Citrus Sinensis ID: 020049

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEcccccHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEEEEccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meensclrQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYdvvntpgvtadishmdtgavvrgflgqpqlenaltgmdlviipagvprkpgmtrddlfnINAGIVRTLCEGIakccpnatvnlisnpvnstvPIAAEVFkkagtydpkkllGVTMLDVVRANTFVAEVlgldprdvdvpvvgghagvtilpllsqvkppcsftqEETEYLTNRIQNGGTEVVeakagagsaTLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEeifqlgplneyerIGLEKAKKELAGSIQkgisfskk
Flexible Loop (DISEMBL)
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpVVGGHAGVTilpllsqvkpPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEifqlgplneYERIGLEKAKKElagsiqkgisfskk
Low Complexity Region (SEG)
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpvvggHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Disordered region (IsUnstruct)
**********KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL********************
Disordered Region (DISOPRED)
**********************VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Disordered Region (DISEMBL)
*****************AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Disordered Region (DISPRO)
*****************AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.996	0.929	0.906	1e-176
P46488	356	Malate dehydrogenase, gly	N/A	no	0.996	0.929	0.903	1e-174
Q42972	356	Malate dehydrogenase, gly	yes	no	1.0	0.932	0.888	1e-171
P37228	353	Malate dehydrogenase, gly	yes	no	0.996	0.937	0.861	1e-168
O82399	354	Probable malate dehydroge	yes	no	1.0	0.937	0.855	1e-166
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.993	0.932	0.866	1e-161
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.993	0.921	0.863	1e-160
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.993	0.921	0.866	1e-160
P17783	347	Malate dehydrogenase, mit	N/A	no	0.930	0.890	0.676	1e-117
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	1.0	0.973	0.626	1e-117

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  616 bits (1588), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/331 (90%), Positives = 315/331 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  612 bits (1578), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/331 (90%), Positives = 315/331 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+SQVTELPFFA+KVRLGR G +E++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  602 bits (1552), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 295/332 (88%), Positives = 310/332 (93%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  LR + CRAKG A GFKVAILGA+GGIGQPLA+LMK+NPLVSVLHLYDVVNTPGV
Sbjct: 25  MEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHM+TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCPNA VN+ISNPVNSTVPIAAEVFKKAGTYDPK+LLGVT LDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPV+GGHAGVTILPLLSQV PPCSFT EE  YLT RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAA KFADACLRGLRGDAG+VEC+FVASQVTELPFFASKVRLGR G EEI  
Sbjct: 265 GSATLSMAYAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           LGPLNE+ER GLEKAKKELA SIQKG++F  K
Sbjct: 325 LGPLNEFERAGLEKAKKELAESIQKGVAFINK 356

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  590 bits (1521), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 285/331 (86%), Positives = 309/331 (93%)

Query: 2   EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 61
           E++ CL+++ CRAKGG +GFKVAILGAAGGIGQPLAMLMK+NPLVS+LHLYDVVNTPGVT
Sbjct: 23  EDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVT 82

Query: 62  ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121
           +DISHMDTGAVVRGFLGQ QLE+AL GMDLVIIPAGVPRKPGMTRDDLFNINAGIV+TLC
Sbjct: 83  SDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 142

Query: 122 EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181
           E IAKCCP A VN+ISNPVNSTVPIAAEVFK+AGTYDPK+LLGVTMLDVVRANTFVAEVL
Sbjct: 143 EAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVAEVL 202

Query: 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
           G+DPRDVDVPVVGGHAG+TILPLLSQ+KPPCSFT +E EYLT RIQNGG EVVEAKAGAG
Sbjct: 203 GVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTPKEIEYLTGRIQNGGPEVVEAKAGAG 262

Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
           SATLSMAYAAVKFADACL  LRGDAG++ECA+VASQVTELPFFASKVRLGR G EEI  L
Sbjct: 263 SATLSMAYAAVKFADACLHALRGDAGIIECAYVASQVTELPFFASKVRLGRVGVEEILPL 322

Query: 302 GPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           GPLN+YER  LEKAKKELA SI+KGISF +K
Sbjct: 323 GPLNDYERESLEKAKKELAASIEKGISFIRK 353

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  584 bits (1506), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 284/332 (85%), Positives = 308/332 (92%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           + + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDV N PGV
Sbjct: 23  IADGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGV 82

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 83  TADISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 142

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
            E IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DPKKL+GVTMLDVVRANTFVAEV
Sbjct: 143 SEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEV 202

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           + LDPR+V+VPVVGGHAGVTILPLLSQVKPPCSFTQ+E EYLT+RIQNGGTEVVEAKAGA
Sbjct: 203 MSLDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGA 262

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAV+FADACLRGLRGDA +VECA+VAS VTELPFFASKVRLGR G +E++ 
Sbjct: 263 GSATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYG 322

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           LGPLNEYER+GLEKAKKEL+ SI KG++F+KK
Sbjct: 323 LGPLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  566 bits (1459), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 286/330 (86%), Positives = 306/330 (92%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTA
Sbjct: 25  KNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTA 84

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           D+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+PRKPGMTRDDLF INAGIV+TLCE
Sbjct: 85  DVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCE 144

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
           G+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT LDV RANTFVAEVLG
Sbjct: 145 GVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLG 204

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT +E EYLTNRIQNGGTEVVEAKAGAGS
Sbjct: 205 LDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGS 264

Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLG 302
           ATLSMAYAA KFADACLRGLRGDA VVEC+FVASQVTEL FFA+KVRLGR GAEE++QLG
Sbjct: 265 ATLSMAYAAAKFADACLRGLRGDANVVECSFVASQVTELAFFATKVRLGRTGAEEVYQLG 324

Query: 303 PLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           PLNEYERIGLEKAK ELAGSIQKG+ F +K
Sbjct: 325 PLNEYERIGLEKAKDELAGSIQKGVEFIRK 354

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 285/330 (86%), Positives = 305/330 (92%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTA
Sbjct: 29  KNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTA 88

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           D+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAGVPRKPGMTRDDLF INAGIV+TLCE
Sbjct: 89  DVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCE 148

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
           G+AKCCPNA VNLISNPVNSTV IAAEVFKKAGTYDPKKLLGVT LDV RANTFVAEVLG
Sbjct: 149 GVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLG 208

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT  E EYLTNRIQNGGTEVVEAKAGAGS
Sbjct: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGS 268

Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLG 302
           ATLSMAYAA KFADACLRGLRGDA V+EC+FVASQVTEL FFA+KVRLGR GAEE+FQLG
Sbjct: 269 ATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLG 328

Query: 303 PLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           PLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct: 329 PLNEYERVGLEKAKEELAGSIQKGVDFIRK 358

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  563 bits (1452), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/330 (86%), Positives = 304/330 (92%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           +NS +    CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTA
Sbjct: 29  KNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTA 88

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           D+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAGVPRKPGMTRDDLF INAGIVRTLCE
Sbjct: 89  DVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCE 148

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
           G+AKCCPNA VNLISNPVNSTV IAAEVFKKAGTYDPKKLLGVT LDV RANTFVAEVLG
Sbjct: 149 GVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLG 208

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT  E EYLTNRIQNGGTEVVEAKAGAGS
Sbjct: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGS 268

Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLG 302
           ATLSMAYAA KFADACLRGLRGDA V+EC+FVASQVTEL FFA+KVRLGR GAEE+FQLG
Sbjct: 269 ATLSMAYAAAKFADACLRGLRGDANVIECSFVASQVTELAFFATKVRLGRTGAEEVFQLG 328

Query: 303 PLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           PLNEYER+GLEKAK+ELAGSIQKG+ F +K
Sbjct: 329 PLNEYERVGLEKAKEELAGSIQKGVDFIRK 358

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  423 bits (1087), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/309 (67%), Positives = 245/309 (79%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G+ Q
Sbjct: 36  KVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQ 95

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++LC  IAK CPNA +N+ISNPVN
Sbjct: 96  LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVN 155

Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
           STVPIAAEVFKKAGTYD KKL GVT LDVVRA TF A    +   +V+VPV+GGHAG+TI
Sbjct: 156 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITI 215

Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
           LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct: 216 LPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 275

Query: 262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
           L G   VVEC+FV S VTELPFFASKV+LG+ G E +  LGPL+++E+ GLEK K EL  
Sbjct: 276 LNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGLEKLKPELKA 335

Query: 322 SIQKGISFS 330
           SI+KGI F+
Sbjct: 336 SIEKGIQFA 344

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  421 bits (1082), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/335 (62%), Positives = 252/335 (75%), Gaps = 3/335 (0%)

Query: 1   MEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57
           +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NT
Sbjct: 7   VRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANT 66

Query: 58  PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIV 117
           PGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV
Sbjct: 67  PGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIV 126

Query: 118 RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 177
           + LC  IAK CP+A +N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA TF 
Sbjct: 127 KNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFY 186

Query: 178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
           A    +   +V+VPV+GGHAGVTILPL SQ  P  + + +    LT R Q+GGTEVVEAK
Sbjct: 187 AGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAK 246

Query: 238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEE 297
           AG GSATLSMAYA   FADACL+GL G   V+EC++V S +TELPFFASKVRLG+ G EE
Sbjct: 247 AGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEE 306

Query: 298 IFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           +  LGPL+++E+ GLE  K EL  SI+KG+ F+ +
Sbjct: 307 VLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	1.0	0.932	0.933	1e-179
255562058	356	malate dehydrogenase, putative [Ricinus	1.0	0.932	0.915	1e-176
60593475	362	Chain A, Mature And Translocatable Forms	0.996	0.914	0.906	1e-174
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.996	0.929	0.906	1e-174
118489009	354	unknown [Populus trichocarpa x Populus d	1.0	0.937	0.903	1e-174
224103817	354	predicted protein [Populus trichocarpa]	1.0	0.937	0.900	1e-174
158712040	354	malate dehydrogenase [Perilla frutescens	0.996	0.935	0.906	1e-173
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.996	0.929	0.903	1e-173
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.996	0.929	0.903	1e-172
224056321	356	predicted protein [Populus trichocarpa]	0.996	0.929	0.900	1e-171

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  634 bits (1634), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 310/332 (93%), Positives = 322/332 (96%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGH+GVTILPLLSQVKPPCSFT EET+YLTNRIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTPEETQYLTNRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGVVEC FVASQVTELPFFA+KVRLGR GAEEI+Q
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECTFVASQVTELPFFATKVRLGRSGAEEIYQ 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           LGPLNEYER+GLEKAKKELAGSI KGISF +K
Sbjct: 325 LGPLNEYERVGLEKAKKELAGSIAKGISFIRK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 304/332 (91%), Positives = 319/332 (96%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           ME +S L++A CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEGSSALKRADCRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLENALTGMDLV+IPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT EETEYLT RIQ+GGTEVV+AKAGA
Sbjct: 205 LGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTSEETEYLTKRIQDGGTEVVQAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAG+VEC+FVASQVTELPFFA+KVRLGR GAEE++Q
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGIVECSFVASQVTELPFFATKVRLGRNGAEEVYQ 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           LGPLNEYERIGLEKAKKEL  SIQKGISF KK
Sbjct: 325 LGPLNEYERIGLEKAKKELEASIQKGISFIKK 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/331 (90%), Positives = 315/331 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/331 (90%), Positives = 315/331 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  615 bits (1586), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/332 (90%), Positives = 317/332 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  L++  CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 23  MEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 82

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF INAGIVRTL
Sbjct: 83  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTL 142

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 143 CEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 202

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EETEYLT RIQ+GGTEVV+AKAGA
Sbjct: 203 LGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEETEYLTKRIQDGGTEVVQAKAGA 262

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS+VTELPFFA+KVRLGR+GAEE++Q
Sbjct: 263 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASEVTELPFFATKVRLGRRGAEEVYQ 322

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           LGPLNEYER+GL+KAKKELA SIQKG SF +K
Sbjct: 323 LGPLNEYERVGLQKAKKELAESIQKGTSFIRK 354

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  615 bits (1586), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 299/332 (90%), Positives = 318/332 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  L++  CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 23  MEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 82

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVPRKPGMTRDDLF INAGIVRTL
Sbjct: 83  TADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTL 142

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 143 CEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 202

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EETEYLT RIQ+GGTEVV+AKAGA
Sbjct: 203 LGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEETEYLTKRIQDGGTEVVQAKAGA 262

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGVVECAF+AS+VTELPFFA+KVRLGR+GAEE++Q
Sbjct: 263 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFIASEVTELPFFATKVRLGRRGAEEVYQ 322

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           LGPLNEYER+GL+KAKKELA SIQKGISF +K
Sbjct: 323 LGPLNEYERVGLQKAKKELAESIQKGISFIRK 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158712040|gb|ABW79813.1| malate dehydrogenase [Perilla frutescens]

 Score =  612 bits (1579), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/331 (90%), Positives = 315/331 (95%)

Query: 2   EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 61
           E +  LR A CRAKGGA GFKVAILGAAGGIGQPL+MLMK+NPLVSVLHLYDVVN PGVT
Sbjct: 24  EHHPILRAADCRAKGGAPGFKVAILGAAGGIGQPLSMLMKMNPLVSVLHLYDVVNAPGVT 83

Query: 62  ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121
           AD+SHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC
Sbjct: 84  ADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 143

Query: 122 EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181
           EGIAK CPNA VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL
Sbjct: 144 EGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 203

Query: 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
           GLDPR+V VPVVGGHAGVTILPLLSQVKPPCSFT EETEYLT RIQ+GGTEVV+AKAGAG
Sbjct: 204 GLDPREVSVPVVGGHAGVTILPLLSQVKPPCSFTPEETEYLTKRIQDGGTEVVQAKAGAG 263

Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
           SATLSMAYAAVKFAD CLRGL+GDAG+VECAFVASQVT+LPFFA+KVRLGR GAEE+FQL
Sbjct: 264 SATLSMAYAAVKFADLCLRGLKGDAGIVECAFVASQVTDLPFFATKVRLGRGGAEEVFQL 323

Query: 302 GPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           GPLNEYER+GLEKAKKELA SIQKG+SF KK
Sbjct: 324 GPLNEYERVGLEKAKKELAVSIQKGVSFIKK 354

Source: Perilla frutescens

Species: Perilla frutescens

Genus: Perilla

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  612 bits (1578), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 299/331 (90%), Positives = 315/331 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+SQVTELPFFA+KVRLGR G +E++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 299/331 (90%), Positives = 315/331 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGVVECAFV+SQVTELPFFA+KVRLGR G +E++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNGIDEVYS 324

Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056321|ref|XP_002298801.1| predicted protein [Populus trichocarpa] gi|222846059|gb|EEE83606.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 298/331 (90%), Positives = 316/331 (95%)

Query: 2   EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 61
           EE+  L++A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NP VSVLHLYDVVNTPGVT
Sbjct: 26  EESCVLKRADCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPSVSVLHLYDVVNTPGVT 85

Query: 62  ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121
           ADI HMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIV TLC
Sbjct: 86  ADIGHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVITLC 145

Query: 122 EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181
           EGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVL
Sbjct: 146 EGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVL 205

Query: 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
           GL P++VDVPVVGGHAGVTILPLLSQVKPP SFT EETEYLT RIQ+GGTEVV+AKAGAG
Sbjct: 206 GLHPKEVDVPVVGGHAGVTILPLLSQVKPPSSFTPEETEYLTKRIQDGGTEVVQAKAGAG 265

Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
           SATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS+VTELPFFA+KVRLGR+GAEE++QL
Sbjct: 266 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASEVTELPFFATKVRLGRRGAEEVYQL 325

Query: 302 GPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           GPLNEYER+GL +AKKELA SIQKG+SF +K
Sbjct: 326 GPLNEYERVGLGRAKKELAESIQKGVSFIRK 356

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.993	0.932	0.824	3.4e-141
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.837	0.765	0.820	7.9e-117
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	1.0	0.973	0.608	2e-102
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.936	0.912	0.646	8.8e-102
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.945	0.779	0.604	4.1e-97
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.948	0.937	0.555	1.8e-87
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.963	0.949	0.540	2e-86
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.933	0.917	0.548	2.4e-85
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.933	0.917	0.548	2.4e-85
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.978	0.953	0.541	4.9e-85

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1381 (491.2 bits), Expect = 3.4e-141, P = 3.4e-141
 Identities = 272/330 (82%), Positives = 292/330 (88%)

Query:     3 ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
             + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDV N PGVTA
Sbjct:    25 DGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTA 84

Query:    63 DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
             DISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL E
Sbjct:    85 DISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSE 144

Query:   123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXX 182
              IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DPKKL+GVTMLDVVRANTFVAE   
Sbjct:   145 AIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMS 204

Query:   183 XXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
                          HAGVTILPLLSQVKPPCSFTQ+E EYLT+RIQNGGTEVVEAKAGAGS
Sbjct:   205 LDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGS 264

Query:   243 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLG 302
             ATLSMAYAAV+FADACLRGLRGDA +VECA+VAS VTELPFFASKVRLGR G +E++ LG
Sbjct:   265 ATLSMAYAAVEFADACLRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLG 324

Query:   303 PLNEYERIGLEKAKKELAGSIQKGISFSKK 332
             PLNEYER+GLEKAKKEL+ SI KG++F+KK
Sbjct:   325 PLNEYERMGLEKAKKELSVSIHKGVTFAKK 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1151 (410.2 bits), Expect = 7.9e-117, P = 7.9e-117
 Identities = 229/279 (82%), Positives = 243/279 (87%)

Query:     1 ME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 59
             ME +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PG
Sbjct:    22 MEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPG 81

Query:    60 VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 119
             VTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+PRKPGMTRDDLF INAGIV+T
Sbjct:    82 VTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKT 141

Query:   120 LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
             LCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT LDV RANTFVAE
Sbjct:   142 LCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAE 201

Query:   180 XXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
                             HAGVTILPLLSQVKPP SFT +E EYLTNRIQNGGTEVVEAKAG
Sbjct:   202 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAG 261

Query:   240 AGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV 278
             AGSATLSMAYAA KFADACLRGLRGDA VVEC+FVASQV
Sbjct:   262 AGSATLSMAYAAAKFADACLRGLRGDANVVECSFVASQV 300

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 204/335 (60%), Positives = 242/335 (72%)

Query:     1 MEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57
             +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NT
Sbjct:     7 VRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANT 66

Query:    58 PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIV 117
             PGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV
Sbjct:    67 PGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIV 126

Query:   118 RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 177
             + LC  IAK CP+A +N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA TF 
Sbjct:   127 KNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFY 186

Query:   178 AEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
             A                 HAGVTILPL SQ  P  + + +    LT R Q+GGTEVVEAK
Sbjct:   187 AGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAK 246

Query:   238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEE 297
             AG GSATLSMAYA   FADACL+GL G   V+EC++V S +TELPFFASKVRLG+ G EE
Sbjct:   247 AGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKNGVEE 306

Query:   298 IFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
             +  LGPL+++E+ GLE  K EL  SI+KG+ F+ +
Sbjct:   307 VLDLGPLSDFEKEGLEALKPELKSSIEKGVKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 201/311 (64%), Positives = 231/311 (74%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   
Sbjct:    31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDD 90

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP A VN+ISNPVN
Sbjct:    91 LGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVN 150

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             STVPIAAE+FKKAGTYD KKL GVT LDVVRA TF A                 HAG+TI
Sbjct:   151 STVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITI 210

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
             LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSMAYA   FADACL+G
Sbjct:   211 LPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSMAYAGALFADACLKG 270

Query:   262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
             L G   VVEC+FV S +TELPFFASKVRLG+ G EE+  LGPL+++E+ GLE  K EL  
Sbjct:   271 LNGVPNVVECSFVQSTITELPFFASKVRLGKNGVEEVLDLGPLSDFEKEGLEALKAELKS 330

Query:   322 SIQKGISFSKK 332
             SI+KGI F+ +
Sbjct:   331 SIEKGIKFANQ 341

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 191/316 (60%), Positives = 237/316 (75%)

Query:    19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 78
             A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct:    81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query:    79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
               +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct:   141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query:   139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
             PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++                HAG
Sbjct:   201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query:   199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 258
             +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSMAYAA +F ++ 
Sbjct:   261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSMAYAAARFVESS 320

Query:   259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ--LGPLNEYERIGLEKAK 316
             LR L GD  V EC+FV S +T+LPFFAS+V++G+ G E + +  L  L EYE+  LE  K
Sbjct:   321 LRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNGLEAVIESDLQGLTEYEQKALEALK 380

Query:   317 KELAGSIQKGISFSKK 332
              EL  SI KG++F+ K
Sbjct:   381 VELKASIDKGVAFANK 396

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
 Identities = 175/315 (55%), Positives = 223/315 (70%)

Query:    16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG 75
             G    +KV + GAAGGIGQPL++L+K NPLV+ L LYD+V+TPGV AD+SH+DT +   G
Sbjct:    20 GQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIVHTPGVAADLSHIDTKSKTAG 79

Query:    76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             F+G  QL ++L G D+V+IPAGVPRKPGMTRDDLFN+NAGI++ +   IAK CP A V +
Sbjct:    80 FIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAGIIKDISNSIAKNCPKALVAI 139

Query:   136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
             I+NPVN+ VPIAAE+ KKAG YDPK+L GV+ LDVVRA  F+                  
Sbjct:   140 ITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARAFIGHALGVDPQTVQIPVIGG 199

Query:   196 HAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA 255
             H+GVTILP+LSQ +P     Q+  E LT RIQ  GTEVV+AKAGAGSATLSMAYA  +FA
Sbjct:   200 HSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVKAKAGAGSATLSMAYAGARFA 259

Query:   256 DACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 315
              + L+GL G+  V+EC++V S VTE  FF++ + LG+ G +E   L  LN+YE+  LE A
Sbjct:   260 GSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGVQENLGLPKLNDYEKKLLEAA 319

Query:   316 KKELAGSIQKGISFS 330
               EL  +IQKGI F+
Sbjct:   320 IPELKKNIQKGIDFA 334

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 174/322 (54%), Positives = 222/322 (68%)

Query:    12 CRAKGGAA--GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 69
             CR    +A    KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    70 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
              A V+GFLG  QL   L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   130 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXX 189
              A + +ISNPVNST+PI +EVFKK G Y+P ++ GVT LD+VRANTFVAE          
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   190 XXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY 249
                   HAG TI+PL+SQ  P   F Q++ E LT RIQ  GTEVV+AKAGAGSATLSMAY
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSMAY 252

Query:   250 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYER 309
             A  +F  + +  + G  GV+EC+FV S+ TE P+F++ + LG+ G E+   +G +  +E 
Sbjct:   253 AGARFVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLLGKNGIEKNLGIGKITPFEE 312

Query:   310 IGLEKAKKELAGSIQKGISFSK 331
               + +A  EL  SI+KG  F+K
Sbjct:   313 KMVAEAMAELKASIKKGEDFAK 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 170/310 (54%), Positives = 219/310 (70%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
             + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct:   266 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 325

Query:   322 SIQKGISFSK 331
             SI+KG  F K
Sbjct:   326 SIKKGEEFVK 335

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
 Identities = 170/310 (54%), Positives = 219/310 (70%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 265

Query:   262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
             + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct:   266 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 325

Query:   322 SIQKGISFSK 331
             SI+KG  F K
Sbjct:   326 SIKKGEEFVK 335

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 178/329 (54%), Positives = 228/329 (69%)

Query:     4 NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD 63
             NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD
Sbjct:    14 NSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAAD 71

Query:    64 ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG 123
             +SH+D+ A V    G  +L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIVR L   
Sbjct:    72 LSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAV 131

Query:   124 IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXX 183
             IAK  P A + +I+NPVNSTVPIA+EV KKAG YDPK++ GVT LDVVR+  FV+E    
Sbjct:   132 IAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGH 191

Query:   184 XXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
                         HAG+TI+PLLSQVKP   F++EE   LT RIQ+ GTEVV AKAGAGSA
Sbjct:   192 DASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSA 251

Query:   244 TLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE-LPFFASKVRLGRQGAEEIFQLG 302
             TLSMA A  +FA+A +RG++G+  V +CA+VAS   + + +F++ V LG  G E+I  +G
Sbjct:   252 TLSMALAGARFANALVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVELGPNGVEKILGVG 310

Query:   303 PLNEYERIGLEKAKKELAGSIQKGISFSK 331
              ++ YE+  ++ +  EL  +I KG++F K
Sbjct:   311 KVSAYEQKLIDASVPELNKNIAKGVAFVK 339

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C0PZQ4	MDH_SALPC	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.6090	0.9879	0.9618	N/A	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8666	0.9939	0.9217	N/A	no
B5BGR3	MDH_SALPK	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5806	0.9337	0.9171	yes	no
Q1CEJ3	MDH_YERPN	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.5559	0.9307	0.9935	yes	no
A9R584	MDH_YERPG	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.8885	1.0	0.9325	yes	no
Q1CBY7	MDH_YERPA	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5806	0.9337	0.9171	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.6698	0.9367	0.8962	N/A	no
B7LRL0	MDH_ESCF3	1, ., 1, ., 1, ., 3, 7	0.5477	0.9337	0.9935	yes	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.6623	0.9367	0.9174	N/A	no
A9N855	MDH_SALPB	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.6763	0.9307	0.8904	N/A	no
Q9ZP05	MDHG1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8666	0.9939	0.9322	no	no
A7FMU2	MDH_YERP3	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.9033	0.9969	0.9297	N/A	no
P61892	MDH_YERPE	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5718	0.9307	0.9935	yes	no
A4TRK3	MDH_YERPP	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5774	0.9337	0.9171	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.5591	0.9277	0.9935	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8636	0.9939	0.9217	N/A	no
Q7WS85	MDH_SALPA	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no
P37228	MDHG_SOYBN	1, ., 1, ., 1, ., 3, 7	0.8610	0.9969	0.9376	yes	no
P0C7R5	MDH_YERPS	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5683	0.9789	0.9530	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5806	0.9337	0.9171	yes	no
B4T769	MDH_SALNS	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.5509	0.9337	0.9935	yes	no
B4TWK9	MDH_SALSV	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no
Q6D9D1	MDH_ERWCT	1, ., 1, ., 1, ., 3, 7	0.5495	0.9307	0.9935	yes	no
B1JMK1	MDH_YERPY	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5774	0.9337	0.9171	yes	no
C6DKH1	MDH_PECCP	1, ., 1, ., 1, ., 3, 7	0.5559	0.9307	0.9903	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.9063	0.9969	0.9297	N/A	no
Q5R030	MDH_IDILO	1, ., 1, ., 1, ., 3, 7	0.5641	0.9246	0.9903	yes	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.6442	0.9337	0.8310	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5806	0.9337	0.9171	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8554	1.0	0.9378	yes	no
B2K2N5	MDH_YERPB	1, ., 1, ., 1, ., 3, 7	0.5498	0.9246	0.9839	yes	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5591	0.9307	0.9935	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5654	0.9307	0.9935	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5806	0.9337	0.9171	N/A	no
P25077	MDH_SALTY	1, ., 1, ., 1, ., 3, 7	0.5541	0.9337	0.9935	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
3rd Layer	1.1.1.37	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Mdhg	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (356 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003727001	RecName- Full=Citrate synthase; (472 aa)				•	•	•	•		0.956
	GSVIVG00017898001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)						•	•		0.941
	GSVIVG00028048001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa)						•	•		0.929
	VVME2	RecName- Full=Malic enzyme; (591 aa)						•	•		0.905
	NADP-ME	RecName- Full=Malic enzyme; (496 aa)						•	•		0.905
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•	•		0.903
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•	•		0.903
	GSVIVG00032463001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)						•	•		0.902
	GSVIVG00026767001	RecName- Full=Malic enzyme; (605 aa)						•	•		0.902
	GSVIVG00018984001	RecName- Full=Malic enzyme; (625 aa)						•	•		0.902

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-151
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-144
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-141
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	9e-80
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	7e-58
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	6e-54
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	1e-46
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	2e-45
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	5e-36
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	7e-34
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	1e-31
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	2e-31
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	3e-27
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	2e-23
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	3e-22
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	1e-20
cd00704	323	cd00704, MDH, Malate dehydrogenase	7e-18
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	1e-17
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	6e-16
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	7e-15
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	1e-13
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-13
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	8e-13
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	1e-12
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	2e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	2e-10
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	6e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	8e-08
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	1e-05
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	0.002

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  653 bits (1686), Expect = 0.0
 Identities = 253/325 (77%), Positives = 275/325 (84%), Gaps = 2/325 (0%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
             E S LR   CRAKGGA GFKVA+LGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV
Sbjct: 1   SMEASSLRA--CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV 58

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
            AD+SH++T A VRGFLG  QL +AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+TL
Sbjct: 59  AADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTL 118

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CE +AK CPNA VN+ISNPVNSTVPIAAEV KKAG YDPKKL GVT LDVVRANTFVAE 
Sbjct: 119 CEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEK 178

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
            GLDP DVDVPVVGGHAG+TILPLLSQ  P  SFT EE E LT RIQNGGTEVVEAKAGA
Sbjct: 179 KGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGA 238

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAA +FADACLRGL G+A VVEC++V S+VTELPFFASKVRLGR G EE+  
Sbjct: 239 GSATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLG 298

Query: 301 LGPLNEYERIGLEKAKKELAGSIQK 325
           LGPL+EYE+ GLE  K EL  SI+K
Sbjct: 299 LGPLSEYEQKGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  567 bits (1463), Expect = 0.0
 Identities = 212/309 (68%), Positives = 253/309 (81%)

Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
            KVA+LGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG  
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIVR L   +AK CP A + +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 200
           NSTVPIAAEV KKAG YDPK+L GVT LDVVRANTFVAE+LGLDP  V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 201 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 260
           ILPLLSQ +PP +F QEE E LT+RIQ GG EVV+AKAGAGSATLSMAYA  +FA++ LR
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR 240

Query: 261 GLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 320
           GL+G+ GV+ECA+V S VTE PFFA+ V LG+ G E+   LG LN+YE+  LE A  EL 
Sbjct: 241 GLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK 300

Query: 321 GSIQKGISF 329
            +I+KG+ F
Sbjct: 301 KNIEKGVDF 309

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  426 bits (1096), Expect = e-151
 Identities = 185/312 (59%), Positives = 233/312 (74%), Gaps = 1/312 (0%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G+  
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           LENAL G D+V+IPAGVPRKPGMTRDDLFN+NAGIV+ L   +A+ CP A + +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
           STVPIAAEV KK G YDP KL GVT LD+VRANTFVAE+ G DP +V+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
           +PL+SQ      FT+++ E L +RIQN GTEVV+AKAGAGSATLSMA+A  +F  + +RG
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 262 LRGDAGVVECAFVASQ-VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA 320
           L+G+ GVVECA+V S  VTE  FFA+ + LG+ G E+   +G L+ +E   L  A  EL 
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELK 300

Query: 321 GSIQKGISFSKK 332
            +I+KG  F   
Sbjct: 301 KNIKKGEEFVAS 312

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  409 bits (1053), Expect = e-144
 Identities = 176/313 (56%), Positives = 214/313 (68%), Gaps = 4/313 (1%)

Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L E +AK CP A + +I+NP
Sbjct: 62  -DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
           VN+TV IAAEV KKAG YD  KL GVT LDV+R+ TFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
           R L+G+ GVVECA+V        FFA  V LG+ G EE   +G L+ +E+  LE     L
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299

Query: 320 AGSIQKGISFSKK 332
              I  G  F  K
Sbjct: 300 KKDIALGEEFVNK 312

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  402 bits (1036), Expect = e-141
 Identities = 192/313 (61%), Positives = 234/313 (74%), Gaps = 3/313 (0%)

Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
           FKVA+LGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+    
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
             E AL G DLV+I AGVPRKPGMTRDDLFN NA IVR L   +A   P A V ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 200
           NSTVPIAAE  KKAG YDP+KL GVT LDVVRA  FVAE LG++P DV+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 201 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLR 260
           I+PLLSQ     S  +E+ E +T+R+Q GG EVV+AK GAGSATLSMAYAA +++ + L+
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLK 246

Query: 261 GLRGDAGVVECAFVASQVT-ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
            LRGD G+VECAFV S +  E PFF+S V LG++G E +  +GPLN YE   LE A  +L
Sbjct: 247 ALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDL 306

Query: 320 AGSIQKGISFSKK 332
             +I+KG+ F++K
Sbjct: 307 KKNIEKGLEFARK 319

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  245 bits (627), Expect = 9e-80
 Identities = 113/319 (35%), Positives = 166/319 (52%), Gaps = 21/319 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                 L G D+V+I AGVPRKPGMTR DL   NA IV+ + + IAK  P+A V +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
           V+    IA +    +G    + +   T+LD  R  TF+AE LG+ P+DV   V+G H G 
Sbjct: 121 VDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GD 176

Query: 200 TILPLLSQV----KPPCSF----TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA 251
           T++PL SQ     KP        T+E+ E L  R++N G E++EAK GAG      A A 
Sbjct: 177 TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAAL 234

Query: 252 VKFADACLRGLRGDAGVVECAFVASQ-VTELPFFASKVRLGRQGAEEIFQLGPLNEYERI 310
            +  +A LR  +    +    ++  +   E  +F     LG+ G EEI +L  L++ E+ 
Sbjct: 235 ARMVEAILRDEK--RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQE 291

Query: 311 GLEKAKKELAGSIQKGISF 329
            L+K+ +EL  +I+     
Sbjct: 292 KLDKSAEELKKNIELVKEL 310

Length = 313

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  184 bits (469), Expect = 7e-58
 Identities = 79/176 (44%), Positives = 103/176 (58%), Gaps = 16/176 (9%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQVKPPCSFT 215
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK     T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 216 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGD--AGVVECAF 273
             E E L  R+QN G EV+EAK  AGS T SMAYAA + A A LRG  G    GV    +
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 274 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
                 +  +F+  V LG+ G E++ ++ PLN++ER  LEK+  EL   I+KG +F
Sbjct: 119 Y--GSPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAF 172

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  173 bits (440), Expect = 6e-54
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL   D+V+I AGVPRKPGMTR DL N NAGI + +   IAK  P+A V ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    IA +V   +G    + +  
Sbjct: 121 VDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  159 bits (405), Expect = 1e-46
 Identities = 102/323 (31%), Positives = 158/323 (48%), Gaps = 46/323 (14%)

Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTGAVVRGF 76
           ++I+GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       +   V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
                +  +    D+V+I AG+PRKPGM+RDDL   NA IV+ + E I K  PNA V ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++        V  KA  +   +++G+  +LD  R   F+AE LG+  +DV   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
           H G T++PL         P     T+EE + +  R +NGG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
             +  +A L+           L G+ G+ +          +P     V LG+ G E+I +
Sbjct: 229 IAEMVEAILKDKKRVLPCSAYLEGEYGIKDIFV------GVP-----VVLGKNGVEKIIE 277

Query: 301 LGPLNEYERIGLEKAKKELAGSI 323
           L  L + E+   +K+ + +   I
Sbjct: 278 L-DLTDEEKEAFDKSVESVKELI 299

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  156 bits (398), Expect = 2e-45
 Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 44/325 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K++I+GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF  +
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N    + G D+V+I AGVPRKPGM+RDDL  INA I++ + EGI K  P+A V ++
Sbjct: 59  ITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NPV++   +A     K   +   +++G+  +LD  R  TF+AE L +  +DV   V+GG
Sbjct: 119 TNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGG 174

Query: 196 HAGVTILPLLSQ-----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
           H G +++PL+       +      ++E+ + +  R + GG E+V      GSA  + A +
Sbjct: 175 H-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAAS 232

Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
             +  +A L+           L G+ GV +          +P     V+LG+ G E+I +
Sbjct: 233 IAEMVEAILKDKKRVLPCSAYLEGEYGVKDVYV------GVP-----VKLGKNGVEKIIE 281

Query: 301 LGPLNEYERIGLEKAKKELAGSIQK 325
           L  L++ E+   +K+ + +   I+ 
Sbjct: 282 L-ELDDEEKAAFDKSVEAVKKLIEA 305

Length = 307

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  130 bits (329), Expect = 5e-36
 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 23  VAILGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG 78
           +A++GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
                 A    D+VII AGV RKPGM R DL   N  IV+ + + I K  P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 198
           PV+    I   +  +      +K++G+  LD +R    +AE LG+DP DV V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 199 VTILPLLSQVKP 210
            + +P  S V+ 
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  126 bits (318), Expect = 7e-34
 Identities = 95/305 (31%), Positives = 149/305 (48%), Gaps = 31/305 (10%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTGAVVRGFLG 78
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
               E  +   D+V+I AGV RK  MTR+DL  IN  I++++ E + K CPNA V  ++N
Sbjct: 65  TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 197
           P++       +VF++       K+ G+  +LD  R    +AE LG+ P DV   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 198 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           G  ++PL         P   F      T++E   +  + +N G E+V+     GSA  + 
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAP 237

Query: 248 AYAAVKFADACLRGLRGDAGVVECAFVAS---QVTELPFFASKVRLGRQGAEEIFQLGPL 304
           A A V   +A L+  +    V+ C+   +       L F    V +G +G E++ +L  L
Sbjct: 238 AAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL-FVGVPVVIGGKGIEKVIEL-EL 292

Query: 305 NEYER 309
           N  E+
Sbjct: 293 NAEEK 297

Length = 319

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  120 bits (303), Expect = 1e-31
 Identities = 105/319 (32%), Positives = 172/319 (53%), Gaps = 36/319 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVR-GFLG 78
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATV 133
               E+ + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CPNA V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPV 192
            +I+NP++  V    ++ ++       K+ G+  +LD  R  T++AE LG++PRDV   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 193 VGGHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           +G H G  ++PL   V     P   F      TQEE + +  R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQ--VTELPFFASKVRLGRQGAEEIF 299
           A  + A AA++ A+A L+  +    V+ C A++  Q    ++ +  +   +G  G E+I 
Sbjct: 239 AYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDI-YMGTPAVIGANGVEKII 294

Query: 300 QLGPLNEYERIGLEKAKKE 318
           +L  L   E+   +++ KE
Sbjct: 295 EL-DLTPEEQKKFDESIKE 312

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  119 bits (300), Expect = 2e-31
 Identities = 89/318 (27%), Positives = 140/318 (44%), Gaps = 44/318 (13%)

Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRGF 76
           + I+GA G +G  +A  +    L S L L DV      G   D+SH      TG +VRG 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG- 58

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
                        D+V+I AG PRKPG TR DL N NA I+R++   + K  P+A + ++
Sbjct: 59  ----GDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           SNPV+    I   V +K       +++G  T+LD  R  + +AE L +DP+ V   V+G 
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170

Query: 196 HAGVTILPLLSQVK-------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGA----GSAT 244
           H G + +   S              FT+ + E +   ++  G E++  K        +A 
Sbjct: 171 H-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYGIATAI 229

Query: 245 LSMAYAAVKFADACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
             +  + +      L       G  G+ + A        +P       +GR+G   I ++
Sbjct: 230 ADIVKSILLDERRVLPVSAVQEGQYGIEDVAL------SVP-----AVVGREGVVRILEI 278

Query: 302 GPLNEYERIGLEKAKKEL 319
            PL E E   L+K+ + L
Sbjct: 279 -PLTEDEEAKLQKSAEAL 295

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  108 bits (271), Expect = 3e-27
 Identities = 89/313 (28%), Positives = 152/313 (48%), Gaps = 36/313 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----L 77
           K++++GA G +G   A  +    L  ++ L DVV        +   +   V  GF     
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPV-GGFDTKVT 59

Query: 78  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
           G     +     D+V+I AG+PRKPGM+R+DL ++NAGIVR +   I +  PN  + ++S
Sbjct: 60  GTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGH 196
           NP+++   +A +       +  ++++G   +LD  R  TF+A  LG+  +DV   V+GGH
Sbjct: 119 NPLDAMTYVAWQK----SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGH 174

Query: 197 AGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 246
            G  ++PL          ++ +        E    +  R + GG E+V      GSA  +
Sbjct: 175 -GDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNL-LKQGSAYYA 227

Query: 247 MAYAAVKFADACLRGLRGDAGVVEC-AFVASQV-TELPFFASKVRLGRQGAEEIFQLGPL 304
            A + V+  +A L+  +    V+ C A++  Q   +  +    V LG+ G E I++L  L
Sbjct: 228 PAASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KL 283

Query: 305 NEYERIGLEKAKK 317
           ++ E   L K+ K
Sbjct: 284 DQSELALLNKSAK 296

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 97.9 bits (244), Expect = 2e-23
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 43/243 (17%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 64
           KV+I+GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 65  SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI 124
                 + V              G D+VII AGVPRK GM+R DL   NA IV+   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 125 AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGL 183
           A+  P+  + +++NPV+     A    K++G +D  ++ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 184 DPRDVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEA 236
              +V   ++G H G +++PL+S        +K    +   + E +   ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 237 KAG 239
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 64/247 (25%), Positives = 113/247 (45%), Gaps = 24/247 (9%)

Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
               DLV+I AG P+KPG TR +L   N  I++++   + K   +    + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH-------- 196
           I   V  K   +   +++G  T+LD  R    +AE LG+DP+ V   ++G H        
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVW 177

Query: 197 --AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKF 254
             A +  +PLL  +K   + T  + E +   +++   E++  K   G+    +  A  + 
Sbjct: 178 SSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIGMAVARI 234

Query: 255 ADACLRGLRGDAGVVEC-AFVASQVTELPFFASKVR-LGRQGAEEIFQLGPLNEYERIGL 312
            +A L        V+   A++  +      +      LGR G EEI +L PL++ E+   
Sbjct: 235 VEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAF 290

Query: 313 EKAKKEL 319
           +K+ + L
Sbjct: 291 QKSAETL 297

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 67/261 (25%), Positives = 110/261 (42%), Gaps = 47/261 (18%)

Query: 89  MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 148
            D+V+I AG P+KPG TR DL   NA I++++   I     +    + SNPV+    +  
Sbjct: 69  ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VIT 124

Query: 149 EVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH----------- 196
            V +K       +++G  T LD  R    +AE L +DPR V   V+G H           
Sbjct: 125 YVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV 184

Query: 197 --AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKF 254
              G  +L LL + K     ++ + + +   ++  G E++  K   G+    +A A  + 
Sbjct: 185 TVGGKPLLDLLKEGK----LSELDLDEIEEDVRKAGYEIINGK---GATYYGIATALARI 237

Query: 255 ADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPL 304
             A L            L G+ G  +            +      +GR G EE+ +L  L
Sbjct: 238 VKAILNDENAILPVSAYLDGEYGEKDV-----------YIGVPAIIGRNGVEEVIEL-DL 285

Query: 305 NEYERIGLEKAKKELAGSIQK 325
            E E+   EK+   +  +I+K
Sbjct: 286 TEEEQEKFEKSADIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 82.3 bits (204), Expect = 7e-18
 Identities = 72/262 (27%), Positives = 104/262 (39%), Gaps = 48/262 (18%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-- 72
            V I GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 73  -------VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA 125
                  ++G +     E A   +D+ I+    PRKPGM R DL   NA I +   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 126 KCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLD 184
           K   P   V ++ NP N+   IA    K A    PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 185 PRDV-DVPVVGGHAGVTILPLLSQ-------------VKPPCSFTQEETEYLTNRIQNGG 230
             DV +V + G H+  T +P LS                    +  +E       +Q  G
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDE---FVKTVQKRG 226

Query: 231 TEVVEAKAGAGSATLSMAYAAV 252
             +++ + GA SA  S A A  
Sbjct: 227 AAIIKKR-GASSA-ASAAKAIA 246

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 92/330 (27%), Positives = 142/330 (43%), Gaps = 52/330 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTGAVVRGFL 77
           KVAI+GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 78  GQPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
           G     + A    D+V+I AG  +KPG TR DL   N  I + +   I K  P+A + ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NPV+    +   V  K     P +++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 196 H-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA-- 240
           H              GV +         P  F +E  E +   ++N   E++E K GA  
Sbjct: 172 HGDSEVAVWSSANIGGVPLDEFCKLCGRP--FDEEVREEIFEEVRNAAYEIIERK-GATY 228

Query: 241 ---GSATLSMAYAAVKFADACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
              G A   +  A ++  ++ L     L G  G+ + A        LP     V  GR G
Sbjct: 229 YAIGLALARIVEAILRDENSVLTVSSLLDGQYGIKDVAL------SLP---CIV--GRSG 277

Query: 295 AEEIFQLGPLNEYERIGLEKAKKELAGSIQ 324
            E +    PL+E E   L  + + L  +I+
Sbjct: 278 VERVLPP-PLSEEEEEALRASAEVLKEAIE 306

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 77.0 bits (190), Expect = 6e-16
 Identities = 88/323 (27%), Positives = 135/323 (41%), Gaps = 36/323 (11%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 71  -AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 128
             ++ G +     E A   +D  ++    PRKPGM R DL + N  I +   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 129 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            +  V ++ NP N+   IA+   K A    PK    +T LD  RA   +A   G+   DV
Sbjct: 121 KDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 189 DVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGAG 241
              ++ G+   T +P  +       P     ++ ++L       +Q  G  V+EA+ GA 
Sbjct: 178 KNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-GAS 236

Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGRQGAE 296
           SA  S A AA+      + G     G      V S      + E   F+  V     G  
Sbjct: 237 SA-ASAANAAIDHVRDWVTGTP--EGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEW 293

Query: 297 EIFQLGPLNEYERIGLEKAKKEL 319
           EI +  PL+++ R  L+  + EL
Sbjct: 294 EIVEGLPLDDFVRGKLDATEDEL 316

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 73.9 bits (182), Expect = 7e-15
 Identities = 57/193 (29%), Positives = 82/193 (42%), Gaps = 31/193 (16%)

Query: 85  ALTGMDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142
                D+++I AG    PG T  R DL   NA I+R +   I K    A + LI+NP++ 
Sbjct: 65  DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDI 124

Query: 143 TVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
            V IAA  F     Y   K++G  TMLD  R    VA+  G+DP++V   V+G H G   
Sbjct: 125 AVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHA 179

Query: 202 LPLLSQV---------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 246
            P+ S V               K P        + L   +     +V   K G  +A ++
Sbjct: 180 FPVWSLVNIAGLPLDELEALFGKEPID-----KDELLEEVVQAAYDVFNRK-GWTNAGIA 233

Query: 247 MAYAAVKFADACL 259
              +A +   A L
Sbjct: 234 K--SASRLIKAIL 244

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 82/337 (24%), Positives = 135/337 (40%), Gaps = 57/337 (16%)

Query: 20  GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF 76
             KV ++G    G+   +++L K   L   L L DVV     G   D+ H   G+    F
Sbjct: 3   RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH---GSA---F 54

Query: 77  LGQPQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131
           L  P++E     +      +VI+ AG  +  G +R DL   N  I + +   + K  PNA
Sbjct: 55  LKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNA 114

Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 190
            + ++SNPV+    I   V  K       +++G    LD  R    +AE LG+ P  V  
Sbjct: 115 ILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHG 170

Query: 191 PVVGGH--------AGVTI--LPLLSQVKPPCSFTQEETEY-LTNRIQNGGTEVVEAKAG 239
            ++G H        +GV +  + L        +    E    +  ++ +   EV++ K  
Sbjct: 171 WIIGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK-- 228

Query: 240 AGSATLSMAYAAVKFADACLRGLR----------GDAGVVECAFVASQVTELPFFASKVR 289
            G  + ++  +     DA LR             G  G+ +  F++     LP       
Sbjct: 229 -GYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLS-----LP-----CI 277

Query: 290 LGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG 326
           LG  G   + +  PL E E+  L+K+   L   +QK 
Sbjct: 278 LGENGITHVIKQ-PLTEEEQEKLQKSADTLW-EVQKQ 312

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 69/254 (27%), Positives = 104/254 (40%), Gaps = 31/254 (12%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTG-A 71
           +V + GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 72  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPN 130
           ++ G +       A T +D+ I+    PRK GM R DL + N  I +     + K    +
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 189
             V ++ NP N+   + +     A +  PK    +T LD  RA   VAE  G+   DV +
Sbjct: 119 CKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 190 VPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR-----------IQNGGTEVVEAKA 238
           V + G H+  T  P ++         Q+                   +Q  G  ++ A+ 
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233

Query: 239 GAGSATLSMAYAAV 252
              S+ LS A AAV
Sbjct: 234 -KLSSALSAAKAAV 246

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 36/251 (14%)

Query: 88  GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 147
             DLV+I AG P+KPG TR DL   N  I +++   +     +    + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 148 AEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH---------- 196
                K   +  ++++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 197 AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA- 255
           A V  +PL   ++    + +E+ + +   +++   E++E K GA    ++MA A +  A 
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GATYYGIAMALARITKAI 247

Query: 256 ----DACL---RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE 308
               +A L     L G  G  +            +      + R G  EI +L PLN+ E
Sbjct: 248 LNNENAVLPVSAYLEGQYGEEDV-----------YIGVPAVVNRNGIREIVEL-PLNDDE 295

Query: 309 RIGLEKAKKEL 319
           +     +   L
Sbjct: 296 KQKFAHSADVL 306

Length = 315

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 82/326 (25%), Positives = 140/326 (42%), Gaps = 39/326 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 79
           KV+++G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 80  PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
            ++    + A+T G DL I+ AG  + PG +R +L   N  + R +   +AK  P+  + 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           ++SNPV+    +A   +K +G +   +++G  T LD  R    +A+ L ++ +DV   +V
Sbjct: 152 IVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           G H              GV +L  L   K   ++ +E  E +   + +   EV++ K   
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLK--- 262

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFAS-KVRLGRQGAEEIF 299
           G  + ++ Y+      + LR  R    V   A     + E   F S   +LGR G   + 
Sbjct: 263 GYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVV 322

Query: 300 QLGPLNEYERIGLEKAKKELAGSIQK 325
            +  L + E   L K+ K L     +
Sbjct: 323 NV-HLTDEEAERLRKSAKTLWEVQSQ 347

Length = 350

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 64/255 (25%), Positives = 105/255 (41%), Gaps = 33/255 (12%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADIS-HMDTGA-- 71
           +V + GAAG I   L        +     P++  LHL D+         +   +   A  
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDIPPALKALEGVVMELQDCAFP 61

Query: 72  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PN 130
           +++  +     E A   +D+ I+   +PRK GM R DL   N  I +   E + K    N
Sbjct: 62  LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKN 121

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 189
             V ++ NP N+   I     K A +   +    +T LD  RA + +A  LG+   DV +
Sbjct: 122 VKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKN 178

Query: 190 VPVVGGHAGVTILPLLSQ--------VKPPCSFTQEETEYLTN----RIQNGGTEVVEAK 237
           V + G H+  T  P ++          KP     +++  +L       +Q  G  V++A+
Sbjct: 179 VIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDD-AWLNGEFISTVQKRGAAVIKAR 236

Query: 238 AGAGSATLSMAYAAV 252
               SA +S A A  
Sbjct: 237 -KLSSA-MSAAKAIC 249

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 75  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATV 133
           G +   +LE A   +D   + A VP KPG  R DL   N  I +   E +++   P   V
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193
            +I NPVN+   +A      A     +    + MLD  RA + +A  L +    +   VV
Sbjct: 107 LVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163

Query: 194 GGHAGVTILPLLSQV 208
            G+   +++  L+  
Sbjct: 164 WGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 52.9 bits (127), Expect = 6e-08
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 27  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLEN 84
           G   G  QP+ + ++ I P    L+        GV  ++  +D    +++G +    +  
Sbjct: 5   GVMLGPDQPVILHMLDIPPAAEALN--------GVKMEL--IDAAFPLLKGVVATTDVVE 54

Query: 85  ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 143
           A  G+++ ++  G PRK GM R D+ + N  I ++    + K   P+  V +++NP N+ 
Sbjct: 55  ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTN 114

Query: 144 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHA 197
             I  E    A +   K +  +T LD  RA   ++E LG+   DV +V + G H+
Sbjct: 115 ALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS 166

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 63/252 (25%), Positives = 101/252 (40%), Gaps = 31/252 (12%)

Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 71  A--VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C 127
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 128 CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRD 187
             +  V ++ NP N+   IA    K A    P     +T LD  RA + +A+  G+   D
Sbjct: 119 SRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 188 VDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 240
           V   V+ G+   T  P  +       P +    +  +L +     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 241 GSATLSMAYAAV 252
            SA  S A AA+
Sbjct: 235 SSAA-SAANAAI 245

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 68/253 (26%), Positives = 107/253 (42%), Gaps = 33/253 (13%)

Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGA 71
           +VA+ GAAG IG  L        ML K  P++  L L ++   P + A    +  +D  A
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKALEGVVMELDDCA 61

Query: 72  --VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 128
             ++ G +       A    D+ ++    PR PGM R DL   N  I     + + +   
Sbjct: 62  FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121

Query: 129 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            +  V ++ NP N+   IA    K A     +    +T LD  RA + +A   G+   D+
Sbjct: 122 RDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADI 178

Query: 189 -DVPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN----RIQNGGTEVVEAKAG 239
             + V G H+  T  P         KP      ++  +L +     +Q  G  ++EA+ G
Sbjct: 179 KKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAIIEAR-G 235

Query: 240 AGSATLSMAYAAV 252
           A SA  S A AA+
Sbjct: 236 ASSAA-SAANAAI 247

Length = 326

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 99  PRKPGMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 154
           PR PGM R DL +IN  I     + L E +A    N  V ++ NP N+   I     K A
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKALNE-VAS--RNVKVIVVGNPCNTNALIC---LKNA 240

Query: 155 GTYDPKKLLGVTMLDVVRA 173
                K    +T LD  RA
Sbjct: 241 PNIPAKNFHALTRLDENRA 259

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
PLN00106	323	malate dehydrogenase	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	100.0
PRK15076	431	alpha-galactosidase; Provisional	99.98
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.98
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.98
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.97
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.96
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.96
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.86
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.12
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.01
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.0
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.84
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.82
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.81
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.8
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.8
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.76
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.76
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.74
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.65
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.63
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.54
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.52
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.5
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.5
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.47
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.44
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.42
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.42
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.42
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.4
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.39
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.37
PLN02427	386	UDP-apiose/xylose synthase	98.31
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.3
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.3
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.29
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.28
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.27
PLN00198	338	anthocyanidin reductase; Provisional	98.24
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.22
PLN02650	351	dihydroflavonol-4-reductase	98.22
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.21
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.2
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.19
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.19
PLN02206	442	UDP-glucuronate decarboxylase	98.18
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.16
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.12
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.11
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.09
CHL00194	317	ycf39 Ycf39; Provisional	98.09
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.09
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.08
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.07
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.07
PLN02214	342	cinnamoyl-CoA reductase	98.05
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.03
PRK06194	287	hypothetical protein; Provisional	98.01
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.99
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.97
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.96
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.95
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.93
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.93
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.93
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.93
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	97.92
PLN03209	576	translocon at the inner envelope of chloroplast su	97.92
PLN02778	298	3,5-epimerase/4-reductase	97.92
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.88
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.87
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.87
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.86
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.86
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.85
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.85
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.85
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.83
PLN02583	297	cinnamoyl-CoA reductase	97.81
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.8
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.8
PLN02260	668	probable rhamnose biosynthetic enzyme	97.79
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.77
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.77
PLN02653	340	GDP-mannose 4,6-dehydratase	97.77
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.76
PLN02572	442	UDP-sulfoquinovose synthase	97.72
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.7
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.67
PLN02240	352	UDP-glucose 4-epimerase	97.65
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.62
PLN02253	280	xanthoxin dehydrogenase	97.62
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.61
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.61
PLN02686	367	cinnamoyl-CoA reductase	97.6
PRK08643	256	acetoin reductase; Validated	97.6
PRK07201	657	short chain dehydrogenase; Provisional	97.6
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.6
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.59
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.59
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	97.58
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.56
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.56
PRK08267	260	short chain dehydrogenase; Provisional	97.56
PRK07102	243	short chain dehydrogenase; Provisional	97.54
PRK07417	279	arogenate dehydrogenase; Reviewed	97.54
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.54
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.52
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.5
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.5
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.5
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.49
PRK12829	264	short chain dehydrogenase; Provisional	97.49
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.48
PRK06482	276	short chain dehydrogenase; Provisional	97.48
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.48
PRK05875	276	short chain dehydrogenase; Provisional	97.47
PRK06914	280	short chain dehydrogenase; Provisional	97.47
PRK07806	248	short chain dehydrogenase; Provisional	97.46
PRK05865	854	hypothetical protein; Provisional	97.45
PRK06172	253	short chain dehydrogenase; Provisional	97.45
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.44
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.44
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	97.44
PRK12320	699	hypothetical protein; Provisional	97.44
PRK05717	255	oxidoreductase; Validated	97.44
PRK07067	257	sorbitol dehydrogenase; Provisional	97.43
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.43
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.43
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.43
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.43
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.42
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.42
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.41
PRK08655	437	prephenate dehydrogenase; Provisional	97.4
PRK06180	277	short chain dehydrogenase; Provisional	97.4
PRK12937	245	short chain dehydrogenase; Provisional	97.39
PRK08278	273	short chain dehydrogenase; Provisional	97.39
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.39
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.38
PRK06924	251	short chain dehydrogenase; Provisional	97.38
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.38
PLN02688	266	pyrroline-5-carboxylate reductase	97.37
PRK07680	273	late competence protein ComER; Validated	97.37
PRK05876	275	short chain dehydrogenase; Provisional	97.37
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.37
PRK07326	237	short chain dehydrogenase; Provisional	97.37
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.37
PRK09135	249	pteridine reductase; Provisional	97.36
PRK07063	260	short chain dehydrogenase; Provisional	97.36
PRK07814	263	short chain dehydrogenase; Provisional	97.34
PRK10538	248	malonic semialdehyde reductase; Provisional	97.34
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.32
PRK08265	261	short chain dehydrogenase; Provisional	97.32
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.32
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.32
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.31
PRK06545	359	prephenate dehydrogenase; Validated	97.3
PRK09291	257	short chain dehydrogenase; Provisional	97.29
PRK07069	251	short chain dehydrogenase; Validated	97.29
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.29
PRK12828	239	short chain dehydrogenase; Provisional	97.29
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.28
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.28
PRK07832	272	short chain dehydrogenase; Provisional	97.28
PRK07576	264	short chain dehydrogenase; Provisional	97.28
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.27
PRK06128	300	oxidoreductase; Provisional	97.27
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.26
PRK12827	249	short chain dehydrogenase; Provisional	97.26
PRK14982	340	acyl-ACP reductase; Provisional	97.26
PRK06182	273	short chain dehydrogenase; Validated	97.25
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.24
PRK08589	272	short chain dehydrogenase; Validated	97.23
PRK06181	263	short chain dehydrogenase; Provisional	97.21
PRK07024	257	short chain dehydrogenase; Provisional	97.21
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.2
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.2
PRK12939	250	short chain dehydrogenase; Provisional	97.19
PRK07856	252	short chain dehydrogenase; Provisional	97.19
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.18
PLN02996	491	fatty acyl-CoA reductase	97.17
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.17
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.17
PRK06841	255	short chain dehydrogenase; Provisional	97.16
PRK06179	270	short chain dehydrogenase; Provisional	97.16
PRK12367	245	short chain dehydrogenase; Provisional	97.15
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.15
PRK07890	258	short chain dehydrogenase; Provisional	97.15
PRK12746	254	short chain dehydrogenase; Provisional	97.14
PRK08507	275	prephenate dehydrogenase; Validated	97.14
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.14
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.14
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.13
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.13
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.13
PRK12480	330	D-lactate dehydrogenase; Provisional	97.13
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	97.13
PRK12935	247	acetoacetyl-CoA reductase; Provisional	97.12
PRK07478	254	short chain dehydrogenase; Provisional	97.11
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.11
PRK06500	249	short chain dehydrogenase; Provisional	97.1
PLN02780	320	ketoreductase/ oxidoreductase	97.1
PRK07985	294	oxidoreductase; Provisional	97.09
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.09
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.09
PRK07774	250	short chain dehydrogenase; Provisional	97.08
PRK06701	290	short chain dehydrogenase; Provisional	97.08
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.08
PRK06138	252	short chain dehydrogenase; Provisional	97.07
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	97.07
PRK05866	293	short chain dehydrogenase; Provisional	97.05
PRK05854	313	short chain dehydrogenase; Provisional	97.05
PRK07035	252	short chain dehydrogenase; Provisional	97.04
PRK08251	248	short chain dehydrogenase; Provisional	97.04
PRK05993	277	short chain dehydrogenase; Provisional	97.03
PRK06101	240	short chain dehydrogenase; Provisional	97.03
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.03
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.03
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.02
PRK08339	263	short chain dehydrogenase; Provisional	97.02
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.01
PRK08226	263	short chain dehydrogenase; Provisional	97.01
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.01
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.01
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.01
PRK06949	258	short chain dehydrogenase; Provisional	97.01
PRK07831	262	short chain dehydrogenase; Provisional	96.99
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.99
PRK07825	273	short chain dehydrogenase; Provisional	96.99
PRK08263	275	short chain dehydrogenase; Provisional	96.98
PRK06197	306	short chain dehydrogenase; Provisional	96.98
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.98
PRK05650	270	short chain dehydrogenase; Provisional	96.98
PRK12742	237	oxidoreductase; Provisional	96.98
PLN02256	304	arogenate dehydrogenase	96.97
PRK12743	256	oxidoreductase; Provisional	96.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.97
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.96
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.96
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.96
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.95
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.95
COG2910	211	Putative NADH-flavin reductase [General function p	96.95
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.95
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.95
PRK09072	263	short chain dehydrogenase; Provisional	96.94
PRK08628	258	short chain dehydrogenase; Provisional	96.94
PRK08219	227	short chain dehydrogenase; Provisional	96.93
PRK07060	245	short chain dehydrogenase; Provisional	96.93
PRK07109	334	short chain dehydrogenase; Provisional	96.92
PRK07074	257	short chain dehydrogenase; Provisional	96.91
PRK12747	252	short chain dehydrogenase; Provisional	96.91
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.9
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.9
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.9
PRK08177	225	short chain dehydrogenase; Provisional	96.9
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	96.9
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.89
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.89
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.89
PRK05855	582	short chain dehydrogenase; Validated	96.87
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.87
PRK09242	257	tropinone reductase; Provisional	96.87
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.86
PRK06196	315	oxidoreductase; Provisional	96.86
PRK05884	223	short chain dehydrogenase; Provisional	96.86
PRK06198	260	short chain dehydrogenase; Provisional	96.86
PRK06139	330	short chain dehydrogenase; Provisional	96.86
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.86
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.85
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.85
PLN02260	668	probable rhamnose biosynthetic enzyme	96.84
PRK05693	274	short chain dehydrogenase; Provisional	96.84
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.84
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	96.84
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
PRK06057	255	short chain dehydrogenase; Provisional	96.83
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.83
PRK06523	260	short chain dehydrogenase; Provisional	96.81
PRK08264	238	short chain dehydrogenase; Validated	96.8
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.8
PRK05867	253	short chain dehydrogenase; Provisional	96.79
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.79
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.79
PRK13243	333	glyoxylate reductase; Reviewed	96.78
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.78
PRK08818	370	prephenate dehydrogenase; Provisional	96.78
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.78
PRK09186	256	flagellin modification protein A; Provisional	96.77
PRK07023	243	short chain dehydrogenase; Provisional	96.77
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	96.77
PRK06398	258	aldose dehydrogenase; Validated	96.75
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.75
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.75
PLN00016	378	RNA-binding protein; Provisional	96.75
PRK12744	257	short chain dehydrogenase; Provisional	96.75
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.74
PRK07904	253	short chain dehydrogenase; Provisional	96.74
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.73
PRK06123	248	short chain dehydrogenase; Provisional	96.72
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.72
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.71
PLN02712	667	arogenate dehydrogenase	96.7
PRK08324	681	short chain dehydrogenase; Validated	96.7
PRK07454	241	short chain dehydrogenase; Provisional	96.7
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.7
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.7
PRK09134	258	short chain dehydrogenase; Provisional	96.69
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.67
PRK07062	265	short chain dehydrogenase; Provisional	96.67
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.66
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.66
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.65
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.65
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.63
PRK07574	385	formate dehydrogenase; Provisional	96.63
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	96.62
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.62
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.61
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.61
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.6
PRK08703	239	short chain dehydrogenase; Provisional	96.6
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.59
PRK05599	246	hypothetical protein; Provisional	96.59
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.58
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.58
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.57
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.56
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.56
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.55
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	96.55
PRK07677	252	short chain dehydrogenase; Provisional	96.51
PRK06483	236	dihydromonapterin reductase; Provisional	96.5
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.49
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.46
PRK05872	296	short chain dehydrogenase; Provisional	96.46
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.45
PRK07577	234	short chain dehydrogenase; Provisional	96.44
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.44
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	96.44
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.43
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.43
PRK08605	332	D-lactate dehydrogenase; Validated	96.42
PLN03139	386	formate dehydrogenase; Provisional	96.42
PRK06114	254	short chain dehydrogenase; Provisional	96.42
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.41
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.41
PRK07775	274	short chain dehydrogenase; Provisional	96.41
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.4
PRK08291	330	ectoine utilization protein EutC; Validated	96.4
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.39
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.39
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.38
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.36
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.36
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.35
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.34
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.34
PRK06953	222	short chain dehydrogenase; Provisional	96.32
PLN02928	347	oxidoreductase family protein	96.32
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.31
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.29
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.29
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.28
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.28
PRK07201	657	short chain dehydrogenase; Provisional	96.25
PLN02712	667	arogenate dehydrogenase	96.24
PRK06484	520	short chain dehydrogenase; Validated	96.24
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.23
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.22
PLN02503	605	fatty acyl-CoA reductase 2	96.21
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.21
PRK06125	259	short chain dehydrogenase; Provisional	96.2
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.19
PRK08223	287	hypothetical protein; Validated	96.19
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.17
PRK07578	199	short chain dehydrogenase; Provisional	96.16
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.14
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.13
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.13
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.12
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.11
PRK08618	325	ornithine cyclodeaminase; Validated	96.11
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.11
PRK09496	453	trkA potassium transporter peripheral membrane com	96.1
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.08
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.06
PRK06484	520	short chain dehydrogenase; Validated	96.05
PRK08303	305	short chain dehydrogenase; Provisional	96.05
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.05
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.03
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.02
PRK06940	275	short chain dehydrogenase; Provisional	95.99
PRK08862	227	short chain dehydrogenase; Provisional	95.97
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.97
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.96
PRK07340	304	ornithine cyclodeaminase; Validated	95.94
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.93
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.93
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.88
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.88
PRK06407	301	ornithine cyclodeaminase; Provisional	95.87
PRK08017	256	oxidoreductase; Provisional	95.85
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.85
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.84
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.84
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.82
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	95.82
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.82
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.81
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.8
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.79
PRK07589	346	ornithine cyclodeaminase; Validated	95.78
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.76
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.76
PLN02383	344	aspartate semialdehyde dehydrogenase	95.75
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	95.74
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.74
PRK06141	314	ornithine cyclodeaminase; Validated	95.74
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.72
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	95.72
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	95.71
PRK07791	286	short chain dehydrogenase; Provisional	95.7
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.7
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.65
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.64
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	95.64
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	95.63
PLN02494	477	adenosylhomocysteinase	95.62
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.61
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.6
PRK13529	563	malate dehydrogenase; Provisional	95.6
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.6
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.59
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.58
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.58
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.56
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	95.53
PRK06823	315	ornithine cyclodeaminase; Validated	95.5
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.5
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.49
PLN03129	581	NADP-dependent malic enzyme; Provisional	95.46
PRK07411	390	hypothetical protein; Validated	95.41
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.4
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	95.4
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.39
PRK06199	379	ornithine cyclodeaminase; Validated	95.38
PTZ00317	559	NADP-dependent malic enzyme; Provisional	95.37
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	95.36
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.35
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.35
PRK07877	722	hypothetical protein; Provisional	95.34
PRK06436	303	glycerate dehydrogenase; Provisional	95.34
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.34
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.34
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	95.3
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.3
PRK06046	326	alanine dehydrogenase; Validated	95.29
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.28

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=3.4e-68  Score=494.72  Aligned_cols=309  Identities=68%  Similarity=1.075  Sum_probs=281.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+||||+|+||+++|+.|+.+++..||+|+|++.++|+++||.|+.....++...+++|++++++|||+||+|+|.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999999899999999999999998999999998678999999999754566643234466799999999999999999


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHH
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  180 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~  180 (332)
                      ++|++|+|++..|.++++++++.|.+++|++|+|++|||+|++|+++++++++.+++|++||||+|.||++|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998999999999999999999889999999999999


Q ss_pred             hCCCCCCCceeEEEec-CCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHH
Q 020049          181 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL  259 (332)
Q Consensus       181 l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~  259 (332)
                      +|+++++|+++||||| |+ +++|+||.+.+...+++++++++.+++++++++|++.|.|||+++||+|.++++++++|+
T Consensus       161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl  239 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLL  239 (310)
T ss_pred             hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 88 999999999875456666689999999999999999766789999999999999999999


Q ss_pred             cCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020049          260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFS  330 (332)
Q Consensus       260 ~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~  330 (332)
                      +|+++++.++++++++|+-.+++|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|+
T Consensus       240 ~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         240 RGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             HhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            88654445777787776535789999999999999999998525999999999999999999999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3.2e-68  Score=495.76  Aligned_cols=310  Identities=59%  Similarity=0.952  Sum_probs=281.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  101 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~  101 (332)
                      ||+||||+|+||+++|+.|+..++..||+|+|++++.|+++||.|......+..+.+.++++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999999999999999999999889999999998889999999987434555432223567999999999999999999


Q ss_pred             CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHh
Q 020049          102 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL  181 (332)
Q Consensus       102 ~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l  181 (332)
                      +|++|+|++..|.++++++++.|.+++|++++|++|||+|++++++++++++.+|+|++||||+|.||++|+++++|+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888999999999999999998899999999999999


Q ss_pred             CCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHHcC
Q 020049          182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG  261 (332)
Q Consensus       182 ~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~  261 (332)
                      +++|++|+++||||||+.+++|+||.++....+++++++++.+++++++++|++.|.|||+++||+|.++++++++|+++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999986589999999986444666668999999999999999976678999999999999999999965


Q ss_pred             CCCCCcEEEeeEEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 020049          262 LRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK  331 (332)
Q Consensus       262 ~~~~~~v~~~~~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~  331 (332)
                      ..+++.++++++++|+| ++++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|++
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~  311 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVA  311 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33334688988999998 78999999999999999999985489999999999999999999999999986

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=7e-66  Score=481.76  Aligned_cols=315  Identities=79%  Similarity=1.208  Sum_probs=286.5

Q ss_pred             hhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 020049           10 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        10 ~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      .-||++++..+.||+||||+|+||+++++.|+.+++..||+|+|+++++++++||.|+.....+..+.+++|++++++||
T Consensus         8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106          8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence            46999999999999999999999999999999999988999999998889999999987655666544567888999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhh
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  169 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld  169 (332)
                      |+||+++|.|+++|++|.|++..|.++++++++.+.+++|+++++++|||+|.+++++++++++.+++|++|+||+|.||
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD  167 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD  167 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence            99999999999999999999999999999999999999999999999999997777667777899999999999998899


Q ss_pred             HHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHH
Q 020049          170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY  249 (332)
Q Consensus       170 ~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~  249 (332)
                      ++|+++++|+++|+++.+|+++|+|+||+.+++|+||.+.+...+++++++++.+++++++++|++.|.|||+++||+|.
T Consensus       168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~  247 (323)
T PLN00106        168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY  247 (323)
T ss_pred             HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence            99999999999999999999999999965599999999976434666678999999999999999975568999999999


Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 020049          250 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  324 (332)
Q Consensus       250 a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~  324 (332)
                      ++++++++|++|+++++.++++++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus       248 a~~~ii~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        248 AAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             HHHHHHHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999998765557999988888774349999999999999999999559999999999999999998875

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=2.1e-66  Score=477.40  Aligned_cols=297  Identities=38%  Similarity=0.581  Sum_probs=270.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCC--eEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||| |+||+++|+.|+..++..|++|+|+++  ++|.++||.|+.+..  ..+.. .+.+ +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence            59999999 999999999998888888999999997  799999999997532  34432 2245 58899999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~  175 (332)
                      |.||+|||+|+|++..|.++++++++++.++|||++++++|||+|++||++    ++.+++|++||||. |.||++||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999875    78899999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C-------CCHHHHHHHHHHHhccchhhhhcccCCCchhhHH
Q 020049          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  247 (332)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~  247 (332)
                      ++|++++++|++|+++|+|+||+ ++||+||++++.+ +       .++++++++.++|++++++|+++| |.| +.||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999999 9999999999854 1       234567899999999999999976 444 99999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          248 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       248 a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      |.++++++++|++|++   +++|++ +++|+| ++++|||+|+++|++|+++++++ +|+++|+++|+.|++.|++.++.
T Consensus       231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~  306 (313)
T COG0039         231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIEL  306 (313)
T ss_pred             HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999984   588886 899999 88999999999999999999996 99999999999999999999999


Q ss_pred             hhhhhc
Q 020049          326 GISFSK  331 (332)
Q Consensus       326 ~~~~~~  331 (332)
                      +.++++
T Consensus       307 ~~~~~~  312 (313)
T COG0039         307 VKELVL  312 (313)
T ss_pred             HHHhhc
Confidence            988764

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.5e-63  Score=463.16  Aligned_cols=317  Identities=61%  Similarity=0.956  Sum_probs=281.7

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           14 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        14 ~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ||.--++.||+||||+|.||+++++.|+..+...+|+|+|++.+.++++||.|......+..+....+++++++|||+||
T Consensus         2 ~~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVV   81 (321)
T PTZ00325          2 RPSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVL   81 (321)
T ss_pred             CCcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEE
Confidence            34445677999999989999999999998888889999999558999999999865444443322234468999999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~  173 (332)
                      +++|.|++++++|.+++..|+++++++++.|.+++|+++|+++|||+|++++++.+.+++.+++|++||||++.|||+||
T Consensus        82 itaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~  161 (321)
T PTZ00325         82 ICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRA  161 (321)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988644456889999999999977999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  253 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~  253 (332)
                      ++.+|+++|++|++|+++||||||+.+++|+||.+.  .++++++++++.+++++++++|++.|.|||+++||+|.++++
T Consensus       162 r~~la~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~  239 (321)
T PTZ00325        162 RKFVAEALGMNPYDVNVPVVGGHSGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAE  239 (321)
T ss_pred             HHHHHHHhCcChhheEEEEEeecCCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHH
Confidence            999999999999999999999999845999999993  356677799999999999999999765679999999999999


Q ss_pred             HHHHHHcCCCCCCcEEEeeEEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 020049          254 FADACLRGLRGDAGVVECAFVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  332 (332)
Q Consensus       254 ii~ai~~~~~~~~~v~~~~~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~~  332 (332)
                      ++++|++|..+++.++++++++|+| .+++|+|+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|.++
T Consensus       240 i~~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~  319 (321)
T PTZ00325        240 WSTSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEAAVPDLKKNIEKGLEFARK  319 (321)
T ss_pred             HHHHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998743344688888899999 689999999999999999999833999999999999999999999999999875

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=9.7e-64  Score=465.76  Aligned_cols=286  Identities=27%  Similarity=0.392  Sum_probs=259.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC---CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ||+|||| |+||+++|+.|+.+++.+||+|+|+++  ++|+++||.|....   ..++..  .+| +++++|||+||+|+
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~--~~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIR--AGD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEE--ECC-HHHhCCCCEEEECC
Confidence            7999999 999999999999999999999999988  78999999997532   245544  246 58899999999999


Q ss_pred             CCCCCCCCC--hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           97 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        97 g~~~~~g~~--r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      |.|++||++  |+|++..|+++++++++.+.+++|++++|++|||+|++||++    ++.+|||++||||+ |.||++|+
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999998765    78899999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C---------CCHHHHHHHHHHHhccchhhhhcccCCCch
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  243 (332)
                      ++++|+++|++|++|+++|||+||+ +++|+||++++++ +         ..+..++++.+++++++++|++   +||++
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence            9999999999999999999999999 9999999998753 1         1222478999999999999999   56899


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 020049          244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  321 (332)
Q Consensus       244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~  321 (332)
                      +|++|.++++++++|++|++   .+++++ +++|+| ++++++|+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999875   588875 789999 68999999999999999999996 9999999999999999997


Q ss_pred             HH
Q 020049          322 SI  323 (332)
Q Consensus       322 ~~  323 (332)
                      .+
T Consensus       305 ~~  306 (307)
T cd05290         305 TI  306 (307)
T ss_pred             Hh
Confidence            65

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.6e-62  Score=458.05  Aligned_cols=310  Identities=56%  Similarity=0.880  Sum_probs=277.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+||||+|.+|+++++.|+. .+...+++|+|+++ ..++++|+.|......+..+ ..+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999998865 56677999999987 67788999885322344432 135767999999999999999


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHH
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  178 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la  178 (332)
                      +++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++++.+++++|+|++||||+|.||+.|+++.+|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888899999999999998899999999999


Q ss_pred             HHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHH
Q 020049          179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC  258 (332)
Q Consensus       179 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai  258 (332)
                      +++|++|++|+++||||||+.+++|+||++ -+.++++++++++.+++++++++|++.|.|+|+++||+|.++++++++|
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai  238 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHH
Confidence            999999999999999999666899999999 3345777779999999999999999976677999999999999999999


Q ss_pred             HcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 020049          259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  332 (332)
Q Consensus       259 ~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~~  332 (332)
                      ++++++++.++++++++|+-.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.+++|++|+++
T Consensus       239 ~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        239 VRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             HhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            98865555688887777753468999999999999999999955999999999999999999999999999975

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=1.1e-62  Score=461.07  Aligned_cols=295  Identities=27%  Similarity=0.397  Sum_probs=262.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~   87 (332)
                      +|.||+||||+|+||+++++.|+..++.+     ||+|+|+++    ++|+++||.|..+.  ......  +.+ +++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence            57899999988999999999999999888     999999964    68999999999731  223322  334 69999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~  165 (332)
                      |||+||+|||.|+++|++|.|++..|+++++++++.|.+++| ++++|++|||+|++||++    ++.+ |||++||||+
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  154 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999998 999999999999999875    6778 9999999999


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhhcc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~  237 (332)
                      |.||+.||++++|+++|++|++|+ .+||||||+ +++|+||++++.+ +    ++++.  +++|.+++++++++|++  
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--  231 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE--  231 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh--
Confidence            999999999999999999999995 569999999 9999999998753 1    33333  67999999999999999  


Q ss_pred             cCCCchhh-HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeC-CC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHH
Q 020049          238 AGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIG  311 (332)
Q Consensus       238 ~~kg~~~~-s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~  311 (332)
                       +||+++| ++|.++++++++|++|++. +.+++++ +++| +|  |+++|||+||++|++|++++++ + +|+++|+++
T Consensus       232 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~  308 (323)
T TIGR01759       232 -ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGK  308 (323)
T ss_pred             -ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHH
Confidence             5688999 4779999999999999832 2588887 7899 88  4899999999999999999998 6 999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 020049          312 LEKAKKELAGSIQKG  326 (332)
Q Consensus       312 l~~sa~~l~~~~~~~  326 (332)
                      |+.|++.|+++++++
T Consensus       309 l~~sa~~lk~~~~~~  323 (323)
T TIGR01759       309 LDATEDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998764

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.5e-62  Score=458.99  Aligned_cols=290  Identities=24%  Similarity=0.341  Sum_probs=261.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCe-EEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAV-VRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~-v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||+|||| |.||+++++.|+..++..||+|+|+++  ++|+++||+|+..... .... .++|+ ++++|||+||+++
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence            469999998 999999999999999999999999988  7899999999973221 1222 24575 6799999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~  175 (332)
                      |.|+++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++    ++++|+|++||||+ |.||+.|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998664    78889999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C-----------CCHHHHHHHHHHHhccchhhhhcccCCCch
Q 020049          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (332)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  243 (332)
                      .+|+++++++++|+++|||+||+ +++|+||++++.+ +           .++++++++.+++++++++|++   +||++
T Consensus       156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t  231 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGYT  231 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCCc
Confidence            99999999999999999999999 9999999998753 1           1234588999999999999998   56899


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      +||+|.++++++++|++|++   .+++++ +++|.|  +++++||+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 ~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~  307 (312)
T cd05293         232 SWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLW  307 (312)
T ss_pred             hHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            99999999999999999875   477775 789988  57999999999999999999996 999999999999999999


Q ss_pred             HHHH
Q 020049          321 GSIQ  324 (332)
Q Consensus       321 ~~~~  324 (332)
                      +.++
T Consensus       308 ~~~~  311 (312)
T cd05293         308 EVQK  311 (312)
T ss_pred             HHhh
Confidence            8764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1e-62  Score=433.00  Aligned_cols=288  Identities=23%  Similarity=0.360  Sum_probs=264.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC---CeEEEEeCCCCHHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      +..||+|+|+ |+||.+.|..++.+++..|++|+|.++  ++|++|||+|...+   +++..   ..|+ .+.+++++||
T Consensus        19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~Dy-~~sa~S~lvI   93 (332)
T KOG1495|consen   19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKDY-SVSANSKLVI   93 (332)
T ss_pred             cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCcc-cccCCCcEEE
Confidence            3579999999 999999999999999999999999998  79999999998742   34442   4574 7789999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      +|||..+++|++|++++.+|+.+++.+.+.+-+|.||++++++|||+|+|||+.    ||.+|||++||||. |+||++|
T Consensus        94 iTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaR  169 (332)
T KOG1495|consen   94 ITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSAR  169 (332)
T ss_pred             EecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHH
Confidence            999999999999999999999999999999999999999999999999999864    89999999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCC
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGA  240 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~k  240 (332)
                      |+++++++||++|+++++||+||||+ +.+|.||...+.+            ..+++.|+++.++|.+.+|+|+++   |
T Consensus       170 FryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---K  245 (332)
T KOG1495|consen  170 FRYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---K  245 (332)
T ss_pred             HHHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---c
Confidence            99999999999999999999999999 9999999987632            256678999999999999999995   5


Q ss_pred             CchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 020049          241 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  317 (332)
Q Consensus       241 g~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~  317 (332)
                      |+|+|++|.++++++++|+.|++   ++++++ .++|.|  .+++|||+||++|++|+..++.. +|+++|.++|++||+
T Consensus       246 GyTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~  321 (332)
T KOG1495|consen  246 GYTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAK  321 (332)
T ss_pred             CchHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHH
Confidence            99999999999999999999986   588887 679998  56999999999999999999996 999999999999999


Q ss_pred             HHHHHH
Q 020049          318 ELAGSI  323 (332)
Q Consensus       318 ~l~~~~  323 (332)
                      .|.+..
T Consensus       322 tl~~~q  327 (332)
T KOG1495|consen  322 TLLEAQ  327 (332)
T ss_pred             HHHHHH
Confidence            998544

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=9.3e-62  Score=458.56  Aligned_cols=291  Identities=24%  Similarity=0.367  Sum_probs=262.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +||+|||| |+||+++|+.|+..++..||+|+|+++  ++|+++||.|+... ...... .++| ++.++|||+||+++|
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d-y~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTD-YAVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999999999999988  78999999998632 223332 2356 467999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~  176 (332)
                      .|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++.+|||++||||+ |.||++|+++.
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    67789999999999 79999999999


Q ss_pred             HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +|+++|+++++|+++||||||+ +++|+||.+++.+            .+++++++++.+++++++++|++   +||+++
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence            9999999999999999999999 9999999998632            13334578999999999999999   568999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-C--CccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T--ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~--~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      ||+|.++++++++|++|++   .+++++ +++|+| .  +++|+|+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus       267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~  342 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW  342 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999986   588887 689998 3  7899999999999999999996 999999999999999999


