292 108-283 (314)
11 PLN02793 Probable polygalactur 98.3 2.8E-05 6.1E-10 79.2 15.8 103 148-254 203-307 (443)
12 PLN02218 polygalacturonase ADP 98.2 0.00027 5.9E-09 71.9 20.8 138 148-299 195-352 (431)
13 PLN03003 Probable polygalactur 98.2 0.00011 2.3E-09 75.2 17.7 103 149-255 165-269 (456)
14 PLN03010 polygalacturonase 98.1 0.00056 1.2E-08 69.1 20.6 92 153-247 188-281 (409)
15 PLN03003 Probable polygalactur 98.0 0.00045 9.8E-09 70.7 18.8 137 148-298 141-297 (456)
16 PF07602 DUF1565: Protein of u 98.0 0.00043 9.3E-09 65.6 17.1 186 99-291 17-241 (246)
17 PLN02188 polygalacturonase/gly 98.0 8.8E-05 1.9E-09 74.8 13.1 97 149-248 182-280 (404)
18 PLN02480 Probable pectinestera 98.0 0.00019 4.1E-09 71.0 15.0 103 93-198 53-182 (343)
19 PLN02155 polygalacturonase 98.0 7.2E-05 1.6E-09 75.2 12.2 97 149-248 172-270 (394)
20 PF01696 Adeno_E1B_55K: Adenov 97.9 0.00081 1.8E-08 67.2 17.6 184 85-294 47-242 (386)
21 PLN02793 Probable polygalactur 97.9 0.0026 5.6E-08 65.0 21.1 137 148-298 180-336 (443)
22 PLN02155 polygalacturonase 97.8 0.00063 1.4E-08 68.5 16.1 137 148-298 148-305 (394)
23 PF05048 NosD: Periplasmic cop 97.8 0.00097 2.1E-08 61.4 15.2 130 145-290 35-166 (236)
24 PF00295 Glyco_hydro_28: Glyco 97.8 9.6E-05 2.1E-09 72.2 9.0 105 147-255 117-223 (326)
25 PF13229 Beta_helix: Right han 97.8 0.00028 6.1E-09 59.0 10.7 116 172-298 1-118 (158)
26 PLN03010 polygalacturonase 97.8 0.0021 4.6E-08 65.0 18.5 171 112-297 107-315 (409)
27 PF05048 NosD: Periplasmic cop 97.7 0.0015 3.3E-08 60.1 15.9 109 146-270 58-168 (236)
28 PLN02188 polygalacturonase/gly 97.7 0.0019 4.1E-08 65.3 16.8 138 148-299 158-317 (404)
29 PF00295 Glyco_hydro_28: Glyco 97.6 0.0017 3.7E-08 63.5 15.4 134 148-297 95-250 (326)
30 TIGR03808 RR_plus_rpt_1 twin-a 97.6 0.0015 3.3E-08 66.5 14.9 70 130-200 115-208 (455)
31 PLN02176 putative pectinestera 97.6 0.0019 4.2E-08 63.8 14.8 103 93-198 44-173 (340)
32 PLN02197 pectinesterase 97.6 0.0033 7.2E-08 66.3 17.2 175 71-248 258-481 (588)
33 COG3420 NosD Nitrous oxidase a 97.5 0.0052 1.1E-07 60.6 16.5 167 116-291 39-236 (408)
34 PLN02304 probable pectinestera 97.4 0.014 3.1E-07 58.5 18.9 103 94-199 81-213 (379)
35 PLN02432 putative pectinestera 97.4 0.008 1.7E-07 58.4 15.8 98 98-198 24-138 (293)
36 PLN02497 probable pectinestera 97.3 0.025 5.4E-07 55.9 18.3 98 98-198 45-167 (331)
37 PLN02682 pectinesterase family 97.2 0.041 8.8E-07 55.1 19.3 99 98-199 83-214 (369)
38 PLN02170 probable pectinestera 97.1 0.04 8.8E-07 57.5 18.9 196 93-293 230-482 (529)
39 PLN02217 probable pectinestera 97.1 0.026 5.6E-07 60.5 17.5 151 93-247 255-452 (670)
40 PLN02416 probable pectinestera 97.1 0.01 2.3E-07 62.1 14.1 196 93-292 235-495 (541)
41 PLN02665 pectinesterase family 97.0 0.072 1.6E-06 53.3 18.8 99 98-199 81-205 (366)
42 PLN03043 Probable pectinestera 97.0 0.046 9.9E-07 57.3 17.9 190 98-292 236-491 (538)
43 smart00656 Amb_all Amb_all dom 97.0 0.017 3.7E-07 52.5 13.1 132 130-269 45-189 (190)
44 PLN02773 pectinesterase 96.9 0.039 8.4E-07 54.2 15.8 146 98-247 18-212 (317)
45 PLN02708 Probable pectinestera 96.9 0.0081 1.8E-07 63.0 11.1 120 93-215 246-409 (553)
46 PF01095 Pectinesterase: Pecti 96.9 0.05 1.1E-06 52.9 15.8 110 98-215 13-146 (298)
47 PLN02933 Probable pectinestera 96.8 0.026 5.7E-07 58.9 14.5 152 92-247 222-420 (530)
48 PLN02995 Probable pectinestera 96.8 0.025 5.4E-07 59.3 14.4 151 93-247 228-427 (539)
49 PLN02634 probable pectinestera 96.8 0.038 8.2E-07 55.2 14.7 97 99-198 70-199 (359)
50 PLN02301 pectinesterase/pectin 96.8 0.028 6.1E-07 59.0 14.0 151 93-247 241-438 (548)
51 PLN02488 probable pectinestera 96.8 0.033 7.3E-07 57.8 14.3 153 93-249 202-401 (509)
52 PLN02201 probable pectinestera 96.7 0.034 7.3E-07 58.0 14.4 151 93-247 211-408 (520)
53 PLN02506 putative pectinestera 96.7 0.067 1.5E-06 56.1 16.6 191 98-293 245-489 (537)
54 PLN02314 pectinesterase 96.7 0.034 7.3E-07 58.8 13.8 172 93-268 283-508 (586)
55 PLN02990 Probable pectinestera 96.6 0.049 1.1E-06 57.5 14.8 152 93-248 264-463 (572)
56 PLN02468 putative pectinestera 96.6 0.017 3.8E-07 60.8 11.3 194 95-293 265-520 (565)
57 PLN02713 Probable pectinestera 96.6 0.042 9E-07 58.0 14.0 150 93-248 255-456 (566)
58 PLN02745 Putative pectinestera 96.6 0.045 9.8E-07 58.0 14.2 152 93-248 290-488 (596)
59 PLN02313 Pectinesterase/pectin 96.6 0.015 3.2E-07 61.5 10.4 148 94-247 281-477 (587)
60 COG5434 PGU1 Endopygalactoruna 96.5 0.033 7.2E-07 58.3 12.7 114 130-254 247-375 (542)
61 PLN02671 pectinesterase 96.4 0.12 2.5E-06 51.8 14.8 97 98-199 72-204 (359)
62 PLN02484 probable pectinestera 96.2 0.085 1.8E-06 55.9 13.8 151 93-247 277-475 (587)
63 PRK10531 acyl-CoA thioesterase 96.1 0.25 5.4E-06 50.4 15.9 111 85-199 80-256 (422)
64 PLN02916 pectinesterase family 96.1 0.13 2.7E-06 53.6 13.9 146 98-247 200-392 (502)
65 PF00544 Pec_lyase_C: Pectate 95.8 0.059 1.3E-06 49.3 9.3 127 131-266 52-200 (200)
66 COG3866 PelB Pectate lyase [Ca 95.7 0.29 6.3E-06 47.9 13.5 140 148-294 95-253 (345)
67 PF12708 Pectate_lyase_3: Pect 95.5 0.051 1.1E-06 48.4 7.4 34 131-166 98-133 (225)
68 COG3420 NosD Nitrous oxidase a 95.4 0.37 8.1E-06 47.9 13.5 132 125-274 99-242 (408)
69 PF08480 Disaggr_assoc: Disagg 93.3 0.36 7.8E-06 44.1 7.6 116 205-321 2-144 (198)
70 COG5434 PGU1 Endopygalactoruna 93.0 0.43 9.3E-06 50.2 8.7 134 107-247 236-398 (542)
71 PF14592 Chondroitinas_B: Chon 92.0 0.49 1.1E-05 48.3 7.4 118 170-297 183-327 (425)
72 COG4677 PemB Pectin methyleste 88.9 6.2 0.00013 39.3 11.6 146 98-255 95-294 (405)
73 PF12541 DUF3737: Protein of u 84.4 13 0.00027 36.0 10.8 97 151-269 115-225 (277)
74 PF12541 DUF3737: Protein of u 80.5 15 0.00032 35.6 9.7 63 152-226 17-79 (277)
75 PLN02698 Probable pectinestera 75.1 26 0.00056 36.7 10.5 100 147-248 264-386 (497)
76 PF03211 Pectate_lyase: Pectat 71.8 26 0.00057 32.8 8.7 54 156-215 63-116 (215)
77 TIGR03804 para_beta_helix para 63.7 14 0.00031 24.9 4.0 39 174-215 2-40 (44)
78 PF08480 Disaggr_assoc: Disagg 62.8 83 0.0018 29.1 9.8 92 179-270 32-144 (198)
79 PF01696 Adeno_E1B_55K: Adenov 46.7 57 0.0012 33.2 6.7 77 205-291 121-199 (386)
80 TIGR03804 para_beta_helix para 42.4 61 0.0013 21.7 4.4 41 147-192 1-41 (44)
81 PF07602 DUF1565: Protein of u 42.1 2.1E+02 0.0045 27.3 9.4 87 129-222 96-193 (246)
82 KOG1924 RhoA GTPase effector D 40.6 27 0.00059 38.6 3.4 9 51-59 606-614 (1102)
83 COG5178 PRP8 U5 snRNP spliceos 29.2 36 0.00078 39.4 2.2 20 85-104 73-93 (2365)
84 smart00710 PbH1 Parallel beta- 28.2 87 0.0019 17.4 2.9 14 182-195 3-16 (26)
85 PF03718 Glyco_hydro_49: Glyco 22.2 4.4E+02 0.0095 28.3 8.4 64 147-216 345-412 (582)
86 PRK03174 sspH acid-soluble spo 20.1 80 0.0017 23.7 2.0 17 173-189 15-31 (59)
No 1
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7e-55 Score=411.12 Aligned_cols=241 Identities=34% Similarity=0.534 Sum_probs=211.7
Q ss_pred CcccccC-------CCcCCCCCceEEecCCCCCCChhHHHhhhcCCCeEEEEeeceEEEec------ceeEeccCcceee
Q 020048 70 QAEGFGR-------LAIGGLHGPLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLR------SHLSVSSYKTIDG 136 (332)
Q Consensus 70 ~aeGfg~-------~ttGG~gG~v~~VTnl~dsG~GSLr~Al~~~~Pr~IVF~VsGtI~L~------~~l~V~snkTI~G 136 (332)
+.+|||+ +||||.||++++|+|.+| |..++.+.+|.++|+-|.|+|+++ ..|++.+||||.|
T Consensus 33 ~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG 107 (345)
T COG3866 33 SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVG 107 (345)
T ss_pred cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEe
Confidence 4788886 589999999999999999 999999999997777799999998 4577789999999
Q ss_pred eccceEEeCCcEEEeeeccEEEeeeEEeCCCCCCC--CceEEcCCCceEEEEceeeec--------CCCCceEeecCCcc
Q 020048 137 RGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDV--DAIQIKPKSKHIWIDRCSLRD--------YDDGLIDITRESTD 206 (332)
Q Consensus 137 ~G~gitI~G~gi~i~~a~NVIIRnL~ir~g~~~~~--DaI~i~~~s~nVwIDHcs~s~--------~~Dg~idi~~~s~n 206 (332)
.|..++|.|++|.|+.+.|||||||+|++....|. |+|+|...++|||||||+|+. ..||++|+++++++
T Consensus 108 ~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~Any 187 (345)
T COG3866 108 SGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANY 187 (345)
T ss_pred eccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcE
Confidence 99999999999999999999999999998654444 999997689999999999998 68999999999999
Q ss_pred EEEeCceeccCCceeeecCCCCC-CCCcceeEEEeceeecCCCCcCCccccCeEEEEcceEEcCccceEEEccC--ceEE
Q 020048 207 ITVSRCHFSSHDKTMLIGADPSH-VADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVD--SQIY 283 (332)
Q Consensus 207 VTIS~n~f~~h~k~~LiG~~d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~--a~v~ 283 (332)
||||||+|++|+|++|+|++|+. .+|++.+||+|||||+|+.+|+||+|+|.+|+|||||.+...+++..+++ |+++
T Consensus 188 ITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~Akiy 267 (345)
T COG3866 188 ITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIY 267 (345)
T ss_pred EEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEE
Confidence 99999999999999999999875 45677899999999999999999999999999999999777666666666 9999
Q ss_pred EEceEEecCCceeeeeehhcc---cc-CceeEEeee
Q 020048 284 SQCNIYEAGQKKMAFKYLTEK---VS-VLSIFFFSI 315 (332)
Q Consensus 284 ~egNyf~~g~~~~~~~~~~~~---~~-~~~~~~~~~ 315 (332)
+|+|||++...+..|-+.... +. |...|+.++
T Consensus 268 vE~NyF~~~~~~~~f~dt~~~~GY~~~d~gsy~~~s 303 (345)
T COG3866 268 VENNYFENGSEGLGFLDTKGTSGYANQDSGSYLNSS 303 (345)
T ss_pred EecceeccCCCCceeeecCCccceEEeccCceeccc
Confidence 999999999888755443333 33 666777555
No 2
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=100.00 E-value=4.6e-51 Score=371.44 Aligned_cols=177 Identities=46% Similarity=0.750 Sum_probs=158.0
Q ss_pred EEEeeceEEEecceeEeccCcceeeeccceEEeCCcEEEe-eeccEEEeeeEEeCC----------C--CCCCCceEEcC
Q 020048 112 IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLK-ECEHVIICNLEFEGG----------K--GPDVDAIQIKP 178 (332)
Q Consensus 112 IVF~VsGtI~L~~~l~V~snkTI~G~G~gitI~G~gi~i~-~a~NVIIRnL~ir~g----------~--~~~~DaI~i~~ 178 (332)
+||+++|+|+++.+|+|+|||||+|+|.+++|.+.|+.+. +++|||||||+|+.. . ..+.|+|++.
T Consensus 3 ~ii~~~g~i~~~~~i~v~snkTi~G~g~~~~i~~~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~- 81 (200)
T PF00544_consen 3 LIIKVSGTIDLKSPISVGSNKTIIGIGAGATIIGGGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISID- 81 (200)
T ss_dssp EEEEEHHCCHHHCEEEEESSEEEEEETTTTEEESSEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEE-
T ss_pred EEEEEEeEEccCCeEEECCCcEEEEccCCeEEECceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEE-
Confidence 4677999999999999999999999999999999999997 899999999999982 1 2478999998
Q ss_pred CCceEEEEceeeecC--------CCCceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCCCCc
Q 020048 179 KSKHIWIDRCSLRDY--------DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQR 250 (332)
Q Consensus 179 ~s~nVwIDHcs~s~~--------~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R 250 (332)
+++|||||||+|+|+ .|+++|++.++++||||||+|++|.|++|+|+++....+.+++||||||||+++.+|
T Consensus 82 ~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R 161 (200)
T PF00544_consen 82 NSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSR 161 (200)
T ss_dssp STEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-
T ss_pred ecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCCceEEEEeEEECchhhC
Confidence 889999999999999 999999999999999999999999999999998777667779999999999999999
Q ss_pred CCccccCeEEEEcceEEcCccceEEEccCceEEEEceEE
Q 020048 251 HPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIY 289 (332)
Q Consensus 251 ~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~egNyf 289 (332)
+||+|+|++|++||||+++..|++++++++++++|+|||
T Consensus 162 ~P~~r~G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 162 NPRVRFGYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp TTEECSCEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred CCcccccEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 999999999999999999999999999999999999999
No 3
>smart00656 Amb_all Amb_all domain.
Probab=100.00 E-value=2.8e-47 Score=344.20 Aligned_cols=168 Identities=45% Similarity=0.699 Sum_probs=157.8
Q ss_pred ceeEeccCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC---CCCCceEEcCCCceEEEEceeeecC-------
Q 020048 124 SHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDY------- 193 (332)
Q Consensus 124 ~~l~V~snkTI~G~G~gitI~G~gi~i~~a~NVIIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~------- 193 (332)
.+|.|+|||||+|+|..++|.|.+|++.+++|||||||+|+++.. ++.|+|+++ ++++||||||+|+|.
T Consensus 10 ~~i~v~snkTI~G~~~~~~i~g~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~-~~~~VwIDHct~s~~~~~~~~~ 88 (190)
T smart00656 10 GTIIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSNVWIDHVSLSGCTVTGFGD 88 (190)
T ss_pred ceEEeCCCCEEEecCCCcEEEeeEEEEEecceEEEeCCEEECCccCCCCCCCEEEEe-CCCeEEEEccEeEcceeccCCC
Confidence 468999999999999989999999999889999999999998765 578999997 899999999999998
Q ss_pred --CCCceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCCCCcCCccccCeEEEEcceEEcCcc
Q 020048 194 --DDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGI 271 (332)
Q Consensus 194 --~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~ 271 (332)
.|+++|++.++++||||||+|++|.|++|||++++...++.++||||||||+++.+|+||+|+|++|++||||++|..
T Consensus 89 ~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r~g~~hv~NN~~~n~~~ 168 (190)
T smart00656 89 DTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTS 168 (190)
T ss_pred CCCCccEEECcccccEEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCcccCCCcccCCEEEEEeeEEeCccc
Confidence 899999999999999999999999999999998876555578999999999999999999999999999999999998
Q ss_pred ceEEEccCceEEEEceEEecC
Q 020048 272 YAVCASVDSQIYSQCNIYEAG 292 (332)
Q Consensus 272 ~ai~~~~~a~v~~egNyf~~g 292 (332)
|++++++++++++|+|||++.
T Consensus 169 ~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 169 YAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred EeEecCCCcEEEEECeEEECC
Confidence 999999999999999999975
No 4
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.35 E-value=1.8e-10 Score=111.87 Aligned_cols=215 Identities=16% Similarity=0.172 Sum_probs=120.9
Q ss_pred HHHhhhcCCCeEEEEeeceEEEecceeEec-cCcceeeeccc-eEEe-------CCcEEEeeeccEEEeeeEEeCCCC--
Q 020048 100 LREGCRMKEPLWIVFEVSGTIHLRSHLSVS-SYKTIDGRGQR-VKLT-------GKGLRLKECEHVIICNLEFEGGKG-- 168 (332)
Q Consensus 100 Lr~Al~~~~Pr~IVF~VsGtI~L~~~l~V~-snkTI~G~G~g-itI~-------G~gi~i~~a~NVIIRnL~ir~g~~-- 168 (332)
|++|+++..|..+|+--.|+..+++.|.|. +++||.|.|.. ..|. +.+|.+ .++||.|++|+++....
T Consensus 1 iQ~Ai~~A~~GDtI~l~~G~Y~~~~~l~I~~~~Iti~G~g~~~tvid~~~~~~~~~~i~v-~a~~VtI~~ltI~~~~~~G 79 (314)
T TIGR03805 1 LQEALIAAQPGDTIVLPEGVFQFDRTLSLDADGVTIRGAGMDETILDFSGQVGGAEGLLV-TSDDVTLSDLAVENTKGDG 79 (314)
T ss_pred CHhHHhhCCCCCEEEECCCEEEcceeEEEeCCCeEEEecCCCccEEecccCCCCCceEEE-EeCCeEEEeeEEEcCCCCe
Confidence 688999988886666678999988889997 89999998653 4443 233555 36777777777765321
Q ss_pred -------------------------CCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeee
Q 020048 169 -------------------------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLI 223 (332)
Q Consensus 169 -------------------------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~Li 223 (332)
...+||.+. .++++.|++|.++...|-.|-+ ..+++++|++|.+.+..++..+
T Consensus 80 I~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~-~s~~v~I~~n~i~g~~d~GIyv-~~s~~~~v~nN~~~~n~~GI~i 157 (314)
T TIGR03805 80 VKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPV-ESTNVLVEDSYVRGASDAGIYV-GQSQNIVVRNNVAEENVAGIEI 157 (314)
T ss_pred EEEeCCCCEEEEeeEEEeccCccccCCcceEEEe-ccCCEEEECCEEECCCcccEEE-CCCCCeEEECCEEccCcceEEE
Confidence 112344443 3444455555554444422333 2344555555555444444333
Q ss_pred cCCCCCCCCcceeEEEeceeecCCCCcC--------CccccCeEEEEcceEEcCcc----------------ceEEEccC
Q 020048 224 GADPSHVADRCIRVTIHHCFFDGTRQRH--------PRVRYAKVHLYNNYTRNWGI----------------YAVCASVD 279 (332)
Q Consensus 224 G~~d~~~~d~~~~VT~hhNlf~~~~~R~--------Pr~r~G~~hv~NN~~~n~~~----------------~ai~~~~~ 279 (332)
-.+ .++.+.+|.+.++..-- |.+....+.++||.+.+... .++-....
T Consensus 158 ~~S--------~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~ 229 (314)
T TIGR03805 158 ENS--------QNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMAN 229 (314)
T ss_pred Eec--------CCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcc
Confidence 222 13455566555443211 11222356777777764321 12222233
Q ss_pred ceEEEEceEEecCCcee--eeeehhc----ccc-------CceeEEeeeccccCCCceE
Q 020048 280 SQIYSQCNIYEAGQKKM--AFKYLTE----KVS-------VLSIFFFSIPFLNQSSRFF 325 (332)
Q Consensus 280 a~v~~egNyf~~g~~~~--~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~ 325 (332)
.++.+++|.|......- ++.|... ... -..+++-.|.|.+...++-
T Consensus 230 ~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~N~~~~~g~~p~ 288 (314)
T TIGR03805 230 RDVEIFGNVISNNDTANVLISSYHSTGLPDQPPDDGFDPYPRNISIHDNTFSDGGTNPD 288 (314)
T ss_pred cceEEECCEEeCCcceeEEEEecccccCCCCCcCCCccCCCcceEEEccEeecCCCCCC
Confidence 57899999999876663 3444332 111 2567777887777666653
No 5
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=99.08 E-value=1.3e-09 Score=109.22 Aligned_cols=195 Identities=16% Similarity=0.237 Sum_probs=105.4
Q ss_pred ecCCCCCCChhHHHhhhcCCCeEEEEeeceEEEecceeEec------cCcceeee-ccceEEeCCc-EEEeeeccEEEee
Q 020048 89 VTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVS------SYKTIDGR-GQRVKLTGKG-LRLKECEHVIICN 160 (332)
Q Consensus 89 VTnl~dsG~GSLr~Al~~~~Pr~IVF~VsGtI~L~~~l~V~------snkTI~G~-G~gitI~G~g-i~i~~a~NVIIRn 160 (332)
|+|+++ |++||+...|...|+-..|+.+ ...|.+. ..+||..+ +.++.|.|.. |+|. ++.++|++
T Consensus 1 Vss~~~-----lq~Ai~~a~pGD~I~L~~Gty~-~~~i~~~~~GT~~~PItl~Ae~~G~vvi~G~s~l~i~-G~yl~v~G 73 (425)
T PF14592_consen 1 VSSVAE-----LQSAIDNAKPGDTIVLADGTYK-DVEIVFKGSGTAAKPITLRAENPGKVVITGESNLRIS-GSYLVVSG 73 (425)
T ss_dssp E-SHHH-----HHHHHHH--TT-EEEE-SEEEE-T-EEEE-S--BTTB-EEEEESSTTSEEEEES-EEEE--SSSEEEES
T ss_pred CCCHHH-----HHHHHHhCCCCCEEEECCceee-cceEEEEecccCCCCEEEEecCCCeEEEecceeEEEE-eeeEEEeC
Confidence 667776 9999999888776766899997 3456653 46899887 5578888864 7776 79999999
Q ss_pred eEEeCCCCCC--------------CCceEEc-----------------------CCCceEEEEceeeecC--CCCceEee
Q 020048 161 LEFEGGKGPD--------------VDAIQIK-----------------------PKSKHIWIDRCSLRDY--DDGLIDIT 201 (332)
Q Consensus 161 L~ir~g~~~~--------------~DaI~i~-----------------------~~s~nVwIDHcs~s~~--~Dg~idi~ 201 (332)
|.|+.+.... .+-.++. -.++|--||||.|..- ..-.+-+.
T Consensus 74 L~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~~~G~~l~V~ 153 (425)
T PF14592_consen 74 LKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNNPDREESDNWVTIYSLYGKHNRVDHNYFQGKTNRGPTLAVR 153 (425)
T ss_dssp -EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--SS-S-SEEE---TT-----S-EEES-EEE---SSS-SEEE-
T ss_pred eEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCCcccccCceEEEEEEeeccCceEEccEeeccccCCcEEEEE
Confidence 9998653110 0111110 0123444699999752 22233332
Q ss_pred -------cCCccEEEeCceecc-------CCceeeecCCCCCCCCcceeEEEeceeecCCCCcCCcc--ccCeEEEEcce
Q 020048 202 -------RESTDITVSRCHFSS-------HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRV--RYAKVHLYNNY 265 (332)
Q Consensus 202 -------~~s~nVTIS~n~f~~-------h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~--r~G~~hv~NN~ 265 (332)
....+-+|.+|+|.+ ...++-||.+.....+ -+.++.+|||.+|.+-.=-+ +-+...++||.
T Consensus 154 ~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~--s~t~Ve~NlFe~cdGE~EIISvKS~~N~ir~Nt 231 (425)
T PF14592_consen 154 VILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSD--SNTTVENNLFERCDGEVEIISVKSSDNTIRNNT 231 (425)
T ss_dssp -S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-------EEES-EEEEE-SSSEEEEEESBT-EEES-E
T ss_pred ecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccc--cceeeecchhhhcCCceeEEEeecCCceEeccE
Confidence 124577899999984 3345777776433222 37899999999999875444 34677889999
Q ss_pred EEcCccceEEEccCceEEEEceEEecCC
Q 020048 266 TRNWGIYAVCASVDSQIYSQCNIYEAGQ 293 (332)
Q Consensus 266 ~~n~~~~ai~~~~~a~v~~egNyf~~g~ 293 (332)
+++..+ ++..+.+-.-.+++|||....
T Consensus 232 f~es~G-~ltlRHGn~n~V~gN~FiGng 258 (425)
T PF14592_consen 232 FRESQG-SLTLRHGNRNTVEGNVFIGNG 258 (425)
T ss_dssp EES-SS-EEEEEE-SS-EEES-EEEE-S
T ss_pred EEeccc-eEEEecCCCceEeccEEecCC
Confidence 999876 777888888888999998654
No 6
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.58 E-value=4.6e-06 Score=84.43 Aligned_cols=191 Identities=17% Similarity=0.165 Sum_probs=118.0
Q ss_pred hhHHHhhhcCC-CeEEEEeeceEEEecceeEeccCcceeeeccceE---EeCCc-EE-EeeeccEEEeeeEEeCCCC---
Q 020048 98 GSLREGCRMKE-PLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVK---LTGKG-LR-LKECEHVIICNLEFEGGKG--- 168 (332)
Q Consensus 98 GSLr~Al~~~~-Pr~IVF~VsGtI~L~~~l~V~snkTI~G~G~git---I~G~g-i~-i~~a~NVIIRnL~ir~g~~--- 168 (332)
-.|++|+++.. +...|.-..|+. +..+|.+.+++||.|+. +++ |.|.+ +. -..++||.|++|+|++...
T Consensus 55 ~ALQaAIdaAa~gG~tV~Lp~G~Y-~~G~L~L~spltL~G~~-gAt~~vIdG~~~lIiai~A~nVTIsGLtIdGsG~dl~ 132 (455)
T TIGR03808 55 RALQRAIDEAARAQTPLALPPGVY-RTGPLRLPSGAQLIGVR-GATRLVFTGGPSLLSSEGADGIGLSGLTLDGGGIPLP 132 (455)
T ss_pred HHHHHHHHHhhcCCCEEEECCCce-ecccEEECCCcEEEecC-CcEEEEEcCCceEEEEecCCCeEEEeeEEEeCCCccc
Confidence 35999987643 333222357877 34789999999999994 454 66654 22 2369999999999997542
Q ss_pred CCCCceEEcCCCceEEEEceeeecCC-CCceEeecCCccEEEeCceeccCCc--eeeecCCCCCCCCcceeEEEeceeec
Q 020048 169 PDVDAIQIKPKSKHIWIDRCSLRDYD-DGLIDITRESTDITVSRCHFSSHDK--TMLIGADPSHVADRCIRVTIHHCFFD 245 (332)
Q Consensus 169 ~~~DaI~i~~~s~nVwIDHcs~s~~~-Dg~idi~~~s~nVTIS~n~f~~h~k--~~LiG~~d~~~~d~~~~VT~hhNlf~ 245 (332)
....+|.+. +++++-|.+|++.+.. .| +++. ++. ..|+.|.+....- -.||.+. .+.+.+|.+.
T Consensus 133 ~rdAgI~v~-~a~~v~Iedn~L~gsg~FG-I~L~-~~~-~~I~~N~I~g~~~~~I~lw~S~---------g~~V~~N~I~ 199 (455)
T TIGR03808 133 QRRGLIHCQ-GGRDVRITDCEITGSGGNG-IWLE-TVS-GDISGNTITQIAVTAIVSFDAL---------GLIVARNTII 199 (455)
T ss_pred CCCCEEEEc-cCCceEEEeeEEEcCCcce-EEEE-cCc-ceEecceEeccccceEEEeccC---------CCEEECCEEE
Confidence 234578885 8999999999999984 87 5663 455 6666666653211 1233333 2333344443
Q ss_pred CCCC------cC--------------------C----cc-------ccCeEEEEcceEEcCccceEEEccCceEEEEceE
Q 020048 246 GTRQ------RH--------------------P----RV-------RYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNI 288 (332)
Q Consensus 246 ~~~~------R~--------------------P----r~-------r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~egNy 288 (332)
++.. |. | .. +.+.+.+.+|.+.+...-++..-..+++.+.+|.
T Consensus 200 g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nsss~~~i~~N~ 279 (455)
T TIGR03808 200 GANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSASNIQITGNS 279 (455)
T ss_pred ccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcccCcEEECcE
Confidence 3333 22 0 00 1134566777777776447766666677777777
Q ss_pred EecCCc-eeeeeehhc
Q 020048 289 YEAGQK-KMAFKYLTE 303 (332)
Q Consensus 289 f~~g~~-~~~~~~~~~ 303 (332)
|..... ...+.|.-+
T Consensus 280 ~~~~R~~alhymfs~~ 295 (455)
T TIGR03808 280 VSDVREVALYSEFAFE 295 (455)
T ss_pred eeeeeeeEEEEEEeCC
Confidence 776555 344444433
No 7
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.35 E-value=1.7e-05 Score=66.55 Aligned_cols=133 Identities=18% Similarity=0.267 Sum_probs=86.5
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCC
Q 020048 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (332)
Q Consensus 147 gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~ 226 (332)
||.+.+..++.|++.+|+.. ..+||.+. ....+.|+.|+|.+...+ +.+. ...++++++|.|.+...+..+-..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~---~~~gi~~~-~~~~~~i~n~~i~~~~~g-i~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNN---GGDGIHVS-GSSNITIENCTISNGGYG-IYVS-GGSNVTISNNTISDNGSGIYVSGS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESS---SSECEEE--SSCESEEES-EEESSTTS-EEEE-CCES-EEES-EEES-SEEEECCS-
T ss_pred EEEEECCcCeEEeeeEEEeC---CCeEEEEE-cCCCeEEECeEEECCCcE-EEEe-cCCCeEEECeEEEEccceEEEEec
Confidence 57777788899999999875 45888886 666689999999994444 6663 458899999999877744433322
Q ss_pred CCCCCCcceeEEEeceeecCCCCcCCccc--cCeEEEEcceEEcCccceEEEccCc--eEEEEceEEecCC
Q 020048 227 PSHVADRCIRVTIHHCFFDGTRQRHPRVR--YAKVHLYNNYTRNWGIYAVCASVDS--QIYSQCNIYEAGQ 293 (332)
Q Consensus 227 d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r--~G~~hv~NN~~~n~~~~ai~~~~~a--~v~~egNyf~~g~ 293 (332)
..+++.+|.+.++..-.=.+. ...+.+.||.+.+....++...... .+.+++|.|....
T Consensus 76 --------~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~~~~~~~i~~n~i~~~~ 138 (158)
T PF13229_consen 76 --------SNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGGSSPNVTIENNTISNNG 138 (158)
T ss_dssp --------CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEECC--S-EEECEEEECES
T ss_pred --------CCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECCCCCeEEEEEEEEEeCc
Confidence 257888888877755433333 3457889998888876677666665 8888999998865
No 8
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=98.33 E-value=3.1e-05 Score=69.29 Aligned_cols=176 Identities=17% Similarity=0.225 Sum_probs=101.2
Q ss_pred hHHHhh--hcCCCeEEEEeeceEEEecceeEeccCcceeeeccce-EEe--CC--cE-------EEee-ecc--EEEeee
Q 020048 99 SLREGC--RMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRV-KLT--GK--GL-------RLKE-CEH--VIICNL 161 (332)
Q Consensus 99 SLr~Al--~~~~Pr~IVF~VsGtI~L~~~l~V~snkTI~G~G~gi-tI~--G~--gi-------~i~~-a~N--VIIRnL 161 (332)
.|++|| .+....-+|+-..|++.++++|.+.++++|.|.|... ++. +. .+ .+.. ..+ +-|+||
T Consensus 20 Aiq~Ai~~~~~~~g~~v~~P~G~Y~i~~~l~~~s~v~l~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nl 99 (225)
T PF12708_consen 20 AIQAAIDAAAAAGGGVVYFPPGTYRISGTLIIPSNVTLRGAGGNSTILFLSGSGDSFSVVPGIGVFDSGNSNIGIQIRNL 99 (225)
T ss_dssp HHHHHHHHHCSTTSEEEEE-SEEEEESS-EEE-TTEEEEESSTTTEEEEECTTTSTSCCEEEEEECCSCSCCEEEEEEEE
T ss_pred HHHHhhhhcccCCCeEEEEcCcEEEEeCCeEcCCCeEEEccCCCeeEEEecCcccccccccceeeeecCCCCceEEEEee
Confidence 499999 3334444555589999999999999999999997633 333 11 11 1111 122 349999
Q ss_pred EEeCCCCC---CCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeC------ceeccCCceeeecCCCCCCCC
Q 020048 162 EFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSR------CHFSSHDKTMLIGADPSHVAD 232 (332)
Q Consensus 162 ~ir~g~~~---~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~------n~f~~h~k~~LiG~~d~~~~d 232 (332)
+|...... ...+|.+. .++++||++|++.+.....+.+. ..+..++.. +.+++..+
T Consensus 100 ~i~~~~~~~~~~~~~i~~~-~~~~~~i~nv~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~------------- 164 (225)
T PF12708_consen 100 TIDGNGIDPNNNNNGIRFN-SSQNVSISNVRIENSGGDGIYFN-TGTDYRIIGSTHVSGIFIDNGSN------------- 164 (225)
T ss_dssp EEEETCGCE-SCEEEEEET-TEEEEEEEEEEEES-SS-SEEEE-CCEECEEECCEEEEEEEEESCEE-------------
T ss_pred EEEcccccCCCCceEEEEE-eCCeEEEEeEEEEccCccEEEEE-ccccCcEeecccceeeeecccee-------------
Confidence 99976532 24778886 78999999999998765556664 222222222 22222110
Q ss_pred cceeEEEeceeecCCCCcCCccccCeEEEEcceEEcCccceEEEccCceEEEEceEEecCC
Q 020048 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQ 293 (332)
Q Consensus 233 ~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~egNyf~~g~ 293 (332)
.+...+.++.....- .....-.+.+.||++.+....++....+..+.+++|.|++-.
T Consensus 165 ---~~~~~~~~~~~~~~g-~~~~~~~~~i~n~~~~~~~~~gi~i~~~~~~~i~n~~i~~~~ 221 (225)
T PF12708_consen 165 ---NVIVNNCIFNGGDNG-IILGNNNITISNNTFEGNCGNGINIEGGSNIIISNNTIENCD 221 (225)
T ss_dssp ---EEEEECEEEESSSCS-EECEEEEEEEECEEEESSSSESEEEEECSEEEEEEEEEESSS
T ss_pred ---EEEECCccccCCCce-eEeecceEEEEeEEECCccceeEEEECCeEEEEEeEEEECCc
Confidence 122222222221111 001112566778888775556887777778888888888754
No 9
>PLN02218 polygalacturonase ADPG
Probab=98.32 E-value=1.6e-05 Score=80.77 Aligned_cols=103 Identities=19% Similarity=0.332 Sum_probs=75.2
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCC
Q 020048 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d 227 (332)
.+..++||+|++|+|+... ....|||.+. .++||+|.+|.++.+.|- |.++.++.||+|++|.+. +.-+.-||+..
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~-ss~nV~I~n~~I~tGDDc-IaIksgs~nI~I~n~~c~-~GHGisIGS~g 295 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHIT-NTQNIRVSNSIIGTGDDC-ISIESGSQNVQINDITCG-PGHGISIGSLG 295 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeec-ccceEEEEccEEecCCce-EEecCCCceEEEEeEEEE-CCCCEEECcCC
Confidence 3446778888888887532 3467999997 899999999999988665 899989999999999985 33456788764
Q ss_pred CCC-CCcceeEEEeceeecCCCCcCCccc
Q 020048 228 SHV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (332)
Q Consensus 228 ~~~-~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (332)
... .+.-.+|++.++.|.++. +.=|++
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~-nGvRIK 323 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTD-NGVRIK 323 (431)
T ss_pred CCCCCceEEEEEEEccEEecCC-cceEEe
Confidence 322 122248999999887753 344443
No 10
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.28 E-value=7.5e-05 Score=72.77 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=95.3
Q ss_pred CcEEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecC
Q 020048 146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA 225 (332)
Q Consensus 146 ~gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~ 225 (332)
.||.+..++|++|++-++++. ..+||.+. .+++++|.+|.+.....| |.+. .+.++.|.+|.+.+...+.++-.
T Consensus 108 ~GI~~~~s~~v~I~~n~i~g~---~d~GIyv~-~s~~~~v~nN~~~~n~~G-I~i~-~S~~~~v~~N~~~~N~~Gi~v~~ 181 (314)
T TIGR03805 108 YGIYPVESTNVLVEDSYVRGA---SDAGIYVG-QSQNIVVRNNVAEENVAG-IEIE-NSQNADVYNNIATNNTGGILVFD 181 (314)
T ss_pred ceEEEeccCCEEEECCEEECC---CcccEEEC-CCCCeEEECCEEccCcce-EEEE-ecCCcEEECCEEeccceeEEEee
Confidence 356666677777777777654 34689997 789999999999988887 5553 47899999999998777776632
Q ss_pred CCCCCCCcceeEEEeceeecCCCCcCCcc-----------cc------CeEEEEcceEEcCccceEEEc-----------
Q 020048 226 DPSHVADRCIRVTIHHCFFDGTRQRHPRV-----------RY------AKVHLYNNYTRNWGIYAVCAS----------- 277 (332)
Q Consensus 226 ~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~-----------r~------G~~hv~NN~~~n~~~~ai~~~----------- 277 (332)
.+....-...++.+++|.|.++...+... +. -.+.++||.+.+....++...
T Consensus 182 ~p~~~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~~~~~~~~~~ 261 (314)
T TIGR03805 182 LPGLPQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSYHSTGLPDQP 261 (314)
T ss_pred cCCCCcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEecccccCCCCC
Confidence 22110001237999999998775543221 11 246899999998776555321
Q ss_pred c-------CceEEEEceEEecC
Q 020048 278 V-------DSQIYSQCNIYEAG 292 (332)
Q Consensus 278 ~-------~a~v~~egNyf~~g 292 (332)
. .-.+.+.+|.|.+.
T Consensus 262 ~~~~~~~~~~~v~i~~N~~~~~ 283 (314)
T TIGR03805 262 PDDGFDPYPRNISIHDNTFSDG 283 (314)
T ss_pred cCCCccCCCcceEEEccEeecC
Confidence 1 12577778888774
No 11
>PLN02793 Probable polygalacturonase
Probab=98.26 E-value=2.8e-05 Score=79.19 Aligned_cols=103 Identities=22% Similarity=0.353 Sum_probs=75.5
Q ss_pred EEEeeeccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCC
Q 020048 148 LRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~ 226 (332)
+.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|- +.++.++.||+|++|.+.. .-+.-||+.
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~-~s~nV~I~n~~I~~gDDc-Iaik~~s~nI~I~n~~c~~-GhGisIGSl 279 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHIS-ASRGVVIKDSIVRTGDDC-ISIVGNSSRIKIRNIACGP-GHGISIGSL 279 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeee-ccceEEEEeCEEeCCCCe-EEecCCcCCEEEEEeEEeC-CccEEEecc
Confidence 44456778888888887643 3567999997 899999999999987666 8898889999999998853 335678875
Q ss_pred CCC-CCCcceeEEEeceeecCCCCcCCcc
Q 020048 227 PSH-VADRCIRVTIHHCFFDGTRQRHPRV 254 (332)
Q Consensus 227 d~~-~~d~~~~VT~hhNlf~~~~~R~Pr~ 254 (332)
... ....-.+|++.++.|.++. +.=|+
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~-~GirI 307 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTD-NGVRI 307 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCC-ceEEE
Confidence 322 1112248999999988764 34444
No 12
>PLN02218 polygalacturonase ADPG
Probab=98.17 E-value=0.00027 Score=71.87 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=95.9
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec-----CCCCceEeecCCccEEEeCceeccCCceee
Q 020048 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~idi~~~s~nVTIS~n~f~~h~k~~L 222 (332)
|++.+++||.|++|+++....+ .|.+. .+++|+|++.++.. ..|| ||+ ..+.+|+|++|.|..-+-...
T Consensus 195 i~f~~~~nv~I~gitl~nSp~w---~i~~~-~~~nV~i~~v~I~a~~~spNTDG-Idi-~ss~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 195 LTFYNSKSLIVKNLRVRNAQQI---QISIE-KCSNVQVSNVVVTAPADSPNTDG-IHI-TNTQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEccccEEEeCeEEEcCCCE---EEEEE-ceeeEEEEEEEEeCCCCCCCCCc-Eee-cccceEEEEccEEecCCceEE
Confidence 5667899999999999987543 46665 78999999999864 5788 899 568999999999998777777
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC-------cCCcc-ccCeEEEEcceEEcCccceEEE-----c--cCceEEEEce
Q 020048 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNWGIYAVCA-----S--VDSQIYSQCN 287 (332)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~ai~~-----~--~~a~v~~egN 287 (332)
|.++. .+|++.++++....+ +.+.- ..-.+++.|+.+.+.. +++.. + .-..|.+++.
T Consensus 269 Iksgs-------~nI~I~n~~c~~GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-nGvRIKT~~Gg~G~v~nI~f~ni 340 (431)
T PLN02218 269 IESGS-------QNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTD-NGVRIKTYQGGSGTASNIIFQNI 340 (431)
T ss_pred ecCCC-------ceEEEEeEEEECCCCEEECcCCCCCCCceEEEEEEEccEEecCC-cceEEeecCCCCeEEEEEEEEeE
Confidence 76542 278888887743221 11100 0014567777776654 34422 1 1237899999
Q ss_pred EEecCCceeeee
Q 020048 288 IYEAGQKKMAFK 299 (332)
Q Consensus 288 yf~~g~~~~~~~ 299 (332)
..++...|++++
T Consensus 341 ~m~~V~~pI~Id 352 (431)
T PLN02218 341 QMENVKNPIIID 352 (431)
T ss_pred EEEcccccEEEE
Confidence 999988886543
No 13
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.16 E-value=0.00011 Score=75.20 Aligned_cols=103 Identities=24% Similarity=0.450 Sum_probs=74.5
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCC
Q 020048 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d 227 (332)
.+..++||.|++|+|.... ....|||.+. .++||+|.+|.++.+.|- |.++.++.||+|++|.... .-+.-||+..
T Consensus 165 ~i~~c~nV~i~~l~I~ap~~spNTDGIDi~-~S~nV~I~n~~I~tGDDC-Iaiksgs~NI~I~n~~c~~-GHGISIGSlg 241 (456)
T PLN03003 165 HISECNYVTISSLRINAPESSPNTDGIDVG-ASSNVVIQDCIIATGDDC-IAINSGTSNIHISGIDCGP-GHGISIGSLG 241 (456)
T ss_pred EEeccccEEEEEEEEeCCCCCCCCCcEeec-CcceEEEEecEEecCCCe-EEeCCCCccEEEEeeEEEC-CCCeEEeecc
Confidence 3345667777777776543 3467999997 899999999999988776 8999889999999998863 3467788764
Q ss_pred CCC-CCcceeEEEeceeecCCCCcCCccc
Q 020048 228 SHV-ADRCIRVTIHHCFFDGTRQRHPRVR 255 (332)
Q Consensus 228 ~~~-~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (332)
... .+.-.+|++.++.|.++. +.=|++
T Consensus 242 ~~g~~~~V~NV~v~n~~~~~T~-nGvRIK 269 (456)
T PLN03003 242 KDGETATVENVCVQNCNFRGTM-NGARIK 269 (456)
T ss_pred CCCCcceEEEEEEEeeEEECCC-cEEEEE
Confidence 321 122348999999998763 333553
No 14
>PLN03010 polygalacturonase
Probab=98.08 E-value=0.00056 Score=69.14 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=60.1
Q ss_pred eccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCCCCC-
Q 020048 153 CEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHV- 230 (332)
Q Consensus 153 a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~- 230 (332)
++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|- |.++.++++++|.++... ..-+.-||+.....
T Consensus 188 ~~nv~i~~i~I~a~~~s~NTDGiDi~-~s~nV~I~n~~I~~gDDc-Iaiksgs~ni~I~~~~C~-~gHGisIGS~g~~~~ 264 (409)
T PLN03010 188 CNYVAISKINILAPETSPNTDGIDIS-YSTNINIFDSTIQTGDDC-IAINSGSSNINITQINCG-PGHGISVGSLGADGA 264 (409)
T ss_pred cccEEEEEEEEeCCCCCCCCCceeee-ccceEEEEeeEEecCCCe-EEecCCCCcEEEEEEEeE-CcCCEEEccCCCCCC
Confidence 444444444444322 2457999996 789999999999888665 899888777777755543 22256677753321
Q ss_pred CCcceeEEEeceeecCC
Q 020048 231 ADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 231 ~d~~~~VT~hhNlf~~~ 247 (332)
.+.-.+|++.++.|.++
T Consensus 265 ~~~V~nV~v~n~~i~~t 281 (409)
T PLN03010 265 NAKVSDVHVTHCTFNQT 281 (409)
T ss_pred CCeeEEEEEEeeEEeCC
Confidence 11124889999988775
No 15
>PLN03003 Probable polygalacturonase At3g15720
Probab=98.01 E-value=0.00045 Score=70.66 Aligned_cols=137 Identities=14% Similarity=0.200 Sum_probs=93.1
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec-----CCCCceEeecCCccEEEeCceeccCCceee
Q 020048 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~idi~~~s~nVTIS~n~f~~h~k~~L 222 (332)
|++..++||.|++|+++....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-...