Q ss_pred             HHHHHh
Q 020049          321 GSIQKG  326 (332)
Q Consensus       321 ~~~~~~  326 (332)
                      +.++..
T Consensus       343 ~~~~~~  348 (350)
T PLN02602        343 EVQSQL  348 (350)
T ss_pred             HHHHHh
Confidence            887754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=8.8e-61  Score=448.25  Aligned_cols=291  Identities=24%  Similarity=0.393  Sum_probs=264.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||+|||| |.||+++++.|+..++.+||+|+|+++  ++|+++||.|+... ..+...  +++ +++++|||+||+++
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIita   81 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVITA   81 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEEec
Confidence            469999999 999999999999999999999999988  68999999998632 334443  345 57899999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~  175 (332)
                      |.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++    ++++|+|++||||+ |.||+.|+++
T Consensus        82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~~  157 (315)
T PRK00066         82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFRY  157 (315)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998764    67789999999999 8999999999


Q ss_pred             HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      .+|+++|++|++|+++|||+||+ +++|+||++++++           .+++++++++.++++++++++++   +||+++
T Consensus       158 ~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t~  233 (315)
T PRK00066        158 MLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGATY  233 (315)
T ss_pred             HHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCeeh
Confidence            99999999999999999999999 9999999998743           13446688999999999999999   568999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  322 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~  322 (332)
                      ||+|.++++++++|+++++   .++|++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.
T Consensus       234 ~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~  309 (315)
T PRK00066        234 YGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEI  309 (315)
T ss_pred             HHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999865   588886 789999 78999999999999999999996 99999999999999999999


Q ss_pred             HHHh
Q 020049          323 IQKG  326 (332)
Q Consensus       323 ~~~~  326 (332)
                      ++..
T Consensus       310 ~~~~  313 (315)
T PRK00066        310 MDEA  313 (315)
T ss_pred             HHHh
Confidence            8764

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-61  Score=451.67  Aligned_cols=298  Identities=22%  Similarity=0.301  Sum_probs=262.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCC-C-CeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~-~-~~v~~~~~~~d~~~a~~   87 (332)
                      +|+||+||||+|.||+++++.|+..++++     ||+|+|+++    ++|+++||.|+.. . ..+...  +.+ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            57899999988999999999999988888     999999954    6899999999862 1 233332  334 69999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~  165 (332)
                      |||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++||++    ++.+ |||++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999988 7999999999999999875    5777 9999999999


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCcee-EEEecCCCceeecccCCCCCC----C-CCHHH--HHHHHHHHhccchhhhhcc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----S-FTQEE--TEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~----~-~~~~~--~~~l~~~v~~~~~~i~~~~  237 (332)
                      |.||++||++.+|++++++|++|+++ ||||||+ +++|+||++++++    + +++++  ++++.+++++++++|++  
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--  232 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE--  232 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh--
Confidence            99999999999999999999999986 5899999 9999999999854    1 34433  57899999999999999  


Q ss_pred             cCCCchhhHHHHH-HHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          238 AGAGSATLSMAYA-AVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       238 ~~kg~~~~s~a~a-~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                       +||+++|++|.+ +++++++|++|.+. +.+++++ +++|+|  |++++||+||++| +|+++++...+|+++|+++|+
T Consensus       233 -~kG~t~~~~a~~~~~~iv~ail~~~~~-~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l~L~~~E~~~l~  309 (326)
T PRK05442        233 -ARGASSAASAANAAIDHVRDWVLGTPE-GDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGLEIDDFSREKID  309 (326)
T ss_pred             -CcCCccHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCCCCCHHHHHHHH
Confidence             568999999999 59999999999521 2588886 689999  4899999999999 999999652399999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 020049          314 KAKKELAGSIQKGISF  329 (332)
Q Consensus       314 ~sa~~l~~~~~~~~~~  329 (332)
                      +|++.|+++.+.+..+
T Consensus       310 ~s~~~l~~~~~~~~~~  325 (326)
T PRK05442        310 ATLAELEEERDAVKHL  325 (326)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887654

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=3.3e-61  Score=447.77  Aligned_cols=281  Identities=25%  Similarity=0.425  Sum_probs=254.6

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        25 IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+ |+||+++|+.|+..++.+||+|+|+++  ++|+++||.|+...  ..+...  .+| +++++|||+||+++|.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence            6899 999999999999999999999999988  79999999998642  233432  345 588999999999999999


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHHH
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE  179 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la~  179 (332)
                      ++|++|.|++..|+++++++++.|++++|++++|++|||+|++|+++    ++.+++|++||||+ |.||+.|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998764    77889999999999 89999999999999


Q ss_pred             HhCCCCCCCceeEEEecCCCceeecccCCCCCC-C---C-------CHHHHHHHHHHHhccchhhhhcccCCCchhhHHH
Q 020049          180 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---F-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  248 (332)
Q Consensus       180 ~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~---~-------~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a  248 (332)
                      +++++|++|+++|||+||+ +++|+||++++++ +   +       .+.+++++.+++++++++|++   +||+++|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence            9999999999999999999 9999999998743 1   2       123477999999999999999   5689999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 020049          249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  321 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~  321 (332)
                      .++++++++|++|++   .++|++ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence            999999999999975   588886 889999 57899999999999999999995 9999999999999999973

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.5e-60  Score=445.78  Aligned_cols=294  Identities=28%  Similarity=0.381  Sum_probs=260.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~a   89 (332)
                      .||+||||+|+||+++++.|+..++++     +|+|+|+++    ++++++||.|..+  .......  . +.+++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~-~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--T-DPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--c-ChHHHhCCC
Confidence            489999999999999999999888877     599999985    6889999999852  1223321  2 347999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC-CCCCceEEeeh
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM  167 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~-~~~~kviG~~~  167 (332)
                      |+||++||.|+++|++|.|++..|+++++++++.|.++| |++++|++|||+|++|+++    ++.+| +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999997 9999999999999999764    67888 59999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCCC---------CCHH-HHHHHHHHHhccchhhhhc
Q 020049          168 LDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEA  236 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~---------~~~~-~~~~l~~~v~~~~~~i~~~  236 (332)
                      ||++||++.+|++++++|++| +++||||||+ +++|+||++++.+.         ++++ ..++|.+++++++++|++ 
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~-  231 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK-  231 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh-
Confidence            999999999999999999999 5689999999 99999999987431         2222 257899999999999999 


Q ss_pred             ccCCCchhhH-HHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 020049          237 KAGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  311 (332)
Q Consensus       237 ~~~kg~~~~s-~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~  311 (332)
                        +||+++|+ +|.++++++++|++|++.+ .+++++ +++|+|   |++++||+||+||++|++++.++ +|+++|+++
T Consensus       232 --~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~  307 (323)
T cd00704         232 --KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREK  307 (323)
T ss_pred             --ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHH
Confidence              56889996 6999999999999998643 488996 789998   47999999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q 020049          312 LEKAKKELAGSIQKGI  327 (332)
Q Consensus       312 l~~sa~~l~~~~~~~~  327 (332)
                      |++|+..|+++.+.++
T Consensus       308 l~~s~~~l~~~~~~~~  323 (323)
T cd00704         308 LKATEEELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999999998764

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=5.3e-60  Score=455.34  Aligned_cols=301  Identities=22%  Similarity=0.251  Sum_probs=265.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhh
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENA   85 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~-------~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a   85 (332)
                      ..++.||+||||+|+||+++++.|+..       ++..||+|+|+++  ++|+++||.|+.+  ...+...  +.| +++
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~  173 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEV  173 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHH
Confidence            456789999999999999999999988       6667999999998  7999999999873  1234322  345 689


Q ss_pred             cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh-hCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~-~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      ++|||+||+++|.|+++|++|.|++..|.++++++++.|.+ ++|++++|++|||+|++|+++    ++.++++++|+||
T Consensus       174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViG  249 (444)
T PLN00112        174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFH  249 (444)
T ss_pred             hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEE
Confidence            99999999999999999999999999999999999999999 589999999999999999765    6888999999999


Q ss_pred             e-ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhh
Q 020049          165 V-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVE  235 (332)
Q Consensus       165 ~-~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~  235 (332)
                      + |.||++|+++.||+++|+++++| +++||||||+ ++||+||.+++++ +    +++.+  +++|.+++++++++|++
T Consensus       250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~  328 (444)
T PLN00112        250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK  328 (444)
T ss_pred             eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence            9 99999999999999999999999 5699999999 9999999999853 2    23333  67999999999999998


Q ss_pred             cccCCCchhh-HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeC-CC--CCccEEEEeEEEcCCceEEec-cCCCCCHHHH
Q 020049          236 AKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIF-QLGPLNEYER  309 (332)
Q Consensus       236 ~~~~kg~~~~-s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~-~~~~L~~~E~  309 (332)
                         +||+++| ++|.++++++++|+++.+. +.+++++ +++| +|  +++++||+||++|++|+++++ ++ +|+++|+
T Consensus       329 ---~kG~t~~~s~a~ai~~~I~ail~~~d~-~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~  403 (444)
T PLN00112        329 ---KWGRSSAASTAVSIADAIKSLVTPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR  403 (444)
T ss_pred             ---ccCchhHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence               5677777 9999999999999954442 3588887 7899 48  489999999999999999999 65 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q 020049          310 IGLEKAKKELAGSIQKGISFS  330 (332)
Q Consensus       310 ~~l~~sa~~l~~~~~~~~~~~  330 (332)
                      ++|++|++.|.++.+.+...+
T Consensus       404 ~~l~~Sa~~L~~e~~~~~~~~  424 (444)
T PLN00112        404 ERIKKSEAELLAEKRCVAHLT  424 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998887654

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=6.5e-60  Score=448.69  Aligned_cols=302  Identities=22%  Similarity=0.253  Sum_probs=263.7

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--ccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHh
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMDT--GAVVRGFLGQPQLEN   84 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~--D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~   84 (332)
                      ...+|.||+||||+|+||+++|+.|+..++++     .|+|+  |+++  ++|+++||.|+.+  ...+...  +.+ ++
T Consensus        40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~  116 (387)
T TIGR01757        40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YE  116 (387)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HH
Confidence            34567999999999999999999999999877     57777  6666  7899999999862  1233322  345 68


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      +++|||+||+++|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++.+++|++|+|
T Consensus       117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rvi  192 (387)
T TIGR01757       117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNF  192 (387)
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEE
Confidence            99999999999999999999999999999999999999999988 9999999999999999765    678899999999


Q ss_pred             Ee-ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhh
Q 020049          164 GV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVV  234 (332)
Q Consensus       164 G~-~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~  234 (332)
                      |+ |.||++|+++.||+++++++++| +++||||||+ +++|+||.+++.+ +    +++.+  +++|.+++++++++|+
T Consensus       193 G~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi  271 (387)
T TIGR01757       193 HALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALI  271 (387)
T ss_pred             EecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHH
Confidence            99 99999999999999999999999 5999999999 9999999998753 2    22223  6799999999999999


Q ss_pred             hcccCCCchhh-HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCC-C--CCccEEEEeEEEcCCceEEec-cCCCCCHHH
Q 020049          235 EAKAGAGSATL-SMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIF-QLGPLNEYE  308 (332)
Q Consensus       235 ~~~~~kg~~~~-s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~i~-~~~~L~~~E  308 (332)
                      +   +||++.| ++|.++++++++|+++.+. +.++|++ +++|+ |  +++++||+||++|++|+++++ ++ +|+++|
T Consensus       272 ~---~KG~t~~~s~a~ai~~~i~ai~~g~d~-~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E  346 (387)
T TIGR01757       272 K---KWGRSSAASTAVSIADAIKSLVVPTPE-GDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFL  346 (387)
T ss_pred             h---ccCchhHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHH
Confidence            8   5677777 9999999999999955442 3588886 78996 8  489999999999999999996 75 999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhh
Q 020049          309 RIGLEKAKKELAGSIQKGISFS  330 (332)
Q Consensus       309 ~~~l~~sa~~l~~~~~~~~~~~  330 (332)
                      +++|++|++.|+++.+.+++..
T Consensus       347 ~~~l~~Sa~~L~~e~~~~~~~~  368 (387)
T TIGR01757       347 RERIRKSEDELLKEKECVAHLI  368 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999888754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-59  Score=439.21  Aligned_cols=297  Identities=31%  Similarity=0.499  Sum_probs=265.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +++.++|+.|....  ...+.. .++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEE
Confidence            4579999999 9999999999998886 5899999988  67899999987532  122322 24676 58999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      ++|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|++|+++    ++++++|++||+|+ |.||+.|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998654    67889999999999 59999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCch
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  243 (332)
                      ++.+|+++|++|++|+++|+|+||+ +++|+||.+++++          .+.+++++++.+++++++++|++.+ |||++
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999999 9999999998742          1455668899999999999999975 78999


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 020049          244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  321 (332)
Q Consensus       244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~  321 (332)
                      +||+|.++++++++|++|++   .++|++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|+..|++
T Consensus       234 ~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~  309 (319)
T PTZ00117        234 FFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQE  309 (319)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999875   588887 789999 46899999999999999999996 9999999999999999999


Q ss_pred             HHHHhhhh
Q 020049          322 SIQKGISF  329 (332)
Q Consensus       322 ~~~~~~~~  329 (332)
                      .++....+
T Consensus       310 ~~~~~~~~  317 (319)
T PTZ00117        310 LTQKAKAL  317 (319)
T ss_pred             HHHHHHHh
Confidence            99877654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.6e-59  Score=439.37  Aligned_cols=288  Identities=25%  Similarity=0.396  Sum_probs=259.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||+ |.+|++++..|+..++..+|+|+|+++  +++.++||.|...  .......  ..+ ++++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~-~~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGD-YSDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCC-HHHhCCCCEEEEcc
Confidence            38999999 999999999999999877999999988  6889999988753  1233332  245 46799999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~  175 (332)
                      |.|+++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++    ++++++|++||||+ |.||+.|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998764    67799999999999 8999999999


Q ss_pred             HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCchhh
Q 020049          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  245 (332)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~  245 (332)
                      ++|+++++++++|+++|||+||+ +++|+||++++.+          .+.+++++++.+++++++++|++   +||+++|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence            99999999999999999999999 9999999998743          13345688999999999999999   5689999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          246 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       246 s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      ++|.++++++++|++|++   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~  304 (306)
T cd05291         229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENI  304 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999865   588886 789999 77999999999999999999995 999999999999999999876


Q ss_pred             H
Q 020049          324 Q  324 (332)
Q Consensus       324 ~  324 (332)
                      +
T Consensus       305 ~  305 (306)
T cd05291         305 K  305 (306)
T ss_pred             h
Confidence            5

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=7.7e-59  Score=435.94  Aligned_cols=292  Identities=33%  Similarity=0.580  Sum_probs=261.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +++.++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~   80 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV   80 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence            4579999999 9999999999998887 4699999998  5778999988742  1222332 24675 78999999999


Q ss_pred             cCCCCCCCCC-----ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehh
Q 020049           95 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  168 (332)
Q Consensus        95 ~~g~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~l  168 (332)
                      ++|.|+++|+     +|.+++..|+++++++++.|+++||++|+|++|||+|++++.+    ++++++|++||+|+ |.|
T Consensus        81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l  156 (321)
T PTZ00082         81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL  156 (321)
T ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence            9999999999     9999999999999999999999999999999999999998754    68899999999999 599


Q ss_pred             hHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhccc
Q 020049          169 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA  238 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~  238 (332)
                      |+.|+++.+|+++++++++|+++|+|+||+ +++|+||++++.+          .+++++++++.+++++++++|++.+ 
T Consensus       157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-  234 (321)
T PTZ00082        157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-  234 (321)
T ss_pred             cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence            999999999999999999999999999999 9999999998743          1455668999999999999999975 


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 020049          239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  316 (332)
Q Consensus       239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa  316 (332)
                      |||+++||+|.++++++++|++|++   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|+
T Consensus       235 gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa  310 (321)
T PTZ00082        235 GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESI  310 (321)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHH
Confidence            7899999999999999999999976   588887 789999 57999999999999999999996 99999999999999


Q ss_pred             HHHHHHHH
Q 020049          317 KELAGSIQ  324 (332)
Q Consensus       317 ~~l~~~~~  324 (332)
                      +.|++.++
T Consensus       311 ~~i~~~~~  318 (321)
T PTZ00082        311 KEVKRLEA  318 (321)
T ss_pred             HHHHHHHh
Confidence            99998764

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.9e-59  Score=439.61  Aligned_cols=295  Identities=22%  Similarity=0.310  Sum_probs=262.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~   87 (332)
                      +|+||+||||+|+||+++++.|+..++++     ||+|+|+++    ++|+++||.|+.+.  ..+...  +.+ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            47899999998999999999999999988     999999954    68999999998731  234432  345 69999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~  165 (332)
                      |||+||+|+|.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|++||++    ++.+ ++|++||||+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999999775    5777 5999999999


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCce-eEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhhcc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~  237 (332)
                      |.||++|+++.+|+++|+++++|++ +|||+||+ +++|+||++++.+ +    +.+.+  +++|.+++++++++|++  
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~--  230 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK--  230 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh--
Confidence            9999999999999999999999998 56999999 9999999998743 1    34443  57999999999999999  


Q ss_pred             cCCCchhhHHH-HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          238 AGAGSATLSMA-YAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       238 ~~kg~~~~s~a-~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                       +||+++|++| .++++++++|++|++. ..+++++ +++|+|  |++++||+||++|++|+++++++ +|+++|+++|+
T Consensus       231 -~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~  307 (322)
T cd01338         231 -ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKID  307 (322)
T ss_pred             -CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHH
Confidence             5689999999 5999999999999852 2588886 689999  48999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHh
Q 020049          314 KAKKELAGSIQKG  326 (332)
Q Consensus       314 ~sa~~l~~~~~~~  326 (332)
                      +|++.|+++.+.+
T Consensus       308 ~s~~~l~~~~~~~  320 (322)
T cd01338         308 ATLAELLEEREAV  320 (322)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.8e-59  Score=436.22  Aligned_cols=286  Identities=29%  Similarity=0.428  Sum_probs=258.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |+|||+ |.||+++++.|+..++..+|+|+|+++  +.++++||.|.... ...+... ++| +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            689999 999999999999999888999999988  68999999998643 2223332 356 57899999999999999


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHH
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA  178 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la  178 (332)
                      +++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++++|+|++||||+ |.||+.|+++.+|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998754    78889999999999 7999999999999


Q ss_pred             HHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C------CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHH
Q 020049          179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA  251 (332)
Q Consensus       179 ~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~  251 (332)
                      +++++++++|+++|+|+||+ +++|+||++++++ +      .++..++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence            99999999999999999999 9999999998753 2      1234578999999999999998   5689999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          252 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       252 ~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      ++++++|++|++   .+++++ +++|+| +++++||+||++|++|+++++++ +|+++|+++|++|+++|++.+
T Consensus       230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999999999865   588887 789999 78999999999999999999995 999999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.4e-59  Score=435.21  Aligned_cols=289  Identities=31%  Similarity=0.514  Sum_probs=260.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||+ |.||+.+|+.++..++. +|+|+|+++  ..+.++|+.|...    ..+++   .++|+ +.+++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCH-HHhCCCCEEEE
Confidence            69999999 99999999999998876 899999988  5678888877642    12333   25676 45999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      ++|.|+++|++|.|++..|++++++++++|.+++|++++|++|||+|++|+++    ++.+|+|++||||+ |.||+.|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    78899999999999 59999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  248 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a  248 (332)
                      ++.+|+++++++++|+++||||||+ +++|+||.+++.+ +    ++++.++++.+++++++++|++.+ |||++.||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999999 9999999998754 2    344558999999999999999975 7899999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      .++++++++|++|++   .++|++ +++|+| .+++|+|+||+||++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~~  304 (305)
T TIGR01763       230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCKM  304 (305)
T ss_pred             HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999975   588886 789999 67999999999999999999996 99999999999999999988753

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=5.5e-59  Score=411.22  Aligned_cols=321  Identities=72%  Similarity=1.114  Sum_probs=303.9

Q ss_pred             hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCc
Q 020049           11 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMD   90 (332)
Q Consensus        11 ~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   90 (332)
                      .|+.....+..||+|+||+|.+|+.+..+|+.+++.+++.|||+....|.+.|++|..+...+..+.+...+++++++||
T Consensus        19 ~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~ad   98 (345)
T KOG1494|consen   19 RVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGAD   98 (345)
T ss_pred             ccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCC
Confidence            45666777889999999999999999999999999999999999888999999999998888998877778999999999


Q ss_pred             EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 020049           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~  170 (332)
                      +||+-||+||||||+|+|++..|..++++++..+.++||++.+.++|||++...+++++++++...|+++|++|+|.||.
T Consensus        99 vVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDv  178 (345)
T KOG1494|consen   99 VVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDV  178 (345)
T ss_pred             EEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCC-CCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHH
Q 020049          171 VRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY  249 (332)
Q Consensus       171 ~r~~~~la~~l~v~~-~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~  249 (332)
                      .|.+.++++.++++| ++++++|+|+|.+.+++|++|+..+...++++++++++.+++..|.|+.+.|.|+|+..+|+|+
T Consensus       179 VRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAy  258 (345)
T KOG1494|consen  179 VRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAY  258 (345)
T ss_pred             hhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHH
Confidence            999999999999999 5599999999999999999999998878999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Q 020049          250 AAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF  329 (332)
Q Consensus       250 a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~  329 (332)
                      |.+++..+++++.+++..++.|+|+....-+-.||+.|+++|++|++++..+++|+++|++.|+.+..+|++.+++|++|
T Consensus       259 Aga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv~F  338 (345)
T KOG1494|consen  259 AGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGVTF  338 (345)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999998766788899887765356799999999999999999999999999999999999999999999999


Q ss_pred             hc
Q 020049          330 SK  331 (332)
Q Consensus       330 ~~  331 (332)
                      .+
T Consensus       339 ~~  340 (345)
T KOG1494|consen  339 VK  340 (345)
T ss_pred             Hh
Confidence            86

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.6e-57  Score=425.91  Aligned_cols=288  Identities=28%  Similarity=0.445  Sum_probs=260.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||+|||+ |.||+++++.|+..++..+|+|+|+++  .++.++|+.|.... ......  ++|+ +++++||+||++++
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            69999999 999999999999999878999999988  67899999988531 223333  3464 78999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~  176 (332)
                      .|++++++|.+++..|+++++++++.+++++|+++++++|||+|++|+++    ++.+|||++||||+ |.||+.|+++.
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998765    67789999999999 89999999999


Q ss_pred             HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +|+++++++++|+++|||+||+ +++|+||++++.+            .++++.++++.+++++++++|++   +||+++
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence            9999999999999999999999 9999999998642            23345688999999999999999   568999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  322 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~  322 (332)
                      ||+|.++++++++|++|++   .++|++ +++|+| .+++++|+||+||++|+++++++ +|+++|+++|++|++.|++.
T Consensus       229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~  304 (308)
T cd05292         229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEA  304 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999865   588886 789999 57999999999999999999996 99999999999999999988


Q ss_pred             HH
Q 020049          323 IQ  324 (332)
Q Consensus       323 ~~  324 (332)
                      ++
T Consensus       305 ~~  306 (308)
T cd05292         305 IE  306 (308)
T ss_pred             Hh
Confidence            76

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=3.7e-57  Score=424.51  Aligned_cols=296  Identities=24%  Similarity=0.324  Sum_probs=254.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ||+||||+|.||+++++.|...++..     +|+|+|+++    ++++++||.|+..... ..+..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence            69999999999999999999888764     799999965    5789999999973211 1111233547999999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhH
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  170 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~  170 (332)
                      |++||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|++||++    ++.++++++++||+ |.||+
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999996 9999999999999998765    67787777789999 99999


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCC-C----CC----CHHH--HHHHHHHHhccchhhhhccc
Q 020049          171 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----SF----TQEE--TEYLTNRIQNGGTEVVEAKA  238 (332)
Q Consensus       171 ~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~-~----~~----~~~~--~~~l~~~v~~~~~~i~~~~~  238 (332)
                      +||++.+|++++++|++|+ ++||||||+ +++|+||++++. +    ++    ++++  ++++.+++++++++|++.+ 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999995 699999999 999999999886 4    22    2222  5789999999999999953 


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCC-C--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                       ++++.|++|.++++++++|+++.+ ++.++|++ +++|+ |  |++++||+||++|++|++.+.++ +|+++|+++|++
T Consensus       234 -~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~  310 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLAL  310 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHH
Confidence             358999999999999999995443 23588887 78999 8  47999999999996666666665 999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 020049          315 AKKELAGSIQKGI  327 (332)
Q Consensus       315 sa~~l~~~~~~~~  327 (332)
                      |++.|++.++.++
T Consensus       311 s~~~lk~~~~~~~  323 (324)
T TIGR01758       311 TAKELEEERDEAL  323 (324)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998875

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=2.6e-57  Score=426.21  Aligned_cols=296  Identities=24%  Similarity=0.330  Sum_probs=258.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~   87 (332)
                      +|.||+||||+|++|+++++.|+..++.+     +|+|+|+++    +.++++|+.|...  ...+..   +++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            46899999999999999999999877654     999999965    5788899998752  123332   357779999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHh-CCCCCCceEEe
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV  165 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~-~~~~~~kviG~  165 (332)
                      |||+||++||.+++++++|.+++..|+++++++++.|.+++ |++++|++|||+|++|+++    ++. +++|+++ ||+
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~  152 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA  152 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence            99999999999999999999999999999999999999997 7999999999999999775    566 5777777 888


Q ss_pred             -ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCC----C-C----CCHHH--HHHHHHHHhccchh
Q 020049          166 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----C-S----FTQEE--TEYLTNRIQNGGTE  232 (332)
Q Consensus       166 -~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~----~-~----~~~~~--~~~l~~~v~~~~~~  232 (332)
                       |.||+.|+++.+|+++++++++|+ .+||||||+ +++|+||++++.    + +    +++++  +++|.+++++++++
T Consensus       153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~  231 (325)
T cd01336         153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA  231 (325)
T ss_pred             eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence             999999999999999999999996 559999999 999999999885    3 2    22222  58999999999999


Q ss_pred             hhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHH
Q 020049          233 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYER  309 (332)
Q Consensus       233 i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~  309 (332)
                      |++.+  +|++.||+|.++++++++|++|++. +.+++++ +++|+|  +++++||+||++|++|+++++++ +|+++|+
T Consensus       232 Ii~~~--~g~t~~~~a~~~~~i~~ail~~~~~-~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~  307 (325)
T cd01336         232 VIKAR--KLSSAMSAAKAICDHVHDWWFGTPE-GEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSR  307 (325)
T ss_pred             HHHcc--ccchHHHHHHHHHHHHHHHHcCCCC-CeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHH
Confidence            99953  5799999999999999999998631 2588886 689999  48999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 020049          310 IGLEKAKKELAGSIQKGI  327 (332)
Q Consensus       310 ~~l~~sa~~l~~~~~~~~  327 (332)
                      ++|++|++.|+++++.++
T Consensus       308 ~~l~~s~~~l~~e~~~~~  325 (325)
T cd01336         308 EKIDATAKELVEEKETAL  325 (325)
T ss_pred             HHHHHHHHHHHHHHHhhC
Confidence            999999999999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.1e-55  Score=412.76  Aligned_cols=287  Identities=34%  Similarity=0.579  Sum_probs=256.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |+|||| |+||++++..++..++. +|+|+|+++  +++.++|+.+...  ....+.. .++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCCH-HHhCCCCEEEEecCC
Confidence            689999 99999999999998877 999999988  5677888887642  1222322 24574 779999999999999


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHH
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFV  177 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~l  177 (332)
                      |+++|++|.+.+.+|++++++++++|++++|++++|++|||+|++|+++    ++++++|++||||+ |.||+.|+++.+
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764    67889999999999 589999999999


Q ss_pred             HHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHH
Q 020049          178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV  252 (332)
Q Consensus       178 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~  252 (332)
                      |++|++++++|+++++|+||+ +++|+||++++.+ +    +++++++++.+++++++++|++.+ |||++.|++|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            999999999999999999999 9999999999853 2    345568999999999999999976 77999999999999


Q ss_pred             HHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          253 KFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       253 ~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      +++++|++|++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       231 ~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         231 EMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             HHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            99999999875   588887 789999 56999999999999999999996 999999999999999999765

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=1.5e-55  Score=412.39  Aligned_cols=290  Identities=25%  Similarity=0.426  Sum_probs=257.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|+||+|.+|++++..|+..++..+|+|+|+++    +++.++|+.|...  ....+.. .++| ++++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEE
Confidence            699999988999999999999999888999999954    5788899988642  1122322 2456 467999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++    ++.+++|++|+||+ |.||+.|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    67889999999999 79999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C------CCHHHHHHHHHHHhccchhhhhcccCCCchhhH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  246 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s  246 (332)
                      ++.+|+++++++++|+++|+||||+ +++|+||.+++.+ +      +.+.+++++.+++++++++|++   +||++.||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~---~kg~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIIS---LKGGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---hcCCchhh
Confidence            9999999999999999999999999 9999999998753 1      2244578999999999999999   45788999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          247 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       247 ~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      +|.++++++++|++|++   .+++++ +++|+|  .+++++|+||+||++|+++++++ +|+++|+++|++|+..|++.+
T Consensus       231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~  306 (309)
T cd05294         231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYT  306 (309)
T ss_pred             HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999976   478876 789987  34899999999999999999996 999999999999999999876


Q ss_pred             H
Q 020049          324 Q  324 (332)
Q Consensus       324 ~  324 (332)
                      +
T Consensus       307 ~  307 (309)
T cd05294         307 R  307 (309)
T ss_pred             h
Confidence            5

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=3.1e-55  Score=411.02  Aligned_cols=292  Identities=32%  Similarity=0.564  Sum_probs=260.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ++||+|||| |+||++++..++..++. +|+|+|+++  +++.++|+.|....  ...+.. .++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~-~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKIT-GTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEE-eCCCH-HHHCCCCEEEEC
Confidence            379999999 99999999999998877 999999988  67888888876421  112222 24675 779999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      +|.|+++|++|.+++.+|+++++++++.|++++|++|+|++|||+|++|+++    ++++++|++||||+ |.||+.|++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999998765    67889999999999 699999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHH
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAY  249 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~  249 (332)
                      +.+|++++++|++|+++|+|+||+ +++|+||++++.+ +    ++++.++++.++++++++++++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            999999999999999999999999 9999999998743 2    455557899999999999999864 57899999999


Q ss_pred             HHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          250 AAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       250 a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      ++++++++|+.|++   .+++++ +++|+| .++++||+||+||++|+++++++ +|+++|+++|++|+++|++.++.
T Consensus       232 ~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  305 (307)
T PRK06223        232 SIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA  305 (307)
T ss_pred             HHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999875   478776 789998 67999999999999999999996 99999999999999999988864

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=3.7e-55  Score=407.16  Aligned_cols=272  Identities=22%  Similarity=0.325  Sum_probs=241.4

Q ss_pred             EEEEEccCC----cHHHHHHHhcCCC-C-CeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHH
Q 020049           48 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC  121 (332)
Q Consensus        48 ei~L~D~~~----~~~~~~dl~~~~~-~-~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~  121 (332)
                      .|+|+|+++    ++|+++||.|+.. . ..+..   +++.+++++|||+||++||.|+++|++|.|++..|++++++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999977    6899999999862 1 23332   3454699999999999999999999999999999999999999


Q ss_pred             HHHHhh-CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCC
Q 020049          122 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG  198 (332)
Q Consensus       122 ~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~  198 (332)
                      +.|.++ +|++++|++|||+|++||++    ++.+++|++|+||+ |.||++||++.+|+++++++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999765    67889999999999 99999999999999999999999 7899999999


Q ss_pred             CceeecccCCCC----CC-C----CCHHH--HHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCc
Q 020049          199 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAG  267 (332)
Q Consensus       199 ~~~vp~~s~~~v----~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~  267 (332)
                       +++|+||++++    ++ +    +.+++  .+++.+++++++++|++.+  ||+++||+|.++++++++|+++++ ++.
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             99999999988    43 2    23333  5789999999999999952  689999999999999999999642 235


Q ss_pred             EEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 020049          268 VVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK  331 (332)
Q Consensus       268 v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~  331 (332)
                      +++++ +++|+|  +++++||+||++|++|++.++++ +|+++|+++|++|+..|+++++.+++.|+
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~~~~~~  309 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELAYSCLS  309 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88886 789999  48999999999999999999896 99999999999999999999999998774

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.9e-55  Score=423.47  Aligned_cols=297  Identities=15%  Similarity=0.131  Sum_probs=256.7

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEccC--C--cHHHHHHHhcCCCC--CeEEEEeCCCCHH
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV--N--TPGVTADISHMDTG--AVVRGFLGQPQLE   83 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~-----~ei~L~D~~--~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~   83 (332)
                      ....+|.+|+|+||+|++|+++.+.++....+     -.|+|+|+.  +  ++|+++||.|+.+.  ..+...  +.+ +
T Consensus       118 ~~~~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~  194 (452)
T cd05295         118 RSKINPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-D  194 (452)
T ss_pred             hcCCCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-H
Confidence            34556789999999999999999999986432     379999994  4  78999999999731  234433  234 7


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEecCCCCchHHHHHHHHHHhC-CCCCC
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPK  160 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~  160 (332)
                      ++|+|||+||+++|.|+++|++|.|++..|.++++++++.|.+++|  ++++|+.|||+|++|+++    ++.+ ++|++
T Consensus       195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~  270 (452)
T cd05295         195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRK  270 (452)
T ss_pred             HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHH
Confidence            9999999999999999999999999999999999999999999999  889999999999999875    4555 99999


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC-------------C----CCHHH--HH
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TE  220 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~-------------~----~~~~~--~~  220 (332)
                      ||+|++.++++|++++||+++|+++++| +++||||||+ ++||+||.+++..             +    +.+++  .+
T Consensus       271 rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~  349 (452)
T cd05295         271 NIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWING  349 (452)
T ss_pred             HEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHH
Confidence            9999966889999999999999999999 6799999999 9999999998743             1    22333  35


Q ss_pred             HHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEE
Q 020049          221 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEE  297 (332)
Q Consensus       221 ~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~  297 (332)
                      ++.+.+++++.   .   +||++.||+|.|+++++++|++|++.+ .+++++ +++|+|  |++++||+||++|++|++.
T Consensus       350 ~~~~~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~~-~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~  422 (452)
T cd05295         350 EFVATLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPPG-EIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEV  422 (452)
T ss_pred             HHHHHHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCCC-eEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEE
Confidence            77888888887   2   578999999999999999999998522 588886 789999  5899999999999999999


Q ss_pred             eccCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 020049          298 IFQLGPLNEYERIGLEKAKKELAGSIQKGI  327 (332)
Q Consensus       298 i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~  327 (332)
                      +..+ +|+++|+++|++|+++|+++.+.++
T Consensus       423 V~~L-~L~e~E~~kL~~S~~eL~~E~~~~~  451 (452)
T cd05295         423 VTDL-ELSEILREVLKRITSDLIQEKLVAL  451 (452)
T ss_pred             EeCC-CCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            9996 9999999999999999999987664

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=4.1e-54  Score=401.15  Aligned_cols=270  Identities=21%  Similarity=0.273  Sum_probs=237.2

Q ss_pred             EEEEEccCC----cHHHHHHHhcCCCCCeE--EEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHH
Q 020049           48 VLHLYDVVN----TPGVTADISHMDTGAVV--RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC  121 (332)
Q Consensus        48 ei~L~D~~~----~~~~~~dl~~~~~~~~v--~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~  121 (332)
                      .|+|+|+++    ++|+++||.|+. .+..  ...  ++|++++++|||+||+|||.|+++|++|.|++..|++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~   93 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATG   93 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhc-cccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence            899999977    689999999997 2322  222  4577789999999999999999999999999999999999999


Q ss_pred             HHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHHHHHHhCCCCCCCcee-EEEecCC
Q 020049          122 EGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAG  198 (332)
Q Consensus       122 ~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~  198 (332)
                      +.|.+++| ++++|++|||+|++|+++.   ++.+|+|++ +||+ |.||++||++.+|++++++|++|+.+ ||||||+
T Consensus        94 ~~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~  169 (313)
T TIGR01756        94 EALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE  169 (313)
T ss_pred             HHHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC
Confidence            99999995 5889999999999997641   588999998 9999 99999999999999999999999655 9999999


Q ss_pred             CceeecccCCCC--CC-C------CCHH-HHHHHHHHHhccchhhhhcccCCCchhhHHH-HHHHHHHHHHHcCCCCCCc
Q 020049          199 VTILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMA-YAAVKFADACLRGLRGDAG  267 (332)
Q Consensus       199 ~~~vp~~s~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a-~a~~~ii~ai~~~~~~~~~  267 (332)
                       +++|+||.+++  .+ +      ++++ .++++.+++++++++|++   +||+++|+++ .++++++++|++|++. +.
T Consensus       170 -s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~  244 (313)
T TIGR01756       170 -SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GE  244 (313)
T ss_pred             -ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-Ce
Confidence             99999999988  43 1      2231 367999999999999999   5689999977 6999999999997653 35


Q ss_pred             EEEee-EEe--CCC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020049          268 VVECA-FVA--SQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIGLEKAKKELAGSIQKGISFS  330 (332)
Q Consensus       268 v~~~~-~~~--g~~--~~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~  330 (332)
                      ++|++ +++  |+|  ++++++|+||++|++|++++++ + +|+++|+++|++|+..|+++.+.+++.|
T Consensus       245 i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~~~~~  312 (313)
T TIGR01756       245 VLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETALKAL  312 (313)
T ss_pred             EEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88997 575  388  3799999999999999999999 7 9999999999999999999999998865

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=4.2e-51  Score=375.00  Aligned_cols=254  Identities=29%  Similarity=0.441  Sum_probs=229.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCC--cHHHHHHHhcCCCCC-eEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |+||||+|.+|+++++.|+..+  ...+|+|+|+++  +++.++|+.|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899998999999999999988  677999999988  688999999886432 23333 26688899999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  177 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~l  177 (332)
                      .++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++    ++++|+|++|+||+|.+|+.|+++.+
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    67889999999999559999999999


Q ss_pred             HHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHH
Q 020049          178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA  257 (332)
Q Consensus       178 a~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~a  257 (332)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999999 8999999755                                     67899999999


Q ss_pred             HHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          258 CLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       258 i~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      |++|++   .+++++ +++|+|  +++++||+||++|++|+++++++ +|+++|+++|++|++.++..+
T Consensus       198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999964   577776 789998  58999999999999999999996 999999999999999999765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.1e-46  Score=326.56  Aligned_cols=305  Identities=25%  Similarity=0.342  Sum_probs=271.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-----~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      +|.+|.|.||+|++|+++.+.++...     ....++|+|+..    ++|.+|+|+|+.+ |.++....++|..++|+|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~-PlL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCAL-PLLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhh-hHHHhhhcccChhhhhccC
Confidence            46799999999999999999997642     234899999987    6899999999985 6555444477889999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehh
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~l  168 (332)
                      |+.|+.++.|+++||+|.|++..|.++++.-+..+++|+ |+.+|+++.||++..+.++.   +.++.+|.+++-++|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999999 79999999999999987763   56788999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCC---------CCCHHHH--HHHHHHHhccchhhhhc
Q 020049          169 DVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVEA  236 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~---------~~~~~~~--~~l~~~v~~~~~~i~~~  236 (332)
                      |.+|+..++|.++|++.++| +..+||+|+. +++|+..+++++.         ..+|+.|  .++.+.|++||.-+++.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            99999999999999999999 8999999999 9999999998842         1456666  58999999999999986


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEeeEEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          237 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       237 ~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                      +  |.++.+|.|.+++++++.|+.+++...++...++.+|.|  |++..||+||++ ++|-|++++..+++++-++++..
T Consensus       238 r--k~SSA~SaA~aacDhi~dw~~gTpeG~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~~  314 (332)
T KOG1496|consen  238 R--KLSSAMSAAKAACDHIRDWWFGTPEGTFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMDL  314 (332)
T ss_pred             h--hhhhhhhHHHhHhhhhhheecCCCCccEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhhh
Confidence            4  568899999999999999999998665443335899999  889999999999 78999999888999999999999


Q ss_pred             HHHHHHHHHHHhhhhhc
Q 020049          315 AKKELAGSIQKGISFSK  331 (332)
Q Consensus       315 sa~~l~~~~~~~~~~~~  331 (332)
                      ++++|.++.+.+++.++
T Consensus       315 t~~EL~eEkd~a~~~l~  331 (332)
T KOG1496|consen  315 TAKELKEEKDLAYSCLS  331 (332)
T ss_pred             hHHHHHHhHHHHHHhhc
Confidence            99999999999998875

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=2.5e-33  Score=241.79  Aligned_cols=159  Identities=35%  Similarity=0.552  Sum_probs=144.6

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCC-----------CCCCHHHHHHHHHHHhccchhhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV  234 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~-----------~~~~~~~~~~l~~~v~~~~~~i~  234 (332)
                      |.||++|+++++|+++|++|++++++|||+||+ ++||+||++++.           ..+++++++++.+++++++++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 999999999874           23667788999999999999999


Q ss_pred             hcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCc--cEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 020049          235 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TEL--PFFASKVRLGRQGAEEIFQLGPLNEYERI  310 (332)
Q Consensus       235 ~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~--~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~  310 (332)
                      +.|.  |+++||+|.++++++++|++|++   .+++++ +++|+| .++  +|||+||++|++|++++++.++|+++|++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            9652  89999999999999999999985   588886 789999 334  99999999999999999983499999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 020049          311 GLEKAKKELAGSIQKGISFS  330 (332)
Q Consensus       311 ~l~~sa~~l~~~~~~~~~~~  330 (332)
                      +|++|++.|++.++.+++|+
T Consensus       155 ~l~~sa~~l~~~i~~~~~f~  174 (174)
T PF02866_consen  155 KLKESAKELKKEIEKGLEFV  174 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999985

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=100.00  E-value=2.7e-31  Score=257.49  Aligned_cols=284  Identities=22%  Similarity=0.207  Sum_probs=193.1

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhCC--C-CcEEEEEccCC-cH----HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcE
Q 020049           21 FKVAILGAAGGIGQ-PLAMLMKINP--L-VSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~-~~a~~l~~~~--~-~~ei~L~D~~~-~~----~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      |||+|||| |+.-. .+...|+...  + .+||+|+|+++ ..    ..+..+.+.. ...++... |+|+++|++||||
T Consensus         1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~gADf   77 (425)
T cd05197           1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIIDADF   77 (425)
T ss_pred             CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCCE
Confidence            69999999 85411 1334444443  3 58999999998 22    2233333332 33455433 7899999999999


Q ss_pred             EEEcCCC------------CCCCCC---C-----hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 020049           92 VIIPAGV------------PRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        92 Vi~~~g~------------~~~~g~---~-----r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~  151 (332)
                      ||.+..+            |.++|.   +     ......+|+++++++++.|+++||+||+|++|||+|++|+++    
T Consensus        78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~----  153 (425)
T cd05197          78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV----  153 (425)
T ss_pred             EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence            9998432            234432   1     355678999999999999999999999999999999998764    


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCCCceeecccCCCC--------------------
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKP--------------------  210 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~~~~vp~~s~~~v--------------------  210 (332)
                      ++.  +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| ||+.     .||..++                    
T Consensus       154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~~~~  225 (425)
T cd05197         154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKSKDW  225 (425)
T ss_pred             HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccCccc
Confidence            565  378899999876 7899999999999999999999999 9974     2221110                    


Q ss_pred             ------------------------CCC------CCH----H-------------H---H-HHHHHHHhccc--hhhhhcc
Q 020049          211 ------------------------PCS------FTQ----E-------------E---T-EYLTNRIQNGG--TEVVEAK  237 (332)
Q Consensus       211 ------------------------~~~------~~~----~-------------~---~-~~l~~~v~~~~--~~i~~~~  237 (332)
                                              +.+      +.+    +             .   + +++.+..+...  ...-+. 
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~-  304 (425)
T cd05197         226 KTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVEL-  304 (425)
T ss_pred             cccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhhh-
Confidence                                    000      000    0             0   0 01111111100  000000 


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       238 ~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                      ..++...|+  ..+++++++|.+|++.   ++.++ .++|.+   |++.++++||+++++|+.++.. ++|++..+++++
T Consensus       305 ~~r~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~~Li~  378 (425)
T cd05197         305 IKRGGRKYS--EAAIPLIRALLNDNGA---RFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVKGLLR  378 (425)
T ss_pred             hhcCCcccH--HHHHHHHHHHHcCCCe---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHHHHHH
Confidence            011233344  7899999999999863   44444 678886   7899999999999999999876 699998888777


Q ss_pred             HHHHHHHHHHHHh
Q 020049          314 KAKKELAGSIQKG  326 (332)
Q Consensus       314 ~sa~~l~~~~~~~  326 (332)
                      .-...-+-.++.+
T Consensus       379 ~~~~~e~l~veAa  391 (425)
T cd05197         379 QRKMRERLALEAF  391 (425)
T ss_pred             HHHHHHHHHHHHH
Confidence            7555544444444

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.98  E-value=4.9e-31  Score=256.50  Aligned_cols=288  Identities=17%  Similarity=0.142  Sum_probs=195.8

Q ss_pred             CeEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEccCC--cH-HHHHHHhcCC--CCCeEEEEeCCCCHHhhcCCCcE
Q 020049           21 FKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMD--TGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~--~l~-~~~~~-~ei~L~D~~~--~~-~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      +||+|||| |++|++.+.  .++ ..++. .+|+|+|+++  ++ +... +.+..  .....+.. .++|++++++||||
T Consensus         2 ~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dADf   78 (431)
T PRK15076          2 PKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGADY   78 (431)
T ss_pred             cEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCCE
Confidence            69999999 999988876  665 33443 4999999988  22 2222 33221  12233332 26788899999999


Q ss_pred             EEEcCCCC-CCCC--------------CChhhh--------HhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 020049           92 VIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (332)
Q Consensus        92 Vi~~~g~~-~~~g--------------~~r~~~--------~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~  148 (332)
                      ||++++.+ .+++              ++|.+.        +.+|++++++++++|+++||+||+|++|||+|++|+.+ 
T Consensus        79 Vv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~-  157 (431)
T PRK15076         79 VINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM-  157 (431)
T ss_pred             EeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-
Confidence            99999876 3434              455566        89999999999999999999999999999999998653 


Q ss_pred             HHHHHhCCCCCCceEEee--hhhHHHHHHHHHHHhCCCCCCCceeEEEecCC----------CceeecccC---C-----
Q 020049          149 EVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQ---V-----  208 (332)
Q Consensus       149 ~~~~~~~~~~~~kviG~~--~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~s~---~-----  208 (332)
                         +   ++|+.||||+|  .+++.   +.+|+.+|+++++|++++.|-++-          ++.+|....   .     
T Consensus       158 ---~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~~~~  228 (431)
T PRK15076        158 ---N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQTRC  228 (431)
T ss_pred             ---h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccCchh
Confidence               3   57889999997  45553   899999999999999999993333          133332110   0     


Q ss_pred             --CCC-----------C-----------CC----CHHHHHHHHH----HHh------ccchhhh-hcccCCCc--hhhHH
Q 020049          209 --KPP-----------C-----------SF----TQEETEYLTN----RIQ------NGGTEVV-EAKAGAGS--ATLSM  247 (332)
Q Consensus       209 --~v~-----------~-----------~~----~~~~~~~l~~----~v~------~~~~~i~-~~~~~kg~--~~~s~  247 (332)
                        .++           .           .+    .++..+++..    ..+      ....+.. +...++..  ..|  
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  306 (431)
T PRK15076        229 QDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELANAERIEIKRS--  306 (431)
T ss_pred             cccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhCCCccccccc--
Confidence              010           0           01    2222222211    000      1111111 11111100  123  


Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          248 AYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       248 a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      +..+++++++|.+|++.   ++.++ .++|.+   |+|.++++||.|+++|+.++.. ++|++..+++++.-...-+-.+
T Consensus       307 ~e~a~~ii~ai~~~~~~---~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~-g~lP~~~~~l~~~~~~~e~l~v  382 (431)
T PRK15076        307 REYASTIIEAIETGEPS---VIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKV-GDLPPQLAALNRTNINVQELTV  382 (431)
T ss_pred             hHHHHHHHHHHhcCCce---EEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeec-CCCCHHHHHHHHHHHHHHHHHH
Confidence            47899999999998762   44444 678886   8899999999999999999877 6999999998877665555555


Q ss_pred             HHhh
Q 020049          324 QKGI  327 (332)
Q Consensus       324 ~~~~  327 (332)
                      +.++
T Consensus       383 eAa~  386 (431)
T PRK15076        383 EAAL  386 (431)
T ss_pred             HHHH
Confidence            5443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.98  E-value=1.9e-30  Score=251.14  Aligned_cols=289  Identities=19%  Similarity=0.210  Sum_probs=194.4

Q ss_pred             CeEEEEcCCCchHHH-HHHHHHhC-C-C-CcEEEEEccC-C--cH---HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCc
Q 020049           21 FKVAILGAAGGIGQP-LAMLMKIN-P-L-VSVLHLYDVV-N--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMD   90 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~-~a~~l~~~-~-~-~~ei~L~D~~-~--~~---~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   90 (332)
                      |||+|||| |++... +...|+.. . + .++|+|+|++ +  +.   ..+.++.+.. .+.++.. .|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~-~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVH-LTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEE-EeCCHHHHhCCCC
Confidence            69999999 865332 34455543 2 3 5899999999 5  21   1223333322 2344443 2679999999999


Q ss_pred             EEEEcCCCCCCCCCCh--------------------hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHH
Q 020049           91 LVIIPAGVPRKPGMTR--------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r--------------------~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                      |||++++.+..++.++                    .....+|+++++++++.|+++||+||+|++|||++++|+.+   
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~---  154 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV---  154 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence            9999987665444433                    23478999999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCC---------Cceeec----------------
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILPL----------------  204 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~----------------  204 (332)
                       ++.+   +.||||+|+.+ .|+++.+|+.+|+++++++++++| ||..         ++.+|.                
T Consensus       155 -~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~~  229 (419)
T cd05296         155 -LRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGLL  229 (419)
T ss_pred             -HHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhccccccccc
Confidence             5654   67999999875 799999999999999999999999 7765         234441                


Q ss_pred             ccCC------CCCCC------CCHHHH--------------H----HHHHHHhccch-hhhhcccCCCchhhHHHHHHHH
Q 020049          205 LSQV------KPPCS------FTQEET--------------E----YLTNRIQNGGT-EVVEAKAGAGSATLSMAYAAVK  253 (332)
Q Consensus       205 ~s~~------~v~~~------~~~~~~--------------~----~l~~~v~~~~~-~i~~~~~~kg~~~~s~a~a~~~  253 (332)
                      |+..      .+++.      +.++..              +    ++.+..+.... ...+....++...||  ..+++
T Consensus       230 ~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~~  307 (419)
T cd05296         230 FGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAALA  307 (419)
T ss_pred             hHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHHH
Confidence            1100      00110      111111              1    11111111100 000000012333455  78899


Q ss_pred             HHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 020049          254 FADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  326 (332)
Q Consensus       254 ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~  326 (332)
                      ++++|.+|++.   .+.+ +.++|.+   |++.++++||.++++|+.++.. ++|++..+++++.-...=+-.++.+
T Consensus       308 ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~v-g~lP~~~~~l~~~~~~~e~l~veAa  380 (419)
T cd05296         308 LISAIYNDKGD---IHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLPV-GPLPPAILGLIQQVKAYERLTIEAA  380 (419)
T ss_pred             HHHHHhcCCCc---EEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccC-CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998763   4444 4678886   7899999999999999999866 6999998888766544443344433

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.98  E-value=3.8e-32  Score=226.23  Aligned_cols=139  Identities=38%  Similarity=0.602  Sum_probs=123.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+||||+|.||+++++.|+..++.+||+|+|+++  ++|+++|++|..............+ +++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            699999999999999999999999999999999997  7999999999864332222111334 6899999999999999


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |+++|++|.+++..|.++++++++.+.+++|+++++++|||+|++|++    +++.+++|++|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~----~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYV----AQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHH----HHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHH----HHHhhCcCcccCcC
Confidence            999999999999999999999999999999999999999999999765    47889999999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.97  E-value=1.6e-29  Score=245.48  Aligned_cols=293  Identities=18%  Similarity=0.219  Sum_probs=193.7

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhC--CC-CcEEEEEccCC-cH----HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcE
Q 020049           21 FKVAILGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVN-TP----GVTADISHMDTGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~-~~a~~l~~~--~~-~~ei~L~D~~~-~~----~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      |||+|||| |+.-+ .+...|++.  .+ .++|+|+|+++ ..    ..+..+.+.. ...++... |+|+++|++||||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gADf   77 (437)
T cd05298           1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDADF   77 (437)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCCE
Confidence            69999999 75421 234455544  23 58999999998 22    2233333322 23455443 6899999999999


Q ss_pred             EEEcCCC------------CCCCCC---C-----hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 020049           92 VIIPAGV------------PRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        92 Vi~~~g~------------~~~~g~---~-----r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~  151 (332)
                      ||.+..+            |.++|.   +     ......||++++.++++.|+++||+||+|++|||++++|+.+    
T Consensus        78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~----  153 (437)
T cd05298          78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL----  153 (437)
T ss_pred             EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence            9998432            334442   2     345678999999999999999999999999999999998654    


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCC----------Cceeeccc----C---------
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG----------VTILPLLS----Q---------  207 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~----------~~~vp~~s----~---------  207 (332)
                      ++.  +|+.||||+|+.... +...+|+.+|+++++++..+.| ||..          ++.+|...    .         
T Consensus       154 ~~~--~~~~kviGlC~~~~~-~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~~  230 (437)
T cd05298         154 RRL--FPNARILNICDMPIA-IMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDSD  230 (437)
T ss_pred             HHH--CCCCCEEEECCcHHH-HHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCccccc
Confidence            554  788899999987754 7889999999999999999999 3222          13343211    0         


Q ss_pred             -C---C-------------------CCCC-----C-CHH--------------HHHHHHHHHhccchhhhhcccCCCchh
Q 020049          208 -V---K-------------------PPCS-----F-TQE--------------ETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       208 -~---~-------------------v~~~-----~-~~~--------------~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                       .   .                   ++++     + .++              .+++..+++.+...+......-+....
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~  310 (437)
T cd05298         231 EEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGSTF  310 (437)
T ss_pred             ccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhhh
Confidence             0   0                   1110     0 111              011111111100000000000000011


Q ss_pred             h--HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHH
Q 020049          245 L--SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE  318 (332)
Q Consensus       245 ~--s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~  318 (332)
                      .  ..|.++++++++|++|++   .+++++ .++|.|   ++|+++|+||+||++|+.++.. ++|++...++++.-...
T Consensus       311 ~~~~ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l~~~~~~~  386 (437)
T cd05298         311 HVDVHGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGLMEQQVAY  386 (437)
T ss_pred             hccchHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHHHHHHHHH
Confidence            0  135889999999999976   477776 678887   6799999999999999999876 69999999887776655


Q ss_pred             HHHHHHHhh
Q 020049          319 LAGSIQKGI  327 (332)
Q Consensus       319 l~~~~~~~~  327 (332)
                      -+-.++.++
T Consensus       387 e~l~veAa~  395 (437)
T cd05298         387 EKLLVEAYL  395 (437)
T ss_pred             HHHHHHHHH
Confidence            555554443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.2e-28  Score=231.76  Aligned_cols=293  Identities=20%  Similarity=0.247  Sum_probs=194.5

Q ss_pred             CCCeEEEEcCCCchHHHH--HHHHHhCC--CCcEEEEEccCC-cHH----HHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPL--AMLMKINP--LVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~--a~~l~~~~--~~~ei~L~D~~~-~~~----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      +..||+|||| |+++.+-  .-.|.+.+  ...+|+|+|+++ ...    .+..+.+.. .+.++... ++|+++||+||
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA   78 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA   78 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence            4579999999 9777553  22444443  357999999998 222    233343333 23355543 67999999999


Q ss_pred             cEEEEcCC------------CCCCCCCC--------hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 020049           90 DLVIIPAG------------VPRKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  149 (332)
Q Consensus        90 DiVi~~~g------------~~~~~g~~--------r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~  149 (332)
                      |||+.+..            .|.++|..        ......|+++++.+|++.|+++||+||++++|||+.++|..   
T Consensus        79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeA---  155 (442)
T COG1486          79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEA---  155 (442)
T ss_pred             CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHH---
Confidence            99999842            24555532        23445799999999999999999999999999999999754   


Q ss_pred             HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCC-CCCceeEEE-ecCC---------Cceeecc-------------
Q 020049          150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-GHAG---------VTILPLL-------------  205 (332)
Q Consensus       150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~-~~v~~~v~G-~hg~---------~~~vp~~-------------  205 (332)
                       +.+.  +|..|++|+|+... -....+|+.||+++ ++++..+.| +|..         .+.+|.+             
T Consensus       156 -v~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~  231 (442)
T COG1486         156 -VRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSEP  231 (442)
T ss_pred             -HHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCcc
Confidence             4554  45449999998764 36899999999975 999999999 3332         1222211             


Q ss_pred             ----------cCCC----C---CCC------CCHHH----HHHH------HHHHhccchhhhhc------------ccCC
Q 020049          206 ----------SQVK----P---PCS------FTQEE----TEYL------TNRIQNGGTEVVEA------------KAGA  240 (332)
Q Consensus       206 ----------s~~~----v---~~~------~~~~~----~~~l------~~~v~~~~~~i~~~------------~~~k  240 (332)
                                ....    +   +++      ++..-    ..++      .+.++++..+.++.            ...+
T Consensus       232 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~~  311 (442)
T COG1486         232 ENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEKR  311 (442)
T ss_pred             ccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhhc
Confidence                      1000    0   000      00000    0000      01111111111111            0112


Q ss_pred             Cch--hhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          241 GSA--TLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       241 g~~--~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                      +.+  .|+  .+++++++||++|++.   ++.+ +.++|.+   |+|.++++||.++++|+.++.. ++|++.-+++++.
T Consensus       312 ~~~~~~~~--e~a~~ii~Ai~~~~~~---~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~-g~lP~~~~~l~~~  385 (442)
T COG1486         312 IGAGKYSS--EYASNIINAIENNKPS---RIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAV-GDLPEFVKGLMHT  385 (442)
T ss_pred             CCcccccH--HHHHHHHHHHhcCCce---EEEEEcCCCccccCCCCCeEEEeeEEecCCCCccccc-CCCCHHHHHHHHH
Confidence            222  444  7889999999999873   4444 4688986   8899999999999999999877 7999999999988


Q ss_pred             HHHHHHHHHHHhh
Q 020049          315 AKKELAGSIQKGI  327 (332)
Q Consensus       315 sa~~l~~~~~~~~  327 (332)
                      ....-+-.++.++
T Consensus       386 ~i~~e~l~veA~~  398 (442)
T COG1486         386 NINVEELTVEAAL  398 (442)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776665555443

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.96  E-value=4.2e-27  Score=229.21  Aligned_cols=289  Identities=17%  Similarity=0.127  Sum_probs=195.3

Q ss_pred             CeEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEccCC--cHHHHHHHhcCC--CCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~--~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      +||+|||| |++|++.+.  .++.. .. ..+|+|+|+++  ++....++.+..  .....+.. .++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence            58999999 999999776  45433 33 34999999998  344444433321  11223322 267889999999999


Q ss_pred             EEcCCCCCCCCCCh----------------------hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHH
Q 020049           93 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        93 i~~~g~~~~~g~~r----------------------~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                      |++++.+..++.++                      .....+|++++.++++.+.++||++|++++|||++++|+++   
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~---  155 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL---  155 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence            99987554443332                      45667899999999999999999999999999999998654   


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEEecCC----------CceeecccC-----------CC
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQ-----------VK  209 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~s~-----------~~  209 (332)
                       ++.++   .|++|+|+. +.++++.+|+.+|+++++|+++++|-++-          ++.+|....           ..
T Consensus       156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~~~  230 (423)
T cd05297         156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQLS  230 (423)
T ss_pred             -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchhcc
Confidence             67654   699999865 67899999999999999999999993332          234442111           11


Q ss_pred             -CC-----------C-------C------CCHHHHHH------------------HHHHHhccchhhhhc--ccCCCchh
Q 020049          210 -PP-----------C-------S------FTQEETEY------------------LTNRIQNGGTEVVEA--KAGAGSAT  244 (332)
Q Consensus       210 -v~-----------~-------~------~~~~~~~~------------------l~~~v~~~~~~i~~~--~~~kg~~~  244 (332)
                       ++           .       .      ..++....                  +........  ..+.  ....+...
T Consensus       231 ~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  308 (423)
T cd05297         231 PVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPVKR  308 (423)
T ss_pred             cchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccccc
Confidence             10           0       0      01111111                  111111000  0000  00011222


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      |+  ..+++++++|.+|++   .++.++ .++|.+   |++.++++||.|+++|+.++.. ++|++..+++++.-...-+
T Consensus       309 ~~--e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~e~  382 (423)
T cd05297         309 SG--EYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINVQE  382 (423)
T ss_pred             ch--HHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHHHH
Confidence            33  678999999999876   345444 678886   7899999999999999999877 6999999988877666555


Q ss_pred             HHHHHhh
Q 020049          321 GSIQKGI  327 (332)
Q Consensus       321 ~~~~~~~  327 (332)
                      -.++.++
T Consensus       383 l~veA~~  389 (423)
T cd05297         383 LAVEAAL  389 (423)
T ss_pred             HHHHHHH
Confidence            5554443

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.86  E-value=4e-21  Score=165.08  Aligned_cols=151  Identities=22%  Similarity=0.245  Sum_probs=106.2

Q ss_pred             eEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEccCCc-----HHHHHHHhcCC-CCCeEEEEeCCCCHHhhcCCCcE
Q 020049           22 KVAILGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVNT-----PGVTADISHMD-TGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a--~~l~~~~-~-~~ei~L~D~~~~-----~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      ||+|||| |++-.+..  ..+...+ + .++|+|+|+++.     ...+..+.... ...++..   |+|+++|++||||
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADf   76 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADF   76 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCE
Confidence            8999999 87776642  3444443 2 469999999981     12333333322 2334443   6799999999999


Q ss_pred             EEEcCCC------------CCCCCCC----------hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 020049           92 VIIPAGV------------PRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  149 (332)
Q Consensus        92 Vi~~~g~------------~~~~g~~----------r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~  149 (332)
                      ||++...            |.+.|..          ......|+++++.++++.|+++|||||+||+|||+.++|..+  
T Consensus        77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--  154 (183)
T PF02056_consen   77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--  154 (183)
T ss_dssp             EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH--
T ss_pred             EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH--
Confidence            9998543            5555532          345678999999999999999999999999999999997544  


Q ss_pred             HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCC
Q 020049          150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL  183 (332)
Q Consensus       150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v  183 (332)
                        .+.  +|..|++|+|+... -....+|+.||+
T Consensus       155 --~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~  183 (183)
T PF02056_consen  155 --SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM  183 (183)
T ss_dssp             --HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred             --HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence              454  35579999998775 478899999874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.12  E-value=2.6e-09  Score=100.97  Aligned_cols=115  Identities=17%  Similarity=0.242  Sum_probs=85.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHH-------------HHHhc-CCCCCeEEEEeCCCCHHhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-------------ADISH-MDTGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-------------~dl~~-~~~~~~v~~~~~~~d~~~a~   86 (332)
                      |||+|+|. |+||...+.+|++.|+  +|+++|+++.+-..             .+|.. .....+++.   |+|+++|+
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            79999999 9999999999999998  99999998721111             12222 111234664   67999999


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe--cCCCCchHHHH
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA  147 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~--tNP~~~~t~~~  147 (332)
                      +++|+++++.|+|.++..      ..++..+...++.|.++.+...+|+.  |-|++....+-
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            999999999999987733      33477888888888888876444444  79998876553

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.01  E-value=9.4e-10  Score=95.32  Aligned_cols=118  Identities=25%  Similarity=0.370  Sum_probs=77.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-H--HHHHH----HhcCC-C--------CCeEEEEeCCCCHH
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-P--GVTAD----ISHMD-T--------GAVVRGFLGQPQLE   83 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~--~~~~d----l~~~~-~--------~~~v~~~~~~~d~~   83 (332)
                      ||+|||| |.+|..+|..++..|+  +|+|+|.++  . .  ....+    +.+.. .        ..+++.   ++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence            7999999 9999999999999998  999999987  1 1  11111    11111 1        234554   45776


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      ++ .+||+||.+.              .+++++.+++..++++++ |++  |++||.......   +.. .... .++|+
T Consensus        75 ~~-~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSsl~i~---~la-~~~~-~p~R~  132 (180)
T PF02737_consen   75 EA-VDADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSSLSIS---ELA-AALS-RPERF  132 (180)
T ss_dssp             GG-CTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SSS-HH---HHH-TTSS-TGGGE
T ss_pred             HH-hhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCCCCHH---HHH-hccC-cCceE
Confidence            65 4999999995              678999999999999999 577  458887765542   222 2233 35678


Q ss_pred             EEeeh
Q 020049          163 LGVTM  167 (332)
Q Consensus       163 iG~~~  167 (332)
                      +|+-.
T Consensus       133 ig~Hf  137 (180)
T PF02737_consen  133 IGMHF  137 (180)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            88753

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.00  E-value=2.3e-09  Score=99.52  Aligned_cols=122  Identities=23%  Similarity=0.312  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHH--H----HHHhcCC--C----CCeEEEEeCCCCHHh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--T----ADISHMD--T----GAVVRGFLGQPQLEN   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~--~----~dl~~~~--~----~~~v~~~~~~~d~~~   84 (332)
                      .+||+|||| |.||+.+|..++..|+  +|+++|+++   .++.  .    ..+....  .    ...+..+..++++ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999999 9999999999999778  999999986   1211  1    1111111  0    1112223235565 5


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      ++++||+||..+              .+|+++.+++..++++++ |++  |++||.+.+...-++    ..+. .|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia----~~~~-rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELA----EALK-RPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHH----HHhC-CchhEE
Confidence            899999999995              889999999999999999 688  559999987653332    2222 346787


Q ss_pred             Eee
Q 020049          164 GVT  166 (332)
Q Consensus       164 G~~  166 (332)
                      |+.
T Consensus       138 G~H  140 (307)
T COG1250         138 GLH  140 (307)
T ss_pred             EEe
Confidence            773

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.84  E-value=4.5e-08  Score=92.11  Aligned_cols=118  Identities=16%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHH-----H---HHhcCC-----CCCeEEEEeCCCCHHhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT-----A---DISHMD-----TGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~-----~---dl~~~~-----~~~~v~~~~~~~d~~~a~   86 (332)
                      .||+|||+ |.||+.+|..++..|+  +|+++|+++ .....     .   .+....     ...++..   ++++++++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~av   81 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEACV   81 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHHh
Confidence            58999999 9999999999999999  999999986 11110     0   111111     0123343   45788999


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ++||+|+.++              .+|+++.+++...+.+++| ++  |+.||.+.....   +. ..... .|+|++|+
T Consensus        82 ~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a--IlaSnTS~l~~s---~l-a~~~~-~p~R~~g~  140 (321)
T PRK07066         82 ADADFIQESA--------------PEREALKLELHERISRAAKPDA--IIASSTSGLLPT---DF-YARAT-HPERCVVG  140 (321)
T ss_pred             cCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe--EEEECCCccCHH---HH-HHhcC-CcccEEEE
Confidence            9999999995              6789999999999999996 55  668888876542   22 22222 23577775

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.82  E-value=6.2e-08  Score=100.59  Aligned_cols=134  Identities=17%  Similarity=0.196  Sum_probs=93.1

Q ss_pred             hhHHhhhhhccCC------CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHH--HHH----HhcCC-
Q 020049            5 SCLRQAKCRAKGG------AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TAD----ISHMD-   68 (332)
Q Consensus         5 ~~~~~~~~~~~~~------~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~d----l~~~~-   68 (332)
                      .||-+..+.+...      .+..||+|||| |.||..+|..++..|+  +|+|+|+++ .  ++.  +.+    +.+.. 
T Consensus       292 ~ff~~r~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~  368 (714)
T TIGR02437       292 LFLNDQYVKGKAKKADKIAKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGR  368 (714)
T ss_pred             HHhhhHhhcCCCCCCCCCccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4666666654431      23368999999 9999999999999998  999999987 1  221  111    11111 


Q ss_pred             C--------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 020049           69 T--------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP  139 (332)
Q Consensus        69 ~--------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP  139 (332)
                      .        ..+++.   ++|+ +++++||+||.++              .+++++.+++..++++++| ++  |++||.
T Consensus       369 ~~~~~~~~~~~~i~~---~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnT  428 (714)
T TIGR02437       369 ITPAKMAGVLNGITP---TLSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNT  428 (714)
T ss_pred             CChhhHHHHHhCeEE---eCCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECC
Confidence            0        123443   4575 7799999999995              7889999999999999995 66  559999


Q ss_pred             CCchHHHHHHHHHHhCCCCCCceEEee
Q 020049          140 VNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus       140 ~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      +.+-..-+   . .... .|+|++|+.
T Consensus       429 S~l~i~~i---a-~~~~-~p~r~ig~H  450 (714)
T TIGR02437       429 STISISLL---A-KALK-RPENFCGMH  450 (714)
T ss_pred             CCCCHHHH---H-hhcC-CcccEEEEe
Confidence            88664322   2 2233 356788874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.81  E-value=6.1e-08  Score=100.88  Aligned_cols=133  Identities=17%  Similarity=0.194  Sum_probs=93.1

Q ss_pred             hhHHhhhhhccCC----CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHH--HHH----HhcCC-C-
Q 020049            5 SCLRQAKCRAKGG----AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TAD----ISHMD-T-   69 (332)
Q Consensus         5 ~~~~~~~~~~~~~----~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~--~~d----l~~~~-~-   69 (332)
                      .||-+..+.+...    .+..||+|||| |.||+.+|..++..|+  +|+|+|+++   .++.  ..+    +.... . 
T Consensus       316 ~f~~~~~~~~~~~~~~~~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~  392 (737)
T TIGR02441       316 LFHGQTDCKKNKFGKPQRPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKIT  392 (737)
T ss_pred             HHHHHHHccCCCCCCCCCcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            5677777765531    23368999999 9999999999999998  999999987   1221  111    11111 0 


Q ss_pred             -------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 020049           70 -------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN  141 (332)
Q Consensus        70 -------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~  141 (332)
                             ..+++.   ++|+ +++++||+||.++              .+|+++.+++..++++++| ++  |++||.+.
T Consensus       393 ~~~~~~~~~~i~~---~~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSs  452 (737)
T TIGR02441       393 SLERDSILSNLTP---TLDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSA  452 (737)
T ss_pred             HHHHHHHHhCeEE---eCCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCC
Confidence                   124443   4576 6899999999995              7889999999999999995 66  45899988


Q ss_pred             chHHHHHHHHHHhCCCCCCceEEe
Q 020049          142 STVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus       142 ~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      +-..-++    ..... |+|++|+
T Consensus       453 l~i~~la----~~~~~-p~r~ig~  471 (737)
T TIGR02441       453 LPIKDIA----AVSSR-PEKVIGM  471 (737)
T ss_pred             CCHHHHH----hhcCC-ccceEEE
Confidence            6643222    22333 4678776

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.80  E-value=7.4e-08  Score=100.13  Aligned_cols=133  Identities=17%  Similarity=0.202  Sum_probs=91.4

Q ss_pred             hhHHhhhhhccCC------CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHH--HH----HHhcCC-
Q 020049            5 SCLRQAKCRAKGG------AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA----DISHMD-   68 (332)
Q Consensus         5 ~~~~~~~~~~~~~------~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~--~~----dl~~~~-   68 (332)
                      .||.+..+.+...      .+..||+|||| |.||..+|..++..|+  +|+|+|+++  + ++.  ..    .+.... 
T Consensus       292 aF~~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~  368 (715)
T PRK11730        292 IFLNDQYVKGKAKKLAKDAKPVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGK  368 (715)
T ss_pred             HHHHHHHhcCCCCCCCCCccccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3555555644321      12358999999 9999999999999999  999999987  1 211  11    111111 


Q ss_pred             C--------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 020049           69 T--------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP  139 (332)
Q Consensus        69 ~--------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP  139 (332)
                      .        ..+++.   ++|+ +++++||+||.++              .+++++.+++..++++++| ++  |++||.
T Consensus       369 ~~~~~~~~~~~~i~~---~~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNT  428 (715)
T PRK11730        369 IDGAKMAGVLSSIRP---TLDY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNT  428 (715)
T ss_pred             CChhhHHHHHhCeEE---eCCH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcC
Confidence            0        123443   4576 7799999999995              7889999999999999995 66  559999


Q ss_pred             CCchHHHHHHHHHHhCCCCCCceEEe
Q 020049          140 VNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus       140 ~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      +.+-..-+   . ..... |.|++|+
T Consensus       429 Ssl~i~~l---a-~~~~~-p~r~~g~  449 (715)
T PRK11730        429 STISISLL---A-KALKR-PENFCGM  449 (715)
T ss_pred             CCCCHHHH---H-hhcCC-CccEEEE
Confidence            88654322   2 22333 4678886

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.80  E-value=1.8e-08  Score=87.60  Aligned_cols=133  Identities=18%  Similarity=0.235  Sum_probs=79.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC----------------CCCCeEEEEeCCCCHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----------------DTGAVVRGFLGQPQLEN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----------------~~~~~v~~~~~~~d~~~   84 (332)
                      |||+|||. |++|..+|..|+..|+  +|+.+|+++.+  +..+...                ....+++.   ++|.++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~--v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEK--VEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHH--HHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHH--HHHHhhccccccccchhhhhccccccccchh---hhhhhh
Confidence            79999999 9999999999999998  99999998721  1111111                01345665   457888


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      ++++||++|++.++|...+.      .-++..+.+.++.|.++.. +.+|++- |-|.+..-.++...+.+.++..  .=
T Consensus        73 ai~~adv~~I~VpTP~~~~~------~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~--~~  144 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDG------SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKK--ED  144 (185)
T ss_dssp             HHHH-SEEEE----EBETTT------SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTT--TC
T ss_pred             hhhccceEEEecCCCccccC------CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccc--cC
Confidence            89999999999998876543      2235556666666666653 4444433 6888887645555566665433  33


Q ss_pred             EEeehhh
Q 020049          163 LGVTMLD  169 (332)
Q Consensus       163 iG~~~ld  169 (332)
                      ++++..+
T Consensus       145 f~la~~P  151 (185)
T PF03721_consen  145 FHLAYSP  151 (185)
T ss_dssp             EEEEE--
T ss_pred             CeEEECC
Confidence            4554433

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.76  E-value=1e-07  Score=98.91  Aligned_cols=134  Identities=18%  Similarity=0.262  Sum_probs=89.6

Q ss_pred             hhHHhhhhhcc-----CCCCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCC-c--HHH--HH----HHhcC-C
Q 020049            5 SCLRQAKCRAK-----GGAAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TA----DISHM-D   68 (332)
Q Consensus         5 ~~~~~~~~~~~-----~~~~~~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~--~~~--~~----dl~~~-~   68 (332)
                      .||.+..+.+.     +..+..||+|||| |.||+.+|..++ ..|+  +|+|+|.++ .  ++.  ..    .+... .
T Consensus       284 ~f~~~~~~~~~~~~~~~~~~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~  360 (699)
T TIGR02440       284 IFFATTEMKKETGSDATPAKIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRH  360 (699)
T ss_pred             HHHHHHHhcCCCCCCCCcccccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            35555555333     1112358999999 999999999888 4788  999999987 1  111  11    11111 1


Q ss_pred             -C-------CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCC
Q 020049           69 -T-------GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNP  139 (332)
Q Consensus        69 -~-------~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP  139 (332)
                       .       ..++..   ++|+ +++++||+||.++              .+++++.+++..+++++++ ++  |++||.
T Consensus       361 ~~~~~~~~~~~~i~~---~~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnT  420 (699)
T TIGR02440       361 MTPAERDNQMALITG---TTDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNT  420 (699)
T ss_pred             CCHHHHHHHHcCeEE---eCCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCC
Confidence             0       123443   4676 6899999999995              7789999999999999995 66  558999


Q ss_pred             CCchHHHHHHHHHHhCCCCCCceEEee
Q 020049          140 VNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus       140 ~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      ......-++    .... .|+|++|+.
T Consensus       421 S~l~i~~la----~~~~-~p~r~~g~H  442 (699)
T TIGR02440       421 SSLPIGQIA----AAAS-RPENVIGLH  442 (699)
T ss_pred             CCCCHHHHH----HhcC-CcccEEEEe
Confidence            886543222    2222 346787763

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.76  E-value=1.7e-07  Score=87.11  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=81.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHH--HH----HHhcCCC---------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMDT---------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~----dl~~~~~---------~~~v~~~~~~~d~   82 (332)
                      .||+|||+ |.+|..+|..++..|+  +|+++|+++ .  .+.  ..    .+.+...         ..+++.   ++|+
T Consensus         6 ~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~~   79 (286)
T PRK07819          6 QRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTDL   79 (286)
T ss_pred             cEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCCH
Confidence            48999999 9999999999999998  999999987 1  111  11    1111110         123333   4576


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-C-CcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                       +++++||+||.++              .++.++.+++...+++++ + ++  |++||........+    ...... +.
T Consensus        80 -~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~l----a~~~~~-~~  137 (286)
T PRK07819         80 -GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKL----AAATKR-PG  137 (286)
T ss_pred             -HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH----HhhcCC-Cc
Confidence             7799999999995              778999999999999997 4 66  44777776554322    233333 45


Q ss_pred             ceEEee
Q 020049          161 KLLGVT  166 (332)
Q Consensus       161 kviG~~  166 (332)
                      |++|+.
T Consensus       138 r~~g~h  143 (286)
T PRK07819        138 RVLGLH  143 (286)
T ss_pred             cEEEEe
Confidence            677764

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.74  E-value=1e-07  Score=99.00  Aligned_cols=119  Identities=19%  Similarity=0.301  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCC-c--HH--HHHH----HhcC-C-C-------CCeEEEEeCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTAD----ISHM-D-T-------GAVVRGFLGQP   80 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~--~~--~~~d----l~~~-~-~-------~~~v~~~~~~~   80 (332)
                      -.||+|||| |.||..+|..++ ..|+  +|+|+|.++ .  ++  ...+    +... . .       ..+++.   ++
T Consensus       309 i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~  382 (708)
T PRK11154        309 VNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---TT  382 (708)
T ss_pred             ccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---eC
Confidence            368999999 999999999998 7788  999999986 1  21  1111    1111 1 0       124443   45


Q ss_pred             CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      |+ +++++||+||.++              .+|+++.+++..++++++ |++  |++||...+...-++    ..... +
T Consensus       383 ~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la----~~~~~-p  440 (708)
T PRK11154        383 DY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIA----AAAAR-P  440 (708)
T ss_pred             Ch-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----HhcCc-c
Confidence            76 7899999999995              788999999999999999 577  458999886653222    22233 4


Q ss_pred             CceEEee
Q 020049          160 KKLLGVT  166 (332)
Q Consensus       160 ~kviG~~  166 (332)
                      .|++|+.
T Consensus       441 ~r~ig~H  447 (708)
T PRK11154        441 EQVIGLH  447 (708)
T ss_pred             cceEEEe
Confidence            5787773

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.65  E-value=3.3e-07  Score=85.20  Aligned_cols=121  Identities=21%  Similarity=0.306  Sum_probs=78.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHH----HHhc-----CCC---------CCeEEEEeCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISH-----MDT---------GAVVRGFLGQP   80 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~----dl~~-----~~~---------~~~v~~~~~~~   80 (332)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++ ....+.    .+.+     ...         ..++..   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            358999999 9999999999999888  999999986 111111    1100     000         123333   45


Q ss_pred             CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      |+++++++||+||++.              .++.+..+++.+++.+++++.. |+++|.......   +. ...... +.
T Consensus        77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~---~~-~~~~~~-~~  136 (287)
T PRK08293         77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPS---QF-AEATGR-PE  136 (287)
T ss_pred             CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHH---HH-HhhcCC-cc
Confidence            7778899999999995              4557888888899998886432 335666654331   22 222222 45


Q ss_pred             ceEEee
Q 020049          161 KLLGVT  166 (332)
Q Consensus       161 kviG~~  166 (332)
                      |++|+.
T Consensus       137 r~vg~H  142 (287)
T PRK08293        137 KFLALH  142 (287)
T ss_pred             cEEEEc
Confidence            677763

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.63  E-value=4.4e-08  Score=85.77  Aligned_cols=120  Identities=21%  Similarity=0.337  Sum_probs=86.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c-----HHHHHHHhcCC----C-------------CCeEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD----T-------------GAVVRGF   76 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-----~~~~~dl~~~~----~-------------~~~v~~~   76 (332)
                      ...|+|+|| |.+|+.+|+..+..|+  .|+|+|.++ .     ++....+.+..    .             ..+++  
T Consensus        11 ~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~--   85 (298)
T KOG2304|consen   11 IKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK--   85 (298)
T ss_pred             ccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH--
Confidence            357999999 9999999999999999  999999998 1     22222222111    0             01222  


Q ss_pred             eCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        77 ~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       .++|.+.++.+||+||.+              +.+|+.+.+++.+.+++.|+ ++  |..||.....-.   .. ....
T Consensus        86 -~~tnv~~~v~dadliiEA--------------ivEn~diK~~lF~~l~~~ak~~~--il~tNTSSl~lt---~i-a~~~  144 (298)
T KOG2304|consen   86 -TSTNVSDAVSDADLIIEA--------------IVENLDIKRKLFKDLDKIAKSST--ILATNTSSLSLT---DI-ASAT  144 (298)
T ss_pred             -HcCCHHHhhhhhHHHHHH--------------HHHhHHHHHHHHHHHHhhcccce--EEeecccceeHH---HH-Hhhc
Confidence             246888999999999988              48999999999999999996 55  558998875532   11 1222


Q ss_pred             CCCCCceEEee
Q 020049          156 TYDPKKLLGVT  166 (332)
Q Consensus       156 ~~~~~kviG~~  166 (332)
                       -.+.++.|+.
T Consensus       145 -~~~srf~GlH  154 (298)
T KOG2304|consen  145 -QRPSRFAGLH  154 (298)
T ss_pred             -cChhhhceee
Confidence             2456888884

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.56  E-value=7.3e-07  Score=88.27  Aligned_cols=120  Identities=15%  Similarity=0.166  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC---------------CCCCeEEEEeCCCCHHh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---------------DTGAVVRGFLGQPQLEN   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~---------------~~~~~v~~~~~~~d~~~   84 (332)
                      +|||+|||+ |+||..+|..|+..|...+|+.+|+++.+  +..+...               .....+..   |+|+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~   74 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK   74 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence            479999999 99999999999998654499999998721  1111111               00112333   467778


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe--cCCCCchHHH
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPI  146 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~--tNP~~~~t~~  146 (332)
                      ++++||++|++.++|...+....+ -.-++..+.+.++.|.++.++..+|+.  |.|.+..-.+
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~  137 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI  137 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence            899999999999999754221001 023466778888888888765444333  6888876544

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.54  E-value=1.6e-06  Score=80.29  Aligned_cols=118  Identities=20%  Similarity=0.353  Sum_probs=79.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHH--H----HHHhcCC-C--------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--T----ADISHMD-T--------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~--~----~dl~~~~-~--------~~~v~~~~~~~d~   82 (332)
                      +||+|||+ |.||..++..++..|+  +|+++|+++.   ++.  .    .++.... .        ..+++.   ++|+
T Consensus         4 ~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~~   77 (282)
T PRK05808          4 QKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTDL   77 (282)
T ss_pred             cEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            58999999 9999999999999988  9999999872   111  0    1121111 0        113443   4565


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                       +++++||+||+++              .++.....++.+.+.++++ ++++  .||..++-...+    ....+. +.|
T Consensus        78 -~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~r  135 (282)
T PRK05808         78 -DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PDK  135 (282)
T ss_pred             -HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Ccc
Confidence             5689999999995              5567888899999999885 5543  677777554322    233333 357