T Consensus 141 l~f~~~~nv~I~gitl~NSp~w---~i~i~-~c~nV~i~~l~I~ap~~spNTDG-IDi-~~S~nV~I~n~~I~tGDDCIa 214 (456)
T PLN03003 141 LKFRSCNNLRLSGLTHLDSPMA---HIHIS-ECNYVTISSLRINAPESSPNTDG-IDV-GASSNVVIQDCIIATGDDCIA 214 (456)
T ss_pred EEEEecCCcEEeCeEEecCCcE---EEEEe-ccccEEEEEEEEeCCCCCCCCCc-Eee-cCcceEEEEecEEecCCCeEE
Confidence 6778899999999999986432 35665 78999999999864 5788 899 578999999999998887777
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCC-------CcCCcc-ccCeEEEEcceEEcCccceEEE-----c--cCceEEEEce
Q 020048 223 IGADPSHVADRCIRVTIHHCFFDGTR-------QRHPRV-RYAKVHLYNNYTRNWGIYAVCA-----S--VDSQIYSQCN 287 (332)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~-------~R~Pr~-r~G~~hv~NN~~~n~~~~ai~~-----~--~~a~v~~egN 287 (332)
+.++. .+|++-++.+.... .+.... ..-.+++.|+.+.+.. .++.. + .-..|.+|+-
T Consensus 215 iksgs-------~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~-nGvRIKT~~Gg~G~v~nItf~nI 286 (456)
T PLN03003 215 INSGT-------SNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTM-NGARIKTWQGGSGYARMITFNGI 286 (456)
T ss_pred eCCCC-------ccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCC-cEEEEEEeCCCCeEEEEEEEEeE
Confidence 76542 25666666553221 111000 0124678888887753 24432 1 1136788888
Q ss_pred EEecCCceeee
Q 020048 288 IYEAGQKKMAF 298 (332)
Q Consensus 288 yf~~g~~~~~~ 298 (332)
..++...|+++
T Consensus 287 ~m~nV~~pI~I 297 (456)
T PLN03003 287 TLDNVENPIII 297 (456)
T ss_pred EecCccceEEE
Confidence 88877777643
No 16
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.00 E-value=0.00043 Score=65.57 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=107.7
Q ss_pred hHHHhhhcCCCeEEEEeeceEEEecc----eeEeccCcceeee----cc----------ceEEeCCc-------EEEeee
Q 020048 99 SLREGCRMKEPLWIVFEVSGTIHLRS----HLSVSSYKTIDGR----GQ----------RVKLTGKG-------LRLKEC 153 (332)
Q Consensus 99 SLr~Al~~~~Pr~IVF~VsGtI~L~~----~l~V~snkTI~G~----G~----------gitI~G~g-------i~i~~a 153 (332)
+|.+|++...|..+|.--.|++.-.. +|.+++.+||.|. |. +++|.|.+ +.|..+
T Consensus 17 Ti~~A~~~a~~g~~i~l~~GtY~~~~ge~fPi~i~~gVtl~G~~~~kG~~~il~~g~~~~~~I~g~~~~~~~qn~tI~~~ 96 (246)
T PF07602_consen 17 TITKALQAAQPGDTIQLAPGTYSEATGETFPIIIKPGVTLIGNESNKGQIDILITGGGTGPTISGGGPDLSGQNVTIILA 96 (246)
T ss_pred HHHHHHHhCCCCCEEEECCceeccccCCcccEEecCCeEEeecccCCCcceEEecCCceEEeEeccCccccceeEEEEec
Confidence 58899998888877776789987542 5888888999985 33 22344433 445567
Q ss_pred ccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeec-----CCccEEEeCceeccCCceeeecCCCC
Q 020048 154 EHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR-----ESTDITVSRCHFSSHDKTMLIGADPS 228 (332)
Q Consensus 154 ~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~-----~s~nVTIS~n~f~~h~k~~LiG~~d~ 228 (332)
++..|+.++|+......+-||.++ .+ +.-|..|+|+.+.-+-+.+.. ...+++|+.|.+.....+..+-....
T Consensus 97 ~~~~i~GvtItN~n~~~g~Gi~Ie-ss-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~ 174 (246)
T PF07602_consen 97 NNATISGVTITNPNIARGTGIWIE-SS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNAA 174 (246)
T ss_pred CCCEEEEEEEEcCCCCcceEEEEe-cC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEcccC
Confidence 788889999987744455678886 44 788899999986433344422 23456677776654433333221110
Q ss_pred CCCCcceeEEEeceeecCCCC------cCCccccC-eEEEEcceEEcCccceEEEcc--CceEEEEceEEec
Q 020048 229 HVADRCIRVTIHHCFFDGTRQ------RHPRVRYA-KVHLYNNYTRNWGIYAVCASV--DSQIYSQCNIYEA 291 (332)
Q Consensus 229 ~~~d~~~~VT~hhNlf~~~~~------R~Pr~r~G-~~hv~NN~~~n~~~~ai~~~~--~a~v~~egNyf~~ 291 (332)
- ....+-+|++.++.. ..|-+..+ ....-||.+++.+.|-+.... .-++++.||-...
T Consensus 175 ~-----~~n~I~NN~I~~N~~Gi~~~~~~pDlG~~s~~~~g~N~~~~N~~~Dl~~~~~~~~~l~a~gN~ld~ 241 (246)
T PF07602_consen 175 P-----VENKIENNIIENNNIGIVAIGDAPDLGTGSEGSPGNNIFRNNGRYDLNNSATPGQTLYAVGNQLDH 241 (246)
T ss_pred C-----ccceeeccEEEeCCcCeEeeccCCccccCCCCCCCCcEEecCcceeeEeccCCceeEEEeCCccCC
Confidence 0 011234455543322 11333321 223556667666666665421 1256666666554
No 17
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=98.00 E-value=8.8e-05 Score=74.82 Aligned_cols=97 Identities=22% Similarity=0.406 Sum_probs=71.3
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCC
Q 020048 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d 227 (332)
.+..++||.|++|+|.... ....|||.+. .+++|+|.+|.+..+.|. |.++.++++|+|++|... +.-++-||+-.
T Consensus 182 ~~~~~~~v~i~~v~I~~~~~spNtDGidi~-~s~nV~I~n~~I~~GDDc-Iaiksg~~nI~I~n~~c~-~ghGisiGSlG 258 (404)
T PLN02188 182 ALVECRNFKGSGLKISAPSDSPNTDGIHIE-RSSGVYISDSRIGTGDDC-ISIGQGNSQVTITRIRCG-PGHGISVGSLG 258 (404)
T ss_pred EEEccccEEEEEEEEeCCCCCCCCCcEeee-CcccEEEEeeEEeCCCcE-EEEccCCccEEEEEEEEc-CCCcEEeCCCC
Confidence 3345677777777776532 3467999997 899999999999998885 899888999999999885 33467788743
Q ss_pred CC-CCCcceeEEEeceeecCCC
Q 020048 228 SH-VADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 228 ~~-~~d~~~~VT~hhNlf~~~~ 248 (332)
.. ....-.+|++.++.|.++.
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~ 280 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTT 280 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCC
Confidence 21 1112248999999988763
No 18
>PLN02480 Probable pectinesterase
Probab=97.98 E-value=0.00019 Score=70.97 Aligned_cols=103 Identities=12% Similarity=0.247 Sum_probs=70.9
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccc-eEEeCC----------cEEEe
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQR-VKLTGK----------GLRLK 151 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~g-itI~G~----------gi~i~ 151 (332)
+.+|.| |+++||++. ..+++|+-..|+.+ +.|.|. +|+||.|.|.. .+|.+. .|.+
T Consensus 53 a~~G~g~f~TIQ~AIdaap~~~~~~~~I~Ik~GvY~--E~V~I~~~kp~ItL~G~g~~~TvI~~~~~~~~~~~saTvtV- 129 (343)
T PLN02480 53 DINGKGDFTSVQSAIDAVPVGNSEWIIVHLRKGVYR--EKVHIPENKPFIFMRGNGKGRTSIVWSQSSSDNAASATFTV- 129 (343)
T ss_pred CCCCCCCcccHHHHHhhCccCCCceEEEEEcCcEEE--EEEEECCCCceEEEEecCCCCeEEEccccccCCCCceEEEE-
Confidence 344544 899999764 23566666789984 788883 67999998633 334321 2555
Q ss_pred eeccEEEeeeEEeCCCC------CCCCceEEcCCCceEEEEceeeecCCCCce
Q 020048 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (332)
Q Consensus 152 ~a~NVIIRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 198 (332)
.+++++++||+|++..+ ...-|+.+.-.++++.+.+|.|.-..|-++
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy 182 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLF 182 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeE
Confidence 48999999999998632 123456665468899999999976655554
No 19
>PLN02155 polygalacturonase
Probab=97.98 E-value=7.2e-05 Score=75.19 Aligned_cols=97 Identities=18% Similarity=0.360 Sum_probs=72.5
Q ss_pred EEeeeccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCC
Q 020048 149 RLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADP 227 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d 227 (332)
.+..++||.|++|+|.... ....|||.+. .++||+|.+|.+..+.|. |.++.++.+|+|++|.+.. .-++-||+..
T Consensus 172 ~~~~~~nv~i~~v~I~~p~~~~NtDGidi~-~s~nV~I~~~~I~~gDDc-Iaik~gs~nI~I~n~~c~~-GhGisIGS~g 248 (394)
T PLN02155 172 TLNGCTNVVVRNVKLVAPGNSPNTDGFHVQ-FSTGVTFTGSTVQTGDDC-VAIGPGTRNFLITKLACGP-GHGVSIGSLA 248 (394)
T ss_pred EEECeeeEEEEEEEEECCCCCCCCCccccc-cceeEEEEeeEEecCCce-EEcCCCCceEEEEEEEEEC-CceEEecccc
Confidence 3345677777777776533 3567999996 899999999999998885 8998889999999998863 3457788863
Q ss_pred CCC-CCcceeEEEeceeecCCC
Q 020048 228 SHV-ADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 228 ~~~-~d~~~~VT~hhNlf~~~~ 248 (332)
... ...-.+|++.++.|.++.
T Consensus 249 ~~~~~~~V~nV~v~n~~~~~t~ 270 (394)
T PLN02155 249 KELNEDGVENVTVSSSVFTGSQ 270 (394)
T ss_pred ccCCCCcEEEEEEEeeEEeCCC
Confidence 221 222348999999998753
No 20
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.89 E-value=0.00081 Score=67.25 Aligned_cols=184 Identities=17% Similarity=0.279 Sum_probs=140.3
Q ss_pred ceEEecCCCCCCChhHHHhhhcCCCeEEEEeeceEEEecceeEeccCcceeeeccceEEeCC---cEEE---------ee
Q 020048 85 PLYHVTTLADDGPGSLREGCRMKEPLWIVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGK---GLRL---------KE 152 (332)
Q Consensus 85 ~v~~VTnl~dsG~GSLr~Al~~~~Pr~IVF~VsGtI~L~~~l~V~snkTI~G~G~gitI~G~---gi~i---------~~ 152 (332)
++|.+-=.+| |.+||.+-.. |..+.+-++.++++|.|.+..+|+|+|..+.|.+. +|.+ .+
T Consensus 47 kt~~~~P~eD-----le~~I~~haK--VaL~Pg~~Y~i~~~V~I~~~cYIiGnGA~V~v~~~~~~~f~v~~~~~~P~V~g 119 (386)
T PF01696_consen 47 KTYWMEPGED-----LEEAIRQHAK--VALRPGAVYVIRKPVNIRSCCYIIGNGATVRVNGPDRVAFRVCMQSMGPGVVG 119 (386)
T ss_pred EEEEcCCCcC-----HHHHHHhcCE--EEeCCCCEEEEeeeEEecceEEEECCCEEEEEeCCCCceEEEEcCCCCCeEee
Confidence 4566666777 9999998763 56778888999999999999999999988888643 2444 24
Q ss_pred eccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCCCCCCC
Q 020048 153 CEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVAD 232 (332)
Q Consensus 153 a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d 232 (332)
=.+|.+.|++|.... ...|+-+. ...++.|..|.|....--.++.. ....|..|.|..-.|+....+
T Consensus 120 M~~VtF~ni~F~~~~--~~~g~~f~-~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~~~------- 186 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD--TFSGVVFH-ANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVSRG------- 186 (386)
T ss_pred eeeeEEEEEEEecCC--ccceeEEE-ecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeecCC-------
Confidence 579999999998764 23556665 67899999999999888888774 578899999988777764221
Q ss_pred cceeEEEeceeecCCCCcCCccccCeEEEEcceEEcCccceEEEccCceEEEEceEEecCCc
Q 020048 233 RCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEAGQK 294 (332)
Q Consensus 233 ~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~egNyf~~g~~ 294 (332)
...+++.+|.|..|.-=- +..|...+.+|...+.. .+ .-++..-.+.+|.|....+
T Consensus 187 -~~~lsVk~C~FekC~igi--~s~G~~~i~hn~~~ec~--Cf-~l~~g~g~i~~N~v~~~~~ 242 (386)
T PF01696_consen 187 -KSKLSVKKCVFEKCVIGI--VSEGPARIRHNCASECG--CF-VLMKGTGSIKHNMVCGPND 242 (386)
T ss_pred -cceEEeeheeeeheEEEE--EecCCeEEecceecccc--eE-EEEcccEEEeccEEeCCCC
Confidence 236888999998876432 34588999999998875 33 3356777888888886644
No 21
>PLN02793 Probable polygalacturonase
Probab=97.86 E-value=0.0026 Score=65.01 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=94.9
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec-----CCCCceEeecCCccEEEeCceeccCCceee
Q 020048 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~idi~~~s~nVTIS~n~f~~h~k~~L 222 (332)
|++.+++||.|++|+++....+ .+.+. .+++|.|++.++.. ..|| ||+ ..+++|+|++|.|...+-...
T Consensus 180 i~f~~~~nv~v~gitl~nSp~~---~i~~~-~~~nv~i~~l~I~~p~~spNTDG-Idi-~~s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 180 ITFHKCKDLRVENLNVIDSQQM---HIAFT-NCRRVTISGLKVIAPATSPNTDG-IHI-SASRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEeeccEEEECeEEEcCCCe---EEEEE-ccCcEEEEEEEEECCCCCCCCCc-Eee-eccceEEEEeCEEeCCCCeEE
Confidence 6777899999999999987533 35565 78999999999963 5788 898 578999999999998887777
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC-------cCCcc-ccCeEEEEcceEEcCccceEEE-----c--cCceEEEEce
Q 020048 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPRV-RYAKVHLYNNYTRNWGIYAVCA-----S--VDSQIYSQCN 287 (332)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr~-r~G~~hv~NN~~~n~~~~ai~~-----~--~~a~v~~egN 287 (332)
+.++. .+|++.++.+....+ +.... ..-.+.+.|+.+.+.. +++.. + .-..|.+++-
T Consensus 254 ik~~s-------~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~-~GirIKt~~g~~G~v~nItf~ni 325 (443)
T PLN02793 254 IVGNS-------SRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTD-NGVRIKTWQGGSGNASKITFQNI 325 (443)
T ss_pred ecCCc-------CCEEEEEeEEeCCccEEEecccCcCCCCcEEEEEEEccEEeCCC-ceEEEEEeCCCCEEEEEEEEEeE
Confidence 75432 267787776633211 11100 0113677888877754 34432 1 1127888888
Q ss_pred EEecCCceeee
Q 020048 288 IYEAGQKKMAF 298 (332)
Q Consensus 288 yf~~g~~~~~~ 298 (332)
..++...|+++
T Consensus 326 ~m~nv~~pI~I 336 (443)
T PLN02793 326 FMENVSNPIII 336 (443)
T ss_pred EEecCCceEEE
Confidence 88888888754
No 22
>PLN02155 polygalacturonase
Probab=97.84 E-value=0.00063 Score=68.51 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=94.7
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec-----CCCCceEeecCCccEEEeCceeccCCceee
Q 020048 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~idi~~~s~nVTIS~n~f~~h~k~~L 222 (332)
|++..++||.|++|+++....+ .|.+. .+++|.|+++++.. ..|| +|+ ..+++|+|++|.|..-+-...
T Consensus 148 i~~~~~~nv~i~gitl~nSp~w---~i~~~-~~~nv~i~~v~I~~p~~~~NtDG-idi-~~s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 148 ISFNSAKDVIISGVKSMNSQVS---HMTLN-GCTNVVVRNVKLVAPGNSPNTDG-FHV-QFSTGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred eeEEEeeeEEEECeEEEcCCCe---EEEEE-CeeeEEEEEEEEECCCCCCCCCc-ccc-ccceeEEEEeeEEecCCceEE
Confidence 6778899999999999976433 35554 78999999999953 4688 788 568999999999998777777
Q ss_pred ecCCCCCCCCcceeEEEeceeecC-------CCCcCCc-cccCeEEEEcceEEcCccceEEE----c-cC---ceEEEEc
Q 020048 223 IGADPSHVADRCIRVTIHHCFFDG-------TRQRHPR-VRYAKVHLYNNYTRNWGIYAVCA----S-VD---SQIYSQC 286 (332)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~-------~~~R~Pr-~r~G~~hv~NN~~~n~~~~ai~~----~-~~---a~v~~eg 286 (332)
+++.. .+|++.++.+.. ...+.+. -..-.+.+.|+.+.+.. +++.. + .+ ..|.+++
T Consensus 222 ik~gs-------~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~-~GirIKT~~~~~gG~v~nI~f~n 293 (394)
T PLN02155 222 IGPGT-------RNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVFTGSQ-NGVRIKSWARPSTGFVRNVFFQD 293 (394)
T ss_pred cCCCC-------ceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEEeCCC-cEEEEEEecCCCCEEEEEEEEEe
Confidence 76542 267777766543 1222221 11125678888888754 35543 1 11 2678888
Q ss_pred eEEecCCceeee
Q 020048 287 NIYEAGQKKMAF 298 (332)
Q Consensus 287 Nyf~~g~~~~~~ 298 (332)
-..++...|+.+
T Consensus 294 i~m~~v~~pI~i 305 (394)
T PLN02155 294 LVMKNVENPIII 305 (394)
T ss_pred EEEcCccccEEE
Confidence 888887777654
No 23
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.78 E-value=0.00097 Score=61.38 Aligned_cols=130 Identities=15% Similarity=0.124 Sum_probs=97.1
Q ss_pred CCcEEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeec
Q 020048 145 GKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIG 224 (332)
Q Consensus 145 G~gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG 224 (332)
..++.+..+.++.|++.+|+.. ..||.+. .+.++.|..|.++....| +.+. .+.+.+|++|.|.+...+.++.
T Consensus 35 ~~gi~~~~s~~~~I~~n~i~~~----~~GI~~~-~s~~~~i~~n~i~~n~~G-i~l~-~s~~~~I~~N~i~~n~~GI~l~ 107 (236)
T PF05048_consen 35 RDGIYVENSDNNTISNNTISNN----RYGIHLM-GSSNNTIENNTISNNGYG-IYLM-GSSNNTISNNTISNNGYGIYLY 107 (236)
T ss_pred CCEEEEEEcCCeEEEeeEEECC----CeEEEEE-ccCCCEEEeEEEEccCCC-EEEE-cCCCcEEECCEecCCCceEEEe
Confidence 3456777899999999999875 5788887 788899999999998877 5564 4455599999999877776665
Q ss_pred CCCCCCCCcceeEEEeceeecCCCCcCCcccc-CeEEEEcceEEcCccceEE-EccCceEEEEceEEe
Q 020048 225 ADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNWGIYAVC-ASVDSQIYSQCNIYE 290 (332)
Q Consensus 225 ~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~~~~ai~-~~~~a~v~~egNyf~ 290 (332)
.+. ..++.+|.+. ....-=.+.. ....+.+|.+.+...+++. ........+.+|+|.
T Consensus 108 ~s~--------~~~I~~N~i~-~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f~ 166 (236)
T PF05048_consen 108 GSS--------NNTISNNTIS-NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTIYNNNFN 166 (236)
T ss_pred eCC--------ceEEECcEEe-CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEEECCCcc
Confidence 432 4678888887 3333333332 5678899999988667887 445557899999993
No 24
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.78 E-value=9.6e-05 Score=72.19 Aligned_cols=105 Identities=28% Similarity=0.498 Sum_probs=76.6
Q ss_pred cEEEeeeccEEEeeeEEeCCC-CCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecC
Q 020048 147 GLRLKECEHVIICNLEFEGGK-GPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA 225 (332)
Q Consensus 147 gi~i~~a~NVIIRnL~ir~g~-~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~ 225 (332)
.+.+..++||.|++|+|+... ....|||.+. +++||.|++|.+..+.|- +.++..+.+|+|++|.+.. ..+.-||+
T Consensus 117 ~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~-~s~nv~I~n~~i~~gDD~-Iaiks~~~ni~v~n~~~~~-ghGisiGS 193 (326)
T PF00295_consen 117 HIHINDCDNVTISNITINNPANSPNTDGIDID-SSKNVTIENCFIDNGDDC-IAIKSGSGNILVENCTCSG-GHGISIGS 193 (326)
T ss_dssp SEEEESEEEEEEESEEEEEGGGCTS--SEEEE-SEEEEEEESEEEESSSES-EEESSEECEEEEESEEEES-SSEEEEEE
T ss_pred EEEEEccCCeEEcceEEEecCCCCCcceEEEE-eeeEEEEEEeecccccCc-ccccccccceEEEeEEEec-cccceeee
Confidence 366778999999999998754 3567999997 889999999999888665 8898777899999999963 45577776
Q ss_pred CCCCCC-CcceeEEEeceeecCCCCcCCccc
Q 020048 226 DPSHVA-DRCIRVTIHHCFFDGTRQRHPRVR 255 (332)
Q Consensus 226 ~d~~~~-d~~~~VT~hhNlf~~~~~R~Pr~r 255 (332)
...... ..-.+|+|.++.+.++. |.-|++
T Consensus 194 ~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iK 223 (326)
T PF00295_consen 194 EGSGGSQNDIRNVTFENCTIINTD-NGIRIK 223 (326)
T ss_dssp ESSSSE--EEEEEEEEEEEEESES-EEEEEE
T ss_pred ccCCccccEEEeEEEEEEEeeccc-eEEEEE
Confidence 432211 01138999999887753 444453
No 25
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=97.78 E-value=0.00028 Score=59.05 Aligned_cols=116 Identities=20% Similarity=0.290 Sum_probs=78.1
Q ss_pred CceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCCCCcC
Q 020048 172 DAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRH 251 (332)
Q Consensus 172 DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~ 251 (332)
|||.+. +..++-|+.|+|.+.....+.+ .+...++|++|.|.+...++.+... .++++-+|.|.++. +.
T Consensus 1 ~Gi~i~-~~~~~~i~~~~i~~~~~~gi~~-~~~~~~~i~n~~i~~~~~gi~~~~~--------~~~~i~~~~~~~~~-~~ 69 (158)
T PF13229_consen 1 DGISIN-NGSNVTIRNCTISNNGGDGIHV-SGSSNITIENCTISNGGYGIYVSGG--------SNVTISNNTISDNG-SG 69 (158)
T ss_dssp -CEEET-TCEC-EEESEEEESSSSECEEE--SSCESEEES-EEESSTTSEEEECC--------ES-EEES-EEES-S-EE
T ss_pred CEEEEE-CCcCeEEeeeEEEeCCCeEEEE-EcCCCeEEECeEEECCCcEEEEecC--------CCeEEECeEEEEcc-ce
Confidence 578887 7788999999999976666777 4566799999999984444444332 26888999998877 44
Q ss_pred Ccccc-CeEEEEcceEEcCccceEEEcc-CceEEEEceEEecCCceeee
Q 020048 252 PRVRY-AKVHLYNNYTRNWGIYAVCASV-DSQIYSQCNIYEAGQKKMAF 298 (332)
Q Consensus 252 Pr~r~-G~~hv~NN~~~n~~~~ai~~~~-~a~v~~egNyf~~g~~~~~~ 298 (332)
..+.. ..+.+.+|.+++...+++.... .+.+.+++|.|......-++
T Consensus 70 i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~ 118 (158)
T PF13229_consen 70 IYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIY 118 (158)
T ss_dssp EECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCE
T ss_pred EEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEE
Confidence 44443 5689999999999888887776 77999999999998755433
No 26
>PLN03010 polygalacturonase
Probab=97.77 E-value=0.0021 Score=65.05 Aligned_cols=171 Identities=22% Similarity=0.271 Sum_probs=109.4
Q ss_pred EEEeeceEEEecce------------eEec--cCcceeeeccceEEeCCc------EEEeeeccEEEeeeEEeCCCCCCC
Q 020048 112 IVFEVSGTIHLRSH------------LSVS--SYKTIDGRGQRVKLTGKG------LRLKECEHVIICNLEFEGGKGPDV 171 (332)
Q Consensus 112 IVF~VsGtI~L~~~------------l~V~--snkTI~G~G~gitI~G~g------i~i~~a~NVIIRnL~ir~g~~~~~ 171 (332)
|.|.+.|+|..... +.+. .|++|.|.| +|.|.| |++.+++||.|++|+++....+
T Consensus 107 v~l~l~G~l~~~~d~~~w~~~~~~~wi~f~~v~nv~I~G~G---~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~-- 181 (409)
T PLN03010 107 IKVQLDGIIVAPSNIVAWSNPKSQMWISFSTVSGLMIDGSG---TIDGRGSSFWEALHISKCDNLTINGITSIDSPKN-- 181 (409)
T ss_pred EEEEEccEEEccCChhhccCCCCcceEEEecccccEEeece---EEeCCCccccceEEEEeecCeEEeeeEEEcCCce--
Confidence 55666688775432 2222 578888863 577755 7788999999999999987533
Q ss_pred CceEEcCCCceEEEEceeee-----cCCCCceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecC
Q 020048 172 DAIQIKPKSKHIWIDRCSLR-----DYDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDG 246 (332)
Q Consensus 172 DaI~i~~~s~nVwIDHcs~s-----~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~ 246 (332)
.|.+. .+++|.|++..+. ...|| +|+ ..+++|+|++|.|..-+-...+.+... ..+|+.-.|...|
T Consensus 182 -~i~i~-~~~nv~i~~i~I~a~~~s~NTDG-iDi-~~s~nV~I~n~~I~~gDDcIaiksgs~-----ni~I~~~~C~~gH 252 (409)
T PLN03010 182 -HISIK-TCNYVAISKINILAPETSPNTDG-IDI-SYSTNINIFDSTIQTGDDCIAINSGSS-----NINITQINCGPGH 252 (409)
T ss_pred -EEEEe-ccccEEEEEEEEeCCCCCCCCCc-eee-eccceEEEEeeEEecCCCeEEecCCCC-----cEEEEEEEeECcC
Confidence 36665 7899999999985 46788 898 568999999999998888777765421 1234433443221
Q ss_pred C-----CCcCCc-cccCeEEEEcceEEcCccceEEE----ccC---ceEEEEceEEecCCceee
Q 020048 247 T-----RQRHPR-VRYAKVHLYNNYTRNWGIYAVCA----SVD---SQIYSQCNIYEAGQKKMA 297 (332)
Q Consensus 247 ~-----~~R~Pr-~r~G~~hv~NN~~~n~~~~ai~~----~~~---a~v~~egNyf~~g~~~~~ 297 (332)
- ..+... -..-.+++.|+.+++.. +++.. +.+ ..|.+|+-.+++.+.|++
T Consensus 253 GisIGS~g~~~~~~~V~nV~v~n~~i~~t~-~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~ 315 (409)
T PLN03010 253 GISVGSLGADGANAKVSDVHVTHCTFNQTT-NGARIKTWQGGQGYARNISFENITLINTKNPII 315 (409)
T ss_pred CEEEccCCCCCCCCeeEEEEEEeeEEeCCC-cceEEEEecCCCEEEEEeEEEeEEEecCCccEE
Confidence 0 001000 00124677788777753 24332 111 267777777777766654
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.74 E-value=0.0015 Score=60.06 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred CcEEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecC
Q 020048 146 KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGA 225 (332)
Q Consensus 146 ~gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~ 225 (332)
.||.+..+++++|++-.|+... .||.+. .+.+..|..|.|+....| |.+ ..+.+.+|+.|.|.+...++.+-.
T Consensus 58 ~GI~~~~s~~~~i~~n~i~~n~----~Gi~l~-~s~~~~I~~N~i~~n~~G-I~l-~~s~~~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 58 YGIHLMGSSNNTIENNTISNNG----YGIYLM-GSSNNTISNNTISNNGYG-IYL-YGSSNNTISNNTISNNGYGIYLSS 130 (236)
T ss_pred eEEEEEccCCCEEEeEEEEccC----CCEEEE-cCCCcEEECCEecCCCce-EEE-eeCCceEEECcEEeCCCEEEEEEe
Confidence 3688888999999999999753 889997 566669999999999886 556 467889999999998888877655
Q ss_pred CCCCCCCcceeEEEeceeecCCCCcCCc-cc-cCeEEEEcceEEcCc
Q 020048 226 DPSHVADRCIRVTIHHCFFDGTRQRHPR-VR-YAKVHLYNNYTRNWG 270 (332)
Q Consensus 226 ~d~~~~d~~~~VT~hhNlf~~~~~R~Pr-~r-~G~~hv~NN~~~n~~ 270 (332)
+. +.++.+|.|.++..---. +. .....+++|.| +..
T Consensus 131 s~--------~n~I~~N~i~~n~~~Gi~~~~~s~~n~I~~N~f-~N~ 168 (236)
T PF05048_consen 131 SS--------NNTITGNTISNNTDYGIYFLSGSSGNTIYNNNF-NNS 168 (236)
T ss_pred CC--------CCEEECeEEeCCCccceEEeccCCCCEEECCCc-cCE
Confidence 42 578899999888444334 22 24578999999 443
No 28
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=97.69 E-value=0.0019 Score=65.27 Aligned_cols=138 Identities=12% Similarity=0.134 Sum_probs=95.6
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec-----CCCCceEeecCCccEEEeCceeccCCceee
Q 020048 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~idi~~~s~nVTIS~n~f~~h~k~~L 222 (332)
|.+..++||.|++|+++....+ .|.+. .+++|.|++.++.. ..|| ||+ ..+++|+|.+|.|..-+-+..
T Consensus 158 i~f~~~~nv~i~gitl~nSp~w---~i~~~-~~~~v~i~~v~I~~~~~spNtDG-idi-~~s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 158 VKFVNMNNTVVRGITSVNSKFF---HIALV-ECRNFKGSGLKISAPSDSPNTDG-IHI-ERSSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEeeeeEEEeCeEEEcCCCe---EEEEE-ccccEEEEEEEEeCCCCCCCCCc-Eee-eCcccEEEEeeEEeCCCcEEE
Confidence 5677899999999999987543 35665 78999999999874 5788 888 568999999999998888877
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCC-------cCCc-cccCeEEEEcceEEcCccceEEEc-------cC--ceEEEE
Q 020048 223 IGADPSHVADRCIRVTIHHCFFDGTRQ-------RHPR-VRYAKVHLYNNYTRNWGIYAVCAS-------VD--SQIYSQ 285 (332)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~-------R~Pr-~r~G~~hv~NN~~~n~~~~ai~~~-------~~--a~v~~e 285 (332)
+.+... +|++-++....... +... -....+.+.|+.+.+.. +++..- .+ ..|.++
T Consensus 232 iksg~~-------nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~-~GiriKt~~g~~~~G~v~nI~f~ 303 (404)
T PLN02188 232 IGQGNS-------QVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTT-NGIRIKTWANSPGKSAATNMTFE 303 (404)
T ss_pred EccCCc-------cEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEEEEEeeEEECCC-cEEEEEEecCCCCceEEEEEEEE
Confidence 765421 56776665533211 1000 01124678888888764 354431 11 278889
Q ss_pred ceEEecCCceeeee
Q 020048 286 CNIYEAGQKKMAFK 299 (332)
Q Consensus 286 gNyf~~g~~~~~~~ 299 (332)
+-.+++...|++++
T Consensus 304 ni~m~~v~~pI~i~ 317 (404)
T PLN02188 304 NIVMNNVTNPIIID 317 (404)
T ss_pred eEEecCccceEEEE
Confidence 99999888887543
No 29
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=97.65 E-value=0.0017 Score=63.47 Aligned_cols=134 Identities=19% Similarity=0.282 Sum_probs=92.2
Q ss_pred EEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec-----CCCCceEeecCCccEEEeCceeccCCceee
Q 020048 148 LRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD-----YDDGLIDITRESTDITVSRCHFSSHDKTML 222 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~-----~~Dg~idi~~~s~nVTIS~n~f~~h~k~~L 222 (332)
|++..++|+.|++|+++....+ .+.+. .+++|+|+++++.. ..|| +|+ ..+++|+|.+|.|...+-...
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w---~~~~~-~~~nv~i~~i~I~~~~~~~NtDG-id~-~~s~nv~I~n~~i~~gDD~Ia 168 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW---HIHIN-DCDNVTISNITINNPANSPNTDG-IDI-DSSKNVTIENCFIDNGDDCIA 168 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE---SEEEE-SEEEEEEESEEEEEGGGCTS--S-EEE-ESEEEEEEESEEEESSSESEE
T ss_pred eeeeeecceEEEeeEecCCCee---EEEEE-ccCCeEEcceEEEecCCCCCcce-EEE-EeeeEEEEEEeecccccCccc
Confidence 7888899999999999987544 46675 78999999999963 4688 898 468999999999987777666
Q ss_pred ecCCCCCCCCcceeEEEeceeecCCCCcCCccc---cC-------eEEEEcceEEcCccceEEEc----cC---ceEEEE
Q 020048 223 IGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR---YA-------KVHLYNNYTRNWGIYAVCAS----VD---SQIYSQ 285 (332)
Q Consensus 223 iG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r---~G-------~~hv~NN~~~n~~~~ai~~~----~~---a~v~~e 285 (332)
+.+.. .+|++.++++.+... =.++ .+ .+.+.|+.+.+.. +++..- .+ ..|.+|
T Consensus 169 iks~~-------~ni~v~n~~~~~ghG--isiGS~~~~~~~~~i~nV~~~n~~i~~t~-~gi~iKt~~~~~G~v~nI~f~ 238 (326)
T PF00295_consen 169 IKSGS-------GNILVENCTCSGGHG--ISIGSEGSGGSQNDIRNVTFENCTIINTD-NGIRIKTWPGGGGYVSNITFE 238 (326)
T ss_dssp ESSEE-------CEEEEESEEEESSSE--EEEEEESSSSE--EEEEEEEEEEEEESES-EEEEEEEETTTSEEEEEEEEE
T ss_pred ccccc-------cceEEEeEEEecccc--ceeeeccCCccccEEEeEEEEEEEeeccc-eEEEEEEecccceEEeceEEE
Confidence 65432 178898998865433 1111 11 3455666666543 455331 11 268888
Q ss_pred ceEEecCCceee
Q 020048 286 CNIYEAGQKKMA 297 (332)
Q Consensus 286 gNyf~~g~~~~~ 297 (332)
+...++...|+.
T Consensus 239 ni~~~~v~~pi~ 250 (326)
T PF00295_consen 239 NITMENVKYPIF 250 (326)
T ss_dssp EEEEEEESEEEE
T ss_pred EEEecCCceEEE
Confidence 888888777764
No 30
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.62 E-value=0.0015 Score=66.48 Aligned_cols=70 Identities=20% Similarity=0.191 Sum_probs=42.4
Q ss_pred cCcceeee-----ccceEEeCCcEEEeeeccEEEeeeEEeCCCC-------------------CCCCceEEcCCCceEEE
Q 020048 130 SYKTIDGR-----GQRVKLTGKGLRLKECEHVIICNLEFEGGKG-------------------PDVDAIQIKPKSKHIWI 185 (332)
Q Consensus 130 snkTI~G~-----G~gitI~G~gi~i~~a~NVIIRnL~ir~g~~-------------------~~~DaI~i~~~s~nVwI 185 (332)
+++||.|. |....-...+|.+.+|+++.|++.++++... ....+|.+. .++++.|
T Consensus 115 ~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~~N~I~g~~~~~I~lw-~S~g~~V 193 (455)
T TIGR03808 115 DGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDISGNTITQIAVTAIVSF-DALGLIV 193 (455)
T ss_pred CCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEecceEeccccceEEEe-ccCCCEE
Confidence 55655554 4332223345788889999999999997520 012234443 4557777
Q ss_pred EceeeecCCCCceEe
Q 020048 186 DRCSLRDYDDGLIDI 200 (332)
Q Consensus 186 DHcs~s~~~Dg~idi 200 (332)
.+++++...|..|.+
T Consensus 194 ~~N~I~g~RD~gi~i 208 (455)
T TIGR03808 194 ARNTIIGANDNGIEI 208 (455)
T ss_pred ECCEEEccCCCCeEE
Confidence 777777766644444
No 31
>PLN02176 putative pectinesterase
Probab=97.59 E-value=0.0019 Score=63.84 Aligned_cols=103 Identities=14% Similarity=0.271 Sum_probs=69.4
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe--CC--------cEEEee
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--GK--------GLRLKE 152 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~--G~--------gi~i~~ 152 (332)
+.+|.| |+++||++- ..+++|+-..|+.. +.|.|. +|+||.|.|..-|+. +. .+.+ .
T Consensus 44 a~dGsGdf~TIq~AIdavP~~~~~~~~I~Ik~GvY~--EkV~Ip~~k~~vtl~G~g~~~TiIt~~~~~~t~~saT~~v-~ 120 (340)
T PLN02176 44 NPNDARYFKTVQSAIDSIPLQNQNWIRILIQNGIYR--EKVTIPKEKGYIYMQGKGIEKTIIAYGDHQATDTSATFTS-Y 120 (340)
T ss_pred CCCCCCCccCHHHHHhhchhcCCceEEEEECCcEEE--EEEEECCCCccEEEEEcCCCceEEEEeCCcccccceEEEE-E
Confidence 455655 789999752 23566665689984 778884 689999997554443 11 2455 4
Q ss_pred eccEEEeeeEEeCCCC-------CCCCceEEcCCCceEEEEceeeecCCCCce
Q 020048 153 CEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (332)
Q Consensus 153 a~NVIIRnL~ir~g~~-------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 198 (332)
+++++.+||+|++..+ ...-|+.++-.++.+.+.+|.|.-..|-++
T Consensus 121 a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy 173 (340)
T PLN02176 121 ASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLF 173 (340)
T ss_pred CCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeE
Confidence 8999999999997532 112344444357889999999976555444
No 32
>PLN02197 pectinesterase
Probab=97.58 E-value=0.0033 Score=66.26 Aligned_cols=175 Identities=18% Similarity=0.283 Sum_probs=103.9
Q ss_pred cccccCCCcCCCCCceEEecCCCCCCCh---hHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccc
Q 020048 71 AEGFGRLAIGGLHGPLYHVTTLADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQR 140 (332)
Q Consensus 71 aeGfg~~ttGG~gG~v~~VTnl~dsG~G---SLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~g 140 (332)
+.+.|+.+-||.++.+-..-.++.+|.| ++++||++ +..|+||+-..|++ ++.+.|. +|+||.|.|.+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~vVa~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~ni~l~G~g~~ 335 (588)
T PLN02197 258 KAGRGANAGGGGGGKIKATHVVAKDGSGQFKTISQAVMACPDKNPGRCIIHIKAGIY--NEQVTIPKKKNNIFMFGDGAR 335 (588)
T ss_pred cCcccccccccccccccccEEEcCCCCCCcCCHHHHHHhccccCCceEEEEEeCceE--EEEEEccCCCceEEEEEcCCC
Confidence 3444555666665554333335566766 78899975 23467777678998 4778884 58999999765
Q ss_pred eEEe-C-------Cc--------EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCCCce-----
Q 020048 141 VKLT-G-------KG--------LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI----- 198 (332)
Q Consensus 141 itI~-G-------~g--------i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i----- 198 (332)
-|+. + .| +.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-..|-++
T Consensus 336 ~TiIt~~~~~~~~~g~~T~~SaT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~R 414 (588)
T PLN02197 336 KTVISYNRSVKLSPGTTTSLSGTVQV-ESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNGR 414 (588)
T ss_pred CeEEEeccccccCCCCcccceeEEEE-ECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCCC
Confidence 4443 1 11 333 489999999999986432 22344444468899999999976555444
Q ss_pred ------------EeecCCccEEEeCceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCC
Q 020048 199 ------------DITRESTDITVSRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 199 ------------di~~~s~nVTIS~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~ 248 (332)
|+.-+....-+++|.|.-.. ++.+--.+.....+...-..|++|.+....
T Consensus 415 qyy~~C~I~GtVDFIFG~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 415 QFYRNIVVSGTVDFIFGKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred EEEEeeEEEecccccccceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCC
Confidence 33333344667777765211 111111110000111235889999886643
No 33
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.0052 Score=60.60 Aligned_cols=167 Identities=19% Similarity=0.223 Sum_probs=103.8
Q ss_pred eceEEEecceeEeccCcceeeeccceEEeCCc----EEEeeeccEEEeeeEEeCCCC---CCCCceEEcCCCceEEEEce
Q 020048 116 VSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKG----LRLKECEHVIICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRC 188 (332)
Q Consensus 116 VsGtI~L~~~l~V~snkTI~G~G~gitI~G~g----i~i~~a~NVIIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHc 188 (332)
.+|+. .+.+.|+.-+|+.|. +++++.|.+ ++++ +.++|||.|++++... .-..+|-+...++.-.|.||
T Consensus 39 i~g~~--~g~~vInr~l~l~ge-~ga~l~g~g~G~~vtv~-aP~~~v~Gl~vr~sg~~lp~m~agI~v~~~at~A~Vr~N 114 (408)
T COG3420 39 ISGRY--AGNFVINRALTLRGE-NGAVLDGGGKGSYVTVA-APDVIVEGLTVRGSGRSLPAMDAGIFVGRTATGAVVRHN 114 (408)
T ss_pred Eeeee--cccEEEccceeeccc-cccEEecCCcccEEEEe-CCCceeeeEEEecCCCCcccccceEEeccCcccceEEcc
Confidence 44766 467888888999997 567787644 7775 9999999999997643 23456777667888899999
Q ss_pred eeecCCCCceEeecCCccEEEeCceecc--------CCce-eeecCCCCC--------CCCcceeEEEeceeecCCCCcC
Q 020048 189 SLRDYDDGLIDITRESTDITVSRCHFSS--------HDKT-MLIGADPSH--------VADRCIRVTIHHCFFDGTRQRH 251 (332)
Q Consensus 189 s~s~~~Dg~idi~~~s~nVTIS~n~f~~--------h~k~-~LiG~~d~~--------~~d~~~~VT~hhNlf~~~~~R~ 251 (332)
.+..+..|.+ + .++.++-|--|.+.. ..-+ .+|..++.. ..|.-.-=|-+||.|.+++-|.
T Consensus 115 ~l~~n~~Gi~-l-~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 115 DLIGNSFGIY-L-HGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred cccccceEEE-E-eccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcccccceecccchhh
Confidence 9999988844 4 457788888777652 1111 244443322 2232122244778888777775
Q ss_pred CccccC-----eEEEEcceEEcC-ccceEEEccCc-eEEEEceEEec
Q 020048 252 PRVRYA-----KVHLYNNYTRNW-GIYAVCASVDS-QIYSQCNIYEA 291 (332)
Q Consensus 252 Pr~r~G-----~~hv~NN~~~n~-~~~ai~~~~~a-~v~~egNyf~~ 291 (332)
-|+..- ...+.-|..++. .+|++ |.+ ++.+.+|.-..
T Consensus 193 ~RygvHyM~t~~s~i~dn~s~~N~vG~AL---Mys~~l~V~~nrS~G 236 (408)
T COG3420 193 LRYGVHYMYTNDSRISDNSSRDNRVGYAL---MYSDRLKVSDNRSSG 236 (408)
T ss_pred eeeeEEEEeccCcEeecccccCCcceEEE---EEeccEEEEcCcccC
Confidence 555421 123444544433 23444 555 45555555443
No 34
>PLN02304 probable pectinesterase
Probab=97.44 E-value=0.014 Score=58.53 Aligned_cols=103 Identities=16% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEe---ccCcceeeeccceEEeC--------------CcEE
Q 020048 94 DDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLTG--------------KGLR 149 (332)
Q Consensus 94 dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V---~snkTI~G~G~gitI~G--------------~gi~ 149 (332)
.+|.| |+++||++- ..|++|+-..|+. .+.|.| ++|+||.|+|..-|+.- ..+.
T Consensus 81 ~dGsGdf~TIQ~AIdavP~~~~~r~vI~Ik~GvY--~EkV~Ip~~K~~Itl~G~g~~~TiIt~~~~a~~~~gT~~SaTv~ 158 (379)
T PLN02304 81 PNGCCNFTTVQSAVDAVGNFSQKRNVIWINSGIY--YEKVTVPKTKPNITFQGQGFDSTAIAWNDTAKSANGTFYSASVQ 158 (379)
T ss_pred CCCCCCccCHHHHHhhCcccCCCcEEEEEeCeEe--EEEEEECCCCCcEEEEecCCCCcEEEccCcccCCCCccceEEEE
Confidence 34544 789999762 3366666678988 477888 37899999975544321 1133
Q ss_pred EeeeccEEEeeeEEeCCCCC------CCCceEEcCCCceEEEEceeeecCCCCceE
Q 020048 150 LKECEHVIICNLEFEGGKGP------DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (332)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~~------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 199 (332)
+ .+++++.+||+|+..... ..-|+.++-.++.+.+.+|.|.-..|-+++
T Consensus 159 v-~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~ 213 (379)
T PLN02304 159 V-FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHD 213 (379)
T ss_pred E-ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEe
Confidence 3 489999999999976421 123444443578999999999876666553
No 35
>PLN02432 putative pectinesterase
Probab=97.37 E-value=0.008 Score=58.41 Aligned_cols=98 Identities=15% Similarity=0.281 Sum_probs=67.6
Q ss_pred hhHHHhhhcC----CCeEEEEeeceEEEecceeEe---ccCcceeeeccceEEe----C------CcEEEeeeccEEEee
Q 020048 98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT----G------KGLRLKECEHVIICN 160 (332)
Q Consensus 98 GSLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V---~snkTI~G~G~gitI~----G------~gi~i~~a~NVIIRn 160 (332)
-|+++||+.- ..+++|+-..|+. .+.|.| ++|+||.|.+..-++. + ..+.+ .+++++++|
T Consensus 24 ~TIq~Aida~p~~~~~~~~I~I~~G~Y--~E~V~ip~~k~~itl~G~~~~~TvI~~~~~~~~~~saT~~v-~a~~f~a~n 100 (293)
T PLN02432 24 RKIQDAIDAVPSNNSQLVFIWVKPGIY--REKVVVPADKPFITLSGTQASNTIITWNDGGDIFESPTLSV-LASDFVGRF 100 (293)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcee--EEEEEEeccCceEEEEEcCCCCeEEEecCCcccccceEEEE-ECCCeEEEe
Confidence 4688999752 2345555567988 577888 3789999997544443 1 11444 489999999
Q ss_pred eEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCce
Q 020048 161 LEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (332)
Q Consensus 161 L~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 198 (332)
|+|++..+...-|+.++-.++.+.+.+|.|.-..|-++
T Consensus 101 lt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy 138 (293)
T PLN02432 101 LTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQDTLL 138 (293)
T ss_pred eEEEeCCCCCCceEEEEEcCCcEEEEcceEecccceeE
Confidence 99998654334455554457899999999986655554
No 36
>PLN02497 probable pectinesterase
Probab=97.29 E-value=0.025 Score=55.91 Aligned_cols=98 Identities=11% Similarity=0.195 Sum_probs=66.2
Q ss_pred hhHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEE-eC---------CcEEEeeeccEEEee
Q 020048 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TG---------KGLRLKECEHVIICN 160 (332)
Q Consensus 98 GSLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI-~G---------~gi~i~~a~NVIIRn 160 (332)
-|+++||++ ...+++|+-..|+. ++.+.|. +++||.|+|..-++ .. ..+.+ .+++++.+|
T Consensus 45 ~TIq~AIdavP~~~~~~~~I~Ik~G~Y--~EkV~Ip~~k~~itl~G~g~~~tiIt~~~~~~t~~SaT~~v-~a~~f~a~n 121 (331)
T PLN02497 45 TTIQSAIDSVPSNNKHWFCINVKAGLY--REKVKIPYDKPFIVLVGAGKRRTRIEWDDHDSTAQSPTFST-LADNTVVKS 121 (331)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcEE--EEEEEecCCCCcEEEEecCCCCceEEEeccccccCceEEEE-ecCCeEEEc
Confidence 378899975 23455666568988 5778883 68999999754333 21 11444 489999999
Q ss_pred eEEeCCCCC--------CCCceEEcCCCceEEEEceeeecCCCCce
Q 020048 161 LEFEGGKGP--------DVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (332)
Q Consensus 161 L~ir~g~~~--------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 198 (332)
|+|++..+. ..-|+.++-.++.+.+.+|.|.-..|-++
T Consensus 122 lT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy 167 (331)
T PLN02497 122 ITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLW 167 (331)
T ss_pred cEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccccee
Confidence 999976421 12344444457889999999987666554
No 37
>PLN02682 pectinesterase family protein
Probab=97.23 E-value=0.041 Score=55.13 Aligned_cols=99 Identities=16% Similarity=0.278 Sum_probs=65.6
Q ss_pred hhHHHhhhcC----CCeEEEEeeceEEEecceeEe---ccCcceeeeccceEEe------------CC--------cEEE
Q 020048 98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSV---SSYKTIDGRGQRVKLT------------GK--------GLRL 150 (332)
Q Consensus 98 GSLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V---~snkTI~G~G~gitI~------------G~--------gi~i 150 (332)
-|+++||++- ..|++|+-..|+. ++.+.| ++|+||.|.|..-|+. |. .+.+
T Consensus 83 ~TIQ~AIdavP~~~~~r~vI~Ik~G~Y--~EkV~Ip~~k~~Itl~G~g~~~TiIt~~~~a~~~~~~g~~~gT~~SAT~~v 160 (369)
T PLN02682 83 TTIQAAIDSLPVINLVRVVIKVNAGTY--REKVNIPPLKAYITLEGAGADKTIIQWGDTADTPGPGGRPLGTYGSATFAV 160 (369)
T ss_pred cCHHHHHhhccccCCceEEEEEeCcee--eEEEEEeccCceEEEEecCCCccEEEeccccCccCCCCCccccccceEEEE
Confidence 4788999752 2355565567988 477888 4789999997543332 10 1344
Q ss_pred eeeccEEEeeeEEeCCCCC------CCCceEEcCCCceEEEEceeeecCCCCceE
Q 020048 151 KECEHVIICNLEFEGGKGP------DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (332)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 199 (332)
.+++++.+||+|++..+. ..-|+.++-.++++.+.+|.|.-..|-+++
T Consensus 161 -~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~ 214 (369)
T PLN02682 161 -NSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYD 214 (369)
T ss_pred -ECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEE
Confidence 489999999999975421 122444433588999999999766555443
No 38
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.14 E-value=0.04 Score=57.50 Aligned_cols=196 Identities=18% Similarity=0.412 Sum_probs=112.4
Q ss_pred CCCCCh---hHHHhhhcC-----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------
Q 020048 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG-------- 147 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~-----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-----~g-------- 147 (332)
+.+|.| ++++||+.. ..|++|+-..|++ ++.+.|. +|+||.|.|.+-|+. + .+
T Consensus 230 a~dGsG~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItl~G~g~~~TiIt~~~~~~~g~~T~~SaT 307 (529)
T PLN02170 230 AADGSGTHKTIGEALLSTSLESGGGRTVIYLKAGTY--HENLNIPTKQKNVMLVGDGKGKTVIVGSRSNRGGWTTYQTAT 307 (529)
T ss_pred cCCCCCchhhHHHHHHhcccccCCceEEEEEeCCee--EEEEecCCCCceEEEEEcCCCCeEEEeCCcCCCCCccccceE
Confidence 445655 788999742 2467777778998 4778773 689999998655543 2 11
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEE
Q 020048 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV 209 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTI 209 (332)
+.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-..| |.+|+.-+....-+
T Consensus 308 v~v-~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avF 386 (529)
T PLN02170 308 VAA-MGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHSKRQFYRETDITGTVDFIFGNSAVVF 386 (529)
T ss_pred EEE-EcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCCCCEEEEeeEEccccceecccceEEE
Confidence 333 489999999999986532 22344444357889999999975544 44444444455677
Q ss_pred eCceeccCC----ceeeecCCCCCCCCcceeEEEeceeecCCC----CcCCccccCeEEEEcceEEc------CccceEE
Q 020048 210 SRCHFSSHD----KTMLIGADPSHVADRCIRVTIHHCFFDGTR----QRHPRVRYAKVHLYNNYTRN------WGIYAVC 275 (332)
Q Consensus 210 S~n~f~~h~----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~----~R~Pr~r~G~~hv~NN~~~n------~~~~ai~ 275 (332)
++|.|.-.. .+.+--.+... .+...-..|++|.+.... +| |.-.+.++-+.|.++.. |..+.-.