Q ss_pred             eEEee
Q 020049          162 LLGVT  166 (332)
Q Consensus       162 viG~~  166 (332)
                      ++|+.
T Consensus       136 ~ig~h  140 (282)
T PRK05808        136 VIGMH  140 (282)
T ss_pred             eEEee
Confidence            77764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.52  E-value=2.3e-06  Score=76.45  Aligned_cols=100  Identities=20%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||++|.+|++++..|...++  +|.++|+++  ......++.+..    ....+..   + +..++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEE
Confidence            6899998449999999999998887  999999876  222223222211    1112221   2 33688999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                      +..                ...+.++++.+....++.+||-++||...
T Consensus        75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            952                12233444445444445677778999875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.50  E-value=5.1e-07  Score=76.40  Aligned_cols=94  Identities=23%  Similarity=0.324  Sum_probs=64.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--C------CCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T------GAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~------~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ||+|+|| |..|.++|..|..+++  +|.|+++++.......-.+..  .      ...+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            7999999 9999999999999997  999999976221122122221  1      123433   568999999999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~t  137 (332)
                      ++.  |              ....+++++++..+.+ +..+++++
T Consensus        75 iav--P--------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAV--P--------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             ecc--c--------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            984  2              3446788888888874 44555543

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.50  E-value=1.6e-06  Score=80.73  Aligned_cols=118  Identities=14%  Similarity=0.211  Sum_probs=76.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHH-H----------HhcCCC---------CCeEEEEeCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA-D----------ISHMDT---------GAVVRGFLGQ   79 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~-d----------l~~~~~---------~~~v~~~~~~   79 (332)
                      .||+|||+ |.+|..++..++..|+  +|+++|+++ ....+. .          +.+...         ..++..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999999 9999999999999998  999999987 111111 1          111110         012232   3


Q ss_pred             CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      +++ +++++||+||++.              ..+.+..+++.+.+.++++ ++++  +||.......-+    ..... .
T Consensus        78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l----a~~~~-~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI----ATALE-R  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH----HhhcC-C
Confidence            465 6789999999995              4456777888888988885 5543  566665543221    12222 2


Q ss_pred             CCceEEee
Q 020049          159 PKKLLGVT  166 (332)
Q Consensus       159 ~~kviG~~  166 (332)
                      +.|++|+.
T Consensus       136 ~~r~ig~h  143 (291)
T PRK06035        136 KDRFIGMH  143 (291)
T ss_pred             cccEEEEe
Confidence            45777774

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.47  E-value=5.3e-08  Score=89.79  Aligned_cols=120  Identities=20%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEE----EEeC----CCCHHhhcC--CCc
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR----GFLG----QPQLENALT--GMD   90 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~----~~~~----~~d~~~a~~--~aD   90 (332)
                      |.|+||+|++|+.++..|+..++ .+|+++|.++  ......++.......+++    ...+    ...+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999998875 4899999998  444555553111111121    1111    112456778  999


Q ss_pred             EEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec----CCCCch
Q 020049           91 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST  143 (332)
Q Consensus        91 iVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t----NP~~~~  143 (332)
                      +|+++|....-+-  ....+.+..|+-..+++++...++.-+..|.+.|    ||+++|
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm  138 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM  138 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence            9999998654332  2456778999999999999999988777666664    666665

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.44  E-value=2e-06  Score=85.88  Aligned_cols=104  Identities=22%  Similarity=0.301  Sum_probs=74.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHH--H----HHHhcCCC---------CCeEEEEeCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMDT---------GAVVRGFLGQP   80 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~--~----~dl~~~~~---------~~~v~~~~~~~   80 (332)
                      +..||+|||+ |.||+.+|..++..|+  +|+++|+++  + ++.  .    ..+.....         ..++..   ++
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence            3468999999 9999999999999998  999999987  1 111  1    11211110         123443   45


Q ss_pred             CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 020049           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                      ++ +++++||+||.+.              .++..+.+.+...+.+++|... |++||.+.+-.
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i  125 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSI  125 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCH
Confidence            66 5689999999994              6778899999999999996442 45788877654

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.42  E-value=1.4e-06  Score=80.76  Aligned_cols=108  Identities=18%  Similarity=0.266  Sum_probs=75.4

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcCCCcEEEEcCCCCCCC
Q 020049           24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVPRKP  102 (332)
Q Consensus        24 ~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVi~~~g~~~~~  102 (332)
                      .|+||+|++|++++..|++.|...+|..+|+........++........+. .+....++.++++++|+||++|+...-.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            489999999999999999998555999999876222212222222110112 1222356789999999999998754333


Q ss_pred             C-CChhhhHhhhHHHHHHHHHHHHhhCCCc
Q 020049          103 G-MTRDDLFNINAGIVRTLCEGIAKCCPNA  131 (332)
Q Consensus       103 g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a  131 (332)
                      + .....+..-|+...+++.+...+..-+.
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkr  110 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKR  110 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence            3 4566678899999999999999775443

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.42  E-value=4.4e-06  Score=82.53  Aligned_cols=123  Identities=20%  Similarity=0.253  Sum_probs=90.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC----CCCHHhhcCC--CcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~--aDi   91 (332)
                      .+.|.|+||+|++|+.++..++..++ .+|+++|.+|  ......++.+.....+++.+.+    ..-.+.++++  .|+
T Consensus       250 gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~  328 (588)
T COG1086         250 GKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDI  328 (588)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCce
Confidence            35799999999999999998888755 4999999998  3444455554311223332211    2235678899  999


Q ss_pred             EEEcCCCCCCCCC--ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec----CCCCch
Q 020049           92 VIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNST  143 (332)
Q Consensus        92 Vi~~~g~~~~~g~--~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t----NP~~~~  143 (332)
                      |+++|...+-|-.  ...+-+..|+-..+++++...++.-+..|.+.|    ||+++|
T Consensus       329 VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm  386 (588)
T COG1086         329 VFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM  386 (588)
T ss_pred             EEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence            9999988776654  356778999999999999999888677666665    666655

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.42  E-value=2.6e-06  Score=83.91  Aligned_cols=170  Identities=11%  Similarity=-0.023  Sum_probs=99.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||.|+||+|++|++++..|+..|+  +|+.+|...  .......+.   ....+..+.. .-+..++.++|+||++|
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~---~~~~~~~~~~-Di~~~~~~~~D~ViHlA  192 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLF---GNPRFELIRH-DVVEPILLEVDQIYHLA  192 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhc---cCCceEEEEC-ccccccccCCCEEEECc
Confidence            358999999999999999999999888  999999753  111111111   1123332221 11234578999999998


Q ss_pred             CCCC--CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH--HHHHHHHHHh-CCCCCCceEEeehhhH
Q 020049           97 GVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV--PIAAEVFKKA-GTYDPKKLLGVTMLDV  170 (332)
Q Consensus        97 g~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t--~~~~~~~~~~-~~~~~~kviG~~~ld~  170 (332)
                      +...  ....+..+++..|+....++++.+++...  .+|++|. -+....  ....|-.+.. .-+.+...+|.+.+..
T Consensus       193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~a  270 (436)
T PLN02166        193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTA  270 (436)
T ss_pred             eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHH
Confidence            7532  22234566778999999999999988753  5555533 111000  0000000000 0012234577776666


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          171 VRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       171 ~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      +++...+++..+++..-++ ..++|.+
T Consensus       271 E~~~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        271 ETLAMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             HHHHHHHHHHhCCCeEEEEEccccCCC
Confidence            6666666666666543332 3467754

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.40  E-value=2.6e-06  Score=85.29  Aligned_cols=118  Identities=21%  Similarity=0.285  Sum_probs=78.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHH--HHH----HhcCCC---------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TAD----ISHMDT---------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~--~~d----l~~~~~---------~~~v~~~~~~~d~   82 (332)
                      .||+|||+ |.||..+|..++..|+  +|+++|+++.   ++.  ..+    +.....         ..++..   ++++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~~   81 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEAL   81 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCCH
Confidence            58999999 9999999999999998  9999999871   111  111    111110         123443   3465


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                       +++++||+||.+.              .++..+.+.+...+++.+ |+++  ++||...+-..-+    ...... ++|
T Consensus        82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ai--lasntStl~i~~l----a~~~~~-p~r  139 (507)
T PRK08268         82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCI--LATNTSSLSITAI----AAALKH-PER  139 (507)
T ss_pred             -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcE--EEECCCCCCHHHH----HhhcCC-ccc
Confidence             5689999999994              677888899989999998 4663  3566665443211    222222 456


Q ss_pred             eEEee
Q 020049          162 LLGVT  166 (332)
Q Consensus       162 viG~~  166 (332)
                      ++|+.
T Consensus       140 ~~G~h  144 (507)
T PRK08268        140 VAGLH  144 (507)
T ss_pred             EEEEe
Confidence            77764

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.39  E-value=6.9e-06  Score=76.51  Aligned_cols=101  Identities=22%  Similarity=0.263  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHH----HH----hcCCC--------CCeEEEEeCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTA----DI----SHMDT--------GAVVRGFLGQPQ   81 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~----dl----~~~~~--------~~~v~~~~~~~d   81 (332)
                      .+||+|||+ |.+|..+|..|+..|+  +|+++|+++.  .....    .+    .....        ..++..   +++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            468999999 9999999999999998  9999999861  11111    11    01110        022343   346


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 020049           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  143 (332)
Q Consensus        82 ~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~  143 (332)
                      + +++++||+||++.              .++....+.+.+.+.++++ ++++  +||.+.+-
T Consensus        78 ~-~~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~  123 (292)
T PRK07530         78 L-EDLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS  123 (292)
T ss_pred             H-HHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC
Confidence            5 5689999999994              3345666677778888874 6644  35555544

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.37  E-value=8.3e-06  Score=77.77  Aligned_cols=173  Identities=14%  Similarity=0.045  Sum_probs=102.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhc-C--CCCCeEEEEeCC----CCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-M--DTGAVVRGFLGQ----PQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~-~--~~~~~v~~~~~~----~d~~~a~~~a   89 (332)
                      +++||.|+||+|++|++++..|+..++  +|+.+|....  .....++.. .  .....+..+.+.    .++.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            457999999999999999999999887  9999997541  111111110 0  001123322211    1344567999


Q ss_pred             cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEee
Q 020049           90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus        90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      |+||++|+....+  ..........|+....++.+.+++.... .+|.+|.. +.....  ........-..+...+|.+
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~--~~~~~e~~~~~p~~~Y~~s  168 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHP--DLPKIEERIGRPLSPYAVT  168 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCC--CCCCCCCCCCCCCChhhHH
Confidence            9999998764322  2334556788999999999999877544 34444321 100000  0000011112234567877


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .+...++...+++..+++...++ +.++|.+
T Consensus       169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        169 KYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            66666666666777777765553 5677864

>PLN02427 UDP-apiose/xylose synthase

Probab=98.31  E-value=5.7e-06  Score=79.94  Aligned_cols=114  Identities=18%  Similarity=0.117  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCC---CCCeEEEEe----CCCCHHhhcCCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMD---TGAVVRGFL----GQPQLENALTGM   89 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~---~~~~v~~~~----~~~d~~~a~~~a   89 (332)
                      .++|||.|+||+|++|++++..|+.. ++  +|+.+|.+...  ...+....   ....+..+.    ...++.++++++
T Consensus        12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~--~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427         12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDK--IKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchh--hhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            35689999999999999999999987 46  89999975421  11111110   011233221    122456778899


Q ss_pred             cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |+||++|+.....  .....+.+..|+....++.+..++..  ..+|.+|
T Consensus        88 d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~S  135 (386)
T PLN02427         88 DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFS  135 (386)
T ss_pred             CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence            9999999864321  12234556778888888888887654  3555554

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.30  E-value=5.5e-06  Score=77.03  Aligned_cols=99  Identities=20%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHH---HHH-----hcCCC--------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT---ADI-----SHMDT--------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~---~dl-----~~~~~--------~~~v~~~~~~~d~   82 (332)
                      .||+|||+ |.+|..+|..|+..|+  +|+++|+++.  ....   .++     .....        ...+..   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999999 9999999999999988  9999999871  1111   111     01000        112332   3467


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN  141 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~  141 (332)
                      ++++++||+||++.              .++..+.+.+...+.++++ ++++  ++|...
T Consensus        76 ~~~~~~aD~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~il--~~~tSt  119 (288)
T PRK09260         76 KAAVADADLVIEAV--------------PEKLELKKAVFETADAHAPAECYI--ATNTST  119 (288)
T ss_pred             HHhhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence            78999999999995              3345666677777888875 5543  344443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.30  E-value=9.1e-06  Score=76.33  Aligned_cols=101  Identities=24%  Similarity=0.317  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHh---c---C-C----CCCeEEEEeCCCCHHhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS---H---M-D----TGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~---~---~-~----~~~~v~~~~~~~d~~~a~~   87 (332)
                      +||+|||+ |.+|+.++..|+..|+  +|+++|.++.  ......+.   .   . .    ....+..   ++++.++++
T Consensus         5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~   78 (311)
T PRK06130          5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAVS   78 (311)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHhc
Confidence            58999999 9999999999998888  9999999771  11111110   0   0 0    0011332   346677899


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  143 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~  143 (332)
                      +||+||++.              .........+...+..+++ +.+  +.||...+.
T Consensus        79 ~aDlVi~av--------------~~~~~~~~~v~~~l~~~~~~~~i--i~s~tsg~~  119 (311)
T PRK06130         79 GADLVIEAV--------------PEKLELKRDVFARLDGLCDPDTI--FATNTSGLP  119 (311)
T ss_pred             cCCEEEEec--------------cCcHHHHHHHHHHHHHhCCCCcE--EEECCCCCC
Confidence            999999994              2334556666777777765 443  345555544

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.29  E-value=1.7e-05  Score=74.53  Aligned_cols=102  Identities=25%  Similarity=0.283  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHH--------HHhcCCC---------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~--------dl~~~~~---------~~~v~~~~~~~d~   82 (332)
                      +||+|||+ |.+|++++..|+..|+  +|+++|.++. .....        .+.....         ..++..   ++++
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~~   76 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDSL   76 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECcH
Confidence            58999999 9999999999999998  9999999861 11110        1222111         112333   3577


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  143 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~  143 (332)
                      .+++++||+|+++.              ..+....+.+...+.+.+++..++ .||.....
T Consensus        77 ~~a~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~  122 (308)
T PRK06129         77 ADAVADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSALL  122 (308)
T ss_pred             HHhhCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCCC
Confidence            78899999999985              333556666777787777655444 45544433

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.28  E-value=8.7e-06  Score=81.44  Aligned_cols=104  Identities=14%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHH--------Hh---cCCC--CCeEEEEeCCCCHHhh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMDT--GAVVRGFLGQPQLENA   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~d--------l~---~~~~--~~~v~~~~~~~d~~~a   85 (332)
                      .+||+|||+ |.||+.+|..|+..|+  +|+++|+++.. ....+        +.   ....  ..++..   ++++.++
T Consensus         4 i~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea   77 (495)
T PRK07531          4 IMKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEA   77 (495)
T ss_pred             cCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHH
Confidence            368999999 9999999999999998  99999998721 11111        11   0000  012332   3467788


Q ss_pred             cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 020049           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                      +++||+|+++.              .++..+.+.+...+.++++... |+.||..++..
T Consensus        78 ~~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         78 VAGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             hcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            99999999984              4556777777778888886442 45677766554

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.27  E-value=1.3e-05  Score=74.71  Aligned_cols=100  Identities=21%  Similarity=0.295  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHH--------HHHhcCCC---------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT---------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~--------~dl~~~~~---------~~~v~~~~~~~d~   82 (332)
                      +||+|||+ |.||+.+|..|+..|+  +|+++|.++.. ...        .++.....         ...+..   +++.
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~   78 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTNL   78 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCCH
Confidence            58999999 9999999999999887  99999998611 111        11221110         011222   3454


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  143 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~  143 (332)
                       +++++||+||++.              .++......+...+.++++ +++|  +||...+-
T Consensus        79 -~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~  123 (295)
T PLN02545         79 -EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS  123 (295)
T ss_pred             -HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence             6789999999995              5557777788888888774 5543  46655543

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.24  E-value=2.5e-05  Score=74.02  Aligned_cols=175  Identities=17%  Similarity=0.083  Sum_probs=99.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe----CCCCHHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiVi   93 (332)
                      +.++|.|+||+|++|++++..|+..|+  +|++++++. ......++........+..+.    ...++.++++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            356899999999999999999999888  887776654 222211121111011222221    1123556788999999


Q ss_pred             EcCCCCCCCCCC-hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCch------HHHHHHH------HHHhCCCCC
Q 020049           94 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNST------VPIAAEV------FKKAGTYDP  159 (332)
Q Consensus        94 ~~~g~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~------t~~~~~~------~~~~~~~~~  159 (332)
                      ++|+.......+ ..++...|+.....+.+.+.+...-..+|++|. .+...      .....+-      .... -.++
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~-~~~p  164 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTS-EKPP  164 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhh-cCCc
Confidence            998743211122 234567899999999999987643234444432 11110      0000000      0000 1233


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ...+|.+.+..+++...+++..|++..-++ ..++|.+
T Consensus       165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            445677666666666677777777654443 4577764

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.22  E-value=3.1e-05  Score=73.71  Aligned_cols=160  Identities=13%  Similarity=0.033  Sum_probs=89.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCC--CcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~--aDiVi   93 (332)
                      +.++|.|+||+|++|++++..|++.|+  +|+.+|++..  ......+........+.. .....++.+.+++  .|+||
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            457899999999999999999999887  8999997662  111111211110011111 1111233455554  59999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~  170 (332)
                      ++++.+...  ..+....+..|+.....+.+.+.+......+|++|.. ++...... ..+......++...+|.+....
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~-~~~~e~~~~~p~~~Y~~sK~~~  159 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWV-WGYRETDPLGGHDPYSSSKACA  159 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCC-CCCccCCCCCCCCcchhHHHHH
Confidence            999854321  1233456678999999999998766533356665542 11100000 0000111223445677766666


Q ss_pred             HHHHHHHHHHh
Q 020049          171 VRANTFVAEVL  181 (332)
Q Consensus       171 ~r~~~~la~~l  181 (332)
                      .++...+++.+
T Consensus       160 e~~~~~~~~~~  170 (349)
T TIGR02622       160 ELVIASYRSSF  170 (349)
T ss_pred             HHHHHHHHHHh
Confidence            66666666654

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02650 dihydroflavonol-4-reductase

Probab=98.22  E-value=2.9e-05  Score=74.02  Aligned_cols=177  Identities=15%  Similarity=0.033  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEEEEe----CCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~----~~~d~~~a~~~aDiV   92 (332)
                      ..++|.|+||+|++|++++..|+..|+  +|++++++. ......++... .....+..+.    ....+.++++++|+|
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V   81 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV   81 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence            346899999999999999999999988  888887765 11111222211 1111222211    122456778899999


Q ss_pred             EEcCCCCCCCCCC-hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch-----HHHHHHHHH---Hh--CCCCCCc
Q 020049           93 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIAAEVFK---KA--GTYDPKK  161 (332)
Q Consensus        93 i~~~g~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~-----t~~~~~~~~---~~--~~~~~~k  161 (332)
                      |++|+.......+ ....+..|+....++.+.+.+...-..+|++|.....-     .+...+-.+   ..  ...++..
T Consensus        82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            9998753221112 23566789999999999998765333555554321000     000000000   00  0000112


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      .+|.+.+...++...+++..|++..-++ +.++|...
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~  198 (351)
T PLN02650        162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI  198 (351)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence            4666666666666677777777654443 55778643

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.21  E-value=2.7e-05  Score=76.16  Aligned_cols=119  Identities=24%  Similarity=0.327  Sum_probs=75.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC----------------CCCeEEEEeCCCCHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~   84 (332)
                      |||+|||. |.||..+|..|+..|+  +|+++|+++.+  +.++....                ...++..   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999999 9999999999999998  89999997622  12222110                0112332   346678


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchHHHHHHHHHH
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t~~~~~~~~~  153 (332)
                      ++++||+||++.+.|.....      .-++..+....+.+.++. ++.+|+.. |-|.+..-.+...+..+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999887754321      123455555566666554 45555544 46666654443333333

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.20  E-value=3.4e-05  Score=72.27  Aligned_cols=114  Identities=18%  Similarity=0.139  Sum_probs=73.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCC-CCCeEEEE----eCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMD-TGAVVRGF----LGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~-~~~~v~~~----~~~~d~~~a~~~aDiVi   93 (332)
                      .+||.|+||+|++|++++..|+..|+  +|++++++.. ......+.... ....+..+    .....+.++++++|+||
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   81 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF   81 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence            36899999999999999999999998  8888877652 11122222111 01122221    11234667889999999


Q ss_pred             EcCCCCCCCCCCh-hhhHhhhHHHHHHHHHHHHhh-CCCcEEEEe
Q 020049           94 IPAGVPRKPGMTR-DDLFNINAGIVRTLCEGIAKC-CPNATVNLI  136 (332)
Q Consensus        94 ~~~g~~~~~g~~r-~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~  136 (332)
                      ++|+......... .+.+..|+....++.+.+.+. ... .+|++
T Consensus        82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~  125 (322)
T PLN02662         82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT  125 (322)
T ss_pred             EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence            9987542211122 356678999999999998765 333 44444

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.19  E-value=2.1e-05  Score=76.22  Aligned_cols=112  Identities=19%  Similarity=0.253  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--------------CCCeEEEEeCCCCHHhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~a~   86 (332)
                      |||+|||+ |+||..+|..++. |+  +|+.+|+++.+  +..+....              ...++.   .+++..++.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~---~t~~~~~~~   71 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFN---ATLDKNEAY   71 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEE---Eecchhhhh
Confidence            58999999 9999999987775 76  99999998721  11121110              011222   244566788


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCchHHH
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI  146 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~t~~  146 (332)
                      ++||+||++.+.|......     .-++..+++.++.+.+..|+.+||+- |-|.+..-.+
T Consensus        72 ~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l  127 (388)
T PRK15057         72 RDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAM  127 (388)
T ss_pred             cCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHH
Confidence            9999999997766322111     12345555555666554455555444 6787766444

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.19  E-value=2.2e-05  Score=81.37  Aligned_cols=169  Identities=14%  Similarity=0.043  Sum_probs=100.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC----HHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d----~~~a~~~aDiV   92 (332)
                      +.|||.|+||+|++|++++..|+.. ++  +|+.+|++... . .++...   ..+..+.+. +|    +.++++++|+|
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~-~-~~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~V  386 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDA-I-SRFLGH---PRFHFVEGDISIHSEWIEYHIKKCDVV  386 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchh-h-hhhcCC---CceEEEeccccCcHHHHHHHhcCCCEE
Confidence            5689999999999999999999874 67  99999986521 1 111111   122221111 11    34578999999


Q ss_pred             EEcCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH--HHHHHHHHHhCCCC---CCceEE
Q 020049           93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV--PIAAEVFKKAGTYD---PKKLLG  164 (332)
Q Consensus        93 i~~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t--~~~~~~~~~~~~~~---~~kviG  164 (332)
                      |++|+....  ......+.+..|+....++.+.++++. . .+|.+|. -+....  ....|-.......|   +...+|
T Consensus       387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg  464 (660)
T PRK08125        387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYS  464 (660)
T ss_pred             EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchH
Confidence            999875432  223345667889999999999999875 3 4444433 221100  00000000000001   223678


Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .+.+...++...+++..|++...++ ..++|.+
T Consensus       465 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        465 VSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence            8777677777777788787765554 4467764

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.18  E-value=1.7e-05  Score=78.20  Aligned_cols=169  Identities=12%  Similarity=0.001  Sum_probs=95.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .|||.|+||+|++|++++..|+..|+  +|+.+|...  ........  .. ..++..+... -+..++.++|+||++|+
T Consensus       119 ~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~D-~~~~~l~~~D~ViHlAa  192 (442)
T PLN02206        119 GLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRHD-VVEPILLEVDQIYHLAC  192 (442)
T ss_pred             CCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEECC-ccChhhcCCCEEEEeee
Confidence            47999999999999999999999988  899998643  11111111  11 1233332211 12356789999999987


Q ss_pred             CCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH--HHHHHHHHHh-CCCCCCceEEeehhhHH
Q 020049           98 VPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV--PIAAEVFKKA-GTYDPKKLLGVTMLDVV  171 (332)
Q Consensus        98 ~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t--~~~~~~~~~~-~~~~~~kviG~~~ld~~  171 (332)
                      ....  ...+..+.+..|+....++.+.+++..  ..+|++|. -+..-.  ....+..+.. .-..+...++.+.....
T Consensus       193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE  270 (442)
T PLN02206        193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAE  270 (442)
T ss_pred             ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHH
Confidence            5421  122345677899999999999998764  35555543 111000  0000000000 00111234565655555


Q ss_pred             HHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          172 RANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       172 r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ++...+.+..+++..-++ ..++|.+
T Consensus       271 ~~~~~y~~~~g~~~~ilR~~~vyGp~  296 (442)
T PLN02206        271 TLTMDYHRGANVEVRIARIFNTYGPR  296 (442)
T ss_pred             HHHHHHHHHhCCCeEEEEeccccCCC
Confidence            555555666666543332 3466754

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.16  E-value=2.8e-05  Score=72.75  Aligned_cols=117  Identities=15%  Similarity=0.109  Sum_probs=78.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHH--HHHHHhcCCCCCeEEE----EeCCCCHHhhcCCCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAVVRG----FLGQPQLENALTGMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~--~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aD   90 (332)
                      ..++|+|+||+||+|+.++..|+++|+  +|+-.=++.  .+.  +..+|....  .++..    ......+.+|+++||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            457999999999999999999999999  666554444  222  344454322  12222    112345789999999


Q ss_pred             EEEEcCCCCCCCCC-ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           91 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        91 iVi~~~g~~~~~g~-~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      .|+++|....-... ...+++.-.++...++.+.+.+.. ...=+++|+..
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~  130 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSST  130 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccH
Confidence            99999864322222 244678889999999999999887 22223454433

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.12  E-value=2.8e-05  Score=68.13  Aligned_cols=97  Identities=20%  Similarity=0.307  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +|+|+|+|+ |++|++++..+...++  ||.+-..+..+.....-...  .+.+..   . ..++|.+.||+||++.  |
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~---~-~~~dA~~~aDVVvLAV--P   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITG---G-SNEDAAALADVVVLAV--P   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--cccccc---C-ChHHHHhcCCEEEEec--c
Confidence            478999999 9999999999999998  98888776532222211111  233443   2 2368999999999994  3


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                                    .+.+.++.+.+...-.+-+||=.|||.+
T Consensus        70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~~   97 (211)
T COG2085          70 --------------FEAIPDVLAELRDALGGKIVIDATNPIE   97 (211)
T ss_pred             --------------HHHHHhHHHHHHHHhCCeEEEecCCCcc
Confidence                          3344455555554444677888899953

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.11  E-value=4.5e-05  Score=70.85  Aligned_cols=167  Identities=15%  Similarity=0.053  Sum_probs=95.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEE----eCCCCHHhhcCC--CcEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGF----LGQPQLENALTG--MDLV   92 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~--aDiV   92 (332)
                      ||.|+||+|++|+.++..|+..+...+|+++|....   .....++...   ..+..+    ....++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999999988763338999986431   1111222211   122221    112234566776  8999


Q ss_pred             EEcCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCc----hHHHHHHHHHHhCCCCCCceEEe
Q 020049           93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNS----TVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        93 i~~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~----~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |.+++....  .......++..|+.....+++.+.+...+..++.+|.. +..    ....     .......+...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence            999875421  11233456678999999999998877555556655431 100    0000     01111233345666


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      +.....++...+++..+++..-++ ..++|..
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            655556666666777776544443 3456643

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.09  E-value=1.1e-05  Score=77.84  Aligned_cols=172  Identities=14%  Similarity=0.052  Sum_probs=97.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..|||+|+||+|++|++++..|...|+  +|+.+|+... ..   +........+..  ......+..+++++|+||++|
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~-~~---~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKN-EH---MSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEeccc-cc---cccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            347999999999999999999999888  9999997531 10   000000011111  100112345678999999998


Q ss_pred             CCCCCCC---CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHH---HHHHHh-CCCCCCceEEeehh
Q 020049           97 GVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAA---EVFKKA-GTYDPKKLLGVTML  168 (332)
Q Consensus        97 g~~~~~g---~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~---~~~~~~-~~~~~~kviG~~~l  168 (332)
                      +.....+   ......+..|+....++++.+.+...+.+ |.+|.. +.--.....   .+.... ..+.+...+|.+..
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~sK~  172 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKL  172 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHHHH
Confidence            6432111   11223456799999999999987755544 444332 111000000   000010 01234456777666


Q ss_pred             hHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          169 DVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ...++...+++..|++..-++ ..++|.++
T Consensus       173 ~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        173 ATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            666665666777777654443 45777654

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.09  E-value=2.2e-05  Score=73.85  Aligned_cols=107  Identities=11%  Similarity=0.032  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|+..|+  +|+.++++....  ..+.+..  ..+..  .....++.++++++|+||.+++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~--v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWG--AELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcC--CEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            6899999999999999999999888  899998764211  1122111  11111  11123467889999999998753


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ..   ....++...|.....++++.+++..-+ .+|.+|
T Consensus        75 ~~---~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         75 RP---SDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CC---CCccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            21   112234566888888999998877644 444444

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.09  E-value=3.2e-05  Score=72.33  Aligned_cols=117  Identities=21%  Similarity=0.385  Sum_probs=78.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc--CC--C------CCeEEEEeCCCCHHhhcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD--T------GAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~~--~------~~~v~~~~~~~d~~~a~~~a   89 (332)
                      ++||+|+|| |.-|+++|..|+.+++  +|.|..+++.  .+.++..  ..  +      ++.+..   ++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence            469999999 9999999999999997  8999998762  2222322  22  1      223333   67999999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec---CCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS---NPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t---NP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |+|++..  |              ...++++++++..+- ++.+++.+|   .|-..  .+++++++..  +|.++ ++.
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~--~l~seii~e~--l~~~~-~~v  131 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETG--RLLSEIIEEE--LPDNP-IAV  131 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCc--chHHHHHHHH--cCCCe-EEE
Confidence            9999984  3              456677777776444 577777775   33322  2235666665  44444 444

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.08  E-value=3e-05  Score=73.25  Aligned_cols=113  Identities=17%  Similarity=0.212  Sum_probs=74.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH--HHHHHhcCCCCCeEEEE----eCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF----LGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiVi   93 (332)
                      .++|.|+||+|++|++++..|+..+...+|+++|.+....  ...++..    ..+..+    ....++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999998875323899999765221  1112211    122221    11123556788999999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++||....+  ..+..+.+..|+.....+.+.+.+.... .+|++|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2234567788999999999999876433 455554

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.07  E-value=3.9e-05  Score=70.51  Aligned_cols=163  Identities=15%  Similarity=0.081  Sum_probs=106.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhc--CCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENAL--TGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~--~~aDiVi~~   95 (332)
                      |+|.|+|++|++||+.+..|++.|+  +++.+|...  ....+...+ ..+ ..+++.   ..-+.+.|  ..-|.||..
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~-~~f~~gDi~D---~~~L~~vf~~~~idaViHF   74 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQ-FKFYEGDLLD---RALLTAVFEENKIDAVVHF   74 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhcc-CceEEecccc---HHHHHHHHHhcCCCEEEEC
Confidence            6899999999999999999999999  999999865  122222111 110 111111   11122223  478999999


Q ss_pred             CCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-----CCCCchHHHHHHHHHHhCCCCCCceEEeehh
Q 020049           96 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-----NPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        96 ~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-----NP~~~~t~~~~~~~~~~~~~~~~kviG~~~l  168 (332)
                      |+...-+.  +..+.+...|+-....+.+.|.++..+.+|.-.|     +|..+-  +     ....-..|.+-+|-|.|
T Consensus        75 Aa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~P--I-----~E~~~~~p~NPYG~sKl  147 (329)
T COG1087          75 AASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSP--I-----SETSPLAPINPYGRSKL  147 (329)
T ss_pred             ccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcc--c-----CCCCCCCCCCcchhHHH
Confidence            87543221  3457788999999999999999999877554432     443311  1     11122346678999988


Q ss_pred             hHHHHHHHHHHHhCCCCCCC-ceeEEEec
Q 020049          169 DVVRANTFVAEVLGLDPRDV-DVPVVGGH  196 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v-~~~v~G~h  196 (332)
                      ..++.-+.+++..+....-+ +.-+.|-|
T Consensus       148 m~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         148 MSEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            88888889988888554433 34455544

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.07  E-value=0.0001  Score=72.34  Aligned_cols=113  Identities=15%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC------------CCeEEEEeCCCCHHhh
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENA   85 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~a   85 (332)
                      .++|||+|||- |+||..+|..|+. ++  +|+.||+++.  .+..+.....            ...+..   +++. ++
T Consensus         4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~   73 (425)
T PRK15182          4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSEI-EK   73 (425)
T ss_pred             CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence            45799999999 9999999999877 46  9999999872  2223332211            012222   3454 57


Q ss_pred             cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHHH
Q 020049           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPI  146 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~~  146 (332)
                      +++||++|++.+.|.....      ..++..+....+.|.++.+ +.+||+- |.|.+..-.+
T Consensus        74 ~~~advvii~Vptp~~~~~------~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~  130 (425)
T PRK15182         74 IKECNFYIITVPTPINTYK------QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEE  130 (425)
T ss_pred             HcCCCEEEEEcCCCCCCCC------CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHH
Confidence            8999999999988864322      1224444444555555553 4444443 6777665433

>PLN02214 cinnamoyl-CoA reductase

Probab=98.05  E-value=7.6e-05  Score=71.04  Aligned_cols=169  Identities=15%  Similarity=0.055  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCCCCCeEEEEe----CCCCHHhhcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL----GQPQLENALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiV   92 (332)
                      .++|.|+||+|++|++++..|+..|+  +|+.++++...   .....+...  ...+..+.    ...++.++++++|+|
T Consensus        10 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214         10 GKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            45899999999999999999999988  88888876421   111222211  11222211    123466788999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC--CCchH-----HHHHHHHHHhCCC--CCCceE
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP--VNSTV-----PIAAEVFKKAGTY--DPKKLL  163 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP--~~~~t-----~~~~~~~~~~~~~--~~~kvi  163 (332)
                      |++|+...   ....+.+..|+.....+.+.+.+.... .+|++|.-  +....     ....|-.+....+  .+...+
T Consensus        86 ih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y  161 (342)
T PLN02214         86 FHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY  161 (342)
T ss_pred             EEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH
Confidence            99987542   234556778999999999999876544 34444321  11000     0000100000000  012235


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      |.+.....++...+++..|++..-++ ..++|.+
T Consensus       162 ~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~  195 (342)
T PLN02214        162 CYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPP  195 (342)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence            55555555666666666676654443 5677864

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.03  E-value=4.8e-05  Score=74.47  Aligned_cols=110  Identities=21%  Similarity=0.214  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC----------------CCeEEEEeCCCCH
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQL   82 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~   82 (332)
                      ..+||+|||. |+||..+|..|+..|+  +|+.+|+++.+-..  +.....                ...+..   +++ 
T Consensus         2 ~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~-   72 (415)
T PRK11064          2 SFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT-   72 (415)
T ss_pred             CccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc-
Confidence            3579999999 9999999999999998  99999998722111  221110                011221   222 


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHHH
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVPI  146 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~~  146 (332)
                         +++||+||++...|.....      ..++..+.+.++.+.++.+ +.+||.. |.|.+..-.+
T Consensus        73 ---~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         73 ---PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             ---cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence               3589999999887754332      2235556666677776664 5555554 5677765444

>PRK06194 hypothetical protein; Provisional

Probab=98.01  E-value=0.00011  Score=67.62  Aligned_cols=159  Identities=19%  Similarity=0.154  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|++|++++..|+..|.  +|+++|.+.  ......++...  ...+..+. .-+|   ++++++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999988  899999875  23333344322  12333221 1123   223333      


Q ss_pred             -CCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHH----HHHHHHhhCCC-----cEEEEecCCCCchHHHHHHHH
Q 020049           88 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRT----LCEGIAKCCPN-----ATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~----i~~~i~~~~p~-----a~viv~tNP~~~~t~~~~~~~  151 (332)
                       ..|+||+++|.....   ..+.   ...+..|+.....    +.+.+.+.+.+     +.++++|......        
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~--------  153 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL--------  153 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc--------
Confidence             469999999875321   1121   2234455554444    44445554432     5566655432211        


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                          +.|..-.++.+......+...++..++.....+++..+.
T Consensus       154 ----~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        154 ----APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             ----CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence                223334466655455566677777777665566655554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.99  E-value=6.5e-05  Score=71.42  Aligned_cols=163  Identities=15%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-----CCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVi~   94 (332)
                      |||.|+||+|++|++++..|+.. ++  +|+.+|....  ...++...   ..+..+...     ..+.++++++|+||+
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH   74 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVILP   74 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEEE
Confidence            68999999999999999999875 56  8999996531  11122111   123322111     123356789999999


Q ss_pred             cCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCch---HHHHHHHHHHhCCC------CCCce
Q 020049           95 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNST---VPIAAEVFKKAGTY------DPKKL  162 (332)
Q Consensus        95 ~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~---t~~~~~~~~~~~~~------~~~kv  162 (332)
                      +++....  ...+.......|+....++++.+.+..  ..+|.+|.. +...   ..+ .   ...+-+      ++...
T Consensus        75 ~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~vyg~~~~~~~-~---ee~~~~~~~~~~~p~~~  148 (347)
T PRK11908         75 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCPDEEF-D---PEASPLVYGPINKPRWI  148 (347)
T ss_pred             CcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecceeeccCCCcCc-C---ccccccccCcCCCccch
Confidence            9875322  223344456778888889999888754  355555432 1000   000 0   000000      12234


Q ss_pred             EEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          163 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      +|.+.....++...+++..+++..-++ +.++|.+
T Consensus       149 Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        149 YACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG  183 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence            666555555555556666677655554 4567754

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.97  E-value=7.4e-05  Score=70.34  Aligned_cols=100  Identities=22%  Similarity=0.344  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCC------CCCeEEEEeCCCCHHhhcCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~------~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      +|||+|||+ |.+|+.++..|+..++  +|.++|+++.  +....+..+..      ....+..   +++..++++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            369999999 9999999999999888  8999998752  11111100000      0012222   2466678899999


Q ss_pred             EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                      ||++...                ..+.++++.+..+. |+.++|..+|-++
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            9999521                23455555666654 5677777776554

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.96  E-value=6e-05  Score=70.52  Aligned_cols=111  Identities=18%  Similarity=0.219  Sum_probs=73.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |||.|+||+|++|+.++..|+..|+  +|+++|++....  .++.+... ..+.. .....++.++++++|.||.+++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            5899999999999999999999887  999999865211  11111110 11111 111123567788999999998653


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .............|+.....+++.+.+..-. .+|+.|
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  112 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS  112 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            2223345566778899999999988876433 344444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.95  E-value=5.1e-05  Score=70.45  Aligned_cols=169  Identities=17%  Similarity=0.102  Sum_probs=98.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC-cEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM-DLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a-DiVi~~~g~~   99 (332)
                      |+|.|+||+|++|++++..|++.|+  +|+.+|.......... .+... ...... ......+.+++. |.||++++..
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~-~~~d~~-~~~~~~~~~~~~~d~vih~aa~~   75 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEF-VVLDLT-DRDLVDELAKGVPDAVIHLAAQS   75 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccce-eeeccc-chHHHHHHHhcCCCEEEEccccC
Confidence            3599999999999999999999988  9999998652111110 11100 000100 011234556777 9999998876


Q ss_pred             CCCCCCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH---HHHHHHHHHhCCCCCCceEEeehhhHHH
Q 020049          100 RKPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV---PIAAEVFKKAGTYDPKKLLGVTMLDVVR  172 (332)
Q Consensus       100 ~~~g~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t---~~~~~~~~~~~~~~~~kviG~~~ld~~r  172 (332)
                      ..++..+   .++...|+...+++++..++ +.-..++..|. .+..-.   ..+.+-.  ..-.| ...+|.+.+..++
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~-~~~~~~v~~ss~~~~~~~~~~~~~~E~~--~~~~p-~~~Yg~sK~~~E~  151 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARA-AGVKRFVFASSVSVVYGDPPPLPIDEDL--GPPRP-LNPYGVSKLAAEQ  151 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHH-cCCCeEEEeCCCceECCCCCCCCccccc--CCCCC-CCHHHHHHHHHHH
Confidence            5444322   35778999999999999998 33334444332 111100   0001100  01111 1246777766666


Q ss_pred             HHHHHHHHhCCCCCCCc-eeEEEecCC
Q 020049          173 ANTFVAEVLGLDPRDVD-VPVVGGHAG  198 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~hg~  198 (332)
                      .....++..+++..-++ ..++|....
T Consensus       152 ~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         152 LLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            66666666677766665 468876544

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.93  E-value=0.00025  Score=66.59  Aligned_cols=175  Identities=17%  Similarity=0.068  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhc-CCCCCeEEEE----eCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH-MDTGAVVRGF----LGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~-~~~~~~v~~~----~~~~d~~~a~~~aDiVi   93 (332)
                      .++|.|+||+|++|++++..|+..|+  +|++++++... .....+.. ......+..+    ....++.++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            36899999999999999999999988  88887766521 11111111 1111222221    11234557788999999


Q ss_pred             EcCCCCCCC-C-CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHH---H-HHHHHHhCCC------CCCc
Q 020049           94 IPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI---A-AEVFKKAGTY------DPKK  161 (332)
Q Consensus        94 ~~~g~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~---~-~~~~~~~~~~------~~~k  161 (332)
                      ++||..... . ......+..|+.....+.+.+.++.....||++|.-.......   . ...+....-.      ++..
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~  162 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ  162 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence            999854211 1 1224456789999999999887754223455543311100000   0 0000000001      1123


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .+|.+.+...++...+++..|++..-++ +.++|..
T Consensus       163 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        163 WYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence            5677766666676667777776544442 5567754

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.93  E-value=0.00012  Score=69.52  Aligned_cols=176  Identities=16%  Similarity=0.126  Sum_probs=98.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE----EeCCCCHHhhcC--CCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENALT--GMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~--~aDiVi~   94 (332)
                      |||.|+||+|++|++++..|+..|.. .++.+|.....+....+.+......+..    .....++.++++  ++|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQD-SVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCC-eEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            58999999999999999999888752 4666776431111111211110112221    111123345564  4799999


Q ss_pred             cCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhC-------CC-cEEEEecCC-CCchHHHHHH--------HHHHhC
Q 020049           95 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNP-VNSTVPIAAE--------VFKKAG  155 (332)
Q Consensus        95 ~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~-------p~-a~viv~tNP-~~~~t~~~~~--------~~~~~~  155 (332)
                      +|+....  ......+++..|+.....+++.+.++.       .. ..+|.+|.. +.......-.        .+....
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~  159 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETT  159 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccC
Confidence            9986421  112345677899999999999998752       11 244444322 1110000000        000011


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      .+.+...+|.+.....++...+++.++++.-.++ ..++|.+.
T Consensus       160 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        160 AYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            2334567788777777777777788887654443 45778653

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.93  E-value=2.1e-05  Score=60.50  Aligned_cols=94  Identities=19%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-ccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      ||+|||+ |.+|++++..|...+ ...+|.++ ++++.  ...++.... ...+.    +.+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~~~~~----~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-GVQAT----ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-TTEEE----SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-ccccc----cCChHHhhccCCEEEEEEC--
Confidence            7999999 999999999999888 23488866 87652  222222211 11222    2245789999999999952  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                                    -..+.++++.+....++..+|-++||
T Consensus        71 --------------p~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --------------PQQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --------------GGGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --------------HHHHHHHHHHHhhccCCCEEEEeCCC
Confidence                          12234556666444567777777775

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.93  E-value=0.00016  Score=68.58  Aligned_cols=159  Identities=13%  Similarity=0.011  Sum_probs=90.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhc-C--CCCCeEEEEe-CCCC---HHhhcCC--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISH-M--DTGAVVRGFL-GQPQ---LENALTG--   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~-~--~~~~~v~~~~-~~~d---~~~a~~~--   88 (332)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++..   ......+.. .  .....+..+. .-+|   +.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999999888  9999997641   111122210 0  0011222211 1122   3455664  


Q ss_pred             CcEEEEcCCCCCCC-C-CChhhhHhhhHHHHHHHHHHHHhhC-CC-cEEEEecC-CCCch-HHHHHHHHHHhCCCCCCce
Q 020049           89 MDLVIIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCC-PN-ATVNLISN-PVNST-VPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        89 aDiVi~~~g~~~~~-g-~~r~~~~~~n~~~~~~i~~~i~~~~-p~-a~viv~tN-P~~~~-t~~~~~~~~~~~~~~~~kv  162 (332)
                      .|+||++|+..... . ......+..|+.....+++.+.+.+ .+ ..++.+|. -+..- ...   .......+.+...
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~---~~~E~~~~~p~~~  155 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI---PQNETTPFYPRSP  155 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC---CCCCCCCCCCCCh
Confidence            59999999864322 1 1123344567778889999888765 22 34554432 11110 000   0001112334556


Q ss_pred             EEeehhhHHHHHHHHHHHhCCC
Q 020049          163 LGVTMLDVVRANTFVAEVLGLD  184 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~  184 (332)
                      +|.+.+...++...+++.++++
T Consensus       156 Y~~sK~~~e~~~~~~~~~~~~~  177 (343)
T TIGR01472       156 YAAAKLYAHWITVNYREAYGLF  177 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCc
Confidence            7777777777777777777765

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=97.92  E-value=0.00017  Score=68.60  Aligned_cols=176  Identities=16%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE----EeCCCCHHhhcCC--CcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENALTG--MDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~--aDiVi~   94 (332)
                      +||.|+||+|++|++++..|+..|.. .++++|..+..+....+.+......+..    +....++.+++++  .|+||+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSD-AVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCC-EEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            58999999999999999999988752 4667776532111111211100112221    1111234455664  899999


Q ss_pred             cCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhC-------CC-cEEEEecCC-CCchHHHHHHHHHHhCCCCCCceE
Q 020049           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        95 ~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~-------p~-a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      +||.....  ..........|+.....+++.+.++.       +. ..+|.+|.. +.....-....+.......+...+
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y  160 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY  160 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence            99864321  12235567789999999999987652       12 245555432 111000000000001112234457


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      |.+.+...++...+++.++++..-++ ..++|.+.
T Consensus       161 ~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        161 SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            77777777777777888887654443 56677653

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.92  E-value=0.00011  Score=74.02  Aligned_cols=118  Identities=14%  Similarity=0.090  Sum_probs=73.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcC-----CC--CCeEEEEe----CCCCHH
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-----DT--GAVVRGFL----GQPQLE   83 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~-----~~--~~~v~~~~----~~~d~~   83 (332)
                      .++.+.|.|+||+|++|+.++..|+..|+  +|++++++..  ......+.+.     ..  ..++..+.    ...++.
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~  154 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG  154 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence            33446799999999999999999999888  8999988762  2222222210     00  01222211    112345


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +++.++|+||+++|............+..|......+++.+.+..-. .||++|
T Consensus       155 ~aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        155 PALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             HHhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            67899999999988653221122233456778888888888766433 455554

>PLN02778 3,5-epimerase/4-reductase

Probab=97.92  E-value=0.00018  Score=67.23  Aligned_cols=96  Identities=22%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--CCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVi~~~   96 (332)
                      +.|||.|+||+|++|++++..|...|+  +|++...+...     ..               .+...+  .++|+||++|
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~-----~~---------------~v~~~l~~~~~D~ViH~A   65 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLEN-----RA---------------SLEADIDAVKPTHVFNAA   65 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCC-----HH---------------HHHHHHHhcCCCEEEECC
Confidence            458999999999999999999999887  77654322100     00               011112  2689999999


Q ss_pred             CCCCCCC-----CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g-----~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +....+.     ....+....|+....++++.+++.... ++++.|
T Consensus        66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~sS  110 (298)
T PLN02778         66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNYAT  110 (298)
T ss_pred             cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEec
Confidence            8653222     234567789999999999999887543 344333

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.88  E-value=0.00014  Score=69.38  Aligned_cols=172  Identities=17%  Similarity=0.081  Sum_probs=94.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH--HHHHHhcCCCCCeEEEEeC----CCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVi   93 (332)
                      .|||.|+||+|++|++++..|+..|+  +|++++.+....  ...++..   ...+..+..    ..++.+++++.|+||
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi   84 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGVF   84 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEEE
Confidence            47999999999999999999999888  888887654211  1112211   122332211    122456678899999


Q ss_pred             EcCCCCCCC---C-CChhhh-----HhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchH-------HHHHHHH---HH
Q 020049           94 IPAGVPRKP---G-MTRDDL-----FNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTV-------PIAAEVF---KK  153 (332)
Q Consensus        94 ~~~g~~~~~---g-~~r~~~-----~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t-------~~~~~~~---~~  153 (332)
                      ++|+.....   . .+..+.     +..|+.....+.+.+.++..-..+|++|. -+....       ....+-.   ..
T Consensus        85 h~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~  164 (353)
T PLN02896         85 HVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPID  164 (353)
T ss_pred             ECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHH
Confidence            999864321   1 112222     23345778888888876632234555443 221100       0000000   00


Q ss_pred             --hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          154 --AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       154 --~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                        ....++.-.+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus       165 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        165 HVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence              000112235777777777777777777776544442 4566754

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.87  E-value=0.00011  Score=69.71  Aligned_cols=101  Identities=21%  Similarity=0.225  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC------CCeE----EEEeCCCCHHhhcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------GAVV----RGFLGQPQLENALTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~------~~~v----~~~~~~~d~~~a~~~a   89 (332)
                      +|||+|||+ |.||+.+|..|...|+  +|.++|+++..   ..+.....      ....    ..+..+++. ++++++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   74 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG---DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATA   74 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH---HHHHhcCceeecCCCcceecccceeEeccCh-hhccCC
Confidence            479999999 9999999999999988  89999975411   11111110      0000    001113454 678999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCch
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  143 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~  143 (332)
                      |+||++...+.                ..++++.+..+. ++.+|+..+|..+..
T Consensus        75 D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~  113 (341)
T PRK08229         75 DLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA  113 (341)
T ss_pred             CEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence            99999863221                123345555554 567777778887654

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.87  E-value=0.00014  Score=68.54  Aligned_cols=113  Identities=18%  Similarity=0.151  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC--CCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~--~aDiV   92 (332)
                      |||.|+||+|++|++++..|+..|+  +|+++|...  .......+.+.. ...+..+. .-+|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            6899999999999999999999887  899998643  111111122111 11111111 1122   334454  68999


Q ss_pred             EEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        93 i~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |++++.....  .....+.+..|+.....+++.+++.... .+|.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998764321  1234567788999999999998876433 344444

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.86  E-value=0.0002  Score=66.65  Aligned_cols=102  Identities=21%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC---CCeEEE-EeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GAVVRG-FLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---~~~v~~-~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|+|+ |.+|+.++..|.+.|+  +|.++|++...-  ..+.....   ...... ...+++..+ .+++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHL--DALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHH--HHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            68999999 9999999999998887  999999864211  11111110   011110 111334444 49999999995


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  144 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t  144 (332)
                      ...                .+.++++.+..+. ++..||...|.++..-
T Consensus        75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~  107 (304)
T PRK06522         75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE  107 (304)
T ss_pred             ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence            311                1334455555443 5678888899887653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.86  E-value=0.00011  Score=62.51  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      ++||++||. |.+|+.++..|+..|+  +|+.||++.  ....++.+..    ....   .++.+++++||+|+.+.   
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v---   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV---   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S---
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec---
Confidence            479999999 9999999999999999  999999864  3333344332    3332   35689999999999983   


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHH--HHhhC-CCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEG--IAKCC-PNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~--i~~~~-p~a~viv~t  137 (332)
                                  .+-+.++++...  +.... ++.++|..|
T Consensus        66 ------------~~~~~v~~v~~~~~i~~~l~~g~iiid~s   94 (163)
T PF03446_consen   66 ------------PDDDAVEAVLFGENILAGLRPGKIIIDMS   94 (163)
T ss_dssp             ------------SSHHHHHHHHHCTTHGGGS-TTEEEEE-S
T ss_pred             ------------ccchhhhhhhhhhHHhhccccceEEEecC
Confidence                        234455666665  55555 444444443

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.85  E-value=0.00044  Score=64.91  Aligned_cols=115  Identities=16%  Similarity=0.079  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEEEEe----CCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~----~~~d~~~a~~~aDiVi~   94 (332)
                      ++|.|+||+|++|++++..|+..|+  +|++...+. .......+... .....+..+.    ....+.++++++|+||+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            5899999999999999999999888  787655444 21222222211 1112233221    12345677899999999


Q ss_pred             cCCCCCCC-CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        95 ~~g~~~~~-g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +|+..... .....+++..|+.....+.+.+.+...-..||.+|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~S  127 (322)
T PLN02986         84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTS  127 (322)
T ss_pred             eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            98753211 11223456778999999999887653212444443

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.85  E-value=0.00013  Score=68.63  Aligned_cols=78  Identities=23%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .|||+|||+ |.+|++++..|...|+  +|.++|+++.                      .++.+++++||+||++.  |
T Consensus         4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v--p   56 (308)
T PRK14619          4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV--S   56 (308)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--C
Confidence            479999999 9999999999999998  9999998641                      24567889999999984  2


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhh--CCCcEEEEecC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  138 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~--~p~a~viv~tN  138 (332)
                                    ...++++++.+..+  .++.+++..|+
T Consensus        57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~   83 (308)
T PRK14619         57 --------------MKGVRPVAEQVQALNLPPETIIVTATK   83 (308)
T ss_pred             --------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence                          13455666666643  35677777776

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.85  E-value=4.6e-05  Score=69.35  Aligned_cols=112  Identities=17%  Similarity=0.089  Sum_probs=72.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCe--EEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV--VRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~--v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ..++||+|+||+|||||+++..|+..|+  +|+..|... .+....+.|....+.  +....   --..-++.+|-|+..
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~f-tg~k~n~~~~~~~~~fel~~hd---v~~pl~~evD~IyhL   98 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYF-TGRKENLEHWIGHPNFELIRHD---VVEPLLKEVDQIYHL   98 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccc-ccchhhcchhccCcceeEEEee---chhHHHHHhhhhhhh
Confidence            4468999999999999999999999997  999999764 222233344432232  33221   123568999999998


Q ss_pred             CCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           96 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        96 ~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |.....++  ....+.+..|.-.........++.+  +.++.+|
T Consensus        99 Aapasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~aS  140 (350)
T KOG1429|consen   99 AAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLAS  140 (350)
T ss_pred             ccCCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEee
Confidence            75433322  3445556666666666666665554  5555553

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.83  E-value=0.00019  Score=68.90  Aligned_cols=97  Identities=15%  Similarity=0.271  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEccCCc---HHHHHHHhcC--C--C------CCeEEEEeCCCCH
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--D--T------GAVVRGFLGQPQL   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~~---~~~~~dl~~~--~--~------~~~v~~~~~~~d~   82 (332)
                      +||+|||+ |..|+++|..|..++.     ..+|.|+.+++.   +..+.++.+.  .  +      +..+..   ++|+
T Consensus        12 ~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~---tsdl   87 (365)
T PTZ00345         12 LKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA---VSDL   87 (365)
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE---ecCH
Confidence            69999999 9999999999998761     238888887762   2334444422  1  1      223443   4578


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh--hCC-CcEEEEec
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CCP-NATVNLIS  137 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~--~~p-~a~viv~t  137 (332)
                      .+++++||+||++.  |              ...++++++.+..  +-+ +.++|.++
T Consensus        88 ~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         88 KEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             HHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEEe
Confidence            88999999999984  2              4556777777776  433 44555553

>PLN02583 cinnamoyl-CoA reductase

Probab=97.81  E-value=0.00044  Score=64.44  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=71.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH----HHHHHHhcCCCCCeEEEE----eCCCCHHhhcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGF----LGQPQLENALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiV   92 (332)
                      ++|+|+||+|++|++++..|+..|+  +|++++++...    ....++...  ...+..+    ....++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999998  88888764311    111222111  1122221    1123456789999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +..++.+........+.+..|+.....+.+.+.+...-..||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            987654322111234567889999999999988763223444443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.80  E-value=0.00033  Score=65.37  Aligned_cols=120  Identities=12%  Similarity=0.146  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC-----CCeEE-EEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVR-GFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-----~~~v~-~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|+|+ |.+|..++..|...|+  +|.++++ +..  ...+.+...     ..... .....++.+++.+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKR--AKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHH--HHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            68999999 9999999999999887  8999998 411  111221110     01111 00012355555689999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE-eehhh
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTMLD  169 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG-~~~ld  169 (332)
                      +...+                .+.++++.+..+. ++..|+...|.++....     +...  +|..++++ ++...
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~-----l~~~--~~~~~v~~g~~~~~  128 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQ-----LEPY--FGRERVLGGVVFIS  128 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHH-----HHHh--CCcccEEEEEEEEE
Confidence            85322                1334555555544 56677778898875532     2333  56667764 44433

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.80  E-value=0.00027  Score=60.57  Aligned_cols=92  Identities=24%  Similarity=0.286  Sum_probs=64.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcCCCcEEEEcCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTGMDLVIIPAGV   98 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~aDiVi~~~g~   98 (332)
                      |+|+||+|++|+.++..|+..++  +|+++-+++.+.  .+      ...+..+.. ..   ++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~--~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKA--ED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGH--HH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhc--cc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999997  999998775321  11      123332221 12   356889999999999865


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      +.+           ....++.+.+.+++.... .++++
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~   96 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYL   96 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceee
Confidence            533           277788888888876544 34443

...

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.79  E-value=0.00038  Score=72.27  Aligned_cols=181  Identities=15%  Similarity=0.022  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc--CCCc
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMD   90 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--~~aD   90 (332)
                      +.+++||.|+||+|++|++++..|+..+...+|+.+|..........+........+..+.. -+|   +...+  .++|
T Consensus         3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D   82 (668)
T PLN02260          3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID   82 (668)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence            45678999999999999999999988744348999997531111111111111123332221 122   12222  6899


Q ss_pred             EEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHH-HHHHHhCCCCCCceEEee
Q 020049           91 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAA-EVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus        91 iVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~-~~~~~~~~~~~~kviG~~  166 (332)
                      +||++|+......  ....++...|+.....+++.+++...-..+|.+|.- +.-...--. .-........+...+|.+
T Consensus        83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~s  162 (668)
T PLN02260         83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSAT  162 (668)
T ss_pred             EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHH
Confidence            9999998653211  123456678999999999999877533345555431 100000000 000000011133456666


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      .+..+++...+++..+++..-++ ..++|.+.
T Consensus       163 K~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        163 KAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            66666666666666676644443 55677553

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.79  E-value=0.0002  Score=67.68  Aligned_cols=98  Identities=18%  Similarity=0.384  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc----CC------CCCeEEEEeCCCCHHhhc-CCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH----MD------TGAVVRGFLGQPQLENAL-TGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~----~~------~~~~v~~~~~~~d~~~a~-~~a   89 (332)
                      |||+|||| |.+|+.++..|.+.++  +|.++++++.  .+..+..    ..      ....++.   ++|+.+++ .++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence            68999999 9999999999999887  8999998652  2222221    10      1112333   34666776 589


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh-h-CCCcEEEEecCCCCc
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNS  142 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~-~-~p~a~viv~tNP~~~  142 (332)
                      |+||++..                ...+.++++.+.. + .++..++..+|=.+.
T Consensus        73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            99999841                2334555556654 4 356667777776643

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.77  E-value=0.00023  Score=67.81  Aligned_cols=96  Identities=21%  Similarity=0.357  Sum_probs=63.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEccCC---cHHHHHHHh--cCC--C------CCeEEEEeCCCCH
Q 020049           22 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMD--T------GAVVRGFLGQPQL   82 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~------~~~ei~L~D~~~---~~~~~~dl~--~~~--~------~~~v~~~~~~~d~   82 (332)
                      ||+|||+ |..|+++|..|..++      +..+|.|+.+++   -......+.  |..  .      +..+..   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            6999999 999999999999877      223999998844   122333332  211  1      123343   4688


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  137 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~t  137 (332)
                      ++++++||+||++.  |              ...++++++.+..+-+ +..+|.+|
T Consensus        77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~t  116 (342)
T TIGR03376        77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISCI  116 (342)
T ss_pred             HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            89999999999984  3              4556667777766543 44555554

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.77  E-value=0.0002  Score=68.29  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC----CC-------CCeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------GAVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----~~-------~~~v~~~~~~~d~~~a~~   87 (332)
                      ++|||+|+|+ |.+|+.++..|...+   +++++..++.  .+.++...    ..       ...+..   ++|+.++++
T Consensus         6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~--~~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~   76 (341)
T PRK12439          6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAE--TADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN   76 (341)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHH--HHHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence            4589999999 999999999999877   3567766542  22222211    01       112332   457778899


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      ++|+||++.  |              ...++++++.+..+. ++..+|.++|-.+.
T Consensus        77 ~aDlVilav--p--------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         77 CADVVVMGV--P--------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             cCCEEEEEe--C--------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            999999984  1              335666677776654 56678888886654

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=97.77  E-value=0.00019  Score=67.94  Aligned_cols=164  Identities=15%  Similarity=0.043  Sum_probs=91.1

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcC--CCCCeEEEE----eCCCCHHhhc
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTGAVVRGF----LGQPQLENAL   86 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~--~~~~~v~~~----~~~~d~~~a~   86 (332)
                      +..+.++|.|+||+|++|++++..|+..|+  +|+++|..+.   ......+...  .....+..+    ....++.+++
T Consensus         2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   79 (340)
T PLN02653          2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL   79 (340)
T ss_pred             CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence            334557999999999999999999999988  8999987541   1111222110  001122211    1112334556


Q ss_pred             CC--CcEEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCC-c---EEEEec-CCCCchHHHHHHHHHHhCCC
Q 020049           87 TG--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN-A---TVNLIS-NPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        87 ~~--aDiVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~-a---~viv~t-NP~~~~t~~~~~~~~~~~~~  157 (332)
                      ++  .|+||++|+......  ......+..|+.....+++.+.++... +   .+|.+| .-+.....   ........+
T Consensus        80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~---~~~~E~~~~  156 (340)
T PLN02653         80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTP---PPQSETTPF  156 (340)
T ss_pred             HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCC---CCCCCCCCC
Confidence            54  599999998643221  122334567888889999998877643 2   344443 11110000   000000112


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCC
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLD  184 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~  184 (332)
                      .+...+|.+.....++...+++.+++.
T Consensus       157 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~  183 (340)
T PLN02653        157 HPRSPYAVAKVAAHWYTVNYREAYGLF  183 (340)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHcCCe
Confidence            234567777666666666677777653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.76  E-value=0.00023  Score=67.41  Aligned_cols=71  Identities=25%  Similarity=0.368  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC------C--CCCeEEEEeCCCCHHhhcCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------D--TGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~------~--~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      +|||+|||+ |.+|+.++..|+..|+  +|.++|+++.......-.+.      .  ....+..   ++++.++++++|+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~   77 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF   77 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence            579999999 9999999999999888  99999997522111111110      0  0111332   3466788899999


Q ss_pred             EEEcC
Q 020049           92 VIIPA   96 (332)
Q Consensus        92 Vi~~~   96 (332)
                      ||++.
T Consensus        78 Vi~~v   82 (328)
T PRK14618         78 AVVAV   82 (328)
T ss_pred             EEEEC
Confidence            99984

>PLN02572 UDP-sulfoquinovose synthase

Probab=97.72  E-value=0.00021  Score=70.54  Aligned_cols=175  Identities=15%  Similarity=0.139  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---H---------------HHHHHHhcCCCCCeEEEEeC--
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---P---------------GVTADISHMDTGAVVRGFLG--   78 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~---------------~~~~dl~~~~~~~~v~~~~~--   78 (332)
                      +.+||.|+||+|++|++++..|+..|+  +|+++|....   .               .....+.+.. ...+..+..  
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl  122 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI  122 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence            457899999999999999999999888  8999984320   0               0000011100 011222111  


Q ss_pred             --CCCHHhhcC--CCcEEEEcCCCCCCC-C-CCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCch--HHH
Q 020049           79 --QPQLENALT--GMDLVIIPAGVPRKP-G-MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNST--VPI  146 (332)
Q Consensus        79 --~~d~~~a~~--~aDiVi~~~g~~~~~-g-~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~--t~~  146 (332)
                        ...+.++++  ++|+||++|+....+ . .+.   ...+..|+....++++.+++++....+|.+| .-+..-  ..+
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence              122345555  489999998653211 1 111   2335679999999999998887654455443 211100  000


Q ss_pred             HHHH-HH------Hh---CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          147 AAEV-FK------KA---GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       147 ~~~~-~~------~~---~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                       .+- +.      ..   .-..+...+|.+.+...++...+++.+|++.-.++ +.++|.+.
T Consensus       203 -~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        203 -EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             -cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence             000 00      00   01223457888877767777778888887765553 56788653

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.70  E-value=0.00025  Score=65.19  Aligned_cols=99  Identities=21%  Similarity=0.254  Sum_probs=67.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  102 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~  102 (332)
                      |.|+||+|++|++++..|+..|+  +|+.++++......  +..    ..+..... ....++++++|+||++++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999999887  99999987621100  000    01111111 23357889999999999865432


Q ss_pred             C-C---ChhhhHhhhHHHHHHHHHHHHhhCCC
Q 020049          103 G-M---TRDDLFNINAGIVRTLCEGIAKCCPN  130 (332)
Q Consensus       103 g-~---~r~~~~~~n~~~~~~i~~~i~~~~p~  130 (332)
                      + .   ....+...|+...+.+++.++++...
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            2 1   12345667999999999999887643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.67  E-value=0.00038  Score=64.84  Aligned_cols=160  Identities=10%  Similarity=0.087  Sum_probs=86.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC-HHhhc-----CCCcEEEEcC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA   96 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aDiVi~~~   96 (332)
                      |.|+||+|++|++++..|+..|+ ..+.++|..........+.+... .+...   ..+ +++++     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998886 24667787542111011111110 00000   011 12222     3799999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC------CCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP------~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~  170 (332)
                      +.+.............|+....++.+.+.+...  .+|..|..      .+...       .......+...+|.+....
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~-------~E~~~~~p~~~Y~~sK~~~  147 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFI-------EEREYEKPLNVYGYSKFLF  147 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCC-------ccCCCCCCCCHHHHHHHHH
Confidence            754333333445677899999999999987653  34544332      11000       0001112234466655555


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          171 VRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       171 ~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .++...++...+++..-++ ..++|..
T Consensus       148 E~~~~~~~~~~~~~~~~lR~~~vyG~~  174 (308)
T PRK11150        148 DEYVRQILPEANSQICGFRYFNVYGPR  174 (308)
T ss_pred             HHHHHHHHHHcCCCEEEEeeeeecCCC
Confidence            5554445444455444343 5677754

>PLN02240 UDP-glucose 4-epimerase

Probab=97.65  E-value=0.00053  Score=65.04  Aligned_cols=116  Identities=18%  Similarity=0.160  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC--CCCeEEEEe----CCCCHHhhcC--C
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFL----GQPQLENALT--G   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~----~~~d~~~a~~--~   88 (332)
                      +.+||.|+||+|++|++++..|+..|+  +|+++|...  .......+.+..  ....+..+.    ...++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            457999999999999999999998887  899998643  111111121110  011222111    1122334444  6


Q ss_pred             CcEEEEcCCCCCC-CC-CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           89 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        89 aDiVi~~~g~~~~-~g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +|+||++++.... .. ......+..|+.....+++.+.+..... +|.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            8999999886422 11 2345567889999999999887654333 44444

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.62  E-value=0.00015  Score=67.64  Aligned_cols=99  Identities=17%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|+..|   +|+.+|....          ....++.   ....+.++++  ++|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~----------~~~~Dl~---d~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST----------DYCGDFS---NPEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc----------cccCCCC---CHHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999998776   4777776421          0001111   1112345555  58999999876


Q ss_pred             CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ....  ..........|+....++++.+++..  ..+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g--~~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVG--AWVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Confidence            4321  12233345679999999999998765  3455443

>PLN02253 xanthoxin dehydrogenase

Probab=97.62  E-value=0.001  Score=60.98  Aligned_cols=147  Identities=17%  Similarity=0.190  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|.+..  .....++..   ..++..+. +-+|   .+++++     
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~   91 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK   91 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999888  8999998652  222223321   12222211 1123   223233     


Q ss_pred             --CCcEEEEcCCCCCCC-C----CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           88 --GMDLVIIPAGVPRKP-G----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~-g----~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                        ..|++|+++|..... +    .+   ....+..|+.....+.+.+.++   ...+.+++++......           
T Consensus        92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-----------  160 (280)
T PLN02253         92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAI-----------  160 (280)
T ss_pred             hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcc-----------
Confidence              689999999864321 1    11   1234556655554444443322   1345666665433211           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                       +.+..-.++.+......+.+.++..++
T Consensus       161 -~~~~~~~Y~~sK~a~~~~~~~la~e~~  187 (280)
T PLN02253        161 -GGLGPHAYTGSKHAVLGLTRSVAAELG  187 (280)
T ss_pred             -cCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence             122223466655455567777777775

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.61  E-value=0.00073  Score=64.41  Aligned_cols=125  Identities=18%  Similarity=0.246  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH------HHH------HH--HhcCCCCCeEEEEeCCCCHHhh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT------AD--ISHMDTGAVVRGFLGQPQLENA   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~------~~~------~d--l~~~~~~~~v~~~~~~~d~~~a   85 (332)
                      .++|+|||- |+||..+|..++..|+  .++-+|+|+.+      |..      .|  +.......+++.   |+|. +.
T Consensus         9 ~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~   81 (436)
T COG0677           9 SATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EE   81 (436)
T ss_pred             ceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hh
Confidence            379999999 9999999999999999  99999999711      110      00  101111234554   5675 55


Q ss_pred             cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCc-EEEE-ecCCCCchHHHHHHHHHHhCCC
Q 020049           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNL-ISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a-~viv-~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ++.||+++++.-+|.+...      .-.+..+.+-++.|.++-..+ .||+ .|-|.+..-.++--.+...+|+
T Consensus        82 l~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL  149 (436)
T COG0677          82 LKECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL  149 (436)
T ss_pred             cccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC
Confidence            8899999999888765432      122455666666777666444 3333 3788776654432233333544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.61  E-value=0.00044  Score=65.10  Aligned_cols=123  Identities=15%  Similarity=0.234  Sum_probs=71.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH---HhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD---ISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d---l~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+|||+|+|+ |.+|+.++..|...|+  +|.+++++..+.....   +........+......++ .++...+|+||++
T Consensus         4 ~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   79 (313)
T PRK06249          4 ETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRS-AEDMPPCDWVLVG   79 (313)
T ss_pred             cCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcc-hhhcCCCCEEEEE
Confidence            4579999999 9999999999999887  8999988652211110   000000011110001123 2457889999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehh
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TML  168 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~l  168 (332)
                      .-..+                ..+.++.+.... |++.|+...|=.+..-     .+.+.  +|+.+|++- +..
T Consensus        80 vK~~~----------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e-----~l~~~--~~~~~v~~g~~~~  131 (313)
T PRK06249         80 LKTTA----------------NALLAPLIPQVAAPDAKVLLLQNGLGVEE-----QLREI--LPAEHLLGGLCFI  131 (313)
T ss_pred             ecCCC----------------hHhHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHH--CCCCcEEEEeeeE
Confidence            53221                123333444333 6788888888776542     23333  577777654 443

>PLN02686 cinnamoyl-CoA reductase

Probab=97.60  E-value=0.00053  Score=65.97  Aligned_cols=177  Identities=13%  Similarity=0.083  Sum_probs=94.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcC---C-CCCeEEEEe----CCCCHHhhcC
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---D-TGAVVRGFL----GQPQLENALT   87 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~---~-~~~~v~~~~----~~~d~~~a~~   87 (332)
                      ..+.++|.|+||+|++|++++..|+..|+  +|+++..+.. .....++...   . ....+..+.    ...++.++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            34567999999999999999999999998  8877654431 1111222110   0 001222211    1123557789


Q ss_pred             CCcEEEEcCCCCCCCCC--ChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC-Cch--------HHHHHHHHHH--
Q 020049           88 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV-NST--------VPIAAEVFKK--  153 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~--~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~-~~~--------t~~~~~~~~~--  153 (332)
                      ++|.|+.+++.....+.  ....+...|+....++.+.+.+.. .. .+|.+|... ...        .....+-.+.  
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            99999998875432221  123445668899999999988652 33 344443321 000        0000000000  


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ..-.++...+|.+.+...++...+++..|++..-++ +.++|..
T Consensus       207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG  250 (367)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence            000011123556666666666666666666544442 5677764

>PRK08643 acetoin reductase; Validated

Probab=97.60  E-value=0.0036  Score=56.51  Aligned_cols=115  Identities=20%  Similarity=0.240  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      +++.|+||+|.+|..++..|++.|.  +|+++|.+.  ......++.+..  ..+..+. +-++.   .++       +.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  899999876  222333343321  1222111 11221   122       24


Q ss_pred             CCcEEEEcCCCCCC-CC--CCh---hhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRK-PG--MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~-~g--~~r---~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      ..|+||+++|.... +-  .+.   ...+..|+...    +.+.+.+.+..+++.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  140 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ  140 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence            68999999986421 11  111   22344555443    3344444433345667777653

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.001  Score=68.74  Aligned_cols=111  Identities=14%  Similarity=0.081  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC--------HHhhcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--------LENALTGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~--~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d--------~~~a~~~a   89 (332)
                      |||.|+||+|++|++++..|+.  .+.  +|++++++.......++.......++..+.+. +|        ..+.++++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~   78 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI   78 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence            5899999999999999999984  455  89999986522222222111000122221110 11        11234899


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                      |+||++++.... .....+....|+.....+++.+.+.....++.
T Consensus        79 D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~  122 (657)
T PRK07201         79 DHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATFHH  122 (657)
T ss_pred             CEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEE
Confidence            999999875422 22344566789999999999988764343333

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.60  E-value=0.0016  Score=59.57  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=75.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe----CCCCHHh------
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLEN------   84 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~~------   84 (332)
                      .++.+.+.|+|||+.+|..+|..|+.+|+  +|+|+.+++  +...+.++.+.. ...+..+.    ...+.+.      
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~   79 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK   79 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence            45567899999999999999999999999  999999987  566777777653 12222211    1112211      


Q ss_pred             -hcCCCcEEEEcCCCCCCCC------CChhhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecC
Q 020049           85 -ALTGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  138 (332)
Q Consensus        85 -a~~~aDiVi~~~g~~~~~g------~~r~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tN  138 (332)
                       ..-..|+.|..||...-..      .+-.+++.-|+.....+..    .|.+.. .+-||+++.
T Consensus        80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S  143 (265)
T COG0300          80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS  143 (265)
T ss_pred             hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence             1126899999999764321      1234556667655555544    444433 455666643

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.59  E-value=0.0031  Score=56.99  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      ++|.|+||+|.+|++++..|++.|+  +|+++|++.  ......++........+..+. +.++.   ..+       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  999999875  222222333211111222211 11221   112       24


Q ss_pred             CCcEEEEcCCCCCCCC---CChh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      ..|+||+++|.+....   .+..   ..+..|+..    .+.+.+.+.+..+++.++++|..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~  142 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK  142 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence            5799999998654221   2222   223445544    44555555544435667776654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.59  E-value=0.0011  Score=58.27  Aligned_cols=99  Identities=18%  Similarity=0.189  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cH-------------HH--HHHHhcCCCCCeEEEEe--
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP-------------GV--TADISHMDTGAVVRGFL--   77 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~-------------~~--~~dl~~~~~~~~v~~~~--   77 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +|+|+|.+.     +.             ..  ...+.+.....++..+.  
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gvg-~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGIG-KLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCC-EEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            358999999 99999999999999873 899999982     10             00  11122222223333221  


Q ss_pred             -CCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEE
Q 020049           78 -GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  135 (332)
Q Consensus        78 -~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv  135 (332)
                       ...++.+.++++|+||.+               ..|.+....+.+.+.+..+..+++.
T Consensus        99 i~~~~~~~~~~~~DlVi~a---------------~Dn~~~k~~l~~~~~~~~~~~~ii~  142 (200)
T TIGR02354        99 ITEENIDKFFKDADIVCEA---------------FDNAEAKAMLVNAVLEKYKDKYLIA  142 (200)
T ss_pred             CCHhHHHHHhcCCCEEEEC---------------CCCHHHHHHHHHHHHHHcCCCcEEE
Confidence             122345568999999998               3455555666666666655554444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=0.00084  Score=61.73  Aligned_cols=165  Identities=15%  Similarity=0.131  Sum_probs=102.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEE-EeCCCCHHhhcC--CCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVi~   94 (332)
                      |+|.|+|++||+|++....++.+....+|+.+|.-.-   ..-..++.+......++. +.......+.++  ..|.|+.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5899999999999999998887765557899998762   223344544322222332 111122335556  6899999


Q ss_pred             cCCCCC--CCCCChhhhHhhhHHHHHHHHHHHHhhCCC-cEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHH
Q 020049           95 PAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  171 (332)
Q Consensus        95 ~~g~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~-a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~  171 (332)
                      .|.-..  +.=....+++..|+-....+.+.++++... -.+.+.|--|..--..-...|-..+.+.|+--+..+.-.+.
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence            875321  111235688999999999999999999864 34555565443210000000113345666667776655566


Q ss_pred             HHHHHHHHHhCCCC
Q 020049          172 RANTFVAEVLGLDP  185 (332)
Q Consensus       172 r~~~~la~~l~v~~  185 (332)
                      .|.+...+.+|++.
T Consensus       161 ~lVray~~TYglp~  174 (340)
T COG1088         161 LLVRAYVRTYGLPA  174 (340)
T ss_pred             HHHHHHHHHcCCce
Confidence            67788888888764

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.56  E-value=0.0017  Score=58.70  Aligned_cols=116  Identities=15%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      .++|.|+||+|.+|..++..|+..|+  +|++.|+++  .......+.+..  .++..+. +-+|   ..++       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999888  899999876  222333343321  1222211 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  139 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP  139 (332)
                      ...|+||+++|.....   ..+   ....+..|+.....+.+.+.++.   ..+.|+++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            3579999998864211   111   23345567766666666665442   34566666653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.56  E-value=0.00057  Score=61.76  Aligned_cols=115  Identities=16%  Similarity=0.232  Sum_probs=68.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|+.++..|++.|.  +|++++.++  ......++.+..  ..+..+. .-+|.   .+++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  899999887  223333444332  2232221 11221   1222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|+||.++|.....   ..+   ....+..|+..    .+.+.+.+.+..+.+.|+++|.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss  144 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS  144 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence            3489999999864211   111   22334456665    5566666633344455665553

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.56  E-value=0.0018  Score=58.64  Aligned_cols=115  Identities=23%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE--EeCCCCHHhhc--------CC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG--FLGQPQLENAL--------TG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~--------~~   88 (332)
                      +++.|+||+|.+|..++..|++.|.  +|+++|++..  .....++...  ...+..  +....+..+++        ..
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~~~~   77 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAG--NAWTGALDVTDRAAWDAALADFAAATGGR   77 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4699999999999999999999987  8999998752  1122222211  111111  11111222333        34


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh---hCCCcEEEEecCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP  139 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~---~~p~a~viv~tNP  139 (332)
                      .|+||+++|......   .+   ....+..|+.....+.+.+.+   ..+.+.+++++..
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  137 (260)
T PRK08267         78 LDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA  137 (260)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence            599999998753221   11   233455677655555555433   2344556666543

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.54  E-value=0.005  Score=55.14  Aligned_cols=116  Identities=19%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc----CCCc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL----TGMD   90 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~----~~aD   90 (332)
                      ++|.|+||+|.+|..++..|+..|+  +|+++|+++  ......++.... ..++..+.. -+|   .++.+    +..|
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d   78 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALPD   78 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence            5899999999999999999999888  899999876  222333333221 123332211 122   22222    2459


Q ss_pred             EEEEcCCCCCC---CCCChh---hhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 020049           91 LVIIPAGVPRK---PGMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  139 (332)
Q Consensus        91 iVi~~~g~~~~---~g~~r~---~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP  139 (332)
                      ++|+++|....   .+.+..   +.+..|+.....+.+.+.++.   ..+.++++|..
T Consensus        79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            99999875321   122222   345567766666666655432   34566666543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.54  E-value=0.00062  Score=63.02  Aligned_cols=64  Identities=22%  Similarity=0.240  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||. |.+|.+++..|...|+  +|.++|.++. ...+.   ....   +..  .+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~---~~g~---~~~--~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAI---ERGL---VDE--ASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHH---HCCC---ccc--ccCCH-hHhcCCCEEEEcC
Confidence            58999999 9999999999998887  8999998752 11222   1111   111  12343 5689999999995

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.54  E-value=0.00065  Score=55.34  Aligned_cols=101  Identities=24%  Similarity=0.289  Sum_probs=57.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .+||.|||+ |.||.+++..|...|+  +|.-+-... ..-..++.+..  .....    .++.+.+++||+++++.  |
T Consensus        10 ~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iav--p   77 (127)
T PF10727_consen   10 RLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAV--P   77 (127)
T ss_dssp             --EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S---
T ss_pred             ccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEe--c
Confidence            479999999 9999999999999998  776664432 22223333321  11221    13467789999999994  1


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhh--C-CCcEEEEe--cCCCCchHHH
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLI--SNPVNSTVPI  146 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~--~-p~a~viv~--tNP~~~~t~~  146 (332)
                             +|       .+.++++++..+  . |+.+|+=.  +-+++++.++
T Consensus        78 -------Dd-------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   78 -------DD-------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             -------CC-------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred             -------hH-------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence                   11       456788888876  3 44433333  3667777653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.52  E-value=0.00072  Score=63.74  Aligned_cols=111  Identities=15%  Similarity=0.133  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEccCCc--H--------HH--HHH----HhcCC---------CCCeEEEEeCCCCHHhhc
Q 020049           32 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----ISHMD---------TGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        32 vG~~~a~~l~~~~~~~ei~L~D~~~~--~--------~~--~~d----l~~~~---------~~~~v~~~~~~~d~~~a~   86 (332)
                      ||+.+|..++..|+  +|+|+|.++.  .        +.  ..+    +....         ...+++... +.+.++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            57899999999998  9999999871  1        11  001    11111         013455421 22467889


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ++||+||.++              .++..+.+.+..++.+.++ ++++  +||.......-++    ..... +.|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la----~~~~~-p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQ----RHVAH-PERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHH----hhcCC-cccEEEE
Confidence            9999999995              7789999999999999984 6644  8888776653222    22222 3567776


Q ss_pred             e
Q 020049          166 T  166 (332)
Q Consensus       166 ~  166 (332)
                      .
T Consensus       137 H  137 (314)
T PRK08269        137 H  137 (314)
T ss_pred             e
Confidence            4

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.50  E-value=0.00048  Score=63.56  Aligned_cols=77  Identities=22%  Similarity=0.361  Sum_probs=52.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHH-------------HH-hcCCCCCeEEEEeCCCCHHhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-------------DI-SHMDTGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-------------dl-~~~~~~~~v~~~~~~~d~~~a~   86 (332)
                      +||+-||| |+||...+.-++..=+..+|.++|+++.+-.+.             |. .++. ..++- |  ++|.+.++
T Consensus         2 ~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdiekai   76 (481)
T KOG2666|consen    2 VKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKAI   76 (481)
T ss_pred             ceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHHh
Confidence            69999999 999998877666553334999999987221111             11 1111 12333 3  56889999