T Consensus 387 q~C~I~~~~~~~~~g~ITAq~R~~-~~~~~Gfvf~~C~it~~~~~yLGR-PW~~ysrvVf~~t~l~~~I~p~GW~~W~~~ 464 (529)
T PLN02170 387 QSCNIAARKPSGDRNYVTAQGRSD-PNQNTGISIHNCRITAESMTYLGR-PWKEYSRTVVMQSFIDGSIHPSGWSPWSGS 464 (529)
T ss_pred eccEEEEecCCCCceEEEecCCCC-CCCCceEEEEeeEEecCCceeeeC-CCCCCceEEEEecccCCeecccccCCCCCC
Confidence 778775321 12221111000 011235788888875532 12 22123556666666543 3222111
Q ss_pred EccCceEEEEceEEecCC
Q 020048 276 ASVDSQIYSQCNIYEAGQ 293 (332)
Q Consensus 276 ~~~~a~v~~egNyf~~g~ 293 (332)
...+.-.+.|-|=+-+|.
T Consensus 465 ~~~~t~~yaEy~n~GpGa 482 (529)
T PLN02170 465 FALKTLYYGEFGNSGPGS 482 (529)
T ss_pred CCCCceEEEEeccccCCC
Confidence 112334567766666664
No 39
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.11 E-value=0.026 Score=60.48 Aligned_cols=151 Identities=20% Similarity=0.370 Sum_probs=94.1
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 020048 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G~-----g--------i 148 (332)
+.+|.| ++++||+. ...|+||+-..|++ .+.+.|. .|+||.|.|.+-|+. +. | +
T Consensus 255 a~dGsG~f~TIq~Av~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~Gdg~~~TiIt~~~~~~dg~~T~~SAT~ 332 (670)
T PLN02217 255 AQDGSGQYKTINEALNFVPKKKNTTFVVHIKAGIY--KEYVQVNRSMTHLVFIGDGPDKTVISGSKSYKDGITTYKTATV 332 (670)
T ss_pred CCCCCCCccCHHHHHHhccccCCceEEEEEeCCce--EEEEEEcCCCCcEEEEecCCCCeEEEcCCccCCCCCccceEEE
Confidence 445655 78899975 23466777678988 4778885 478999998655543 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCC-----------------CCceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dg~idi~~~s~nVTIS 210 (332)
.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|.-.. .|.+|+.-+....-++
T Consensus 333 ~v-~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 411 (670)
T PLN02217 333 AI-VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHSHRQFYRDCTISGTIDFLFGDAAAVFQ 411 (670)
T ss_pred EE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCCCcEEEEeCEEEEeccEEecCceEEEE
Confidence 33 489999999999976542 2344545446889999999997543 3444554455567788
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
+|.|.-.. ++.+--.+... .+...-..|++|.+...
T Consensus 412 ~C~I~~r~~~~~~~~~ITAqgr~~-~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 412 NCTLLVRKPLLNQACPITAHGRKD-PRESTGFVLQGCTIVGE 452 (670)
T ss_pred ccEEEEccCCCCCceeEecCCCCC-CCCCceEEEEeeEEecC
Confidence 88886321 11111111000 11123688899988664
No 40
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.01 Score=62.07 Aligned_cols=196 Identities=19% Similarity=0.430 Sum_probs=112.1
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 020048 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G~-----g--------i 148 (332)
+.+|.| ++++||++ +..|+||+-..|++ .+.+.|. +|+||.|.|.+.|+. +. + +
T Consensus 235 a~dGsG~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 312 (541)
T PLN02416 235 AADGTGNFSTITDAINFAPNNSNDRIIIYVREGVY--EENVEIPIYKTNIVLIGDGSDVTFITGNRSVVDGWTTFRSATL 312 (541)
T ss_pred CCCCCCCccCHHHHHHhhhhcCCceEEEEEeCcee--EEEEecCCCCccEEEEecCCCceEEeCCCccCCCCCccceEEE
Confidence 345665 68889975 34577777778988 4778774 689999998654443 21 1 4
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS 210 (332)
.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+-+|.|.-..| |.+|+.-+....-++
T Consensus 313 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 391 (541)
T PLN02416 313 AV-SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHSFRQFYRECDIYGTIDYIFGNAAVVFQ 391 (541)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCCCceEEEeeEEeeccceeeccceEEEe
Confidence 44 489999999999976432 22334333357889999999975433 344444445567778
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCCC----cC--------CccccCeEEEEcceEEc-----
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQ----RH--------PRVRYAKVHLYNNYTRN----- 268 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~----R~--------Pr~r~G~~hv~NN~~~n----- 268 (332)
+|.|.... ++.+--.+.. ..+...-..||+|.+..... +. |.-.+.++-+.|.++.+
T Consensus 392 ~c~i~~~~~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~sr~v~~~s~i~~~I~p~ 470 (541)
T PLN02416 392 ACNIVSKMPMPGQFTVITAQSRD-TPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVYSRTVVLESYIDDFIDPS 470 (541)
T ss_pred ccEEEEecCCCCCceEEECCCCC-CCCCCCEEEEEeeEEecCCccccccccccccccCCCCCCccEEEEecccCCeeccc
Confidence 88775422 1111111110 01112368889998864321 11 11123456666766543
Q ss_pred -CccceEEEccCceEEEEceEEecC
Q 020048 269 -WGIYAVCASVDSQIYSQCNIYEAG 292 (332)
Q Consensus 269 -~~~~ai~~~~~a~v~~egNyf~~g 292 (332)
|..+......+.-.+.|-+=.-+|
T Consensus 471 GW~~w~~~~~~~t~~yaEy~n~GpG 495 (541)
T PLN02416 471 GWSKWNGNEGLDTLYYGEYDNNGPG 495 (541)
T ss_pred ccCcCCCCCCCCceEEEEecccCCC
Confidence 332221122233456676555554
No 41
>PLN02665 pectinesterase family protein
Probab=97.02 E-value=0.072 Score=53.33 Aligned_cols=99 Identities=14% Similarity=0.237 Sum_probs=66.2
Q ss_pred hhHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceE-EeCC------------cEEEeeeccEE
Q 020048 98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK------------GLRLKECEHVI 157 (332)
Q Consensus 98 GSLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~git-I~G~------------gi~i~~a~NVI 157 (332)
-|+++||++- ..|+||+-..|+.+ +.|.|. +++||.|.+...+ |... .+.+ .+++++
T Consensus 81 ~TIq~AIdaiP~~~~~r~vI~Ik~GvY~--EkV~Ip~~kp~Itl~G~~~~~tiIt~~~~a~~~gT~~SaTv~v-~a~~F~ 157 (366)
T PLN02665 81 KTITDAIKSIPAGNTQRVIIDIGPGEYN--EKITIDRSKPFVTLYGSPGAMPTLTFDGTAAKYGTVYSATLIV-ESDYFM 157 (366)
T ss_pred cCHHHHHhhCcccCCceEEEEEeCcEEE--EEEEecCCCCEEEEEecCCCCCEEEECCccCCCCCcceEEEEE-ECCCeE
Confidence 4789999762 33666666679884 778884 6789999864433 3211 1334 589999
Q ss_pred EeeeEEeCCCCC------CCCceEEcCCCceEEEEceeeecCCCCceE
Q 020048 158 ICNLEFEGGKGP------DVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (332)
Q Consensus 158 IRnL~ir~g~~~------~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 199 (332)
.+||+|++..+. ..-|+.++-.++.+.+.+|.|.-..|-+++
T Consensus 158 a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~ 205 (366)
T PLN02665 158 AANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCD 205 (366)
T ss_pred EEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEe
Confidence 999999975421 123443433578899999999866665554
No 42
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.00 E-value=0.046 Score=57.32 Aligned_cols=190 Identities=16% Similarity=0.382 Sum_probs=110.3
Q ss_pred hhHHHhhhcC-------CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-------C------cEEEeee
Q 020048 98 GSLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K------GLRLKEC 153 (332)
Q Consensus 98 GSLr~Al~~~-------~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-------~------gi~i~~a 153 (332)
-++++||++. ..|+||+-..|++ ++.|.|. +|+||.|.|.+-||. + . .+.+ .+
T Consensus 236 ~TI~~Av~a~p~~~~~~~~r~vI~vk~G~Y--~E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~dg~~T~~saT~~v-~~ 312 (538)
T PLN03043 236 TTITDAIAAAPNNSKPEDGYFVIYAREGYY--EEYVVVPKNKKNIMLIGDGINKTIITGNHSVVDGWTTFNSSTFAV-SG 312 (538)
T ss_pred cCHHHHHHhccccCCCCcceEEEEEcCeee--EEEEEeCCCCCcEEEEecCCCCeEEEeCCccCCCCccccceEEEE-EC
Confidence 3788899642 1266777778998 4778884 689999997554443 1 1 1334 48
Q ss_pred ccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEeCceec
Q 020048 154 EHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVSRCHFS 215 (332)
Q Consensus 154 ~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS~n~f~ 215 (332)
++++.|||+|++..+. ..-|+.++..++...+.+|+|.-..| |.+|+.-+...+-+++|.|.
T Consensus 313 ~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~~rq~y~~c~I~GtVDFIFG~a~avfq~c~i~ 392 (538)
T PLN03043 313 ERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAAIFQNCNLY 392 (538)
T ss_pred CCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCCCcEEEEeeEEeeccceEeecceeeeeccEEE
Confidence 9999999999976432 23455454467889999999975433 44454445556778899886
Q ss_pred cCC-----ceeeecCCCCCCCCcceeEEEeceeecCCC-------------CcCCccccCeEEEEcceEEc------Ccc
Q 020048 216 SHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR-------------QRHPRVRYAKVHLYNNYTRN------WGI 271 (332)
Q Consensus 216 ~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~-------------~R~Pr~r~G~~hv~NN~~~n------~~~ 271 (332)
-.. ++.+--.+... .+...-+.||+|.+.... +| |.-.+.++-+.+.++.+ |..
T Consensus 393 ~r~~~~~~~~~iTA~~r~~-~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGR-pW~~ysr~v~~~s~i~~~I~p~GW~~ 470 (538)
T PLN03043 393 ARKPMANQKNAFTAQGRTD-PNQNTGISIINCTIEAAPDLAMDPNSTMNFLGR-PWKPYSRTVYMQSYIGDLIQPVGWLE 470 (538)
T ss_pred EecCCCCCCceEEecCCCC-CCCCceEEEEecEEecCCcccccccccceeccC-CCCCCceEEEEecccCCeecccccCC
Confidence 421 12221111110 112236889999876432 11 22223566666666643 322
Q ss_pred ceEEEccCceEEEEceEEecC
Q 020048 272 YAVCASVDSQIYSQCNIYEAG 292 (332)
Q Consensus 272 ~ai~~~~~a~v~~egNyf~~g 292 (332)
+.-....+.-.+.|-|=.-+|
T Consensus 471 w~~~~~~~t~~y~Ey~n~GpG 491 (538)
T PLN03043 471 WNGTVGLDTIYYGEFDNYGPG 491 (538)
T ss_pred CCCCCCcCceEEEEecccCCC
Confidence 211122233456675555554
No 43
>smart00656 Amb_all Amb_all domain.
Probab=97.00 E-value=0.017 Score=52.46 Aligned_cols=132 Identities=18% Similarity=0.165 Sum_probs=82.3
Q ss_pred cCcceeeeccceEEeCCcEEEeeeccEEEeeeEEeCCCC-----CCCCc-eEEcCCCceEEEEceeeecCCCCceEeecC
Q 020048 130 SYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKG-----PDVDA-IQIKPKSKHIWIDRCSLRDYDDGLIDITRE 203 (332)
Q Consensus 130 snkTI~G~G~gitI~G~gi~i~~a~NVIIRnL~ir~g~~-----~~~Da-I~i~~~s~nVwIDHcs~s~~~Dg~idi~~~ 203 (332)
.|++|.+........+.+|.+.+++||+|.+.+|..+.. ...|+ +.+..++.+|-|-.|.|....-+++--..+
T Consensus 45 rnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~h~~~~liG~~d 124 (190)
T smart00656 45 RNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSD 124 (190)
T ss_pred eCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEecCCEEEEEccCC
Confidence 467777653322223467888889999999999997621 11344 456556788888888886544443322111
Q ss_pred C------ccEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCCCCcCCcccc-CeEEEEcceEEcC
Q 020048 204 S------TDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYTRNW 269 (332)
Q Consensus 204 s------~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~~n~ 269 (332)
. ..||+.+|+|++..- ..+. . |.-.+=+.+|+|.+.....--.+. +++.+.||||.+.
T Consensus 125 ~~~~~~~~~vT~h~N~~~~~~~-----R~P~-~--r~g~~hv~NN~~~n~~~~~~~~~~~~~v~~E~N~F~~~ 189 (190)
T smart00656 125 SDTDDGKMRVTIAHNYFGNLRQ-----RAPR-V--RFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189 (190)
T ss_pred CccccccceEEEECcEEcCccc-----CCCc-c--cCCEEEEEeeEEeCcccEeEecCCCcEEEEECeEEECC
Confidence 1 269999999985321 1110 1 111577889999887644333332 5799999999874
No 44
>PLN02773 pectinesterase
Probab=96.94 E-value=0.039 Score=54.25 Aligned_cols=146 Identities=15% Similarity=0.271 Sum_probs=84.0
Q ss_pred hhHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEeC------------------Cc-----
Q 020048 98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLTG------------------KG----- 147 (332)
Q Consensus 98 GSLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~G------------------~g----- 147 (332)
-|+++||+.- ..+++||-..|+. .+.|.|. +|+||.|++..-++.- .+
T Consensus 18 ~TIq~Aida~P~~~~~~~~I~Ik~G~Y--~E~V~I~~~k~~itl~G~~~~~TiI~~~~~a~~~~~~~~~~~~g~gT~~Sa 95 (317)
T PLN02773 18 CTVQDAIDAVPLCNRCRTVIRVAPGVY--RQPVYVPKTKNLITLAGLSPEATVLTWNNTATKIDHHQASRVIGTGTFGCG 95 (317)
T ss_pred cCHHHHHhhchhcCCceEEEEEeCceE--EEEEEECcCCccEEEEeCCCCceEEEccCccccccccccccccCcCccCce
Confidence 4788999752 2355666567988 4778884 5799999865333321 01
Q ss_pred -EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCCCce-----------------EeecCCccEE
Q 020048 148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDGLI-----------------DITRESTDIT 208 (332)
Q Consensus 148 -i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i-----------------di~~~s~nVT 208 (332)
+.+ .++|++.+||+|++..+. ..-|+.++-.++.+.+.+|.|.-..|-++ |+.-+.-..-
T Consensus 96 Tv~v-~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~gr~yf~~c~IeG~VDFIFG~g~a~ 174 (317)
T PLN02773 96 TVIV-EGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHYGKQYLRDCYIEGSVDFIFGNSTAL 174 (317)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCCCCEEEEeeEEeecccEEeeccEEE
Confidence 333 489999999999976432 22344443357889999999975544433 3333334455
Q ss_pred EeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 209 VSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 209 IS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
+.+|.|.....+.+--.+.. ......-..|++|-+...
T Consensus 175 Fe~c~i~s~~~g~ITA~~r~-~~~~~~GfvF~~c~it~~ 212 (317)
T PLN02773 175 LEHCHIHCKSAGFITAQSRK-SSQESTGYVFLRCVITGN 212 (317)
T ss_pred EEeeEEEEccCcEEECCCCC-CCCCCceEEEEccEEecC
Confidence 66666653322222111100 001112467777777553
No 45
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=96.87 E-value=0.0081 Score=63.03 Aligned_cols=120 Identities=17% Similarity=0.325 Sum_probs=82.0
Q ss_pred CCCCCh---hHHHhhhcC-----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C------Cc-------
Q 020048 93 ADDGPG---SLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------KG------- 147 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~-----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G------~g------- 147 (332)
+.+|.| ++++||+.. ..|.||+-..|+++ +.+.|. .|+||+|.|.+-|+. + .|
T Consensus 246 a~dGsg~f~TIq~Av~a~p~~~~~~r~vI~vk~GvY~--E~V~i~~~k~~v~l~G~g~~~TiIt~~~~~~~~g~~T~~sa 323 (553)
T PLN02708 246 CKDGNCCYKTVQEAVNAAPDNNGDRKFVIRIKEGVYE--ETVRVPLEKKNVVFLGDGMGKTVITGSLNVGQPGISTYNTA 323 (553)
T ss_pred CCCCCCCccCHHHHHHhhhhccCCccEEEEEeCceEE--eeeeecCCCccEEEEecCCCceEEEecCccCCCCcCccceE
Confidence 445554 688898652 34667777789984 777774 689999997655543 1 12
Q ss_pred -EEEeeeccEEEeeeEEeCCCCCC-CCceEEcCCCceEEEEceeeecCC-----------------CCceEeecCCccEE
Q 020048 148 -LRLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDIT 208 (332)
Q Consensus 148 -i~i~~a~NVIIRnL~ir~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dg~idi~~~s~nVT 208 (332)
+.+ .+++++.|||+|++..+.+ .-|+.++..++.+.+.+|.|.-.. .|.+|+.-+...+-
T Consensus 324 T~~v-~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtVDFIFG~a~av 402 (553)
T PLN02708 324 TVGV-LGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSLRQFYKSCRIQGNVDFIFGNSAAV 402 (553)
T ss_pred EEEE-EcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCCceEEEeeEEeecCCEEecCceEE
Confidence 334 4899999999999865432 345555546889999999997443 44555555555677
Q ss_pred EeCceec
Q 020048 209 VSRCHFS 215 (332)
Q Consensus 209 IS~n~f~ 215 (332)
+++|.|.
T Consensus 403 fq~c~i~ 409 (553)
T PLN02708 403 FQDCAIL 409 (553)
T ss_pred EEccEEE
Confidence 8888876
No 46
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.86 E-value=0.05 Score=52.90 Aligned_cols=110 Identities=16% Similarity=0.335 Sum_probs=65.0
Q ss_pred hhHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceE-EeCC-------------cEEEeeeccE
Q 020048 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVK-LTGK-------------GLRLKECEHV 156 (332)
Q Consensus 98 GSLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~git-I~G~-------------gi~i~~a~NV 156 (332)
-++++||+. ...+++|+-..|+.+ +.|.|. +++||.|.|..-+ |.+. .+.+ .++++
T Consensus 13 ~TIq~Aida~p~~~~~~~~I~I~~G~Y~--E~V~i~~~k~~v~l~G~~~~~tiI~~~~~~~~~~~t~~saT~~v-~a~~f 89 (298)
T PF01095_consen 13 TTIQAAIDAAPDNNTSRYTIFIKPGTYR--EKVTIPRSKPNVTLIGEGRDKTIITGNDNAADGGGTFRSATFSV-NADDF 89 (298)
T ss_dssp SSHHHHHHHS-SSSSS-EEEEE-SEEEE----EEE-STSTTEEEEES-TTTEEEEE---TTTB-HCGGC-SEEE--STT-
T ss_pred cCHHHHHHhchhcCCceEEEEEeCeeEc--cccEeccccceEEEEecCCCceEEEEeccccccccccccccccc-cccce
Confidence 458899975 234566676789984 778885 5899999975433 3331 1455 48999
Q ss_pred EEeeeEEeCCCC---CCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceec
Q 020048 157 IICNLEFEGGKG---PDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (332)
Q Consensus 157 IIRnL~ir~g~~---~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~ 215 (332)
+++||+|+...+ ...-||.+ .++++.+.+|.|.-..|-++.- ....-+.+|+|.
T Consensus 90 ~~~nit~~Nt~g~~~~qAvAl~~--~~d~~~f~~c~~~g~QDTL~~~---~~r~y~~~c~Ie 146 (298)
T PF01095_consen 90 TAENITFENTAGPSGGQAVALRV--SGDRAAFYNCRFLGYQDTLYAN---GGRQYFKNCYIE 146 (298)
T ss_dssp EEEEEEEEEHCSGSG----SEEE--T-TSEEEEEEEEE-STT-EEE----SSEEEEES-EEE
T ss_pred eeeeeEEecCCCCcccceeeeee--cCCcEEEEEeEEccccceeeec---cceeEEEeeEEE
Confidence 999999997532 23356666 4688999999998877765532 234555666665
No 47
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=96.85 E-value=0.026 Score=58.93 Aligned_cols=152 Identities=18% Similarity=0.341 Sum_probs=93.2
Q ss_pred CCCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe--------CCc------
Q 020048 92 LADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GKG------ 147 (332)
Q Consensus 92 l~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~--------G~g------ 147 (332)
++.+|.| ++++||++. ..|+||+-..|++. +.+.|. +|+||.|.|.+-|+. |.+
T Consensus 222 Va~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~itl~G~g~~~TiIt~~~~~~dg~~T~~SaT 299 (530)
T PLN02933 222 VAIDGTGNFTTINEAVSAAPNSSETRFIIYIKGGEYF--ENVELPKKKTMIMFIGDGIGKTVIKANRSRIDGWSTFQTAT 299 (530)
T ss_pred ECCCCCCCccCHHHHHHhchhcCCCcEEEEEcCceEE--EEEEecCCCceEEEEEcCCCCcEEEeCCccCCCCccccceE
Confidence 4455655 688999752 34666666789985 778884 578999997554433 111
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCCC-----------------ceEeecCCccEEE
Q 020048 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITV 209 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~idi~~~s~nVTI 209 (332)
+.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-.-|- .+|+.-+....-+
T Consensus 300 ~~v-~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~Rqyy~~C~IeGtVDFIFG~a~avF 378 (530)
T PLN02933 300 VGV-KGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSAKQFYRECDIYGTIDFIFGNAAVVF 378 (530)
T ss_pred EEE-ECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCCceEEEeeEEecccceeccCceEEE
Confidence 344 489999999999976532 224444444588999999999754443 4444444455667
Q ss_pred eCceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 210 SRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 210 S~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
++|.|.-.. ++.+.-.+... .+...-..|++|.+...