Q ss_pred             CCCcEEEEcCCCCCCC
Q 020049           87 TGMDLVIIPAGVPRKP  102 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~  102 (332)
                      +.||+|++....|.+.
T Consensus        77 ~eadlvfisvntptkt   92 (481)
T KOG2666|consen   77 KEADLVFISVNTPTKT   92 (481)
T ss_pred             hhcceEEEEecCCccc
Confidence            9999999998887653

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.50  E-value=0.0012  Score=64.14  Aligned_cols=113  Identities=18%  Similarity=0.150  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--H--HHHHHhcCCCCCe-EEE-EeCCCCHHhhcC----C
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAV-VRG-FLGQPQLENALT----G   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~--~~~dl~~~~~~~~-v~~-~~~~~d~~~a~~----~   88 (332)
                      +.+||.|+||+|++|+.++..|+..|+  +|++++++...  .  ...++........ +.. .....++.++++    +
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~  136 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP  136 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence            457999999999999999999999888  89999886511  0  1111111110111 111 111123445566    5


Q ss_pred             CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +|+||.+++.+...   ..+.+..|.....++.+.+++..-.- +|++|
T Consensus       137 ~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r-~V~iS  181 (390)
T PLN02657        137 VDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKH-FVLLS  181 (390)
T ss_pred             CcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence            99999987643211   12334667888888888888765443 44443

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.50  E-value=0.00067  Score=63.10  Aligned_cols=109  Identities=11%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhh----cCCCcEEEEcCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV   98 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----~~~aDiVi~~~g~   98 (332)
                      |.|+||+|++|++++..|...|+. +|+++|..........+........+..   ...++..    +.++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGIT-DILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCc-eEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            679999999999999999988852 6888886542111111111000011110   1122222    2589999999986


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +.....+.......|+.....+++.+.+...  .+|.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            5332233455667899999999999887653  344444

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.49  E-value=0.0014  Score=63.09  Aligned_cols=75  Identities=24%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCC-eEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||.|||| |+||+.+|..|++.+- .+|++.|+... ...+.+..+....+ .+... ....+.+++++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence            468999999 9999999999999875 49999998742 12222221111111 11111 12345688999999999974

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.0036  Score=56.60  Aligned_cols=36  Identities=31%  Similarity=0.523  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.++|.|+||+|.+|+.++..|++.|+  +|+++++++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446999999999999999999999988  899999875

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.48  E-value=0.0037  Score=56.00  Aligned_cols=114  Identities=18%  Similarity=0.268  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|++.|+  +|++++++..  .....++.+   ...+..+.. -.|   +..++       
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERF   79 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999988  8999998762  222233332   122222211 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ...|+||.++|......    .+   ..+.+..|+.....+.+.+.++.   ..+.+|+++.
T Consensus        80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  141 (251)
T PRK07231         80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVAS  141 (251)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            35799999998642111    11   12334556554444444444332   2344555543

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0026  Score=58.25  Aligned_cols=113  Identities=12%  Similarity=0.019  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~a   89 (332)
                      ++|.|+||+|++|+.++..|+..|.  .|++++.++..  ..++.... ...+..+. .-+|.   .++       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDA--LDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999887  88998876511  11121111 11222111 11232   122       3457


Q ss_pred             cEEEEcCCCCCCCC-C--Ch---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           90 DLVIIPAGVPRKPG-M--TR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        90 DiVi~~~g~~~~~g-~--~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      |+||+++|...... .  +.   ...+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcC
Confidence            99999998753221 1  11   234456777777777775332   22345555543

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.48  E-value=0.0005  Score=63.23  Aligned_cols=95  Identities=23%  Similarity=0.305  Sum_probs=66.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC--cEEEEcCCCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP   99 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a--DiVi~~~g~~   99 (332)
                      ||.|+||+|++|++++..|+..|+  +|++++...     .|+.+            ..++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  899988641     11111            12345667666  9999998864


Q ss_pred             CCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049          100 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus       100 ~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ....  .........|+....++++.+.+...  .+|++|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  22345567889999999999876643  344443

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0046  Score=56.53  Aligned_cols=159  Identities=18%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|++|+.++..|+..|+  +|++++.+.  ......++.......++..+. .-+|   ....++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999998  899999875  222333333221112222211 1122   222233      


Q ss_pred             -CCcEEEEcCCCCCCC----CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 -GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~----g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                       ..|++|+++|.....    ..+.   ...+..|......+.+.+.++   ...+.++++|.....            .+
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~------------~~  152 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS------------NT  152 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc------------CC
Confidence             679999998853221    1122   223445666655555544333   234566666542211            11


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+......+...+++.++  +..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~  188 (276)
T PRK05875        153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR  188 (276)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            22222344444344455566666654  4456655554

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.0056  Score=56.05  Aligned_cols=116  Identities=11%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHHh---------hcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLEN---------ALT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~~---------a~~   87 (332)
                      .+.+.|+||+|.+|+.++..|+..|+  +|++++++..  .....++.+......+..+. +-+|.++         .+.
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   80 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence            34689999999999999999999888  8999987652  22222222221112233221 1223211         124


Q ss_pred             CCcEEEEcCCCCCCC--C-CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKP--G-MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~--g-~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                      ..|+||.++|.....  . .+   ..+.+..|+.....+.+.    +++... +.++++|.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vsS  140 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINISS  140 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEECc
Confidence            579999998864321  1 11   123345666655555554    443333 34555543

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0013  Score=59.13  Aligned_cols=116  Identities=17%  Similarity=0.227  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-----   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-----   86 (332)
                      +.++|.|+||+|++|.+++..|+..|+  +|++++++..   .....++....  .++..+. .-++.   ..++     
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   80 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTARE   80 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998888  8888887641   22223333221  1222111 11232   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecC
Q 020049           87 --TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISN  138 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tN  138 (332)
                        .+.|+||.++|.......+....+..|......+++.+.++.. ++.+|++|.
T Consensus        81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         81 EFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             hCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence              3689999998754222222233445677777777777776643 455665643

>PRK05865 hypothetical protein; Provisional

Probab=97.45  E-value=0.00083  Score=70.97  Aligned_cols=104  Identities=17%  Similarity=0.159  Sum_probs=71.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |||.|+||+|++|++++..|+..|+  +|+.+|.+....    + ... ...+.. .....++.++++++|+||++++..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~-~~~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----W-PSS-ADFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----c-ccC-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999999888  999999764210    1 111 011221 111234567789999999998643


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      ..       ....|+....++++.+.+.... .+|++|.+.
T Consensus        73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            21       3467888888999988876533 566666654

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0029  Score=56.99  Aligned_cols=156  Identities=13%  Similarity=0.086  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  ......++....  .++..+. .-++   ..+.++      
T Consensus         7 ~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          7 GKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998887  899999876  222333343322  2222211 1122   223333      


Q ss_pred             -CCcEEEEcCCCCCCC----CCChh---hhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           88 -GMDLVIIPAGVPRKP----GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~----g~~r~---~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ..|+||..+|.....    ..+..   ..+.-|+.....+.    +.+.+. ..+.++++|.....            .
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS~~~~------------~  149 (253)
T PRK06172         83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTASVAGL------------G  149 (253)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhc------------c
Confidence             459999999864321    12222   23445655544333    334322 23456666543211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      +.+..-.++.+......+.+.++..+.  +..+++..+.
T Consensus       150 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~~i~v~~i~  186 (253)
T PRK06172        150 AAPKMSIYAASKHAVIGLTKSAAIEYA--KKGIRVNAVC  186 (253)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            122223344443333445666666663  4556555543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.44  E-value=0.0053  Score=55.55  Aligned_cols=115  Identities=14%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++|.+..  +....++....  .++..+. +-+|.+   +.       +
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999888  8999998652  22222232211  1222211 112321   11       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh----CCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~----~p~a~viv~tN  138 (332)
                      ...|.||+++|......   .+   ....+..|+.....+.+.+.++    .+.+.++++|.
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            46799999988632111   11   2234567877777777766554    23456666655

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.44  E-value=0.00085  Score=64.81  Aligned_cols=53  Identities=19%  Similarity=0.354  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||+|||+.|.+|..++..|...|+  +|.++|.+..                      ++.++++++||+||++.
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            37899999459999999999999988  8999997420                      13357789999999995

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=97.44  E-value=0.00087  Score=60.35  Aligned_cols=78  Identities=10%  Similarity=0.050  Sum_probs=52.9

Q ss_pred             CchhhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 020049          241 GSATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  316 (332)
Q Consensus       241 g~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa  316 (332)
                      ++..|+     ..++++|.+|.+   .++.+ +.++|.+   |+|.++++||+|+++|+.++.. ++|++..+++++...
T Consensus       134 ~~~~~a-----~~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~  204 (232)
T PF11975_consen  134 GSGEYA-----EAAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK  204 (232)
T ss_dssp             TTSCHH-----HHHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred             cccchH-----HHHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence            455555     355555677764   35555 4678986   7899999999999999999776 699999999888776


Q ss_pred             HHHHHHHHHhh
Q 020049          317 KELAGSIQKGI  327 (332)
Q Consensus       317 ~~l~~~~~~~~  327 (332)
                      ..-+-.++.++
T Consensus       205 ~~e~L~veAa~  215 (232)
T PF11975_consen  205 AYERLTVEAAL  215 (232)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66665555543

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>PRK12320 hypothetical protein; Provisional

Probab=97.44  E-value=0.001  Score=68.81  Aligned_cols=100  Identities=13%  Similarity=0.105  Sum_probs=66.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |||.|+||+|++|++++..|+..|+  +|+.+|.....     ..+... ..+.. +. ...+.++++++|+||++++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~v-e~v~~Dl~-d~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRV-DYVCASLR-NPVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCc-eEEEccCC-CHHHHHHhcCCCEEEEcCccC
Confidence            5899999999999999999999888  99999975421     111110 11111 11 112456678999999998653


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .  ..    ....|+....++++.+++...  .+|.+|
T Consensus        72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            1  11    124688888999998887653  455544

>PRK05717 oxidoreductase; Validated

Probab=97.44  E-value=0.0017  Score=58.69  Aligned_cols=146  Identities=14%  Similarity=0.131  Sum_probs=82.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~   88 (332)
                      .++|.|+||+|++|++++..|+..|.  +|+++|.++...... ..+..  ..+..+. .-++.   .++       +..
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALG--ENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999887  899999865221111 11111  1111111 11221   111       234


Q ss_pred             CcEEEEcCCCCCCCC-----CC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g-----~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      .|++|.++|......     .+   ....+..|+.....+.+.+.++.  ..+.+|++|......            +.+
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~------------~~~  152 (255)
T PRK05717         85 LDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQ------------SEP  152 (255)
T ss_pred             CCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcC------------CCC
Confidence            799999998653211     11   22445677777777777765432  245566665432211            122


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhC
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      ..-.++.+......+.+.+++.++
T Consensus       153 ~~~~Y~~sKaa~~~~~~~la~~~~  176 (255)
T PRK05717        153 DTEAYAASKGGLLALTHALAISLG  176 (255)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhc
Confidence            223456544344456677777775

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.43  E-value=0.0019  Score=58.42  Aligned_cols=152  Identities=16%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE-EeCCCCHHhh-------cCCCc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMD   90 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-------~~~aD   90 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.+..  .....++... . ..+.. .....+.+++       +...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-A-IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-e-EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999998  9999998762  2222222111 0 01110 1111122222       24689


Q ss_pred             EEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh----CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           91 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        91 iVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~----~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      ++|+++|......   .+   ....+..|+.....+.+.+.++    .+++.|++++......            +.|..
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~  150 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRR------------GEALV  150 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCC------------CCCCC
Confidence            9999988642111   11   2234566766666666665433    2345666665532111            22333


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCce
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDV  190 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~~  190 (332)
                      -.++.+......+.+.++..+.  +..+++
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v  178 (257)
T PRK07067        151 SHYCATKAAVISYTQSAALALI--RHGINV  178 (257)
T ss_pred             chhhhhHHHHHHHHHHHHHHhc--ccCeEE
Confidence            3455544333445566666553  344543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.43  E-value=0.0011  Score=60.66  Aligned_cols=96  Identities=14%  Similarity=0.157  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +|||+|||+ |.+|+.++..|...+. ..++.++|+++..  ...+.+..   .+..   +.+..+.++++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence            579999999 9999999999988762 2379999987522  12222211   1121   2344677899999999841 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                                     -..+.++.+.+..+. +..|+..+|-+.
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           223445555555444 456666667553

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.43  E-value=0.00098  Score=62.08  Aligned_cols=65  Identities=18%  Similarity=0.263  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .|||+|||. |.+|+.++..|...|+  +|.++|++....  ..+....    ...   ..++++++++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            368999999 9999999999998887  899999876221  1122211    111   235678889999999984

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.43  E-value=0.0041  Score=56.39  Aligned_cols=74  Identities=18%  Similarity=0.200  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHh-------hcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------ALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a~~   87 (332)
                      |+|.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.+..   .+..+. +-+|   .++       .+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999998  899999876  223333443221   111111 1122   222       234


Q ss_pred             CCcEEEEcCCCC
Q 020049           88 GMDLVIIPAGVP   99 (332)
Q Consensus        88 ~aDiVi~~~g~~   99 (332)
                      ..|++|.++|..
T Consensus        76 ~id~li~naG~~   87 (259)
T PRK08340         76 GIDALVWNAGNV   87 (259)
T ss_pred             CCCEEEECCCCC
Confidence            689999999864

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.43  E-value=0.0067  Score=54.47  Aligned_cols=157  Identities=15%  Similarity=0.120  Sum_probs=94.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCC-------CCHHhhcCCCcE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ-------PQLENALTGMDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~-------~d~~~a~~~aDi   91 (332)
                      +-+.|+||++.+|..+|..|...|+  .|+|..+++  ++..+.++.+....+..-.....       ..+.+.+...|+
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            4589999999999999999999999  999999987  55666666641111111111111       113456788999


Q ss_pred             EEEcCCCCCCCC------CChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           92 VIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        92 Vi~~~g~~~~~g------~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      +|..||......      .+...++..|+..+......+-..   ...+.||+.+.-.+..            .||...+
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~------------~y~~~~v  152 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRY------------PYPGGAV  152 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccc------------cCCCCcc
Confidence            999999764321      124556677877666555544322   1356788887655433            2566778


Q ss_pred             EEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +|-|.-....|..-+-+.+  ....|++..|
T Consensus       153 Y~ATK~aV~~fs~~LR~e~--~g~~IRVt~I  181 (246)
T COG4221         153 YGATKAAVRAFSLGLRQEL--AGTGIRVTVI  181 (246)
T ss_pred             chhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence            8776433322222222222  2355655544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.42  E-value=0.0013  Score=61.78  Aligned_cols=67  Identities=25%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||+ |.+|..++..|...++..+|.++|+++. ...+.   ...  .....   ..+.++++++||+||++.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~---~~g--~~~~~---~~~~~~~~~~aDvViiav   74 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARAR---ELG--LGDRV---TTSAAEAVKGADLVILCV   74 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH---hCC--CCcee---cCCHHHHhcCCCEEEECC
Confidence            68999998 9999999999988876558999998762 11222   111  11111   224567889999999995

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.42  E-value=0.0021  Score=58.08  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.+||+|||+ |.+|..++..++..+.  ..+++.++.+.. ....++.+..   .+..   +.|+++.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence            4579999999 9999999998887652  334777876421 1122233221   1222   235678889999999984

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.41  E-value=0.0015  Score=61.13  Aligned_cols=95  Identities=19%  Similarity=0.224  Sum_probs=60.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+|||. |.+|++++..|...++  +|.++|+++..  +..+.....    .......++.+.++++|+|+++.  | 
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p-   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--P-   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--C-
Confidence            58999999 9999999999999887  99999987622  222332211    11111123344567899999984  1 


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                                   ...+.++++.+.... ++.+||..||..
T Consensus        69 -------------~~~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        69 -------------HGIVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             -------------chHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                         013445555555554 566777776654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.40  E-value=0.0016  Score=64.23  Aligned_cols=66  Identities=24%  Similarity=0.374  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+||||+|.+|..++..|...|+  +|.++|.++...  .++.... .  +..   +++..+++.+||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~-g--v~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL-G--VEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc-C--Cee---ccCHHHHhccCCEEEEec
Confidence            6899998559999999999998887  899999875221  1111111 1  121   345678899999999985

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0036  Score=57.44  Aligned_cols=114  Identities=13%  Similarity=0.092  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~   88 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|++++++...  ..++.... ...+..+. .-+|   ..+++       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~--~~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAA--RADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHH--HHHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999888  89999987521  11222211 11122111 1122   22222       35


Q ss_pred             CcEEEEcCCCCCC---CCCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           89 MDLVIIPAGVPRK---PGMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        89 aDiVi~~~g~~~~---~g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      .|+||+++|....   ...+.   ...+..|+.....+.+.+.++   ...+.+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence            7999999986421   11222   233566776666666664432   22345666654

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0031  Score=56.29  Aligned_cols=147  Identities=14%  Similarity=0.085  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      .++|.|+||+|.+|+.++..|+..|+  +++++..+.   ......++....  .++..+. .-++   +++++      
T Consensus         5 ~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (245)
T PRK12937          5 NKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETA   80 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999998  788877654   122233333322  2223221 1122   22333      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                       ...|+||+++|......   .+   ....+..|+.....+.+.+.+.. +.+.++++|.....            .+.|
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~------------~~~~  148 (245)
T PRK12937         81 FGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA------------LPLP  148 (245)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc------------CCCC
Confidence             36899999998643211   11   22334566665555555554432 45566666542211            1233


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhC
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      ....++.+......+...+++.++
T Consensus       149 ~~~~Y~~sK~a~~~~~~~~a~~~~  172 (245)
T PRK12937        149 GYGPYAASKAAVEGLVHVLANELR  172 (245)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhh
Confidence            334455543333345555666554

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0079  Score=55.14  Aligned_cols=159  Identities=15%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL-GQPQ---LENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~   86 (332)
                      .+++.|+||+|.+|+.++..|+..|.  +|++++++..         +..+.++....  .++..+. .-++   .+..+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHH
Confidence            35799999999999999999999887  8999998641         11222333221  1222111 1112   22223


Q ss_pred             -------CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHH
Q 020049           87 -------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        87 -------~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                             ...|++|+++|.....   ..+.   ...+..|+.....+.+.+..+   ...+.++++|.+....       
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~-------  154 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLD-------  154 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcc-------
Confidence                   3679999999864211   1222   223445655555555555433   2346677666543221       


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                         ...++..-.++.+.....++...++..++  +..|++..+.
T Consensus       155 ---~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~  193 (273)
T PRK08278        155 ---PKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW  193 (273)
T ss_pred             ---ccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence               01123334566665555667777777776  4456555443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.39  E-value=0.0015  Score=60.66  Aligned_cols=76  Identities=24%  Similarity=0.321  Sum_probs=53.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+..||+|+|| |.+|.+++..|...|. .+|.++|++.  .++.+.++.+..  +...... ..++++.++++|+||.+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~-~~~~~~~~~~aDiVIna  199 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARF--PAARATA-GSDLAAALAAADGLVHA  199 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe-ccchHhhhCCCCEEEEC
Confidence            34468999999 9999999999998875 4799999986  344555554432  1122221 23445678999999998


Q ss_pred             --CCC
Q 020049           96 --AGV   98 (332)
Q Consensus        96 --~g~   98 (332)
                        +|+
T Consensus       200 Tp~Gm  204 (284)
T PRK12549        200 TPTGM  204 (284)
T ss_pred             CcCCC
Confidence              444

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.38  E-value=0.0011  Score=63.31  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEE----EeCCCCHHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRG----FLGQPQLENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aDiVi   93 (332)
                      ++.++.|+||+|++|.+++..|.+.+...+|.++|.... ...-.+..... ...++.    +....+...|+.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~-~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFR-SGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhccc-CCceeEEecchhhhhhhhhhccCc-eEE
Confidence            345899999999999999999999885569999998762 11111111101 122222    11234567899999 666


Q ss_pred             EcCCCC-CCCCC-ChhhhHhhhHHHHHHHHHHHHhhCCC
Q 020049           94 IPAGVP-RKPGM-TRDDLFNINAGIVRTLCEGIAKCCPN  130 (332)
Q Consensus        94 ~~~g~~-~~~g~-~r~~~~~~n~~~~~~i~~~i~~~~p~  130 (332)
                      +++..+ ..... .+.....-|+...+.+.+.+.+.+-+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~  119 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK  119 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence            665432 22222 35556678999999999999987643

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0021  Score=57.77  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++|.|+||+|.+|+.++..|++.|.  +|+++++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999888  899999865

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.38  E-value=0.0014  Score=58.99  Aligned_cols=114  Identities=13%  Similarity=0.219  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|++++..|+..|+  +|++++++.  ......++....  .++..+. +-+|   +.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999888  999999876  223333443221  2222211 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      .+.|+||.++|......   .+   ..+.+..|+..    .+.+.+.+.+.. ...++++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG-GGRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            36899999988643211   11   12233445544    556666665543 334555544

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.37  E-value=0.0012  Score=60.43  Aligned_cols=94  Identities=14%  Similarity=0.257  Sum_probs=59.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-ccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||++||. |.||+.++..|+..++  ..+|+.+ |+++.+  ...+....    +..   ..+..+++++||+||++..
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVil~v~   70 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKT---AASNTEVVKSSDVIILAVK   70 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEE---eCChHHHHhcCCEEEEEEC
Confidence            68999998 9999999999988775  4578888 765422  22233221    222   1244677899999999951


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                       |               ..+.++.+.+..+. |+.+||..++..
T Consensus        71 -~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~   98 (266)
T PLN02688         71 -P---------------QVVKDVLTELRPLLSKDKLLVSVAAGI   98 (266)
T ss_pred             -c---------------HHHHHHHHHHHhhcCCCCEEEEecCCC
Confidence             1               22344444554444 566666555554

>PRK07680 late competence protein ComER; Validated

Probab=97.37  E-value=0.0018  Score=59.64  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+|||+ |.+|+.++..|...+.  ..+|.++|++...  ...+.+..  ..+...   .+..++++++|+||++.. 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence            58999999 9999999999988773  2479999987522  12222211  122322   245677899999999951 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                                     -..+.++++.+..+. ++.+|+.+++++.
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           122344455555444 5677787888774

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0047  Score=56.81  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      .+.+.|+||+|.+|+.++..|+..|.  +|++.|.++  +.....++....  .++..+. .-+|   +.++       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34699999999999999999999998  899999876  222333443221  2222211 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|++|+.+|.....   ..+.   ...+..|+....    .+.+.+.+....+.|++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   1222   223345554444    44444444443456666654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.37  E-value=0.001  Score=61.88  Aligned_cols=63  Identities=14%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ||+|||. |.+|+.++..|+..|+  +|.++|++...  ...+.....    ..   .++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~~---~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----VT---AETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----cc---cCCHHHHHhcCCEEEEec
Confidence            5999999 9999999999999888  99999987521  222332211    11   234578899999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.0046  Score=54.96  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~   87 (332)
                      ++|.|+||+|.+|+.++..|+..|.  +|+++++++  ......++...   ..+..+.. -++   +.+++       .
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999998887  899999876  22223334322   12222111 122   22222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCChh---hhHhhhHHHHHHHHHHHHhh--CCCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~r~---~~~~~n~~~~~~i~~~i~~~--~p~a~viv~tNP  139 (332)
                      ..|+||+++|.....   ..+..   +.+..|+.....+.+.+.+.  ...+.+++++..
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            789999998754321   12222   23445555444444444332  234556666653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.37  E-value=0.0016  Score=58.95  Aligned_cols=110  Identities=15%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-E-EeC-CCCHHhhc-CCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-G-FLG-QPQLENAL-TGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~-~~~-~~d~~~a~-~~aDiVi~~   95 (332)
                      ++||.|+||+|++|+.++..|+..++  +|+.+.++....... +.... ...+. . ... ..++.+++ .++|+||++
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~~~-~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQDP-SLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-cccCC-ceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            47899999999999999999998887  888776654221111 11111 11111 1 111 12344566 689999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      +|.....+.  ...+..|......+++.+.+.... .++++
T Consensus        93 ~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i  130 (251)
T PLN00141         93 TGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV  130 (251)
T ss_pred             CCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence            775422111  111234555567777777765443 34444

>PRK09135 pteridine reductase; Provisional

Probab=97.36  E-value=0.0046  Score=55.23  Aligned_cols=147  Identities=14%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      ++|.|+||+|++|++++..|+..|.  +|+++|...   ......++.+... ..+..+. +-+|.   ..++       
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999888  999999754   2222233433211 1122111 11232   2223       


Q ss_pred             CCCcEEEEcCCCCCC--CC-C---ChhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           87 TGMDLVIIPAGVPRK--PG-M---TRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~--~g-~---~r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      ...|+||.++|....  .. .   +..+.+..|+.....+.+.+.++..  .+.++..+.    ..        ....++
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~  151 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITD----IH--------AERPLK  151 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeC----hh--------hcCCCC
Confidence            357999999885321  11 1   1234566777777777776654421  334443332    10        112234


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhC
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      +...++.+......+...+++.++
T Consensus       152 ~~~~Y~~sK~~~~~~~~~l~~~~~  175 (249)
T PRK09135        152 GYPVYCAAKAALEMLTRSLALELA  175 (249)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHC
Confidence            444566655444555566666664

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0066  Score=54.95  Aligned_cols=157  Identities=18%  Similarity=0.170  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  .+....++.......++..+. .-+|   ..+++       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999998  899999876  233334443311112222211 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC--C-CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKP--G-MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~--g-~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|.++|.....  . .+.   ...+..|+.....+.+.    +.+. ..+.||++|......            +
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  151 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIASTHAFK------------I  151 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECChhhcc------------C
Confidence            3689999999864211  1 112   22334555544444444    4332 345666665432111            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.+++.+.  +..|++..+
T Consensus       152 ~~~~~~Y~~sKaa~~~~~~~la~el~--~~gIrvn~v  186 (260)
T PRK07063        152 IPGCFPYPVAKHGLLGLTRALGIEYA--ARNVRVNAI  186 (260)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            22222234433333445666776664  445554444

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0077  Score=54.76  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=84.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------   85 (332)
                      +.+++.|+||+|++|.+++..|+..|.  +|+++|++.  ......++....  ..+..+. .-++.+   ++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999888  999999876  222333343221  2222211 122322   11       


Q ss_pred             cCCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHH----hhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           86 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~----~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      +...|+||..+|.....   ..+   ....+..|......+.+...    +..+.+.+++++.-....            
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~------------  152 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRL------------  152 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccC------------
Confidence            24689999998853221   111   22334556555555554443    334556666666532211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+..-.++.+......+...++..+.  + .+.+..+
T Consensus       153 ~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~-~i~v~~i  187 (263)
T PRK07814        153 AGRGFAAYGTAKAALAHYTRLAALDLC--P-RIRVNAI  187 (263)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHC--C-CceEEEE
Confidence            122233455543333445566666654  3 3544444

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.34  E-value=0.0029  Score=56.93  Aligned_cols=34  Identities=15%  Similarity=0.123  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |+|.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999888  899999875

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.32  E-value=0.00032  Score=62.25  Aligned_cols=165  Identities=18%  Similarity=0.139  Sum_probs=93.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCC--cEEEEcCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRG--FLGQPQLENALTGM--DLVIIPAG   97 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~a--DiVi~~~g   97 (332)
                      |.|+||+|++|+.++..|+..++  +++.+.... .........  .  .....  .....++.+++++.  |.||.+++
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~--~--~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~   74 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL--N--VEFVIGDLTDKEQLEKLLEKANIDVVIHLAA   74 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT--T--EEEEESETTSHHHHHHHHHHHTESEEEEEBS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc--e--EEEEEeeccccccccccccccCceEEEEeec
Confidence            78999999999999999999998  655554444 222222111  1  11111  11112455667777  99999987


Q ss_pred             CCC--CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           98 VPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        98 ~~~--~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      .+.  .......+....|+...+.+.+.+.+... ..+|..+.. +.....  ...+.....+.+...+|.+.....++.
T Consensus        75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS~~~y~~~~--~~~~~e~~~~~~~~~Y~~~K~~~e~~~  151 (236)
T PF01370_consen   75 FSSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSSASVYGDPD--GEPIDEDSPINPLSPYGASKRAAEELL  151 (236)
T ss_dssp             SSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEGGGGTSSS--SSSBETTSGCCHSSHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccc-cccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            653  11134566778899999999999998876 344444331 111000  000000000111223555555556666


Q ss_pred             HHHHHHhCCCCCCCc-eeEEEec
Q 020049          175 TFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       175 ~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ..++++.+++...++ ..++|.+
T Consensus       152 ~~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  152 RDYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHHTSEEEEEEESEEESTT
T ss_pred             ccccccccccccccccccccccc
Confidence            667777676655553 4466655

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.005  Score=55.96  Aligned_cols=153  Identities=15%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++.     .++..+. +-+|   .+++       +
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999998  9999998762  22222221     1122111 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC--CCCh---hhhHhhhHHHHHHHHHHHHhh--CCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           87 TGMDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~--g~~r---~~~~~~n~~~~~~i~~~i~~~--~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      ...|++|..+|.....  ..+.   ...+..|+.....+.+.+..+  .+.+.||+++.-....            +.+.
T Consensus        79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~  146 (261)
T PRK08265         79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKF------------AQTG  146 (261)
T ss_pred             CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhcc------------CCCC
Confidence            4679999999864322  1222   223344655444444443332  3456666665422111            1222


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.++..+.  +..+++..+
T Consensus       147 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  178 (261)
T PRK08265        147 RWLYPASKAAIRQLTRSMAMDLA--PDGIRVNSV  178 (261)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence            22344433333445566666654  445554444

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.32  E-value=0.0017  Score=60.40  Aligned_cols=110  Identities=17%  Similarity=0.103  Sum_probs=67.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcC--CCcEEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQP---QLENALT--GMDLVI   93 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~--~aDiVi   93 (332)
                      ||.|+||+|++|+.++..|.+.++  +|+++|....  ......+...   ..+..+. ..+   ++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999999887  8888886431  1111111111   1222111 111   2334443  689999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .++|.....  .....+.+..|+.....+++.+.++.... ++++|
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~s  120 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK-FIFSS  120 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE-EEEec
Confidence            999864321  12234456788999999999888765443 34443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.32  E-value=0.01  Score=53.33  Aligned_cols=101  Identities=22%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCCHH---h-------hc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQLE---N-------AL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~~---~-------a~   86 (332)
                      ++|.|+||+|++|+.++..|+..|.  +|+++|.+..   .....++....  .++..+. .-++..   +       .+
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPDDEELAATQQELRALG--VEVIFFPADVADLSAHEAMLDAAQAAW   78 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999987  8999997542   12222232221  1222211 112321   1       12


Q ss_pred             CCCcEEEEcCCCCCC---C--CCCh---hhhHhhhHHHHHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPRK---P--GMTR---DDLFNINAGIVRTLCEGIA  125 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~---~--g~~r---~~~~~~n~~~~~~i~~~i~  125 (332)
                      ...|+||+++|.+..   +  ..+.   .+.+..|+.....+.+.+.
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  125 (256)
T PRK12745         79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVA  125 (256)
T ss_pred             CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHH
Confidence            468999999986421   1  1122   2334556655555544443

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.31  E-value=0.0037  Score=55.99  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (332)
                      .++|.|+||+|++|+.++..|+..|+  +|+++|.+.  ......++....  .++..+.. -.|   .++++       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999888  899999876  222233343321  12222111 122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      ...|+||+.+|......   .+.   ...+..|+.....+.+.+.+.   .+.+.+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECc
Confidence            35899999988642211   122   223456666666555554422   23345555554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.30  E-value=0.0021  Score=61.78  Aligned_cols=68  Identities=21%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||. |.||.+++..|...|+  ++.++|.+........-.....   ...  .++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence            37999999 9999999999999888  7788887762211111111111   111  1346678899999999995

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.01  Score=53.44  Aligned_cols=78  Identities=15%  Similarity=0.186  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE--EeCCCCHHhhcC-CCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG--FLGQPQLENALT-GMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~-~aDiVi~~   95 (332)
                      ++|.|+||+|.+|+.++..|++.|.  ++++.+.+..  .....+.........+..  .....++..++. +.|+||++
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            4799999999999999999999887  8888887652  111111221111111111  111112334444 89999999


Q ss_pred             CCCCC
Q 020049           96 AGVPR  100 (332)
Q Consensus        96 ~g~~~  100 (332)
                      +|...
T Consensus        81 ag~~~   85 (257)
T PRK09291         81 AGIGE   85 (257)
T ss_pred             CCcCC
Confidence            98653

>PRK07069 short chain dehydrogenase; Validated

Probab=97.29  E-value=0.014  Score=52.24  Aligned_cols=114  Identities=22%  Similarity=0.279  Sum_probs=66.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC-C--cHHHHHHHhcCCCCCeEEEEe-CCCC---HH-------hhcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT   87 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~-~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~~   87 (332)
                      ||.|+||+|.+|.+++..|+..|.  +|++.|.+ +  ......++........+..+. .-+|   +.       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999999888  89999987 3  222333333221111111110 1122   11       2235


Q ss_pred             CCcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ..|+||..+|.....   ..+.   ...+..|+.    ..+.+.+.+++... +.|+++|.
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss  138 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS  138 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence            689999999865321   1121   223455665    66777777775543 45555554

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.29  E-value=0.0098  Score=53.37  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=69.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCC-CC----------
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQ-PQ----------   81 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~-~d----------   81 (332)
                      +..+.++|.|+|++|++|..++..|+..|.  +|+++|++.  ......++.+... ...+.....+ .+          
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   85 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADT   85 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHH
Confidence            345567899999999999999999999887  999999876  2233344543321 1111111101 11          


Q ss_pred             HHhhcCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           82 LENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        82 ~~~a~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      +.+.+...|+||.++|....  +  ..+.   ...+..|+.....+.+.+.++   .+...|++.+.
T Consensus        86 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss  152 (247)
T PRK08945         86 IEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSS  152 (247)
T ss_pred             HHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            12334568999999876322  1  2222   233456666544444444322   24455666654

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.29  E-value=0.0023  Score=56.78  Aligned_cols=115  Identities=16%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE--EeCCCCHHhh-------cCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG--FLGQPQLENA-------LTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~   88 (332)
                      .++|.|+||+|.+|+.++..|++.|.  +|+++|++..  .....++....  ..+..  .....+++++       +..
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADA--LRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcC--ceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            45899999999999999999999888  8999998762  22223333221  11111  1111122222       236


Q ss_pred             CcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      .|+||..+|......   .+.   .+.+..|......+.+.+.+.   .+...+++++.
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            899999987542111   111   222345555555555544322   23445666554

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.28  E-value=0.0032  Score=58.25  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..|||+|||+ |.+|.+++..|+..+  ...+|+.+|++.. ....++....   .+..   +.+..++.++||+||++.
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAM   73 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEe
Confidence            4579999999 999999999998876  2248899987541 1223332211   1222   224467789999999985

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.28  E-value=0.0072  Score=53.90  Aligned_cols=117  Identities=18%  Similarity=0.245  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++++++.  ......++...  ...+..+.. -++   +.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999888  899999876  22223334322  123332211 122   22223       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~  140 (332)
                      .+.|+||+++|......   .+.   ...+..|+.....+.+.+..+   ...+.+++++...
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~  145 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTA  145 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchh
Confidence            37999999988643211   121   223455655444444444432   2234455555543

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.022  Score=51.94  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCH----------HhhcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~~~   88 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++++++  ......++.............+-+|.          .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3799999999999999999999887  899999876  22233334322111111000011121          122356


Q ss_pred             CcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCC
Q 020049           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV  140 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~  140 (332)
                      .|+||+++|......   .+.   ...+..|+.....+.+.+    .+....+.|++++...
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            899999998643211   122   233455665555555544    3222345666666543

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0045  Score=56.43  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=66.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++|++.  ......++....  ..+..+. +-++   ...++       
T Consensus         9 ~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          9 GKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998888  899999875  222223333221  1111111 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV  140 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~  140 (332)
                      ...|++|..+|.....   ..+.   ...+..|+.....+.+...++-  +++.|+++|.+.
T Consensus        85 ~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         85 GPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            3569999998753211   1222   2234456655555555544321  345677776643

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.27  E-value=0.0051  Score=55.63  Aligned_cols=156  Identities=17%  Similarity=0.200  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~~   88 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++++.++.......+....  .++..+. +-++   .+++       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  899998765322222232221  1222111 1122   2222       245


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      .|++|+.+|......   .+   ....+..|+..    .+.+.+.+.+....+.||+++......            +.+
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~  151 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ------------GGI  151 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC------------CCC
Confidence            799999998643211   12   22334556544    444444554433346677765533211            112


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..-.++.+......+.+.+|..+.  +..|++..+
T Consensus       152 ~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v  184 (251)
T PRK12481        152 RVPSYTASKSAVMGLTRALATELS--QYNINVNAI  184 (251)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            222345544344456666776654  444544444

>PRK06128 oxidoreductase; Provisional

Probab=97.27  E-value=0.0089  Score=55.62  Aligned_cols=115  Identities=22%  Similarity=0.242  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEe-CCCC---HHh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------   84 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+.+.    .......+....  .++..+. .-+|   .++       
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999888  888876643    112222233221  1222111 1122   112       


Q ss_pred             hcCCCcEEEEcCCCCCCC----CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           85 ALTGMDLVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      .+...|++|+++|.....    ..+   ....+..|+.....+++.+.++. +.+.||+++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            234689999999864211    112   23456678777777777776654 3456666654

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.26  E-value=0.016  Score=51.87  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---H-------hhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---E-------NALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~~   87 (332)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++++++.......+....  ..+..+. +-++.   .       +.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999998  899999765322223233221  1222111 11221   1       1234


Q ss_pred             CCcEEEEcCCCCCCCC---C---ChhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~---~r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tN  138 (332)
                      ..|++|.++|......   .   ...+.+..|+.....+.+.+.+    ....+.+|+++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            6899999998643211   1   1223455666555555555433    222456666654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12827 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.011  Score=52.82  Aligned_cols=117  Identities=18%  Similarity=0.270  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHH----HHHHHhcCCCCCeEEEEeC-CCC---HHhhc--
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG----VTADISHMDTGAVVRGFLG-QPQ---LENAL--   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~----~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--   86 (332)
                      +.++|.|+||+|++|+.++..|+..|+  ++++++...  ...    ...++....  ..+..+.. -.|   +++++  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence            357899999999999999999999888  899988643  111    112222211  22222111 122   12222  


Q ss_pred             -----CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHH-h---hCCCcEEEEecCC
Q 020049           87 -----TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA-K---CCPNATVNLISNP  139 (332)
Q Consensus        87 -----~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~-~---~~p~a~viv~tNP  139 (332)
                           ...|.||.++|.....   ..+.   ...+..|......+++.+. .   ......+++++..
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  148 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV  148 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence                 4689999999865321   1121   2335667777777777765 1   1223445555543

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.26  E-value=0.0021  Score=61.04  Aligned_cols=98  Identities=22%  Similarity=0.241  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ...++|.|+||+|++|+.++..|....-..+|+++++++  +.....++.+.    .      -.++++++.++|+||.+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~------i~~l~~~l~~aDiVv~~  222 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----K------ILSLEEALPEADIVVWV  222 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----c------HHhHHHHHccCCEEEEC
Confidence            345689999999999999999997542234899999865  22222222211    1      12567899999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  143 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~  143 (332)
                      ++.+...-.+..++                  .+..+++=.+.|=|+-
T Consensus       223 ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd  252 (340)
T PRK14982        223 ASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLD  252 (340)
T ss_pred             CcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCC
Confidence            88764211111111                  2456666678887775

>PRK06182 short chain dehydrogenase; Validated

Probab=97.25  E-value=0.0028  Score=57.93  Aligned_cols=113  Identities=13%  Similarity=0.125  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcC-------CCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT-------GMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aDi   91 (332)
                      .++|.|+||+|.+|..++..|+..|+  +|++.++++..  ..++..... ..+. ......+++++++       +.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46899999999999999999999888  89999987521  112221111 1111 1111122223333       7899


Q ss_pred             EEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           92 VIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        92 Vi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|+++|.....   ..+   ....+..|...    ++.+.+.+++... +.||+++.
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            99999864321   111   22334455543    5666666665543 45666654

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.24  E-value=0.0046  Score=55.15  Aligned_cols=113  Identities=21%  Similarity=0.332  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~   86 (332)
                      .+++.|+||+|.+|+.++..|++.|.  .|++.+.+.  ......++.     ..+..+. .-++.   .+       .+
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  888888765  222222221     1122111 11221   11       13


Q ss_pred             CCCcEEEEcCCCCCCC---CC---ChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCC
Q 020049           87 TGMDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  139 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~---~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP  139 (332)
                      ...|+||.++|.....   ..   +....+..|+.....+++.+.+.   .+.+.+++++..
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  140 (245)
T PRK12936         79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV  140 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence            4689999999864321   11   12234456666555555544322   234566666654

>PRK08589 short chain dehydrogenase; Validated

Probab=97.23  E-value=0.026  Score=51.63  Aligned_cols=154  Identities=14%  Similarity=0.146  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++ ......++.+..  .++..+. .-++.   .++       +.
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999988  999999874 233334443322  1222111 11221   121       23


Q ss_pred             CCcEEEEcCCCCCCCC----CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..|++|..+|.....+    .+.   ...+..|+..    .+.+.+.+.+.  .+.||+++......            +
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------------~  147 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFSGQA------------A  147 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchhhcC------------C
Confidence            5799999998753211    111   1223345443    34444444432  36677776533221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       148 ~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~v~~v  182 (272)
T PRK08589        148 DLYRSGYNAAKGAVINFTKSIAIEYG--RDGIRANAI  182 (272)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            12112233333333456667777664  445544433

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0072  Score=54.75  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------~   87 (332)
                      ++|.|+||+|.+|+.++..|+..|.  +|+++|++..  +....++....  ..+..+. .-+|.   .+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  8999998762  22233343322  2222211 11232   1222       3


Q ss_pred             CCcEEEEcCCCCCCCC---C-Ch---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~-~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP  139 (332)
                      ..|+||.++|......   . +.   ...+..|+.....+.+.+.++.  ..+.+++++..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~  138 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL  138 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            6899999988643221   1 11   2235566666666666654332  23456665543

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.01  Score=53.62  Aligned_cols=35  Identities=37%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999888  899999875

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.20  E-value=0.0071  Score=54.54  Aligned_cols=115  Identities=20%  Similarity=0.257  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.+..  ..+..+. .-+|.   ++.       +
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999887  999999876  233333444322  1222111 11221   111       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ...|+||.++|.....   ..+   ....+..|+.....+.+.+.++.   +.+.||++|.
T Consensus        85 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  145 (254)
T PRK08085         85 GPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICS  145 (254)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            3579999999864211   111   22344556555445555444332   3355666653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.20  E-value=0.0037  Score=56.36  Aligned_cols=118  Identities=13%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      ..++|.|+||+|.+|+.++..|+..|.  +|+++|+++  ......++....  ..+..+. .-++   +..++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999998888  999999876  233333443322  1122111 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCC
Q 020049           87 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~  140 (332)
                       ...|.+|.++|.....   ..+.   ...+..|+.....+.+.+.++   ...+.+|+++...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeech
Confidence             3458999998864221   1111   223556666555555444332   2345666666543

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.012  Score=52.62  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      +.++|.|+||+|.+|+.++..|++.|+  +|++++.++  ......++....  .++..+. .-+|.   ++.       
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   81 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999888  899998775  222333443321  2222211 11221   112       


Q ss_pred             cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      +...|+||.++|.....   ..+.   ...+..|......+.+.+.++   .+.+.++++|.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            25789999999864321   1122   222445666555555555433   22456666654

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0061  Score=54.95  Aligned_cols=141  Identities=11%  Similarity=0.073  Sum_probs=77.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcC-------C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALT-------G   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------~   88 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++...    ...  .  ..+..+. .-+   +.+++++       .
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~--~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVD--G--RPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhc--C--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999888  89999987522    011  1  1121111 111   2223333       4


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      .|+||.++|......   .+   ....+..|+.....+.+.+.+    ....+.+|++|.-....            +.|
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~  143 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRR------------PSP  143 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCC------------CCC
Confidence            599999998542111   11   223445566655555555443    22335666665432211            122


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhC
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      ..-.++.+......+.+.++..++
T Consensus       144 ~~~~Y~~sK~a~~~l~~~la~e~~  167 (252)
T PRK07856        144 GTAAYGAAKAGLLNLTRSLAVEWA  167 (252)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHhc
Confidence            223344443333456666777665

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.18  E-value=0.00071  Score=54.50  Aligned_cols=72  Identities=21%  Similarity=0.302  Sum_probs=45.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHH-HHhc-CCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISH-MDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-dl~~-~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ||+|+||+|++|..++..|...+...-+.+++.....|... +... ......+...  ..+ .+.+.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--DAD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--ETS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--ecc-hhHhhcCCEEEecC
Confidence            79999999999999999999877665566676654233222 1111 1112233332  124 46689999999984

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN02996 fatty acyl-CoA reductase

Probab=97.17  E-value=0.0063  Score=60.94  Aligned_cols=111  Identities=17%  Similarity=0.106  Sum_probs=69.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC----cH-HHHHHHhcCC------------C----CCeE
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN----TP-GVTADISHMD------------T----GAVV   73 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~----~~-~~~~dl~~~~------------~----~~~v   73 (332)
                      ++.+.+.|.|+||+|++|+.++..|+.. +-..+|+++.+..    .. ....++.+..            .    ..++
T Consensus         7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv   86 (491)
T PLN02996          7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV   86 (491)
T ss_pred             HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence            3456678999999999999999987764 3445777777644    11 1111111110            0    1233


Q ss_pred             EEEeCCC----------C-HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh
Q 020049           74 RGFLGQP----------Q-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC  127 (332)
Q Consensus        74 ~~~~~~~----------d-~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~  127 (332)
                      ..+.+.-          + +++.++++|+||++|+... ......+....|+....++.+.+.+.
T Consensus        87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            3322211          1 3456789999999987543 22344556788999999999988764

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.17  E-value=0.0041  Score=55.64  Aligned_cols=115  Identities=18%  Similarity=0.267  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|+  +|++++++.  ......++....  ..+..+.. -.|   +.+.+      
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED   80 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999888  899999875  222233343221  22332211 112   22222      


Q ss_pred             -CCCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN  138 (332)
                       ...|+||+++|.... +  ..+.   ...+..|+.....+.+.+    .+.. ...+|++|.
T Consensus        81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~ss  142 (251)
T PRK12826         81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG-GGRIVLTSS  142 (251)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence             368999999876432 1  1222   223455666555555544    3333 345555543

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.17  E-value=0.0034  Score=58.13  Aligned_cols=65  Identities=18%  Similarity=0.249  Sum_probs=48.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||++||- |.||+..|..|+..|+  +++.+|++..+. +..+.....    ..   ..+..++.++||+||.+.
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEec
Confidence            58999999 9999999999999999  999999986432 232333221    11   123478999999999984

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.0051  Score=55.39  Aligned_cols=114  Identities=19%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      +.++|.|+||+|.+|+.++..|++.|.  +|++++++.. .....++..    ..+..+. ..++   +.+.       +
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   87 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF   87 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            346899999999999999999999887  8999998752 222222221    1111111 1122   1122       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ...|+||.++|......   .+.   ...+..|+.....+.+.+.++.   ..+.++++|.
T Consensus        88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  148 (255)
T PRK06841         88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS  148 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence            36799999998643211   111   2234566666656665554432   2455666654

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.011  Score=53.84  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=62.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcC-------CCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT-------GMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aDiV   92 (332)
                      ++|.|+||+|.+|+.++..|+..|.  +|++.+++......  ..+.   ..+. ......+++++++       ..|++
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~---~~~~~D~~d~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGV---ELLELDVTDDASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCC---eeEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4799999999999999999999887  89999987521110  0000   1111 1111122333343       46999


Q ss_pred             EEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           93 IIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        93 i~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                      |.++|......   .+   ....+..|......+.+.    +.+.. .+.||++|.
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS  132 (270)
T PRK06179         78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISS  132 (270)
T ss_pred             EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence            99998753221   11   123344555444444444    44433 345666654

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.013  Score=52.99  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.+....... ..+.. ...+. ......+..+.+...|++|+++|..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~-~~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSES-NDESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhh-hccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            4899999999999999999999988  899999875211111 11111 11111 1111123345677899999999864


Q ss_pred             CCCCCCh---hhhHhhhHHHHHHHHHHH
Q 020049          100 RKPGMTR---DDLFNINAGIVRTLCEGI  124 (332)
Q Consensus       100 ~~~g~~r---~~~~~~n~~~~~~i~~~i  124 (332)
                      .....+.   .+.+..|+.....+++.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~  118 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELF  118 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            3222222   334556665555555443

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.15  E-value=0.003  Score=62.72  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=62.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcC---CCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~---~aDiVi~~   95 (332)
                      .+|+|||. |.+|+++|..|+..|+  +|.++|+++..  +.++.....  ...+..   ..+++++++   ++|+|++.
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~   73 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL   73 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence            48999999 9999999999999998  99999987622  222221100  112222   345666665   58988887


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                      ..               +-+.++++.+.+..+. |+.+||..+|-..
T Consensus        74 v~---------------~~~~v~~vi~~l~~~L~~g~iIID~gn~~~  105 (470)
T PTZ00142         74 IK---------------AGEAVDETIDNLLPLLEKGDIIIDGGNEWY  105 (470)
T ss_pred             eC---------------ChHHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            31               1234444445555443 6777888776443

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.011  Score=53.20  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHh-------h
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------A   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a   85 (332)
                      ..++|.|+||+|.+|++++..|+..|.  +|+++|+++  ......++....  .++..+. +-+|   ++.       .
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALER   79 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999876  222233333211  1122111 1122   111       2


Q ss_pred             cCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN  138 (332)
                      +...|+||+++|....  +  ..+.   ...+..|+.....+.+.+.++.  ....||++|.
T Consensus        80 ~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         80 FGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             cCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            2468999999986422  1  1222   2334566665666666655432  1245666654

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.02  Score=51.50  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  ++++.+ ++.  ......++....  ..+..+. +-+|.   .+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999887  776654 433  122222332211  1122111 11232   2222      


Q ss_pred             -------CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           87 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        87 -------~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                             .+.|+||+++|......   .+.   ...+..|+.....+.+.+.++. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   26899999998653211   111   2334567777766777666553 2345555543

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.14  E-value=0.0037  Score=57.68  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||. |.+|..++..|...|+..+|+.+|+++..  ...+.....   ...   ..++.++ .+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~~-~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEEL-KKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHHH-hcCCEEEEeC
Confidence            58999999 99999999999988865589999987521  111222211   111   1244454 4699999995

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.14  E-value=0.0025  Score=59.51  Aligned_cols=64  Identities=20%  Similarity=0.313  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||. |.+|..++..|+..|+  +|+++|+++..  +.++....    ...   ..+..+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            48999999 9999999999999888  89999987622  22232221    111   235578899999999984

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.14  E-value=0.00077  Score=59.58  Aligned_cols=106  Identities=18%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC------cHHH---HHHHhcCC-CCCe------EEEEeCCCCHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGV---TADISHMD-TGAV------VRGFLGQPQLEN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~------~~~~---~~dl~~~~-~~~~------v~~~~~~~d~~~   84 (332)
                      .||+|+|. |.+|+..|..++..|+  +|.|||+.+      ++..   ..+|+... ...+      +.-+++++++.|
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            48999998 9999999999999999  999999987      1121   22333221 1111      112445788999


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                      ..++|=.|-.++              .+.+...+++.+++++..-+. .|+.|.....+.
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~-tIlaSSTSt~mp  125 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPT-TILASSTSTFMP  125 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCc-eEEeccccccCh
Confidence            999986655553              556788899999999887322 355666555553

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.13  E-value=0.0059  Score=56.50  Aligned_cols=99  Identities=17%  Similarity=0.130  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +||+|||+ |.+|+.++..|...+.  ..+|+++|.+... ....+....  ..+..   +.+..++++++|+||++.. 
T Consensus         2 ~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~---~~~~~e~~~~aDvVilavp-   73 (277)
T PRK06928          2 EKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVEL---ADNEAEIFTKCDHSFICVP-   73 (277)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEE---eCCHHHHHhhCCEEEEecC-
Confidence            58999999 9999999999988762  2489999986521 122222211  12222   2355677899999999852 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                                     ...+.++++.+..+. ++..||.+.+-+..
T Consensus        74 ---------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 ---------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence                           223445666665544 45566666665544

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.13  E-value=0.0024  Score=58.92  Aligned_cols=68  Identities=13%  Similarity=0.173  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||+|||+ |.||++++..|++.++  ..+|+.+|+++.  ....+.+.. .  +...   ++..+.+++||+||++.
T Consensus         2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITIT---TNNNEVANSADILILSI   71 (272)
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence            468999999 9999999999988774  357999998652  222232211 1  2221   24457789999999985

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.13  E-value=0.0019  Score=53.12  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=52.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+..++.|+|| |.+|..++..|...|. .+|.+++++..  +..+..+    ....+.... ..++.+.+.++|+||.+
T Consensus        10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~a   82 (135)
T PF01488_consen   10 LKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVINA   82 (135)
T ss_dssp             GTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE-
T ss_pred             cCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEEe
Confidence            34579999999 9999999999998876 37999998752  2333333    123344332 34667788999999998


Q ss_pred             CCCC
Q 020049           96 AGVP   99 (332)
Q Consensus        96 ~g~~   99 (332)
                      .+.+
T Consensus        83 T~~~   86 (135)
T PF01488_consen   83 TPSG   86 (135)
T ss_dssp             SSTT
T ss_pred             cCCC
Confidence            6544

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.13  E-value=0.0025  Score=60.51  Aligned_cols=62  Identities=21%  Similarity=0.343  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|+.+|..|...|.  +|+.+|++....  .+.        +..   ..++++++++||+|++..
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~~---~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LTY---KDSVKEAIKDADIISLHV  206 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hhc---cCCHHHHHhcCCEEEEeC
Confidence            3468999999 9999999999987777  999999875210  000        111   236789999999999985

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=97.13  E-value=0.0077  Score=53.40  Aligned_cols=113  Identities=17%  Similarity=0.262  Sum_probs=66.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG   88 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~   88 (332)
                      |.|+|++|.+|+.++..|++.|+  +|++++.+.   ......++.+..  ..+.... +-+|   +.+++       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            47999999999999999999988  899998764   222333443322  1122111 1122   22333       34


Q ss_pred             CcEEEEcCCCCCCC---CC---ChhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 020049           89 MDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  139 (332)
Q Consensus        89 aDiVi~~~g~~~~~---g~---~r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP  139 (332)
                      .|+||+.+|.....   +.   .....+..|......+.+.+.++.   ..+.++++|..
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~  136 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV  136 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence            69999998864211   11   123445677777777777666542   23456666554

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=97.12  E-value=0.017  Score=51.63  Aligned_cols=115  Identities=13%  Similarity=0.206  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (332)
                      .+++.|+||+|.+|+.++..|+..|.  ++++.+...   .+....++.+..  .++..+.. -+|   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999998887  777665432   222333443321  22322211 122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCC------CChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g------~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                       ...|+||+++|......      ....+.+..|+.....+.+.+..+   ...+.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             34799999998643221      112334566766666666665543   23445666654

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.11  E-value=0.019  Score=51.71  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.++++  ......++.+..  .++..+. .-++.   +++       +
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF   81 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999988  899999876  233334444322  1222211 11221   122       2


Q ss_pred             CCCcEEEEcCCCCC--CC--CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|..+|...  .+  ..+.   ...+..|+.    ..+.+.+.+.+. ..+.||+++......           .
T Consensus        82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~-~~~~iv~~sS~~~~~-----------~  149 (254)
T PRK07478         82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLAR-GGGSLIFTSTFVGHT-----------A  149 (254)
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEechHhhc-----------c
Confidence            36899999998632  12  1222   233455654    444445555443 344566655422110           1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+...+++.++  +..|++..+
T Consensus       150 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (254)
T PRK07478        150 GFPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL  185 (254)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            233333455544444456667777664  344544433

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.11  E-value=0.0048  Score=56.01  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|+++
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999998  899999875

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0098  Score=53.20  Aligned_cols=111  Identities=20%  Similarity=0.179  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE----------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++.  .....++   .  ..+..+. ..+|.+          +.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAEL---G--ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999988  8999998752  1111112   1  1222111 112221          223


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                      ...|+||..+|......   .+.   ...+..|+.....+.+.+.++- ..+.+++.+
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~  136 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG  136 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            46899999988643211   112   2345677777777777776542 223444443

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.10  E-value=0.01  Score=56.06  Aligned_cols=115  Identities=15%  Similarity=0.180  Sum_probs=65.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE--eCCCCH-------HhhcC--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQPQL-------ENALT--   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~--~~~~d~-------~~a~~--   87 (332)
                      ..+.|+||+|.+|..+|..|+..|.  +|+++++++  .+....++........+..+  .-+.+.       .+.+.  
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            5799999999999999999999988  899999987  33344445432111122211  111121       22333  


Q ss_pred             CCcEEEEcCCCCCCC-----CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKP-----GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~-----g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                      +.|++|+.+|.....     ..+.   ...+..|+.....+.+.    +.+. ..+.||++|.
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS  193 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKR-KKGAIINIGS  193 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence            455999999864211     1222   22345565554444444    4433 3455666654

>PRK07985 oxidoreductase; Provisional

Probab=97.09  E-value=0.03  Score=52.02  Aligned_cols=157  Identities=16%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc----HHHHHHHhcCCCCCeEEEEe-CCCCHH----------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFL-GQPQLE----------   83 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~~----------   83 (332)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.+.+..    +.....+....  ..+..+. .-+|.+          
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~  123 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAH  123 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence            336899999999999999999999988  8888876531    11111122211  1222111 112311          


Q ss_pred             hhcCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           84 NALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      +.+...|++|+.+|....  +  ..+.   ...+..|+.....+.+.+.++. .++.||++|.....            .
T Consensus       124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~------------~  191 (294)
T PRK07985        124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAY------------Q  191 (294)
T ss_pred             HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhc------------c
Confidence            223567999999886321  1  1222   2335567766666666655442 34667776653211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++.++
T Consensus       192 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~i  227 (294)
T PRK07985        192 PSPHLLDYAATKAAILNYSRGLAKQVA--EKGIRVNIV  227 (294)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHh--HhCcEEEEE
Confidence            122222344443333445566666653  344544433

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.09  E-value=0.0037  Score=55.54  Aligned_cols=114  Identities=18%  Similarity=0.312  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|++.|+  +|.++++++.  .....++....  ..+..+. .-.|   +.+++       
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAF   80 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            36899999999999999999999888  7999998762  22223333221  1122111 1112   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEec
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS  137 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~t  137 (332)
                      ...|.||.++|.....   ..+.   ...+..|+.....+.+.+.++   .....+|++|
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~s  140 (246)
T PRK05653         81 GALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNIS  140 (246)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence            3469999998753221   1121   223455666655555555432   2224555555

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.09  E-value=0.0078  Score=58.74  Aligned_cols=103  Identities=21%  Similarity=0.233  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCe-EEE-EeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VRG-FLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~-v~~-~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.++|.|+||+|.+|..++..|++.|.  +|+++|.++.+ ....+........ +.. .....+..+.+.+.|++|+.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            456899999999999999999999888  89999986521 1111211111111 111 111122345578999999998


Q ss_pred             CCCCCCCCCh---hhhHhhhHHHHHHHHHHH
Q 020049           97 GVPRKPGMTR---DDLFNINAGIVRTLCEGI  124 (332)
Q Consensus        97 g~~~~~g~~r---~~~~~~n~~~~~~i~~~i  124 (332)
                      |.......+.   ...+..|......+.+.+
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~  284 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMELF  284 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8653333332   233455655444444443

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.008  Score=53.85  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=67.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE-eCCCCHH---h-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE---N-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~---~-------a~   86 (332)
                      .+++.|+||+|++|.+++..|+..|.  +|+++|+++  ......++.+..  ..+..+ ..-+|.+   +       .+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  899999875  222223333221  111111 1122321   1       12


Q ss_pred             CCCcEEEEcCCCCCC----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRK----P--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ...|+||+++|....    +  ..+.   ...+..|+.....+.+.+.++.   +.+.++++|.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (250)
T PRK07774         82 GGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSS  145 (250)
T ss_pred             CCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEec
Confidence            468999999986421    1  1121   2334567666666666655442   2345666553

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.015  Score=53.98  Aligned_cols=115  Identities=13%  Similarity=0.131  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|++++.++.   ......+....  .++..+. +-++   +.+.+      
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999888  8999998752   22222232211  2222211 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCC--C--CCC---hhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRK--P--GMT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~--~--g~~---r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tN  138 (332)
                       ...|+||.++|....  +  ..+   ....+..|+.....+.+.+.++ .+.+.+|++|.
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS  182 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS  182 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence             357999999886321  1  111   1334567777777777777654 24556666654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.08  E-value=0.0031  Score=58.96  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=44.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC---CcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVi~~~   96 (332)
                      |||+|||. |.+|+.++..|...++  +|+.+|+++.+  +..+.+..    ...   ..+.++.+++   +|+|+++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            58999999 9999999999998887  89999987522  22232221    121   2345566555   68999884

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.017  Score=51.69  Aligned_cols=75  Identities=23%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|+.++..|++.|.  +|++++.+..  .....++. .  ...+..+. +-+|   ..+++       
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~   79 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARW   79 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999887  8999998762  22222232 1  12222211 1123   22222       


Q ss_pred             CCCcEEEEcCCCC
Q 020049           87 TGMDLVIIPAGVP   99 (332)
Q Consensus        87 ~~aDiVi~~~g~~   99 (332)
                      ...|+||+++|..
T Consensus        80 ~~id~vi~~ag~~   92 (252)
T PRK06138         80 GRLDVLVNNAGFG   92 (252)
T ss_pred             CCCCEEEECCCCC
Confidence            3789999999864

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=97.07  E-value=0.013  Score=61.04  Aligned_cols=150  Identities=17%  Similarity=0.170  Sum_probs=79.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      ..++|.|+||+|.+|+.++..|++.|.  +|+++|++.  ......++........+..+. .-+|   ..++++     
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999888  999999876  222223333211111111111 1122   223333     


Q ss_pred             --CCcEEEEcCCCCCCCC---CChhh---hHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           88 --GMDLVIIPAGVPRKPG---MTRDD---LFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~g---~~r~~---~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                        +.|+||.++|......   .+..+   .+..|+.    ..+...+.+.+....+.|+++|......            
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~------------  558 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVY------------  558 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcC------------
Confidence              6899999998643211   11111   1223332    3445556665544445555554321111            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      +.+..-.++.+......+.+.++..++
T Consensus       559 ~~~~~~aY~aSKaA~~~l~r~lA~el~  585 (676)
T TIGR02632       559 AGKNASAYSAAKAAEAHLARCLAAEGG  585 (676)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            112222344444444556666777665

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.014  Score=54.15  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++.  .+....++....  ..+..+. .-+|   ..++       +.
T Consensus        41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  116 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIG  116 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999888  999999876  222333332211  1122111 1122   2222       33


Q ss_pred             CCcEEEEcCCCC
Q 020049           88 GMDLVIIPAGVP   99 (332)
Q Consensus        88 ~aDiVi~~~g~~   99 (332)
                      ..|++|.++|..
T Consensus       117 ~id~li~~AG~~  128 (293)
T PRK05866        117 GVDILINNAGRS  128 (293)
T ss_pred             CCCEEEECCCCC
Confidence            789999999864

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.05  E-value=0.011  Score=55.53  Aligned_cols=171  Identities=16%  Similarity=0.057  Sum_probs=86.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH----------hh
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE----------NA   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a   85 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.++++.  .....++........+..+. .-.|++          +.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999887  8999998762  22233343221112222211 112321          12


Q ss_pred             cCCCcEEEEcCCCCCCCC--CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           86 LTGMDLVIIPAGVPRKPG--MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g--~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ....|++|..||....+.  .+   ....+..|...    .+.+.+.+.+.  .+.||+++.-......+-..-+.....
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~  168 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERS  168 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccccc
Confidence            245899999998643221  11   12234445443    44555555432  345555543221110000000000011


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ++....++.+.+....+...+++.+......|.+..+
T Consensus       169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v  205 (313)
T PRK05854        169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA  205 (313)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            2333445555555555666777665444445554444

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0077  Score=54.17  Aligned_cols=115  Identities=12%  Similarity=0.114  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  .|+++|++.  ......++.+..  .....+. .-++.   +++       +
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH   83 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999887  899999875  233333443322  1122111 11221   122       2


Q ss_pred             CCCcEEEEcCCCCC--CC--CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ...|++|..+|...  .+  ..+.   ...+..|+.....+.+.+.++.   ..+.+++++.
T Consensus        84 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  145 (252)
T PRK07035         84 GRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVAS  145 (252)
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECc
Confidence            35799999987421  11  1222   2234555555444444443332   2356666654

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.029  Score=50.23  Aligned_cols=78  Identities=24%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~~   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.+++.  ......++........+..+. +-++.+          +.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999887  899999876  222333333221112233221 122321          2245


Q ss_pred             CCcEEEEcCCCCC
Q 020049           88 GMDLVIIPAGVPR  100 (332)
Q Consensus        88 ~aDiVi~~~g~~~  100 (332)
                      ..|+||+++|...
T Consensus        81 ~id~vi~~ag~~~   93 (248)
T PRK08251         81 GLDRVIVNAGIGK   93 (248)
T ss_pred             CCCEEEECCCcCC
Confidence            7899999998653

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0048  Score=56.68  Aligned_cols=110  Identities=12%  Similarity=0.080  Sum_probs=64.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc--------CCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL--------TGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~--------~~a   89 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.++++..  ..++..... ..+. . .-+|   .+.++        ...
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~--~~~l~~~~~-~~~~-~-Dl~d~~~~~~~~~~~~~~~~g~i   77 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEED--VAALEAEGL-EAFQ-L-DYAEPESIAALVAQVLELSGGRL   77 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHCCc-eEEE-c-cCCCHHHHHHHHHHHHHHcCCCc
Confidence            4799999999999999999999888  89999987521  112222111 1111 1 1122   11222        246


Q ss_pred             cEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      |++|.++|......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            99999988643211   11   12344566555    566666666543 345666654

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.013  Score=52.42  Aligned_cols=145  Identities=19%  Similarity=0.153  Sum_probs=78.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCe-EE-EEeCCCCHHhhcCC----CcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VR-GFLGQPQLENALTG----MDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~----aDiVi~   94 (332)
                      .++.|+||+|.+|..++..|+..|.  +|+++|+++...  .++.+...... +. ..+...+.+++++.    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999999888  899999875211  11211110111 11 11111223333333    477888


Q ss_pred             cCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeeh
Q 020049           95 PAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (332)
Q Consensus        95 ~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~  167 (332)
                      .+|......   .+.   ...+.-|+.....+.+.+..+- +...+++++.....            .+.|..-.++.+.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y~asK  145 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASE------------LALPRAEAYGASK  145 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhc------------cCCCCCchhhHHH
Confidence            876432111   122   2345677777777777766543 34456655442211            1233333455554


Q ss_pred             hhHHHHHHHHHHHh
Q 020049          168 LDVVRANTFVAEVL  181 (332)
Q Consensus       168 ld~~r~~~~la~~l  181 (332)
                      .....+.+.++..+
T Consensus       146 ~a~~~~~~~l~~e~  159 (240)
T PRK06101        146 AAVAYFARTLQLDL  159 (240)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44445666666544

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.03  E-value=0.01  Score=51.01  Aligned_cols=33  Identities=39%  Similarity=0.550  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ||+|+|+ |.+|+.++..|+..|.. +++|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg-~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVG-NLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence            6899999 99999999999998874 899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.03  E-value=0.0083  Score=56.63  Aligned_cols=109  Identities=12%  Similarity=0.038  Sum_probs=68.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHH-----HHHhcCC-----CC-CeEEEEeCC----------C
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHMD-----TG-AVVRGFLGQ----------P   80 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-----~dl~~~~-----~~-~~v~~~~~~----------~   80 (332)
                      +|.|+||+|++|++++..|+..+...+|+++.+.......     ..+....     .. .++..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            5899999999999999999988753478888876521111     1111100     00 234332211          1


Q ss_pred             CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCc
Q 020049           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA  131 (332)
Q Consensus        81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a  131 (332)
                      ++.+..+++|+||++++... ......++...|+.....+.+...+.....
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~  130 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP  130 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence            23455688999999987542 122334555688888888888887765444

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.02  E-value=0.011  Score=53.38  Aligned_cols=155  Identities=17%  Similarity=0.127  Sum_probs=82.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      .+.+++.|+||+|.+|++++..|+..|.  +|+++|+++ ......++....  ..+..+. .-+|.   .++       
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEA   81 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999999988  899999875 222223333221  1222111 11221   222       


Q ss_pred             cCCCcEEEEcCCCCC--CC--CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           86 LTGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      +...|++|.++|...  .+  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.||++|.....            
T Consensus        82 ~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~------------  148 (260)
T PRK12823         82 FGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG-GGAIVNVSSIATR------------  148 (260)
T ss_pred             cCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEEcCcccc------------
Confidence            246899999987532  11  1122   122334443    4445556555433 3456666542210            


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       + +..-.++.+......+.+.++..+.  +..+++..+
T Consensus       149 -~-~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  183 (260)
T PRK12823        149 -G-INRVPYSAAKGGVNALTASLAFEYA--EHGIRVNAV  183 (260)
T ss_pred             -C-CCCCccHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence             0 1112355554444456667776663  344544443

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.052  Score=49.42  Aligned_cols=115  Identities=13%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------CC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------TG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------~~   88 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|+++|++.  +.....++.... ..++..+. +-+|   .++.+      ..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            4689999999999999999999998  899999876  223333343221 12222111 1122   22222      35


Q ss_pred             CcEEEEcCCCCCCC---CCChh---hhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           89 MDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        89 aDiVi~~~g~~~~~---g~~r~---~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      .|++|.++|.+...   ..+..   ..+..|    ....+.+.+.+++.. .+.||++|..
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~  145 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV  145 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence            79999999865321   12222   223334    445666677765443 4566666553

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.01  E-value=0.0034  Score=56.29  Aligned_cols=69  Identities=22%  Similarity=0.260  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH-HhcCCCCCeEEEEeCCCC---HHhh-cCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d-l~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVi~~   95 (332)
                      |+|+|+|+ |.+|+++|..|...|+  +++++|.++..  +.. +.+.. ...+... ..+|   +++| +.+||.+|.+
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~-~~~~v~g-d~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADEL-DTHVVIG-DATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhc-ceEEEEe-cCCCHHHHHhcCCCcCCEEEEe
Confidence            68999999 9999999999999999  99999998721  111 11111 1121111 1223   3343 6888999998


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      -
T Consensus        74 t   74 (225)
T COG0569          74 T   74 (225)
T ss_pred             e
Confidence            4

>PRK08226 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.015  Score=52.68  Aligned_cols=115  Identities=21%  Similarity=0.261  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~   87 (332)
                      .+++.|+||+|.+|+.++..|+..|.  +|+++++++ ......++....  .++..+. .-++   .++.       +.
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPEIEKLADELCGRG--HRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999888  899999876 222223332211  1222211 1122   2222       23


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ..|+||.++|.....   ..+   ....+..|+.....+.+.+.++.   ..+.+++++.
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS  141 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSS  141 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            569999999863211   111   22235566665555555544332   2345555543

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.01  E-value=0.0068  Score=53.88  Aligned_cols=102  Identities=18%  Similarity=0.272  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeC-CCC---HHhh------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENA------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a------   85 (332)
                      ++++|.|+||+|.+|+.++..|++.|+  ++++......   .....++....  ..+..+.. -.|   +.++      
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~   80 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSDEEAAEELVEAVEALG--RRAQAVQADVTDKAALEAAVAAAVE   80 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCcCCHHHHHHHHHHHHH
Confidence            446899999999999999999999988  7666554431   11222222211  22222111 112   1222      


Q ss_pred             -cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHH
Q 020049           86 -LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI  124 (332)
Q Consensus        86 -~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i  124 (332)
                       +.+.|.||+++|......   .+.   .+.+..|+.....+.+.+
T Consensus        81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~  126 (249)
T PRK12825         81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAV  126 (249)
T ss_pred             HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHH
Confidence             246799999998543211   122   233455666665555555

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.01  E-value=0.009  Score=52.63  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=49.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----c--------------H--HHHHHHhcCCCCCeEEEEeC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----T--------------P--GVTADISHMDTGAVVRGFLG   78 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~--------------~--~~~~dl~~~~~~~~v~~~~~   78 (332)
                      ..||+|+|+ |.+|+.++..|+..|. .+|.++|.+.     +              +  ..+..+.......++..+..
T Consensus        21 ~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        21 NSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            358999999 9999999999999886 4899999874     0              1  11123333322334433221


Q ss_pred             C---CCHHhhcCCCcEEEEcC
Q 020049           79 Q---PQLENALTGMDLVIIPA   96 (332)
Q Consensus        79 ~---~d~~~a~~~aDiVi~~~   96 (332)
                      .   .+..+.++++|+||.+.
T Consensus        99 ~i~~~~~~~~~~~~D~Vi~~~  119 (202)
T TIGR02356        99 RVTAENLELLINNVDLVLDCT  119 (202)
T ss_pred             cCCHHHHHHHHhCCCEEEECC
Confidence            1   23445689999999884

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.01  E-value=0.004  Score=51.75  Aligned_cols=118  Identities=20%  Similarity=0.223  Sum_probs=70.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH-----HhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-----ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d-----l~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |+|+|+ |.+|..+|..|.+.+.  +|.+++..+ ......     +........+.......+..+..+.+|+||++.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789999 9999999999999888  999999765 212111     1111101112211111221246799999999952


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE-eeh
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTM  167 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG-~~~  167 (332)
                      ..                -..+..+.++.+. |+..|+.+-|=++..-     .+.+.  +|+.++++ ++.
T Consensus        77 a~----------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~-----~l~~~--~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 AY----------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEE-----VLAEY--FPRPRVLGGVTT  125 (151)
T ss_dssp             GG----------------GHHHHHHHHCTGEETTEEEEEESSSSSHHH-----HHHCH--STGSGEEEEEEE
T ss_pred             cc----------------chHHHHHHHhhccCCCcEEEEEeCCCCcHH-----HHHHH--cCCCcEEEEEEe
Confidence            11                1234556677666 6678888889877663     23333  46667765 454

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0096  Score=53.63  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=32.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+.++|.|+||+|.+|+.++..|+..|.  +|+++++++
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3457899999999999999999999887  899999876

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.071  Score=48.22  Aligned_cols=79  Identities=20%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhh------
Q 020049           19 AGFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G-~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a------   85 (332)
                      +.+++.|+||+| .+|..++..|+..|.  +|++.|.+.  ......++.......++..+.. -++   .+++      
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            346899999977 599999999999988  799999876  2222333432111122322211 122   1122      


Q ss_pred             -cCCCcEEEEcCCCC
Q 020049           86 -LTGMDLVIIPAGVP   99 (332)
Q Consensus        86 -~~~aDiVi~~~g~~   99 (332)
                       +...|++|.++|..
T Consensus        94 ~~g~id~li~~ag~~  108 (262)
T PRK07831         94 RLGRLDVLVNNAGLG  108 (262)
T ss_pred             HcCCCCEEEECCCCC
Confidence             24679999999864

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.99  E-value=0.026  Score=50.10  Aligned_cols=115  Identities=21%  Similarity=0.290  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   85 (332)
                      .++|.|+||+|++|+.++..|++.|+  +|++...+..   .....++....  ..+..+. .-.+   +.++       
T Consensus         5 ~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   80 (248)
T PRK05557          5 GKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKAE   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999888  7767665542   22222332221  1222111 1112   1122       


Q ss_pred             cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      +.+.|.||+++|......   .+.   ...+..|+.....+.+.+.++.   +.+.++++|.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         81 FGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            246899999988643211   111   1234456666666666666543   2345666554

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.021  Score=52.05  Aligned_cols=112  Identities=19%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCH----------HhhcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL----------ENALT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~~   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  .|++.++++.  .....++..    ...... .-+|.          .+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~-D~~~~~~~~~~~~~~~~~~~   77 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGL----VVGGPL-DVTDPASFAAFLDAVEADLG   77 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcc----ceEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999888  8999998752  222222221    111110 11121          12235


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      +.|++|.++|......   .+   ....+..|+..    .+.+.+.+.+. +.+.|+++|..
T Consensus        78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  138 (273)
T PRK07825         78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVASL  138 (273)
T ss_pred             CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcCc
Confidence            7899999998643211   11   12234455543    34444444433 34566666543

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.004  Score=57.02  Aligned_cols=111  Identities=15%  Similarity=0.032  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------cCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~~a   89 (332)
                      ++|.|+||+|.+|++++..|+..|.  +|++.+.+...  ..++.+.. ...+..+. .-+|   +.+.       +...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTAT--LADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999887  89999987521  11121111 01111111 1122   1111       2467


Q ss_pred             cEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEec
Q 020049           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~t  137 (332)
                      |.||+++|......   .+   ....+..|+...    +.+.+.+++...+ .+|++|
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            99999998753211   11   223345566554    4444445544333 455554

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.014  Score=54.41  Aligned_cols=171  Identities=20%  Similarity=0.146  Sum_probs=87.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      +.++|.|+||+|.+|+.++..|+..|.  +|++++++..  .....++........+..+. .-.|.   +++       
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            346899999999999999999999887  8999988752  22223333211112232221 11222   111       


Q ss_pred             cCCCcEEEEcCCCCCCCC-CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCch-HHHHHHHHHHhCC
Q 020049           86 LTGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNST-VPIAAEVFKKAGT  156 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g-~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~-t~~~~~~~~~~~~  156 (332)
                      +...|++|++||....+. .+   ....+..|...    .+.+.+.+++. +.+.||++|...... ...-..-......
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS~~~~~~~~~~~~~~~~~~~  171 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPV-PGSRVVTVSSGGHRIRAAIHFDDLQWERR  171 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhC-CCCEEEEECCHHHhccCCCCccccCcccC
Confidence            235899999998642221 11   12234555554    56666666544 345666665422110 0000000000001


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      +++...++.+.+....+.+.+++.+.  +..++..++.
T Consensus       172 ~~~~~~Y~~SK~a~~~~~~~la~~l~--~~~i~v~~v~  207 (306)
T PRK06197        172 YNRVAAYGQSKLANLLFTYELQRRLA--AAGATTIAVA  207 (306)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhh--cCCCCeEEEE
Confidence            22233455555555566777777764  3334444443

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.98  E-value=0.015  Score=52.79  Aligned_cols=155  Identities=14%  Similarity=0.181  Sum_probs=82.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  ++++.|.+.  ......++....  .++..+. +-+|.   ++       .+
T Consensus        10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   85 (265)
T PRK07097         10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999887  899998775  222333343221  1222211 11222   11       22


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|.++|.... +  ..+.   ...+..|.....    .+.+.+.+ ...+.|++++......            +
T Consensus        86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~~------------~  152 (265)
T PRK07097         86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMSEL------------G  152 (265)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccccC------------C
Confidence            457999999986421 1  1111   222344544333    34444433 2356677766543221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+....++.+...-..+.+.+++.++  +..|++..+
T Consensus       153 ~~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v  187 (265)
T PRK07097        153 RETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI  187 (265)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence            22233455543333456666776664  344544433

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.011  Score=54.02  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      ++|.|+||+|.+|+.++..|+..|.  +|++.|++.  .+....++....  .++..+. .-+|.   .+.       +.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999888  899999876  222333343322  1222111 11222   222       23


Q ss_pred             CCcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ..|++|.++|.....   ..+.   ...+..|+.    ..+.+.+.+++.. .+.|+++|.
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS  136 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS  136 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            689999998864321   1111   123445543    4444555555443 345666554

>PRK12742 oxidoreductase; Provisional

Probab=96.98  E-value=0.012  Score=52.35  Aligned_cols=156  Identities=17%  Similarity=0.222  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHH---hh---cCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLE---NA---LTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~---~a---~~~aDiVi   93 (332)
                      .++|.|+||+|.+|+.++..|+..|.  ++++.+..... ...++.... ....... ..+|.+   +.   +...|++|
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQT-DSADRDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEec-CCCCHHHHHHHHHHhCCCcEEE
Confidence            45899999999999999999999888  88887654311 111121110 1111111 112221   22   34589999


Q ss_pred             EcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee
Q 020049           94 IPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus        94 ~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      .++|......   .+.   ...+..|+.....+...+.++. +.+.+|+++.-....           ...+....++.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------~~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR-----------MPVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----------CCCCCCcchHHh
Confidence            9998653211   111   2334456555544444443332 345566654422111           012333456665


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ......+...+++.++  +..+++..+
T Consensus       150 Kaa~~~~~~~la~~~~--~~gi~v~~v  174 (237)
T PRK12742        150 KSALQGMARGLARDFG--PRGITINVV  174 (237)
T ss_pred             HHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            4444556667777764  334544333

>PLN02256 arogenate dehydrogenase

Probab=96.97  E-value=0.0076  Score=56.57  Aligned_cols=65  Identities=18%  Similarity=0.237  Sum_probs=45.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-CCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVi~~~   96 (332)
                      +.+||+|||+ |.+|..++..|...|.  +|+.+|.+.....+.++   .  .  ..+   ++.++.+ .++|+||++.
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g--v--~~~---~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G--V--SFF---RDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C--C--eee---CCHHHHhhCCCCEEEEec
Confidence            4579999998 9999999999988776  89999987522222211   1  1  111   3455655 4799999985

>PRK12743 oxidoreductase; Provisional

Probab=96.97  E-value=0.051  Score=49.03  Aligned_cols=114  Identities=14%  Similarity=0.149  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------c
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~   86 (332)
                      .+|.|+||+|.+|+.++..|+..|.  +|++++...   ......++....  ..+..+. +-++.+   .+       +
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999988  888875433   222223333222  1222211 112211   11       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tN  138 (332)
                      ...|++|+++|......   .+   ....+..|+.....+.+.+.+    ....+.||++|.
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS  140 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS  140 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence            35799999988643211   11   123344555555555544433    333456666655

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.97  E-value=0.024  Score=51.79  Aligned_cols=75  Identities=23%  Similarity=0.237  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      .+++.|+||+|.+|+.++..|+..|.  +|+++|++.  .+....++.+..  .++..+. .-.|   ..++       +
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDF   85 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999988  899999875  233333343221  1222211 1122   1111       2


Q ss_pred             CCCcEEEEcCCC
Q 020049           87 TGMDLVIIPAGV   98 (332)
Q Consensus        87 ~~aDiVi~~~g~   98 (332)
                      ...|++|.++|.
T Consensus        86 g~id~li~~ag~   97 (278)
T PRK08277         86 GPCDILINGAGG   97 (278)
T ss_pred             CCCCEEEECCCC
Confidence            478999999885

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.96  E-value=0.0046  Score=57.89  Aligned_cols=64  Identities=16%  Similarity=0.232  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC---CcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVi~~~   96 (332)
                      |||+|||. |.+|+.++..|+..++  +|.++|+++..  +.++.+..    ...   ..+..+.++.   +|+|+++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999999 9999999999999887  89999987522  22233221    121   1234455554   69999874

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.96  E-value=0.01  Score=52.73  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. ++.++|.+.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gvg-~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGVG-NLKLVDFDV   62 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence            358999999 99999999999998874 899999883

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.96  E-value=0.0023  Score=58.18  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEccCC--cH------HHHHHHhcCCCCCeEEEEeCCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TP------GVTADISHMDTGAVVRGFLGQPQ   81 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~----~~~-----~ei~L~D~~~--~~------~~~~dl~~~~~~~~v~~~~~~~d   81 (332)
                      +..||++.|| |..|..++..|...    |.-     .+++++|.+-  ..      .....+.+.......     ..+
T Consensus        24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~-----~~~   97 (255)
T PF03949_consen   24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKD-----WGS   97 (255)
T ss_dssp             GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------SS
T ss_pred             HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccc-----ccC
Confidence            3469999999 99999999877654    763     7899999875  11      122233333211111     137