T Consensus 379 q~C~i~~~~~~~~~~~~iTAq~r~~-~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 379 QNCSLYARKPNPNHKIAFTAQSRNQ-SDQPTGISIISSRILAA 420 (530)
T ss_pred eccEEEEeccCCCCceEEEecCCCC-CCCCceEEEEeeEEecC
Confidence 778775321 22222111100 11123588999988653
No 48
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=96.85 E-value=0.025 Score=59.29 Aligned_cols=151 Identities=18% Similarity=0.355 Sum_probs=92.9
Q ss_pred CCCCCh---hHHHhhhcC------CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc-------
Q 020048 93 ADDGPG---SLREGCRMK------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG------- 147 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~------~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-----~g------- 147 (332)
+.+|.| +.++||++. ..|+||+-..|++ ++.+.|. +|+|+.|.|.+-|+. + .+
T Consensus 228 a~dGsG~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TvIt~~~~~~~~~~T~~Sa 305 (539)
T PLN02995 228 AKDGSGHFNTVQAAIDVAGRRKVTSGRFVIYVKRGIY--QENINVRLNNDDIMLVGDGMRSTIITGGRSVKGGYTTYNSA 305 (539)
T ss_pred CCCCCCCccCHHHHHHhcccccCCCceEEEEEeCCEe--EEEEEecCCCCcEEEEEcCCCCeEEEeCCccCCCCcccceE
Confidence 455666 789999752 2366666668998 4777774 689999998654443 2 11
Q ss_pred -EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCCC-----------------ceEeecCCccEE
Q 020048 148 -LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDIT 208 (332)
Q Consensus 148 -i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~idi~~~s~nVT 208 (332)
+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|.-..|- .+|+.-+....-
T Consensus 306 T~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~av 384 (539)
T PLN02995 306 TAGI-EGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHSQRQFYRECYIYGTVDFIFGNAAAV 384 (539)
T ss_pred EEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCCCceEEEeeEEeeccceEecccceE
Confidence 333 489999999999976532 234555544688999999999755444 344444445566
Q ss_pred EeCceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 209 VSRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 209 IS~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
+++|.|.... .+.+--.+... .+...-..|++|.+...
T Consensus 385 f~~C~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 385 FQNCIILPRRPLKGQANVITAQGRAD-PFQNTGISIHNSRILPA 427 (539)
T ss_pred EeccEEEEecCCCCCcceEecCCCCC-CCCCceEEEEeeEEecC
Confidence 7777775321 11111111000 11123678899988664
No 49
>PLN02634 probable pectinesterase
Probab=96.81 E-value=0.038 Score=55.17 Aligned_cols=97 Identities=16% Similarity=0.251 Sum_probs=64.3
Q ss_pred hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe------------CC--------cEEEe
Q 020048 99 SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT------------GK--------GLRLK 151 (332)
Q Consensus 99 SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~------------G~--------gi~i~ 151 (332)
|+++||++- ..+++|+-..|+. .+.|.|. +|+||.|.|...|+. |. .+.+
T Consensus 70 TIQaAIda~P~~~~~r~vI~Ik~GvY--~EkV~Ip~~k~~ItL~G~g~~~TiIt~~~~a~~~~~~g~~~~T~~SaTv~V- 146 (359)
T PLN02634 70 SVQDAVDSVPKNNTMSVTIKINAGFY--REKVVVPATKPYITFQGAGRDVTAIEWHDRASDRGANGQQLRTYQTASVTV- 146 (359)
T ss_pred CHHHHHhhCcccCCccEEEEEeCceE--EEEEEEcCCCCeEEEEecCCCceEEEecccccccCCCCcccccccceEEEE-
Confidence 588888752 2355555568998 4778773 689999997655543 10 1333
Q ss_pred eeccEEEeeeEEeCCCC------CCCCceEEcCCCceEEEEceeeecCCCCce
Q 020048 152 ECEHVIICNLEFEGGKG------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (332)
Q Consensus 152 ~a~NVIIRnL~ir~g~~------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 198 (332)
.+++++.+||+|++..+ ...-|+.++-.++.+.+.+|.|.-..|-++
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~ 199 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLC 199 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceee
Confidence 48999999999997642 122344443357889999999976555544
No 50
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=96.75 E-value=0.028 Score=58.99 Aligned_cols=151 Identities=18% Similarity=0.433 Sum_probs=93.7
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-------Cc------E
Q 020048 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------KG------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-------~g------i 148 (332)
+.+|.| ++++||++ ...|.||+-..|++ ++.+.|. +|+||.|.|.+.|+. + .+ +
T Consensus 241 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~dg~~T~~SaT~ 318 (548)
T PLN02301 241 AKDGSGKYKTVKEAVASAPDNSKTRYVIYVKKGTY--KENVEIGKKKKNLMLVGDGMDSTIITGSLNVIDGSTTFRSATV 318 (548)
T ss_pred CCCCCCCcccHHHHHHhhhhcCCceEEEEEeCcee--eEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCCceeeEEE
Confidence 445665 78899975 23467777778998 4778884 689999998655543 2 11 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS 210 (332)
.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-..| |.+|+.-+....-++
T Consensus 319 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avfq 397 (548)
T PLN02301 319 AA-VGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSLRQFYRDSYITGTVDFIFGNAAVVFQ 397 (548)
T ss_pred EE-ECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCCcEEEEeeEEEeccceecccceeEEe
Confidence 33 489999999999976532 22344444357899999999975444 444444455567778
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
+|.|.-.. ++.+--.+... .+...-..||+|.+...
T Consensus 398 ~c~i~~~~~~~~~~~~iTAqgr~~-~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 398 NCKIVARKPMAGQKNMVTAQGRTD-PNQNTGISIQKCDIIAS 438 (548)
T ss_pred ccEEEEecCCCCCCceEEecCCCC-CCCCCEEEEEeeEEecC
Confidence 88775321 11111111000 11123688999988654
No 51
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=96.75 E-value=0.033 Score=57.77 Aligned_cols=153 Identities=17% Similarity=0.361 Sum_probs=95.4
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G~-----g--------i 148 (332)
+.+|.| ++++||++. ..|+||+-..|++ ++.+.|. +|+||.|.|.+-|+. +. + +
T Consensus 202 a~dGsG~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~nItliGdg~~~TiIt~n~~~~~g~~T~~SATv 279 (509)
T PLN02488 202 AKDGSGKYNTVNAAIAAAPEHSRKRFVIYIKTGVY--DEIVRIGSTKPNLTLIGDGQDSTIITGNLSASNGKRTFYTATV 279 (509)
T ss_pred CCCCCCCccCHHHHHHhchhcCCCcEEEEEeCCee--EEEEEecCCCccEEEEecCCCceEEEEcccccCCCCceeeEEE
Confidence 344655 688999652 3466676678988 4778884 689999998655543 21 1 2
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCCC-----------------ceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDDG-----------------LIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~Dg-----------------~idi~~~s~nVTIS 210 (332)
.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|+|.-..|- .+|+.-+...+-++
T Consensus 280 ~v-~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq 358 (509)
T PLN02488 280 AS-NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQ 358 (509)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEE
Confidence 33 488999999999976532 234555554688999999999754443 44444444557788
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCCC
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQ 249 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~ 249 (332)
+|.|.... ++.+--.+... .....-..||+|-+.....
T Consensus 359 ~C~I~sr~~~~~~~~~ITAq~R~~-~~~~tGfvf~~C~it~~~~ 401 (509)
T PLN02488 359 FCQIVARQPMMGQSNVITAQSRES-KDDNSGFSIQKCNITASSD 401 (509)
T ss_pred ccEEEEecCCCCCCEEEEeCCCCC-CCCCcEEEEEeeEEecCCc
Confidence 88886321 12221111100 1112358899998876544
No 52
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=96.74 E-value=0.034 Score=58.03 Aligned_cols=151 Identities=17% Similarity=0.367 Sum_probs=92.0
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-----Cc--------E
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-----KG--------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-----~g--------i 148 (332)
+.+|.| ++++||++- ..|++|+-..|++ ++.+.|. +|+||.|.|.+-|+. + .| +
T Consensus 211 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY--~E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~ 288 (520)
T PLN02201 211 AADGTGNFTTIMDAVLAAPDYSTKRYVIYIKKGVY--LENVEIKKKKWNIMMVGDGIDATVITGNRSFIDGWTTFRSATF 288 (520)
T ss_pred cCCCCCCccCHHHHHHhchhcCCCcEEEEEeCcee--EEEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcccceEEE
Confidence 345555 788999652 3366677678988 4778884 579999997544433 1 11 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS 210 (332)
.+ .+++++.+||+|++..+. ..-|+.++-.++...+.+|.|.-..| |.+|+.-+....-++
T Consensus 289 ~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 367 (520)
T PLN02201 289 AV-SGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTMRQFYRECRITGTVDFIFGDATAVFQ 367 (520)
T ss_pred EE-ECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCCCEEEEeeEEeecccEEecCceEEEE
Confidence 33 489999999999976532 23444444457899999999975444 344444445566778
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
+|.|.... .+.+--.+... .+...-..||+|-+...
T Consensus 368 ~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 368 NCQILAKKGLPNQKNTITAQGRKD-PNQPTGFSIQFSNISAD 408 (520)
T ss_pred ccEEEEecCCCCCCceEEecCCCC-CCCCcEEEEEeeEEecC
Confidence 88776321 12221111100 11123578899988653
No 53
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=96.74 E-value=0.067 Score=56.06 Aligned_cols=191 Identities=18% Similarity=0.370 Sum_probs=109.1
Q ss_pred hhHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEE-eCC-----c--------EEEeeeccE
Q 020048 98 GSLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKL-TGK-----G--------LRLKECEHV 156 (332)
Q Consensus 98 GSLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI-~G~-----g--------i~i~~a~NV 156 (332)
-++++||++ +..|.|||-..|++ .+.+.|. +|+||.|.|.+-++ .+. + +.+ .++++
T Consensus 245 ~TIq~Av~a~p~~~~~r~vI~Vk~GvY--~E~V~I~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~T~~saT~~v-~~~~F 321 (537)
T PLN02506 245 RTITEAINEAPNHSNRRYIIYVKKGVY--KENIDMKKKKTNIMLVGDGIGQTVVTGNRNFMQGWTTFRTATVAV-SGRGF 321 (537)
T ss_pred cCHHHHHHhchhcCCCcEEEEEeCCee--eEEEeccCCCceEEEEEcCCCCeEEEeCccccCCCCcccceEEEE-EcCCe
Confidence 468889975 23467777778988 4777774 68999999755444 221 1 233 58999
Q ss_pred EEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCC-----------------CCceEeecCCccEEEeCceeccCC
Q 020048 157 IICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRCHFSSHD 218 (332)
Q Consensus 157 IIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dg~idi~~~s~nVTIS~n~f~~h~ 218 (332)
+.|||+|++..+. ..-|+.++-.++++.+.+|.|.-.. .|.+|+.-+....-+++|.|.-..
T Consensus 322 ~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~~rqyy~~C~I~GtVDFIFG~a~avfq~C~i~~r~ 401 (537)
T PLN02506 322 IARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRV 401 (537)
T ss_pred EEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecCCceEEEeeEEecccceEccCceeEEeccEEEEcc
Confidence 9999999976432 2234444435889999999997543 344455445556778888886421
Q ss_pred -----ceeeecCCCCCCCCcceeEEEeceeecCCC----CcCCccccCeEEEEcceEEc------CccceEEEccCceEE
Q 020048 219 -----KTMLIGADPSHVADRCIRVTIHHCFFDGTR----QRHPRVRYAKVHLYNNYTRN------WGIYAVCASVDSQIY 283 (332)
Q Consensus 219 -----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~----~R~Pr~r~G~~hv~NN~~~n------~~~~ai~~~~~a~v~ 283 (332)
++.+--.+.. ..+...-..||+|.+.... +| |.-.+.++-+.|.++.. |..+.-......-.+
T Consensus 402 ~~~~~~~~iTA~~r~-~~~~~~G~vf~~c~i~~~~~~yLGR-PW~~~sr~v~~~t~l~~~I~p~GW~~w~~~~~~~t~~y 479 (537)
T PLN02506 402 PLPLQKVTITAQGRK-SPHQSTGFSIQDSYVLATQPTYLGR-PWKQYSRTVFMNTYMSQLVQPRGWLEWYGNFALGTLWY 479 (537)
T ss_pred CCCCCCceEEccCCC-CCCCCcEEEEEcCEEccCCceEEec-CCCCCceEEEEecCCCCeecCcCcCCCCCCCCCCceEE
Confidence 1222111100 0111235788888775421 11 22223456666666543 322111112233456
Q ss_pred EEceEEecCC
Q 020048 284 SQCNIYEAGQ 293 (332)
Q Consensus 284 ~egNyf~~g~ 293 (332)
.|-|=+-+|.
T Consensus 480 ~Ey~n~GpGa 489 (537)
T PLN02506 480 GEYRNYGPGA 489 (537)
T ss_pred EEeccccCCC
Confidence 6766556653
No 54
>PLN02314 pectinesterase
Probab=96.65 E-value=0.034 Score=58.85 Aligned_cols=172 Identities=16% Similarity=0.338 Sum_probs=102.5
Q ss_pred CCCCCh---hHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-------Cc------E
Q 020048 93 ADDGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------KG------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-------~g------i 148 (332)
+.+|.| ++++||+. +..|+||+-..|+++ +.+.|. .|+|+.|.|.+-||. + .. +
T Consensus 283 a~dGsg~f~TI~~Av~a~p~~~~~r~vI~ik~G~Y~--E~V~i~~~k~~i~l~G~g~~~tiIt~~~~~~~g~~t~~saT~ 360 (586)
T PLN02314 283 AKDGSGDVKTINEAVASIPKKSKSRFVIYVKEGTYV--ENVLLDKSKWNVMIYGDGKDKTIISGSLNFVDGTPTFSTATF 360 (586)
T ss_pred CCCCCCCccCHHHHHhhccccCCceEEEEEcCceEE--EEEEecCCCceEEEEecCCCCcEEEecCCcCCCCCccceEEE
Confidence 334544 68899975 234677777789984 778774 589999997554443 2 11 3
Q ss_pred EEeeeccEEEeeeEEeCCCCCC-CCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGPD-VDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~~-~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS 210 (332)
.+ .+++++.|||+|++..+.. .-|+.++-+++...+.+|.|.-..| |.+|+.-+...+-++
T Consensus 361 ~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avf~ 439 (586)
T PLN02314 361 AA-AGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQ 439 (586)
T ss_pred EE-EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCCCCEEEEeeEEEeccceeccCceeeee
Confidence 33 4899999999999765422 2445554468899999999975444 344444455567778
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCCC-cC------CccccCeEEEEcceEEc
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQ-RH------PRVRYAKVHLYNNYTRN 268 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~-R~------Pr~r~G~~hv~NN~~~n 268 (332)
+|.|.-.. ++.+--.+... .+...-+.||+|.+..... .. |.-.+.++-+.|.++.+
T Consensus 440 ~c~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~ 508 (586)
T PLN02314 440 NCNIQPRQPLPNQFNTITAQGKKD-PNQNTGISIQRCTISAFGNLTAPTYLGRPWKDFSTTVIMQSYIGS 508 (586)
T ss_pred ccEEEEecCCCCCCceEecCCCCC-CCCCCEEEEEeeEEecCCcccccccccCCCCCCceEEEEecccCC
Confidence 88885321 11111111000 1112368899998866432 11 11123456666666654
No 55
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.62 E-value=0.049 Score=57.49 Aligned_cols=152 Identities=18% Similarity=0.406 Sum_probs=94.1
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C------C--c------
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G------K--G------ 147 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G------~--g------ 147 (332)
+.+|.| ++++||++- ..|+||+-..|++ ++.+.|. +|+||.|.|.+-|+. + + +
T Consensus 264 a~dGsG~f~TIq~Av~a~p~~~~~r~vI~Ik~GvY--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~~T~~saT 341 (572)
T PLN02990 264 AQDGSGQYKTINEALNAVPKANQKPFVIYIKQGVY--NEKVDVTKKMTHVTFIGDGPTKTKITGSLNFYIGKVKTYLTAT 341 (572)
T ss_pred CCCCCCCCcCHHHHHhhCcccCCceEEEEEeCcee--EEEEEecCCCCcEEEEecCCCceEEEeccccCCCCccceeeeE
Confidence 445655 788999753 3466666678988 4778884 689999997544433 1 1 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCC-----------------CCceEeecCCccEEE
Q 020048 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITV 209 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dg~idi~~~s~nVTI 209 (332)
+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|.-.. .|.+|+.-+....-+
T Consensus 342 ~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 420 (572)
T PLN02990 342 VAI-NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHSHRQFFRDCTVSGTVDFIFGDAKVVL 420 (572)
T ss_pred EEE-EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCCCcEEEEeeEEecccceEccCceEEE
Confidence 233 489999999999976532 2344544446788999999997543 344455445556778
Q ss_pred eCceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCC
Q 020048 210 SRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 210 S~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~ 248 (332)
++|.|.-.. ++.+--.+... .....-..|++|.+....
T Consensus 421 ~~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 421 QNCNIVVRKPMKGQSCMITAQGRSD-VRESTGLVLQNCHITGEP 463 (572)
T ss_pred EccEEEEecCCCCCceEEEeCCCCC-CCCCceEEEEeeEEecCc
Confidence 888886321 12222111100 111235889999886643
No 56
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=96.61 E-value=0.017 Score=60.76 Aligned_cols=194 Identities=14% Similarity=0.330 Sum_probs=110.2
Q ss_pred CCCh---hHHHhhhc----CCCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe--------CC------cEEE
Q 020048 95 DGPG---SLREGCRM----KEPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GLRL 150 (332)
Q Consensus 95 sG~G---SLr~Al~~----~~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~--------G~------gi~i 150 (332)
+|.| +.++||+. +..|.||+-..|+++ +.+.|. .|+||.|.|.+-||. |. .+.+
T Consensus 265 dGsg~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~--E~V~i~~~k~~i~~~G~g~~~tiIt~~~~~~dg~~t~~saT~~v 342 (565)
T PLN02468 265 DGSGKYKTISEALKDVPEKSEKRTIIYVKKGVYF--ENVRVEKKKWNVVMVGDGMSKTIVSGSLNFVDGTPTFSTATFAV 342 (565)
T ss_pred CCCCCccCHHHHHHhchhcCCCcEEEEEeCCceE--EEEEecCCCCeEEEEecCCCCCEEEeCCccCCCCCccceeeeeE
Confidence 4555 67888865 334667776789984 778884 578999997654443 11 1333
Q ss_pred eeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCC-----------------CCceEeecCCccEEEeCc
Q 020048 151 KECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSRC 212 (332)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dg~idi~~~s~nVTIS~n 212 (332)
.+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-.. .|.+|+.-+...+-+++|
T Consensus 343 -~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~~rq~y~~C~I~GtvDFIFG~a~avfq~c 421 (565)
T PLN02468 343 -FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHAQRQFYRECNIYGTVDFIFGNSAVVFQNC 421 (565)
T ss_pred -ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCCCceEEEeeEEecccceeeccceEEEecc
Confidence 489999999999976532 2234444446889999999996443 344555555566778888
Q ss_pred eeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCCC---------cCCccccCeEEEEcceEEc------Cccc
Q 020048 213 HFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTRQ---------RHPRVRYAKVHLYNNYTRN------WGIY 272 (332)
Q Consensus 213 ~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~---------R~Pr~r~G~~hv~NN~~~n------~~~~ 272 (332)
.|.-.. ++.+--.+... .+...-..||+|.+..... | |.-.+.++-+.|.++.. |..+
T Consensus 422 ~i~~~~~~~~~~~~iTA~~r~~-~~~~~G~vf~~c~i~~~~~~~~~~~yLGR-PW~~~sr~v~~~s~~~~~I~p~GW~~w 499 (565)
T PLN02468 422 NILPRRPMKGQQNTITAQGRTD-PNQNTGISIQNCTILPLGDLTSVKTFLGR-PWKNYSTTVIMHSMMGSLIDPKGWLPW 499 (565)
T ss_pred EEEEecCCCCCCceEEecCCCC-CCCCceEEEEccEEecCCCccccceeeec-CCCCCceEEEEecccCCeEccccCCCC
Confidence 885321 11111111000 1112357889988765321 1 22223455566665543 3222
Q ss_pred eEEEccCceEEEEceEEecCC
Q 020048 273 AVCASVDSQIYSQCNIYEAGQ 293 (332)
Q Consensus 273 ai~~~~~a~v~~egNyf~~g~ 293 (332)
.-....+.-.+.|-+=+-+|.
T Consensus 500 ~~~~~~~t~~y~Ey~n~GpGa 520 (565)
T PLN02468 500 TGDTAPPTIFYAEFQNFGPGA 520 (565)
T ss_pred CCCCCcCceEEEEeecccCCC
Confidence 111122334567766665553
No 57
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=96.60 E-value=0.042 Score=57.96 Aligned_cols=150 Identities=15% Similarity=0.391 Sum_probs=93.0
Q ss_pred CCCCCh---hHHHhhhcC-------CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-------C-----
Q 020048 93 ADDGPG---SLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------K----- 146 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~-------~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-------~----- 146 (332)
+.+|.| +.++||++. ..|+||+-..|++ ++.+.|. +|+||.|.|.+-|+. + .
T Consensus 255 a~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y--~E~V~i~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~S 332 (566)
T PLN02713 255 NQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVY--EEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNS 332 (566)
T ss_pred CCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEE--EEEEEecCCCceEEEEecCCCCcEEEcCCcccCCCccccc
Confidence 445655 688899652 2356666678998 4778884 688999997544433 2 1
Q ss_pred -cEEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccE
Q 020048 147 -GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDI 207 (332)
Q Consensus 147 -gi~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nV 207 (332)
.+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|.-..| |.+|+.-+...+
T Consensus 333 aT~~v-~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~a 411 (566)
T PLN02713 333 ATFAV-VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAV 411 (566)
T ss_pred eeEEE-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEeeEEecccceecccceE
Confidence 1344 489999999999986432 22445444468889999999975444 344444455567
Q ss_pred EEeCceeccCC-----ceeee--cCCCCCCCCcceeEEEeceeecCCC
Q 020048 208 TVSRCHFSSHD-----KTMLI--GADPSHVADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 208 TIS~n~f~~h~-----k~~Li--G~~d~~~~d~~~~VT~hhNlf~~~~ 248 (332)
-+++|.|.... ++.+- |..+ .+...-..||+|.+....
T Consensus 412 vfq~C~i~~~~~~~~~~~~iTAq~r~~---~~~~~G~vf~~c~i~~~~ 456 (566)
T PLN02713 412 VFQNCNLYPRLPMQGQFNTITAQGRTD---PNQNTGTSIQNCTIKAAD 456 (566)
T ss_pred EEeccEEEEecCCCCCcceeeecCCCC---CCCCCEEEEEcCEEecCC
Confidence 77888875321 11111 1111 111236889999886543
No 58
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=96.59 E-value=0.045 Score=58.02 Aligned_cols=152 Identities=18% Similarity=0.345 Sum_probs=92.6
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-CC-----c--------E
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-GK-----G--------L 148 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G~-----g--------i 148 (332)
+.+|.| ++++||++. ..|+||+-..|+++ +.+.|. +|+||.|.|.+-|+. +. + +
T Consensus 290 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~saT~ 367 (596)
T PLN02745 290 AKDGSGNFTTISDALAAMPAKYEGRYVIYVKQGIYD--ETVTVDKKMVNVTMYGDGSQKTIVTGNKNFADGVRTFRTATF 367 (596)
T ss_pred CCCCCCCcccHHHHHHhccccCCceEEEEEeCCeeE--EEEEEcCCCceEEEEecCCCceEEEECCcccCCCcceeeEEE
Confidence 334555 788999762 34666666689884 778884 589999998654443 21 1 3
Q ss_pred EEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEe
Q 020048 149 RLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVS 210 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS 210 (332)
.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-.-| |.+|+.-+....-++
T Consensus 368 ~v-~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf~ 446 (596)
T PLN02745 368 VA-LGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQTHRQFYRSCVITGTIDFIFGDAAAIFQ 446 (596)
T ss_pred EE-EcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCCCcEEEEeeEEEeeccEEecceeEEEE
Confidence 33 489999999999976432 22344444358899999999975444 444444455566777
Q ss_pred CceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCC
Q 020048 211 RCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 211 ~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~ 248 (332)
+|.|.-.. .+.+--.+.. ..+...-..|++|.+....
T Consensus 447 ~C~i~~~~~~~~~~~~iTAq~r~-~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 447 NCLIFVRKPLPNQQNTVTAQGRV-DKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ecEEEEecCCCCCCceEEecCCC-CCCCCceEEEEeeEEecCc
Confidence 88775321 1111111100 0111236888999887644
No 59
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=96.55 E-value=0.015 Score=61.51 Aligned_cols=148 Identities=18% Similarity=0.400 Sum_probs=93.4
Q ss_pred CCCCh---hHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe-C-------Cc------EE
Q 020048 94 DDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT-G-------KG------LR 149 (332)
Q Consensus 94 dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~-G-------~g------i~ 149 (332)
.+|.| ++++||++. ..|.||+-..|++ .+.+.|. .|+||+|.|.+-||. + .. +.