Q ss_pred             HHhhcCCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC--chHH
Q 020049           82 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP  145 (332)
Q Consensus        82 ~~~a~~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~--~~t~  145 (332)
                      +.++++++  |++|=+.+.+   |           -+.+++.+.|.+++++.+|+-.|||..  -.++
T Consensus        98 L~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen   98 LLEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            89999999  9999886644   2           145688999999999999988899997  6654

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.95  E-value=0.019  Score=51.85  Aligned_cols=115  Identities=18%  Similarity=0.189  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +++++|.+.  ......++.+..  .++..+. +-++.   .+       .+
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~   86 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL   86 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  899998865  222233343321  1222111 11222   12       23


Q ss_pred             CCCcEEEEcCCCCCC--CCCChhh---hHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRK--PGMTRDD---LFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~--~g~~r~~---~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      ...|++|.++|....  ...+..+   .+..|+.....+.+.+..+   .+.+.+|++|.
T Consensus        87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  146 (255)
T PRK06113         87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS  146 (255)
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence            457999999885321  1222222   2456666655555555432   22345555544

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.95  E-value=0.0052  Score=56.59  Aligned_cols=101  Identities=22%  Similarity=0.284  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC----CC-----CcEEEEEccCC--cH------HHHHHHhcCCCCCeEEEEeCCCCH
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN----PL-----VSVLHLYDVVN--TP------GVTADISHMDTGAVVRGFLGQPQL   82 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~----~~-----~~ei~L~D~~~--~~------~~~~dl~~~~~~~~v~~~~~~~d~   82 (332)
                      ..||+|.|| |..|..++..|...    |+     ...++++|.+-  ..      .....+.+.. ..  .   ...++
T Consensus        25 d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~~--~---~~~~L   97 (279)
T cd05312          25 DQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-EE--K---EGKSL   97 (279)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-Cc--c---cCCCH
Confidence            469999999 99999999877654    65     25899999875  11      1111222211 11  1   13578


Q ss_pred             HhhcC--CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           83 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        83 ~~a~~--~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      .++++  ++|++|=+.+.+   |           -+.+++.+.|.+++++.+|+-.|||..
T Consensus        98 ~e~i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          98 LEVVKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             HHHHHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            99999  999998775433   2           134588899999999999988899986

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.95  E-value=0.0064  Score=52.27  Aligned_cols=104  Identities=17%  Similarity=0.138  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+||||+|.+|+.++...+.+|+  |+..+=+++.+-.+  + +..+...-..+ ..+.+.+++.|-|.||.+-|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~--~-~~~~i~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAA--R-QGVTILQKDIF-DLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccc--c-ccceeeccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999999  89888877622111  0 11000011112 12334578999999999866543


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                       ++..     ..-.+....+...++.. -...++++.
T Consensus        75 -~~~~-----~~~~k~~~~li~~l~~a-gv~RllVVG  104 (211)
T COG2910          75 -SDND-----ELHSKSIEALIEALKGA-GVPRLLVVG  104 (211)
T ss_pred             -CChh-----HHHHHHHHHHHHHHhhc-CCeeEEEEc
Confidence             1211     11233344555555532 355666663

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.95  E-value=0.013  Score=52.91  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++++.++ .......+....  ..+..+. ..++   .++.++       
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFG   90 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35899999999999999999999888  899998874 222222232221  1222211 1122   222232       


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP  139 (332)
                      ..|++|+++|.....   ..+   ....+..|+.....+.+.+.++.   ..+.+++++..
T Consensus        91 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~  151 (258)
T PRK06935         91 KIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASM  151 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCH
Confidence            679999998864311   111   22334556555444444433322   23556666553

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.95  E-value=0.014  Score=52.35  Aligned_cols=153  Identities=11%  Similarity=0.055  Sum_probs=79.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcC-------C-
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALT-------G-   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------~-   88 (332)
                      ++|.|+||+|.+|+.++..|+..|.  +|++.+.+.. ....++.+.. ..++..+. +-+   ++.++++       . 
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSE-DAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCH-HHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999887  8887665431 1111121110 01222111 111   2223332       2 


Q ss_pred             CcEEEEcCCCCCC-------C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHH
Q 020049           89 MDLVIIPAGVPRK-------P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        89 aDiVi~~~g~~~~-------~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                      .|++|..+|....       +  ..+.   ...+..|+.....+.+.+.++   ...+.+++++......          
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~----------  151 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQN----------  151 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccC----------
Confidence            8999999875211       0  1111   223455655545554444322   2245666666432111          


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~  191 (332)
                        ..++.-.++.+.....++.+.+++.++  +..+++.
T Consensus       152 --~~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~  185 (253)
T PRK08642        152 --PVVPYHDYTTAKAALLGLTRNLAAELG--PYGITVN  185 (253)
T ss_pred             --CCCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEE
Confidence              112223466655555667777777765  3445433

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.032  Score=50.56  Aligned_cols=114  Identities=22%  Similarity=0.239  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh------cC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------LT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------~~   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  ......++..   ...+..+. +-.|.+   +.      +.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            45899999999999999999999887  899999876  2222223311   12222211 112321   11      35


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ..|+||.++|......   .+.   ...+..|+.....+.+.+.++.   +.+.+++++.
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS  139 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS  139 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence            6799999998653211   111   2334566666555555554332   2355666654

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.94  E-value=0.034  Score=50.10  Aligned_cols=114  Identities=13%  Similarity=0.125  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (332)
                      .++|.|+||+|.+|..++..|++.|.  ++++.+.++. .....++....  ..+..+. .-++   +..++       .
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            45899999999999999999999987  8888888762 22233343222  1222211 1122   22223       2


Q ss_pred             CCcEEEEcCCCCCCCCC-----ChhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEec
Q 020049           88 GMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  137 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~t  137 (332)
                      ..|+||.++|.......     +....+..|+.....+.+...++.  ..+.+++++
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            57999999986432221     122334566665555555544332  234455544

>PRK08219 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0089  Score=52.60  Aligned_cols=75  Identities=21%  Similarity=0.222  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcC---CCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALT---GMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~---~aDiVi~   94 (332)
                      +++|.|+||+|++|+.++..|++. +  +|+++|++...  ..++.+......+..  .....++.++++   +.|+||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999999887 5  89999986521  112221110111111  111123344444   5899999


Q ss_pred             cCCCC
Q 020049           95 PAGVP   99 (332)
Q Consensus        95 ~~g~~   99 (332)
                      ++|..
T Consensus        78 ~ag~~   82 (227)
T PRK08219         78 NAGVA   82 (227)
T ss_pred             CCCcC
Confidence            98864

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0091  Score=53.25  Aligned_cols=115  Identities=18%  Similarity=0.206  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhc---CCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL---TGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~---~~aDiVi~~   95 (332)
                      .+++.|+||+|.+|..++..|+..|+  +|++++++....  .++........+. ..+...+..+++   ...|+||..
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            46899999999999999999999888  899999865211  1121111001111 111111222333   357999999


Q ss_pred             CCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC----CCcEEEEecC
Q 020049           96 AGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC----PNATVNLISN  138 (332)
Q Consensus        96 ~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~----p~a~viv~tN  138 (332)
                      +|.....   ..+.   ...+..|+.....+.+.+.+..    ..+.++++|.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            8864321   1122   2234456666666665555432    2356666653

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.026  Score=53.50  Aligned_cols=115  Identities=14%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   85 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++++++  .+....++....  .++..+. .-+|   .+++       
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999988  899999876  233333443322  2222111 1123   2222       


Q ss_pred             cCCCcEEEEcCCCCCCC---CCChhh---hHhhh----HHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKP---GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~---g~~r~~---~~~~n----~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +...|++|..+|.....   ..+..+   .+..|    +...+.+.+.+.+. ..+.||+++.
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~-~~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPR-DRGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEeCC
Confidence            23689999998864211   112111   22333    44555566666544 2355666654

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.01  Score=53.46  Aligned_cols=112  Identities=21%  Similarity=0.189  Sum_probs=62.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENALT-------   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~-------   87 (332)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|++..  +....++..    ..+..+. .-.|.   ..++.       
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAAALAAFADALGD----ARFVPVACDLTDAASLAAALANAAAERG   76 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998887  8999998752  222233321    1122111 11222   22232       


Q ss_pred             CCcEEEEcCCCCCCCC---CChh---hhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r~---~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      ..|+||.++|......   .+..   ..+..|......+.+.+...   .+.+.+++++.
T Consensus        77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  136 (257)
T PRK07074         77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGS  136 (257)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcc
Confidence            5799999988643211   1111   12345555555555554322   23445666654

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.054  Score=48.68  Aligned_cols=156  Identities=18%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   85 (332)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.+...   ......++.....  ....+. .-++.          .+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   79 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNGG--SAFSIGANLESLHGVEALYSSLDNE   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEecccCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  888875433   2223333432211  111100 01111          111


Q ss_pred             ------cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHH
Q 020049           86 ------LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        86 ------~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                            ....|++|..+|.....   ..+.   ...+..|+.....+.+.+.+.. ..+.||++|.-....         
T Consensus        80 ~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~---------  150 (252)
T PRK12747         80 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------  150 (252)
T ss_pred             hhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc---------
Confidence                  12689999999864211   1121   2334466555555555444332 346677665443211         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         +.|..-.++.+......+.+.++..++  +..+++..+
T Consensus       151 ---~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~girvn~v  186 (252)
T PRK12747        151 ---SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI  186 (252)
T ss_pred             ---CCCCchhHHHHHHHHHHHHHHHHHHHh--HcCCEEEEE
Confidence               122222344444444556667777665  344544333

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.91  E-value=0.0081  Score=56.46  Aligned_cols=114  Identities=14%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~------   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++..  .....++...  ...+..+. .-+|.   +++++      
T Consensus         6 ~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (322)
T PRK07453          6 KGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRALG   81 (322)
T ss_pred             CCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999887  8999998762  2223334221  11222211 11222   22222      


Q ss_pred             -CCcEEEEcCCCCCC----CCCCh---hhhHhhhHHHHHHH----HHHHHhhCC-CcEEEEec
Q 020049           88 -GMDLVIIPAGVPRK----PGMTR---DDLFNINAGIVRTL----CEGIAKCCP-NATVNLIS  137 (332)
Q Consensus        88 -~aDiVi~~~g~~~~----~g~~r---~~~~~~n~~~~~~i----~~~i~~~~p-~a~viv~t  137 (332)
                       ..|++|+.||....    ...+.   ...+..|......+    .+.+.+... .+.||++|
T Consensus        82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence             48999999985321    11222   23345666544444    444443332 24566554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.90  E-value=0.0061  Score=49.94  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=48.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-------------------HH--HHHHHhcCCCCCeEEEEeC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------------------PG--VTADISHMDTGAVVRGFLG   78 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-------------------~~--~~~dl~~~~~~~~v~~~~~   78 (332)
                      ..||+|+|+ |.+|+.++..|+..|. .++.|+|.+..                   +.  ....+.......++..+..
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            359999999 9999999999999887 49999998751                   01  1122332222345554321


Q ss_pred             C---CCHHhhcCCCcEEEEc
Q 020049           79 Q---PQLENALTGMDLVIIP   95 (332)
Q Consensus        79 ~---~d~~~a~~~aDiVi~~   95 (332)
                      .   .+..+.++++|+||.+
T Consensus        80 ~~~~~~~~~~~~~~d~vi~~   99 (135)
T PF00899_consen   80 KIDEENIEELLKDYDIVIDC   99 (135)
T ss_dssp             HCSHHHHHHHHHTSSEEEEE
T ss_pred             ccccccccccccCCCEEEEe
Confidence            1   2244667899999988

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.90  E-value=0.029  Score=50.65  Aligned_cols=115  Identities=16%  Similarity=0.237  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~   88 (332)
                      .+.+.|+|++|.+|..++..|+..|.  +|+++|..+......++....  ..+..+. .-+|   ..+.+       ..
T Consensus        10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993         10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999988  899988765332233333221  1222211 1122   22222       36


Q ss_pred             CcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           89 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        89 aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                      .|++|.++|.....   ..+   ....+..|+.....+.+.    +.+..+.+.++++|.
T Consensus        86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            89999999874311   112   233455666554444444    433334566766654

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.90  E-value=0.018  Score=54.08  Aligned_cols=115  Identities=16%  Similarity=0.113  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC-------CCCC-eEEEEeCCCCHHhhcCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-------DTGA-VVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-------~~~~-~v~~~~~~~d~~~a~~~aDi   91 (332)
                      .|||+|+|+ |.||+.++..|...|.  +|.++++.+.  ....+...       .... .+.... . + .+.....|+
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~--~~~~i~~~~Gl~i~~~g~~~~~~~~~-~-~-~~~~~~~D~   73 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQ--RLAAYQQAGGLTLVEQGQASLYAIPA-E-T-ADAAEPIHR   73 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechH--HHHHHhhcCCeEEeeCCcceeeccCC-C-C-cccccccCE
Confidence            479999999 9999999999998887  8999998531  11112111       0000 111111 1 1 133568899


Q ss_pred             EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ||++.-.               . -..+..+.+..+. ++..|+.+-|=++..-.     ++++  +|.+++++-
T Consensus        74 viv~vK~---------------~-~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~-----l~~~--~~~~~v~~g  125 (305)
T PRK05708         74 LLLACKA---------------Y-DAEPAVASLAHRLAPGAELLLLQNGLGSQDA-----VAAR--VPHARCIFA  125 (305)
T ss_pred             EEEECCH---------------H-hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHH-----HHHh--CCCCcEEEE
Confidence            9998421               1 1234445555544 78888888898887643     2343  566677654

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.021  Score=50.50  Aligned_cols=34  Identities=18%  Similarity=0.073  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +++.|+||+|.+|+.++..|+..|.  +|+++|+++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999888  999999876

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=96.90  E-value=0.00074  Score=62.72  Aligned_cols=97  Identities=23%  Similarity=0.263  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||.|+||+|++|+.+...|...++  +++.++..+     .|+.+..   .+.      ++-+. ...|+||++|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence            7999999999999999999998887  888887653     1111110   000      11121 25789999987642


Q ss_pred             CC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049          101 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus       101 ~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      ..  .........-|......+++...+.  ++.+|.+
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~--~~~li~~   99 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKER--GARLIHI   99 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHC--T-EEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHc--CCcEEEe
Confidence            11  1234455677889999999988865  4555554

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.89  E-value=0.004  Score=58.51  Aligned_cols=121  Identities=22%  Similarity=0.238  Sum_probs=72.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHH---HHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~---dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|+|+ |.||+-++..|.+.|.  .|.++-+.+. +....   .+.+........... .++ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            69999999 9999999999999884  6666665431 11111   111111100111111 223 46778999999995


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce-EEeehhh
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL-LGVTMLD  169 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv-iG~~~ld  169 (332)
                      -.                --..+..+.+..+. |+.+|+..=|=.+..     +.+++.  +|.+++ .|+|...
T Consensus        76 Ka----------------~q~~~al~~l~~~~~~~t~vl~lqNG~g~~-----e~l~~~--~~~~~il~G~~~~~  127 (307)
T COG1893          76 KA----------------YQLEEALPSLAPLLGPNTVVLFLQNGLGHE-----EELRKI--LPKETVLGGVTTHG  127 (307)
T ss_pred             cc----------------ccHHHHHHHhhhcCCCCcEEEEEeCCCcHH-----HHHHHh--CCcceEEEEEeeee
Confidence            21                12345666677666 566777777888776     333443  555555 4676433

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.89  E-value=0.0068  Score=50.48  Aligned_cols=74  Identities=23%  Similarity=0.297  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+.++|+|+|+ |.+|..++..|...+ ..++.++|.+..  ...+.++....  ....    ..+.++.++++|+||++
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~Dvvi~~   88 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDLEELLAEADLIINT   88 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecchhhccccCCEEEeC
Confidence            44579999999 999999999998876 348999998762  22233332110  0111    12455668999999999


Q ss_pred             CCCC
Q 020049           96 AGVP   99 (332)
Q Consensus        96 ~g~~   99 (332)
                      ...+
T Consensus        89 ~~~~   92 (155)
T cd01065          89 TPVG   92 (155)
T ss_pred             cCCC
Confidence            6544

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR02415 23BDH acetoin reductases

Probab=96.89  E-value=0.034  Score=49.86  Aligned_cols=112  Identities=17%  Similarity=0.282  Sum_probs=64.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG   88 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~   88 (332)
                      ++.|+||+|.+|..++..|++.|.  +|++++.++  .+....++....  ..+..+. .-+|.   .++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999887  899999875  222333343322  2222211 11231   122       235


Q ss_pred             CcEEEEcCCCCCC-C--CCChh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEec
Q 020049           89 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        89 aDiVi~~~g~~~~-~--g~~r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .|+||+++|.... +  +.+..   ..+..|+..    ++.+.+.+.+...++.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            6999999886321 1  22222   224455443    344555555544445666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05855 short chain dehydrogenase; Validated

Probab=96.87  E-value=0.05  Score=54.89  Aligned_cols=118  Identities=16%  Similarity=0.180  Sum_probs=69.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh------
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA------   85 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------   85 (332)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.+++.  ....+.++....  ..+..+. .-+|.+   +.      
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~  388 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRA  388 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3447899999999999999999999998  899999876  223333343221  1222211 112321   11      


Q ss_pred             -cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           86 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        86 -~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                       +...|++|.++|.....   ..+.   ...+..|+..    .+.+.+.+.+....+.||++|.-
T Consensus       389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~  453 (582)
T PRK05855        389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA  453 (582)
T ss_pred             hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence             23579999999875321   1122   2233456443    44455555555545667776553

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.87  E-value=0.017  Score=51.76  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      ++|.|+||+|++|+.++..|+..|.  +|++++++..  .....++....  .++..+. .-.|.          .+.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            3799999999999999999999888  8999998762  12222232211  1222211 11222          23356


Q ss_pred             CCcEEEEcCCCCCC-CC--CCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRK-PG--MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~-~g--~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN  138 (332)
                      +.|+||..++.... +.  .+.   ......|......+.+.+    ++.. ...++++|.
T Consensus        78 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~~v~~ss  137 (255)
T TIGR01963        78 GLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG-WGRIINIAS  137 (255)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEEcc
Confidence            78999999886421 11  111   223345655544454444    4333 334555554

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK09242 tropinone reductase; Provisional

Probab=96.87  E-value=0.058  Score=48.61  Aligned_cols=116  Identities=16%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC----------HHhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d----------~~~a~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++++++.  .+....++.......++..+.. -.+          ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999888  899999876  2333334433211122322111 112          11234


Q ss_pred             CCCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                      ...|+||.++|.... +  ..+.   ...+..|+.....+.+.    +.+. +.+.+|++|.
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS  147 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS  147 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence            567999999986321 1  1122   22344555544444444    4333 3455666654

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.86  E-value=0.012  Score=52.08  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +||.|||. |.+|..+...+.... .+.-+.+||.+..+..  .+...-..+.      .+++++.+.+.|++|.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            58999998 999999998887663 3456788998763222  2222211111      1356677799999999984  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                                    .+.+++++.++-+.+.|.+|+-++--+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          5678899999998888886665544443

>PRK06196 oxidoreductase; Provisional

Probab=96.86  E-value=0.013  Score=54.97  Aligned_cols=111  Identities=21%  Similarity=0.156  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCH---Hhh-------cC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~---~~a-------~~   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++..  .....++....   .+..  .-+|.   +++       +.
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~--Dl~d~~~v~~~~~~~~~~~~   98 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVML--DLADLESVRAFAERFLDSGR   98 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEc--cCCCHHHHHHHHHHHHhcCC
Confidence            35799999999999999999999988  8999998762  22222232110   1110  11221   111       24


Q ss_pred             CCcEEEEcCCCCCCCC-C---ChhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG-M---TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g-~---~r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ..|++|+.+|....+. .   .....+..|...    ++.+.+.+.+. ..+.||++|.
T Consensus        99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~-~~~~iV~vSS  156 (315)
T PRK06196         99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAG-AGARVVALSS  156 (315)
T ss_pred             CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCeEEEECC
Confidence            6899999998643221 1   112234455444    55555555543 2356666654

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0044  Score=55.12  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ||+.|+||+|.+|+.++..|+..|.  +|+++|+++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999888  899999875

>PRK06198 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.062  Score=48.42  Aligned_cols=116  Identities=15%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-i~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------   85 (332)
                      +.++|.|+||+|.+|+.++..|...|.  + |+++|++.  ......++...  ...+..+. +-++.   .++      
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998887  6 99999875  22222233222  12222111 11232   122      


Q ss_pred             -cCCCcEEEEcCCCCCCCC---CChh---hhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 020049           86 -LTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (332)
Q Consensus        86 -~~~aDiVi~~~g~~~~~g---~~r~---~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN  138 (332)
                       +...|++|.++|......   .+..   ..+..|+.....+    .+.+.+....+.++++|.
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence             236899999998653221   1222   2244555444444    444443333355666654

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.021  Score=54.11  Aligned_cols=114  Identities=18%  Similarity=0.082  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++++++  ++....++....  ..+..+. +-+|   .+++       +
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   82 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG   82 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999999998  899999876  233333443322  1222111 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|++|.++|.....   ..+   ....+..|+...    +.+.+.+.+.. .+.+|+++.
T Consensus        83 g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS  143 (330)
T PRK06139         83 GRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS  143 (330)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            4679999999864321   111   122344454433    34444444432 456666643

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.86  E-value=0.013  Score=52.28  Aligned_cols=115  Identities=22%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCH---HhhcC-----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT-----   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~~-----   87 (332)
                      .++|.|+||+|.+|..++..|++.|+  ++++. +.+.  .......+...  ...+..+.. -+|.   .+.++     
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEK   80 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999998887  78887 8865  22222233321  122332211 1222   22222     


Q ss_pred             --CCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           88 --GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                        ..|+||..+|.....   ..+.   ...+..|......+.+.+..+.   ....+++++.
T Consensus        81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS  142 (247)
T PRK05565         81 FGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISS  142 (247)
T ss_pred             hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence              789999998864211   1111   2334556666555555544332   1234555543

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.85  E-value=0.052  Score=48.54  Aligned_cols=76  Identities=16%  Similarity=0.146  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   85 (332)
                      +++|.|+||+|.+|+.++..|++.|.  ++++.+. ++  ......++....  .++..+. ..++   ..++       
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   77 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYARDAAAAEETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQSA   77 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999887  7777653 32  222333343221  1222211 1122   2222       


Q ss_pred             cCCCcEEEEcCCCC
Q 020049           86 LTGMDLVIIPAGVP   99 (332)
Q Consensus        86 ~~~aDiVi~~~g~~   99 (332)
                      +...|++|+++|..
T Consensus        78 ~~~id~li~~ag~~   91 (248)
T PRK06947         78 FGRLDALVNNAGIV   91 (248)
T ss_pred             cCCCCEEEECCccC
Confidence            24689999999853

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.85  E-value=0.0075  Score=55.24  Aligned_cols=90  Identities=12%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .|||+|||+ |.+|++++..|...+..  .+++.+|.++.+     +       ....   ..+..++++++|+||++. 
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav-   65 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV-   65 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence            479999999 99999999999887632  358998876421     0       0121   124457788999999984 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                       +              -..+.++.+.+..+-++..||...+-+.
T Consensus        66 -k--------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 -K--------------PDLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             -C--------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence             1              2334455555554433344555555554

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.84  E-value=0.011  Score=61.53  Aligned_cols=90  Identities=19%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--CCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVi~~   95 (332)
                      .+.|||.|+||+|++|++++..|...++  ++... ..       |+.+.            ..+...+  .+.|+||++
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~~-------~l~d~------------~~v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-KG-------RLEDR------------SSLLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-cc-------ccccH------------HHHHHHHHhhCCCEEEEC
Confidence            3458999999999999999999988776  55211 00       01100            0011222  268999999


Q ss_pred             CCCCCCCC-----CChhhhHhhhHHHHHHHHHHHHhhCC
Q 020049           96 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCP  129 (332)
Q Consensus        96 ~g~~~~~g-----~~r~~~~~~n~~~~~~i~~~i~~~~p  129 (332)
                      |+....+.     ....+....|+....++++..++...
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            97643221     23456678899999999999998754

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.019  Score=52.46  Aligned_cols=34  Identities=26%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.++++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998888  899999875

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.84  E-value=0.092  Score=47.47  Aligned_cols=156  Identities=15%  Similarity=0.129  Sum_probs=82.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  .+++...+.   ......++....  ..+..+. +-+|.+   +.       
T Consensus         7 ~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~   82 (261)
T PRK08936          7 GKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVKE   82 (261)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  777776644   222333343321  2222111 122322   11       


Q ss_pred             cCCCcEEEEcCCCCCCC---CCChh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           86 LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~---g~~r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      +...|++|..+|.....   ..+..   ..+..|+..    .+.+.+.+.+....+.+|++|.-...            .
T Consensus        83 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~------------~  150 (261)
T PRK08936         83 FGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ------------I  150 (261)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc------------C
Confidence            23579999999864321   11121   234555433    34455555555445666666542111            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..|..-.++.+......+...++..+.  +..|++.++
T Consensus       151 ~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v  186 (261)
T PRK08936        151 PWPLFVHYAASKGGVKLMTETLAMEYA--PKGIRVNNI  186 (261)
T ss_pred             CCCCCcccHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            223333455543333345556666553  345554444

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=96.84  E-value=0.0053  Score=56.81  Aligned_cols=93  Identities=26%  Similarity=0.320  Sum_probs=54.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH-HHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      .++|+|+|. |.||..++..|...|+  .+..++.+...+. ..... ..    +..........++.++||+||++.  
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~-lg----v~d~~~~~~~~~~~~~aD~Vivav--   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALE-LG----VIDELTVAGLAEAAAEADLVIVAV--   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhh-cC----cccccccchhhhhcccCCEEEEec--
Confidence            468999998 9999999999999999  5555555442211 11111 10    000000111257789999999994  


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  136 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~  136 (332)
                      |              +..+.++.+++..+- |+++|.=+
T Consensus        73 P--------------i~~~~~~l~~l~~~l~~g~iv~Dv   97 (279)
T COG0287          73 P--------------IEATEEVLKELAPHLKKGAIVTDV   97 (279)
T ss_pred             c--------------HHHHHHHHHHhcccCCCCCEEEec
Confidence            3              444455555555433 46655433

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.052  Score=48.54  Aligned_cols=147  Identities=14%  Similarity=0.121  Sum_probs=75.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   85 (332)
                      .++|.|+||+|++|++++..|++.|.  ++++.....   .......+....  ..+..+. +.++   ...+       
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAKKRAEEMNETLKMVKENG--GEGIGVLADVSTREGCETLAKATIDR   81 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHcC--CeeEEEEeccCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999888  776654332   122222222211  1111111 1112   1122       


Q ss_pred             cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           86 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      +...|+||+++|......   .+.   ...+..|+.....+++.+.++- +.+.+|+++.-..            +.+.+
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~------------~~~~~  149 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAG------------IRPAY  149 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhc------------cCCCC
Confidence            346799999998643211   122   2233445554444444444432 2355666554111            11233


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhC
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      +...++.+......+...+++.++
T Consensus       150 ~~~~Y~~sK~~~~~~~~~l~~~~~  173 (252)
T PRK06077        150 GLSIYGAMKAAVINLTKYLALELA  173 (252)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHh
Confidence            333444443334455666677664

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0063  Score=54.96  Aligned_cols=36  Identities=25%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.++|.|+||+|.+|..++..|++.|.  +|+++|++.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346899999999999999999999887  899999875

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.83  E-value=0.01  Score=56.10  Aligned_cols=67  Identities=18%  Similarity=0.135  Sum_probs=46.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+.+||+|||. |.+|.++|..|...|+  +|+..+.+....... .....    +..    .+..++++.||+|+++.
T Consensus        15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G----~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADG----FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCC----Cee----CCHHHHHhcCCEEEEcC
Confidence            34578999999 9999999999998888  888877654221111 11111    111    25678999999999984

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0036  Score=56.60  Aligned_cols=35  Identities=14%  Similarity=0.126  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++++++
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999888  899999875

>PRK08264 short chain dehydrogenase; Validated

Probab=96.80  E-value=0.016  Score=51.57  Aligned_cols=142  Identities=12%  Similarity=0.074  Sum_probs=76.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE----EeCCCCHHhhc---CCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENAL---TGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~----~~~~~d~~~a~---~~aDiV   92 (332)
                      .++|.|+||+|.+|+.++..|+..|. .+|++++++.....  +   .  ...+..    .....++++.+   ...|+|
T Consensus         6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~--~---~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVT--D---L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhh--h---c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            35899999999999999999998875 26888988652211  1   1  111221    11112223333   358999


Q ss_pred             EEcCCCCCCCC----CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           93 IIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        93 i~~~g~~~~~g----~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      |.++|.....+    .+.   ...+..|......+.+.+.+.   ...+.++++|......            +.+....
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~------------~~~~~~~  145 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV------------NFPNLGT  145 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc------------CCCCchH
Confidence            99998732211    121   223445666555565554432   2345666666533211            2233334


Q ss_pred             EEeehhhHHHHHHHHHHHh
Q 020049          163 LGVTMLDVVRANTFVAEVL  181 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l  181 (332)
                      ++.+......+...++..+
T Consensus       146 y~~sK~a~~~~~~~l~~~~  164 (238)
T PRK08264        146 YSASKAAAWSLTQALRAEL  164 (238)
T ss_pred             hHHHHHHHHHHHHHHHHHh
Confidence            4554433444555566655

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.80  E-value=0.012  Score=53.54  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.++
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35799999999999999999999998  899999875

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.023  Score=51.18  Aligned_cols=114  Identities=19%  Similarity=0.184  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.+++.  .+....++....  .++..+. .-+|.   .+       .+
T Consensus         9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T PRK05867          9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999988  899999876  223333343322  2222211 11221   12       23


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHH----HHHhhCCCcEEEEec
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLIS  137 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~t  137 (332)
                      ...|++|+++|.....   ..+.   ...+..|+.....+.+    .+.+....+.|++++
T Consensus        85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            4789999999864321   1122   2233455554444444    443333335566554

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.79  E-value=0.071  Score=47.28  Aligned_cols=72  Identities=19%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC------HHhhcCCCcEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI   93 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~a~~~aDiVi   93 (332)
                      |+|+|+||+|.+|..++..|+..+....+++.+.+....    ..    ..++..+. +-++      +.+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998876434677777654211    11    11222111 1112      223457899999


Q ss_pred             EcCCCCC
Q 020049           94 IPAGVPR  100 (332)
Q Consensus        94 ~~~g~~~  100 (332)
                      +++|...
T Consensus        73 ~~aG~~~   79 (235)
T PRK09009         73 NCVGMLH   79 (235)
T ss_pred             ECCcccc
Confidence            9998753

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.79  E-value=0.11  Score=47.10  Aligned_cols=154  Identities=14%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hh
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------EN   84 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~   84 (332)
                      +.++|.|+||++.+|..++..|+..|.  +|++.+...   ......++.... ..++..+. +-+|.          .+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~   83 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNSNVEEANKIAEDLEQKY-GIKAKAYPLNILEPETYKELFKKIDE   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999988  788875433   223333443211 12222211 11221          11


Q ss_pred             hcCCCcEEEEcCCCCCC-------C--CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 020049           85 ALTGMDLVIIPAGVPRK-------P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~-------~--g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~  148 (332)
                      .+...|++|..+|....       +  ..+.   ...+..|+.    ..+.+.+.+++. +.+.||++|...+..     
T Consensus        84 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~-----  157 (260)
T PRK08416         84 DFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKV-GGGSIISLSSTGNLV-----  157 (260)
T ss_pred             hcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhcc-CCEEEEEEecccccc-----
Confidence            23468999999875311       1  0111   112223333    334455555432 345666665433221     


Q ss_pred             HHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCce
Q 020049          149 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDV  190 (332)
Q Consensus       149 ~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~  190 (332)
                             ..|..-.++.+......+.+.++..++  +..|++
T Consensus       158 -------~~~~~~~Y~asK~a~~~~~~~la~el~--~~gi~v  190 (260)
T PRK08416        158 -------YIENYAGHGTSKAAVETMVKYAATELG--EKNIRV  190 (260)
T ss_pred             -------CCCCcccchhhHHHHHHHHHHHHHHhh--hhCeEE
Confidence                   112222345555555566777777764  344543

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.78  E-value=0.0074  Score=57.37  Aligned_cols=98  Identities=20%  Similarity=0.259  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||. |.+|+.+|..|...|.  +|..+|........  ... .    .. .   .++++.++.||+|++....
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~--~~~-~----~~-~---~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAE--KEL-G----AE-Y---RPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhH--HHc-C----CE-e---cCHHHHHhhCCEEEEeCCC
Confidence            3469999999 9999999999987777  89999986522111  111 1    11 1   2578889999999998521


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      .  +         .+...+..  +.+...-|++++|+++  ..+|.-
T Consensus       215 t--~---------~T~~~i~~--~~~~~mk~ga~lIN~aRg~~vd~~  248 (333)
T PRK13243        215 T--K---------ETYHMINE--ERLKLMKPTAILVNTARGKVVDTK  248 (333)
T ss_pred             C--h---------HHhhccCH--HHHhcCCCCeEEEECcCchhcCHH
Confidence            1  1         11111211  2333334788999985  555544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.78  E-value=0.011  Score=55.68  Aligned_cols=100  Identities=18%  Similarity=0.239  Sum_probs=64.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|+|+ |.+|..++..|...+. .+|+++|++..+  ..+..+.     .....   ..++++++.++|+||.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT  246 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence            4579999999 9999999988887553 389999987522  2333221     12221   135678889999999997


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHH-Hhh-CCCcEEEEecCCCCchH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNSTV  144 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i-~~~-~p~a~viv~tNP~~~~t  144 (332)
                      +.+..                .++.+.+ ... .+..+++-.++|-|+-.
T Consensus       247 ~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~~  280 (311)
T cd05213         247 GAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIEP  280 (311)
T ss_pred             CCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCch
Confidence            65521                1222222 111 23557788899999763

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.78  E-value=0.012  Score=56.73  Aligned_cols=56  Identities=25%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||+|||.+|.+|..++..|.+. ...+|+.+|.+          +.          ..++.++++++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~-~~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTR-MQLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhc-CCCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            469999999899999999999875 23389999973          11          0234567899999999985

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.78  E-value=0.0052  Score=53.57  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=49.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEE--eCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~--~~~~d~~~a~~~aDiVi~   94 (332)
                      +.+++.|+||+|.+|..++..|...+.  +|.+++++..  .....++.+.. ...+...  ....++.++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            446999999889999999999988776  8999988752  22233333211 1222221  111234578899999888


Q ss_pred             cCC
Q 020049           95 PAG   97 (332)
Q Consensus        95 ~~g   97 (332)
                      +..
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK09186 flagellin modification protein A; Provisional

Probab=96.77  E-value=0.02  Score=51.47  Aligned_cols=35  Identities=26%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .++|.|+||+|.+|..++..|+..|+  +|++.+++.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            46899999999999999999999888  899998865

>PRK07023 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.0078  Score=53.86  Aligned_cols=35  Identities=14%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +|+|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            36899999999999999999998887  899999865

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=96.77  E-value=0.0038  Score=57.76  Aligned_cols=93  Identities=13%  Similarity=0.116  Sum_probs=60.6

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCCCCC
Q 020049           24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK  101 (332)
Q Consensus        24 ~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~~~~  101 (332)
                      .|+||+|++|++++..|+..++  +++++.... +   .|+.+            ..++.+.++  ++|+||++|+....
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~-~---~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK-E---LDLTR------------QADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC--cEEEeeccc-c---CCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence            3899999999999999988876  555443221 0   11111            123444444  57999999876421


Q ss_pred             ---CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 020049          102 ---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus       102 ---~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                         ......++...|.....++++.+++....-+|.
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~   98 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF   98 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence               123345677889999999999999875443333

>PRK06398 aldose dehydrogenase; Validated

Probab=96.75  E-value=0.02  Score=51.90  Aligned_cols=148  Identities=13%  Similarity=0.141  Sum_probs=79.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhh-------cCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi   91 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++....     ..   ..+. ......+.+++       +...|+
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~-----~~---~~~~~D~~~~~~i~~~~~~~~~~~~~id~   75 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYN-----DV---DYFKVDVSNKEQVIKGIDYVISKYGRIDI   75 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccC-----ce---EEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35899999999999999999999988  8999998652110     00   0011 01001112222       346899


Q ss_pred             EEEcCCCCCCC---CCCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           92 VIIPAGVPRKP---GMTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        92 Vi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      +|+++|.+...   ..+.   ...+..|+.....+    .+.+.+ ...+.||++|.-...            .+.+..-
T Consensus        76 li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~~------------~~~~~~~  142 (258)
T PRK06398         76 LVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLK-QDKGVIINIASVQSF------------AVTRNAA  142 (258)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHH-cCCeEEEEeCcchhc------------cCCCCCc
Confidence            99999864321   1122   22345565544444    444433 234566666542211            1123333


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .++.+......+.+.++..++  +. |++..+
T Consensus       143 ~Y~~sKaal~~~~~~la~e~~--~~-i~vn~i  171 (258)
T PRK06398        143 AYVTSKHAVLGLTRSIAVDYA--PT-IRCVAV  171 (258)
T ss_pred             hhhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence            455544334456666777665  33 554444

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.75  E-value=0.073  Score=48.42  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=28.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .+.|+||+|.+|..++..|+..|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            689999999999999999999988  88887543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.75  E-value=0.02  Score=47.29  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=29.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ||+|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899999 9999999999999987 4899999874

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN00016 RNA-binding protein; Provisional

Probab=96.75  E-value=0.011  Score=57.01  Aligned_cols=36  Identities=25%  Similarity=0.140  Sum_probs=32.4

Q ss_pred             CCCeEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~Ii----Ga~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +++||.|+    ||+|++|+.++..|+..|+  +|++++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            34689999    9999999999999999998  999999875

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.068  Score=48.21  Aligned_cols=155  Identities=15%  Similarity=0.142  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC------cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPGVTADISHMDTGAVVRGFL-GQPQL---ENA----   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~------~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a----   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  ++++++.+.      ......++....  ..+..+. .-++.   ++.    
T Consensus         8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~   83 (257)
T PRK12744          8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDA   83 (257)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHH
Confidence            35899999999999999999998887  766665432      112222232221  1222211 11222   222    


Q ss_pred             ---cCCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchHHHHHHHHHHh
Q 020049           86 ---LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        86 ---~~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t~~~~~~~~~~  154 (332)
                         +...|++|+++|.....   ..+   ....+.-|+.....+.+.+.+.. +.+.++++ +......           
T Consensus        84 ~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~-----------  152 (257)
T PRK12744         84 KAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF-----------  152 (257)
T ss_pred             HHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc-----------
Confidence               23679999999864321   112   22334556665555555554433 33434433 3322211           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                        .|..-.++.+......+.+.+++.++  +..|++..+
T Consensus       153 --~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v  187 (257)
T PRK12744        153 --TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV  187 (257)
T ss_pred             --CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence              12223456655555667778888776  445544444

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.74  E-value=0.011  Score=53.66  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999988  899999875

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.026  Score=51.18  Aligned_cols=115  Identities=15%  Similarity=0.129  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---H----Hhhc-
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---L----ENAL-   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~----~~a~-   86 (332)
                      +++|.|+||+|.+|..++..|++.+ .  .|+++++++.   .....++.... ..++..+. +-+|   .    ++.. 
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHh
Confidence            4589999999999999999998874 6  8999998762   22334444321 11222211 1112   1    1111 


Q ss_pred             -CCCcEEEEcCCCCCCCCCC---hh---hhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPGMT---RD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g~~---r~---~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                       .+.|++|..+|........   ..   +.+..|+..    .+.+.+.+.+... +.|+++|.
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS  146 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS  146 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence             3799999988775322111   11   234555543    3456666665543 45555544

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.73  E-value=0.007  Score=56.45  Aligned_cols=63  Identities=17%  Similarity=0.316  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||. |.||+.++..|...|+  ++.++|+++.   ..++....  .  ..   ..+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g--~--~~---~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG--A--VS---VETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC--C--ee---cCCHHHHHhcCCEEEEeC
Confidence            58999999 9999999999999998  8899998652   12232221  1  11   124467789999999984

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.074  Score=47.49  Aligned_cols=157  Identities=16%  Similarity=0.122  Sum_probs=79.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCe-EEE-EeCCCCHHhhc-------CC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAV-VRG-FLGQPQLENAL-------TG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~-v~~-~~~~~d~~~a~-------~~   88 (332)
                      ..+.|+||+|.+|+.++..|+..|.  .+++.+.+.   ......++........ +.. ......+++++       ..
T Consensus         3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            3699999999999999999999887  788877543   1222223332211111 111 11111222222       36


Q ss_pred             CcEEEEcCCCCCCC----CCCh---hhhHhhhHHHHHHHHHHHHhh----C--CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           89 MDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC----C--PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        89 aDiVi~~~g~~~~~----g~~r---~~~~~~n~~~~~~i~~~i~~~----~--p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      .|+||.++|.....    ..+.   ...+..|+.....+.+...++    .  .++.++++|......            
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------  148 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL------------  148 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC------------
Confidence            79999999864321    1121   233556666544444433322    1  135566666543221            


Q ss_pred             CCCCC-ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPK-KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~-kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|.. -.++.+......+...+++.+.  +..+++.++
T Consensus       149 ~~~~~~~~Y~~sKaa~~~~~~~la~~~~--~~~i~v~~i  185 (248)
T PRK06123        149 GSPGEYIDYAASKGAIDTMTIGLAKEVA--AEGIRVNAV  185 (248)
T ss_pred             CCCCCccchHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            11111 1244443333456666777663  344544443

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.72  E-value=0.055  Score=48.37  Aligned_cols=114  Identities=14%  Similarity=0.163  Sum_probs=62.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      +++.|+||+|.+|..++..|+..|.  ++++. +++.  .+....++....  ..+..+. .-+|   ...++       
T Consensus         5 ~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          5 KVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSRKAAEETAEEIEALG--RKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999887  76664 4444  222233343222  2222211 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCC-C--CCChh---hhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-~--g~~r~---~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      ...|+||..+|.... +  ..+..   ..+..|......+++.+.++.   +.+.|+++|.
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS  141 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSS  141 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            358999999875321 1  11111   123455555555555554432   3346666654

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.71  E-value=0.0063  Score=56.61  Aligned_cols=97  Identities=20%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ...+|+|+|+ |.+|..++..|...|.  +|+++|+++...  ........ ..+.    ..++.+.++++|+||.+...
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC-eeec----HHHHHHHhccCCEEEECCCh
Confidence            3468999999 9999999999988886  899999875211  11111111 1111    23567888999999998521


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCch
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNST  143 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~  143 (332)
                      .         ++  +    .+   .+....|++++|.+ ++|-.+-
T Consensus       220 ~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~td  247 (287)
T TIGR02853       220 L---------VL--T----AD---VLSKLPKHAVIIDLASKPGGTD  247 (287)
T ss_pred             H---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCCC
Confidence            1         01  1    11   23333467888877 5887664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02712 arogenate dehydrogenase

Probab=96.70  E-value=0.012  Score=61.09  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=46.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-CCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVi~~~   96 (332)
                      .+++||+|||. |.+|..++..|...|+  +|+.+|.+.....+.++   .    +...   ++..+.+ ++||+||++.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEEcC
Confidence            34589999998 9999999999998886  89999987422222211   1    1222   2455544 5799999984

>PRK08324 short chain dehydrogenase; Validated

Probab=96.70  E-value=0.038  Score=57.67  Aligned_cols=114  Identities=20%  Similarity=0.264  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++|++..  ......+...   ..+..+. .-+|   ..+++       
T Consensus       422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            36899999999999999999999887  8999998862  2222233321   1122111 1122   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN  138 (332)
                      .+.|+||.++|......   .+.   ...+..|......+    .+.+++....+.|++++.
T Consensus       497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            36899999998643211   111   12234454444444    444444333356666653

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.017  Score=51.52  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH---hhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a~-------   86 (332)
                      ++++.|+||+|.+|..++..|+++|.  +|+++|+++.  .....++....  ..+..+. .-+|.+   .++       
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF   81 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999988  8999998762  22222232211  1222111 112322   222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|++|.++|.....   ..+   ....+..|+....    .+.+.+.+. ..+.++++|.
T Consensus        82 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS  142 (241)
T PRK07454         82 GCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRAR-GGGLIINVSS  142 (241)
T ss_pred             CCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            3589999999864321   111   1223445555433    344444433 2355666654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.70  E-value=0.015  Score=55.32  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=50.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------------------HHH--HHHHhcCCCCCeEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------------------PGV--TADISHMDTGAVVRGF   76 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------------------~~~--~~dl~~~~~~~~v~~~   76 (332)
                      ..||+|||+ |.+|+.++..|+..|.. +|.|+|.+..                     +..  +..+........+..+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGvg-~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGIG-KLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            358999999 99999999999999874 8999998740                     011  1223333223344433


Q ss_pred             eC---CCCHHhhcCCCcEEEEcC
Q 020049           77 LG---QPQLENALTGMDLVIIPA   96 (332)
Q Consensus        77 ~~---~~d~~~a~~~aDiVi~~~   96 (332)
                      ..   ..+.++.++++|+||.+.
T Consensus       102 ~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        102 VTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             eccCCHHHHHHHhcCCCEEEEcC
Confidence            21   123567789999999984

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.70  E-value=0.0062  Score=54.37  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=59.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |+|+||+|.+|+.++..|+..++  +|..+=++........+.+..  ..+..  +.....+.++|+|+|.|+++.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g--~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALG--AEVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTT--TEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhccc--ceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            78999999999999999999776  677776655333344455443  22221  1112346678999999999865332


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                                ....+....+++...+.+
T Consensus        77 ----------~~~~~~~~~li~Aa~~ag   94 (233)
T PF05368_consen   77 ----------PSELEQQKNLIDAAKAAG   94 (233)
T ss_dssp             ----------CCHHHHHHHHHHHHHHHT
T ss_pred             ----------hhhhhhhhhHHHhhhccc
Confidence                      112445556677777665

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.69  E-value=0.021  Score=51.67  Aligned_cols=114  Identities=15%  Similarity=0.153  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      .+++.|+||+|++|.+++..|+..|.  ++++.+...   .......+....  ..+..+. .-+|   ..+++      
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~   84 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA   84 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998887  787776543   122222332221  2232221 1123   22222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhCC---CcEEEEec
Q 020049           87 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP---NATVNLIS  137 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~p---~a~viv~t  137 (332)
                       ...|+||.++|.....   ..+   ....+..|+.....+.+.+.++.+   .+.+++.+
T Consensus        85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~  145 (258)
T PRK09134         85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMI  145 (258)
T ss_pred             cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEEC
Confidence             3469999999864321   122   233456677666666666555432   34555543

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.67  E-value=0.02  Score=53.92  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|+|. |.+|+.+|..|..-|.  +|+.+|......           +.+..+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~-----------~~~~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW-----------PGVQSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC-----------CCceeecccccHHHHHhcCCEEEECCCC
Confidence            3469999999 9999999999987777  999999754110           0011111123678999999999998421


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCc
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  142 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~  142 (332)
                      .           ..+..++.  .+.+....|++++||++  .-+|-
T Consensus       201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~vVde  233 (312)
T PRK15469        201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLARGVHVVE  233 (312)
T ss_pred             C-----------HHHHHHhH--HHHHhcCCCCcEEEECCCccccCH
Confidence            1           12222222  23444445789999986  44443

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.057  Score=48.91  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~   86 (332)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.+++.  ......++.......++..+. .-+|.+          +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999988  899999876  233333343321112332211 122321          123


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|++|.++|......   .+.   ...+..|    ....+.+.+.+++. ..+.|+++|.
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  146 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRAS-AAASIVCVNS  146 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-CCcEEEEecc
Confidence            46799999998643211   111   1122233    33455555656543 3456666654

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.66  E-value=0.011  Score=53.95  Aligned_cols=98  Identities=23%  Similarity=0.260  Sum_probs=62.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-CCcEEEEcCCCCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK  101 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVi~~~g~~~~  101 (332)
                      |+|+|++|+||+++...|...|+  +|..+-++......  ..+.    .+...   ..+.+... ++|.||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~----~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHP----NVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCc----ccccc---chhhhcccCCCCEEEECCCCccc
Confidence            68999999999999999999998  88888876522111  1111    11111   11233333 79999999997632


Q ss_pred             CC----CChhhhHhhhHHHHHHHHHHHHhhCCCc
Q 020049          102 PG----MTRDDLFNINAGIVRTLCEGIAKCCPNA  131 (332)
Q Consensus       102 ~g----~~r~~~~~~n~~~~~~i~~~i~~~~p~a  131 (332)
                      ..    +....+..--+...+.+++.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            21    1122333445778888899998766444

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.66  E-value=0.012  Score=53.70  Aligned_cols=68  Identities=18%  Similarity=0.228  Sum_probs=45.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||+ |.+|+.++..|...++ ...+.++|.+...  ...+.+..  ......   .+..+++++||+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence            58999999 9999999999988774 3456788876422  22232211  112221   34567789999999985

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.65  E-value=0.011  Score=55.13  Aligned_cols=56  Identities=18%  Similarity=0.348  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||.+|.||..++..|+..|.  +|.+++...                       .++++..+.||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            346899999966999999999999888  888887542                       2467888999999999876


Q ss_pred             C
Q 020049           99 P   99 (332)
Q Consensus        99 ~   99 (332)
                      +
T Consensus       213 ~  213 (301)
T PRK14194        213 P  213 (301)
T ss_pred             h
Confidence            5

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.65  E-value=0.0078  Score=54.63  Aligned_cols=121  Identities=18%  Similarity=0.188  Sum_probs=78.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEccCC--c--HH----HHHHHhcCCCCCeEEEEeCCCCH
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN--T--PG----VTADISHMDTGAVVRGFLGQPQL   82 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~--~--~~----~~~dl~~~~~~~~v~~~~~~~d~   82 (332)
                      ..||+|.|| |..|..++..|...+.         ..+++++|..-  .  +.    ....+.+.   .+-..  ...++
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~---~~~~~--~~~~L   98 (254)
T cd00762          25 EHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARF---ANPER--ESGDL   98 (254)
T ss_pred             hcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHH---cCccc--ccCCH
Confidence            469999999 9999999987765432         24899999875  1  11    01111101   01011  12478


Q ss_pred             HhhcC--CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC--chHHHHHHHHHHhCCCC
Q 020049           83 ENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYD  158 (332)
Q Consensus        83 ~~a~~--~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~--~~t~~~~~~~~~~~~~~  158 (332)
                      .++++  ++|++|=+.+.+   |           -+.+++.+.|.+++++.+|+-.|||..  -.++   +-.++.+  +
T Consensus        99 ~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t--~  159 (254)
T cd00762          99 EDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT--E  159 (254)
T ss_pred             HHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc--C
Confidence            99999  999998876544   2           134588889999999999888899996  4443   2223332  2


Q ss_pred             CCceEEe
Q 020049          159 PKKLLGV  165 (332)
Q Consensus       159 ~~kviG~  165 (332)
                      .+.+++.
T Consensus       160 G~ai~At  166 (254)
T cd00762         160 GRAIFAS  166 (254)
T ss_pred             CCEEEEE
Confidence            2467777

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.63  E-value=0.025  Score=52.86  Aligned_cols=77  Identities=26%  Similarity=0.361  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|...   .+..+.++....  .++..+. .-+|   ..+.      +
T Consensus        12 ~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~~   87 (306)
T PRK07792         12 GKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVGL   87 (306)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999988  899999754   223333343321  2232221 1122   1121      2


Q ss_pred             CCCcEEEEcCCCCC
Q 020049           87 TGMDLVIIPAGVPR  100 (332)
Q Consensus        87 ~~aDiVi~~~g~~~  100 (332)
                      ...|++|+++|...
T Consensus        88 g~iD~li~nAG~~~  101 (306)
T PRK07792         88 GGLDIVVNNAGITR  101 (306)
T ss_pred             CCCCEEEECCCCCC
Confidence            46899999998754

>PRK07574 formate dehydrogenase; Provisional

Probab=96.63  E-value=0.016  Score=56.15  Aligned_cols=100  Identities=17%  Similarity=0.215  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||. |.||+.+|..|..-|.  +|+.+|+........  ...    .+..   ..++++.++.||+|++....
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~--~~~----g~~~---~~~l~ell~~aDvV~l~lPl  258 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE--QEL----GLTY---HVSFDSLVSVCDVVTIHCPL  258 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH--hhc----Ccee---cCCHHHHhhcCCEEEEcCCC
Confidence            4478999999 9999999999987676  999999865211111  011    1222   13578999999999998421


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      .           .++-.++.  .+.+....|++++||++  ..+|.-
T Consensus       259 t-----------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~  292 (385)
T PRK07574        259 H-----------PETEHLFD--ADVLSRMKRGSYLVNTARGKIVDRD  292 (385)
T ss_pred             C-----------HHHHHHhC--HHHHhcCCCCcEEEECCCCchhhHH
Confidence            1           11122221  23333345788998885  555544

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=96.62  E-value=0.017  Score=53.30  Aligned_cols=71  Identities=24%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC--CCCcEEE-EEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      +++++||+|||. |.+|..++..|...  +.  +|+ ++|.+..+  +.++.......  ..   .+++++.+.++|+|+
T Consensus         3 ~m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~g~~--~~---~~~~eell~~~D~Vv   72 (271)
T PRK13302          3 SRPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGLRRP--PP---VVPLDQLATHADIVV   72 (271)
T ss_pred             CCCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhcCCC--cc---cCCHHHHhcCCCEEE
Confidence            466789999999 99999999888764  33  654 78886522  22222111001  11   235677789999999


Q ss_pred             EcCC
Q 020049           94 IPAG   97 (332)
Q Consensus        94 ~~~g   97 (332)
                      +++.
T Consensus        73 i~tp   76 (271)
T PRK13302         73 EAAP   76 (271)
T ss_pred             ECCC
Confidence            9963

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.62  E-value=0.024  Score=52.40  Aligned_cols=121  Identities=17%  Similarity=0.199  Sum_probs=79.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEE----EeCCCCHH-------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG----FLGQPQLE-------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~----~~~~~d~~-------~a~   86 (332)
                      .+.|+|+|||..+|.++|..|+..|.  .++++-...  ++-...++.......++..    .+...+.+       .-+
T Consensus        12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f   89 (282)
T KOG1205|consen   12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF   89 (282)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence            34699999999999999999999998  788887765  3333355544432111221    11112222       346


Q ss_pred             CCCcEEEEcCCCCCCCCC-C---h---hhhH----hhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 020049           87 TGMDLVIIPAGVPRKPGM-T---R---DDLF----NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~-~---r---~~~~----~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                      .+.|+.|..||+.+ .+. +   .   ...+    ...+-..+...+.|++.. ++.|+++++..+.+.
T Consensus        90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~  156 (282)
T KOG1205|consen   90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP  156 (282)
T ss_pred             CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence            89999999999887 331 1   1   1122    245678888899998887 788888877776553

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.61  E-value=0.04  Score=49.44  Aligned_cols=101  Identities=22%  Similarity=0.295  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCC----cHH-----HHHHHhcCCCCCeEEEEeCCCCHHhhcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN----TPG-----VTADISHMDTGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~----~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (332)
                      .+.+||+|+|| |.+|..++..|...|. .++|+++|++.    .+.     ....+.+......   .  ..++.++++
T Consensus        23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l~   96 (226)
T cd05311          23 IEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEALK   96 (226)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHHh
Confidence            34579999999 9999999999988775 23799999983    111     1122322110011   1  125678899


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                      ++|++|.+.+    +|+-       +    .+..+.|   +++.+++..+||...
T Consensus        97 ~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~e  133 (226)
T cd05311          97 GADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVPE  133 (226)
T ss_pred             cCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCCc
Confidence            9999999854    2331       1    1333333   467777777899753

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.61  E-value=0.0095  Score=59.21  Aligned_cols=97  Identities=12%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC-CCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      +|+|||. |.||.++|..|+..|+  +|+++|+++.+  +.++... .....+.......++.+.++.+|+|+++...  
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~--   73 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKA--   73 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCC--
Confidence            4899999 9999999999999998  99999987622  2223322 1011122221112233345679999888421  


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                                   -+.+.++.+.+..+. ++.+||..+|
T Consensus        74 -------------~~~v~~Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        74 -------------GAPVDAVINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             -------------cHHHHHHHHHHHhhCCCCCEEEECCC
Confidence                         122333444555443 5667777776

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.60  E-value=0.046  Score=49.93  Aligned_cols=157  Identities=14%  Similarity=0.194  Sum_probs=81.3

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HH-------hhc
Q 020049           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LE-------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~-------~a~   86 (332)
                      .+.+.|+||++  .+|..++..|++.|.  .|++.|.+. ....+.++........... .+-+|   .+       +.+
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~~~~~~~~~~~~~~~~~~~~~-~Dl~~~~~v~~~~~~~~~~~   82 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLP-CDVAEDASIDAMFAELGKVW   82 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecchhHHHHHHHHHhccCCceEee-cCCCCHHHHHHHHHHHHhhc
Confidence            45799999953  699999999999998  899998764 2233344433211111110 01112   11       123


Q ss_pred             CCCcEEEEcCCCCCCC--------CCChh---hhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 TGMDLVIIPAGVPRKP--------GMTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~--------g~~r~---~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      ...|++|..+|.....        ..+..   ..+..|+.....+.+.+... .+++.|+++|.-....           
T Consensus        83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~-----------  151 (262)
T PRK07984         83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER-----------  151 (262)
T ss_pred             CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCC-----------
Confidence            3579999999864211        11222   22344554333333333222 2346677766432111           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       +.|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       152 -~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~i  187 (262)
T PRK07984        152 -AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  187 (262)
T ss_pred             -CCCCcchhHHHHHHHHHHHHHHHHHhc--ccCcEEeee
Confidence             122222345544444566777777764  455654444

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.11  Score=46.23  Aligned_cols=36  Identities=17%  Similarity=0.227  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++++++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            346899999999999999999999888  899999877

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.59  E-value=0.025  Score=53.86  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +|.++|.+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGvg-~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGVG-KVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCc
Confidence            358999999 99999999999998874 999999874

>PRK05599 hypothetical protein; Provisional

Probab=96.59  E-value=0.2  Score=45.06  Aligned_cols=153  Identities=13%  Similarity=0.155  Sum_probs=81.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---H-------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~   87 (332)
                      |.+.|+||++.+|..++..|++ |.  .|++.++++  ++..+.++..... ..+..+. +-+|   .       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            3589999999999999999884 65  899999876  3344445543221 1122111 1112   1       12235


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|+.+|......   .+.   .+....|    +...+.+.+.+.+...++.|+++|.-....            +.
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR------------AR  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc------------CC
Confidence            6899999988643211   111   1122223    233345556665544456777776544322            11


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~  191 (332)
                      |..-.++.+.-....+...++..++  +..|++.
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~  176 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI  176 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence            2222345544334456667777664  3445433

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.58  E-value=0.041  Score=48.95  Aligned_cols=114  Identities=18%  Similarity=0.136  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeC-CCC---HHhh-------c
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENA-------L   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~   86 (332)
                      ++|.|+|++|.+|+.++..|...|.  .|++.|++..   ......+...  ..++..+.. -+|   ..++       +
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSGNDCAKDWFEEYGFT--EDQVRLKELDVTDTEECAEALAEIEEEE   78 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhhcc--CCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999998887  8999998752   1111111111  122322211 122   1222       2


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP  139 (332)
                      ...|++|+.+|.....   ..+.   ...+..|+.....+    .+.+.+. +.+.+|++|..
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~iss~  140 (245)
T PRK12824         79 GPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQ-GYGRIINISSV  140 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCeEEEEECCh
Confidence            3589999998864211   1111   22344565554444    4444433 34567777643

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.58  E-value=0.032  Score=50.03  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+++.|+||+|.+|+.++..|+..|+  +++++|.+.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            35899999999999999999999888  999999864

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.57  E-value=0.011  Score=54.60  Aligned_cols=148  Identities=23%  Similarity=0.242  Sum_probs=90.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~   98 (332)
                      |||.|+|++|++|+.+...|. .+.  +++-.|..+     +|+.+..            ...+.++  .-|+||++|.+
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999998887 445  888887654     3333221            1234444  45999999987


Q ss_pred             CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCC--CchHHHHHHHHHHhCC-CCCCceEEeehhhHHH
Q 020049           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NSTVPIAAEVFKKAGT-YDPKKLLGVTMLDVVR  172 (332)
Q Consensus        99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~--~~~t~~~~~~~~~~~~-~~~~kviG~~~ld~~r  172 (332)
                      ..-.  ..++..-+.-|......+++...++  ++++|-+| --|  +.-..     -++..- -.|..++|-+.+-.+.
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~--ga~lVhiSTDyVFDG~~~~-----~Y~E~D~~~P~nvYG~sKl~GE~  133 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEV--GARLVHISTDYVFDGEKGG-----PYKETDTPNPLNVYGRSKLAGEE  133 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHh--CCeEEEeecceEecCCCCC-----CCCCCCCCCChhhhhHHHHHHHH
Confidence            5432  2345555678999999999999877  45555443 333  11100     011111 2345678877655443


Q ss_pred             HHHHHHHHhCCCCCCC---ceeEEEecCCCcee
Q 020049          173 ANTFVAEVLGLDPRDV---DVPVVGGHAGVTIL  202 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v---~~~v~G~hg~~~~v  202 (332)
                      +-    +..+  |..+   ..|++|++|. +.+
T Consensus       134 ~v----~~~~--~~~~I~Rtswv~g~~g~-nFv  159 (281)
T COG1091         134 AV----RAAG--PRHLILRTSWVYGEYGN-NFV  159 (281)
T ss_pred             HH----HHhC--CCEEEEEeeeeecCCCC-CHH
Confidence            22    2222  3333   5889999886 543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.56  E-value=0.034  Score=50.12  Aligned_cols=114  Identities=13%  Similarity=0.171  Sum_probs=63.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhh-------cCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi   91 (332)
                      .+++.|+||+|.+|..++..|++.|.  +|++.+.+.. ....++.+... ..+. ......+..++       +...|+
T Consensus         7 ~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          7 GKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36899999999999999999999987  8888765431 12222322211 1111 11111112222       236799


Q ss_pred             EEEcCCCCCCC---CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           92 VIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        92 Vi~~~g~~~~~---g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|.++|.....   ..+.   ...+..|+..    .+.+.+.+++. ..+.||++|.
T Consensus        83 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~-~~g~iv~isS  138 (255)
T PRK06463         83 LVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLS-KNGAIVNIAS  138 (255)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            99999874321   1222   2234455554    56666666533 3455666654

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.56  E-value=0.013  Score=53.99  Aligned_cols=96  Identities=11%  Similarity=0.109  Sum_probs=57.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC-CCeEEEEeCCCCHHhhc------CC-CcEEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENAL------TG-MDLVI   93 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~------~~-aDiVi   93 (332)
                      ||.|+||+|++|+.++..|++.|+  +|..+.++.....     .... ..... +.....+.+++      ++ +|.|+
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~-----~~~~~~~~~d-~~d~~~l~~a~~~~~~~~g~~d~v~   72 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSA-----GPNEKHVKFD-WLDEDTWDNPFSSDDGMEPEISAVY   72 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCcccc-----CCCCcccccc-CCCHHHHHHHHhcccCcCCceeEEE
Confidence            589999999999999999998887  8899988752110     0000 01111 11123455666      67 99999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +..+...  +         .....+.+++.+++.+-+ .+|..|
T Consensus        73 ~~~~~~~--~---------~~~~~~~~i~aa~~~gv~-~~V~~S  104 (285)
T TIGR03649        73 LVAPPIP--D---------LAPPMIKFIDFARSKGVR-RFVLLS  104 (285)
T ss_pred             EeCCCCC--C---------hhHHHHHHHHHHHHcCCC-EEEEee
Confidence            8754211  1         123345666666665533 344443

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.55  E-value=0.017  Score=53.94  Aligned_cols=69  Identities=16%  Similarity=0.153  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .....||+|+|+ |.+|..++..|...|.  +|..+|++. ....+.++   .  .....   ..++.+.++++|+||.+
T Consensus       149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~~~---~~~l~~~l~~aDiVI~t  217 (296)
T PRK08306        149 TIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSPFH---LSELAEEVGKIDIIFNT  217 (296)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Ceeec---HHHHHHHhCCCCEEEEC
Confidence            345679999999 9999999999988786  999999875 22222221   1  11111   23567888999999998


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      .
T Consensus       218 ~  218 (296)
T PRK08306        218 I  218 (296)
T ss_pred             C
Confidence            5

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.55  E-value=0.019  Score=60.37  Aligned_cols=92  Identities=17%  Similarity=0.291  Sum_probs=59.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .||+|||+ |.+|..++..+...|+..+|+.+|.++.. ..+.+   ...  ...   ..+++.++++++|+||++..  
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~---~g~--~~~---~~~~~~~~~~~aDvVilavp--   72 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS---LGV--IDR---GEEDLAEAVSGADVIVLAVP--   72 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH---CCC--CCc---ccCCHHHHhcCCCEEEECCC--
Confidence            58999999 99999999999988754479999998622 12221   111  001   13456788999999999853  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                                    ...+.++.+.+.++. ++.+|+.++
T Consensus        73 --------------~~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         73 --------------VLAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             --------------HHHHHHHHHHHHHhcCCCcEEEEcC
Confidence                          123455556666554 455554443

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.095  Score=47.11  Aligned_cols=114  Identities=11%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------ALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~~   87 (332)
                      +++.|+||+|.+|..++..|+..|.  .|++.|++.  ......++....  ..+..+. +-+|.   ++       .+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999888  899999876  223333343221  2222221 11221   11       124


Q ss_pred             CCcEEEEcCCCCCC-C--CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~-~--g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN  138 (332)
                      ..|++|.++|.... +  ..+.   ...+..|+.....+.+.+    .+..+.+.++++|.
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  138 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA  138 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            67999999875321 1  2222   233455655444444444    33333466777663

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.50  E-value=0.063  Score=47.70  Aligned_cols=35  Identities=20%  Similarity=0.115  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++++.|+||+|.+|..++..|+..|.  +|++.|.++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            35799999999999999999999888  899999876

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.49  E-value=0.024  Score=52.06  Aligned_cols=96  Identities=17%  Similarity=0.233  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||++||+ |+||..++..|...+ + ..+|+..|.++.+..  ++.... ....     +++..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence            469999999 999999999998887 2 368888888762221  232221 1111     235568889999999995 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                         ||            ..+.+++..++...++..||-+.-.+
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv   98 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGV   98 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCC
Confidence               22            34556667776644566665554444

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.46  E-value=0.19  Score=44.45  Aligned_cols=108  Identities=18%  Similarity=0.157  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC----HHhhcCCCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~a~~~aDiVi~   94 (332)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++....    .     ...+..+.. -++    ..+.+...|+||.
T Consensus         5 ~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~-----~~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          5 TKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----L-----SGNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----c-----CCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            35899999999999999999999888  899999865210    0     011222111 111    1223567899999


Q ss_pred             cCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           95 PAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        95 ~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      .+|....  +  ..+.   ...+..|+.....+.+.+...   .+.+.+++++.
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  127 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCS  127 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence            9986421  1  1122   223455665555555544432   23355665553

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.11  Score=48.24  Aligned_cols=114  Identities=22%  Similarity=0.242  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE-eCCCCHH---h-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE---N-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~---~-------a~   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.++++  +.....++...   ..+..+ .+-+|.+   +       .+
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVERF   83 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  899999876  22233333221   122211 1122321   1       23


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN  138 (332)
                      ...|+||.++|.....   ..+.   ...+..|+.....+++.+..+.  ..+.||++|.
T Consensus        84 g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS  143 (296)
T PRK05872         84 GGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS  143 (296)
T ss_pred             CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            5679999999864311   1121   2334556555555555443321  2455666653

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.45  E-value=0.024  Score=50.60  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..++.|+|++|.+|..++..|+..|.  +|+++|.++
T Consensus         5 ~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          5 DKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999998887  899999876

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.026  Score=49.96  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999999887  899999875

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.44  E-value=0.038  Score=49.95  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+.+.|+||+  +.+|..++..|+..|.  +|++.++++
T Consensus         7 ~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          7 GKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            3579999997  5899999999999998  899998864

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=96.44  E-value=0.035  Score=49.36  Aligned_cols=114  Identities=14%  Similarity=0.164  Sum_probs=63.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG   88 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~~   88 (332)
                      |.|+||+|.+|..++..|++.|.  ++++++...   ......++.+..  .++..+. +-+|.   +++       +..
T Consensus         1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA   76 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57999999999999999999988  888887643   222233343322  2232221 11221   122       234


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV  140 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~  140 (332)
                      .|.+|..+|......   .+   ....+..|+.....+.+.+    .+..+.+.+|++|...
T Consensus        77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~  138 (239)
T TIGR01831        77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS  138 (239)
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence            689999988643221   12   2334556665555554432    2223456666666544

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.43  E-value=0.024  Score=53.39  Aligned_cols=65  Identities=20%  Similarity=0.201  Sum_probs=43.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||+|||+ |++|.+++..|...|+  +++..+....... ..+....    +..   . +..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence            468999999 9999999999998887  6666554331111 1121111    121   2 3568889999999995

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.43  E-value=0.0096  Score=48.20  Aligned_cols=71  Identities=24%  Similarity=0.309  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHH-HHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      |||+|+|++|.||+.++..+...+-..=+..+|.+.  ..|. ..++.... ...+..   +.|+++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Cccccc---chhHHHhcccCCEEEEc
Confidence            689999999999999999998854322355667665  1111 11222221 122232   35788999999998876

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.42  E-value=0.018  Score=54.78  Aligned_cols=64  Identities=28%  Similarity=0.395  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|+.+|..|+. ++.-+|+.+|....... .   .     .+..   ..++++++++||+|+++.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~-~---~-----~~~~---~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA-A---T-----YVDY---KDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH-H---h-----hccc---cCCHHHHHHhCCEEEEeC
Confidence            3579999999 9999999998853 33348999997652211 1   0     0111   236789999999999985

>PLN03139 formate dehydrogenase; Provisional

Probab=96.42  E-value=0.023  Score=55.07  Aligned_cols=100  Identities=22%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||. |.||+.+|..|..-|.  +|+.+|.........  .+.    .+..   ..++++.++.||+|++..  
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l--  263 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT--  263 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC--
Confidence            3469999999 9999999999986666  899999864211111  111    1121   236789999999999984  


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      |..         ..+...+.  .+.+....|++++||.+  ..+|.-
T Consensus       264 Plt---------~~T~~li~--~~~l~~mk~ga~lIN~aRG~iVDe~  299 (386)
T PLN03139        264 PLT---------EKTRGMFN--KERIAKMKKGVLIVNNARGAIMDTQ  299 (386)
T ss_pred             CCC---------HHHHHHhC--HHHHhhCCCCeEEEECCCCchhhHH
Confidence            211         11222221  23444445788998885  445443

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.42  E-value=0.036  Score=50.01  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      .+.+.|+||+|.+|+.++..|++.|.  +|++.|.+..   .....++.+..  ..+..+. .-+|   ..+++      
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   83 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE   83 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999988  9999998652   22333444322  1222111 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN  138 (332)
                       ..-|++|.++|......   .+.   ...+..|+....    .+.+.+.+. ..+.+|++|.
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS  145 (254)
T PRK06114         84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLEN-GGGSIVNIAS  145 (254)
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhc-CCcEEEEECc
Confidence             34599999998643211   111   223445555443    444444332 3455666654

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.41  E-value=0.22  Score=45.64  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCH----------Hhhc
Q 020049           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~   86 (332)
                      .+.+.|+||++  .+|..+|..|+..|.  .|++.|+++. .....++.+... ..+-...+-+|.          .+.+
T Consensus         7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~~~   83 (271)
T PRK06505          7 GKRGLIMGVANDHSIAWGIAKQLAAQGA--ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEKKW   83 (271)
T ss_pred             CCEEEEeCCCCCCcHHHHHHHHHHhCCC--EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            35699999964  799999999999998  8999987652 112223322111 111110011221          1224


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCChh---hhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPRK-----P--GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-----~--g~~r~---~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                      ...|++|..+|....     +  ..+..   ..+..|+...    +.+.+.+.   ..+.||++|......         
T Consensus        84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~---~~G~Iv~isS~~~~~---------  151 (271)
T PRK06505         84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMP---DGGSMLTLTYGGSTR---------  151 (271)
T ss_pred             CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhc---cCceEEEEcCCCccc---------
Confidence            568999999986432     1  12222   2234454443    34444443   246666665433211         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                         +.|..-.++.+.-....+.+.+|..++  +..|++..
T Consensus       152 ---~~~~~~~Y~asKaAl~~l~r~la~el~--~~gIrVn~  186 (271)
T PRK06505        152 ---VMPNYNVMGVAKAALEASVRYLAADYG--PQGIRVNA  186 (271)
T ss_pred             ---cCCccchhhhhHHHHHHHHHHHHHHHh--hcCeEEEE
Confidence               122223455544444556777777764  44554433

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.41  E-value=0.03  Score=50.24  Aligned_cols=34  Identities=32%  Similarity=0.440  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +++++|.+.
T Consensus        22 ~~VlivG~-GglGs~va~~La~~Gvg-~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGA-GGLGSPAAEYLAAAGVG-KLGLVDDDV   55 (228)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCE
Confidence            58999999 99999999999998864 899999765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.19  Score=45.92  Aligned_cols=113  Identities=12%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~~   87 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|++++.+.  ......++....  ..+..+. +-++.+   ++       +.
T Consensus        11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (274)
T PRK07775         11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRVEKCEELVDKIRADG--GEAVAFPLDVTDPDSVKSFVAQAEEALG   86 (274)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  888988765  222222232211  1222211 122322   11       24


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN  138 (332)
                      ..|.||.++|......   .+.   ...+..|+.....+.+.+    .+.. .+.|++++.
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~-~g~iv~isS  146 (274)
T PRK07775         87 EIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR-RGDLIFVGS  146 (274)
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CceEEEECC
Confidence            6799999998643211   111   223455665555554443    3222 344555544

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.40  E-value=0.028  Score=49.90  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++|.|+||+|.+|+.++..|++.|.  +|+++++++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999888  999999876

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.40  E-value=0.026  Score=53.62  Aligned_cols=72  Identities=15%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|+|+ |..|...+..+.....+.+|.+++++.  .+..+.++.+.. ...+..   ..|+++++++||+|+.+.
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEee
Confidence            368999999 999998877776533356999999876  333444444321 123332   347789999999998874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.39  E-value=0.028  Score=50.87  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +++++|.+.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gvg-~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGVG-NLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCCC-EEEEEeCCc
Confidence            358999999 99999999999998864 899999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.39  E-value=0.027  Score=48.52  Aligned_cols=92  Identities=28%  Similarity=0.352  Sum_probs=58.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC-
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g-   97 (332)
                      ..++|+|+|. |.+|+.+|..+..-|.  +|+.+|.......  ...+.    ....    .++++.++.||+|+++.. 
T Consensus        35 ~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDiv~~~~pl  101 (178)
T PF02826_consen   35 RGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADIVSLHLPL  101 (178)
T ss_dssp             TTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SEEEE-SSS
T ss_pred             CCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhhhhhhhcc
Confidence            4579999999 9999999999997777  9999999763222  11111    1121    267899999999999853 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .+...+.-       |.       +.+....|++++||++
T Consensus       102 t~~T~~li-------~~-------~~l~~mk~ga~lvN~a  127 (178)
T PF02826_consen  102 TPETRGLI-------NA-------EFLAKMKPGAVLVNVA  127 (178)
T ss_dssp             STTTTTSB-------SH-------HHHHTSTTTEEEEESS
T ss_pred             ccccceee-------ee-------eeeeccccceEEEecc
Confidence            23222221       11       1223334688888886

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.38  E-value=0.044  Score=51.22  Aligned_cols=105  Identities=19%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cH--HHHHHHhcCCCCCeEEEEeC-CCC---HHhhc--CC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL--TG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~--~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--~~   88 (332)
                      +++|.|+||+|++|++.+..|+..|+  +++.+|...   ..  ..+..+.+.  ...+..... -.|   ++..|  ..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~   77 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVK   77 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcC
Confidence            46899999999999999999999999  999999765   11  122223332  123332211 123   22222  34


Q ss_pred             CcEEEEcCCCCC-CCC-CChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           89 MDLVIIPAGVPR-KPG-MTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        89 aDiVi~~~g~~~-~~g-~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      -|-|++.|+... ++. +.+..+...|+-....+.+.+.++.
T Consensus        78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            677888876532 111 2345666789999999999999887

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.36  E-value=0.25  Score=44.83  Aligned_cols=159  Identities=13%  Similarity=0.137  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEE-EEeCCCCH-------Hhhc
Q 020049           19 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVR-GFLGQPQL-------ENAL   86 (332)
Q Consensus        19 ~~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~-~~~~~~d~-------~~a~   86 (332)
                      +.+.+.|+||++  .+|..++..|+..|.  +|++.+.++ ....+.++... .....+. ..+...+.       .+.+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~--~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGA--ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW   84 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCC--EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence            345789999965  599999999999888  888988764 22223334322 1101111 01111111       1234


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|..+|....     +  ..+.   ...+.-|+.....+.+.+..+- .++.||+++......            
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~------------  152 (260)
T PRK06603         85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEK------------  152 (260)
T ss_pred             CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcccc------------
Confidence            568999999886421     1  1122   2233445544444444333222 346777776533221            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+.-....|.+.+|..++  +..|++..+
T Consensus       153 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  188 (260)
T PRK06603        153 VIPNYNVMGVAKAALEASVKYLANDMG--ENNIRVNAI  188 (260)
T ss_pred             CCCcccchhhHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            122223455554444556777777765  445544433

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.36  E-value=0.095  Score=46.75  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=61.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      +.+.|+||+|.+|..++..|+..|.  ++++.. .+..  .....++....  ..+..+. .-+|.   .++       +
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999987  777754 3321  12223333222  1222111 11221   222       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|+||+++|......   .+   ....+..|......    +.+.+.+. +.+.|+++|.
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS  140 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISS  140 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEec
Confidence            46899999998753211   11   22334556555444    44444332 3345666654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.35  E-value=0.046  Score=49.68  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. ++.++|.+.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gvg-~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGVG-TLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCCC-EEEEEcCCE
Confidence            469999999 99999999999998864 999999875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.34  E-value=0.21  Score=45.87  Aligned_cols=115  Identities=17%  Similarity=0.079  Sum_probs=62.4

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHH----------hhcC
Q 020049           21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE----------NALT   87 (332)
Q Consensus        21 ~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~----------~a~~   87 (332)
                      +.+.|+||+  +.+|..+|..|+..|.  .|++.|+++ ......++.+....... ....-+|.+          +.+.
T Consensus         6 k~~lItGas~~~GIG~aiA~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~-~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          6 KKGLIVGVANNKSIAYGIAKACFEQGA--ELAFTYLNEALKKRVEPIAQELGSDYV-YELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             cEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCceE-EEecCCCHHHHHHHHHHHHHHcC
Confidence            579999995  5799999999999998  899999875 12222223211111111 111112321          1235


Q ss_pred             CCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      ..|++|..+|....     +  ..+.   ...+.-|+.....+.+.+..+- .++.|+++|.
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS  144 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY  144 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence            67999999986421     1  1222   2234556544444444333322 2456666653

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.34  E-value=0.033  Score=51.21  Aligned_cols=68  Identities=18%  Similarity=0.319  Sum_probs=44.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +|||+|||. |.+|..++..+...+...+ +.++|.+...  +.++.+.. .  ...+   +++++.+.++|+|++++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a   69 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT-G--AKAC---LSIDELVEDVDLVVECA   69 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcC
Confidence            379999998 9999999988877542124 5678887522  22222211 1  1222   36667779999999996

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.059  Score=47.51  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHh---hcC--CCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLEN---ALT--GMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~---a~~--~aDiVi~   94 (332)
                      +++.|+||+|.+|+.++..|+..|.  +|+++|.+...  ..++..... ..+.. .+...++++   .+.  ..|+||+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~--~~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~   76 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAA--LAALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY   76 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence            4799999999999999999998887  89999987521  112222111 11111 111112222   123  3799999


Q ss_pred             cCCCCCCC-----CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCC
Q 020049           95 PAGVPRKP-----GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  139 (332)
Q Consensus        95 ~~g~~~~~-----g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP  139 (332)
                      ++|.....     ..+.   ...+..|+.....+.+.+.++.  ..+.+++++..
T Consensus        77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~  131 (222)
T PRK06953         77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR  131 (222)
T ss_pred             CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence            98865211     1122   2345667776666666665432  23455555443

>PLN02928 oxidoreductase family protein

Probab=96.32  E-value=0.019  Score=54.97  Aligned_cols=103  Identities=23%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHH--hcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl--~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|+|. |.+|+.+|..+..-|.  +|+.+|..........+  ................++++.++.||+|++..
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            3469999999 9999999999986666  99999986311111111  00000000000001236889999999999985


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .  ..+.         +-.++.  .+.+...-|++++||++
T Consensus       235 P--lt~~---------T~~li~--~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        235 T--LTKE---------TAGIVN--DEFLSSMKKGALLVNIA  262 (347)
T ss_pred             C--CChH---------hhcccC--HHHHhcCCCCeEEEECC
Confidence            2  1111         111111  23344445789999986

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.31  E-value=0.022  Score=55.12  Aligned_cols=76  Identities=13%  Similarity=0.171  Sum_probs=45.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-CCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+++||+|+||+|++|..+...|...+. .+|.++..++..|....-.+.. .......+. ..+ .+.++++|+|+++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            3567999999999999999998888753 3888887654222211111110 001111111 112 24479999999985

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.29  E-value=0.027  Score=53.38  Aligned_cols=71  Identities=15%  Similarity=0.155  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+++|||+ |.+|...+..+.......+|.++|++.  .+..+.++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence            368999999 999998777665544567999999987  23334444432  223343   236789999999999863

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.29  E-value=0.0033  Score=60.87  Aligned_cols=71  Identities=25%  Similarity=0.360  Sum_probs=44.2

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEE--Ee--CCCCHHhhcCCCcEEEEcC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRG--FL--GQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~--~~--~~~d~~~a~~~aDiVi~~~   96 (332)
                      |.|+|+ |.+|+.++..|++.+...+|++.|++..+  ..+..+  .  ..++..  ..  +..++.+.++++|+||.++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~--~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--L--GDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----T--TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--c--ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            789999 99999999999988765599999998622  222222  1  122222  11  1123567889999999998


Q ss_pred             CC
Q 020049           97 GV   98 (332)
Q Consensus        97 g~   98 (332)
                      |.
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            64

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.28  E-value=0.027  Score=56.32  Aligned_cols=99  Identities=15%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC---CCCCeEEEEeCCCCHHhhcCC---CcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---DTGAVVRGFLGQPQLENALTG---MDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~---~~~~~v~~~~~~~d~~~a~~~---aDiV   92 (332)
                      ..++|++||- |.||+++|..|+..|+  +|+.+|+...+  +.++.+.   .....+..   ..+++++.+.   +|+|
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga~~~~~---a~s~~e~v~~l~~~dvI   76 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGNLPLYG---FKDPEDFVLSIQKPRSV   76 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCCccccc---CCCHHHHHhcCCCCCEE
Confidence            3468999999 9999999999999998  99999987522  2222221   00011111   2345555554   9999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                      |++...               -+.+.++...+.... |+.++|..||-.
T Consensus        77 i~~v~~---------------~~aV~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         77 IILVKA---------------GAPVDQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             EEECCC---------------cHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence            998421               122333333344443 666777776543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.28  E-value=0.05  Score=47.79  Aligned_cols=34  Identities=26%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +|.++|.+.
T Consensus        20 s~VlviG~-gglGsevak~L~~~GVg-~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGA-GALGAEIAKNLVLAGID-SITIVDHRL   53 (198)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEECCc
Confidence            58999999 88999999999999874 899999764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.25  E-value=0.074  Score=54.94  Aligned_cols=114  Identities=17%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++++++  ......++....  ..+..+. .-+|   .+++++      
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~  446 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAEH  446 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            46799999999999999999999988  899999876  222333343221  1222211 1122   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---C-----ChhhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 020049           88 -GMDLVIIPAGVPRKPG---M-----TRDDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~-----~r~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN  138 (332)
                       ..|++|.++|......   .     +....+..|+.....+    .+.+.+. ..+.||++|.
T Consensus       447 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        447 GHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence             6899999998642211   1     1122344565544444    4444433 3456666653

>PLN02712 arogenate dehydrogenase

Probab=96.24  E-value=0.03  Score=58.16  Aligned_cols=65  Identities=18%  Similarity=0.248  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-CCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVi~~~   96 (332)
                      +++||+|||. |.||..++..|...|.  +|+.+|.+.....+.+   ..    +..   .+++++.+. ++|+||++.
T Consensus       368 ~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~---~G----v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        368 SKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQK---LG----VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHH---cC----CeE---eCCHHHHHhcCCCEEEECC
Confidence            5689999998 9999999999988876  8999998752111221   11    122   235556565 599999994

>PRK06484 short chain dehydrogenase; Validated

Probab=96.24  E-value=0.034  Score=55.77  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEE-EeCCCCHHhh-------cCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-------~~~a   89 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  +.....+...  ...+.. ++...+..+.       +...
T Consensus       269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            36899999999999999999999998  8999998762  2222222111  011111 1111112222       2457


Q ss_pred             cEEEEcCCCCC--CC--CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           90 DLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        90 DiVi~~~g~~~--~~--g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      |++|..+|...  .+  ..+   ....+..|+.....+.+.+..+- ..+.||++|......            +.|..-
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~~  412 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL------------ALPPRN  412 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC------------CCCCCc
Confidence            99999998742  11  122   23345567666655555554443 346777776543322            223333


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .++.+......+.+.++..++  +..|++..+
T Consensus       413 ~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  442 (520)
T PRK06484        413 AYCASKAAVTMLSRSLACEWA--PAGIRVNTV  442 (520)
T ss_pred             hhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            455544334456667776654  344544433

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.23  E-value=0.14  Score=45.29  Aligned_cols=113  Identities=17%  Similarity=0.192  Sum_probs=61.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CCc--HHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      .+.|+||+|.+|+.++..|+..|.  +++++.. ++.  .....++....  ..+..+. .-+|.          .+.+.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (242)
T TIGR01829         2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCGPNEERAEAWLQEQGALG--FDFRVVEGDVSSFESCKAAVAKVEAELG   77 (242)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhhC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            588999999999999999999888  8888776 331  11122222111  1222111 11221          12234


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP  139 (332)
                      ..|.||.++|.....   ..+   ....+..|......    +.+.+++. +.+.|++++..
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~iss~  138 (242)
T TIGR01829        78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRER-GWGRIINISSV  138 (242)
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            689999999864321   111   22334556665444    44444433 34566666543

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.22  E-value=0.049  Score=51.06  Aligned_cols=66  Identities=14%  Similarity=0.169  Sum_probs=46.2

Q ss_pred             CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe
Q 020049           21 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL   77 (332)
Q Consensus        21 ~kI~IiGa~G~--------------------vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~   77 (332)
                      |||.|-|| |+                    -|+.+|..|+..|+  +|+++|++..   ......+.+...    ..  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence            68888888 74                    36788888888888  9999998752   222334444321    11  


Q ss_pred             CCCCHHhhcCCCcEEEEcC
Q 020049           78 GQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        78 ~~~d~~~a~~~aDiVi~~~   96 (332)
                       ..+..++.++||+||++.
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             224579999999999984

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.21  E-value=0.056  Score=55.39  Aligned_cols=111  Identities=16%  Similarity=0.057  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCC--c--HHHH-HHHhcC-----------C-----CCCeEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN--T--PGVT-ADISHM-----------D-----TGAVVR   74 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~--~--~~~~-~dl~~~-----------~-----~~~~v~   74 (332)
                      +.+.++|.|+||+||+|..++..|+... -..+|+++.+..  .  .... .++.+.           .     ...++.
T Consensus       116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~  195 (605)
T PLN02503        116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV  195 (605)
T ss_pred             hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence            3456789999999999999999888754 345788887643  1  1111 111110           0     012333


Q ss_pred             EEeCC-C---------CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           75 GFLGQ-P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        75 ~~~~~-~---------d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      .+.+. +         +++...++.|+||++|+... ...........|+....++.+.+.+..
T Consensus       196 ~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        196 PVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             EEEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            22211 1         22333467999999987543 233445567889999999999887653

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.21  E-value=0.3  Score=44.68  Aligned_cols=68  Identities=25%  Similarity=0.237  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||+|+|++|.||+.++..+...+-..-+.++|.+......  .  .  ...+..   .+|+++.++++|+||...
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~--~--~~~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--Q--G--ALGVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--c--C--CCCccc---cCCHHHhccCCCEEEECC
Confidence            479999998899999999887765433234458876521111  1  1  112221   357888888999999663

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.21  Score=44.98  Aligned_cols=115  Identities=18%  Similarity=0.166  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH------hhcCCCc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE------NALTGMD   90 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~------~a~~~aD   90 (332)
                      .+++.|+|++|.+|..++..|+..|.  +|+++|+++  ......++.... ..++..+. .-+|.+      +.+...|
T Consensus         7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            35899999999999999999999888  899999876  222233343221 11222111 112221      2346799


Q ss_pred             EEEEcCCCCCC-C--CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           91 LVIIPAGVPRK-P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        91 iVi~~~g~~~~-~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ++|.++|.... +  ..+.   ...+..|+..    .+.+.+.+.+. ..+.|+++|.
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~iss  140 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKAR-GSGVIVNVIG  140 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEecC
Confidence            99999886421 1  1122   2223445543    44444444433 2355666553

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.19  E-value=0.084  Score=44.66  Aligned_cols=66  Identities=14%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.++|+|||- |+.|...|..|...|+  +|+.-..........--.+. +    +    ..+.+||.+.||+|+++.
T Consensus         3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~G-f----~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADG-F----E----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCC-C----e----eccHHHHHhhCCEEEEeC
Confidence            3469999999 9999999999999998  77766665432222212222 1    1    124689999999999983

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08223 hypothetical protein; Validated

Probab=96.19  E-value=0.028  Score=52.12  Aligned_cols=73  Identities=19%  Similarity=0.300  Sum_probs=48.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c----H--------------H--HHHHHhcCCCCCeEEEEe--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T----P--------------G--VTADISHMDTGAVVRGFL--   77 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~----~--------------~--~~~dl~~~~~~~~v~~~~--   77 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +|.|+|-+. .    .              .  .+..+.+.+...++..+.  
T Consensus        28 s~VlIvG~-GGLGs~va~~LA~aGVG-~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~  105 (287)
T PRK08223         28 SRVAIAGL-GGVGGIHLLTLARLGIG-KFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG  105 (287)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCCC-eEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            48999999 99999999999999875 899999875 1    0              0  111232222233444321  


Q ss_pred             -CCCCHHhhcCCCcEEEEc
Q 020049           78 -GQPQLENALTGMDLVIIP   95 (332)
Q Consensus        78 -~~~d~~~a~~~aDiVi~~   95 (332)
                       ...+..+.++++|+||-+
T Consensus       106 l~~~n~~~ll~~~DlVvD~  124 (287)
T PRK08223        106 IGKENADAFLDGVDVYVDG  124 (287)
T ss_pred             cCccCHHHHHhCCCEEEEC
Confidence             123455778999999855

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.17  E-value=0.022  Score=52.88  Aligned_cols=60  Identities=18%  Similarity=0.307  Sum_probs=43.9

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        25 IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||. |.+|..++..|+..|+  +|.++|+++..  ..++....    ...   +.+..++++++|+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            5798 9999999999999888  89999987622  22233221    111   235678899999999985

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.098  Score=45.24  Aligned_cols=101  Identities=19%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHh---hcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLEN---ALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~---a~~~aDiVi~~~g   97 (332)
                      |++.|+||+|.+|..++..|++. .  +|++++++.. ....|+.+.            .+.++   .+...|++|..+|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence            47999999999999999999887 4  8999987541 000111111            11112   2346899999998


Q ss_pred             CCCCC---CCChhh---hHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049           98 VPRKP---GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus        98 ~~~~~---g~~r~~---~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                      .....   +.+..+   .+..|+.....+.+...++- +.+.++++|
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  111 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS  111 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence            64211   122222   23445554445555444332 345555554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.14  E-value=0.072  Score=53.43  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-----------CCC
Q 020049           13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-----------GQP   80 (332)
Q Consensus        13 ~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-----------~~~   80 (332)
                      +.-+..++.||+|+|+ |.+|...+..+...|.  +|+.+|.++ ....+..+.-..  ..+....           .+.
T Consensus       158 taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~--v~i~~~e~~~~~~gya~~~s~  232 (509)
T PRK09424        158 TAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEF--LELDFEEEGGSGDGYAKVMSE  232 (509)
T ss_pred             eccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeE--EEeccccccccccchhhhcch
Confidence            3445566789999999 9999999988888886  799999987 333444332110  0010000           011


Q ss_pred             CH--------HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           81 QL--------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        81 d~--------~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      ++        .+.++++|+||.+++.|.++.-         .-+.++..+.+   .|.+.|+.++.+
T Consensus       233 ~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~m---kpGgvIVdvg~~  287 (509)
T PRK09424        233 EFIKAEMALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASM---KPGSVIVDLAAE  287 (509)
T ss_pred             hHHHHHHHHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhc---CCCCEEEEEccC
Confidence            21        1224789999999998743221         11124444444   378888777764

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.13  E-value=0.071  Score=50.09  Aligned_cols=124  Identities=19%  Similarity=0.323  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhC----C-CCcEEEEEccCC-cHH---HHHHHh---cCC--------CCCeEEE
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKIN----P-LVSVLHLYDVVN-TPG---VTADIS---HMD--------TGAVVRG   75 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~----~-~~~ei~L~D~~~-~~~---~~~dl~---~~~--------~~~~v~~   75 (332)
                      +-..+.||+|||+ |+=|+++|..+...    + ...+|...=..+ ..+   ...|.-   |..        .+..+..
T Consensus        17 ~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvA   95 (372)
T KOG2711|consen   17 AERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVA   95 (372)
T ss_pred             hhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEe
Confidence            3344679999999 99999999877543    1 122333332222 222   222221   111        1233333


Q ss_pred             EeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC------CCCchHHHHH
Q 020049           76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN------PVNSTVPIAA  148 (332)
Q Consensus        76 ~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN------P~~~~t~~~~  148 (332)
                         .+|+.++++|||++|+..  |              -+.+.+++++|..+- |++..|-.+-      |-..+ .+++
T Consensus        96 ---v~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i-~liS  155 (372)
T KOG2711|consen   96 ---VPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGI-RLIS  155 (372)
T ss_pred             ---cchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCce-eehH
Confidence               579999999999999984  3              345667888888776 5665555422      22101 1224


Q ss_pred             HHHHHhCCCCCC
Q 020049          149 EVFKKAGTYDPK  160 (332)
Q Consensus       149 ~~~~~~~~~~~~  160 (332)
                      +...+..|+|..
T Consensus       156 ~iI~~~lgI~~~  167 (372)
T KOG2711|consen  156 QIIHRALGIPCS  167 (372)
T ss_pred             HHHHHHhCCCce
Confidence            555666677665

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.13  E-value=0.038  Score=53.93  Aligned_cols=90  Identities=19%  Similarity=0.144  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ...+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+ ..+..+   .  .  ...    +.+++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~---G--~--~~~----~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAME---G--Y--EVM----TMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhc---C--C--EEc----cHHHHHcCCCEEEECCC
Confidence            3468999999 9999999999988887  78999998732 222221   1  1  111    23578899999999864


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      .+               ..+..  ..++...+.+++++++.+
T Consensus       267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            32               12211  113333478889898864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.12  E-value=0.69  Score=41.95  Aligned_cols=78  Identities=15%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             CCCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HH-------hh
Q 020049           19 AGFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LE-------NA   85 (332)
Q Consensus        19 ~~~kI~IiGa--~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~-------~a   85 (332)
                      +.+.+.|+||  ++.+|..+|..|+..|.  +|++.++++ ....+.++....... +....+-+|   .+       +.
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Dv~~~~~v~~~~~~~~~~   81 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGA--ELAFTYVVDKLEERVRKMAAELDSE-LVFRCDVASDDEINQVFADLGKH   81 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHhccCCc-eEEECCCCCHHHHHHHHHHHHHH
Confidence            3457999996  46899999999999998  888887654 222233333221111 111111122   11       22


Q ss_pred             cCCCcEEEEcCCCC
Q 020049           86 LTGMDLVIIPAGVP   99 (332)
Q Consensus        86 ~~~aDiVi~~~g~~   99 (332)
                      +...|++|..+|..
T Consensus        82 ~g~iD~lVnnAG~~   95 (261)
T PRK08690         82 WDGLDGLVHSIGFA   95 (261)
T ss_pred             hCCCcEEEECCccC
Confidence            35689999999874

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.11  E-value=0.17  Score=46.80  Aligned_cols=116  Identities=16%  Similarity=0.323  Sum_probs=74.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC----------HH
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LE   83 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~   83 (332)
                      +.....|.|+||++.+|..+|..+++.+.  .+++.|+|.  ....+..+.+..   .+..+. +-++          .+
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk  109 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVK  109 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHH
Confidence            34456899999988999999999999887  899999998  344444454431   111111 1112          33


Q ss_pred             hhcCCCcEEEEcCCCC-CCCCC--Chhhh---Hhh----hHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           84 NALTGMDLVIIPAGVP-RKPGM--TRDDL---FNI----NAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~-~~~g~--~r~~~---~~~----n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +...+.|++|..||+. .++-.  ++.+.   +.-    -...++.+.+.|.+.+ ++.|+.++.
T Consensus       110 ~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS  173 (300)
T KOG1201|consen  110 KEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIAS  173 (300)
T ss_pred             HhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehh
Confidence            5568999999999964 33332  22221   122    3567788889988664 666665543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.11  E-value=0.037  Score=52.43  Aligned_cols=72  Identities=10%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+++|||+ |.+|...+..++......+|.++|+++.  ...+.++.+. ....+..+   .++++++.+||+|+.+-
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~~---~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYVV---NSADEAIEEADIIVTVT  200 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEEe---CCHHHHHhcCCEEEEcc
Confidence            358999999 9999887776654434579999999862  3334444332 12233332   46788999999999874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.11  E-value=0.11  Score=45.64  Aligned_cols=69  Identities=14%  Similarity=0.098  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||.|||+ |.+|...+..|...|.  +|++++...... ..++.+..   .+......-+ ++.+.++|+||.+.
T Consensus        10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT   78 (202)
T PRK06718         10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAAT   78 (202)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcC
Confidence            468999999 9999999999998886  899998643222 22333321   1222111112 46689999988874

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.10  E-value=0.025  Score=55.74  Aligned_cols=71  Identities=23%  Similarity=0.201  Sum_probs=45.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhh-cCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-LTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a-~~~aDiVi~~~   96 (332)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++..  ...+.......-+.. ......++++ ++++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~--~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEER--LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            68999999 9999999999988887  89999987622  222222110011111 0011224444 78999999984

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.08  E-value=0.026  Score=53.17  Aligned_cols=69  Identities=16%  Similarity=0.234  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+++|||+ |..+...+..+...-.+.+|.++|++.  .+..+.++.+ . ...+...   .+.++++++||+|+.+
T Consensus       129 ~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  129 RTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTA  199 (313)
T ss_dssp             -EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE-
T ss_pred             ceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEc
Confidence            58999999 999988877666533378999999987  4555667776 2 4455543   3678999999999986

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.06  E-value=0.04  Score=52.71  Aligned_cols=73  Identities=25%  Similarity=0.276  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEccCCcHHHHH-H-HhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-D-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~-d-l~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|+||+|.+|..++..|...+.. +++ +++.++..+... + ..+......+.. . ..+.++.++++|+|+++.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~al   76 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLAL   76 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECC
Confidence            58999999999999999998876543 666 667654222211 1 111111011121 1 124445446999999985

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK06484 short chain dehydrogenase; Validated

Probab=96.05  E-value=0.05  Score=54.60  Aligned_cols=34  Identities=26%  Similarity=0.211  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.+.|+||++.+|..++..|+..|.  +|+++|++.
T Consensus         6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~   39 (520)
T PRK06484          6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNV   39 (520)
T ss_pred             eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999988  899999875

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.2  Score=46.83  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .+.+.|+||++.+|..++..|+..|.  .|++++++
T Consensus         8 ~k~~lITGgs~GIG~aia~~la~~G~--~Vv~~~r~   41 (305)
T PRK08303          8 GKVALVAGATRGAGRGIAVELGAAGA--TVYVTGRS   41 (305)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecc
Confidence            45799999999999999999999887  89999886

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.05  E-value=0.035  Score=57.06  Aligned_cols=137  Identities=15%  Similarity=0.181  Sum_probs=80.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi~~   95 (332)
                      +.+|.|+|. |.+|+.++..|...++  +++.+|.|+.+  +..+.+.. .+-+.+  +.++.    +..+++||.||.+
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence            368999999 9999999999998888  89999998622  22233322 122222  12232    1235789999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      .+               |-+.-..++..+++++|+..|+.- .||.+.-      .+++. |-  +.++-=+...+.++-
T Consensus       472 ~~---------------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~-Ga--~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CN---------------EPEDTMKIVELCQQHFPHLHILARARGRVEAH------ELLQA-GV--TQFSRETFSSALELG  527 (601)
T ss_pred             eC---------------CHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhC-CC--CEEEccHHHHHHHHH
Confidence            42               222333466667888899766554 4665432      23343 32  344433333334444


Q ss_pred             HHHHHHhCCCCCCC
Q 020049          175 TFVAEVLGLDPRDV  188 (332)
Q Consensus       175 ~~la~~l~v~~~~v  188 (332)
                      ...=..+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (601)
T PRK03659        528 RKTLVSLGMHPHQA  541 (601)
T ss_pred             HHHHHHcCCCHHHH
Confidence            44445667777665

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.03  E-value=0.085  Score=52.01  Aligned_cols=117  Identities=20%  Similarity=0.262  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhh-------cCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi   91 (332)
                      .+++.|+||+|.+|..++..|+..|.  +++++|.........++........+. ..+...+.+..       +...|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            36899999999999999999999887  899999854222222222111111111 11111111111       236899


Q ss_pred             EEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           92 VIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        92 Vi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      ||+++|.....   ..+   ....+..|+.....+.+.+...   .+++.||++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            99999865321   122   2234556777777777776542   24466777654

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.02  E-value=0.034  Score=47.09  Aligned_cols=56  Identities=27%  Similarity=0.457  Sum_probs=41.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +.++|+|||.+..+|..++..|...+.  .+.+.+.+                       |.++++.++.||+||.++|.
T Consensus        35 ~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G~   89 (160)
T PF02882_consen   35 EGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVGK   89 (160)
T ss_dssp             TT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SSS
T ss_pred             CCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeecc
Confidence            346899999988999999999998876  66666543                       24677889999999999887


Q ss_pred             C
Q 020049           99 P   99 (332)
Q Consensus        99 ~   99 (332)
                      |
T Consensus        90 ~   90 (160)
T PF02882_consen   90 P   90 (160)
T ss_dssp             T
T ss_pred             c
Confidence            6

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.16  Score=46.63  Aligned_cols=110  Identities=18%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh------cCCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------LTGM   89 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------~~~a   89 (332)
                      .+.|+|| |.+|..++..|. .|.  +|++.|+++  ......++....  .++..+. +-+|   .+.+      +...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            5677777 899999999986 666  999999876  222233343221  1222111 1122   1222      2468


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      |++|.++|... ...+....+..|+.....+.+.+.++- +++.+++++.
T Consensus        78 d~li~nAG~~~-~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS  126 (275)
T PRK06940         78 TGLVHTAGVSP-SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS  126 (275)
T ss_pred             CEEEECCCcCC-chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            99999998752 123344556777766666666655442 2344445443

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.28  Score=43.71  Aligned_cols=115  Identities=12%  Similarity=0.085  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HH-------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~   86 (332)
                      .+.+.|+||++.+|..++..|++.|.  +|+++++++  .+....++....  ..+..+. ..+|   .+       +.+
T Consensus         5 ~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (227)
T PRK08862          5 SSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQF   80 (227)
T ss_pred             CeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35799999989999999999999998  899999876  223333343221  1122111 1112   21       122


Q ss_pred             C-CCcEEEEcCCCCCCC----CCChhhh---HhhhH----HHHHHHHHHHHhhCCCcEEEEecC
Q 020049           87 T-GMDLVIIPAGVPRKP----GMTRDDL---FNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~-~aDiVi~~~g~~~~~----g~~r~~~---~~~n~----~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      . .-|++|..+|....+    ..+..++   +..|.    ...+.+.+.+.+....+.|+++|.
T Consensus        81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            3 689999998743221    1222222   22233    334455566655444566777664

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.97  E-value=0.47  Score=43.47  Aligned_cols=162  Identities=15%  Similarity=0.160  Sum_probs=84.3

Q ss_pred             CCCCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCC-eEEE-EeCCCCH-------H
Q 020049           16 GGAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGA-VVRG-FLGQPQL-------E   83 (332)
Q Consensus        16 ~~~~~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~-~v~~-~~~~~d~-------~   83 (332)
                      +..+.+++.|+||+  +.+|..+|..|+..|.  .|++.++++ ....+.++....... .+.. .+...+.       .
T Consensus         6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~--~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   83 (272)
T PRK08159          6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGA--ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLE   83 (272)
T ss_pred             ccccCCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHH
Confidence            34445679999995  5799999999999998  888887653 222222232211001 1110 1000111       1


Q ss_pred             hhcCCCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHH
Q 020049           84 NALTGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                      +.+...|++|..+|....     +  ..+.   ...+.-|+.....+.+.+.++- .++.||++|.....          
T Consensus        84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~----------  153 (272)
T PRK08159         84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAE----------  153 (272)
T ss_pred             HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccc----------
Confidence            223468999999986431     1  1222   2334556655555555444332 24666666542211          


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                        .+.|..-.++.+.-....+.+.++..+.  +..|++..+
T Consensus       154 --~~~p~~~~Y~asKaal~~l~~~la~el~--~~gIrVn~v  190 (272)
T PRK08159        154 --KVMPHYNVMGVAKAALEASVKYLAVDLG--PKNIRVNAI  190 (272)
T ss_pred             --cCCCcchhhhhHHHHHHHHHHHHHHHhc--ccCeEEEEe
Confidence              1123223455554444456667777664  445544444

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.96  E-value=0.13  Score=43.52  Aligned_cols=66  Identities=12%  Similarity=0.081  Sum_probs=44.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||.|+|| |.+|...+..|+..|.  +|++++...... ..++.    ...+..  ..-. ++.++++|+||.+.
T Consensus        13 ~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~~-l~~l~----~i~~~~--~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         13 NKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICKE-MKELP----YITWKQ--KTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCHH-HHhcc----CcEEEe--cccC-hhcCCCceEEEECC
Confidence            368999999 9999999999999888  899997542222 22221    111211  1112 35689999999873

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.94  E-value=0.052  Score=50.93  Aligned_cols=70  Identities=13%  Similarity=0.102  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+|+|+|+ |.+|...+..+.......+|.++|++.  .+..+.++...  ...+. .   .+.++++.+||+|+.+-
T Consensus       125 ~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~-~---~~~~~av~~aDiVitaT  196 (304)
T PRK07340        125 PGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE-P---LDGEAIPEAVDLVVTAT  196 (304)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE-E---CCHHHHhhcCCEEEEcc
Confidence            368999999 999999988886533335899999986  33444445432  12222 1   35678999999999974

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.93  E-value=0.028  Score=48.03  Aligned_cols=56  Identities=29%  Similarity=0.488  Sum_probs=44.5

Q ss_pred             CCCCeEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~-vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ....||+|+|+ |. +|..++..|...+.  +|.+++++.                       .++.+.+++||+||.+.
T Consensus        42 l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat   95 (168)
T cd01080          42 LAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAV   95 (168)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcC
Confidence            45579999999 86 58889999988877  788888541                       25677899999999997


Q ss_pred             CCC
Q 020049           97 GVP   99 (332)
Q Consensus        97 g~~   99 (332)
                      +.|
T Consensus        96 ~~~   98 (168)
T cd01080          96 GKP   98 (168)
T ss_pred             CCC
Confidence            765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.93  E-value=0.14  Score=45.20  Aligned_cols=69  Identities=17%  Similarity=0.126  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..||+|||+ |.+|..-+..|+..|.  .|+++|.+... ...++....   .+.......+ .+.+.++|+||.+-
T Consensus         9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at   77 (205)
T TIGR01470         9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAAT   77 (205)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECC
Confidence            358999999 9999999999998887  89999976432 222343321   3333222223 46689999999884

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.88  E-value=0.066  Score=51.69  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +|+++|.+.
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~Gvg-~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAGVG-TITLIDDDT   75 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEEeCCE
Confidence            358999999 99999999999998864 899999874

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.88  E-value=0.031  Score=54.78  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=64.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+..+|+|+|+ |.+|..++..|...|. .+|+++|++..+  ..+..+.     .....   ..++.+++.++|+||.+
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g-----~~~i~---~~~l~~~l~~aDvVi~a  247 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELG-----GEAVK---FEDLEEYLAEADIVISS  247 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcC-----CeEee---HHHHHHHHhhCCEEEEC
Confidence            44579999999 9999999999988773 389999987522  2222221     11111   13567889999999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  144 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t  144 (332)
                      .+.+..- .        +.    +..+.+.... ...+++-.++|-|+-.
T Consensus       248 T~s~~~i-i--------~~----e~l~~~~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       248 TGAPHPI-V--------SK----EDVERALRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             CCCCCce-E--------cH----HHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence            6544210 0        11    1112221111 2347778899988863

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=95.87  E-value=0.039  Score=51.75  Aligned_cols=71  Identities=17%  Similarity=0.072  Sum_probs=51.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ..+++|||+ |..|...+..+.....+.+|.++|++.  ....+.++.+.. ...+...   .+.++++++||+|+.+
T Consensus       117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEe
Confidence            468999999 999988877776655568999999987  344455555421 2344443   3578999999999986

>PRK08017 oxidoreductase; Provisional

Probab=95.85  E-value=0.06  Score=48.33  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++|.|+||+|.+|..++..|++.|+  +|++++++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998887  899998865

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.85  E-value=0.058  Score=51.13  Aligned_cols=71  Identities=17%  Similarity=0.244  Sum_probs=49.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+++|||+ |..+...+..|.......+|.+++++.  .+..+.++.+.. ...+..   ..++++++.+||+|+.+-
T Consensus       130 ~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       130 SVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTT  202 (326)
T ss_pred             cEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEec
Confidence            58999999 999998888776433346899999986  334444454321 122332   246788999999999974

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.84  E-value=0.12  Score=45.43  Aligned_cols=34  Identities=18%  Similarity=0.398  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|. .+|+++|.+.
T Consensus        22 s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          22 ARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             CcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            58999999 8899999999999987 4899999874

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.84  E-value=0.089  Score=50.85  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +|.++|.+
T Consensus       135 ~~~VlvvG~-GG~Gs~ia~~La~~Gvg-~i~lvD~d  168 (376)
T PRK08762        135 EARVLLIGA-GGLGSPAALYLAAAGVG-TLGIVDHD  168 (376)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCC
Confidence            358999999 99999999999998874 89999987

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.82  E-value=0.088  Score=50.54  Aligned_cols=34  Identities=29%  Similarity=0.480  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +|.++|.+.
T Consensus        29 ~~VlivG~-GGlGs~~a~~La~~Gvg-~i~lvD~D~   62 (355)
T PRK05597         29 AKVAVIGA-GGLGSPALLYLAGAGVG-HITIIDDDT   62 (355)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCE
Confidence            58999999 99999999999998874 899999875

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=95.82  E-value=0.034  Score=53.25  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~-~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +||+|+||+|.||+.+...|. +..+ ..+++++...+..|....+...  ...+..   .++ .+++++.|+|++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5454 3688888875422221111111  112222   222 247899999999876

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.82  E-value=0.51  Score=42.68  Aligned_cols=158  Identities=12%  Similarity=0.105  Sum_probs=79.2

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCC-eEEE-EeCCCCHH-------hhcC
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGA-VVRG-FLGQPQLE-------NALT   87 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~-~v~~-~~~~~d~~-------~a~~   87 (332)
                      .+.+.|+||+  +.+|..+|..|++.|.  +|++.|+++. .....++....... .+.. .+...+.+       +.+.
T Consensus        10 ~k~~lItGas~g~GIG~a~a~~la~~G~--~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533         10 GKRGLVVGIANEQSIAWGCARAFRALGA--ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            3578999996  3799999999999988  8999998752 11122222111000 1110 11011111       2235


Q ss_pred             CCcEEEEcCCCCCCC-------CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKP-------GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~-------g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..|++|..+|.....       ..+   ....+.-|+.....+.+.+..+- ..+.|++++......            .
T Consensus        88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~------------~  155 (258)
T PRK07533         88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEK------------V  155 (258)
T ss_pred             CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccccc------------C
Confidence            679999999864311       112   22334556555555544443332 245666665322111            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+.-.-..+.+.++..++  +..|++..+
T Consensus       156 ~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~v  190 (258)
T PRK07533        156 VENYNLMGPVKAALESSVRYLAAELG--PKGIRVHAI  190 (258)
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            12112344443333455666776664  445544443

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.81  E-value=0.043  Score=54.28  Aligned_cols=90  Identities=20%  Similarity=0.208  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH-HHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ..++|+|+|. |.+|..+|..+...|.  +|+.+|+++.+. .+..  + .  .  ..    .+++++++.||+|+.+.|
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G--~--~~----~~leell~~ADIVI~atG  318 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G--Y--QV----VTLEDVVETADIFVTATG  318 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C--c--ee----ccHHHHHhcCCEEEECCC
Confidence            3468999999 9999999999987776  899998876322 1111  1 1  1  11    246788999999999854


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      .+               .++.  .+.+....|.+++++++-.
T Consensus       319 t~---------------~iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        319 NK---------------DIIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             cc---------------cccC--HHHHhccCCCcEEEEcCCC
Confidence            22               1111  1234444588999998754

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.80  E-value=0.67  Score=41.94  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=79.1

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 020049           21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL   86 (332)
Q Consensus        21 ~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~   86 (332)
                      +.+.|+||+  +.+|..++..|++.|.  +|++.+++. ......++.+......+..+. +-+|.          .+.+
T Consensus         8 k~~lItGa~~s~GIG~aia~~la~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          8 KTYVVMGVANKRSIAWGIARSLHNAGA--KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            579999995  6899999999999998  899988653 111122222111011121111 11121          1223


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCChhh---hHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRK-----P--GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-----~--g~~r~~---~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|.++|....     +  ..+..+   .+.-|......+.+.+.++- +.+.||++|......            
T Consensus        86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------  153 (257)
T PRK08594         86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGER------------  153 (257)
T ss_pred             CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCcc------------
Confidence            558999999886421     1  122222   22334444333333333222 356777776433221            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+...-..|.+.++..+.  +..|++..+
T Consensus       154 ~~~~~~~Y~asKaal~~l~~~la~el~--~~gIrvn~v  189 (257)
T PRK08594        154 VVQNYNVMGVAKASLEASVKYLANDLG--KDGIRVNAI  189 (257)
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHhh--hcCCEEeee
Confidence            112222345544444556677777664  444544433

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.79  E-value=0.03  Score=48.80  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=50.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||.|.-||..++..|+..+.  .|.++|++.  .......+.|..+  .....  +.++.+.++.||+||.++
T Consensus        61 ~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~~--~~~l~~~~~~ADIVIsAv  134 (197)
T cd01079          61 YGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTDE--EAMTLDCLSQSDVVITGV  134 (197)
T ss_pred             CCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccch--hhHHHHHhhhCCEEEEcc
Confidence            346899999999999999999998886  899999876  1110011112110  00000  112668899999999999


Q ss_pred             CCC
Q 020049           97 GVP   99 (332)
Q Consensus        97 g~~   99 (332)
                      |.|
T Consensus       135 G~~  137 (197)
T cd01079         135 PSP  137 (197)
T ss_pred             CCC
Confidence            876

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK07589 ornithine cyclodeaminase; Validated

Probab=95.78  E-value=0.059  Score=51.47  Aligned_cols=71  Identities=18%  Similarity=0.295  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+++|||+ |..+...+..+..-..+.+|.++|++.  .+..+.++.+.  ...+..   ..+.++++++||+|+.+-
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            367999999 999988776665544567999999987  34445556542  223443   246789999999999864

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.76  E-value=0.093  Score=51.47  Aligned_cols=92  Identities=18%  Similarity=0.148  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ...+|+|+|. |.+|..++..+...|.  +|+.+|+++.+.... ..+ .  .  ..    .+++++++++|+||.+.|.
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G--~--~v----~~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-G--F--RV----MTMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-C--C--Ee----cCHHHHHhCCCEEEECCCC
Confidence            4468999999 9999999999988887  899999987332111 111 1  1  11    1357889999999987532


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      +               .++.  .+.+....+.+++++++-+.
T Consensus       278 ~---------------~vI~--~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        278 K---------------DVIT--AEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             H---------------HHHH--HHHHhcCCCCCEEEEcCCCC
Confidence            1               2222  12233334678888887443

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.76  E-value=0.15  Score=47.02  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..+|+|+|+ |.+|+.++..|+..|.. +|.|+|.+.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar~GVg-~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALARTGIG-AITLIDMDD   64 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCCC-EEEEEeCCE
Confidence            358999999 99999999999999864 899999874

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=95.75  E-value=0.018  Score=54.96  Aligned_cols=71  Identities=24%  Similarity=0.410  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||+|+||+|++|..+...|...++ ..++.++...+..|...+.  .  ...+...  ..+ .+++.++|+||++.+
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~--~~~~~v~--~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--E--GRDYTVE--ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--c--CceeEEE--eCC-HHHHcCCCEEEECCC
Confidence            37999999999999999998887543 4577766554322222211  1  1222221  123 356799999999865

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.74  E-value=0.021  Score=53.86  Aligned_cols=74  Identities=26%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--CCeEEEEeCCCCHHh-hcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLEN-ALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~-a~~~aDiVi~~   95 (332)
                      +++||+|+||+|+.|..+...|...+.. |+.++...+..|....-.+...  ...+...  ..|.++ ...+||+||++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            3579999999999999999999888754 7888887653443332222221  1223321  122222 35669999998

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.74  E-value=0.037  Score=53.37  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=53.1

Q ss_pred             hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcE
Q 020049           13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDL   91 (332)
Q Consensus        13 ~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDi   91 (332)
                      +.-++.++.||+|+|+ |.+|...+..+...|.  +|..+|++..+.  ..+.... ...+.. .....++.+.++++|+
T Consensus       160 ~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aDv  233 (370)
T TIGR00518       160 GGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRADL  233 (370)
T ss_pred             cCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCCE
Confidence            3334456778999999 9999999999988887  899999875221  1121111 111211 1111346678899999


Q ss_pred             EEEcCCCC
Q 020049           92 VIIPAGVP   99 (332)
Q Consensus        92 Vi~~~g~~   99 (332)
                      ||.+.+.+
T Consensus       234 VI~a~~~~  241 (370)
T TIGR00518       234 LIGAVLIP  241 (370)
T ss_pred             EEEccccC
Confidence            99997654

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.74  E-value=0.049  Score=51.33  Aligned_cols=71  Identities=14%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+|+|||+ |.+|...+..+.......+|.++|++.  .+..+.++.+.  ...+...   .+.++++++||+|+.+.
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCAT  197 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEee
Confidence            368999999 999999987665432245999999876  33444445432  1223332   35678899999997653

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.72  E-value=0.069  Score=52.65  Aligned_cols=123  Identities=24%  Similarity=0.316  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|.|+|+ |.+|..+|..|+..|+  +|+++|.+...   ....++....  ..+.  ..... .+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~--~~~~--~~~~~-~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG--IELV--LGEYP-EEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CEEE--eCCcc-hhHhhcCCEEEECC
Confidence            468999999 8899999999999998  99999997522   1223332211  2222  11111 24467899999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC--CchHHHHHHHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV--NSTVPIAAEVFKK  153 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~--~~~t~~~~~~~~~  153 (332)
                      |.+.... .....-..+++++.......+.. + ..+|-+|=..  .+.+.+++.++..
T Consensus        77 g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         77 GVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8642211 11111234566655544433322 2 3355554333  3444555555543

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=95.72  E-value=0.28  Score=44.26  Aligned_cols=42  Identities=24%  Similarity=0.274  Sum_probs=32.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEccCC--cHHHHHHHh
Q 020049           22 KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN--TPGVTADIS   65 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~----~~~~~ei~L~D~~~--~~~~~~dl~   65 (332)
                      .+.|+||++.+|..++..|+.    .|.  .|++.++++  ......++.
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~--~V~~~~r~~~~~~~~~~~l~   49 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGS--VLVLSARNDEALRQLKAEIG   49 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCc--EEEEEEcCHHHHHHHHHHHH
Confidence            478999999999999998886    466  899999876  333344454

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=95.71  E-value=0.062  Score=52.37  Aligned_cols=67  Identities=24%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ....+|+|+|. |.+|..++..+...|.  +|+.+|.++.+.... ..+ .  .  ..    .+.+++++++|+||.+.|
T Consensus       193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~-G--~--~v----~~leeal~~aDVVItaTG  259 (406)
T TIGR00936       193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMD-G--F--RV----MTMEEAAKIGDIFITATG  259 (406)
T ss_pred             CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-Hhc-C--C--Ee----CCHHHHHhcCCEEEECCC
Confidence            34569999999 9999999999987776  899999887322111 111 1  1  11    134678999999998753

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.37  Score=44.41  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=30.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .+.+.|+||++.+|..++..|+..|.  +|+++|.+
T Consensus         6 ~k~~lITGas~GIG~aia~~la~~G~--~vii~~~~   39 (286)
T PRK07791          6 GRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   39 (286)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEeeCC
Confidence            35799999999999999999999888  88998875

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.70  E-value=0.098  Score=50.91  Aligned_cols=35  Identities=23%  Similarity=0.466  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +|.|+|-+.
T Consensus        42 ~~~VlviG~-GGlGs~va~~La~~Gvg-~i~lvD~D~   76 (392)
T PRK07878         42 NARVLVIGA-GGLGSPTLLYLAAAGVG-TLGIVEFDV   76 (392)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCCE
Confidence            358999999 99999999999998875 899999875

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.65  E-value=0.029  Score=53.35  Aligned_cols=71  Identities=23%  Similarity=0.478  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||+|+||+|++|..++..|...++ ..+|..+-.++..+...++.    ...+...  ..+ ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~----g~~i~v~--d~~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFK----GKELKVE--DLT-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeC----CceeEEe--eCC-HHHHcCCCEEEECCC
Confidence            36999999999999999999988653 34777775543222222221    1223322  112 245689999999864

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.64  E-value=0.043  Score=55.47  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|+|- |.+|+.+|..|..-|.  +|+.||.........++   .    +..   ..++++.+++||+|++..
T Consensus       138 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~---~~~l~ell~~aDvV~l~l  201 (525)
T TIGR01327       138 GKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL---G----VEL---VDDLDELLARADFITVHT  201 (525)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc---C----CEE---cCCHHHHHhhCCEEEEcc
Confidence            368999999 9999999999987676  99999975322222211   1    121   135789999999999984

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=95.64  E-value=0.13  Score=47.78  Aligned_cols=74  Identities=19%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-------------------HH--HHHHHhcCCCCCeEEEEeC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------------------PG--VTADISHMDTGAVVRGFLG   78 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-------------------~~--~~~dl~~~~~~~~v~~~~~   78 (332)
                      ..||.|+|+ |.+|+.+|..|+..|.. +|.|+|.+..                   ++  .+..|...+...++..+..
T Consensus        19 ~s~VLIvG~-gGLG~EiaKnLalaGVg-~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~   96 (286)
T cd01491          19 KSNVLISGL-GGLGVEIAKNLILAGVK-SVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG   96 (286)
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence            358999999 99999999999999874 8999998750                   01  1122333333445554433


Q ss_pred             CCCHHhhcCCCcEEEEcC
Q 020049           79 QPQLENALTGMDLVIIPA   96 (332)
Q Consensus        79 ~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+ ++-+.+.|+||.+.
T Consensus        97 ~~~-~~~l~~fdvVV~~~  113 (286)
T cd01491          97 PLT-TDELLKFQVVVLTD  113 (286)
T ss_pred             cCC-HHHHhcCCEEEEec
Confidence            323 57789999999883

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=95.63  E-value=0.042  Score=55.51  Aligned_cols=63  Identities=25%  Similarity=0.361  Sum_probs=46.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|+|. |.+|+.+|..+..-|.  +|+.||.........++       .+...    ++++.++.||+|++..
T Consensus       140 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~l  202 (526)
T PRK13581        140 GKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHT  202 (526)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEcc
Confidence            468999999 9999999999987677  99999975422221111       11221    4688999999999985

>PLN02494 adenosylhomocysteinase

Probab=95.62  E-value=0.069  Score=52.79  Aligned_cols=90  Identities=20%  Similarity=0.160  Sum_probs=60.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..+|+|+|. |.+|..+|..+...|.  +|+.+|+++.+ ..+.+  +. +  .  ..    +++++++.+|+||.+.|.
T Consensus       254 GKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~--~G-~--~--vv----~leEal~~ADVVI~tTGt  319 (477)
T PLN02494        254 GKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALM--EG-Y--Q--VL----TLEDVVSEADIFVTTTGN  319 (477)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHh--cC-C--e--ec----cHHHHHhhCCEEEECCCC
Confidence            468999999 9999999999987776  89999988632 22221  11 1  1  11    356789999999997542


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      .               .++.  .+.+....+++++++++-+.
T Consensus       320 ~---------------~vI~--~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        320 K---------------DIIM--VDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             c---------------cchH--HHHHhcCCCCCEEEEcCCCC
Confidence            2               1110  23333345789999998753

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.61  E-value=0.39  Score=44.98  Aligned_cols=115  Identities=12%  Similarity=0.034  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      .+.+.|+||++.+|..++..|+..| .  .|++.++++.  .....++...  ...+..+. .-+|.   +++       
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   78 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES   78 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            3579999999999999999999888 7  8999988762  2222333211  12222111 11221   111       


Q ss_pred             cCCCcEEEEcCCCCCCC----CCCh---hhhHhhhHH----HHHHHHHHHHhhCC-CcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKP----GMTR---DDLFNINAG----IVRTLCEGIAKCCP-NATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~----g~~r---~~~~~~n~~----~~~~i~~~i~~~~p-~a~viv~tN  138 (332)
                      +...|++|..+|.....    ..+.   ...+..|..    .++.+.+.+.+... .+.||++|.
T Consensus        79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS  143 (314)
T TIGR01289        79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGS  143 (314)
T ss_pred             CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEec
Confidence            34689999999863221    1222   222344543    45566666665432 356666643

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.60  E-value=0.057  Score=44.73  Aligned_cols=56  Identities=27%  Similarity=0.431  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +.++|+|+|.+..+|..++..|...+.  ++.++|.+                       +.+++++++.||+||.+.|.
T Consensus        27 ~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg~   81 (140)
T cd05212          27 DGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSPK   81 (140)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecCC
Confidence            346899999988999999988887776  77777643                       22567889999999999876


Q ss_pred             C
Q 020049           99 P   99 (332)
Q Consensus        99 ~   99 (332)
                      +
T Consensus        82 ~   82 (140)
T cd05212          82 P   82 (140)
T ss_pred             C
Confidence            5

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK13529 malate dehydrogenase; Provisional

Probab=95.60  E-value=0.087  Score=52.99  Aligned_cols=105  Identities=18%  Similarity=0.279  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEccCC--c--H----HHHHHHhcCCCCCeEEEE---eCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--T--P----GVTADISHMDTGAVVRGF---LGQ   79 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~----~~~~-----~ei~L~D~~~--~--~----~~~~dl~~~~~~~~v~~~---~~~   79 (332)
                      ..||++.|| |..|..+|..|..    .|+-     .+++++|.+-  .  +    .....+.+..  ......   ...
T Consensus       295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~~  371 (563)
T PRK13529        295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGDV  371 (563)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccCC
Confidence            469999999 9999999987765    4652     5899999875  1  1    1111222211  111100   012


Q ss_pred             CCHHhhcCCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           80 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        80 ~d~~~a~~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      .++.++++++  |++|=+.+.+   |           -+.+++.+.|.+++++.+|.-.|||..
T Consensus       372 ~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~  421 (563)
T PRK13529        372 ISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS  421 (563)
T ss_pred             CCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            4789999999  9988765443   2           134588889999999999888899997

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.60  E-value=0.17  Score=45.98  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~   56 (332)
                      ++.||.|||+ |.+|+.++..|+..|.         ..+|+++|.+.
T Consensus        10 ~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736        10 RPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             CCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            3469999999 9999999999987642         12999999875

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.59  E-value=0.075  Score=51.09  Aligned_cols=71  Identities=18%  Similarity=0.170  Sum_probs=43.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++|+|+||+|.+|..+...++.. .+ ..+++++.....-+....+..    .....+. ..+ .+.++++|+|+++++
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g----~~~~v~~-~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGG----KEGTLQD-AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCC----CcceEEe-cCC-hhHhcCCCEEEECCC
Confidence            68999999999999999855554 44 456888765432122211221    1112221 123 356799999999875

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.58  E-value=0.059  Score=52.97  Aligned_cols=105  Identities=18%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+..+|+|+|+ |.+|..++..|...|. .+|+++|++..+  ..+.++.     .....   ..++.+++.++|+||.+
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~a  249 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISS  249 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEEC
Confidence            34579999999 9999999998887664 379999987522  2222221     11211   13566788999999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCCCCchH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTV  144 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP~~~~t  144 (332)
                      .+.+..- .        +...+..   .+... ....+++-.++|-|+-.
T Consensus       250 T~s~~~~-i--------~~~~l~~---~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        250 TGAPHPI-I--------GKGMVER---ALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CCCCCcE-E--------cHHHHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence            6654211 0        1111111   11111 24567788899998863

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.58  E-value=0.059  Score=55.62  Aligned_cols=137  Identities=17%  Similarity=0.217  Sum_probs=80.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi~~   95 (332)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.|+.+  +..+.+.. ..-+.+  +.++.    +..+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence            368999999 9999999999998888  89999998632  22232222 122222  12332    1345689999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      ...+           ..|    ..++..+++..|+..++.-+ |+...      +.+++ .|-  +.++--+.-.+.++.
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~------~~L~~-~Ga--d~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHY------IRLRQ-AGV--EKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH------HHHHH-CCC--CEEehhhHhHHHHHH
Confidence            3211           333    34556677778987665544 44321      12233 233  344433444455555


Q ss_pred             HHHHHHhCCCCCCC
Q 020049          175 TFVAEVLGLDPRDV  188 (332)
Q Consensus       175 ~~la~~l~v~~~~v  188 (332)
                      +.+-+.+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            56666777776443

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.56  E-value=0.024  Score=54.02  Aligned_cols=72  Identities=24%  Similarity=0.472  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.+||+|+||+|.+|..+...|...+ + ..+|.++...+..|+...+..    ..+...  ..| .+.++++|+|++++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~----~~l~v~--~~~-~~~~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG----REIIIQ--EAK-INSFEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC----cceEEE--eCC-HHHhcCCCEEEECC
Confidence            45799999999999999999998544 3 345888876543333222221    123322  124 35679999999986


Q ss_pred             C
Q 020049           97 G   97 (332)
Q Consensus        97 g   97 (332)
                      +
T Consensus        77 ~   77 (347)
T PRK06728         77 G   77 (347)
T ss_pred             C
Confidence            4

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=95.53  E-value=0.1  Score=40.62  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=43.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+|.|||+ |.+|..-+..|+..|.  +|.++....  ..   ...   ...+..    ..+++.+.++|+|+.+.
T Consensus         7 ~~~vlVvGg-G~va~~k~~~Ll~~gA--~v~vis~~~--~~---~~~---~i~~~~----~~~~~~l~~~~lV~~at   68 (103)
T PF13241_consen    7 GKRVLVVGG-GPVAARKARLLLEAGA--KVTVISPEI--EF---SEG---LIQLIR----REFEEDLDGADLVFAAT   68 (103)
T ss_dssp             T-EEEEEEE-SHHHHHHHHHHCCCTB--EEEEEESSE--HH---HHT---SCEEEE----SS-GGGCTTESEEEE-S
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCch--hh---hhh---HHHHHh----hhHHHHHhhheEEEecC
Confidence            458999999 9999999999999886  999998763  11   111   122221    23457799999999874

>PRK06823 ornithine cyclodeaminase; Validated

Probab=95.50  E-value=0.071  Score=50.31  Aligned_cols=71  Identities=14%  Similarity=0.125  Sum_probs=50.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+++|+|+ |..+...+..+.....+.+|.++|++..  ...+..+.+.  ...+...   .+.++++++||+|+.+-
T Consensus       128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence            368999999 9999888877766555689999999873  3333334332  2334432   35689999999999863

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.50  E-value=0.03  Score=53.32  Aligned_cols=71  Identities=21%  Similarity=0.377  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||+|+||+|++|.-+...|...+ ...+|.++-..+..|....+..    ..+...  ..+. +.++++|+|+++.+
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~--~~~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR--EVDS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe--eCCh-HHhcCCCEEEEcCC
Confidence            4799999999999999999998654 2447777755442232222211    122321  1232 34789999999853

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.49  E-value=0.059  Score=50.77  Aligned_cols=73  Identities=26%  Similarity=0.381  Sum_probs=46.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHH-HHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||+|+||+|.||+.+...|.... ++.++.++=..+..|.. .++..-..  .+..  ...| ...++++|+|+.++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--cccc-ccccccCCEEEEeCc
Confidence            3689999999999999999998854 46667777665433332 33322111  1110  0123 255779999999986

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=95.46  E-value=0.092  Score=53.01  Aligned_cols=98  Identities=21%  Similarity=0.293  Sum_probs=69.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEccCC--cHH-------HHHHHhcCCCCCeEEEEeCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPG-------VTADISHMDTGAVVRGFLGQP   80 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~-----~~~-----~~ei~L~D~~~--~~~-------~~~dl~~~~~~~~v~~~~~~~   80 (332)
                      ..||++.|| |..|..+|..|..     .|+     ..+++++|.+-  ..+       ....+.+.     ..   ...
T Consensus       321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-----~~---~~~  391 (581)
T PLN03129        321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-----HE---PGA  391 (581)
T ss_pred             hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-----cc---cCC
Confidence            469999999 9999999987765     354     25899999875  111       11112211     11   124


Q ss_pred             CHHhhcCC--CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           81 QLENALTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        81 d~~~a~~~--aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      ++.+++++  +|++|=+.+.+   |           -+.+++.+.|.+++++.+|.-.|||.
T Consensus       392 ~L~e~v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt  439 (581)
T PLN03129        392 SLLEAVKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT  439 (581)
T ss_pred             CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            78999999  89988775543   2           13457888899999999988889998

>PRK07411 hypothetical protein; Validated

Probab=95.41  E-value=0.15  Score=49.68  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cH----------------HHHHHHhcCCCCCeEEEEeC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TP----------------GVTADISHMDTGAVVRGFLG   78 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~----------------~~~~dl~~~~~~~~v~~~~~   78 (332)
                      ..||+|+|+ |.+|+.++..|+..|.. +|.|+|-+.     +.                ..+..+.+.....++..+..
T Consensus        38 ~~~VlivG~-GGlG~~va~~La~~Gvg-~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~  115 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLAAAGIG-RIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYET  115 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEec
Confidence            358999999 99999999999999874 999999874     10                11122333322334443321


Q ss_pred             --C-CCHHhhcCCCcEEEEcC
Q 020049           79 --Q-PQLENALTGMDLVIIPA   96 (332)
Q Consensus        79 --~-~d~~~a~~~aDiVi~~~   96 (332)
                        + .+..+-++++|+||.+.
T Consensus       116 ~~~~~~~~~~~~~~D~Vvd~~  136 (390)
T PRK07411        116 RLSSENALDILAPYDVVVDGT  136 (390)
T ss_pred             ccCHHhHHHHHhCCCEEEECC
Confidence              1 12235689999999984

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.40  E-value=0.93  Score=41.10  Aligned_cols=34  Identities=24%  Similarity=0.155  Sum_probs=28.3

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           20 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        20 ~~kI~IiGa--~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .+.+.|+||  ++.+|..++..|+..|.  +|++.+..
T Consensus         6 ~k~vlItGas~~~GIG~a~a~~l~~~G~--~v~~~~~~   41 (260)
T PRK06997          6 GKRILITGLLSNRSIAYGIAKACKREGA--ELAFTYVG   41 (260)
T ss_pred             CcEEEEeCCCCCCcHHHHHHHHHHHCCC--eEEEEccc
Confidence            457999996  46899999999999998  88888653

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=95.40  E-value=0.16  Score=48.46  Aligned_cols=66  Identities=17%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEccCCcH--H-HHHHHhcCCCCCeEEEEe
Q 020049           21 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTGAVVRGFL   77 (332)
Q Consensus        21 ~kI~IiGa~G~--------------------vG~~~a~~l~~~~~~~ei~L~D~~~~~--~-~~~dl~~~~~~~~v~~~~   77 (332)
                      |||.|-|| |+                    =|..+|..|+..|+  +|+++|+++..  . ....+...    .+..  
T Consensus         1 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~--~V~v~Dr~~~~l~~~~~~~l~~~----Gi~~--   71 (342)
T PRK12557          1 MKVSVYGA-GNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGH--DVVLAEPNRSILSEELWKKVEDA----GVKV--   71 (342)
T ss_pred             CeeEEEcC-cchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCC--eEEEEECCHHHhhHHHHHHHHHC----CCEE--
Confidence            68888888 74                    35677888888887  99999987621  1 22223221    1232  


Q ss_pred             CCCCHHhhcCCCcEEEEcC
Q 020049           78 GQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        78 ~~~d~~~a~~~aDiVi~~~   96 (332)
                       +++..+++++||+||++.
T Consensus        72 -asd~~eaa~~ADvVIlaV   89 (342)
T PRK12557         72 -VSDDAEAAKHGEIHILFT   89 (342)
T ss_pred             -eCCHHHHHhCCCEEEEEC
Confidence             235568889999999984

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.39  E-value=0.049  Score=50.57  Aligned_cols=56  Identities=20%  Similarity=0.406  Sum_probs=43.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +.++|+|+|++|.+|..++..|+..+.  +|.+++..                       +.++.+.+++||+||.+.|.
T Consensus       158 ~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~AtG~  212 (283)
T PRK14192        158 AGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAVGK  212 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEccCC
Confidence            346899999944599999999988876  88888641                       22456778999999999864


Q ss_pred             C
Q 020049           99 P   99 (332)
Q Consensus        99 ~   99 (332)
                      |
T Consensus       213 ~  213 (283)
T PRK14192        213 P  213 (283)
T ss_pred             C
Confidence            4

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.38  E-value=0.11  Score=50.40  Aligned_cols=73  Identities=15%  Similarity=0.203  Sum_probs=51.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ...++|||+ |..+...+..++.. +.+.+|.++|+++  +...+.++.+.... ..+...   .+.++++++||+|+.+
T Consensus       155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~---~s~~eav~~ADIVvta  230 (379)
T PRK06199        155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVV---DSIEEVVRGSDIVTYC  230 (379)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEe---CCHHHHHcCCCEEEEc
Confidence            368999999 99998887777653 3367999999987  34455556543111 134442   3678999999999975


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      -
T Consensus       231 T  231 (379)
T PRK06199        231 N  231 (379)
T ss_pred             c
Confidence            3

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=95.37  E-value=0.1  Score=52.42  Aligned_cols=103  Identities=18%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEccCC--c--HH-----HHHHHhcCCCCCeEEEEeCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN--T--PG-----VTADISHMDTGAVVRGFLGQPQ   81 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~----~~~-----~~ei~L~D~~~--~--~~-----~~~dl~~~~~~~~v~~~~~~~d   81 (332)
                      ..||++.|| |..|..+|..|..    .|+     ...++++|.+-  .  +.     ....+.+......  .. ...+
T Consensus       297 d~riv~~GA-GsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~--~~-~~~~  372 (559)
T PTZ00317        297 EQRIVFFGA-GSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAE--DS-SLKT  372 (559)
T ss_pred             hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccc--cc-cCCC
Confidence            469999999 9999999987763    565     25899999875  1  11     1111222110010  00 1247


Q ss_pred             HHhhcCCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           82 LENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        82 ~~~a~~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      +.++++++  |++|=+.+.+   |           -+.+++.+.|.+++++.+|.-.|||.
T Consensus       373 L~e~v~~~KPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~~rPIIFaLSNPt  419 (559)
T PTZ00317        373 LEDVVRFVKPTALLGLSGVG---G-----------VFTEEVVKTMASNVERPIIFPLSNPT  419 (559)
T ss_pred             HHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence            89999999  9988765544   2           13458889999999999988889998

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=95.36  E-value=0.041  Score=49.76  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=49.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |+|.|+||+|++|++++..|+..++  +|+..-++.......  . ...............+..+++|.|.++++.+..
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~   74 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL   74 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence            5899999999999999999998877  777776654222222  2 211111112222345778899999999986544

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.35  E-value=0.11  Score=48.01  Aligned_cols=99  Identities=16%  Similarity=0.289  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      ++|..||- |.+|++.+..|+..|+  .|+.||++.  ....++.+..  ..+..     .+.|..+++|+||...+.|.
T Consensus        36 ~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~G--a~v~~-----sPaeVae~sDvvitmv~~~~  103 (327)
T KOG0409|consen   36 TRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAG--ARVAN-----SPAEVAEDSDVVITMVPNPK  103 (327)
T ss_pred             ceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhc--hhhhC-----CHHHHHhhcCEEEEEcCChH
Confidence            68999999 9999999999999999  999999864  4445566543  22221     24688899999999866431


Q ss_pred             ----------------CCCCCh-hhhHhhhHHHHHHHHHHHHhhCCCcEE
Q 020049          101 ----------------KPGMTR-DDLFNINAGIVRTLCEGIAKCCPNATV  133 (332)
Q Consensus       101 ----------------~~g~~r-~~~~~~n~~~~~~i~~~i~~~~p~a~v  133 (332)
                                      ++|... .|.-.-.-...+++.+.++..  ++|.
T Consensus       104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~--~~~~  151 (327)
T KOG0409|consen  104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK--GGRF  151 (327)
T ss_pred             hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC--CCeE
Confidence                            122211 233233456778888888743  5544

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.35  E-value=0.17  Score=45.57  Aligned_cols=34  Identities=29%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +++|+|-+.
T Consensus        12 ~~VlVvG~-GGvGs~va~~Lar~GVg-~i~LvD~D~   45 (231)
T cd00755          12 AHVAVVGL-GGVGSWAAEALARSGVG-KLTLIDFDV   45 (231)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCC-EEEEECCCE
Confidence            48999999 99999999999999874 999999875

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK07877 hypothetical protein; Provisional

Probab=95.34  E-value=0.1  Score=54.54  Aligned_cols=74  Identities=22%  Similarity=0.382  Sum_probs=49.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cHHH---------------HHHHhcCCCCCeEEEEeC--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---------------TADISHMDTGAVVRGFLG--   78 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~~--   78 (332)
                      .||+|+|+ | +|++++..|+..|.+.+|.|+|-+.     +.-+               +..+...+...++..+..  
T Consensus       108 ~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i  185 (722)
T PRK07877        108 LRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL  185 (722)
T ss_pred             CCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            48999999 9 9999999999999766999999875     1101               112222222344444321  


Q ss_pred             -CCCHHhhcCCCcEEEEcC
Q 020049           79 -QPQLENALTGMDLVIIPA   96 (332)
Q Consensus        79 -~~d~~~a~~~aDiVi~~~   96 (332)
                       ..+..+-++++|+||-+.
T Consensus       186 ~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        186 TEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             CHHHHHHHhcCCCEEEECC
Confidence             134556678999999983

>PRK06436 glycerate dehydrogenase; Provisional

Probab=95.34  E-value=0.087  Score=49.41  Aligned_cols=95  Identities=18%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|+|- |.+|+.+|..+..-|.  +|+.+|.....        ..  .. ..   ..++++.++.||+|++.....
T Consensus       122 gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~--~~-~~---~~~l~ell~~aDiv~~~lp~t  184 (303)
T PRK06436        122 NKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG--IS-SI---YMEPEDIMKKSDFVLISLPLT  184 (303)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC--cc-cc---cCCHHHHHhhCCEEEECCCCC
Confidence            478999999 9999999987765566  99999975311        00  00 11   125789999999999984211


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCchH
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTV  144 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~t  144 (332)
                        +.         +-.++.  .+.+....|++++|+++  .++|.-.
T Consensus       185 --~~---------T~~li~--~~~l~~mk~ga~lIN~sRG~~vd~~a  218 (303)
T PRK06436        185 --DE---------TRGMIN--SKMLSLFRKGLAIINVARADVVDKND  218 (303)
T ss_pred             --ch---------hhcCcC--HHHHhcCCCCeEEEECCCccccCHHH
Confidence              11         111110  23333335788999985  6666553

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.34  E-value=0.18  Score=41.97  Aligned_cols=115  Identities=18%  Similarity=0.173  Sum_probs=71.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeC-CCCH----------Hhhc
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL   86 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~-~~d~----------~~a~   86 (332)
                      .+.|+||+|.+|..++..|+..|. ..|++++.++    ......++....  ..+..+.. .++.          .+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGA-RVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRF   78 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTT-EEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCc-eEEEEeeecccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence            589999999999999999998843 2788998872    223333444322  33333221 1121          1234


Q ss_pred             CCCcEEEEcCCCCCCCCCC------hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           87 TGMDLVIIPAGVPRKPGMT------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~------r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      ...|++|.++|........      ....+..|+.....+.+.+.. .+.+.|+++|...
T Consensus        79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~  137 (167)
T PF00106_consen   79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA  137 (167)
T ss_dssp             SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred             ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence            6899999999876522111      123456676666667777766 4577777776544

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.34  E-value=0.34  Score=46.02  Aligned_cols=93  Identities=18%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC-CcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-aDiVi~~~g~   98 (332)
                      .+|+|+|+ |-+|...++.++..+.  +|+.+|+++. ...+.+|.-.   .-+.. . ..|.-+++++ +|+|+.|++ 
T Consensus       168 ~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGAd---~~i~~-~-~~~~~~~~~~~~d~ii~tv~-  238 (339)
T COG1064         168 KWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGAD---HVINS-S-DSDALEAVKEIADAIIDTVG-  238 (339)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCCc---EEEEc-C-CchhhHHhHhhCcEEEECCC-
Confidence            59999999 8888777777776775  9999999873 3344444211   11121 1 1233344443 999999975 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      +               .-+....+.   ..+++.++.+.+|.
T Consensus       239 ~---------------~~~~~~l~~---l~~~G~~v~vG~~~  262 (339)
T COG1064         239 P---------------ATLEPSLKA---LRRGGTLVLVGLPG  262 (339)
T ss_pred             h---------------hhHHHHHHH---HhcCCEEEEECCCC
Confidence            3               112233333   34788999999984

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=95.30  E-value=0.35  Score=43.82  Aligned_cols=154  Identities=13%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCC---HH-------
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQ---LE-------   83 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d---~~-------   83 (332)
                      .+.+.|+||+  +.+|..++..|+..|.  +|++.+.+.    ......++............ +-+|   ..       
T Consensus         6 ~k~~lItGas~~~GIG~aia~~la~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~d~~~v~~~~~~~~   82 (258)
T PRK07370          6 GKKALVTGIANNRSIAWGIAQQLHAAGA--ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPC-DVQDDAQIEETFETIK   82 (258)
T ss_pred             CcEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEEecCcccchHHHHHHHHHhccCcceEeec-CcCCHHHHHHHHHHHH
Confidence            3578999985  5899999999999988  888876533    12222333222111100000 1112   11       


Q ss_pred             hhcCCCcEEEEcCCCCCC-----C--CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 020049           84 NALTGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  149 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~-----~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~  149 (332)
                      +.+...|++|..+|....     +  ..+.   ...+..|+..    .+.+.+.+.+   .+.|++++......      
T Consensus        83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~---~g~Iv~isS~~~~~------  153 (258)
T PRK07370         83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE---GGSIVTLTYLGGVR------  153 (258)
T ss_pred             HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh---CCeEEEEecccccc------
Confidence            223468999999986432     1  1122   2223344433    4444454442   46677766433211      


Q ss_pred             HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                            +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       154 ------~~~~~~~Y~asKaal~~l~~~la~el~--~~gI~Vn~i  189 (258)
T PRK07370        154 ------AIPNYNVMGVAKAALEASVRYLAAELG--PKNIRVNAI  189 (258)
T ss_pred             ------CCcccchhhHHHHHHHHHHHHHHHHhC--cCCeEEEEE
Confidence                  123223345544334456677777775  455554443

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.30  E-value=0.27  Score=43.68  Aligned_cols=33  Identities=18%  Similarity=0.285  Sum_probs=27.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~   56 (332)
                      .+.|+||+|++|+.++..|++.|.  +|++. +.+.
T Consensus         3 ~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~~   36 (247)
T PRK09730          3 IALVTGGSRGIGRATALLLAQEGY--TVAVNYQQNL   36 (247)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCh
Confidence            689999999999999999999887  77664 4443

>PRK06046 alanine dehydrogenase; Validated

Probab=95.29  E-value=0.11  Score=49.20  Aligned_cols=71  Identities=18%  Similarity=0.254  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+|+|||+ |..|...+..+.....+.++.++|++.  ....+.++.+. ....+...   .+++++++ +|+|+++-
T Consensus       129 ~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~~---~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        129 SKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTVA---EDIEEACD-CDILVTTT  201 (326)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEEe---CCHHHHhh-CCEEEEec
Confidence            368999999 999999888777555567999999987  23333444332 12234432   36778886 99999973

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.28  E-value=0.099  Score=48.54  Aligned_cols=75  Identities=20%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.++++|+|| |..+.++++.|+..|. .+|.++|++..  +..+.++........+... ...++.+.+.++|+||.+-
T Consensus       126 ~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~-~~~~~~~~~~~~divINaT  202 (283)
T PRK14027        126 KLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGV-DARGIEDVIAAADGVVNAT  202 (283)
T ss_pred             CCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEec-CHhHHHHHHhhcCEEEEcC
Confidence            3468999999 9999999999988775 38999998763  3333333221111112211 1112234567899999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-165
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-160
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		2e-93
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		1e-92
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		2e-80
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		2e-80
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		3e-79
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		8e-79
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		3e-19
1guz_A	310	Structural Basis For Thermophilic Protein Stability		3e-17
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		3e-17
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-16
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		2e-16
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		7e-15
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		1e-14
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		1e-14
1guy_A	309	Structural Basis For Thermophilic Protein Stability		1e-14
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-14
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		3e-14
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		4e-12
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		5e-12
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		5e-12
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		8e-12
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		9e-12
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		1e-11
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-11
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-11
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-11
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		3e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		6e-11
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		6e-11
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		9e-11
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		1e-10
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		1e-10
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		1e-10
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		1e-10
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		2e-10
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		3e-10
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		3e-10
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		3e-10
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-10
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		5e-10
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-09
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		1e-09
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-09
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-08
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		3e-07
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		1e-06
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		2e-06
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		3e-06
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		6e-06
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		9e-06
1bmd_A	327	Determinants Of Protein Thermostability Observed In		2e-05
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		2e-05
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-05
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		2e-05
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		2e-05
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-05
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-05
1ldb_A	317	Structure Determination And Refinement Of Bacillus		3e-05
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		3e-05
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		7e-05
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		7e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		8e-05
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		8e-05
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		1e-04
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		1e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		1e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		2e-04
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		4e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		5e-04
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		6e-04
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		9e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  577 bits (1487), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 284/331 (85%), Positives = 299/331 (90%)
Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84
Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144
Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEX 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE 
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204
Query: 181 XXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
                          HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264
Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           GSATLSMAYAAVKFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ 
Sbjct: 265 GSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYS 324
Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           LGPLNEYERIGLEKAKKELAGSI+KG+SF +
Sbjct: 325 LGPLNEYERIGLEKAKKELAGSIEKGVSFIR 355

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  559 bits (1441), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 276/319 (86%), Positives = 289/319 (90%)
Query: 13  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 72
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXX 192
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE             
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 193 XXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 252
              HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240
Query: 253 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL 312
           KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYERIGL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300
Query: 313 EKAKKELAGSIQKGISFSK 331
           EKAKKELAGSI+KG+SF +
Sbjct: 301 EKAKKELAGSIEKGVSFIR 319

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  339 bits (869), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 219/310 (70%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
           + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301
Query: 322 SIQKGISFSK 331
           SI+KG  F K
Sbjct: 302 SIKKGEEFVK 311

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 217/310 (70%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
           ST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 269
Query: 262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
           + G  GVVEC+FV SQ TE  +F++ + LG++G E+   +G ++ +E   +  A  EL  
Sbjct: 270 MNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKA 329
Query: 322 SIQKGISFSK 331
           SI+KG  F K
Sbjct: 330 SIKKGEDFVK 339

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 203/314 (64%), Gaps = 4/314 (1%)
Query: 21  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 78
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  E-DATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 258
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 318
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 319 LAGSIQKGISFSKK 332
           L   I  G  F  K
Sbjct: 299 LKKDIALGEEFVNK 312

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/314 (52%), Positives = 203/314 (64%), Gaps = 4/314 (1%)
Query: 21  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 78
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  E-DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 258
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 318
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 319 LAGSIQKGISFSKK 332
           L   I  G  F  K
Sbjct: 299 LKKDIALGQEFVNK 312

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  291 bits (746), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/314 (52%), Positives = 202/314 (64%), Gaps = 4/314 (1%)
Query: 21  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 78
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  E-DATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           PVN+TV IAAEV KKAG YD  KL GVT LD++ +NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 258
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + 
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL 238
Query: 259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 318
           +R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     
Sbjct: 239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDT 298
Query: 319 LAGSIQKGISFSKK 332
           L   I  G  F  K
Sbjct: 299 LKKDIALGQEFVNK 312

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  290 bits (742), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 163/312 (52%), Positives = 206/312 (66%), Gaps = 5/312 (1%)
Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPG  R DLFN+NAGIV++L E IA  CPNA + +I+NP
Sbjct: 65  DPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGV 199
           VN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TFVAE                H+GV
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259
           TILPLLSQV+    F+ EE   LT RIQN GTEVVEAKAG GSATLS   AA +F  A +
Sbjct: 184 TILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
           + L+G+  V+E A+V        FFA  V+LG++G EEI   G L+++E+  L+   + L
Sbjct: 243 KALQGEE-VIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETL 301
Query: 320 AGSIQKGISFSK 331
              IQ G+ F K
Sbjct: 302 NSDIQIGVDFVK 313

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 149/325 (45%), Gaps = 43/325 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VRG 75
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T  +      VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                 LEN+    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CPNA V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
           I+NP++  V     + K +G  D K +    +LD  R  TF+A+                
Sbjct: 121 ITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGG 177
Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
           H G T +PL          L Q+       QE  + + +R ++GG E+V A    GSA  
Sbjct: 178 H-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYY 235
Query: 246 SMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLN 305
           + A A ++ A++ L+  +    ++ C             A+KV+ G  G +E   +G   
Sbjct: 236 APAAAGIQXAESFLKDKK---XILPC-------------AAKVKAGXYGLDEDLFVGVPT 279
Query: 306 EYERIGLEKAKKELAGSIQKGISFS 330
           E    G+   + E++   ++ +  S
Sbjct: 280 EISANGVRPIEVEISDKEREQLQVS 304

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 34/244 (13%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP++    +A  
Sbjct: 71  DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA-- 128
Query: 150 VFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXH--AGVTILPLL 205
            + ++G   PK +++G+  +LD  R  +F+A                 H  A V ++   
Sbjct: 129 -WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYT 185
Query: 206 SQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA------ 257
           +    P S     E  + L  R +NGG E+VE     GSA  + A + V+  ++      
Sbjct: 186 TVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPASSVVEMVESIVLDRK 244
Query: 258 ----CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE 313
               C  GL G  G+           +  F    V+LGR G E+I+++  L++ +   L+
Sbjct: 245 RVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQIYEIN-LDQADLDLLQ 292
Query: 314 KAKK 317
           K+ K
Sbjct: 293 KSAK 296

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 145/322 (45%), Gaps = 51/322 (15%)
Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
            K+ ++GA G +G   A  +    L   L L DVV        +   +TG V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLF--- 54
Query: 81  QLENALTGM---------DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131
             +  +TG          D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N 
Sbjct: 55  --DTKITGSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP 112
Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
            + ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A           
Sbjct: 113 IIIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDIN 167
Query: 190 XXXXXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
                 H  A V ++   +    P S     E  + L  R +NGG E+VE     GSA  
Sbjct: 168 ACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFY 226
Query: 246 SMAYAAVKFADA----------CLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
           + A + V+  ++          C  GL G  G+           +  F    V+LGR G 
Sbjct: 227 APASSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGV 275
Query: 296 EEIFQLGPLNEYERIGLEKAKK 317
           E+I+++  L++ +   L+K+ K
Sbjct: 276 EQIYEIN-LDQADLDLLQKSAK 296

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 20/235 (8%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + +++NPV++   +   
Sbjct: 80  DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 150 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 207
           VFK+AG +  ++++G + +LD  R  TF+A+                H G  ++PL+   
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 208 ----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 263
               +       +E  E +  R + GG E+V    G GSA  + A + V+  +A L+  R
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSAYYAPAASLVEMTEAILKDQR 253
Query: 264 G---DAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 315
                   +E  +  S +    +    V LG  G E+I +L  L + E+  L+++
Sbjct: 254 RVLPAIAYLEGEYGYSDL----YLGVPVILGGNGIEKIIELELLAD-EKEALDRS 303

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 39/327 (11%)
Query: 16  GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTGAVV 73
           G  A  K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     + V
Sbjct: 3   GSMARNKIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPV 57
Query: 74  RGFLGQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
            GF  +    N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P 
Sbjct: 58  DGFDAKFTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPE 117
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
           A V  I+NP+++ V       +K       K++G+  +LD  R   F++E          
Sbjct: 118 AFVICITNPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVT 173
Query: 190 XXXXXXHAGVTI----------LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
                 H    +          +PL   VK   + +Q++ + +  R ++GG E+V     
Sbjct: 174 VFVLGGHGDSMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV-GLLK 231
Query: 240 AGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT-----ELPFFASKVRLGRQG 294
            GSA  + A +A++ A++ L+  +          VA+Q++     +  +      +G  G
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKK------RVLPVAAQLSGQYGVKDMYVGVPTVIGANG 285
Query: 295 AEEIFQLGPLNEYERIGLEKAKKELAG 321
            E I ++  L++ E+   +K+   +AG
Sbjct: 286 VERIIEI-DLDKDEKAQFDKSVASVAG 311

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 18/236 (7%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+V+I AG+PRKPGMTR+DL ++NAGIVR +   I +   N  + ++SNP++    +A  
Sbjct: 71  DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIVVVSNPLDIMTHVA-- 128
Query: 150 VFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXH--AGVTILPLL 205
            ++K+G   PK +++G+  +LD  R  +F+A                 H  A V ++   
Sbjct: 129 -WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVLGGHGDAMVPVVKYT 185
Query: 206 SQVKPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 263
           +    P +   + E    L  R + GG E+V      GSA  S A + V+  ++ +   +
Sbjct: 186 TVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPATSVVEMVESIVLDRK 244
Query: 264 GDAGVVECA--FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK 317
               V+ CA         +  F    V+LG+ G E I+++  L++ +   L+K+ K
Sbjct: 245 ---RVLTCAVSLDGQYGIDGTFVGVPVKLGKNGVEHIYEI-KLDQSDLDLLQKSAK 296

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH----MDTGAVVRG 75
           K++I+GA G IG  +A+L+    L  V +++D++     G   D++H    + + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                 L+N+    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR 172
           I+NP+++ V      FK+       K+ G++ +LD  R
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSAR 163

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 264
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 265 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 322
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 323 IQ 324
           + 
Sbjct: 303 LD 304

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 264
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 265 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 322
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 323 IQ 324
           + 
Sbjct: 303 LD 304

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 264
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 265 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 322
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 323 IQ 324
           + 
Sbjct: 303 LD 304

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 114/242 (47%), Gaps = 16/242 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRG 264
           +   P   F   +    +  R + GG E+V      GSA  + A A  +  +A L+  + 
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKKR 246
Query: 265 DAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS 322
              V   A++  Q  + ++ +F   V LG  G E+I +L PLNE E   L  + K +  +
Sbjct: 247 VMPV--AAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRAT 302
Query: 323 IQ 324
           + 
Sbjct: 303 LD 304

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 75
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 124 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 190 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 180 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 75
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 190 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 75
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMXE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 190 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 194 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 244 TLSMAYAAVKFADACLR 260
             + A +A+  A A L+
Sbjct: 242 YYAPALSAITMAQAFLK 258

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 113/257 (43%), Gaps = 26/257 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 194 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241
Query: 244 TLSMAYAAVKFADACLR 260
             + A +A+  A A L+
Sbjct: 242 YYAPALSAITMAQAFLK 258

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +    F K    DP+K+ G  T+LD  R  T +A+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQ 155

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 177
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 233
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 290
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 291 L-QLNSEEKAKFDEAIAE 307

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 177
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 178 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 233
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 234 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 290
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 291 L-QLNSEEKAKFDEAIAE 307

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 129/321 (40%), Gaps = 41/321 (12%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTGAVVRGFLG- 78
           K+ I+GAAG IG  +A    +  L   L LYD   V   GV  +I H        GF G 
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-------GFEGL 62
Query: 79  ----QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-V 133
                  ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V
Sbjct: 63  NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHV 122
Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXX 193
            +I NP +    I   V        P ++  +  LD  R  + +A+              
Sbjct: 123 IIIFNPAD----ITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRT 178
Query: 194 XXHAGVTILPLLSQVK---PPCS-------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
               G  +    S  K    P +        T E+   L  R+  GG  +++ +    S+
Sbjct: 179 YGGHGEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSS 236
Query: 244 TLSMAYAAVKFADACLRG--LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAE--EIF 299
             S +Y +++   A + G   R  AG     +V     E    A +  + + G +  +I 
Sbjct: 237 FQSPSYVSIEMIRAAMGGEAFRWPAG----CYVNVPGFEHIMMAMETTITKDGVKHSDIN 292
Query: 300 QLGPLNEYERIGLEKAKKELA 320
           QLG  NE ER  L+++   LA
Sbjct: 293 QLG--NEAERAALKESYSHLA 311

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 35/309 (11%)
Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTGAVVRGFLGQ 79
           + ILGA G +G   A+++ +     +L +      P G   D++H   + G  +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
              E+ + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           V++   +   ++KK G +  ++++G + +LD  R   ++++                H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 199 VTI-LPLLSQV-KPPCS--FTQEETEYLTNRIQNGGTEVVEAKAGAG----SATLSMAYA 250
               +P LS V   P     ++EE E + +   N G ++ E +  +     +A L +   
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTVE 234
Query: 251 AVKFADACLR----GLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNE 306
           A+K     +      L+G+ G  +       V E+P       +G+ G E I +L PL E
Sbjct: 235 AIKRDSKRIYPYSLYLQGEYGYNDI------VAEVPAV-----IGKSGIERIIEL-PLTE 282
Query: 307 YERIGLEKA 315
            E+   ++A
Sbjct: 283 DEKRKFDEA 291

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 229 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 285
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
             VRLG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 264 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 229 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 285
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
             VRLG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 119/280 (42%), Gaps = 28/280 (10%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 229 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 285
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGRVLPASVKLEGEFGHEDTAFG 262
Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
             VRLG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 263 VPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 141/315 (44%), Gaps = 35/315 (11%)
Query: 25  ILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQPQL 82
           +L  +G IG  +A L+    L  V+ ++DVV N P G   D SH +  A     +     
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNS 65
Query: 83  ENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
            + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + +++
Sbjct: 66  YDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVT 125
Query: 138 NPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
           NPV+  V +   +F+ +G   PK K++G+  +LD  R   ++++                
Sbjct: 126 NPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGA 180
Query: 196 HAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
           H    +L          PL   +      T EE E + +R  N   E+V   A   S  +
Sbjct: 181 HGNKMVLLKRYITVGGIPLQEFINNK-KITDEEVEGIFDRTVNTALEIVNLLA---SPYV 236
Query: 246 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQLGP 303
           + A A ++ A++ L+ ++    V+ C+  +  Q      F  + + +G  G E++ +L  
Sbjct: 237 APAAAIIEMAESYLKDIK---KVLVCSTLLEGQYGHSNIFGGTPLVIGGTGVEQVIEL-Q 292
Query: 304 LNEYERIGLEKAKKE 318
           LN  E+   ++A  E
Sbjct: 293 LNAEEKTKFDEAVAE 307

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 150 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPL---- 204
               A  +   +++G+  +LD  R  +F+AE                H G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 205 -LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLR 263
            +  +  P        E +  R +  G E+V+      SA  +   AA +  +A    L+
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAAAAEMTEAI---LK 240
Query: 264 GDAGVVECAFVASQVTELP--FFASKVRLGRQGAEEIFQL 301
            +  ++ CA        L   F    V+LG  G EE+ ++
Sbjct: 241 DNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV 280

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 133/324 (41%), Gaps = 46/324 (14%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H         F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG------LPFMGQ 61
Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXX 194
           +SNPV+    I   + +K       K++G  T+LD +R    ++E               
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177
Query: 195 XHAGVTILPLLSQVK------------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
            H G + LPL S               P C+FT+E+ + +   ++  G  +++ K   G+
Sbjct: 178 EH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA 233
Query: 243 ATLSMAYAAVKFADACLRG---LRGDAGVVECAF-VASQVTELPFFASKVRLGRQGAEEI 298
               +A +     +  L+    +R    V+   + +      LP       +  +G +E+
Sbjct: 234 TYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSI-----VNSEGVQEV 288
Query: 299 FQLGPLNEYE---RIGLEKAKKEL 319
            Q     E E   R   E+ KK L
Sbjct: 289 LQFNLTPEEEEALRFSAEQVKKVL 312

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 20/234 (8%)
Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADISHMDTGAVVRGF 76
            KV I+GA+G +G   A+L+   P +  L L    + +    G+  DI     G      
Sbjct: 1   MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDAN 60
Query: 77  LGQPQLEN--ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           +     EN   +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C +  + 
Sbjct: 61  IYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIF 119
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           +I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+              
Sbjct: 120 VITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRII 175
Query: 194 XXHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
             H G +++PLLS        ++    F +   + +   ++  G +++  K G+
Sbjct: 176 GEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTGAVVRGFLG 78
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHA 197
           P++    +    F+K       K+ G+  +LD  R  TF+A+                H 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 198 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
           G  ++P  S V     P  SF      TQE+ + +    +    EV +
Sbjct: 178 GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTGAVVRGFLG 78
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHA 197
           P++    +    F+K       K+ G+  +LD  R  TF+A+                H 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 198 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
           G  ++P  S V     P  SF      TQE+ + +    +    EV +
Sbjct: 178 GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 142/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      +  E E + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---S 234
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + 
Sbjct: 64  SNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      T +E + + +R  N   E+V   A   S
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNK-KITDQELDAIFDRTINTALEIVNLHA---S 234
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFA-SKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ +R LR    V+ C+  +  Q      FA + + +G  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYIRDLR---KVLICSTLLEGQYGHKDIFAGTPLVIGGNGVEQVIE 291
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNADEKKKFDEAVAE 308

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 117/280 (41%), Gaps = 28/280 (10%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 229 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 285
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 210 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 262
Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
             V LG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 263 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 117/280 (41%), Gaps = 28/280 (10%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 229 GGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT---ELPFFA 285
              +V+E K   G+     A       +A L     D G V  A V  +     E   F 
Sbjct: 211 SAMDVIERK---GATEWGPARGVAHMVEAILH----DTGEVLPASVKLEGEFGHEDTAFG 263
Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
             V LG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 264 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 302

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 36/318 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++             
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNAHI 178
Query: 193 XXXHAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
              H    +L          PL   +      +  E E + +R  N   E+V   A   +
Sbjct: 179 VGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA---A 234
Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFF-ASKVRLGRQGAEEIFQ 300
             ++ A A ++ A++ L+ L+    V+ C+  +  Q      F  + V LG  G E++ +
Sbjct: 235 PYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIE 291
Query: 301 LGPLNEYERIGLEKAKKE 318
           L  LN  E+   ++A  E
Sbjct: 292 L-QLNSEEKAKFDEAIAE 308

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 16/147 (10%)
Query: 29  AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL-----E 83
           AG +G   A    +N  V  + L D+     V      MD      G    P++      
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG---EAMDLAHAAAGIDKYPKIVGGADY 64
Query: 84  NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 143
           + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP++  
Sbjct: 65  SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVM 124
Query: 144 VPIAA--------EVFKKAGTYDPKKL 162
             I          EVF      D ++L
Sbjct: 125 TYIMWKESGKPRNEVFGMGNQLDSQRL 151

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 9   QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD 68
           +A+ +  G  +  KVA+ GAAG IG  L  L+    L+           P    ++  +D
Sbjct: 13  EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLG----------PTTPVELRLLD 62
Query: 69  TGAVVRGFLG-QPQLEN-----------------ALTGMDLVIIPAGVPRKPGMTRDDLF 110
               ++   G + +LE+                 A  G+ + I+    PRK GM R DL 
Sbjct: 63  IEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLL 122
Query: 111 NINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGVTML 168
            +NA I +   E IA     +  V ++ NP N+   I   + K A G  +P+ +  +T L
Sbjct: 123 EMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRL 179
Query: 169 DVVRANTFVA 178
           D  RA + +A
Sbjct: 180 DHNRALSLLA 189

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG P++PG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 150 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 207
              K   +   +++G  T LD  R    +AE                H G T  P+ S  
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 191
Query: 208 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 257
                     VK      +++   +   +++   E+++ K   G+    +A A  + + A
Sbjct: 192 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 248
Query: 258 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 315
            L     +A +    ++  Q  + +L +  +   + R G + I ++ PL ++E   ++K+
Sbjct: 249 ILND--ENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 304
Query: 316 KKEL 319
             +L
Sbjct: 305 ASQL 308

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 150 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 207
              K   +   +++G  T LD  R    +AE                H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 208 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 257
                     VK      +++   +   +++   E+++ K   G+    +A A  + + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKA 249
Query: 258 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 315
            L     +A +    ++  Q  + ++ +  +   + R G + I ++ PL ++E   ++K+
Sbjct: 250 ILND--ENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 305
Query: 316 KKEL 319
             +L
Sbjct: 306 ASQL 309

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/244 (22%), Positives = 104/244 (42%), Gaps = 26/244 (10%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 150 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 207
              K   +   +++G  T LD  R    +A+                H G T  P+ S  
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHA 192
Query: 208 ----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA 257
                     VK      +++   +   ++N   E+++ K   G+    +A A  + + A
Sbjct: 193 NIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GATFYGIATALARISKA 249
Query: 258 CLRGLRGDAGVVECAFVASQ--VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA 315
            L     +A +    ++  Q  + ++ +  +   + R G + I ++ PL ++E   ++K+
Sbjct: 250 ILND--ENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTDHEEESMQKS 305
Query: 316 KKEL 319
             +L
Sbjct: 306 ASQL 309

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 71/326 (21%), Positives = 128/326 (39%), Gaps = 33/326 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           K+ ++G  G +G   A+ + +  L   L L D  +T  +  +   +  G++   FL  P+
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDA-DTDKLRGEALDLQHGSL---FLSTPK 75
Query: 82  L-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
           +      N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + ++
Sbjct: 76  IVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVV 135
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
           +NPV+    I   V  K   +   +++G    LD  R    + E                
Sbjct: 136 TNPVD----ILTYVVWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLGE 191
Query: 196 HAGVTILPLLSQVK---------PPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGSA 243
           H G + +P+ S V           P   T +  ++  N   ++  GG EV++ K   G  
Sbjct: 192 H-GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLDMK---GYT 247
Query: 244 TLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 303
           + ++  +    A + L+ L+    V         + E  F +    LG  G  +  ++  
Sbjct: 248 SWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNM 307
Query: 304 LNEYERIGLEKAKKELAGSIQKGISF 329
             E E  GL K   +   ++QK +  
Sbjct: 308 TAEEE--GLLKKSADTLWNMQKNLEL 331

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 83  ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142
            + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + + SNPV+ 
Sbjct: 62  HSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDL 121
Query: 143 TVPIAAEV 150
              +A ++
Sbjct: 122 LTDLATQL 129

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 19  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 67
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 68  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 128 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 19  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 67
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 68  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 128 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NPV+    IA  
Sbjct: 77  DMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATH 132
Query: 150 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           V +K       ++ G  T LD  R    +A+
Sbjct: 133 VAQKLTGLPENQIFGSGTNLDSARLRFLIAQ 163

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 136/332 (40%), Gaps = 45/332 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQH---GSL---FLRT 73
Query: 80  PQLENALTGMD--------LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131
           P++   ++G D        LVII AG  ++ G +R +L   N  I + +   + K  P+ 
Sbjct: 74  PKI---VSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHC 130
Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXX 190
            + ++SNPV+    I   V  K   +   +++G    LD  R    + E           
Sbjct: 131 KLLVVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCHG 186
Query: 191 XXXXXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
                H             AGV++  L  ++       +E+ + +  ++ +   EV++ K
Sbjct: 187 WILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDAD--KEQWKQVHKQVVDSAYEVIKLK 244
Query: 238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEE 297
              G  T ++  +    A++ ++ LR    +         + E  F +    LG+ G  +
Sbjct: 245 ---GYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGISD 301
Query: 298 IFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
           + ++  L   E   L+K+   L G IQK + F
Sbjct: 302 VVKV-TLTSEEEAHLKKSADTLWG-IQKELQF 331

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 18/173 (10%)
Query: 19  AGFKVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHM 67
           A  +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++   
Sbjct: 3   APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC 60
Query: 68  DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127
               ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+ 
Sbjct: 61  -AFPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEV 119
Query: 128 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
              +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 120 AKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 37/328 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 80  PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 194 XXHAGVTILPLLS----------QVKPPCSFTQEETEY--LTNRIQNGGTEVVEAKAGAG 241
             H G + +P+ S           + P     +++ ++  +  ++     EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLK---G 245
Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
             + ++  +    A++ ++ LR    V         + +  F +    LG+ G  ++ ++
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 302 GPLNEYERIGLEKAKKELAGSIQKGISF 329
             L   E   L+K+   L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 133/328 (40%), Gaps = 37/328 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 80  PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 194 XXHAGVTILPLLS----------QVKPPCSFTQEETEY--LTNRIQNGGTEVVEAKAGAG 241
             H G + +P+ S           + P     +++ ++  +  ++     EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKLK---G 245
Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
             + ++  +    A++ ++ LR    V         + +  F +    LG+ G  ++ ++
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISDLVKV 305
Query: 302 GPLNEYERIGLEKAKKELAGSIQKGISF 329
             L   E   L+K+   L G IQK + F
Sbjct: 306 -TLTSEEEARLKKSADTLWG-IQKELQF 331

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 207
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 208 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA--- 255
                    V+      Q++ E +   +++   +++E K GA    ++M  A V  A   
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGLARVTRAILH 250
Query: 256 --------DACLRGLRGDAGV 268
                    A L GL G+  V
Sbjct: 251 NENAILTVSAYLDGLYGERDV 271

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 207
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 208 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFA--- 255
                    V+      Q++ E +   +++   +++E K GA    ++M  A V  A   
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGLARVTRAILH 250
Query: 256 --------DACLRGLRGDAGV 268
                    A L GL G+  V
Sbjct: 251 NENAILTVSAYLDGLYGERDV 271

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA--V 72
           +VA+ GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA 131
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+    + 
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
            V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 73/328 (22%), Positives = 132/328 (40%), Gaps = 37/328 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQH---GSL---FLRT 74
Query: 80  PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++      N      LV+I AG  ++ G +R +L   N  I + +   I K  PN  + 
Sbjct: 75  PKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLL 134
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 135 VVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWIL 190
Query: 194 XXHAGVTILPLLSQVK---------PPCSFTQEETEY---LTNRIQNGGTEVVEAKAGAG 241
             H G + +P+ S V           P   T  + E+   +   + +   EV++ K   G
Sbjct: 191 GEH-GDSSVPVWSGVNVAGVSLKNLHPELGTDADKEHWKAVHKEVVDSAYEVIKLK---G 246
Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQL 301
             + ++  +    A++ ++ LR    +         + E  F +    LG+ G  ++ ++
Sbjct: 247 YTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGISDVVKV 306
Query: 302 GPLNEYERIGLEKAKKELAGSIQKGISF 329
             L   E   L+K+   L G IQK + F
Sbjct: 307 -TLTPEEEAHLKKSADTLWG-IQKELQF 332

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 133/329 (40%), Gaps = 39/329 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73
Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 194 XXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
             H             AGV++  L  Q+       +E+ + +  ++ +   EV++ K   
Sbjct: 190 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKLK--- 244
Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           G  + ++  +    A++ ++ LR    +         + E  F +    LG+ G  ++ +
Sbjct: 245 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 304
Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISF 329
           +  L   E   L+K+   L G IQK + F
Sbjct: 305 V-TLTPDEEARLKKSADTLWG-IQKELQF 331

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 133/329 (40%), Gaps = 39/329 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 74
Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 75  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 134
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E              
Sbjct: 135 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 190
Query: 194 XXH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
             H             AGV++  L  Q+       +E+ + +  ++ +   EV++ K   
Sbjct: 191 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKLK--- 245
Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           G  + ++  +    A++ ++ LR    +         + E  F +    LG+ G  ++ +
Sbjct: 246 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 305
Query: 301 LGPLNEYERIGLEKAKKELAGSIQKGISF 329
           +  L   E   L+K+   L G IQK + F
Sbjct: 306 V-TLTPDEEARLKKSADTLWG-IQKELQF 332

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   +  +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YALSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 82  LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 196
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH 178
Query: 197 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 246 SMAYAAV 252
           +M+ A +
Sbjct: 237 AMSLARI 243

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 101/247 (40%), Gaps = 26/247 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 82  LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 196
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
Query: 197 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 246 SMAYAAV 252
           +M+ A +
Sbjct: 237 AMSLARI 243

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 99  PRKPGMTRDDLFNINAGIVRTLCEGI-AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 157
           PR PGM R DL +IN  I     + + A   PN  V ++ NP N+   I     K A   
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 158 DPKKLLGVTMLDVVRA 173
            PK    +T LD  RA
Sbjct: 186 PPKNFHALTRLDENRA 201

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 99/251 (39%), Gaps = 21/251 (8%)
Query: 91  LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 150
           +V++ AG  ++ G +R +L   N  I + +   I K  PN  + ++SNPV+    +A   
Sbjct: 91  VVVVTAGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA--- 147
Query: 151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKP 210
           +K +G    + +   T LD  R    + E                H G + +P+ S V  
Sbjct: 148 WKLSGLPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEH-GDSSVPVWSGVNV 206
Query: 211 PCSFTQ------------EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 258
              F Q            E+ + +   + +   EV++ K   G  + ++  +A     + 
Sbjct: 207 AGVFLQGLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKLK---GYTSWAIGMSAADLCQSI 263
Query: 259 LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE 318
           L+ LR    V         V E  F +    LG  G  ++  +  L   E   L K+ + 
Sbjct: 264 LKNLRKCHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHM-TLKSDEEKQLVKSAET 322
Query: 319 LAGSIQKGISF 329
           L G +QK ++ 
Sbjct: 323 LWG-VQKDLTL 332

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	0.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-175
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-169
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-50
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	4e-43
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	7e-41
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	2e-40
3tl2_A	315	Malate dehydrogenase; center for structural genomi	2e-40
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	4e-40
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	5e-40
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	7e-40
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	3e-39
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	5e-39
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	3e-38
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	5e-38
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	6e-38
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	8e-38
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-37
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	4e-37
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	6e-37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	7e-37
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	1e-36
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	2e-36
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	2e-36
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	2e-36
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-36
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-35
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	2e-35
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	2e-34
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	8e-34
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-33
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	3e-33
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	4e-33
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	2e-32
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	2e-31
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	7e-31
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	3e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	2e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	3e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  504 bits (1301), Expect = 0.0
 Identities = 292/320 (91%), Positives = 305/320 (95%)

Query: 13  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 72
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 192
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 193 VGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAV 252
           VGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSMAYAAV
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAV 240

Query: 253 KFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL 312
           KFADACLRGLRGDAGV+ECAFV+SQVTELPFFASKVRLGR G EE++ LGPLNEYERIGL
Sbjct: 241 KFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGL 300

Query: 313 EKAKKELAGSIQKGISFSKK 332
           EKAKKELAGSI+KG+SF + 
Sbjct: 301 EKAKKELAGSIEKGVSFIRS 320

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  485 bits (1252), Expect = e-175
 Identities = 180/310 (58%), Positives = 231/310 (74%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 261
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 262 LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG 321
           + G  GVVEC+FV SQ T+ P+F++ + LG++G E+   +G ++ +E   + +A  EL  
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA 301

Query: 322 SIQKGISFSK 331
           SI+KG  F K
Sbjct: 302 SIKKGEEFVK 311

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  472 bits (1216), Expect = e-169
 Identities = 173/313 (55%), Positives = 214/313 (68%), Gaps = 4/313 (1%)

Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
           VN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM  AA +F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
           R L+G+ GVVECA+V        FF+  + LG+ G EE   +G L+ +E+  LE     L
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299

Query: 320 AGSIQKGISFSKK 332
              I  G  F  K
Sbjct: 300 KKDIALGEEFVNK 312

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  169 bits (431), Expect = 3e-50
 Identities = 78/317 (24%), Positives = 124/317 (39%), Gaps = 25/317 (7%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ I+GAAG IG  +A    +  L   L LYD       GV  +I     G         
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEI--RHCGFEGLNLTFT 67

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISN 138
             ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197
           P + T  +       +G   P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 198 GVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           G  +             L+ +      T E+   L  R+  GG  +++ +    S+  S 
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQSP 240

Query: 248 AYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEY 307
           +Y +++   A + G           +V     E    A +  + + G +        NE 
Sbjct: 241 SYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNEA 298

Query: 308 ERIGLEKAKKELAGSIQ 324
           ER  L+++   LA    
Sbjct: 299 ERAALKESYSHLAKLRD 315

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  149 bits (380), Expect = 4e-43
 Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 50/327 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTGAVVRGFL 77
           KV+++GAAG +G      + +  +   +   D+ +    T    AD +H         + 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55

Query: 78  GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 133
              ++         G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +   
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPV 192
              SNPV+    +      +AG    ++++G    LD  R    ++E      ++V+  +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 193 VGGHAGVTILPLLSQV----KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248
           +G H G   +P+ S+V      P  F+ +E E L   +Q    +V+E K   G+     A
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDP-EFSGDEKEQLLGDLQESAMDVIERK---GATEWGPA 226

Query: 249 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 298
                  +A L            L G+ G  +             F   V LG  G EEI
Sbjct: 227 RGVAHMVEAILHDTGEVLPASVKLEGEFGHEDT-----------AFGVPVSLGSNGVEEI 275

Query: 299 FQLGPLNEYERIGLEKAKKELAGSIQK 325
            +   L++YE+  +  A ++L+    K
Sbjct: 276 VEW-DLDDYEQDLMADAAEKLSDQYDK 301

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  144 bits (365), Expect = 7e-41
 Identities = 73/325 (22%), Positives = 138/325 (42%), Gaps = 38/325 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGF- 76
           KV I+GA+G +G   A+L+   P +  L L    +      G+  DI             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSD 58

Query: 77  ----LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
               +   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    
Sbjct: 59  ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK- 117

Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP 191
           + +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   +V   
Sbjct: 118 IFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTR 173

Query: 192 VVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
           ++G H G +++PLLS        ++    F +   + +   ++  G +++  K   G + 
Sbjct: 174 IIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSE 229

Query: 245 LSMAYAAVKFADACLRGLRGDAGVVE--CAFVASQVTELP--FFASKVRLGRQGAEEIFQ 300
              A A +      +     +   +    A+V  +   +        V++GR G EE+  
Sbjct: 230 FGPAAAILNVVRCIVN----NEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVS 285

Query: 301 LGPLNEYERIGLEKAKKELAGSIQK 325
           +  L++ E I   K+ + +    ++
Sbjct: 286 I-ELDKDEIIAFRKSAEIIKKYCEE 309

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  143 bits (362), Expect = 2e-40
 Identities = 79/325 (24%), Positives = 143/325 (44%), Gaps = 44/325 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++GA G +G  +A  +    +   + + D+ +    G   D+      + + GF  +
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE---SSPIHGFDTR 57

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N        D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ ++
Sbjct: 58  VTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++    +   V  +A  +   +++G+  +LD  R  +F+AE L +  RDV   ++GG
Sbjct: 118 ANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
           H G T++PL         P          E +  R +  G E+V+      SA  +   A
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGAA 230

Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
           A +  +A L+             G+ G+ +            F    V+LG  G EE+ +
Sbjct: 231 AAEMTEAILKDNKRILPCAAYCDGEYGLDDL-----------FIGVPVKLGAGGVEEVIE 279

Query: 301 LGPLNEYERIGLEKAKKELAGSIQK 325
           +  L+  E+  L+ +   +  ++  
Sbjct: 280 V-DLDADEKAQLKTSAGHVHSNLDD 303

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  142 bits (361), Expect = 2e-40
 Identities = 89/327 (27%), Positives = 150/327 (45%), Gaps = 46/327 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDTGAVVRGFL 77
           KV+++GA G  G   A L+    L  V+ L D+      T     D+      + V+GF 
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLE---ASPVQGFD 64

Query: 78  GQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                 +        D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + 
Sbjct: 65  ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           +++NPV+           K   +  ++++G   +LD  R  TF+A+ L L  +D+   V+
Sbjct: 125 VLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180

Query: 194 GGHAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248
           GGH G  ++PL+        P  +   +E  E +  R + GG E+V    G GSA  + A
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSAYYAPA 238

Query: 249 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 298
            + V+  +A L+           L G+ G  +            +    V LG  G E+I
Sbjct: 239 ASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-----------YLGVPVILGGNGIEKI 287

Query: 299 FQLGPLNEYERIGLEKAKKELAGSIQK 325
            +L  L   E+  L+++ + +   ++ 
Sbjct: 288 IEL-ELLADEKEALDRSVESVRNVMKV 313

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  142 bits (360), Expect = 4e-40
 Identities = 91/325 (28%), Positives = 151/325 (46%), Gaps = 43/325 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++GA G +G   A  +    L   L L DVV     G   D+        V  F  +
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE---SGPVGLFDTK 57

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N        D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++
Sbjct: 58  VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           SNP++    I   V         ++++G+  +LD  R  +F+A  LG+  +D++  V+GG
Sbjct: 118 SNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
           H G  ++P++        P       E  + L  R +NGG E+VE     GSA  + A +
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASS 231

Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
            V+  ++ +            L G  G+ +          +P     V+LGR G E+I++
Sbjct: 232 VVEMVESIVLDRKRVLPCAVGLEGQYGIDKTFV------GVP-----VKLGRNGVEQIYE 280

Query: 301 LGPLNEYERIGLEKAKKELAGSIQK 325
           +  L++ +   L+K+ K +  + + 
Sbjct: 281 I-NLDQADLDLLQKSAKIVDENCKM 304

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  141 bits (358), Expect = 5e-40
 Identities = 74/327 (22%), Positives = 134/327 (40%), Gaps = 51/327 (15%)

Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQP 80
           + ILGA G +G   A+++ +     +L L         G   D++H    A   G   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAH---AAAELGVDIRI 56

Query: 81  QLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
              N    + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +
Sbjct: 57  SGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 196
           NPV+        V  K   +  ++++G   +LD  R   ++++ LG+  + V+  V+G H
Sbjct: 117 NPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172

Query: 197 AGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGA-----GSATLS 246
            G  + P+         P     ++EE E + +   N G ++ E +  +      +  + 
Sbjct: 173 -GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVL 231

Query: 247 MAYAAVKFAD--------ACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEI 298
              A  +  D          L+G  G   +                     +G+ G E I
Sbjct: 232 TVEAIKR--DSKRIYPYSLYLQGEYGYNDI--------------VAEVPAVIGKSGIERI 275

Query: 299 FQLGPLNEYERIGLEKAKKELAGSIQK 325
            +L PL E E+   ++A + +   ++ 
Sbjct: 276 IEL-PLTEDEKRKFDEAVQAVKKLVET 301

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  141 bits (358), Expect = 7e-40
 Identities = 85/325 (26%), Positives = 142/325 (43%), Gaps = 44/325 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K++I+GA G +G   A  +    L  ++ L D+V     G   D+      + + GF  +
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYE---ASPIEGFDVR 58

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N        D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + ++
Sbjct: 59  VTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 118

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++        +  +   +  ++++G   +LD  R  TF+A   G+   DV   ++GG
Sbjct: 119 NNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGG 174

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYA 250
           H G  ++PL         P   F   +    +  R + GG E+V      GSA  + A A
Sbjct: 175 H-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAA 232

Query: 251 AVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQ 300
             +  +A L+           L G  G+ +            +F   V LG  G E+I +
Sbjct: 233 TAQMVEAVLKDKKRVMPVAAYLTGQYGLNDI-----------YFGVPVILGAGGVEKILE 281

Query: 301 LGPLNEYERIGLEKAKKELAGSIQK 325
           L PLNE E   L  + K +  ++  
Sbjct: 282 L-PLNEEEMALLNASAKAVRATLDT 305

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  140 bits (355), Expect = 3e-39
 Identities = 98/330 (29%), Positives = 148/330 (44%), Gaps = 49/330 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K++I+GA G IG  +A+L+    L  V  ++D++     G   D++H      + G   +
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNH---CMALIGSPAK 70

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
              EN    L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  I
Sbjct: 71  IFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++         FK+       K+ G+  +LD  R    ++  LG+ P DV   VVGG
Sbjct: 131 TNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
           H G  ++PL          LS        T  +   +  +   GG E+VE     GSA  
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFY 244

Query: 246 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
           + A +AV  A A L+           L G   V              F    V +G+ G 
Sbjct: 245 APAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL-----------FVGVPVVIGKNGI 293

Query: 296 EEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           E++  +  L++ E+    K+ + +   +Q 
Sbjct: 294 EDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  139 bits (353), Expect = 5e-39
 Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 49/330 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H     V+ G   +
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITH---SMVMFGSTSK 60

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               +    ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I
Sbjct: 61  VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICI 120

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++    +    F+K       K+ G+  +LD  R  TF+A+  G++  DV   V+GG
Sbjct: 121 TNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
           H G  ++P           LS        TQE+ + +    +    EV +     G+A  
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYF 234

Query: 246 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
           + A AAVK A+A L+                GV            +P       +G+ G 
Sbjct: 235 APAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGIYM------GVP-----TIIGKNGV 283

Query: 296 EEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           E+I +L  L   E+  L ++  E+    + 
Sbjct: 284 EDILEL-DLTPLEQKLLGESINEVNTISKV 312

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  137 bits (348), Expect = 3e-38
 Identities = 94/330 (28%), Positives = 155/330 (46%), Gaps = 49/330 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++          +K       K++G+  +LD  R   F++E   +   DV V V+GG
Sbjct: 124 TNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
           H G +++PL          L  +      +Q++ + +  R ++GG E+V      GSA  
Sbjct: 180 H-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFY 237

Query: 246 SMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGA 295
           + A +A++ A++ L+           L G  GV +            +      +G  G 
Sbjct: 238 APAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM-----------YVGVPTVIGANGV 286

Query: 296 EEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           E I ++  L++ E+   +K+   +AG  + 
Sbjct: 287 ERIIEI-DLDKDEKAQFDKSVASVAGLCEA 315

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  136 bits (346), Expect = 5e-38
 Identities = 90/336 (26%), Positives = 146/336 (43%), Gaps = 55/336 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--- 76
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH      V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSH---VTSVVDTNVS 65

Query: 77  -LGQPQLENALTGMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 189
             + +++NP++       +V  +A       + G+  MLD  R   +VA+ L + PRDV 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 190 VPVVGGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
             V+G H G  ++PL+  +                T+++ E +    +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 240 AGSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVR 289
            GSA  + A +AV  A + L              G+ G+ +            F      
Sbjct: 240 QGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDM-----------FIGLPAV 288

Query: 290 LGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           +G  G E + +L  LNE E+   +K+  ++    + 
Sbjct: 289 IGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  136 bits (345), Expect = 6e-38
 Identities = 68/335 (20%), Positives = 125/335 (37%), Gaps = 54/335 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           +V ++GA G +G      +    +   + L D       G   D +H   G V   F  +
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---GKV---FAPK 60

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P              DLV+I AG  +KPG TR DL + N  I R++ E +          
Sbjct: 61  PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           + +NPV+    I      K      ++++G  T+LD  R    + E   + P++V   ++
Sbjct: 121 VATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII 176

Query: 194 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           G H        +   I  +P+   V+      Q++ E +   +++   +++E K   G+ 
Sbjct: 177 GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GAT 233

Query: 244 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 293
              +A    +   A L            L G  G  +          +P       + R 
Sbjct: 234 YYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDVYI------GVP-----AVINRN 282

Query: 294 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 328
           G  E+ ++  LN+ E+     +   L   + +  +
Sbjct: 283 GIREVIEI-ELNDDEKNRFHHSAATLKSVLARAFT 316

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  136 bits (345), Expect = 8e-38
 Identities = 96/331 (29%), Positives = 155/331 (46%), Gaps = 50/331 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+        + G   +
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQ---TCPIEGVDFK 61

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
            +  N    L   D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CPNA V  I
Sbjct: 62  VRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++    I   + +K       K++G+  +LD  R  TF+A+ L +  + V   V+GG
Sbjct: 122 TNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGG 177

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
           H G T++PL          L Q+       QE  + + +R ++GG E+V      GSA  
Sbjct: 178 H-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYY 235

Query: 246 SMAYAAVKFADACLRGLR-----------GDAGVVECAFVASQVTELPFFASKVRLGRQG 294
           + A A ++ A++ L+  +           G  G+ E  FV      +P       +   G
Sbjct: 236 APAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVG-----VP-----TEISANG 285

Query: 295 AEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
              I ++  +++ ER  L+ +   +    + 
Sbjct: 286 VRPI-EV-EISDKEREQLQVSINAIKDLNKA 314

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  135 bits (343), Expect = 1e-37
 Identities = 73/339 (21%), Positives = 129/339 (38%), Gaps = 54/339 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GA G +G   A  +    +   L + DV      G   D++H   G     F  Q
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH---GKA---FAPQ 59

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P   +          D+V I AG  +KPG TR +L   N  I + +   +     +    
Sbjct: 60  PVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           + +NPV+    I      K      ++++G  T LD  R    ++E  G  P++V   ++
Sbjct: 120 VATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175

Query: 194 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           G H        +   +  +P+   V+   ++ QEE + + + ++N    ++E K   G+ 
Sbjct: 176 GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GAT 232

Query: 244 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 293
              +A +  +   A L            L G  G  +          +P       + R 
Sbjct: 233 YYGVAMSLARITKAILHNENSILTVSTYLDGQYGADDVYI------GVP-----AVVNRG 281

Query: 294 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           G   I +L  LNE E+     +   L   ++   +  K 
Sbjct: 282 GIAGITEL-NLNEKEKEQFLHSAGVLKNILKPHFAEQKV 319

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  134 bits (340), Expect = 4e-37
 Identities = 68/334 (20%), Positives = 128/334 (38%), Gaps = 54/334 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  M    +     + DVV   T G   D+           F   
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQA---FTAP 59

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
            ++     +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
            +NPV+    I      K   +  ++++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 195 GHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
            H G +     S                  + ++   L + ++N   +++  K   G+  
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATF 231

Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
             +  A ++ + A LR           + G  G+ +           P       +G  G
Sbjct: 232 YGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYI------GTP-----AIIGGTG 280

Query: 295 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 328
            ++I +  PL+  E   ++ +   L   +  G++
Sbjct: 281 LKQIIES-PLSADELKKMQDSAATLKKVLNDGLA 313

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  134 bits (339), Expect = 6e-37
 Identities = 70/334 (20%), Positives = 135/334 (40%), Gaps = 53/334 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         F   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN---ALP---FTSP 63

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
            ++     +     DLV+I AG P+KPG TR DL N N  I++++ + I     N    +
Sbjct: 64  KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
            +NPV+    I      K   +   +++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 195 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
            H        +   I  + +   VK      +++   +   +++   E+++ K   G+  
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GATF 236

Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
             +A A  + + A L            + G  G+ +           P       + R G
Sbjct: 237 YGIATALARISKAILNDENAVLPLSVYMDGQYGLNDIYI------GTP-----AVINRNG 285

Query: 295 AEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 328
            + I ++ PL ++E   ++K+  +L   +    +
Sbjct: 286 IQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 318

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  134 bits (339), Expect = 7e-37
 Identities = 76/338 (22%), Positives = 144/338 (42%), Gaps = 57/338 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E LG+ P      V+
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189

Query: 194 GGHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
           G H G + +P+ S V            +      +E+ + +  ++ +   EV++ K   G
Sbjct: 190 GEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---G 245

Query: 242 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 291
             + ++  +    A++ ++           ++G  G+ E  F++     +P       LG
Sbjct: 246 YTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLS-----VP-----CILG 295

Query: 292 RQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
           + G  ++ ++  L   E   L+K+   L G IQK + F
Sbjct: 296 QNGISDVVKV-TLTPDEEARLKKSADTLWG-IQKELQF 331

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  133 bits (336), Expect = 1e-36
 Identities = 69/339 (20%), Positives = 126/339 (37%), Gaps = 59/339 (17%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++GA G +G  LA       +   + L D+          D+ H   G+    F   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH---GSS---FYPT 61

Query: 80  PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
             ++           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   
Sbjct: 62  VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           LI+NPV+    IA  V +K       ++ G  T LD  R    +A+  G++ ++V   + 
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177

Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           G H              GV +               ++ E +   ++N   +++  K   
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWTPLPGHDP-LDADKREEIHQEVKNAAYKIINGK--- 233

Query: 241 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 290
           G+   ++  + V   +A L            L+   G+ +          +P       L
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDICM------SVP-----TLL 282

Query: 291 GRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
            RQG        P+++ E   L+++ + L         F
Sbjct: 283 NRQGVNNTINT-PVSDKELAALKRSAETLK-ETAAQFGF 319

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  133 bits (336), Expect = 2e-36
 Identities = 84/335 (25%), Positives = 144/335 (42%), Gaps = 56/335 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH     V+     +
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSH---TNVMAYSNCK 60

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 131
               N    L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 61  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120

Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 190
            + +++NPV+    +  ++  +       K++G+  +LD  R   ++++ L + PRDV+ 
Sbjct: 121 FIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176

Query: 191 PVVGGHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
            +VG H G  ++ L          L +       +  E E + +R  N   E+V      
Sbjct: 177 HIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH--- 232

Query: 241 GSATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRL 290
            S  ++ A A ++ A++ L+           L G  G  +            F  + V L
Sbjct: 233 ASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI-----------FGGTPVVL 281

Query: 291 GRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           G  G E++ +L  LN  E+   ++A  E       
Sbjct: 282 GANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  132 bits (335), Expect = 2e-36
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 53/331 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ I+G  G +G   A  + +      + L DV      G   D+ H   G     F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH---GTP---FTRR 54

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             +       L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
           ++NPV+    +    F K    DP+K+ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 195 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
            H        +G  I  +PL +  +       +  E    + +    E++E K   G+  
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATH 227

Query: 245 LSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQG 294
            ++A A     ++              L    GV +          +P     V LG+ G
Sbjct: 228 YAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCI------SVP-----VTLGKHG 276

Query: 295 AEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
            E I +L  LNE E     K+   L  +I +
Sbjct: 277 VERILEL-NLNEEELEAFRKSASILKNAINE 306

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  132 bits (334), Expect = 2e-36
 Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 55/332 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H         +   
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATP------YSPT 60

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                A         DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 61  TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           + +NPV+    I A    K      ++++G  T+LD  R    ++E   + PR VD  ++
Sbjct: 121 VATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176

Query: 194 GGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           G H G T LP+ S                   + + E +  + ++   ++++AK   G+ 
Sbjct: 177 GEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT 232

Query: 244 TLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQ 293
              +A    +  +A  R           L G+    +          +P       + R 
Sbjct: 233 YYGVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDVYI------GVP-----AVINRN 281

Query: 294 GAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           G   + ++ PLN+ E+     + K L   + +
Sbjct: 282 GIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAE 312

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  132 bits (334), Expect = 2e-36
 Identities = 69/337 (20%), Positives = 122/337 (36%), Gaps = 57/337 (16%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV I+G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
            +NPV+    +  +V        P +++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 195 GHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
            H G + + + S                  + + E+   +   ++     ++E K   G+
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GA 226

Query: 243 ATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGR 292
               +     +   A L                AGV+E +        LP       LG 
Sbjct: 227 TYYGIGAGLARLVRAILTDEKGVYTVSAFTPEVAGVLEVSL------SLP-----RILGA 275

Query: 293 QGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
            G         L+  ER  L ++ + L       + F
Sbjct: 276 GGVAGTVYP-SLSPEERAALRRSAEILKE-AAFALGF 310

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  130 bits (330), Expect = 1e-35
 Identities = 71/327 (21%), Positives = 123/327 (37%), Gaps = 41/327 (12%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 70
           +V + GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 71  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 130 NAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            +  V ++ NP N+    A+   K A +   +    +T LD  RA   +A  LG+   DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 189 DVPVVGGHAGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
              ++ G+   T  P ++            V                 +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGR 292
               SA +S A A          G     G      + S      V +   ++  V +  
Sbjct: 238 -KLSSA-MSAAKAICDHVRDIWFG--TPEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKD 293

Query: 293 QGAEEIFQLGPLNEYERIGLEKAKKEL 319
           +  + +  L P+N++ R  ++   KEL
Sbjct: 294 KTWKIVEGL-PINDFSREKMDLTAKEL 319

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  130 bits (329), Expect = 2e-35
 Identities = 80/334 (23%), Positives = 141/334 (42%), Gaps = 58/334 (17%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H   G     F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH---GLP---FMGQ 61

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
           +SNPV+    I   + +K       K++G  T+LD +R    ++E LG+D ++V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 195 GH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
            H             AG  I   +   K    FT+E+ + +   ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCN--FTEEDKKKIAEDVKTAGATIIKNK---G 232

Query: 242 SATLSMAYAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLG 291
           +    +A +     +  L+           + G  G+ + A        LP       + 
Sbjct: 233 ATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAI------SLP-----SIVN 281

Query: 292 RQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
            +G +E+ Q   L   E   L  + +++   + +
Sbjct: 282 SEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  128 bits (324), Expect = 2e-34
 Identities = 67/323 (20%), Positives = 111/323 (34%), Gaps = 36/323 (11%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 70
            +A+ GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 71  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
              +R              +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 130 -NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            N  V ++ NP N+   I     K A     K    +T LD  RA   +A   G+    V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 189 DVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
               + G+   T +P           VK     T+   E  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 242 SATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ-----VTELPFFASKVRLGRQGAE 296
           SA  S A +      + +       G      V +      + E   F+   R    G  
Sbjct: 266 SA-ASTAVSIADAIKSLVTP--TPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDY 322

Query: 297 EIFQLGPLNEYERIGLEKAKKEL 319
           E+      +++    ++K++ EL
Sbjct: 323 ELATDVSNDDFLWERIKKSEAEL 345

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  125 bits (317), Expect = 8e-34
 Identities = 82/321 (25%), Positives = 128/321 (39%), Gaps = 35/321 (10%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----G 70
           +VA+ GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 131 AT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD 189
              V ++ NP N+   IA    K A   +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 190 VPVVGGHAGVTILPLLSQV----KPPCSFTQEE--TEYLTNRIQNGGTEVVEAKAGAGSA 243
              V G+   T+ P L       +P       E   +     +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

Query: 244 TLSMAYAAVK-FADACLRGLRGDAGVVECAFVASQ----VTELPFFASKVRLGRQGAEEI 298
             S A AA++   D  L    GD   V  A V SQ    + E   ++  V   + GA  +
Sbjct: 239 -ASAANAAIEHIRDWALGTPEGD--WVSMA-VPSQGEYGIPEGIVYSFPVT-AKDGAYRV 293

Query: 299 FQLGPLNEYERIGLEKAKKEL 319
            +   +NE+ R  +E   +EL
Sbjct: 294 VEGLEINEFARKRMEITAQEL 314

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  124 bits (313), Expect = 2e-33
 Identities = 55/321 (17%), Positives = 108/321 (33%), Gaps = 46/321 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQP 80
           K+ ++G  G +G    + +    +   L L D+   T G T D+   +   V        
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS----- 69

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
           +  +A     +VI           +  D+   N  + R L   +     ++ + + S P 
Sbjct: 70  KDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
              V I   V  K  T+   +++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL 259
             +   S  +         +     ++ N   E++  K   G  + S+  +     D+ +
Sbjct: 184 DKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK---GQRSWSVGLSVADMVDSIV 234

Query: 260 RG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYE- 308
                        +G   +    F++     LP       LG  G  E+ +   L E   
Sbjct: 235 NNKKKVHSVSALAKGYYDINSEVFLS-----LP-----CILGTNGVSEVIKT-TLKEDTV 283

Query: 309 RIGLEKAKKELAGSIQKGISF 329
              L+ +   +   +Q+ +  
Sbjct: 284 TEKLQSSASSIHS-LQQQLKL 303

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  123 bits (312), Expect = 3e-33
 Identities = 73/326 (22%), Positives = 123/326 (37%), Gaps = 48/326 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  + +    S L L D           DI+H             
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
            ++     + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + +
Sbjct: 55  TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
            SNPV+    +  ++  +     P   ++G  T+LD  R    +A+  G+D       V+
Sbjct: 115 TSNPVD----LLTDLATQ---LAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           G H             AG+ +   +     P  + ++    +    +N    ++E K   
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQNLP--WNEQVRAKIDEGTRNAAASIIEGK--- 222

Query: 241 GSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIF 299
            +    +  A  +  +A LR  R          V++   E     S    +GRQG     
Sbjct: 223 RATYYGIGAALARITEAVLRDRR------AVLTVSAPTPEYGVSLSLPRVVGRQGVLSTL 276

Query: 300 QLGPLNEYERIGLEKAKKELAGSIQK 325
               L   E+  LE++   L G  Q+
Sbjct: 277 HP-KLTGDEQQKLEQSAGVLRGFKQQ 301

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  123 bits (312), Expect = 4e-33
 Identities = 75/324 (23%), Positives = 116/324 (35%), Gaps = 39/324 (12%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 68
           +VA+ GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 69  TGA-VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 128 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 186
              N  V ++ NP N+   IA    K A +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 187 DVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
            ++   V G+   T+             VK   +      +     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 240 AGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ----VTELPFFASKVRLGRQGA 295
             SA  S A AA+      + G  G         + S     + E   F   V     G 
Sbjct: 239 VSSA-ASAANAAIDHIHDWVLGTAGK--WTTMG-IPSDGSYGIPEGVIFGFPVTTEN-GE 293

Query: 296 EEIFQLGPLNEYERIGLEKAKKEL 319
            +I Q   ++ + +  +     EL
Sbjct: 294 YKIVQGLSIDAFSQERINVTLNEL 317

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  121 bits (306), Expect = 2e-32
 Identities = 68/322 (21%), Positives = 131/322 (40%), Gaps = 50/322 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    A        
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH---AAAGIDK--Y 55

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++        L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + 
Sbjct: 56  PKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL 115

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           +++NP++    +   +  K       ++ G+   LD  R    +      + R     ++
Sbjct: 116 VVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--II 169

Query: 194 GGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 253
           G H G ++    S         + + E + N ++    EV++ K   G+     A A  +
Sbjct: 170 GEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYR 222

Query: 254 FADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGP 303
              A +            L+G+ G+                    +LG+ GA E+  +  
Sbjct: 223 MVKAVVEDTGEIIPTSMILQGEYGIENV-----------AVGVPAKLGKNGA-EVADI-K 269

Query: 304 LNEYERIGLEKAKKELAGSIQK 325
           L++ E   L  + K L   +++
Sbjct: 270 LSDEEIEKLRNSAKILRERLEE 291

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  118 bits (299), Expect = 2e-31
 Identities = 61/324 (18%), Positives = 112/324 (34%), Gaps = 42/324 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ I+G  G +G  +A  +    +       D           D             L  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA------MANLEA 55

Query: 80  PQLENA-----LTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
                      L   D+VI   G  +     P   R       + +V+++   + +   +
Sbjct: 56  HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 189
             + +ISNPV+    +   +F+    +   K++G  T+LD  R    V E   LDPR V 
Sbjct: 116 GVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVS 171

Query: 190 VPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN---RIQNGGTEVVEAKAGAGS 242
              +G H G +     S V    +P  +        L       + GG  V+  K   G 
Sbjct: 172 GYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GY 227

Query: 243 ATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASK-VRLGRQGAEEIFQL 301
            +  +A +A++ A A +              V+++  ++  + S    +GR G      L
Sbjct: 228 TSYGVATSAIRIAKAVMADAH------AELVVSNRRDDMGMYLSYPAIIGRDGVLAETTL 281

Query: 302 GPLNEYERIGLEKAKKELAGSIQK 325
             L   E+  L +++  +     +
Sbjct: 282 -DLTTDEQEKLLQSRDYIQQRFDE 304

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  117 bits (296), Expect = 7e-31
 Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 48/332 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G    +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH---GSL---FLHT 75

Query: 80  PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
            ++      +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+    
Sbjct: 76  AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           L             +   K       +++G    LD  R    + E LG+    V   V+
Sbjct: 136 LHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191

Query: 194 GGHAGVTILPLLSQV---KPPCSF--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA 248
           G H G ++  + S +   K       +  E   L          VV       +      
Sbjct: 192 GQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVDVLTYVAWKG 250

Query: 249 YAAVKFADACLRG----------LRGDAGVVECAFVASQVTELPFFASKVRLGRQGAE-E 297
            +    A   ++           ++   G+ +  F++     LP       L    +   
Sbjct: 251 CSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLS-----LP-----CVLNNGISHCN 300

Query: 298 IFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
           I ++  L   E   L+K+   L   IQK + F
Sbjct: 301 IVKM-KLKPDEEQQLQKSATTLW-DIQKDLKF 330

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.7 bits (128), Expect = 3e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 19  AGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTG 70
              K+ I+GA G        ++ L K   L  S + L D+    ++     A     + G
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 119
           A ++ F     L++ +   D VI  A V     + +        G  R            
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 120 ---------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
                          +   I K  P A     +NP+         +  +     P K +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVG 172

Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
                       + E LGL+   VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 19  AGFKVAILGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVR 74
              K+A +G  G  G     ++ L     +   + LYD+          I +       R
Sbjct: 4   DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR 62

Query: 75  GFLGQPQLENALTGMDLVIIPAGV------------PRKPGMTRDDLFNINAG------- 115
            +     L+ AL+  D+VII                P + G+ +     +  G       
Sbjct: 63  -YEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLR 121

Query: 116 ---IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 172
              I   +   I    P + V   +NP++    +  +VF           +  T   +  
Sbjct: 122 AVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAE 181

Query: 173 ANTFVAEVLGLDPRDVDVPVVGGH 196
             T    +      D+ V V+G +
Sbjct: 182 MVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 42/251 (16%)

Query: 8   RQAKCRAKGGAAGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPG 59
                ++      F + I G  G    P   L +L  +    +  L LYD      +   
Sbjct: 16  ENLYFQSNMKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74

Query: 60  VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 119
              D+   +    +  F      E A T +D V+    V +      D+   +  G+V  
Sbjct: 75  GACDVFIREKAPDIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ 133

Query: 120 --------------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159
                               + + + K  P+A +   SNP          +         
Sbjct: 134 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN------ 187

Query: 160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 219
            K+L +  +  V     +A++LGL  R     +   + G+      + ++       +  
Sbjct: 188 SKILNICDM-PVGIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQE--GNDLM 241

Query: 220 EYLTNRIQNGG 230
             L   +   G
Sbjct: 242 PKLKEHVSQYG 252

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 37/204 (18%)

Query: 20  GFKVAILGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG 70
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 119
            V            AL G D V     V       +D+   +  G++             
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 120 ---------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170
                    +   + + CP+A +   +NP            K+      +K++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ------EKVVGLCNV-P 178

Query: 171 VRANTFVAEVLGLDPRDVDVPVVG 194
           +     VA++LG+D   V +   G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAG 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 39/226 (17%), Positives = 62/226 (27%), Gaps = 62/226 (27%)

Query: 72  VVRGFLGQP--QLENALT-----------GMD------LVIIPAGVPRKPGMTRDDLFNI 112
           V R    QP  +L  AL            G+       +      V     +     F I
Sbjct: 131 VSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKI 184

Query: 113 ---NAGIVRT---LCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFK-------KAGTYD 158
              N     +   + E + K       N  S   +S  + +     +       K+  Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY- 243

Query: 159 PKKLLGVTMLD------VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC 212
              LL   +L          A     ++L L  R   V      A  T + L        
Sbjct: 244 ENCLL---VLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISL---DHHSM 296

Query: 213 SFTQEETE-----YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK 253
           + T +E +     YL  R Q       E         LS+   +++
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQ---DLPREVLTTNPRR-LSIIAESIR 338

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.98
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.01
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.82
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.58
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.58
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.56
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.52
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.51
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.51
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.48
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.48
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.47
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.46
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.45
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.43
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.42
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.42
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.4
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.39
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.38
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.37
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.36
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.36
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.33
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.33
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.33
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.3
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.29
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.29
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.28
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.27
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.27
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.25
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.25
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.25
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.24
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.24
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.21
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.2
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.18
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.18
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.17
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.17
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.16
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.14
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.14
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.14
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.13
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.12
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.11
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.1
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.1
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.09
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.09
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.08
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.06
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.06
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.06
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.06
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.06
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.05
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.05
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.04
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.03
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.02
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.02
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.01
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.01
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.01
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.01
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.01
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.0
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.0
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.99
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	97.99
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.98
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.98
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.95
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.95
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.94
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.93
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.93
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.93
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.92
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.91
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.91
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.91
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.91
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.91
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.91
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.9
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.9
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.9
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.9
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.89
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.89
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.87
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.87
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.87
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.87
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.86
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.86
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	97.85
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.85
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.85
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.84
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.84
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.83
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.83
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.83
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.83
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.83
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.83
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.82
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.82
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.82
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.82
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.81
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.81
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.8
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.8
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.79
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.79
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.79
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.79
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.78
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.78
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.78
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.78
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	97.77
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.77
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.77
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.77
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.77
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.77
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.76
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.76
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.75
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.75
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.74
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.74
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.74
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.74
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.73
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.73
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.73
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.72
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.72
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.72
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.72
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.71
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.71
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.71
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.7
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.7
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.7
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.69
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.69
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.69
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.68
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.68
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.68
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.68
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.68
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.68
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.67
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.67
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	97.66
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.66
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.66
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.66
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.66
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.65
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.65
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.65
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.65
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.65
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.65
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.65
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.64
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.64
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.64
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.64
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.64
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.64
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.63
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.63
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.63
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.63
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.63
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.63
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.63
1spx_A	278	Short-chain reductase family member (5L265); paral	97.63
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.63
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.63
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.62
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.62
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.62
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.62
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.62
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.62
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.62
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.62
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.62
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.61
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.61
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.6
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.6
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.6
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.6
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.6
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.6
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.6
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.6
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.6
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.59
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.59
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.59
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.59
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.58
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.58
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.58
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.58
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.58
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.57
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.57
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.57
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.56
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.56
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.56
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.56
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.55
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.55
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.55
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.55
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.54
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.54
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.54
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.53
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.53
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.53
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.53
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.53
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.53
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.52
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.52
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.52
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.52
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.52
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.51
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.51
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.51
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.51
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.51
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.51
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.5
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.5
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.5
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.5
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.5
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.49
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.49
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.49
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.49
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.48
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.48
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.48
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.48
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.47
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.47
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.47
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.47
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.47
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.47
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.47
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.47
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.47
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.46
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.45
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.45
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.45
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.45
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.44
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.44
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.44
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.43
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.43
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.42
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.42
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.42
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.42
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.42
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.42
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.42
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.41
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.41
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.41
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.41
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.41
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.4
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.4
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.4
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.4
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.4
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.4
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.4
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.39
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.39
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.39
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.39
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.39
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.39
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	97.39
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.38
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.38
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.38
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.37
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.37
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.36
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.36
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.35
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.35
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.35
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.34
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.34
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.34
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.33
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.33
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.33
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.33
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.32
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.31
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.3
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.29
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.29
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.28
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.28
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.26
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.26
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.26
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.26
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.26
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.26
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.26
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.25
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.25
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.24
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.24
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.23
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.22
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.22
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.21
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.21
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.2
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.18
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.15
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.13
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.11
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.1
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.1
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.1
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.09
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.08
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.03
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.02
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.01
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.0
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.99
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.99
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.98
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.97
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.97
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.96
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.94
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.93
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	96.93
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.92
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.89
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	96.89
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.93
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.88
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.88
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.87
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.87
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.86
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.84
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.83
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.82
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.78
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.77
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.75
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.72
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.71
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.68
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.67
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.66
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	96.61
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.59
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.58
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.57
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.56
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.54
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.51
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	96.49
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.49
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.49
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.49
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.48
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.47
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.45
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.44
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.42
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	96.41
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.39
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	96.38
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.36
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.35
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.33
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.33
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.32
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	96.32
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	96.32
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.3
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	96.25
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.25
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.22
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.21
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.21
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.21
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.21
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.2
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.18
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.14
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	96.14
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.13
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	96.12
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.12
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.1
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.07
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.06
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.05
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.04
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.03
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.99
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.99
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.98
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.97
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.94
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.94
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	95.93
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.93
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.92
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	95.92
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.87
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.83

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=2.9e-65  Score=476.61  Aligned_cols=308  Identities=54%  Similarity=0.844  Sum_probs=274.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+||||+|+||+++++.|+.+ ++..||+|+|+++ ..|+++||.|......+..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            69999996699999999999886 7778999999997 7899999999864345554432 2347999999999999999


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC-CCCceEEeehhhHHHHHHHH
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY-DPKKLLGVTMLDVVRANTFV  177 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~-~~~kviG~~~ld~~r~~~~l  177 (332)
                      |+++||+|.|++.+|+++++++++.|.++||+++++++|||+|++|++++++ ++.+|+ |++||+|+|.||+.|+++++
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~-~k~sg~~p~~rv~G~~~LD~~R~~~~l  158 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEV-LKKAGVYDKNKLFGVTTLDIIRSNTFV  158 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHH-HHHTTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHH-HHHcCCCCcceEEEEechhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986655 456777 99999999999999999999


Q ss_pred             HHHhCCCCCCCceeEEEec-CCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHH
Q 020049          178 AEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  256 (332)
Q Consensus       178 a~~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~  256 (332)
                      |+++|++|++|+++|||+| |+ +++|+||++ .+.++++++|+++.++|++++++|++.|.|+|++.||+|.+++++++
T Consensus       159 a~~lgv~~~~v~~~V~G~Hsg~-t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~  236 (312)
T 3hhp_A          159 AELKGKQPGEVEVPVIGGHSGV-TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_dssp             HHHHTCCGGGCCCCEEECSSGG-GEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHhCcChhHcceeEEeccCCC-ceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHH
Confidence            9999999999999999999 76 999999998 33458888999999999999999999776779999999999999999


Q ss_pred             HHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 020049          257 ACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  332 (332)
Q Consensus       257 ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~~  332 (332)
                      +|+.+.++++.++++++++|+.+.++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++|++|+++
T Consensus       237 ai~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          237 SLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             HHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9943332233588888888765558999999999999999999966999999999999999999999999999874

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=2.8e-64  Score=471.81  Aligned_cols=311  Identities=57%  Similarity=0.938  Sum_probs=286.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+||||+|+||++++..|+..++..+|+|+|+++.++.++||.|.....+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999998899999999999988877899999999878899999998754566654334578889999999999999999


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHH
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  180 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~  180 (332)
                      ++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++++++++.+++|++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             hCCCCCCCceeEEEec-CCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHHHHH
Q 020049          181 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACL  259 (332)
Q Consensus       181 l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~  259 (332)
                      +|++|++|+++|||+| |+ +++|+||.+++...+++++|+++.+++++++++|++.+.|+|++.||+|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 78 999999999854458888899999999999999999877889999999999999999999


Q ss_pred             cCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 020049          260 RGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK  332 (332)
Q Consensus       260 ~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~~~  332 (332)
                      +|+++++.++++++++|+|++++|||+||++|++|+++++.+++|+++|+++|++|++.|++.++.+++|++.
T Consensus       240 ~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~~  312 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKN  312 (314)
T ss_dssp             HHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9976444588888999999889999999999999999998866999999999999999999999999998763

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=5e-64  Score=471.22  Aligned_cols=297  Identities=23%  Similarity=0.376  Sum_probs=264.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCC-eEEEEeCCCCHHhhcCCCcEEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ..+.+||+|||| |.||+++++.|+..++..+|+|+|+++  ++|+++||.|....+ ..... .++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIV-SSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEE-ECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEE-EcCCH-HHhCCCCEEE
Confidence            445689999999 999999999999999888999999987  689999999985222 11222 24575 6899999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      +++|.|+++||+|.|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~----~k~sg~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA----WKISGFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHHhCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999998654    67789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCC
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGA  240 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~k  240 (332)
                      +++++|+++|++|++|+++|||+||+ +++|+||++++.+            .+++++|+++.+++++++++|++.   |
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---k  244 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---K  244 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc---C
Confidence            99999999999999999999999999 9999999997632            235667899999999999999994   5


Q ss_pred             CchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 020049          241 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  317 (332)
Q Consensus       241 g~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~  317 (332)
                      |+++||+|.++++++++|++|++   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|++
T Consensus       245 g~t~~a~a~a~a~~~~ail~d~~---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~  320 (331)
T 4aj2_A          245 GYTSWAIGLSVADLAESIMKNLR---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSAD  320 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHHH
Confidence            88999999999999999999975   478775 789998  46999999999999999999995 999999999999999


Q ss_pred             HHHHHHHHhhhh
Q 020049          318 ELAGSIQKGISF  329 (332)
Q Consensus       318 ~l~~~~~~~~~~  329 (332)
                      .|++ ++++++|
T Consensus       321 ~l~~-~~~~~~~  331 (331)
T 4aj2_A          321 TLWG-IQKELQF  331 (331)
T ss_dssp             HHHH-HHTTCCC
T ss_pred             HHHH-HHhhcCC
Confidence            9997 5565553

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=4e-63  Score=457.70  Aligned_cols=282  Identities=23%  Similarity=0.360  Sum_probs=255.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||| |+||+++|+.|+.+++.+||+|+|+++  ++|+++||.|...    .+.+..   ++| +++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d-~~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCC-HHHhCCCCEEEE
Confidence            79999998 999999999999999999999999998  7899999999642    234443   346 588999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      +||.|++|||+|+|++..|.++++++++.+.++||+++++++|||+|++||++    ++.+|+|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~----~k~sg~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSSCCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh----HHHcCCChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999998764    78899999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  253 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~  253 (332)
                      ++++++.+++++.  +++|||+||+ +++|+||.+++...   .+++++.+++++.+++|++   +||++.||+|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~---~~~~~i~~~~~~~g~eIi~---~kGst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGE---VDWEAVENDVRFVAAEVIK---RKGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESC---CCHHHHHHHHHTHHHHHHH---HHSSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCc---hhHHHHHHHHhhhheEEEe---cCcccchhHHHHHHH
Confidence            9999999987754  6899999999 99999999987542   2467888999999999998   568999999999999


Q ss_pred             HHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          254 FADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       254 ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      ++++|++|++   .++|++ +++|+| .+++|||+||++|++|+ +++++ +|+++|+++|++|++.||+.+++
T Consensus       223 ~~~ail~d~~---~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gv-ei~~l-~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEE-EECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---cEEEEEEEEecCCCCccEEEEEEEEEeCCEE-EEeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999975   588886 789999 67999999999999998 58885 99999999999999999998875

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=8.8e-62  Score=457.25  Aligned_cols=313  Identities=90%  Similarity=1.356  Sum_probs=282.6

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      ..+.++|||+||||+|++|++++..|+..++..+|+|+|+++..+.++||.+......+..+.+++|++++++|||+||+
T Consensus         3 ~~~~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~   82 (326)
T 1smk_A            3 KGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIV   82 (326)
T ss_dssp             -----CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEE
T ss_pred             ccCCCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEE
Confidence            34456789999996699999999999988876799999998777888999987643356554344578899999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      ++|.|+++|++|.|++..|+++++++++.+.+++|++||+++|||+|++|+++++++++++++|++||||+|.||+.|++
T Consensus        83 ~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~  162 (326)
T 1smk_A           83 PAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN  162 (326)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHH
T ss_pred             cCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEec-CCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHH
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  253 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h-g~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~  253 (332)
                      +++|+++|++|++|+++|||+| |+ +++|+||.+++...+++++++++.+++++++++|++.|.|+|++.||+|.++++
T Consensus       163 ~~la~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~  241 (326)
T 1smk_A          163 TFVAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVK  241 (326)
T ss_dssp             HHHHHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHH
T ss_pred             HHHHHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Confidence            9999999999999999999999 87 999999999886668888899999999999999999766779999999999999


Q ss_pred             HHHHH---HcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 020049          254 FADAC---LRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFS  330 (332)
Q Consensus       254 ii~ai---~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~~~  330 (332)
                      ++++|   ++|++   .++++++++|+|+++++||+||++|++|+++++++++|+++|+++|++|++.|++.++.+.+|.
T Consensus       242 ~~~ai~~~~~~~~---~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~~~~~~~~~~  318 (326)
T 1smk_A          242 FADACLRGLRGDA---GVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI  318 (326)
T ss_dssp             HHHHHHHHHHTCS---CEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCC---eEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999   88875   4888888899888899999999999999999998349999999999999999999999998886


Q ss_pred             c
Q 020049          331 K  331 (332)
Q Consensus       331 ~  331 (332)
                      .
T Consensus       319 ~  319 (326)
T 1smk_A          319 R  319 (326)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.7e-62  Score=460.21  Aligned_cols=298  Identities=31%  Similarity=0.492  Sum_probs=262.9

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCC
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~   88 (332)
                      |++++++||+|||| |++|++++..|+..++. +|+|+|+++  +++.++|+.|...    ...+..   ++|+ ++++|
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---t~d~-~a~~~   75 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG---ANDY-AAIEG   75 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESSG-GGGTT
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE---eCCH-HHHCC
Confidence            67888899999999 99999999999999886 999999998  5788999988742    344553   3575 89999


Q ss_pred             CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee-h
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-M  167 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~-~  167 (332)
                      ||+||+++|.|+++|++|.|++.+|+++++++++.|.++||++|+|++|||+|++|+++    ++++++|++||+|+| .
T Consensus        76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~  151 (324)
T 3gvi_A           76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL----QKFSGLPAHKVVGMAGV  151 (324)
T ss_dssp             CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH----HHhcCCCHHHEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999998764    678899999999996 8


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcc
Q 020049          168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~  237 (332)
                      ||+.|+++++|+++|++|++|+++|||+||+ +++|+||++++.+          .+++++++++.+++++++++|++++
T Consensus       152 LD~~R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~  230 (324)
T 3gvi_A          152 LDSARFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL  230 (324)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc
Confidence            9999999999999999999999999999999 9999999998742          1367788999999999999999977


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 020049          238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  315 (332)
Q Consensus       238 ~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  315 (332)
                       |+|++.||+|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|
T Consensus       231 -gkgsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s  305 (324)
T 3gvi_A          231 -KTGSAFYAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKS  305 (324)
T ss_dssp             -SSCCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHH
Confidence             8899999999999999999999975   588886 789999 56999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 020049          316 KKELAGSIQKGIS  328 (332)
Q Consensus       316 a~~l~~~~~~~~~  328 (332)
                      ++.|++.++....
T Consensus       306 ~~~l~~~~~~~~~  318 (324)
T 3gvi_A          306 VASVAGLCEACIG  318 (324)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987643

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=5.5e-62  Score=456.69  Aligned_cols=298  Identities=32%  Similarity=0.491  Sum_probs=269.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      ++.+||+|||| |.+|+++++.|+..++. +|+|+|+++  +++.++||.|...    ...+..   ++| +++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~---t~d-~~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG---TND-YKDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE---cCC-HHHHCCCCE
Confidence            34579999998 99999999999999887 999999998  5789999999742    344543   346 589999999


Q ss_pred             EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee-hhhH
Q 020049           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDV  170 (332)
Q Consensus        92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~-~ld~  170 (332)
                      ||+++|.|+++|++|.|++.+|+++++++++.|.++||+++++++|||+|++|+++    ++++++|++||+|+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~sg~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML----QKFSGVPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHhcCCCHHHEEeeccchHH
Confidence            99999999999999999999999999999999999999999999999999998654    778899999999996 9999


Q ss_pred             HHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCC
Q 020049          171 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGA  240 (332)
Q Consensus       171 ~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~k  240 (332)
                      .|+++++|+++|++|++|+++|||+||+ +++|+||++++.+          .+++++++++.+++++++++|++++ |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            9999999999999999999999999999 9999999998743          1367788999999999999999977 88


Q ss_pred             CchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEe-CCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 020049          241 GSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVA-SQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  316 (332)
Q Consensus       241 g~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~-g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa  316 (332)
                      |++.||+|.++++++++|++|++   .+++++ +++ |+|  ++++|||+||++|++|++++ ++ +|+++|+++|++|+
T Consensus       231 gsa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~  305 (321)
T 3p7m_A          231 GSAYYAPAAAGIQMAESFLKDKK---MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSI  305 (321)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCC---cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHH
Confidence            99999999999999999999975   588886 789 898  55999999999999999999 85 99999999999999


Q ss_pred             HHHHHHHHHhhhhhcC
Q 020049          317 KELAGSIQKGISFSKK  332 (332)
Q Consensus       317 ~~l~~~~~~~~~~~~~  332 (332)
                      +.|++.++...+++++
T Consensus       306 ~~l~~~~~~~~~~l~~  321 (321)
T 3p7m_A          306 NAIKDLNKAAAEILAK  321 (321)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHhhC
Confidence            9999999988777764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=1.3e-62  Score=459.06  Aligned_cols=295  Identities=26%  Similarity=0.466  Sum_probs=260.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||| |.||+++++.|+..++..+|+|+|+++  ++|+++||.|...    ..++..   +.+ +++++|||+||+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~---~~~-~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG---TND-YGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEE---ESS-SGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEE---CCC-HHHhCCCCEEEE
Confidence            79999999 999999999999999888999999988  6899999998742    233442   234 689999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee-hhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~-~ld~~r~  173 (332)
                      ++|.|+++|++|.|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++.+|+|++||+|+| .||+.|+
T Consensus        76 ~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~----~k~~g~p~~rviG~~t~LD~~R~  151 (314)
T 3nep_X           76 TAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA----YEASGFPTNRVMGMAGVLDTGRF  151 (314)
T ss_dssp             CCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH----HHHHTCCGGGEEECCHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH----HHhcCCChHHEEeecCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999875    567899999999995 9999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----CCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  248 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a  248 (332)
                      ++++|+++|++|++|+++|||+||+ +++|+||++++.+     .+++++++++.+++++++++|+++| |+ ++.||+|
T Consensus       152 ~~~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a  228 (314)
T 3nep_X          152 RSFIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPG  228 (314)
T ss_dssp             HHHHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHH
T ss_pred             HHHHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHH
Confidence            9999999999999999999999999 9999999998743     2466778999999999999999976 44 8999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 020049          249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  326 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~  326 (332)
                      .++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++..
T Consensus       229 ~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~  304 (314)
T 3nep_X          229 AAAAEMTEAILKDNK---RILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDL  304 (314)
T ss_dssp             HHHHHHHHHHHHTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---eEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588886 899999 67999999999999999999996 999999999999999999999987


Q ss_pred             hhhhc
Q 020049          327 ISFSK  331 (332)
Q Consensus       327 ~~~~~  331 (332)
                      .++++
T Consensus       305 ~~~l~  309 (314)
T 3nep_X          305 QRLRD  309 (314)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.8e-63  Score=465.22  Aligned_cols=293  Identities=22%  Similarity=0.370  Sum_probs=245.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .++||+|||| |+||+++++.|+..++..+|+|+|+++  ++|+++||.|.... ..++..  +.+ +++++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~--~~~-~~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIY--SAE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEE--ECC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEE--ECc-HHHhcCCCEEEEC
Confidence            3479999998 999999999999999888999999987  68999999998531 234433  234 6889999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      +|.|+++|++|.|++.+|+++++++++.|.++||++|++++|||+|++|+++    ++++++|++||||+ |.||+.|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~----~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT----WKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH----HHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    67889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----------CCHHHHHHHHHHHhccchhhhhcccCCCch
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  243 (332)
                      +++|+++|++|++|+++||||||+ +++|+||++++.+ +          +++++++++.++|++++++|++   +||++
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~kG~t  235 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK---LKGAT  235 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH---HHSCC
T ss_pred             HHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---cCCCc
Confidence            999999999999999999999999 9999999998753 1          1466789999999999999999   56899


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 020049          244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  321 (332)
Q Consensus       244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~  321 (332)
                      +||+|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       236 ~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~~  311 (326)
T 3vku_A          236 FYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKK  311 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHhcCCC---ceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999864   588875 899999 56999999999999999999996 9999999999999999998


Q ss_pred             HHHHhh
Q 020049          322 SIQKGI  327 (332)
Q Consensus       322 ~~~~~~  327 (332)
                      .++...
T Consensus       312 ~~~~~~  317 (326)
T 3vku_A          312 VLTDAF  317 (326)
T ss_dssp             C-----
T ss_pred             HHHHHH
Confidence            887653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=8.6e-62  Score=449.89  Aligned_cols=282  Identities=23%  Similarity=0.355  Sum_probs=257.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC--C--CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD--T--GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~--~--~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||| |.+|+++++.|+..++.++|+|+|+++  ++++++|+.|..  .  ...+..   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            69999999 999999999999989888999999988  677889998864  2  234443   346 799999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      ++|.|+++|++|.|++.+|+++++++++.|.++||+++++++|||+|++|+++    ++.++||++||||+ |.||++|+
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH----HHhcCCCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    78899999999999 89999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVK  253 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~  253 (332)
                      ++++| ++|++|++ +++|||+||+ +++|+||++++.. .+  +++++.+++++++++|++.   ||+++||+|.++++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHH
Confidence            99999 99999999 9999999999 9999999999853 22  5889999999999999994   58999999999999


Q ss_pred             HHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          254 FADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       254 ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      ++++|++|++   .+++++ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|++.|++.++.
T Consensus       223 ~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCC---eEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999999864   588886 899999 569999999999999999 9996 99999999999999999998875

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=8e-62  Score=454.21  Aligned_cols=291  Identities=29%  Similarity=0.462  Sum_probs=264.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC--C--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--N--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~--~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD   90 (332)
                      +.+||+|||| |.+|+++++.|+..++ .+|+|+|++  +  ++|.++|+.|..    ...++..   ++| +++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG---TSD-YADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE---ESC-GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE---cCC-HHHhCCCC
Confidence            3569999999 9999999999999998 899999999  4  678889998864    2345554   346 58899999


Q ss_pred             EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhh
Q 020049           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  169 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld  169 (332)
                      +||+++|.|+++|++|.|++.+|+++++++++.+.++||++|++++|||+|++|+++    ++++|+|++||||+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~----~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV----FKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH----HHhcCCChHHEEeeccCcH
Confidence            999999999999999999999999999999999999999999999999999999875    57789999999999 9999


Q ss_pred             HHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       170 ~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +.|+++++|+++|++|++|+++|||+||+ +++|+||++++.+     .++++++++|.+++++++++|++++ |||++.
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            99999999999999999999999999999 9999999998753     2567788999999999999999863 789999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  322 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~  322 (332)
                      ||+|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       235 ~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~  310 (315)
T 3tl2_A          235 YAPAASLVEMTEAILKDQR---RVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNV  310 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   588886 889999 67999999999999999999996 99999999999999999988


Q ss_pred             HHH
Q 020049          323 IQK  325 (332)
Q Consensus       323 ~~~  325 (332)
                      ++.
T Consensus       311 ~~~  313 (315)
T 3tl2_A          311 MKV  313 (315)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=2.3e-62  Score=459.64  Aligned_cols=292  Identities=23%  Similarity=0.320  Sum_probs=263.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +++||+|||| |+||+++++.|+..++..+|+|+|+++  ++++++||.|....  ..++.+  +++ +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EEC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCc-HHHhCCCCEEEE
Confidence            4579999998 999999999999999888999999987  68999999997321  234443  235 588999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      ++|.|+++|++|.|++..|+++++++++.+.++||++|++++|||+|++|+++    ++++++|++||||+ |.||+.|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~----~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT----WKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH----HHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999998664    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----------CCHHHHHHHHHHHhccchhhhhcccCCCc
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  242 (332)
                      ++++|+++|++|++|+++||||||+ +++|+||++++.+ +          +++.++++|.++|++++++|++   +||+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~kG~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE---KKGA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeee---CCCC
Confidence            9999999999999999999999999 9999999998743 1          2566789999999999999999   4689


Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       243 ~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      ++||+|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 t~~a~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~  307 (326)
T 3pqe_A          232 TYYGVAMSLARITKAILHNEN---SILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLK  307 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCCC---cEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999864   588875 899999 56999999999999999999996 999999999999999999


Q ss_pred             HHHHHh
Q 020049          321 GSIQKG  326 (332)
Q Consensus       321 ~~~~~~  326 (332)
                      +.++..
T Consensus       308 ~~~~~~  313 (326)
T 3pqe_A          308 NILKPH  313 (326)
T ss_dssp             HHHTTT
T ss_pred             HHHHHh
Confidence            988754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.4e-61  Score=456.64  Aligned_cols=297  Identities=26%  Similarity=0.363  Sum_probs=255.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      |++.+||+||||+|+||+++++.++..++..+|+|+|+++  ++|.++||.|..+. .++..   ++|++++++|||+||
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVv   81 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIV   81 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEE
Confidence            5677899999987999999999999999877999999987  68999999997642 24443   357789999999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcE-EEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~-viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r  172 (332)
                      +++|.|+++|++|.|++.+|+++++++++.+.++||++| ++++|||+|++|+++    ++.+|+|++||+|+|.||++|
T Consensus        82 itaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~----~k~sg~p~~rv~g~t~LDs~R  157 (343)
T 3fi9_A           82 SSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT----LIYSGLKPSQVTTLAGLDSTR  157 (343)
T ss_dssp             ECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH----HHHHTCCGGGEEEECCHHHHH
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH----HHHcCCCcceEEEecCcHHHH
Confidence            999999999999999999999999999999999999996 899999999999875    577799999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCC
Q 020049          173 ANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAG  241 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg  241 (332)
                      +++++|+++|++|++|+ ++||||||+ +++|+||.+++.+          .+++++|+++.++|++++++|++.|   |
T Consensus       158 ~~~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---g  233 (343)
T 3fi9_A          158 LQSELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR---G  233 (343)
T ss_dssp             HHHHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH---S
T ss_pred             HHHHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc---C
Confidence            99999999999999996 899999999 9999999998642          1467789999999999999999954   5


Q ss_pred             ch-hhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeCCCCCccEEEEeEEEcCCceEEeccCCC-CCHHHHHHHHHHHHH
Q 020049          242 SA-TLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQVTELPFFASKVRLGRQGAEEIFQLGP-LNEYERIGLEKAKKE  318 (332)
Q Consensus       242 ~~-~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~-L~~~E~~~l~~sa~~  318 (332)
                      ++ .||+|.++++++++|++|++   .++++ ++++|++.+++|||+||++|++|++.+ .+++ |+++|+++|++|++.
T Consensus       234 ~ss~~s~A~a~~~~~~ail~d~~---~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~  309 (343)
T 3fi9_A          234 RSSFQSPSYVSIEMIRAAMGGEA---FRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSH  309 (343)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTSSC---CCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHH
T ss_pred             CCcHHhHHHHHHHHHHHHHhCCC---ceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHH
Confidence            44 57999999999999999986   36665 488887777999999999999999876 4322 899999999999999


Q ss_pred             HHHHHHHhhh
Q 020049          319 LAGSIQKGIS  328 (332)
Q Consensus       319 l~~~~~~~~~  328 (332)
                      |++.++....
T Consensus       310 l~~~~~~~~~  319 (343)
T 3fi9_A          310 LAKLRDEVIA  319 (343)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=2.9e-60  Score=447.33  Aligned_cols=310  Identities=23%  Similarity=0.306  Sum_probs=249.9

Q ss_pred             hhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCC
Q 020049            9 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQ   79 (332)
Q Consensus         9 ~~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~   79 (332)
                      +++|+.|+++.+.||+|+||+|+||+++++.|++.+++.     +|+|+|+++    ++|.++||+|+.+........ +
T Consensus        13 ~~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~   91 (345)
T 4h7p_A           13 EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-T   91 (345)
T ss_dssp             ---------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-E
T ss_pred             cccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-c
Confidence            688999999999999999998999999999999887654     999999987    478999999998654444433 4


Q ss_pred             CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      +|.+++++|||+||+++|.|++|||+|.|++..|.++++++++.|.++| |+++|+++|||+|++++++   +++.+|+|
T Consensus        92 ~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g~~  168 (345)
T 4h7p_A           92 ADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL---LKSAQGKL  168 (345)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTTCS
T ss_pred             CChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH---HHHccCCC
Confidence            5678999999999999999999999999999999999999999999998 7899999999999999875   34567877


Q ss_pred             CCceEEe-ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCCC-----CCCHHHH-HHHHHHHhccc
Q 020049          159 PKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-----SFTQEET-EYLTNRIQNGG  230 (332)
Q Consensus       159 ~~kviG~-~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~-~~l~~~v~~~~  230 (332)
                      ++|+||. |.||++|+++++|+++|++|++|+ .+|||+||+ +++|+||.+++.+     .++++.+ +++.+++++++
T Consensus       169 ~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g  247 (345)
T 4h7p_A          169 NPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRG  247 (345)
T ss_dssp             CGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHH
T ss_pred             CcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhh
Confidence            7777766 999999999999999999999996 568999999 9999999998753     1333333 57999999999


Q ss_pred             hhhhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEeeEE-eCCC--CCccEEEEeEEEcCCceEEeccCCCCCHH
Q 020049          231 TEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV-ASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEY  307 (332)
Q Consensus       231 ~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~~~-~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~  307 (332)
                      ++|++.|  ++++.||+|.++++++++|++|.+...++....++ +|+|  ++++|||+||+++ +|.+++++..+|+++
T Consensus       248 ~eIi~~k--g~ss~~s~a~a~~~~~~~~l~~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~  324 (345)
T 4h7p_A          248 AEIIQLR--GLSSAMSAAKAAVDHVHDWIHGTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDL  324 (345)
T ss_dssp             HHHHHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC----
T ss_pred             hhhhhcC--CCcchhhHHHHHHHHHHHHhcCCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHH
Confidence            9999975  35788999999999999999998754323222344 5888  6899999999997 688888875699999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 020049          308 ERIGLEKAKKELAGSIQKG  326 (332)
Q Consensus       308 E~~~l~~sa~~l~~~~~~~  326 (332)
                      |+++|++|+++|+++.+.+
T Consensus       325 e~~~l~~s~~~L~~E~~~A  343 (345)
T 4h7p_A          325 GKQRLASTIAELQEERAQA  343 (345)
T ss_dssp             -CGGGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999987654

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.2e-60  Score=445.89  Aligned_cols=296  Identities=22%  Similarity=0.355  Sum_probs=257.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||+|||| |++|++++..|+..++.+||+|+|+++  +++.++|+.|... ...++...  .+ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            379999999 999999999999989889999999987  6788999998751 13333332  24 68899999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~  175 (332)
                      |.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYA----TWKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEeccccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999865    477889999999999 9999999999


Q ss_pred             HHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCchhh
Q 020049          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  245 (332)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~  245 (332)
                      ++|+++|++|++|+++|||+||+ +++|+||++++.+          .++++.++++.++++++++++++   +||+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCCH
T ss_pred             HHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcchH
Confidence            99999999999999999999999 9999999988642          25666789999999999999998   5689999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          246 SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       246 s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      ++|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       233 ~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  308 (318)
T 1ez4_A          233 GIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVL  308 (318)
T ss_dssp             HHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999965   477775 789998 44999999999999999999995 999999999999999999999


Q ss_pred             HHhhhhhc
Q 020049          324 QKGISFSK  331 (332)
Q Consensus       324 ~~~~~~~~  331 (332)
                      +...++++
T Consensus       309 ~~~~~~~~  316 (318)
T 1ez4_A          309 NDGLAELE  316 (318)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99988775

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=3.7e-60  Score=445.61  Aligned_cols=297  Identities=22%  Similarity=0.368  Sum_probs=259.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +++||+|||| |++|++++..|+..++..||+|+|+++  +++.++||.|... ...++...  .+ +++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            3479999999 999999999999988889999999987  6788999999751 13333332  24 6889999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~----~~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYA----TWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH----HHHHcCCCHHHEEEccccchHHHHH
Confidence            999999999999999999999999999999999999999999999999865    477889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----------CCCHHHHHHHHHHHhccchhhhhcccCCCch
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  243 (332)
                      +++|+++|++|++|+++|||+||+ +++|+||++++.+           .++++.++++.++++++++++++   +||++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCCc
Confidence            999999999999999999999999 9999999987632           14566788999999999999998   56899


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 020049          244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  321 (332)
Q Consensus       244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~  321 (332)
                      +|++|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       236 ~~~~a~aa~~~~~ai~~~~~---~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  311 (326)
T 2zqz_A          236 FYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKK  311 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC---cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999975   477775 889998 34999999999999999999995 9999999999999999999


Q ss_pred             HHHHhhhhhc
Q 020049          322 SIQKGISFSK  331 (332)
Q Consensus       322 ~~~~~~~~~~  331 (332)
                      .++...++++
T Consensus       312 ~~~~~~~~~~  321 (326)
T 2zqz_A          312 VLTDAFAKND  321 (326)
T ss_dssp             HHHHHC----
T ss_pred             HHHHHHHhhh
Confidence            9999888775

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=5.6e-59  Score=441.16  Aligned_cols=300  Identities=19%  Similarity=0.206  Sum_probs=252.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE---EEEEccCC------cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN------TPGVTADISHMDTG--AVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~e---i~L~D~~~------~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~   87 (332)
                      +++||+||||+|+||+++++.|+.++++++   |+|+|.+.      ++|+++||+|+.+.  ..+...  + +.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~--~-~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG--I-DPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE--S-CHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe--c-CCHHHhC
Confidence            468999999779999999999999988766   77765543      58999999999742  234432  3 4479999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-  165 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-  165 (332)
                      |||+||+++|.|+++||+|.|++..|+++++++++.|.++ +|++++|++|||+|++||++    ++.++++++|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia----~k~sg~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC----LKNAPDIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH----HHHcCCCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999999875    67667777788998 


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCce-eEEEecCCCceeecccCCCCCC----C-CCHHHH--HHHHHHHhccchhhhhcc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC----S-FTQEET--EYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~----~-~~~~~~--~~l~~~v~~~~~~i~~~~  237 (332)
                      |.||++|+++++|+++|++|++|+. +|||+||+ ++||+||++++.+    . ..+++|  +++.++|++++++|++.|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999985 89999999 9999999998743    1 334444  689999999999999954


Q ss_pred             cCCCchhhH-HHHHHHHHHHHHHcCCCCCCcEEEee-EEeC-CC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 020049          238 AGAGSATLS-MAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  312 (332)
Q Consensus       238 ~~kg~~~~s-~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l  312 (332)
                         |.++|+ .|.++++.+.+|+++++ ++.+++++ +++| +|  ++++|||+||++|++|++++++.++|+++|+++|
T Consensus       263 ---G~ts~a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l~L~~~E~~~l  338 (375)
T 7mdh_A          263 ---GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERI  338 (375)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCCCCCHHHHHHH
Confidence               566553 44555566666665443 23588887 7899 68  4799999999999999999996249999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 020049          313 EKAKKELAGSIQKGISFS  330 (332)
Q Consensus       313 ~~sa~~l~~~~~~~~~~~  330 (332)
                      ++|+++|+++.+.+.+++
T Consensus       339 ~~Sa~~L~~e~~~~~~~~  356 (375)
T 7mdh_A          339 KKSEAELLAEKKCVAHLT  356 (375)
T ss_dssp             HHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998876665

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=1.5e-59  Score=442.00  Aligned_cols=303  Identities=23%  Similarity=0.331  Sum_probs=260.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-----i~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      +|+||+|+||+|+||+++++.|+.++++++     |+|+|+++    ++|.++||.|+.+. .+..+..+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~-~~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP-LLKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT-TEEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhc-ccCCEEEcCCcHHHhCCC
Confidence            468999999779999999999999888777     99999974    57999999997532 223222234668999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCc-EEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-eh
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  167 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a-~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~  167 (332)
                      |+||++||.|+++|++|.|++..|+++++++++.+.+++|++ |+|++|||+|++|+++    ++.++++|+++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~----~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH----HHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999987 7999999999999875    56665445556776 99


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCcee-EEEecCCCceeecccCCCC--CC-CC------CHHHH--HHHHHHHhccchhhhh
Q 020049          168 LDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP--PC-SF------TQEET--EYLTNRIQNGGTEVVE  235 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v--~~-~~------~~~~~--~~l~~~v~~~~~~i~~  235 (332)
                      ||+.|+++++|+++|++|++|+++ ||||||+ +++|+||++++  .+ ++      .++.|  +++.+++++++++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999999 99999999974  22 22      23333  5899999999999998


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeC-CC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 020049          236 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  311 (332)
Q Consensus       236 ~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~  311 (332)
                      .+  ++++.|++|.++++++++|++|++. +.+++++ +++| +|  ++++|||+||++ ++|++++++.++|+++|+++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~~-~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l~L~~~E~~~  311 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGLPINDFSREK  311 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCCCCCHHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCCCCCHHHHHH
Confidence            64  3568899999999999999999753 2488887 6799 99  479999999999 99999999723999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhc
Q 020049          312 LEKAKKELAGSIQKGISFSK  331 (332)
Q Consensus       312 l~~sa~~l~~~~~~~~~~~~  331 (332)
                      |++|++.|+++++.++++++
T Consensus       312 l~~sa~~L~~~~~~~~~~l~  331 (333)
T 5mdh_A          312 MDLTAKELAEEKETAFEFLS  331 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999886