T Consensus 281 ~dGsG~f~TI~~Av~a~p~~~~~r~vI~ik~GvY--~E~V~i~~~k~ni~l~Gdg~~~TiIt~~~~~~~g~~t~~sat~~ 358 (587)
T PLN02313 281 ADGSGDFTTVAAAVAAAPEKSNKRFVIHIKAGVY--RENVEVTKKKKNIMFLGDGRGKTIITGSRNVVDGSTTFHSATVA 358 (587)
T ss_pred CCCCCCCccHHHHHHhccccCCceEEEEEeCcee--EEEEEeCCCCCeEEEEecCCCccEEEeCCcccCCCCceeeEEEE
Confidence 34554 688899752 3466777678988 4778885 588999997654443 2 11 23
Q ss_pred EeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCC-----------------CCceEeecCCccEEEeC
Q 020048 150 LKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYD-----------------DGLIDITRESTDITVSR 211 (332)
Q Consensus 150 i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~-----------------Dg~idi~~~s~nVTIS~ 211 (332)
+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|+|.-.. .|.+|+.-+...+-+++
T Consensus 359 v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~rq~y~~c~I~GtvDFIFG~a~avfq~ 437 (587)
T PLN02313 359 A-VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSNRQFFVKCHITGTVDFIFGNAAAVLQD 437 (587)
T ss_pred E-ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCCcEEEEeeEEeeccceeccceeEEEEc
Confidence 3 489999999999976532 2234444446889999999997443 44455555556677899
Q ss_pred ceeccCC-----ceeee--cCCCCCCCCcceeEEEeceeecCC
Q 020048 212 CHFSSHD-----KTMLI--GADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 212 n~f~~h~-----k~~Li--G~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
|.|.-.. ++.+- |..+. +...-+.||+|.+...
T Consensus 438 c~i~~r~~~~~~~~~iTAqgr~~~---~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 438 CDINARRPNSGQKNMVTAQGRSDP---NQNTGIVIQNCRIGGT 477 (587)
T ss_pred cEEEEecCCCCCcceEEecCCCCC---CCCceEEEEecEEecC
Confidence 9886321 12221 22221 1123688999988543
No 60
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=96.54 E-value=0.033 Score=58.27 Aligned_cols=114 Identities=20% Similarity=0.429 Sum_probs=75.3
Q ss_pred cCcceeeeccceEEeC---CcEEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeec----
Q 020048 130 SYKTIDGRGQRVKLTG---KGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITR---- 202 (332)
Q Consensus 130 snkTI~G~G~gitI~G---~gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~---- 202 (332)
.|+++.|. +|.. ..+....++|+.++||+|..-.....||+.+. .++||.|+.|.|+-+.|- +-++.
T Consensus 247 ~NV~~~g~----~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~-sc~NvlI~~~~fdtgDD~-I~iksg~~~ 320 (542)
T COG5434 247 RNVLLEGL----NIKNSPLWTVHPVDCDNLTFRNLTIDANRFDNTDGFDPG-SCSNVLIEGCRFDTGDDC-IAIKSGAGL 320 (542)
T ss_pred ceEEEeee----EecCCCcEEEeeecccCceecceEEECCCCCCCCccccc-cceeEEEeccEEecCCce-EEeecccCC
Confidence 45566654 2322 23455679999999999986554467999996 899999999999985444 54542
Q ss_pred -------CCccEEEeCceeccCCceeeecCCCCCCCCcc-eeEEEeceeecCCCCcCCcc
Q 020048 203 -------ESTDITVSRCHFSSHDKTMLIGADPSHVADRC-IRVTIHHCFFDGTRQRHPRV 254 (332)
Q Consensus 203 -------~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~-~~VT~hhNlf~~~~~R~Pr~ 254 (332)
.+.+|+|++|+|..-.-+..+|+.- +++ .+|++-.|.|.+ ..|-=|+
T Consensus 321 ~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~~~-~d~GLRi 375 (542)
T COG5434 321 DGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVMDN-TDRGLRI 375 (542)
T ss_pred cccccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeeecc-Ccceeee
Confidence 2457999999998433334445432 122 367777887776 4444444
No 61
>PLN02671 pectinesterase
Probab=96.36 E-value=0.12 Score=51.77 Aligned_cols=97 Identities=14% Similarity=0.219 Sum_probs=64.8
Q ss_pred hhHHHhhhcC----CCeEEEEeeceEEEecceeEec---cCcceeeecc---ceEEeC-----------C--------cE
Q 020048 98 GSLREGCRMK----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ---RVKLTG-----------K--------GL 148 (332)
Q Consensus 98 GSLr~Al~~~----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~---gitI~G-----------~--------gi 148 (332)
-|+++||++- ..+++|+-..|+. .+.|.|. +++||.|.|. ...|.. . .+
T Consensus 72 ~TIQ~AIdavP~~~~~~~~I~Ik~GvY--~EkV~I~~~k~~Itl~G~g~~~~~TvIt~~~~a~~~~~~g~~~gT~~SaTv 149 (359)
T PLN02671 72 LTVQGAVDMVPDYNSQRVKIYILPGIY--REKVLVPKSKPYISFIGNESRAGDTVISWNDKASDLDSNGFELGTYRTASV 149 (359)
T ss_pred cCHHHHHHhchhcCCccEEEEEeCceE--EEEEEECCCCCeEEEEecCCCCCCEEEEcCCcccccccCCccccceeeEEE
Confidence 3688999752 2355566568987 4778883 6889999863 333431 0 03
Q ss_pred EEeeeccEEEeeeEEeCCCC-------CCCCceEEcCCCceEEEEceeeecCCCCceE
Q 020048 149 RLKECEHVIICNLEFEGGKG-------PDVDAIQIKPKSKHIWIDRCSLRDYDDGLID 199 (332)
Q Consensus 149 ~i~~a~NVIIRnL~ir~g~~-------~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~id 199 (332)
.+ .+++++.+||+|++... ...-|+.+ .++++.+.+|.|.-..|-+++
T Consensus 150 ~v-~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv--~gDra~f~~c~f~G~QDTLy~ 204 (359)
T PLN02671 150 TI-ESDYFCATGITFENTVVAEPGGQGMQAVALRI--SGDKAFFYKVRVLGAQDTLLD 204 (359)
T ss_pred EE-ECCceEEEeeEEEcCCCCCCCCCCccEEEEEE--cCccEEEEcceEeccccccEe
Confidence 33 48999999999997631 12334455 578899999999877666654
No 62
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=96.24 E-value=0.085 Score=55.89 Aligned_cols=151 Identities=19% Similarity=0.403 Sum_probs=93.3
Q ss_pred CCCCCh---hHHHhhhcC----CCeEEEEeeceEEEecc-eeEec---cCcceeeeccceEEe-CC-----c--------
Q 020048 93 ADDGPG---SLREGCRMK----EPLWIVFEVSGTIHLRS-HLSVS---SYKTIDGRGQRVKLT-GK-----G-------- 147 (332)
Q Consensus 93 ~dsG~G---SLr~Al~~~----~Pr~IVF~VsGtI~L~~-~l~V~---snkTI~G~G~gitI~-G~-----g-------- 147 (332)
+.+|.| ++++||++- ..|+||+-..|++. + .+.|. +|+||.|.|.+-||. +. +
T Consensus 277 a~dGsG~f~TIq~Ai~a~P~~~~~r~vI~Ik~G~Y~--E~~v~i~~~k~ni~l~G~g~~~TiIt~~~~~~~~~~t~~saT 354 (587)
T PLN02484 277 SKDGNGTFKTISEAIKKAPEHSSRRTIIYVKAGRYE--ENNLKVGRKKTNLMFIGDGKGKTVITGGKSIFDNLTTFHTAS 354 (587)
T ss_pred CCCCCCCcccHHHHHHhccccCCCcEEEEEeCCEEE--EEEEEECCCCceEEEEecCCCCeEEecCCcccCCCcccceEE
Confidence 445554 688999752 34677776789984 5 47774 689999998654543 21 1
Q ss_pred EEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEE
Q 020048 148 LRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITV 209 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTI 209 (332)
+.+ .+++++.|||+|++..+. ..-|+.++-.++...+.+|.|.-..| |.+|+.-+....-+
T Consensus 355 ~~v-~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avf 433 (587)
T PLN02484 355 FAA-TGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVL 433 (587)
T ss_pred EEE-EcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCCCcEEEEecEEEeccceecccceeEE
Confidence 233 489999999999976532 22444444358889999999975443 34444445556677
Q ss_pred eCceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 210 SRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 210 S~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
++|.|.-.. ++.+--.+... .+...-..||+|.+...
T Consensus 434 q~C~i~~~~~~~~~~~~ITAq~r~~-~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 434 QNCSIYARKPMAQQKNTITAQNRKD-PNQNTGISIHACRILAA 475 (587)
T ss_pred eccEEEEecCCCCCceEEEecCCCC-CCCCcEEEEEeeEEecC
Confidence 888876321 12222111110 11123689999988654
No 63
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=96.10 E-value=0.25 Score=50.39 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=71.8
Q ss_pred ceEEecCCCCCC---ChhHHHhhhcC-----CCeEEEEeeceEEEecceeEec---cCcceeeecc---ceEEeCC----
Q 020048 85 PLYHVTTLADDG---PGSLREGCRMK-----EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQ---RVKLTGK---- 146 (332)
Q Consensus 85 ~v~~VTnl~dsG---~GSLr~Al~~~-----~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~---gitI~G~---- 146 (332)
..+.|-. +.+| --|+++||++. ..|++|+-..|+. ++.|.|. +++||.|.|. ..+|...
T Consensus 80 ~~~vV~~-a~dGsGdf~TIQaAIdAa~~~~~~~r~~I~Ik~GvY--~EkV~Ip~~kp~ItL~G~G~~~~~TvIt~~~~~~ 156 (422)
T PRK10531 80 PDFVVGP-AGTQGVTHTTVQAAVDAAIAKRTNKRQYIAVMPGTY--QGTVYVPAAAPPITLYGTGEKPIDVKIGLALDGE 156 (422)
T ss_pred CcEEEec-CCCCCCCccCHHHHHhhccccCCCceEEEEEeCcee--EEEEEeCCCCceEEEEecCCCCCceEEEecCccc
Confidence 5555632 2223 34789999852 2356666567988 4778883 6899999753 2344321
Q ss_pred -------------------------------------c------EEEeeeccEEEeeeEEeCCCCC-----CCCceEEcC
Q 020048 147 -------------------------------------G------LRLKECEHVIICNLEFEGGKGP-----DVDAIQIKP 178 (332)
Q Consensus 147 -------------------------------------g------i~i~~a~NVIIRnL~ir~g~~~-----~~DaI~i~~ 178 (332)
+ +.+ .+++++.+||+|+...+. ..-|+.++-
T Consensus 157 ~~~~~~~~~~~~~g~~~~~~p~~y~~d~~~~~~~~~~gT~~SATv~v-~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv 235 (422)
T PRK10531 157 MSPADWRANVNPRGKYMPGKPAWYMYDSCQSKRAATIGTLCSAVFWS-QNNGLQLQNLTIENTLGDSVDAGNHPAVALRT 235 (422)
T ss_pred cccccccccccccccccccccccccccccccccCCCcCceeeEEEEE-ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEE
Confidence 0 223 489999999999976431 123444443
Q ss_pred CCceEEEEceeeecCCCCceE
Q 020048 179 KSKHIWIDRCSLRDYDDGLID 199 (332)
Q Consensus 179 ~s~nVwIDHcs~s~~~Dg~id 199 (332)
.++.+.+.+|.|.-..|-++.
T Consensus 236 ~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 236 DGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred cCCcEEEEeeEEecccceeee
Confidence 578899999999877777664
No 64
>PLN02916 pectinesterase family protein
Probab=96.08 E-value=0.13 Score=53.59 Aligned_cols=146 Identities=16% Similarity=0.320 Sum_probs=89.2
Q ss_pred hhHHHhhhcC-------CCeEEEEeeceEEEecceeEec---cCcceeeeccceEEe--------CC------cEEEeee
Q 020048 98 GSLREGCRMK-------EPLWIVFEVSGTIHLRSHLSVS---SYKTIDGRGQRVKLT--------GK------GLRLKEC 153 (332)
Q Consensus 98 GSLr~Al~~~-------~Pr~IVF~VsGtI~L~~~l~V~---snkTI~G~G~gitI~--------G~------gi~i~~a 153 (332)
-++++||++- ..|+||+-..|+++ +.+.|. +|+||.|.|..-|+. |. .+.+ .+
T Consensus 200 ~TIq~AI~a~P~~~~~~~~r~vI~Ik~GvY~--E~V~I~~~k~~i~l~G~g~~~TiIt~~~~~~~g~~T~~SAT~~v-~~ 276 (502)
T PLN02916 200 RTINQALAALSRMGKSRTNRVIIYVKAGVYN--EKVEIDRHMKNVMFVGDGMDKTIITNNRNVPDGSTTYSSATFGV-SG 276 (502)
T ss_pred cCHHHHHHhcccccCCCCceEEEEEeCceee--EEEEecCCCceEEEEecCCCCcEEEeCCccCCCCcceeeEEEEE-EC
Confidence 4688898652 34677776789884 778884 588999997554443 11 1333 48
Q ss_pred ccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEEEeCceec
Q 020048 154 EHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDITVSRCHFS 215 (332)
Q Consensus 154 ~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVTIS~n~f~ 215 (332)
++++.|||+|++..+. ..-|+.++-.++...+.+|.|.-..| |.+|+.-+....-+++|.|.
T Consensus 277 ~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~Rqyy~~C~I~GtVDFIFG~a~avFq~C~I~ 356 (502)
T PLN02916 277 DGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSLRQFYRDCHIYGTIDFIFGDAAVVFQNCDIF 356 (502)
T ss_pred CCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCCCEEEEecEEecccceeccCceEEEecCEEE
Confidence 9999999999976432 22344443357889999999975444 44444445556677788775
Q ss_pred cCC-----ceeeecCCCCCCCCcceeEEEeceeecCC
Q 020048 216 SHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGT 247 (332)
Q Consensus 216 ~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~ 247 (332)
-.. .+.+--.+... .....-..|++|.+...
T Consensus 357 ~~~~~~~~~g~ITAq~r~~-~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 357 VRRPMDHQGNMITAQGRDD-PHENTGISIQHSRVRAS 392 (502)
T ss_pred EecCCCCCcceEEecCCCC-CCCCcEEEEEeeEEecC
Confidence 321 12222111100 11123578899988553
No 65
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=95.84 E-value=0.059 Score=49.29 Aligned_cols=127 Identities=17% Similarity=0.178 Sum_probs=76.5
Q ss_pred Ccceeee---------ccceEEeCCcEEEeeeccEEEeeeEEeCCCC----CCCCc-eEEcCCCceEEEEceeeecCCCC
Q 020048 131 YKTIDGR---------GQRVKLTGKGLRLKECEHVIICNLEFEGGKG----PDVDA-IQIKPKSKHIWIDRCSLRDYDDG 196 (332)
Q Consensus 131 nkTI~G~---------G~gitI~G~gi~i~~a~NVIIRnL~ir~g~~----~~~Da-I~i~~~s~nVwIDHcs~s~~~Dg 196 (332)
|++|.+. +.+..-.+..|.+.+++||+|.+.+|..+.. ...|+ |.+..++++|-|-+|-|......
T Consensus 52 Nl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~ 131 (200)
T PF00544_consen 52 NLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKT 131 (200)
T ss_dssp S-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-EEEEEEET
T ss_pred CCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEchhccccccc
Confidence 6777662 2333334567999999999999999998721 11344 67765788999999988754322
Q ss_pred ceE------eecCCccEEEeCceeccCCce-eeecCCCCCCCCcceeEEEeceeecCCCCcCCcccc-CeEEEEcceE
Q 020048 197 LID------ITRESTDITVSRCHFSSHDKT-MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRY-AKVHLYNNYT 266 (332)
Q Consensus 197 ~id------i~~~s~nVTIS~n~f~~h~k~-~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~-G~~hv~NN~~ 266 (332)
++. .......||+-.|+|.+..-- -++.. -.+-+-+|+|.+.....=.++. +++-+.||||
T Consensus 132 ~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~r~---------G~~Hv~NN~~~~~~~y~i~~~~~a~v~~E~N~F 200 (200)
T PF00544_consen 132 MLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRVRF---------GYVHVYNNYYYNWSGYAIGARSGAQVLVENNYF 200 (200)
T ss_dssp CEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEECS---------CEEEEES-EEEEECSESEEEETTEEEEEES-EE
T ss_pred cccCCCCCccccCCceEEEEeEEECchhhCCCcccc---------cEEEEEEeeeECCCCEEEEccCCeEEEEECcCC
Confidence 221 112236899999999753211 12211 2688899999877766655554 4788999987
No 66
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=95.67 E-value=0.29 Score=47.94 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=87.0
Q ss_pred EEEeeeccEEEeeeEEeCCCCC---CCCceEEcCCCceEEEEceeeecCC-----CCceEeecCCccEEEeCceeccCCc
Q 020048 148 LRLKECEHVIICNLEFEGGKGP---DVDAIQIKPKSKHIWIDRCSLRDYD-----DGLIDITRESTDITVSRCHFSSHDK 219 (332)
Q Consensus 148 i~i~~a~NVIIRnL~ir~g~~~---~~DaI~i~~~s~nVwIDHcs~s~~~-----Dg~idi~~~s~nVTIS~n~f~~h~k 219 (332)
+.|+.++|+- |.+.... -+-++.|+ .+.||+|...+|.... +..|.+..++.+|=|-+|.|..+..
T Consensus 95 ~~iki~sNkT-----ivG~g~~a~~~g~gl~i~-~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~ 168 (345)
T COG3866 95 ITIKIGSNKT-----IVGSGADATLVGGGLKIR-DAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSY 168 (345)
T ss_pred EEEeeccccE-----EEeeccccEEEeceEEEE-eCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccc
Confidence 5666555554 4433211 24567887 5899999999998654 3447887778899999999987655
Q ss_pred eeeecCCCCCC--CCcceeEEEeceeecCCCC---------cCCccccCeEEEEcceEEcCccceEEEccCceEEEEceE
Q 020048 220 TMLIGADPSHV--ADRCIRVTIHHCFFDGTRQ---------RHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNI 288 (332)
Q Consensus 220 ~~LiG~~d~~~--~d~~~~VT~hhNlf~~~~~---------R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v~~egNy 288 (332)
..---+.|... ......||+-.|.|+++.. .++.-..-++.+-+|+|.|.-..+=.++ -+++.+-+||
T Consensus 169 ~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriR-fG~vHvyNNY 247 (345)
T COG3866 169 NASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIR-FGMVHVYNNY 247 (345)
T ss_pred cccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceE-eeEEEEeccc
Confidence 42111112111 1123479999999976532 2222111247788999998643332222 3578889999
Q ss_pred EecCCc
Q 020048 289 YEAGQK 294 (332)
Q Consensus 289 f~~g~~ 294 (332)
|+.-++
T Consensus 248 y~~~~~ 253 (345)
T COG3866 248 YEGNPK 253 (345)
T ss_pred cccCcc
Confidence 995543
No 67
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=95.50 E-value=0.051 Score=48.42 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=23.3
Q ss_pred CcceeeeccceEEe--CCcEEEeeeccEEEeeeEEeCC
Q 020048 131 YKTIDGRGQRVKLT--GKGLRLKECEHVIICNLEFEGG 166 (332)
Q Consensus 131 nkTI~G~G~gitI~--G~gi~i~~a~NVIIRnL~ir~g 166 (332)
|++|.|.+.. .. ..++.+..+.++.|+|++++..
T Consensus 98 nl~i~~~~~~--~~~~~~~i~~~~~~~~~i~nv~~~~~ 133 (225)
T PF12708_consen 98 NLTIDGNGID--PNNNNNGIRFNSSQNVSISNVRIENS 133 (225)
T ss_dssp EEEEEETCGC--E-SCEEEEEETTEEEEEEEEEEEES-
T ss_pred eeEEEccccc--CCCCceEEEEEeCCeEEEEeEEEEcc
Confidence 4777776322 21 3457777789999999999975
No 68
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.37 Score=47.89 Aligned_cols=132 Identities=14% Similarity=0.098 Sum_probs=86.7
Q ss_pred eeEeccCcceeeeccceEEeC--CcEEEeeeccEEEeeeEEeCCCC----CCCCceEEcCCCceEEEEceeeecCCCCce
Q 020048 125 HLSVSSYKTIDGRGQRVKLTG--KGLRLKECEHVIICNLEFEGGKG----PDVDAIQIKPKSKHIWIDRCSLRDYDDGLI 198 (332)
Q Consensus 125 ~l~V~snkTI~G~G~gitI~G--~gi~i~~a~NVIIRnL~ir~g~~----~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~i 198 (332)
.|.+....|-++.- ...|.| .||.+.++.++.|+.-+|.+-.. ..++||.+. ++..+-|--+.++...|+..
T Consensus 99 gI~v~~~at~A~Vr-~N~l~~n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vy-Na~~a~V~~ndisy~rDgIy 176 (408)
T COG3420 99 GIFVGRTATGAVVR-HNDLIGNSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVY-NAPGALVVGNDISYGRDGIY 176 (408)
T ss_pred eEEeccCcccceEE-cccccccceEEEEeccCceEEEeeEEeeccccchhhccCceEEE-cCCCcEEEcCccccccceEE
Confidence 45566666666551 223444 35788899999999999987652 357999997 88899999999999999955
Q ss_pred EeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEE-eceeecCCCCcCCcccc-----CeEEEEcceEEcCccc
Q 020048 199 DITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTI-HHCFFDGTRQRHPRVRY-----AKVHLYNNYTRNWGIY 272 (332)
Q Consensus 199 di~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~-hhNlf~~~~~R~Pr~r~-----G~~hv~NN~~~n~~~~ 272 (332)
. ..+..-+++.|.|.+-.++.. .-| +.+.+.++.+|.-++.+ -.+.+.||.-.....+
T Consensus 177 -~-~~S~~~~~~gnr~~~~RygvH--------------yM~t~~s~i~dn~s~~N~vG~ALMys~~l~V~~nrS~Gnrd~ 240 (408)
T COG3420 177 -S-DTSQHNVFKGNRFRDLRYGVH--------------YMYTNDSRISDNSSRDNRVGYALMYSDRLKVSDNRSSGNRDH 240 (408)
T ss_pred -E-cccccceecccchhheeeeEE--------------EEeccCcEeecccccCCcceEEEEEeccEEEEcCcccCcccc
Confidence 3 347788889999987665532 222 33344555555555543 2345556655544444
Q ss_pred eE
Q 020048 273 AV 274 (332)
Q Consensus 273 ai 274 (332)
++
T Consensus 241 Gi 242 (408)
T COG3420 241 GI 242 (408)
T ss_pred ce
Confidence 44
No 69
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=93.34 E-value=0.36 Score=44.12 Aligned_cols=116 Identities=19% Similarity=0.156 Sum_probs=72.2
Q ss_pred ccEEEeCceeccCCc-e-eeecCCCCCCCCcceeEEEeceeecCCCCcCCccc--cC-------eEEEEcceEEcCccce
Q 020048 205 TDITVSRCHFSSHDK-T-MLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR--YA-------KVHLYNNYTRNWGIYA 273 (332)
Q Consensus 205 ~nVTIS~n~f~~h~k-~-~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r--~G-------~~hv~NN~~~n~~~~a 273 (332)
++|.|=+|.|.+-.- + -|+|...+...+...+|-+|||.|-.+. ++|... .| ..-+.||++......|
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tG-tn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aa 80 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTG-TNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAA 80 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCC-cCCCCceeeeEEeccccccEEEeeeecccccce
Confidence 578888888886543 3 3668765555566669999999997753 344443 23 2478999998875545
Q ss_pred EEE----------ccCceEEEEceEEecCCcee------eeeehhccccCceeEEeeeccccCC
Q 020048 274 VCA----------SVDSQIYSQCNIYEAGQKKM------AFKYLTEKVSVLSIFFFSIPFLNQS 321 (332)
Q Consensus 274 i~~----------~~~a~v~~egNyf~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (332)
+.- +.+-...+.+|++.+..+.. -+--...-.+.++..+.-|-++|.+
T Consensus 81 i~~~y~~~~~sp~gsgyttivRNNII~NT~~r~~~~~GtGYgv~N~L~~tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 81 IAQMYPDYDLSPKGSGYTTIVRNNIIVNTRKRKSSPAGTGYGVINYLPETHSFVLENNCLYNNA 144 (198)
T ss_pred EEEEecccccCCCCCceEEEEEcceEeeeeecccCCCCceeEEEecCCCcceEEEEccceeccC
Confidence 421 12336788899998875331 1222333445666666666555543
No 70
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=93.02 E-value=0.43 Score=50.15 Aligned_cols=134 Identities=21% Similarity=0.321 Sum_probs=83.6
Q ss_pred CCCeEEEEeeceEEEec------ce---eE-ec-cCcceeeeccceEEeC----CcEEEeeeccEEEeeeEEeCCCCCCC
Q 020048 107 KEPLWIVFEVSGTIHLR------SH---LS-VS-SYKTIDGRGQRVKLTG----KGLRLKECEHVIICNLEFEGGKGPDV 171 (332)
Q Consensus 107 ~~Pr~IVF~VsGtI~L~------~~---l~-V~-snkTI~G~G~gitI~G----~gi~i~~a~NVIIRnL~ir~g~~~~~ 171 (332)
..|+.|+|.--..+.+. ++ +. +. +|+||.+. .+...+ .||.+..|+||.|.+.||..+ .
T Consensus 236 ~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl--~I~~~~~~NtDG~d~~sc~NvlI~~~~fdtg----D 309 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNL--TIDANRFDNTDGFDPGSCSNVLIEGCRFDTG----D 309 (542)
T ss_pred cCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecce--EEECCCCCCCCccccccceeEEEeccEEecC----C
Confidence 46778777543333332 11 11 12 56666654 112223 378998999999999999975 3
Q ss_pred CceEEcC-----------CCceEEEEceeeecCCCCceEee---cCCccEEEeCceeccCCceeeecCCCCCCCCcceeE
Q 020048 172 DAIQIKP-----------KSKHIWIDRCSLRDYDDGLIDIT---RESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRV 237 (332)
Q Consensus 172 DaI~i~~-----------~s~nVwIDHcs~s~~~Dg~idi~---~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~V 237 (332)
|+|.++. -+++|||-||-|+.+.-+.+.-. .+..+|++.+|.|.+...+.=|....... -..-+|
T Consensus 310 D~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~g-G~v~nI 388 (542)
T COG5434 310 DCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRG-GGVRNI 388 (542)
T ss_pred ceEEeecccCCcccccccccccEEEecceecccccceEeeeecCCceeEEEEEeeeeccCcceeeeeeecccc-eeEEEE
Confidence 6666541 24789999999998776654322 34679999999999866655444332211 112367
Q ss_pred EEeceeecCC
Q 020048 238 TIHHCFFDGT 247 (332)
Q Consensus 238 T~hhNlf~~~ 247 (332)
+|+.+...+.
T Consensus 389 ~~~~~~~~nv 398 (542)
T COG5434 389 VFEDNKMRNV 398 (542)
T ss_pred EEecccccCc
Confidence 7777666554
No 71
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=92.03 E-value=0.49 Score=48.31 Aligned_cols=118 Identities=15% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCceEEcC-----CCceEEEEceeeec--CCCCceEeecCCccEEEeCceeccCCceeeecCCCCCCCCcceeEEEece
Q 020048 170 DVDAIQIKP-----KSKHIWIDRCSLRD--YDDGLIDITRESTDITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHC 242 (332)
Q Consensus 170 ~~DaI~i~~-----~s~nVwIDHcs~s~--~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhN 242 (332)
.+-+|+|-. ...+..|+++=|.. +.-|.|++| |..-||.+|.|.+..=+.-+=++. +-++..|
T Consensus 183 ggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE~EIISvK--S~~N~ir~Ntf~es~G~ltlRHGn--------~n~V~gN 252 (425)
T PF14592_consen 183 GGETIRIGTSHSSMSDSNTTVENNLFERCDGEVEIISVK--SSDNTIRNNTFRESQGSLTLRHGN--------RNTVEGN 252 (425)
T ss_dssp ---SEEE-SSTT-B-----EEES-EEEEE-SSSEEEEEE--SBT-EEES-EEES-SSEEEEEE-S--------S-EEES-
T ss_pred CceeEEEecccccccccceeeecchhhhcCCceeEEEee--cCCceEeccEEEeccceEEEecCC--------CceEecc
Confidence 445666631 12456666666664 456677775 567788888887644333222221 4688889
Q ss_pred eecCCCCc--CCcccc-CeEE-EEcceEEcCccce----EE---EccC---------ceEEEEceEEecCCceee
Q 020048 243 FFDGTRQR--HPRVRY-AKVH-LYNNYTRNWGIYA----VC---ASVD---------SQIYSQCNIYEAGQKKMA 297 (332)
Q Consensus 243 lf~~~~~R--~Pr~r~-G~~h-v~NN~~~n~~~~a----i~---~~~~---------a~v~~egNyf~~g~~~~~ 297 (332)
+|-.+..+ .+-+|. +.-| |+|||+++-.+.. +. ...+ ..+++++|.|.+-..++.
T Consensus 253 ~FiGng~~~~tGGIRIi~~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~~~~i~ 327 (425)
T PF14592_consen 253 VFIGNGVKEGTGGIRIIGEGHTIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINCKSPIH 327 (425)
T ss_dssp EEEE-SSSS-B--EEE-SBS-EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-SEEEE
T ss_pred EEecCCCcCCCCceEEecCCcEEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEccCCceE
Confidence 99776643 456664 5544 7899999864322 21 1001 148899999999875543
No 72
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=88.94 E-value=6.2 Score=39.32 Aligned_cols=146 Identities=12% Similarity=0.150 Sum_probs=91.0
Q ss_pred hhHHHhhhc-----CCCeEEEEeeceEEEecceeEec-cC--cceeeeccc--eEEe-----C---C--cE---------
Q 020048 98 GSLREGCRM-----KEPLWIVFEVSGTIHLRSHLSVS-SY--KTIDGRGQR--VKLT-----G---K--GL--------- 148 (332)
Q Consensus 98 GSLr~Al~~-----~~Pr~IVF~VsGtI~L~~~l~V~-sn--kTI~G~G~g--itI~-----G---~--gi--------- 148 (332)
-|.++||++ ...|.+++-..|++ ++.|.|. ++ +|+.|.+.. -+.. + . +.
T Consensus 95 ~TIQaAvdaA~~~~~~kr~yI~vk~GvY--~e~v~Vp~~~~~ITLyGed~~~~~tvIg~n~aagp~np~~~m~n~c~ss~ 172 (405)
T COG4677 95 TTIQAAVDAAIIKRTNKRQYIAVKAGVY--QETVYVPAAPGGITLYGEDEKPIDTVIGLNLAAGPGNPAGYMYNSCQSSR 172 (405)
T ss_pred HHHHHHHhhhcccCCCceEEEEEcccee--ceeEEecCCCCceeEEecCCCCcceEEEEecCCCCCCccceeecccccch
Confidence 567888875 23566777678988 4778885 45 899998543 1211 1 1 11
Q ss_pred -----------EEeeeccEEEeeeEEeCCCC--CCC---CceEEcCCCceEEEEceeeecCCCCceEeecCCc-------
Q 020048 149 -----------RLKECEHVIICNLEFEGGKG--PDV---DAIQIKPKSKHIWIDRCSLRDYDDGLIDITREST------- 205 (332)
Q Consensus 149 -----------~i~~a~NVIIRnL~ir~g~~--~~~---DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~------- 205 (332)
.+...++.+.|||+|+...+ .+. -++-+...++.+.+..|.+--..|-++.-..+..
T Consensus 173 ~~tigt~~Sat~~v~~ndf~~~nlT~en~~gd~~lagn~~AVaL~~dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~ 252 (405)
T COG4677 173 SATIGTLCSATFWVQNNDFQLQNLTIENTLGDGVLAGNHPAVALATDGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNR 252 (405)
T ss_pred hhhhhhhhhhhheeecCCcccccceeecccCCccccCCceeEEEEecCCceeeeeeeEeeccceEEecCCCCccccccCc
Confidence 01236788999999986432 222 3555655678899999999888887664433211
Q ss_pred --cEEEeCceeccCCceeeecCCCCCCCCcceeEEEeceeecCCCCcCCccc
Q 020048 206 --DITVSRCHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVR 255 (332)
Q Consensus 206 --nVTIS~n~f~~h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r 255 (332)
.--+.+|.|.. +--+++|+. .+-||+|-|.-+..|.|...
T Consensus 253 ~~R~yftNsyI~G-dvDfIfGsg---------taVFd~c~i~~~d~r~~~~g 294 (405)
T COG4677 253 QPRTYFTNSYIEG-DVDFIFGSG---------TAVFDNCEIQVVDSRTQQEG 294 (405)
T ss_pred chhhheecceecc-cceEEeccc---------eEEeccceEEEeccCCCcce
Confidence 12234666653 234566654 46778888888888876554
No 73
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=84.35 E-value=13 Score=36.03 Aligned_cols=97 Identities=19% Similarity=0.223 Sum_probs=48.6
Q ss_pred eeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecC--CCC---------ceEee---cCCccEEEeCceecc
Q 020048 151 KECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDY--DDG---------LIDIT---RESTDITVSRCHFSS 216 (332)
Q Consensus 151 ~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~--~Dg---------~idi~---~~s~nVTIS~n~f~~ 216 (332)
..+++|-|+|+.+. +|.+.| .++||-|||..+.-- -|+ .++.+ ..+.||||-.|.+.+
T Consensus 115 W~c~~i~l~nv~~~------gdYf~m--~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDAFWn~eNVtVyDS~i~G 186 (277)
T PF12541_consen 115 WNCRGIKLKNVQAN------GDYFFM--NSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDAFWNCENVTVYDSVING 186 (277)
T ss_pred EEeCCeEEEeEEEe------ceEeee--eccceEEeceEEeCCEEeeceeeEEEEccEEecccccccCCceEEEcceEee
Confidence 34555555555552 244444 366677777665311 011 11111 124566666666554
Q ss_pred CCceeeecCCCCCCCCcceeEEEeceeecCCCCcCCccccCeEEEEcceEEcC
Q 020048 217 HDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNW 269 (332)
Q Consensus 217 h~k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~ 269 (332)
-+.+ |-+ .++|+-+|.+... .|..-.-.+.+.|+-+.+.
T Consensus 187 EYLg--W~S---------kNltliNC~I~g~---QpLCY~~~L~l~nC~~~~t 225 (277)
T PF12541_consen 187 EYLG--WNS---------KNLTLINCTIEGT---QPLCYCDNLVLENCTMIDT 225 (277)
T ss_pred eEEE--EEc---------CCeEEEEeEEecc---CccEeecceEEeCcEeecc
Confidence 3322 111 2677777766443 4555445566777776654
No 74
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=80.50 E-value=15 Score=35.55 Aligned_cols=63 Identities=17% Similarity=0.364 Sum_probs=47.8
Q ss_pred eeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceeccCCceeeecCC
Q 020048 152 ECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSSHDKTMLIGAD 226 (332)
Q Consensus 152 ~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~h~k~~LiG~~ 226 (332)
+++|..|.|.+|..|.. + ++ .++||-+++|.|.|-.= +++ ++++.|.+|.|.+-..+.+|.+.
T Consensus 17 ~~~d~~l~~~~f~dGES----~--LK-es~nI~~~~~~F~~KYP----~Wh-~~~~~i~~~~f~~~aRa~iWYs~ 79 (277)
T PF12541_consen 17 GSHDLRLENCTFADGES----P--LK-ESRNIELKNCIFKWKYP----LWH-SDNIKIENCYFTEMARAAIWYSN 79 (277)
T ss_pred ccCCCEEEeeEEeCCCc----c--cc-cccceEEECCEEeeECc----eEE-ECCeEEEeeEEeecceeeeeEeC
Confidence 58899999999996642 2 23 67899999999987432 222 46888899999988888888775
No 75
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=75.10 E-value=26 Score=36.73 Aligned_cols=100 Identities=19% Similarity=0.381 Sum_probs=58.3
Q ss_pred cEEEeeeccEEEeeeEEeCCCCC-CCCceEEcCCCceEEEEceeeecCCC-----------------CceEeecCCccEE
Q 020048 147 GLRLKECEHVIICNLEFEGGKGP-DVDAIQIKPKSKHIWIDRCSLRDYDD-----------------GLIDITRESTDIT 208 (332)
Q Consensus 147 gi~i~~a~NVIIRnL~ir~g~~~-~~DaI~i~~~s~nVwIDHcs~s~~~D-----------------g~idi~~~s~nVT 208 (332)
.+.+ .+++++.|||+|++..+. ..-|+.++-.++.+.+.+|.|.-.-| |.+|+.-+....-
T Consensus 264 T~~v-~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~rqyy~~C~I~G~vDFIFG~a~av 342 (497)
T PLN02698 264 TFTI-TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAALRQFYRECDIYGTIDFIFGNAAAV 342 (497)
T ss_pred eEEE-ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCCcEEEEeeEEEeccceEeccccee
Confidence 4556 489999999999976532 12344444357889999999975433 3444444445566
Q ss_pred EeCceeccCC-----ceeeecCCCCCCCCcceeEEEeceeecCCC
Q 020048 209 VSRCHFSSHD-----KTMLIGADPSHVADRCIRVTIHHCFFDGTR 248 (332)
Q Consensus 209 IS~n~f~~h~-----k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~ 248 (332)
+++|.|.... ++.+.-.+... .+...-..||+|.+....
T Consensus 343 f~~C~i~~~~~~~~~~~~iTAq~r~~-~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 343 FQNCYLFLRRPHGKSYNVILANGRSD-PGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ecccEEEEecCCCCCceEEEecCCCC-CCCCceEEEEeeEEecCC
Confidence 7888775321 11121111100 111236888999886543
No 76
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=71.77 E-value=26 Score=32.81 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=25.9
Q ss_pred EEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceec
Q 020048 156 VIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (332)
Q Consensus 156 VIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~ 215 (332)
..|+|+.|-. ...|||... + .+.|+.+=+.+..+..+.++..+..++|..+-+.
T Consensus 63 atlkNvIiG~---~~~dGIHC~-G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~ 116 (215)
T PF03211_consen 63 ATLKNVIIGA---NQADGIHCK-G--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGAR 116 (215)
T ss_dssp EEEEEEEETS---S-TT-EEEE-S--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEE
T ss_pred CEEEEEEEcC---CCcCceEEc-C--CEEEEEEEecccceeeeEEcCCCceEEEeCCccc
Confidence 3445544422 134666665 2 4555555555555555666544435565555443
No 77
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=63.71 E-value=14 Score=24.94 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=19.3
Q ss_pred eEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceec
Q 020048 174 IQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFS 215 (332)
Q Consensus 174 I~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~ 215 (332)
|.+. .+.+..|..|.++...|| |.+. .+.+-+|..|.+.
T Consensus 2 I~l~-~s~~~~i~~N~i~~~~~G-I~~~-~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLE-SSSNNTLENNTASNNSYG-IYLT-DSSNNTLSNNTAS 40 (44)
T ss_pred EEEE-ecCCCEEECcEEeCCCCE-EEEE-eCCCCEeECCEEE
Confidence 4443 344444566666655554 4442 3445555555543
No 78
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=62.82 E-value=83 Score=29.07 Aligned_cols=92 Identities=14% Similarity=0.080 Sum_probs=54.5
Q ss_pred CCceEEEEceeeecC-CCCceEee-----cCCccEEEeCceeccCCceeeec-CCCC-CC-CCcceeEEEeceeecCCCC
Q 020048 179 KSKHIWIDRCSLRDY-DDGLIDIT-----RESTDITVSRCHFSSHDKTMLIG-ADPS-HV-ADRCIRVTIHHCFFDGTRQ 249 (332)
Q Consensus 179 ~s~nVwIDHcs~s~~-~Dg~idi~-----~~s~nVTIS~n~f~~h~k~~LiG-~~d~-~~-~d~~~~VT~hhNlf~~~~~ 249 (332)
.+++|+|.|+.|... ....++.. .+-.+..|.+|.|+..+.+.+.- ..+. .. ...+...++.+|.+.++..
T Consensus 32 ~a~nVhIhhN~fY~tGtn~~~~wvGGIv~sGF~ntlIENNVfDG~y~aai~~~y~~~~~sp~gsgyttivRNNII~NT~~ 111 (198)
T PF08480_consen 32 SAKNVHIHHNIFYDTGTNPNIDWVGGIVTSGFYNTLIENNVFDGVYHAAIAQMYPDYDLSPKGSGYTTIVRNNIIVNTRK 111 (198)
T ss_pred ccccEEEECcEeecCCcCCCCceeeeEEeccccccEEEeeeecccccceEEEEecccccCCCCCceEEEEEcceEeeeee
Confidence 467999999999763 23222221 23457899999999766654332 1111 11 1123567779999999997
Q ss_pred cCC-ccccC-----------eEEEEcceEEcCc
Q 020048 250 RHP-RVRYA-----------KVHLYNNYTRNWG 270 (332)
Q Consensus 250 R~P-r~r~G-----------~~hv~NN~~~n~~ 270 (332)
|.- ....| .+.+.||-+||..
T Consensus 112 r~~~~~GtGYgv~N~L~~tHsFvLenNclYnN~ 144 (198)
T PF08480_consen 112 RKSSPAGTGYGVINYLPETHSFVLENNCLYNNA 144 (198)
T ss_pred cccCCCCceeEEEecCCCcceEEEEccceeccC
Confidence 742 11212 3456677766653
No 79
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=46.75 E-value=57 Score=33.19 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=40.6
Q ss_pred ccEEEeCceeccCC--ceeeecCCCCCCCCcceeEEEeceeecCCCCcCCccccCeEEEEcceEEcCccceEEEccCceE
Q 020048 205 TDITVSRCHFSSHD--KTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQI 282 (332)
Q Consensus 205 ~nVTIS~n~f~~h~--k~~LiG~~d~~~~d~~~~VT~hhNlf~~~~~R~Pr~r~G~~hv~NN~~~n~~~~ai~~~~~a~v 282 (332)
..||+.++.|...+ .+.++=.. .++++|.+.|-+...=.=+.+ +...+....|+.... |+.....+++
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~~--------t~~~~hgC~F~gf~g~cl~~~-~~~~VrGC~F~~C~~-gi~~~~~~~l 190 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHAN--------TNTLFHGCSFFGFHGTCLESW-AGGEVRGCTFYGCWK-GIVSRGKSKL 190 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEec--------ceEEEEeeEEecCcceeEEEc-CCcEEeeeEEEEEEE-EeecCCcceE
Confidence 46777777776433 22222111 267777777766554333333 455566666555332 4444444555
Q ss_pred EEEceEEec
Q 020048 283 YSQCNIYEA 291 (332)
Q Consensus 283 ~~egNyf~~ 291 (332)
.+-.++|+.
T Consensus 191 sVk~C~Fek 199 (386)
T PF01696_consen 191 SVKKCVFEK 199 (386)
T ss_pred Eeeheeeeh
Confidence 555666654
No 80
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=42.40 E-value=61 Score=21.73 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=28.4
Q ss_pred cEEEeeeccEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeec
Q 020048 147 GLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRD 192 (332)
Q Consensus 147 gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~ 192 (332)
||.+..+++..|++=+|... .|||.+. .+++..|..+.++.
T Consensus 1 GI~l~~s~~~~i~~N~i~~~----~~GI~~~-~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNN----SYGIYLT-DSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeCC----CCEEEEE-eCCCCEeECCEEEc
Confidence 46777777777777777753 3689887 56666667766654
No 81
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=42.09 E-value=2.1e+02 Score=27.35 Aligned_cols=87 Identities=17% Similarity=0.267 Sum_probs=54.0
Q ss_pred ccCcceeeeccceE----EeCCcEEEeeeccEEEeeeEEeCCCCCCCCceEEc-----CCCceEEEEceeeecCCCCceE
Q 020048 129 SSYKTIDGRGQRVK----LTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIK-----PKSKHIWIDRCSLRDYDDGLID 199 (332)
Q Consensus 129 ~snkTI~G~G~git----I~G~gi~i~~a~NVIIRnL~ir~g~~~~~DaI~i~-----~~s~nVwIDHcs~s~~~Dg~id 199 (332)
.++.+|.|. .++ ..|.+|.|. +.+..|+|-+|.+.. .+||.+. +...++.|.-+++.....| ++
T Consensus 96 ~~~~~i~Gv--tItN~n~~~g~Gi~Ie-ss~~tI~Nntf~~~~---~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~G-i~ 168 (246)
T PF07602_consen 96 ANNATISGV--TITNPNIARGTGIWIE-SSSPTIANNTFTNNG---REGIFVTGTSANPGINGNVISGNSIYFNKTG-IS 168 (246)
T ss_pred cCCCEEEEE--EEEcCCCCcceEEEEe-cCCcEEEeeEEECCc---cccEEEEeeecCCcccceEeecceEEecCcC-eE
Confidence 455666664 221 134578886 449999999999853 3556543 2344566777777766666 44
Q ss_pred eecC--CccEEEeCceeccCCceee
Q 020048 200 ITRE--STDITVSRCHFSSHDKTML 222 (332)
Q Consensus 200 i~~~--s~nVTIS~n~f~~h~k~~L 222 (332)
+... +...+|.+|+|.+...++.
T Consensus 169 i~~~~~~~~n~I~NN~I~~N~~Gi~ 193 (246)
T PF07602_consen 169 ISDNAAPVENKIENNIIENNNIGIV 193 (246)
T ss_pred EEcccCCccceeeccEEEeCCcCeE
Confidence 4322 2235889999997666643
No 82
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=40.55 E-value=27 Score=38.63 Aligned_cols=9 Identities=22% Similarity=0.412 Sum_probs=4.6
Q ss_pred ccccccccc
Q 020048 51 STMSLPYAH 59 (332)
Q Consensus 51 ~~~~~~~~~ 59 (332)
|+.++|+..
T Consensus 606 maPvlP~gL 614 (1102)
T KOG1924|consen 606 MAPVLPFGL 614 (1102)
T ss_pred ccccCCCCC
Confidence 444555554
No 83
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=29.19 E-value=36 Score=39.39 Aligned_cols=20 Identities=35% Similarity=0.323 Sum_probs=8.9
Q ss_pred ceEEecCCCCC-CChhHHHhh
Q 020048 85 PLYHVTTLADD-GPGSLREGC 104 (332)
Q Consensus 85 ~v~~VTnl~ds-G~GSLr~Al 104 (332)
+.-+|-++... -|--||.-.
T Consensus 73 k~~~v~t~ka~~PpeHLrki~ 93 (2365)
T COG5178 73 KTLHVLTLKAPIPPEHLRKIQ 93 (2365)
T ss_pred hheeeeccCCCCCHHHHHhhh
Confidence 44455554332 334455444
No 84
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=28.24 E-value=87 Score=17.44 Aligned_cols=14 Identities=14% Similarity=0.382 Sum_probs=6.9
Q ss_pred eEEEEceeeecCCC
Q 020048 182 HIWIDRCSLRDYDD 195 (332)
Q Consensus 182 nVwIDHcs~s~~~D 195 (332)
+++|.+|.|+....
T Consensus 3 ~~~i~~n~i~~~~~ 16 (26)
T smart00710 3 NVTIENNTIRNNGG 16 (26)
T ss_pred CEEEECCEEEeCCC
Confidence 34555555554444
No 85
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=22.19 E-value=4.4e+02 Score=28.31 Aligned_cols=64 Identities=22% Similarity=0.254 Sum_probs=33.7
Q ss_pred cEEEeeec----cEEEeeeEEeCCCCCCCCceEEcCCCceEEEEceeeecCCCCceEeecCCccEEEeCceecc
Q 020048 147 GLRLKECE----HVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSRCHFSS 216 (332)
Q Consensus 147 gi~i~~a~----NVIIRnL~ir~g~~~~~DaI~i~~~s~nVwIDHcs~s~~~Dg~idi~~~s~nVTIS~n~f~~ 216 (332)
.+.+.+.+ +..|+|++.-+.+-...|||.+. . +-.|++|-+.-..|. |-+. -.+++|++|-+-.
T Consensus 345 Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly-~--nS~i~dcF~h~nDD~-iKlY--hS~v~v~~~ViWk 412 (582)
T PF03718_consen 345 SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELY-P--NSTIRDCFIHVNDDA-IKLY--HSNVSVSNTVIWK 412 (582)
T ss_dssp SEEEESSSGGGEEEEEEEEEEE---CTT----B---T--T-EEEEEEEEESS-S-EE----STTEEEEEEEEEE
T ss_pred eEEecCCccccccceeeceeeeeeEEeccCCcccc-C--CCeeeeeEEEecCch-hhee--ecCcceeeeEEEe
Confidence 45665444 36888998888887788999886 2 234467766655665 4443 2688888887764
No 86
>PRK03174 sspH acid-soluble spore protein H; Provisional
Probab=20.10 E-value=80 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=12.1
Q ss_pred ceEEcCCCceEEEEcee
Q 020048 173 AIQIKPKSKHIWIDRCS 189 (332)
Q Consensus 173 aI~i~~~s~nVwIDHcs 189 (332)
-|.+.-.+..|||+||.
T Consensus 15 ~i~VtY~G~pV~Ie~vd 31 (59)
T PRK03174 15 MANVTYNGVPIYIQHVD 31 (59)
T ss_pred ceEEEECCEEEEEEEEc
Confidence 34443367889999997
Done!