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.9e-59  Score=437.86  Aligned_cols=292  Identities=24%  Similarity=0.396  Sum_probs=264.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ||+|||| |+||+++++.++..++ .||+|+|+++  +++.++|+.|..    ...++..   ++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG---SNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEE---CCCH-HHhCCCCEEEEe
Confidence            7999999 9999999999988888 7999999998  688899998863    2334553   3575 899999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      +|.|+++|++|.|++.+|++++++++++++++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM----YKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999998654    67789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCC-chhhHHH
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAG-SATLSMA  248 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg-~~~~s~a  248 (332)
                      +++|+++|++|++|++++||+||+ +++|+||++++.+ +    ++++.++++.++++++++++++   +|| ++.||+|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE---LRGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHH---HHSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhh---CCCCccHHHHH
Confidence            999999999999999999999999 9999999998743 1    5777899999999999999998   568 8999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 020049          249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  326 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~  326 (332)
                      .++++++++|++|++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.++..
T Consensus       227 ~a~~~~~~ai~~~~~---~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  302 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK---RIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETL  302 (308)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhCCC---cEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999975   588875 789998 57999999999999999999995 999999999999999999999987


Q ss_pred             hhhhc
Q 020049          327 ISFSK  331 (332)
Q Consensus       327 ~~~~~  331 (332)
                      .+.+.
T Consensus       303 ~~~l~  307 (308)
T 2d4a_B          303 PPQLR  307 (308)
T ss_dssp             CHHHH
T ss_pred             HHHhc
Confidence            66553

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=3.3e-59  Score=436.60  Aligned_cols=290  Identities=22%  Similarity=0.338  Sum_probs=261.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||+|||| |++|++++..|+..++.+||+|+|+++  +++.++||.|... ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999999 999999999999999888999999987  6788999999752 12333322  35 688999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~  176 (332)
                      .|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~----~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA----YALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH----HHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998764    67789999999999 99999999999


Q ss_pred             HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +|+++|++|++|+++|||+||+ +++|+||++++.+            .++++.++++.++++++++++++   +||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCCcH
Confidence            9999999999999999999999 9999999987632            14666789999999999999998   568999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  322 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~  322 (332)
                      |++|.++++++++|++|++   .+++++ +++|+| .+++++|+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       229 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  304 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDEK---GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEA  304 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999965   477775 789998 46899999999999999999995 99999999999999999999


Q ss_pred             HHHh
Q 020049          323 IQKG  326 (332)
Q Consensus       323 ~~~~  326 (332)
                      ++..
T Consensus       305 ~~~~  308 (310)
T 2xxj_A          305 AFAL  308 (310)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.2e-60  Score=446.71  Aligned_cols=279  Identities=20%  Similarity=0.266  Sum_probs=253.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC---CCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      +.+||+|||| |.||+++++.++..++..+|+|+|+++  ++|.++||.|...   ..++..   ++|+ ++++|||+||
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---t~d~-~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS---GKDY-SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE---ESSS-CSCSSCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE---cCCH-HHhCCCCEEE
Confidence            4579999999 999999999999999888999999987  6899999998742   233333   4575 5699999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      +++|.|+++|++|.|++.+|+++++++++.+.+++|++|++++|||+|++|+++    ++.+|+|++||||+ |.||+.|
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~----~k~sg~p~~rViG~gt~LDs~R  170 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD----WKLSGLPMHRIIGSGCNLDSAR  170 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEECCTTHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH----HHHhCCCHHHeecccCchhHHH
Confidence            999999999999999999999999999999999999999999999999998764    67789999999999 7999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHH-HHHHHHHhccchhhhhcccCCCchhhHHHH--
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET-EYLTNRIQNGGTEVVEAKAGAGSATLSMAY--  249 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~-~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~--  249 (332)
                      +++++|+++|++|++|+++|||+||+ +++|+||+          +| +++.+++++++++|++   +||+++||+|.  
T Consensus       171 ~~~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~----------~~~~~~~~~v~~~g~eii~---~kg~t~~a~a~~~  236 (330)
T 3ldh_A          171 FRYLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSG----------MWDAKLHKDVVDSAYEVIK---LKGYTSWAIGLVV  236 (330)
T ss_dssp             HHHHHHHHHTSCTTTCCEEECSSSST-TCCEEEEE----------EEETTEEHHHHHCCCTTST---TCHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHeEEEEEcCCCC-ceeeechh----------hHHHHHHHHHHHHHHHHHH---ccCCcceeeeeec
Confidence            99999999999999999999999999 99999998          23 6788899999999998   56899999999  


Q ss_pred             ---------------HHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEE--eccCCCCCHHHH
Q 020049          250 ---------------AAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEE--IFQLGPLNEYER  309 (332)
Q Consensus       250 ---------------a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~--i~~~~~L~~~E~  309 (332)
                                     ++++++++|++|++   .+++++ +++|+|  ++++|||+||++| +|+++  ++++ +|+++|+
T Consensus       237 ~~~~~~~~~~~~~~~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~  311 (330)
T 3ldh_A          237 SNPVDVLTYVAWKGCSVADLAQTIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEE  311 (330)
T ss_dssp             HHHHTTSSSCSCTHHHHHHHHHHHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHH
T ss_pred             cCccchhhhhhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHH
Confidence                           99999999999865   588887 789999  4599999999999 99999  9995 9999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020049          310 IGLEKAKKELAGSIQK  325 (332)
Q Consensus       310 ~~l~~sa~~l~~~~~~  325 (332)
                      ++|++|++.|++.++.
T Consensus       312 ~~l~~s~~~l~~~~~~  327 (330)
T 3ldh_A          312 QQLQKSATTLWDIQKD  327 (330)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=1.1e-58  Score=434.68  Aligned_cols=294  Identities=22%  Similarity=0.360  Sum_probs=260.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++++||+|||| |++|++++..|+..++..+|+|+|+++  +++.++|+.|...  ...++...  .+ +++++|||+||
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVv   79 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVV   79 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEE
Confidence            35689999999 999999999999888888999999987  6788899887531  12334332  24 68899999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      +++|.|+++|++|.|++.+|+++++++++.|.++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~----~~k~~~~p~~rviG~gt~lD~~r  155 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYA----TWKFSGLPKERVIGSGTILDSAR  155 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHH----HHHHhCCCHHHEEecCccccHHH
Confidence            99999999999999999999999999999999999999999999999999865    478889999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCc
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  242 (332)
                      +++++|+++|++|++|+++|||+||+ +++|+||++++.+          .++++.++++.++++++++++++   +||+
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  231 (317)
T 3d0o_A          156 FRLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGA  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSC
T ss_pred             HHHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCC
Confidence            99999999999999999999999999 9999999988642          14455678999999999999998   5689


Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       243 ~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      ++|++|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  307 (317)
T 3d0o_A          232 TYYGVAMGLARITEAIFRNED---AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLK  307 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999965   477775 789998 44999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 020049          321 GSIQKGI  327 (332)
Q Consensus       321 ~~~~~~~  327 (332)
                      +.++...
T Consensus       308 ~~~~~~~  314 (317)
T 3d0o_A          308 DIMAEAE  314 (317)
T ss_dssp             HHHHC--
T ss_pred             HHHHHHH
Confidence            9998654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=7e-58  Score=426.68  Aligned_cols=290  Identities=26%  Similarity=0.365  Sum_probs=260.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc--CC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~--~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      |||+||||+|++|++++..|+..++..|++|+|+  ++  +++.++|+.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999669999999999998888889999999  66  4677889988632 22333322  24 6889999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      +|.|+++|++|.|++.+|+++++++++.+++++|++|++++|||+|++|++    +++.+++|++||+|+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~----~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHH----HHHHcCCCHHHeeecccchhHHHHH
Confidence            999999999999999999999999999999999999999999999999865    478889999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC--CC-CHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHH
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC--SF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAA  251 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~--~~-~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~  251 (332)
                      +++|+++|++|++|+++|||+||+ +++|+||.+.+..  .+ ++++++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHH
Confidence            999999999999999999999999 9999999987521  44 788899999999999999998   6789999999999


Q ss_pred             HHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          252 VKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       252 ~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      ++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++
T Consensus       230 ~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  301 (303)
T 1o6z_A          230 AHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK  301 (303)
T ss_dssp             HHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC---CEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999975   477775 789998 57899999999999999999995 99999999999999999999875

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2e-58  Score=432.82  Aligned_cols=293  Identities=23%  Similarity=0.354  Sum_probs=253.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +++||+|||| |+||++++..|+..++.+||+|+|+++  +++.++|+.|... ...++..  .++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~--~~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE--ECC-HHHhCCCCEEEEc
Confidence            4579999999 999999999999999889999999998  6789999998752 2345543  235 6889999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      +|.|+++|++|.|++.+|+++++++++.|.+++|++|+|++|||+|++|+++    ++.+++|++||||+ |.||+.|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~----~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH----HHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999998664    67789999999999 999999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----CC--------CHHHHHHHHHHHhccchhhhhcccCCCc
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----SF--------TQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~~--------~~~~~~~l~~~v~~~~~~i~~~~~~kg~  242 (332)
                      +++|+++|++|++|+++|||+||+ +++|+||++++.+    .+        +++.++++.++++++++++++   +||+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCc
Confidence            999999999999999999999999 9999999987531    11        233468999999999999998   5689


Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       243 ~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      ++|++|.++++++++|++|++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       234 t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  309 (318)
T 1y6j_A          234 TYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVK  309 (318)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999965   477775 789998 57899999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 020049          321 GSIQKGI  327 (332)
Q Consensus       321 ~~~~~~~  327 (332)
                      +.++.+.
T Consensus       310 ~~~~~~~  316 (318)
T 1y6j_A          310 KVLNEVK  316 (318)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            9998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=9.3e-58  Score=426.95  Aligned_cols=292  Identities=28%  Similarity=0.458  Sum_probs=255.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++||+|||| |+||++++..|+..++. +|+|+|+++  +++.++|+.|..    ...++..   ++|+ ++++|||+||
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d~-~a~~~aD~Vi   75 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNNY-ADTANSDVIV   75 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCC-eEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEE---CCCH-HHHCCCCEEE
Confidence            369999999 99999999999998875 499999988  678889998863    2234553   3576 8899999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      +++|.|+++|++|.|++.+|+++++++++.+++++|++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|
T Consensus        76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~----~~~~~~~~~rviG~gt~LD~~r  151 (309)
T 1ur5_A           76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIGQAGVLDAAR  151 (309)
T ss_dssp             ECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCHHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH----HHHcCCCHHHEEECCcchHHHH
Confidence            999999999999999999999999999999999999999999999999998654    67789999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----CCCHHHHHHHHHHHhccchhhhhcccCCCchhhHH
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  247 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~  247 (332)
                      +++++|+++|++|++|+++|||+||+ +++|+||++++.+     .+++++++++.++++++++++++. .+||++.||+
T Consensus       152 ~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~  229 (309)
T 1ur5_A          152 YRTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAP  229 (309)
T ss_dssp             HHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHH
T ss_pred             HHHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHH
Confidence            99999999999999999999999998 9999999987642     257788999999999999999985 3568999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHH
Q 020049          248 AYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK  325 (332)
Q Consensus       248 a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~  325 (332)
                      |.++++++++|++|++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+++
T Consensus       230 a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~  305 (309)
T 1ur5_A          230 AAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT  305 (309)
T ss_dssp             HHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999975   588875 789998 57999999999999999999995 99999999999999999999987


Q ss_pred             hh
Q 020049          326 GI  327 (332)
Q Consensus       326 ~~  327 (332)
                      ..
T Consensus       306 ~~  307 (309)
T 1ur5_A          306 LK  307 (309)
T ss_dssp             HC
T ss_pred             Hh
Confidence            54

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=9e-58  Score=428.30  Aligned_cols=293  Identities=21%  Similarity=0.337  Sum_probs=261.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +++||+|||| |.||++++..|+..++..+|+|+|+++  +++.++|+.|....  ..++...  .+ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999999 999999999998888888999999987  57788899886421  1344332  24 588999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      +++.++++|++|.|++.+|.++++++++.+++++|++|++++|||+|++|+++    ++.+++|++||||+ |.||+.|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~----~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH----HHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999998764    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----C-------CCHHHHHHHHHHHhccchhhhhcccCCCc
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  242 (332)
                      ++++|+++|++|++|+++|||+||+ +++|+||++++.+    .       ++++.++++.++++++++++++   +||+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKGA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccCC
Confidence            9999999999999999999999999 9999999987531    1       3455678999999999999998   5689


Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       243 ~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      ++|++|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       233 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  308 (316)
T 1ldn_A          233 TYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLK  308 (316)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999965   477775 789998 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 020049          321 GSIQKGI  327 (332)
Q Consensus       321 ~~~~~~~  327 (332)
                      +.+++.+
T Consensus       309 ~~~~~~~  315 (316)
T 1ldn_A          309 SVLARAF  315 (316)
T ss_dssp             HHHHHSC
T ss_pred             HHHHHHh
Confidence            9998753

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=2e-57  Score=422.78  Aligned_cols=284  Identities=17%  Similarity=0.240  Sum_probs=246.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +++||+|||| |+||+++++.++..++.++|+|+|+++ +.+.++|+.|... +++..   ++|+ ++++|||+||+++|
T Consensus        13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~-~~i~~---t~d~-~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL-PNVEI---SKDL-SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC-TTEEE---ESCG-GGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC-CCeEE---eCCH-HHHCCCCEEEEcCC
Confidence            4579999999 999999999999988889999999988 6788889988543 45664   3576 88999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~  176 (332)
                      .+ ++|++|.|++.+|++++++++++++++||++|+|++|||+|++|++    +++.+++|++||||+ |.||+.|++++
T Consensus        87 ~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~----~~~~~~~p~~rviG~gt~Ld~~R~~~~  161 (303)
T 2i6t_A           87 SL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYV----TWKLSTFPANRVIGIGCNLDSQRLQYI  161 (303)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHHHHHHH
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHH----HHHhcCCCHHHeeCCCCCchHHHHHHH
Confidence            96 7999999999999999999999999999999999999999999765    478899999999999 99999999999


Q ss_pred             HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchhhHHHHHHHHHHH
Q 020049          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  256 (332)
Q Consensus       177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a~a~~~ii~  256 (332)
                      +|+++|++|++|+++|||+||+ +++|+||....   +.   .+++.++++++++++++   +||++.||+|.+++++++
T Consensus       162 la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~~---~~---~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~  231 (303)
T 2i6t_A          162 ITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQEE---VV---SHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVD  231 (303)
T ss_dssp             HHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSSC---CC---CHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCChHHeEEEEecCCCC-Ccccccccccc---cc---HHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHH
Confidence            9999999999999999999998 99999999631   21   24677778889999988   678999999999999999


Q ss_pred             HHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 020049          257 ACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  326 (332)
Q Consensus       257 ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~  326 (332)
                      +|++|++   .+++++ +++|+|  ++++|||+||++|++|+++++++++|+++|+++|++|++.|++.++..
T Consensus       232 ai~~~~~---~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~  301 (303)
T 2i6t_A          232 SIVNNKK---KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL  301 (303)
T ss_dssp             HHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCC---cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999986   477775 789998  579999999999999999998866899999999999999999998753

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=5.1e-57  Score=422.73  Aligned_cols=294  Identities=24%  Similarity=0.404  Sum_probs=254.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc--CC--cHHHHHHHhcCC-CC-CeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VN--TPGVTADISHMD-TG-AVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~--~~--~~~~~~dl~~~~-~~-~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+||||+|++|++++..|+..++..+++|+|+  ++  +++.++|+.|.. .. ..+.....+.+++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999999999999999998888889999999  65  567888988753 11 222322112126799999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      ++|.|+++|++|.|++.+|+++++++++.+++++ ++|++++|||+|++|+++    ++.+++|++|+||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~----~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA----LVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH----HHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH----HHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999998764    67789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----C---CCHHHHHHHHHHHhccchhhhhcccCCCchhhH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  246 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~---~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s  246 (332)
                      ++++|+++|+++++|++++||+||+ +++|+||++++.+    .   ++++.++++.++++++++++++   +||++.||
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            9999999999999999999999999 9999999988642    2   2556689999999999999998   67899999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-C-CccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          247 MAYAAVKFADACLRGLRGDAGVVECA-FVASQV-T-ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       247 ~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~-~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      +|.++++++++|++|++   .+++++ +++|+| . ++++||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       232 ~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  307 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYC  307 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC---eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999975   477775 789998 3 5999999999999999999995 999999999999999999999


Q ss_pred             HHhh
Q 020049          324 QKGI  327 (332)
Q Consensus       324 ~~~~  327 (332)
                      +...
T Consensus       308 ~~~~  311 (313)
T 1hye_A          308 EEVK  311 (313)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=8.9e-56  Score=415.44  Aligned_cols=290  Identities=29%  Similarity=0.467  Sum_probs=259.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++||+|||| |++|++++..|+..++. +|+|+|+++  +++.++|+.+..    ...++..   ++|+ ++++|||+||
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~-~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLG-DVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNTY-DDLAGADVVI   77 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            469999999 99999999999999885 499999988  677788887752    2344553   3576 8999999999


Q ss_pred             EcCCCCCCCCCC-----hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-eh
Q 020049           94 IPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  167 (332)
Q Consensus        94 ~~~g~~~~~g~~-----r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~  167 (332)
                      +++|.|+++|++     |.|++.+|+++++++++.|+++||++|+|++|||++++|+++    ++.++||++||+|+ |.
T Consensus        78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~----~~~~g~~~~rviG~gt~  153 (322)
T 1t2d_A           78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGLGGV  153 (322)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEECCHH
T ss_pred             EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH----HHhcCCChHHEEeccCc
Confidence            999999999999     999999999999999999999999999999999999998654    66789999999999 69


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcc
Q 020049          168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~  237 (332)
                      ||++|+++++|+++|+++++|+++|||+||+ +++|+||.+.+..          .++++.++++.+++++++++|++. 
T Consensus       154 ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~-  231 (322)
T 1t2d_A          154 LDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL-  231 (322)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH-
T ss_pred             ccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc-
Confidence            9999999999999999999999999999999 9999999987631          256677899999999999999984 


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 020049          238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  315 (332)
Q Consensus       238 ~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  315 (332)
                        ||++.||+|.++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|
T Consensus       232 --kgs~~~~~a~a~~~~~~ai~~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s  305 (322)
T 1t2d_A          232 --HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEA  305 (322)
T ss_dssp             --TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             --cCchHHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHHH
Confidence              578999999999999999999975   588875 789999 57999999999999999999995 9999999999999


Q ss_pred             HHHHHHHHHHhh
Q 020049          316 KKELAGSIQKGI  327 (332)
Q Consensus       316 a~~l~~~~~~~~  327 (332)
                      ++.|++.++.+-
T Consensus       306 ~~~L~~~~~~~~  317 (322)
T 1t2d_A          306 IAETKRMKALAH  317 (322)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999988753

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.6e-55  Score=414.82  Aligned_cols=293  Identities=32%  Similarity=0.517  Sum_probs=260.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      +++||+|||| |++|++++..|+..++. +|+|+|+++  +++.++++.+..    ...++..   ++|+ ++++|||+|
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~---t~d~-~al~~aD~V   86 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG---ENNY-EYLQNSDVV   86 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE---CCCH-HHHCCCCEE
Confidence            3479999999 99999999999999885 599999998  566677776653    1234554   4576 899999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHH
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV  171 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~  171 (332)
                      |+++|.|+++|++|.|++.+|++++++++++++++||++|+|++|||++++|+++    ++.+|+|++||+|+ |.||++
T Consensus        87 I~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~----~~~~~~~~~rviG~~t~Ld~~  162 (328)
T 2hjr_A           87 IITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF----KEKSGIPANKVCGMSGVLDSA  162 (328)
T ss_dssp             EECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHH
T ss_pred             EEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHhcCCChhhEEEeCcHHHHH
Confidence            9999999999999999999999999999999999999999999999999997654    67789999999999 599999


Q ss_pred             HHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCC
Q 020049          172 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAG  241 (332)
Q Consensus       172 r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg  241 (332)
                      |+++++|+++|++|++|+++|||+||+ +++|+||++++.+          .+++++++++.++++++++++++.. ++|
T Consensus       163 R~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~g  240 (328)
T 2hjr_A          163 RFRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTG  240 (328)
T ss_dssp             HHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSC
T ss_pred             HHHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCC
Confidence            999999999999999999999999999 9999999987632          1466778899999999999999863 678


Q ss_pred             chhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 020049          242 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  319 (332)
Q Consensus       242 ~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l  319 (332)
                      ++.||+|.++++++++|++|++   .+++++ +++|+| .+++++|+||++|++|+++++.+ +|+++|+++|++|+..|
T Consensus       241 s~~~~~a~a~~~i~~ai~~~~~---~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l  316 (328)
T 2hjr_A          241 SAFYAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESI  316 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999975   578775 789998 57999999999999999999995 99999999999999999


Q ss_pred             HHHHHHhh
Q 020049          320 AGSIQKGI  327 (332)
Q Consensus       320 ~~~~~~~~  327 (332)
                      ++.++.+.
T Consensus       317 ~~~~~~~~  324 (328)
T 2hjr_A          317 QNLVQDLK  324 (328)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998775

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=2.8e-55  Score=413.62  Aligned_cols=294  Identities=31%  Similarity=0.507  Sum_probs=260.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ++|||+|||| |++|++++..|+..++. +|+|+|+++  +++.+.++.|..    ...++..   ++|++++++|||+|
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~aDiV   82 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   82 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCCCEE
Confidence            4579999999 99999999999988874 599999998  566667776642    2234554   46887799999999


Q ss_pred             EEcCCCCCCCCC-----ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-e
Q 020049           93 IIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T  166 (332)
Q Consensus        93 i~~~g~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~  166 (332)
                      |+++|.|+++|+     +|.|++.+|+++++++++.|+++||++|+|++|||++++|+++    ++.+++|++||+|+ |
T Consensus        83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~----~~~~~~~~~rviG~gt  158 (331)
T 1pzg_A           83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGMAC  158 (331)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEECCH
T ss_pred             EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH----HHhcCCChhcEEeccc
Confidence            999999999999     9999999999999999999999999999999999999997654    67789999999999 7


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhc
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  236 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~  236 (332)
                      .||+.|+++++|+++|++|++|+++|||+||+ +++|+||++++.+          .++++.++++.++++++++++++.
T Consensus       159 ~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~  237 (331)
T 1pzg_A          159 MLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRF  237 (331)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHh
Confidence            99999999999999999999999999999999 9999999987632          146667889999999999999984


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          237 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       237 ~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                      . ++|++.||+|.++++++++|++|++   .+++++ +++|+| .++++||+||++|++|+++++.+ +|+++|+++|++
T Consensus       238 ~-~kgst~~~~a~a~~~ii~ai~~~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~  312 (331)
T 1pzg_A          238 L-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQK  312 (331)
T ss_dssp             H-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             h-cCCCccchHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHH
Confidence            2 5689999999999999999999975   588875 789998 57999999999999999999995 999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 020049          315 AKKELAGSIQKGI  327 (332)
Q Consensus       315 sa~~l~~~~~~~~  327 (332)
                      |++.|++.++...
T Consensus       313 s~~~l~~~~~~~~  325 (331)
T 1pzg_A          313 SVDDVMALNKAVA  325 (331)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.9e-54  Score=407.94  Aligned_cols=299  Identities=22%  Similarity=0.304  Sum_probs=258.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEccC----C--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----N--TPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~-----~ei~L~D~~----~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (332)
                      ++|||+||||+|++|++++..|+..++.     .+|+|+|++    +  +++.++||.|..... ...+..+++++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            4689999998899999999999988764     499999998    5  578899999964222 222222467889999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~  165 (332)
                      |||+||+++|.++++|++|.|++.+|+++++++++.++++| |++|+|++|||+|++|+++    ++.+ +||++|++|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~----~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA----MKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH----HHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999998 9999999999999998765    5666 9999999999


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCce-eEEEecCCCceeecccCCCCCC-C----CCHHH--HHHHHHHHhccchhhhhcc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~  237 (332)
                      |.||+.|+++++|+++|++|++|+. +|||+||+ +++|+||++++.+ +    +++++  .+++.+++++++++|++.|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999985 68999999 9999999998753 2    23334  4789999999999999965


Q ss_pred             cCCCchh-hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEecc-CCCCCHHHHHHH
Q 020049          238 AGAGSAT-LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQ-LGPLNEYERIGL  312 (332)
Q Consensus       238 ~~kg~~~-~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~-~~~L~~~E~~~l  312 (332)
                         |.++ ++.|.++++++++|++|..+  .+++++ +++|+|  ++++|||+||++ ++|++++++ + +|+++|+++|
T Consensus       238 ---g~~~~~~~a~a~~~~~~ai~~~~~~--~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~~l  310 (329)
T 1b8p_A          238 ---GVSSAASAANAAIDHIHDWVLGTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQERI  310 (329)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHHCCTT--CCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHH
T ss_pred             ---CCChHHHHHHHHHHHHHHHhcCCCC--cEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHHHH
Confidence               3444 44677899999999998421  377775 789998  589999999999 999999998 6 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 020049          313 EKAKKELAGSIQKGISFS  330 (332)
Q Consensus       313 ~~sa~~l~~~~~~~~~~~  330 (332)
                      ++|++.|++.++.+.+++
T Consensus       311 ~~s~~~l~~~~~~~~~~~  328 (329)
T 1b8p_A          311 NVTLNELLEEQNGVQHLL  328 (329)
T ss_dssp             HHHHHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999999998765

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=3.5e-54  Score=403.00  Aligned_cols=293  Identities=30%  Similarity=0.492  Sum_probs=259.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||| |.+|++++..|+..+...+|+|+|+++  +++..+|+.+..    ...++..   ++|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SNDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEE---CCCH-HHHCCCCEEEE
Confidence            69999999 999999999999876556999999988  566777777652    1234443   3576 45999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~  173 (332)
                      +++.|+++|++|.|++.+|+++++++++.+++++|+++++++|||++.++++    +++.+++|++|++|+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~----~~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHV----AWVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHH----HHHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHH----HHHhcCCChHHEEECCCchHHHHH
Confidence            9999999999999999999999999999999999999999999999999765    467789999999999 99999999


Q ss_pred             HHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CCHHHHHHHHHHHhccchhhhhcccCCCchhhHHH
Q 020049          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMA  248 (332)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~~s~a  248 (332)
                      ++++|+++|+++++|++++||+||+ +++|+||++++.. +    +++++++++.++++++++++++. .+||++.||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999998 9999999998743 1    56778999999999999999985 35689999999


Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 020049          249 YAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKG  326 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~  326 (332)
                      .++++++++|++|++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.+
T Consensus       230 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  305 (310)
T 1guz_A          230 SSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKML  305 (310)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999975   588875 789998 57999999999999999999995 999999999999999999999876


Q ss_pred             hh
Q 020049          327 IS  328 (332)
Q Consensus       327 ~~  328 (332)
                      .+
T Consensus       306 ~~  307 (310)
T 1guz_A          306 ES  307 (310)
T ss_dssp             --
T ss_pred             hh
Confidence            54

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=6.7e-54  Score=400.03  Aligned_cols=285  Identities=25%  Similarity=0.339  Sum_probs=228.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||+|||| |++|++++..|+..++..+|+|+|+++  +++.++|+.|... ....+...  ++ ++++++||+||++++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            59999999 999999999999999888999999987  5677888887652 12233221  35 478999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~~~  176 (332)
                      .|+++|++|.|++.+|+++++++++.+.+++|++|++++|||++++++++    ++.+  |++||+|+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~----~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA----TQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH----HHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH----HHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998654    5554  89999999 99999999999


Q ss_pred             HHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       177 la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +|+++|+++++|++++||+||+ +++|+||++++.+            .++++.++++.+++++++++|++   +||+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcH
Confidence            9999999999999999999999 9999999998742            14666789999999999999998   678999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      |++|.++++++++|++|++   .+++++ +++| |.  +|||+||++|++|+++++++ +|+++|+++|++|++.|++.+
T Consensus       227 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g-yg--~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  299 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDRR---AVLTVSAPTPE-YG--VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFK  299 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEETT-TT--EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEEECC-cC--cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999965   477775 7899 84  99999999999999999995 999999999999999999988


Q ss_pred             HHh
Q 020049          324 QKG  326 (332)
Q Consensus       324 ~~~  326 (332)
                      ++.
T Consensus       300 ~~~  302 (304)
T 2v6b_A          300 QQL  302 (304)
T ss_dssp             ---
T ss_pred             HHh
Confidence            753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.8e-51  Score=384.87  Aligned_cols=288  Identities=27%  Similarity=0.444  Sum_probs=254.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC---CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      |||+|||+ |.+|++++..|+..++..+|+|+|+++  +++...++.+...   ...+..   + | ++++++||+||++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~-d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---G-D-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---C-C-GGGGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---C-C-HHHhCCCCEEEEc
Confidence            69999999 999999999999888777999999987  4555666654321   123332   3 5 4789999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r~~  174 (332)
                      ++.++++|++|.|++.+|+++++++++.|++++|++++|++|||++++++++    ++.+++|++||+|+ |.||+.|++
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r~~  150 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGSGTVLDTARLR  150 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH----HHHhCCChhhEEeeCccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999997654    56678999999999 799999999


Q ss_pred             HHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------C-CCHHHHHHHHHHHhccchhhhhcccCCCch
Q 020049          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------S-FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (332)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~-~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~  243 (332)
                      +.+|+++|++|++++++|||+||+ +++|+||.+++.+          . ++++.++++.++++++++++++   +||++
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~  226 (319)
T 1a5z_A          151 TLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGAT  226 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCC
T ss_pred             HHHHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhc---cCCch
Confidence            999999999999999999999999 9999999987632          1 4666788999999999999998   56889


Q ss_pred             hhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHH
Q 020049          244 TLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAG  321 (332)
Q Consensus       244 ~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~  321 (332)
                      .|++|.++++++++|++|++   .+++++ +++|+| .++++||+||++|++|+++++.+ +|+++|+++|++|++.|++
T Consensus       227 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  302 (319)
T 1a5z_A          227 HYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKN  302 (319)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999965   477775 789998 57899999999999999999995 9999999999999999999


Q ss_pred             HHHHh
Q 020049          322 SIQKG  326 (332)
Q Consensus       322 ~~~~~  326 (332)
                      .++.+
T Consensus       303 ~~~~~  307 (319)
T 1a5z_A          303 AINEI  307 (319)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1.1e-48  Score=367.02  Aligned_cols=292  Identities=30%  Similarity=0.470  Sum_probs=255.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++||+|||| |.+|++++..|+..|+. +|+|+|+++  +++..+|+.+..    ...++..   ++|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG---TDDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE---ESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE---CCCH-HHhCCCCEEE
Confidence            479999999 99999999999988864 699999987  455556665532    1234543   3576 8899999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      +++|.|+++|++|.|++.+|.++++++++++++++|+++++++|||++++++.+    ++.+++|++||+|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~----~~~~~~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF----QKVSGLPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHCCCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH----HHhhCCCHHHEEeccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999997654    56778999999999 6999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhcccCCCc
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~  242 (332)
                      +++.+++++|+++++++++|+|+||+ +++|+|+.+++.+          .++.++++++.+.++.++++++++. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            99999999999999999999999998 9999999986532          2466778888888888999998863 6789


Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHH
Q 020049          243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELA  320 (332)
Q Consensus       243 ~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~  320 (332)
                      +.|++|.++++++++|++|++   .+++++ +++|+| .+++|+|+||++|++|+++++.+ +|+++|+++|++|+..|+
T Consensus       232 ~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~  307 (317)
T 2ewd_A          232 AYFAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVN  307 (317)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---eEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999875   477775 789999 57999999999999999999995 999999999999999999


Q ss_pred             HHHHHhh
Q 020049          321 GSIQKGI  327 (332)
Q Consensus       321 ~~~~~~~  327 (332)
                      +.+++..
T Consensus       308 ~~~~~~~  314 (317)
T 2ewd_A          308 TISKVLD  314 (317)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.7e-49  Score=369.82  Aligned_cols=290  Identities=19%  Similarity=0.259  Sum_probs=247.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||+ |.+|++++..|+..++..+|+|+|+++  +++.+.++.|...  ...++..  ++|+ +++++||+||+++
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEec
Confidence            69999998 999999999998888545999999987  4566666654321  1223332  2466 8899999999999


Q ss_pred             CCCCC----CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHH
Q 020049           97 GVPRK----PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV  171 (332)
Q Consensus        97 g~~~~----~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~  171 (332)
                      +.+++    +|++|.|++.+|+++++++++.+.+++|+++++++|||+++++++    +++.+++|++|++|+ |.||+.
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~----~~~~~~~~~~rvig~gt~ld~~  153 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITAL----FQHVTGFPAHKVIGTGTLLDTA  153 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHH----HHHHHCCCGGGEEECTTHHHHH
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHH----HHHhcCCCHHHEeecCccchHH
Confidence            99988    999999999999999999999999999999999999999998755    467788999999999 999999


Q ss_pred             HHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C------CCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          172 RANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       172 r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      |++..+++.+++++++++++++|+||+ +++|+||++.+.. +      ++++.|+++.++++++++++++.   ||++.
T Consensus       154 r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~~  229 (309)
T 1hyh_A          154 RMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYTS  229 (309)
T ss_dssp             HHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSCC
T ss_pred             HHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCch
Confidence            999999999999999999999999999 9999999987642 1      45667899999999999999984   57899


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI  323 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~  323 (332)
                      |++|.++++++++|++|++   .+++++ +++|   +++++|+||++|++|+++++.+ +|+++|+++|++|++.|++.+
T Consensus       230 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  302 (309)
T 1hyh_A          230 YGVATSAIRIAKAVMADAH---AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRF  302 (309)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999976   477775 7788   7999999999999999999995 999999999999999999999


Q ss_pred             HHhhhh
Q 020049          324 QKGISF  329 (332)
Q Consensus       324 ~~~~~~  329 (332)
                      +...+.
T Consensus       303 ~~~~~~  308 (309)
T 1hyh_A          303 DEIVDT  308 (309)
T ss_dssp             HHHHTT
T ss_pred             HHHhhh
Confidence            987653

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=1.1e-45  Score=347.80  Aligned_cols=300  Identities=23%  Similarity=0.351  Sum_probs=251.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~-----~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      ++|||+|+||+|++|++++..|+..++.     .+|+++|+++    ..+.++|+.|..... +..+..+.+++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~-~~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc-cCCeEeccChHHHhCCC
Confidence            3579999999999999999999888764     3999999874    456778898864211 22222235678999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEeeh
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGVTM  167 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~~~  167 (332)
                      |+||++||.+++++++|.+++..|+.+++++++.+++++ |+++++++|||++.++++.    ++.+ ++|+.+++|.|.
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~----~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA----YKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH----HHHcCCCChhheeccch
Confidence            999999999999999999999999999999999999998 9999999999998887653    4555 788999999999


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCCC----C-CCHHH-HHHHHHHHhccchhhhhcccCC
Q 020049          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-FTQEE-TEYLTNRIQNGGTEVVEAKAGA  240 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~----~-~~~~~-~~~l~~~v~~~~~~i~~~~~~k  240 (332)
                      ++++|+.+.+++.+|+++..++ ..|||+|++ +++|.|++..+.+    . ++++. ++++.+++++++++|++.|   
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k---  233 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR---  233 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc---
Confidence            9999999999999999999998 578999998 9999999887632    1 23322 4789999999999999965   


Q ss_pred             Cchh-hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHH
Q 020049          241 GSAT-LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAK  316 (332)
Q Consensus       241 g~~~-~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa  316 (332)
                      |.++ +++|.++++++++|++|++. +.+++++ +++|+|  ++++|||+||++ ++|++++++.++|+++|+++|++|+
T Consensus       234 g~~~~~~~a~a~~~~~~~i~~~~~~-~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~~l~~~e~~~l~~s~  311 (327)
T 1y7t_A          234 GASSAASAANAAIEHIRDWALGTPE-GDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGLEINEFARKRMEITA  311 (327)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHTBCCT-TCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCCCCCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCCC-CeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCCCCCHHHHHHHHHHH
Confidence            3444 46788999999999999631 2477775 789998  589999999999 9999999883399999999999999


Q ss_pred             HHHHHHHHHhhhh
Q 020049          317 KELAGSIQKGISF  329 (332)
Q Consensus       317 ~~l~~~~~~~~~~  329 (332)
                      +.|++.++.+.++
T Consensus       312 ~~l~~~~~~~~~~  324 (327)
T 1y7t_A          312 QELLDEMEQVKAL  324 (327)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988653

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=5.4e-44  Score=345.15  Aligned_cols=287  Identities=14%  Similarity=0.084  Sum_probs=227.0

Q ss_pred             CCeEEEEcCCCchHHHH--HHHHHh--CCC-CcEEEEEccCC--cHHHHHHHhcCC--CCCeEEEEeCCCCHHhhcCCCc
Q 020049           20 GFKVAILGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMD   90 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~--a~~l~~--~~~-~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD   90 (332)
                      ++||+|||| |++ .+.  +..|+.  .++ .+||+|+|+++  +++ +.++.+..  ...++..   ++|++++++|||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~-~~~~~~~~~~~~~~v~~---t~d~~~al~~AD   75 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVLI---SDTFEGAVVDAK   75 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEEE---CSSHHHHHTTCS
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHH-HHHHHHHHhhCCeEEEE---eCCHHHHhCCCC
Confidence            579999999 776 332  334555  566 78999999988  232 44554421  1133443   568889999999


Q ss_pred             EEEEcCCCCCCCCCChh-------h-------------hHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHH
Q 020049           91 LVIIPAGVPRKPGMTRD-------D-------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~-------~-------------~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                      |||+++|.+++++++|+       +             ++.+|+++++++++.|+++| +||+|++|||+|++|++    
T Consensus        76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a----  150 (417)
T 1up7_A           76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEF----  150 (417)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHH----
T ss_pred             EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHH----
Confidence            99999999988877763       2             35899999999999999999 99999999999999865    


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-----------ecCCCceeecccCC---CCCC----
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQV---KPPC----  212 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~s~~---~v~~----  212 (332)
                      +++.+  |++||||+|+.. .|+++.+|+.+|++|++|+++++|           +||+ +++|.||..   ++.+    
T Consensus       151 ~~k~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~  226 (417)
T 1up7_A          151 VRNYL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDE  226 (417)
T ss_dssp             HHHTT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTT
T ss_pred             HHHhC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCC
Confidence            46764  778999998654 499999999999999999999999           9999 999999985   3311    


Q ss_pred             CC---------------------CHHHHHHH---------HHHHhccchhhh--------hcccCCCchhhHHHHHHHHH
Q 020049          213 SF---------------------TQEETEYL---------TNRIQNGGTEVV--------EAKAGAGSATLSMAYAAVKF  254 (332)
Q Consensus       213 ~~---------------------~~~~~~~l---------~~~v~~~~~~i~--------~~~~~kg~~~~s~a~a~~~i  254 (332)
                      ++                     +++.++++         .+++++.+++++        ++ .++|++.|  +.+++++
T Consensus       227 ~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~i  303 (417)
T 1up7_A          227 DFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHL  303 (417)
T ss_dssp             SCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHH
T ss_pred             chHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHH
Confidence            22                     12333444         466677778887        22 24566655  6899999


Q ss_pred             HHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 020049          255 ADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS  328 (332)
Q Consensus       255 i~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~~~~~  328 (332)
                      ++||++|++   .+++++ +++|+|   |+|+++|+||+||++|++++... +|+++|+++++.++...+..++.+++
T Consensus       304 i~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~-~L~~~e~~~l~~~~~~e~l~veA~~~  377 (417)
T 1up7_A          304 IRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQG-KGDHFALSFIHAVKMYERLTIEAYLK  377 (417)
T ss_dssp             HHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCC---eEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999976   578886 689987   58999999999999999999994 99999999999999999999887754

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=5.3e-43  Score=341.27  Aligned_cols=292  Identities=14%  Similarity=0.134  Sum_probs=226.6

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHh--CCC-CcEEEEEccCC--cHHH-----HHHHh-cCCCCCeEEEEeCCCCHHhhcC
Q 020049           20 GFKVAILGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-----TADIS-HMDTGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~v-G~~~a~~l~~--~~~-~~ei~L~D~~~--~~~~-----~~dl~-~~~~~~~v~~~~~~~d~~~a~~   87 (332)
                      ++||+|||| |++ |..++..|+.  .++ ..||+|+|+++  .+..     ..++. +.....++..   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            479999999 888 7777777776  556 78999999987  3321     22332 2222345554   468889999


Q ss_pred             CCcEEEEcCCCCCCCCCChhh--------------------hHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHH
Q 020049           88 GMDLVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  147 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~--------------------~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~  147 (332)
                      |||+||+++|.++++|++|++                    ++.+|+++++++++.|+++||+||+|++|||+|++|++ 
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a-  161 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEA-  161 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHH-
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-
Confidence            999999999998888777753                    47899999999999999999999999999999999765 


Q ss_pred             HHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-----------ecCCCceeecccCCCCC-----
Q 020049          148 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQVKPP-----  211 (332)
Q Consensus       148 ~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~s~~~v~-----  211 (332)
                         +++.+  |++||||+|+.. .|+++.+|+.+|+++++|+++++|           +||+ +++|.|+.....     
T Consensus       162 ---~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          162 ---VLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ---HHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ---HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence               46764  778999998665 499999999999999999999999           9998 999999873211     


Q ss_pred             --------CCC---------------------CHHHH-------------HHHHHHHhccchhhh-----hccc--CCCc
Q 020049          212 --------CSF---------------------TQEET-------------EYLTNRIQNGGTEVV-----EAKA--GAGS  242 (332)
Q Consensus       212 --------~~~---------------------~~~~~-------------~~l~~~v~~~~~~i~-----~~~~--~kg~  242 (332)
                              .++                     +++.+             .++.+++++.+++++     +.+.  -.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                    011                     12211             244566777788888     3220  0012


Q ss_pred             hhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHH
Q 020049          243 ATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE  318 (332)
Q Consensus       243 ~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~  318 (332)
                      +.+++|.+++++++||++|++   .+++++ .++|+|   |+|+++|+||+||++|++++... +|+++|+++++.++..
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~  390 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSF  390 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcCCC---eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHH
Confidence            334667999999999999986   478886 688987   58999999999999999999995 9999999999999887


Q ss_pred             HHHHHHHhh
Q 020049          319 LAGSIQKGI  327 (332)
Q Consensus       319 l~~~~~~~~  327 (332)
                      -+-.++.++
T Consensus       391 e~l~veAa~  399 (450)
T 1s6y_A          391 ERVAAEAAV  399 (450)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776666554

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=1.3e-41  Score=318.60  Aligned_cols=291  Identities=21%  Similarity=0.382  Sum_probs=249.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC---CCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++|||+|||| |.+|+.++..|+..++..+|+|+|+++  .++.+.|+.+...   ...+..   +++ ++++++||+||
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-~~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDD-PEICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCC-HHHhCCCCEEE
Confidence            3589999999 999999999999988777999999986  4455666665431   223332   235 47899999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~~r  172 (332)
                      ++++.++++|++|.|++.+|+++++++++.+.+++|+++|++++||++.++++.    ++.+++|++||+|. |.+++.|
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~----~~~~~~~~~~vig~~~~l~~~r  156 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGSGTNLDSAR  156 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH----HHhcCCCHHHEeeccccHhHHH
Confidence            999999999999999999999999999999999999999999999999997653    56678999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----------C--CCHHHHHHHHHHHhccchhhhhcccC
Q 020049          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------S--FTQEETEYLTNRIQNGGTEVVEAKAG  239 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~--~~~~~~~~l~~~v~~~~~~i~~~~~~  239 (332)
                      ++..+++++++++.+++.+++|+|++ +++|+|++..++.           .  .+++.++++.+++++++.++++   .
T Consensus       157 ~~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~---~  232 (319)
T 1lld_A          157 LRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---G  232 (319)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHT---S
T ss_pred             HHHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhh---C
Confidence            99999999999999999999999999 9999999976531           1  2333478888999999999988   4


Q ss_pred             CCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 020049          240 AGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  317 (332)
Q Consensus       240 kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~  317 (332)
                      +|.+.|++|.+.++++++|++|++   ..++++ +++|.| ..+.++|+||.++++|+++++++ +|+++|+++|++|++
T Consensus       233 ~G~~~~~~a~~~~sm~~di~~~~~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~~  308 (319)
T 1lld_A          233 KGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAE  308 (319)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHH
Confidence            578889999999999999999875   466675 789998 56899999999999999999995 999999999999999


Q ss_pred             HHHHHHHHh
Q 020049          318 ELAGSIQKG  326 (332)
Q Consensus       318 ~l~~~~~~~  326 (332)
                      .|++.++..
T Consensus       309 ~l~~~~~~~  317 (319)
T 1lld_A          309 TLKETAAQF  317 (319)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999998753

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.1e-41  Score=333.19  Aligned_cols=291  Identities=15%  Similarity=0.178  Sum_probs=219.7

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEccCC--cHHHHHHHhcC-----CCCCeEEEEeCCCCHHhhcCC
Q 020049           20 GFKVAILGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVN--TPGVTADISHM-----DTGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~v-G~~~a~~l~~~--~~-~~ei~L~D~~~--~~~~~~dl~~~-----~~~~~v~~~~~~~d~~~a~~~   88 (332)
                      ++||+|||| |++ +..++..|+..  ++ ..+|+|+|+++  +++ ..|+.+.     ....++..   ++|++++++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            469999999 888 55577777776  66 77999999987  333 2333322     22345654   4688899999


Q ss_pred             CcEEEEcCCCCCCCCCCh--------------------hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 020049           89 MDLVIIPAGVPRKPGMTR--------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r--------------------~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~  148 (332)
                      ||+||++++.++++|++|                    .+++.+|+++++++++.|+++||+||+|++|||+|++|++  
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~--  180 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEA--  180 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHH--
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHH--
Confidence            999999999987777666                    4458999999999999999999999999999999999765  


Q ss_pred             HHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCC-CCCceeEEE-----------e-cCCCceeecccCCCC-----
Q 020049          149 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-----------G-HAGVTILPLLSQVKP-----  210 (332)
Q Consensus       149 ~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~-~~v~~~v~G-----------~-hg~~~~vp~~s~~~v-----  210 (332)
                        +++.+  |+.||||+|+.. .|+++.+|+.+|++| ++|+++++|           + ||+ +.+|.|+...+     
T Consensus       181 --~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~~  254 (472)
T 1u8x_X          181 --TRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGYI  254 (472)
T ss_dssp             --HHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSSC
T ss_pred             --HHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCCC
Confidence              46764  888999998665 499999999999998 999999999           8 999 99999987321     


Q ss_pred             C--------CCCCHHH--------------------H----HHHHH----------HHhc-cchhhhhccc-C--CC---
Q 020049          211 P--------CSFTQEE--------------------T----EYLTN----------RIQN-GGTEVVEAKA-G--AG---  241 (332)
Q Consensus       211 ~--------~~~~~~~--------------------~----~~l~~----------~v~~-~~~~i~~~~~-~--kg---  241 (332)
                      +        .++..+-                    |    +++.+          ++++ .+.++++... +  ++   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T 1u8x_X          255 PKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSE  334 (472)
T ss_dssp             CCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCC
T ss_pred             ccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Confidence            0        0111000                    0    11111          1222 2223322110 2  33   


Q ss_pred             chhh---HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          242 SATL---SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       242 ~~~~---s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                      .+.|   ++|.+++++++||++|++   .+++++ .++|+|   |+|+++|+||+||++|++++... +|+++|+++++.
T Consensus       335 ~~~~~~~~~~~~a~~ii~AI~~d~~---~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~~  410 (472)
T 1u8x_X          335 NSEIKIDDHASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLMEQ  410 (472)
T ss_dssp             SCSSCCCTTTHHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcCCC---eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHHH
Confidence            3444   899999999999999976   588886 688987   58999999999999999999995 999999999998


Q ss_pred             HHHHHHHHHHHhh
Q 020049          315 AKKELAGSIQKGI  327 (332)
Q Consensus       315 sa~~l~~~~~~~~  327 (332)
                      -...-+-.++.++
T Consensus       411 ~~~~e~l~veAa~  423 (472)
T 1u8x_X          411 QVSVEKLTVEAWA  423 (472)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7766665555544

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=3.2e-33  Score=271.31  Aligned_cols=289  Identities=19%  Similarity=0.220  Sum_probs=198.5

Q ss_pred             CCCCeEEEEcCCCchH--HHHHHHHHhCC-CCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           18 AAGFKVAILGAAGGIG--QPLAMLMKINP-LVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG--~~~a~~l~~~~-~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++++||+|||| |++|  ..++..|+... +..+|+|+|+++.+ .....+.+.......+.. .|+|+++|++||||||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~~~~~I~-~TtD~~eAl~dADfVI   80 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWRYE-AVSTLKKALSAADIVI   80 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTTSCEEEE-EESSHHHHHTTCSEEE
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhccCCeEE-EECCHHHHhcCCCEEE
Confidence            35579999999 9985  57777777643 33499999998721 111112211111233332 3679999999999999


Q ss_pred             EcCC------------CCCCCCCChh--h--------hHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 020049           94 IPAG------------VPRKPGMTRD--D--------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        94 ~~~g------------~~~~~g~~r~--~--------~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~  151 (332)
                      +++.            .|+++|+.+.  |        ...+|+++++++++.|+++||+||+|++|||+|++|+++    
T Consensus        81 ~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~----  156 (450)
T 3fef_A           81 ISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL----  156 (450)
T ss_dssp             ECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----
T ss_pred             eccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----
Confidence            9975            5888888655  4        445999999999999999999999999999999998654    


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHh----C---CCCCCCceeEEE-ecCC---------Cceeec----------
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVL----G---LDPRDVDVPVVG-GHAG---------VTILPL----------  204 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l----~---v~~~~v~~~v~G-~hg~---------~~~vp~----------  204 (332)
                      ++.  +|+.||||+|+.. .++++.+|+.|    |   +++++++..++| ||..         ++.+|.          
T Consensus       157 ~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~  233 (450)
T 3fef_A          157 YKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAHYGE  233 (450)
T ss_dssp             HHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEEEEEEEEETTEEHHHHHHHHHHHHTT
T ss_pred             HHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeEeEEEEEECCEEChHHHHHHHHhhcc
Confidence            555  6889999999877 58999999999    5   679999999999 6643         122331          


Q ss_pred             ---------ccCC-----------------------------CCCCCC-----------CHHHH--HH---HHHHHhcc-
Q 020049          205 ---------LSQV-----------------------------KPPCSF-----------TQEET--EY---LTNRIQNG-  229 (332)
Q Consensus       205 ---------~s~~-----------------------------~v~~~~-----------~~~~~--~~---l~~~v~~~-  229 (332)
                               |...                             +.+..|           +...|  ++   ..+++++. 
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  313 (450)
T 3fef_A          234 SGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETERLI  313 (450)
T ss_dssp             TCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHHHHh
Confidence                     1000                             000000           00000  00   00111100 


Q ss_pred             -chhhhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCC
Q 020049          230 -GTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPL  304 (332)
Q Consensus       230 -~~~i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L  304 (332)
                       +..-+.   -++   +  +.+++++++||++|++   .+++++ .++|.|   |+|+++|+||+||++|+.++.. ++|
T Consensus       314 ~~~~~~~---~~~---~--~e~~~~ii~aI~~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~-g~L  381 (450)
T 3fef_A          314 VQQRGVA---EKA---S--GEEGVNIIAALLGLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILS-GAL  381 (450)
T ss_dssp             HTTCCCC---CSC---C--SCCHHHHHHHHTTSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCC-CCC
T ss_pred             cCCcCcC---cCc---c--HHHHHHHHHHHHcCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceeccc-CCC
Confidence             000000   011   1  2557899999999976   477776 688987   6799999999999999999988 599


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHhh
Q 020049          305 NEYERIGLEKAKKELAGSIQKGI  327 (332)
Q Consensus       305 ~~~E~~~l~~sa~~l~~~~~~~~  327 (332)
                      +++++++++.-...-+-.++.++
T Consensus       382 p~~~~~l~~~~~~~e~l~veAa~  404 (450)
T 3fef_A          382 PKGVEMLAARHISNQEAVADAGL  404 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999887666665555544

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.98  E-value=7.4e-31  Score=256.62  Aligned_cols=291  Identities=18%  Similarity=0.149  Sum_probs=194.8

Q ss_pred             CCCeEEEEcCCCchHHHH--HHHHHhC-CC-CcEEEEEccCC--cHHHHHHHh-----cCCCCCeEEEEeCCCCHHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPL--AMLMKIN-PL-VSVLHLYDVVN--TPGVTADIS-----HMDTGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~--a~~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~-----~~~~~~~v~~~~~~~d~~~a~~   87 (332)
                      +++||+|||| |+||.+.  +..|+.. ++ ..+|+|+|+++  +++ +.++.     +.....++..   ++|++++++
T Consensus         2 ~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~   76 (480)
T 1obb_A            2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVII   76 (480)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhC
Confidence            4579999999 9986554  5677643 33 56999999987  233 22221     2222345554   468889999


Q ss_pred             CCcEEEEcCCC------------CCCCCCCh--hh------------hHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           88 GMDLVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        88 ~aDiVi~~~g~------------~~~~g~~r--~~------------~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      |||+||+++|.            |.++|+.+  .+            ++.+|+++++++++.|+++||+||+|++|||+|
T Consensus        77 dAD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd  156 (480)
T 1obb_A           77 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF  156 (480)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH
T ss_pred             CCCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence            99999999986            45556544  33            478999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE-ecCC---------Cceee--------
Q 020049          142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG---------VTILP--------  203 (332)
Q Consensus       142 ~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp--------  203 (332)
                      ++|+++    ++   +|+.||||+|+++. ++++.+ +.+|++|++|+++++| +|..         ++.+|        
T Consensus       157 i~t~~~----~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~  227 (480)
T 1obb_A          157 EGTTLV----TR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEE  227 (480)
T ss_dssp             HHHHHH----HH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHHH
T ss_pred             HHHHHH----HH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHHc
Confidence            998654    55   68899999975554 478999 9999999999999999 3322         11111        


Q ss_pred             ---------cccC--CC-----------CCC-------CCC------H------------------HH----HHHHHHHH
Q 020049          204 ---------LLSQ--VK-----------PPC-------SFT------Q------------------EE----TEYLTNRI  226 (332)
Q Consensus       204 ---------~~s~--~~-----------v~~-------~~~------~------------------~~----~~~l~~~v  226 (332)
                               .|+.  ..           ++.       ++.      .                  .+    +.+..+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~  307 (480)
T 1obb_A          228 KSKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEIT  307 (480)
T ss_dssp             TGGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHH
Confidence                     1322  10           111       111      1                  01    11111111


Q ss_pred             hccchhhhhcccCCC--------chhh----------------HHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---
Q 020049          227 QNGGTEVVEAKAGAG--------SATL----------------SMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---  278 (332)
Q Consensus       227 ~~~~~~i~~~~~~kg--------~~~~----------------s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---  278 (332)
                      .+.-+++.+...-+.        .++|                ..+..++++++||++|++   .++.++ .++|.+   
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~l  384 (480)
T 1obb_A          308 KKVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHGI  384 (480)
T ss_dssp             HHHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTTS
T ss_pred             HHHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCCC
Confidence            111122222110001        1111                112567899999999976   355554 678875   


Q ss_pred             CCccEEEEeEEEcCCceEEeccCCC-CCHHHHHH-HHHHHHHHHHHHHHhh
Q 020049          279 TELPFFASKVRLGRQGAEEIFQLGP-LNEYERIG-LEKAKKELAGSIQKGI  327 (332)
Q Consensus       279 ~~~~~~s~Pv~ig~~Gv~~i~~~~~-L~~~E~~~-l~~sa~~l~~~~~~~~  327 (332)
                      |+++++++||+++++|+.++.. ++ |++..+++ ++.-...-+-.++.++
T Consensus       385 p~d~vVEvp~~v~~~G~~p~~~-g~~lP~~~~~l~~~~~~~~e~l~veA~~  434 (480)
T 1obb_A          385 DDDVVVEVPALVDKNGIHPEKI-EPPLPDRVVKYYLRPRIMRMEMALEAFL  434 (480)
T ss_dssp             CTTSEEEEEEEEETTEEEECCC-SSCCCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEEEEcCCCCEeecc-CCCCCHHHHhHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999887 58 99999999 7776665555555443

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.97  E-value=1.6e-30  Score=255.25  Aligned_cols=273  Identities=19%  Similarity=0.147  Sum_probs=182.0

Q ss_pred             CeEEEEcCCCchHHHH--HHHHHhCC----CCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCC
Q 020049           21 FKVAILGAAGGIGQPL--AMLMKINP----LVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~--a~~l~~~~----~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~   88 (332)
                      |||+|||| |++|++.  ...++...    ..++|+|+|+++  +++...++.+..    ...++..   |+|+++|++|
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~---t~d~~eAl~g   76 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVK---TESLDEAIEG   76 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEE---ESCHHHHHTT
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEE---eCCHHHHhCC
Confidence            69999999 9998764  34455432    246999999998  455555544432    2334443   5799999999


Q ss_pred             CcEEEEcCCC-------------------CCCCCCChhhhH---------------hhhHHHHHHHHHHHHhhCCCcEEE
Q 020049           89 MDLVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus        89 aDiVi~~~g~-------------------~~~~g~~r~~~~---------------~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                      |||||+++|.                   |+|+|++|.++.               .+|++++.+++++|+++|||||+|
T Consensus        77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~i  156 (477)
T 3u95_A           77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLM  156 (477)
T ss_dssp             CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEE
Confidence            9999999874                   346676654432               358999999999999999999999


Q ss_pred             EecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCC----
Q 020049          135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----  210 (332)
Q Consensus       135 v~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v----  210 (332)
                      |+|||++++|+.+    +++++   .|++|+|+....  ...+++.||+++++|+..+.|-|+. +-+..|+....    
T Consensus       157 n~tNP~~i~t~a~----~~~~~---~k~vGlC~~~~~--~~~~~~~Lg~~~~~v~~~~~GlNH~-~w~~~~~~~G~D~~P  226 (477)
T 3u95_A          157 QTANPVFEITQAV----RRWTG---ANIIGFCHGVAG--VYEVFERLGLDPEEVDWQVAGVNHG-IWLNRFRYRGKDAYP  226 (477)
T ss_dssp             ECSSCHHHHHHHH----HHHHC---CCEEEECCGGGH--HHHHHHHTTCCGGGEEEEEEEETTE-EEEEEEEETTEECHH
T ss_pred             EecChHHHHHHHH----HHhCC---CCeEEECCCHHH--HHHHHHHhCCCHHHcEEEEeecCCC-eeeeeeeecCCcccH
Confidence            9999999998654    56655   589999975543  3567788999999999999997765 33322221100    


Q ss_pred             -------------------------------------C------C-C----CCHH----------------HHHHHHHHH
Q 020049          211 -------------------------------------P------C-S----FTQE----------------ETEYLTNRI  226 (332)
Q Consensus       211 -------------------------------------~------~-~----~~~~----------------~~~~l~~~v  226 (332)
                                                           +      + .    +..+                ++..+.+.+
T Consensus       227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~r~~g~~p~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  306 (477)
T 3u95_A          227 LLDEWIEKELSKWEPKNPWDTQMSPAAMDMYRFYGMLPIGDTVRNGTWKYHYNLETKKKWFRRFGGIDNEVERPKFHEHL  306 (477)
T ss_dssp             HHHHHHHHHTTTCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGGTSCCGGGTSSHHHHHHHHCTTCCSSSTTHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccCccccccchHHHHHHHHhCCcccccccccccchhhhhHHHHHHHHHHhcccchhhhhhhHHHHH
Confidence                                                 0      0 0    0000                000111111


Q ss_pred             hccc-------hhhhhc-------c---cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEE
Q 020049          227 QNGG-------TEVVEA-------K---AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFA  285 (332)
Q Consensus       227 ~~~~-------~~i~~~-------~---~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s  285 (332)
                      +...       .++.+-       +   .-.+...||  .+++++++||++|++   .++.++ .++|.+   |+|++++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--e~a~~ii~AI~~~~~---~~~~vNv~N~G~I~nLP~DavVE  381 (477)
T 3u95_A          307 RRARERLIKLAEEVQENPHLKITEKHPEIFPKGRLSG--EQHIPFINAIANNKR---VRLFLNVENQGALKDFPDDLVME  381 (477)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCHHHHCTTTSCSSCCCC--CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEE
T ss_pred             HHHHHHHHHHHHHHhhccchhcccccchhcccccccH--HHHHHHHHHHhCCCC---eEEEEEeecCcccCCCCCCcEEE
Confidence            1110       111000       0   000112233  567899999999986   355554 678886   7899999


Q ss_pred             EeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          286 SKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       286 ~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                      +||+|+++|+.++.. +++++...+++.
T Consensus       382 Vpc~Vd~~Gi~P~~v-g~~p~~~~~l~~  408 (477)
T 3u95_A          382 LPVWVDSSGIHREKV-EPDLTHRIKIFY  408 (477)
T ss_dssp             EEEEEETTEEEECCC-CSCCCHHHHHHT
T ss_pred             EEEEEcCCCcccccC-CCCCHHHHHHHH
Confidence            999999999998765 588877776653

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.01  E-value=1.5e-09  Score=100.83  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHH--H----HHHhcCC--C---C-----CeEEEEeCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T----ADISHMD--T---G-----AVVRGFLGQPQ   81 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~----~dl~~~~--~---~-----~~v~~~~~~~d   81 (332)
                      .||+|||| |.||+.+|..++..|+  +|+|+|+++ .  .+.  .    ..+....  .   .     .++..   ++|
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~~   80 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CTN   80 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---ECC
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---ccc
Confidence            58999999 9999999999999999  999999987 1  111  1    1122111  0   0     12443   468


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        82 ~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      +.+++++||+||.++              .+|+++.+++..++++++| ++  |++||.+.+...-+    ..... .|+
T Consensus        81 l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~i----a~~~~-~p~  139 (319)
T 3ado_A           81 LAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKL----FTGLA-HVK  139 (319)
T ss_dssp             HHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHH----HTTCT-TGG
T ss_pred             hHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhh----hhhcc-CCC
Confidence            889999999999995              7889999999999999995 77  55999998775322    23333 356


Q ss_pred             ceEEee
Q 020049          161 KLLGVT  166 (332)
Q Consensus       161 kviG~~  166 (332)
                      |++|+.
T Consensus       140 r~ig~H  145 (319)
T 3ado_A          140 QCIVAH  145 (319)
T ss_dssp             GEEEEE
T ss_pred             cEEEec
Confidence            888874

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.82  E-value=3e-08  Score=101.84  Aligned_cols=134  Identities=13%  Similarity=0.172  Sum_probs=93.2

Q ss_pred             hhHHhhhhhccCC-----------CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHH--HH------
Q 020049            5 SCLRQAKCRAKGG-----------AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--TA------   62 (332)
Q Consensus         5 ~~~~~~~~~~~~~-----------~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~--~~------   62 (332)
                      .||.+.++.+...           ++-.||+|||| |.||+.+|..++..|+  +|+|+|+++  + .+.  ..      
T Consensus       290 aFf~~r~~~k~~~~~~~~~~~~~~~~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~  366 (742)
T 3zwc_A          290 AFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKE  366 (742)
T ss_dssp             HHHHHHHTTSCBCTTCCBTTTCCCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccccccccccCcccccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHH
Confidence            5777766654221           12369999999 9999999999999999  999999987  1 111  10      


Q ss_pred             --HHhcCC---CCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe
Q 020049           63 --DISHMD---TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI  136 (332)
Q Consensus        63 --dl~~~~---~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~  136 (332)
                        ......   ....+..   ++++ +++++||+||.++              .+|+++.+++.++++++++ ++  |++
T Consensus       367 ~~~~~~~~~~~~~~~~~~---~~~~-~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlA  426 (742)
T 3zwc_A          367 ASRAHQNGQASAKPKLRF---SSST-KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLC  426 (742)
T ss_dssp             HHHHHTTTCCCCCCCEEE---ESCG-GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEE
T ss_pred             HHhccccchhhhhhhhcc---cCcH-HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEE
Confidence              111111   1234443   3454 7799999999995              7889999999999999995 77  559


Q ss_pred             cCCCCchHHHHHHHHHHhCCCCCCceEEee
Q 020049          137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus       137 tNP~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      ||.+.+-..-+    ...... |+|++|+.
T Consensus       427 SNTSsl~i~~i----a~~~~~-p~r~ig~H  451 (742)
T 3zwc_A          427 TNTSALNVDDI----ASSTDR-PQLVIGTH  451 (742)
T ss_dssp             ECCSSSCHHHH----HTTSSC-GGGEEEEE
T ss_pred             ecCCcCChHHH----HhhcCC-cccccccc
Confidence            99998765322    233333 46888874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.58  E-value=8.2e-08  Score=87.64  Aligned_cols=100  Identities=17%  Similarity=0.253  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHh--------c--CCC-------CCeEEEEeCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS--------H--MDT-------GAVVRGFLGQP   80 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~--------~--~~~-------~~~v~~~~~~~   80 (332)
                      .+||+|||+ |.+|+.+|..++..|+  +|+++|+++.  ......+.        .  ...       ...+..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            468999999 9999999999999998  9999999871  11111110        0  000       012333   35


Q ss_pred             CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                      ++.+++++||+||++.              ..+....+++.+.+.+++ |++++  +||...
T Consensus        78 ~~~~~~~~aDlVi~av--------------~~~~~~~~~v~~~l~~~~~~~~il--~s~tS~  123 (283)
T 4e12_A           78 DLAQAVKDADLVIEAV--------------PESLDLKRDIYTKLGELAPAKTIF--ATNSST  123 (283)
T ss_dssp             CHHHHTTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSS
T ss_pred             CHHHHhccCCEEEEec--------------cCcHHHHHHHHHHHHhhCCCCcEE--EECCCC
Confidence            7778899999999995              344667778888888887 46654  444443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.58  E-value=4.1e-07  Score=88.48  Aligned_cols=110  Identities=16%  Similarity=0.197  Sum_probs=75.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC--CC--------------CCeEEEEeCCCCHH
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DT--------------GAVVRGFLGQPQLE   83 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~--~~--------------~~~v~~~~~~~d~~   83 (332)
                      +|||+|||+ |+||..+|..|+..|+  +|+++|+++.+.  ..+...  ..              ...+..   ++|++
T Consensus         2 ~mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~---t~d~~   73 (450)
T 3gg2_A            2 SLDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKI--EQLNSGTIPIYEPGLEKMIARNVKAGRLRF---GTEIE   73 (450)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTCSCCCSTTHHHHHHHHHHTTSEEE---ESCHH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHH--HHHHcCCCcccCCCHHHHHHhhcccCcEEE---ECCHH
Confidence            379999999 9999999999999998  999999986221  112111  00              123443   45778


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCch
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNST  143 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~  143 (332)
                      +++++||+||++.+.|...+.      ..++..+.++++.+.++.+ +.+|+.. |.|.+..
T Consensus        74 ea~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~  129 (450)
T 3gg2_A           74 QAVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSY  129 (450)
T ss_dssp             HHGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred             HHHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcch
Confidence            889999999999887765433      2345667777777777764 5555554 4555543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.56  E-value=1e-06  Score=86.04  Aligned_cols=118  Identities=14%  Similarity=0.179  Sum_probs=79.2

Q ss_pred             hhhHHhhhhhc---------cC--CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHHH--H----H
Q 020049            4 NSCLRQAKCRA---------KG--GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVT--A----D   63 (332)
Q Consensus         4 ~~~~~~~~~~~---------~~--~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~~--~----d   63 (332)
                      ..||.++.+.|         .+  .++.+||+|||+ |.||+.+|..|+..|+  +|+++|+++  . .+..  .    .
T Consensus        10 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~   86 (463)
T 1zcj_A           10 YAFFAEKSANKWSTPSGASWKTASAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEK   86 (463)
T ss_dssp             HHHHGGGGGGSCBCTTCCBTTTCCCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCccCCCccccccCCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHH
Confidence            36888888877         11  123468999999 9999999999999998  999999986  1 1111  0    0


Q ss_pred             ------HhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEE
Q 020049           64 ------ISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNL  135 (332)
Q Consensus        64 ------l~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv  135 (332)
                            +..... ....+.   ++++ +++++||+||++.              .++..+.+++.+.+.++++ +++|  
T Consensus        87 ~~~~g~~~~~~~~~~~~~i---~~~~-~~~~~aDlVIeaV--------------pe~~~~k~~v~~~l~~~~~~~~ii--  146 (463)
T 1zcj_A           87 EASRAHQNGQASAKPKLRF---SSST-KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--  146 (463)
T ss_dssp             HHHHHHHTTCCCCCCCEEE---ESCG-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--
T ss_pred             HHHcCCCCHHHHHHHHhhh---cCCH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCeEE--
Confidence                  111111 112232   3465 6799999999996              2356777788888888885 6644  


Q ss_pred             ecCCCCchH
Q 020049          136 ISNPVNSTV  144 (332)
Q Consensus       136 ~tNP~~~~t  144 (332)
                      +||....-+
T Consensus       147 ~snTs~~~~  155 (463)
T 1zcj_A          147 CTNTSALNV  155 (463)
T ss_dssp             EECCSSSCH
T ss_pred             EeCCCCcCH
Confidence            457766544

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.52  E-value=6.2e-07  Score=86.65  Aligned_cols=120  Identities=19%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC----------------CCCeEEEEeCC
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQ   79 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~   79 (332)
                      .+.++.+|+|||. |+||..+|..|+..|+  +|+.+|+++.+  +..|....                ...+++.   +
T Consensus        17 ~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~k--V~~ln~G~~pi~Epgl~ell~~~~~~g~l~~---t   88 (444)
T 3vtf_A           17 RGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSI--VERLRAGRPHIYEPGLEEALGRALSSGRLSF---A   88 (444)
T ss_dssp             TTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---C
T ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHCCCCCCCCCCHHHHHHHHHHcCCeeE---E
Confidence            3445679999999 9999999999999998  99999998621  11121110                1234554   5


Q ss_pred             CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEE-ecCCCCchHH
Q 020049           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVP  145 (332)
Q Consensus        80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv-~tNP~~~~t~  145 (332)
                      +|.++++++||++|++.++|...+... | +..-....+.+++.++...+..+||+ .|-|++..-.
T Consensus        89 t~~~~ai~~ad~~~I~VpTP~~~d~~~-D-l~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~  153 (444)
T 3vtf_A           89 ESAEEAVAATDATFIAVGTPPAPDGSA-D-LRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEG  153 (444)
T ss_dssp             SSHHHHHHTSSEEEECCCCCBCTTSSB-C-CHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTT
T ss_pred             cCHHHHHhcCCceEEEecCCCCCCCCC-C-cHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHH
Confidence            677899999999999999997654321 2 12223455666777765555555444 3788876543

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.51  E-value=1.1e-06  Score=85.41  Aligned_cols=101  Identities=16%  Similarity=0.224  Sum_probs=72.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHH------HHHhcCCC---------CCeEEEEeCCCCHHh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT------ADISHMDT---------GAVVRGFLGQPQLEN   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~------~dl~~~~~---------~~~v~~~~~~~d~~~   84 (332)
                      .+||+|||+ |.||+.+|..++..|+  +|+++|+++.++..      ..+.....         ..++..   ++|+ +
T Consensus        54 i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~dl-~  126 (460)
T 3k6j_A           54 VNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSDF-H  126 (460)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESCG-G
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCCH-H
Confidence            368999999 9999999999999998  99999998632211      11211111         123454   3466 5


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  143 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~  143 (332)
                      ++++||+||++.              .++..+.+++.+.+.++++ +++|  +||.+.+-
T Consensus       127 al~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~aIl--asnTSsl~  170 (460)
T 3k6j_A          127 KLSNCDLIVESV--------------IEDMKLKKELFANLENICKSTCIF--GTNTSSLD  170 (460)
T ss_dssp             GCTTCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSSC
T ss_pred             HHccCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCCEE--EecCCChh
Confidence            899999999995              4567888889999999884 6644  56655443

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.48  E-value=7.6e-07  Score=81.58  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +|||.|+||+|++|++++..|+..|+  +|+.++++.....   +..    ..+..  .. ..++.++++++|+||.+++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~----~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---IND----YEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------C----CEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCc----eEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            47999999999999999999999988  9999998742111   211    11111  11 1245678899999999988


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHH
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  177 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~l  177 (332)
                      .....  ...+....|+....++++.+.+....-+|.+.|.-+..-..  ...+.......+...+|.+.....++...+
T Consensus        72 ~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  147 (311)
T 3m2p_A           72 TRGSQ--GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDET--SLPWNEKELPLPDLMYGVSKLACEHIGNIY  147 (311)
T ss_dssp             CCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGG--GCSBCTTSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCC--CCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Confidence            65433  44556788999999999999887655444433322211100  000000011122345566655666666666


Q ss_pred             HHHhCCCCCCCc-eeEEEecC
Q 020049          178 AEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       178 a~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ++..|++..-++ +.++|...
T Consensus       148 ~~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          148 SRKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHHSCCEEEEEEECEEECSCC
T ss_pred             HHHcCCCEEEEeeCceeCcCC
Confidence            666676544443 45677543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.48  E-value=3.4e-07  Score=85.07  Aligned_cols=156  Identities=17%  Similarity=0.197  Sum_probs=97.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +.+||.|+||+|++|++++..|+..|+  +|+.+|++...        .. ...+.. +....++.++++++|+||++|+
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~--------~~-~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG--------TG-GEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS--------SC-CSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC--------CC-ccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            457899999999999999999999987  89999987522        11 011111 1111235577899999999998


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-------CCC-chHHHHHHHHHHhCCCCCCceEEeehhh
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-------PVN-STVPIAAEVFKKAGTYDPKKLLGVTMLD  169 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-------P~~-~~t~~~~~~~~~~~~~~~~kviG~~~ld  169 (332)
                      ..........+.+..|+.....+++.+.+.....+|.+.|.       +.. .+.        .....++...+|.+...
T Consensus        87 ~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~--------E~~~~~~~~~Y~~sK~~  158 (347)
T 4id9_A           87 FMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVT--------EDHPLCPNSPYGLTKLL  158 (347)
T ss_dssp             CCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBC--------TTSCCCCCSHHHHHHHH
T ss_pred             ccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcC--------CCCCCCCCChHHHHHHH
Confidence            65433333466778899999999999988654444433341       111 110        11122344456666666


Q ss_pred             HHHHHHHHHHHhCCCCCCCc-eeEE
Q 020049          170 VVRANTFVAEVLGLDPRDVD-VPVV  193 (332)
Q Consensus       170 ~~r~~~~la~~l~v~~~~v~-~~v~  193 (332)
                      ..++...+++..+++..-++ +.++
T Consensus       159 ~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          159 GEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHhcCCceEEEccceEe
Confidence            66666666677666544443 4455

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.47  E-value=1e-06  Score=85.36  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--C--------------CCeEEEEeCCCCHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQLEN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~~~   84 (332)
                      |||+|||+ |.||..++..|+..|+  +|+++|+++.+  +..+....  .              ..++..   ++++.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            68999999 9999999999999988  99999997622  11222210  0              113443   457777


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-C---CcEEEEe-cCCCCch
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P---NATVNLI-SNPVNST  143 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p---~a~viv~-tNP~~~~  143 (332)
                      ++++||+||++.+.|..... .     -++..+.+.++.+.++. +   +.+|+.. |+|.+..
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~-----~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t  130 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-D-----LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTV  130 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-S-----BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHH
T ss_pred             HhccCCEEEEEcCCCcccCC-C-----cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCch
Confidence            89999999999877654322 1     12334444555555443 4   5666655 7888763

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.46  E-value=7.2e-07  Score=87.51  Aligned_cols=120  Identities=18%  Similarity=0.192  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC---------------CCeEEEEeCCCCHH
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---------------GAVVRGFLGQPQLE   83 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---------------~~~v~~~~~~~d~~   83 (332)
                      ++|||+|||+ |.||..+|..|+..+...+|+++|+++.+  +..+.....               ...+..   ++|+.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAK--IAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            4579999999 99999999999887433399999997622  222222110               012443   45777


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe-cCCCCchHH
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTVP  145 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~-tNP~~~~t~  145 (332)
                      +++++||+||++.+.|...+.++.+ -..++..+.+.++.+.++.+ +.+|+.. |+|.+..-.
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~  144 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAES  144 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHH
Confidence            8899999999999888654433222 12334556677777777764 5555543 788876543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.45  E-value=1.8e-06  Score=84.30  Aligned_cols=118  Identities=14%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCc--HHHHHHHhcCC--C----------------CCeEEEEe
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMD--T----------------GAVVRGFL   77 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~--~~~~~dl~~~~--~----------------~~~v~~~~   77 (332)
                      +.|||+|||+ |+||..+|..|+.. |+. +|+++|+++.  ++.+..+....  .                ...+..  
T Consensus        17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~--   92 (478)
T 3g79_A           17 PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFEC--   92 (478)
T ss_dssp             SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEE--
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEE--
Confidence            3579999999 99999999999998 763 8999999874  22444444321  1                123443  


Q ss_pred             CCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchHHH
Q 020049           78 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPI  146 (332)
Q Consensus        78 ~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t~~  146 (332)
                       ++| .+++++||+||++.+.|...+..+    ..++..+...++.+.++. |+.+||.. |-|.+..-.+
T Consensus        93 -ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v  157 (478)
T 3g79_A           93 -TPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGM  157 (478)
T ss_dssp             -ESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTH
T ss_pred             -eCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHH
Confidence             456 688999999999988876543321    123455666666777666 45555554 5666654433

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.43  E-value=4.1e-07  Score=84.67  Aligned_cols=175  Identities=15%  Similarity=0.048  Sum_probs=104.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC---CCeEEEEeCC----CCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQ----PQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~----~d~~~a~~~a   89 (332)
                      +++||.|+||+|++|++++..|+..|+  +|+.+|+..  ......++.....   ...+..+...    .++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            457999999999999999999999988  999999865  2233333332210   0223322211    2355778999


Q ss_pred             cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeeh
Q 020049           90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (332)
Q Consensus        90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~  167 (332)
                      |+||.+|+.....  ..+..+....|+.....+++.+.+.....+|.+.|--+.....  ...+....-..+...+|.+.
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~--~~~~~E~~~~~p~~~Y~~sK  179 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHP--ALPKVEENIGNPLSPYAVTK  179 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCC--CSSBCTTCCCCCCSHHHHHH
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCC--CCCCccCCCCCCCChhHHHH
Confidence            9999999854211  1233456788999999999999887654444333321110000  00000000112234456666


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ....++...+++..|++..-++ +.++|...
T Consensus       180 ~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  210 (351)
T 3ruf_A          180 YVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ  210 (351)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence            6666777777777787755553 45777543

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.42  E-value=1.5e-06  Score=79.74  Aligned_cols=101  Identities=15%  Similarity=0.197  Sum_probs=68.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHH-------HHhcCC-CC-------------CeEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTA-------DISHMD-TG-------------AVVRGF   76 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~-------dl~~~~-~~-------------~~v~~~   76 (332)
                      .+||+|||+ |.||+.+|..|+..|+  +|+++|+++.  .....       .+.... ..             ..+.. 
T Consensus        15 ~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~-   90 (302)
T 1f0y_A           15 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   90 (302)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE-
Confidence            368999999 9999999999999988  9999999861  11100       011111 00             12443 


Q ss_pred             eCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCc
Q 020049           77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS  142 (332)
Q Consensus        77 ~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~  142 (332)
                        ++|+.+++++||+||++.              ..+..+.+++.+.+.++++ +++|  +||...+
T Consensus        91 --~~~~~~~~~~aD~Vi~av--------------p~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           91 --STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             --ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             --ecCHHHhhcCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence              347777899999999995              2345566778888887774 6644  4554443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.42  E-value=1.7e-06  Score=81.66  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC--------CCCCeEEEEeCCCCHHhhcCCCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DTGAVVRGFLGQPQLENALTGMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~--------~~~~~v~~~~~~~d~~~a~~~aD   90 (332)
                      ++|||+|||+ |.+|+.++..|+..|+  +|.++|+++.......-.+.        .....+..   ++|+.+++++||
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~aD  101 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGVT  101 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTCC
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcCC
Confidence            3579999999 9999999999999988  89999997522111111111        01123443   357788999999


Q ss_pred             EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      +||++.  |              ...++++++.+..+. |+.+|+.++|..+.
T Consensus       102 vVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~  138 (356)
T 3k96_A          102 DILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAK  138 (356)
T ss_dssp             EEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred             EEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence            999984  2              235777888888877 57788888876554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.40  E-value=1.3e-06  Score=84.21  Aligned_cols=114  Identities=21%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--------------CCeEEEEeCCCCHHh
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------GAVVRGFLGQPQLEN   84 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--------------~~~v~~~~~~~d~~~   84 (332)
                      +.|||+|||+ |+||..+|..|++ |+  +|+++|+++.+  +..+.....              ...++.   ++|+++
T Consensus        35 ~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~--v~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd~~e  105 (432)
T 3pid_A           35 EFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAK--VDMLNQKISPIVDKEIQEYLAEKPLNFRA---TTDKHD  105 (432)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHH--hhHHhccCCccccccHHHHHhhccCCeEE---EcCHHH
Confidence            4579999999 9999999999887 77  99999998621  111221100              123443   457889


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCchHHH
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPI  146 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~t~~  146 (332)
                      ++++||+||++...+........     ++..+++.++.+.+..|+.+||.. |.|.+..-.+
T Consensus       106 a~~~aDvViiaVPt~~~~~~~~~-----Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l  163 (432)
T 3pid_A          106 AYRNADYVIIATPTDYDPKTNYF-----NTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDI  163 (432)
T ss_dssp             HHTTCSEEEECCCCEEETTTTEE-----ECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHH
T ss_pred             HHhCCCEEEEeCCCccccccccc-----cHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHH
Confidence            99999999999654422211111     234444445555554577766655 5777665433

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.39  E-value=4.9e-06  Score=73.02  Aligned_cols=111  Identities=16%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCC-eEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +.|||.|+||+|++|+.++..|+..|+  +|+++++++....  .+.+..  . .+....-+.++.++++++|+||+++|
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~--~~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG--ASDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT--CSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC--CceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            457999999999999999999999998  9999998763211  122111  1 11111111356788999999999998


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ....  ......+..|+.....+++.+.+.... .+|++|.
T Consensus        94 ~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           94 SGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            6532  345556677999999999999877644 4555544

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.38  E-value=1.7e-06  Score=82.98  Aligned_cols=112  Identities=18%  Similarity=0.277  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--------------CCeEEEEeCCCCHHhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------GAVVRGFLGQPQLENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--------------~~~v~~~~~~~d~~~a~   86 (332)
                      |||+|||+ |.||..++..|+. |+  +|+++|+++.+  +..+.....              ...+..   ++++.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHH--HHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            68999999 9999999999998 76  99999997521  122222211              113343   34667889


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEE-ecCCCCchHHH
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPI  146 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv-~tNP~~~~t~~  146 (332)
                      ++||+||++...+...+..+.|     +..+.++++.+.+..|+.+||. .|||.+..-.+
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l  127 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEM  127 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHH
Confidence            9999999997766322222223     2344445555554456777666 68999886544

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.37  E-value=1.3e-06  Score=80.20  Aligned_cols=97  Identities=19%  Similarity=0.200  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHH-hcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADI-SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl-~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .+||+|||+ |.||+.+|..|+ .|+  +|+++|+++. ...+.+. .+. ....++.   +++++ ++++||+||.+. 
T Consensus        12 ~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~-~~~~i~~---~~~~~-~~~~aDlVieav-   81 (293)
T 1zej_A           12 HMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEE-LLSKIEF---TTTLE-KVKDCDIVMEAV-   81 (293)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGG-GGGGEEE---ESSCT-TGGGCSEEEECC-
T ss_pred             CCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHH-HhCCeEE---eCCHH-HHcCCCEEEEcC-
Confidence            469999999 999999999999 998  9999999862 1112221 111 0123553   23554 489999999995 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                                   .++..+.+.+...+... |++++  +||...+
T Consensus        82 -------------pe~~~vk~~l~~~l~~~-~~~Il--asntSti  110 (293)
T 1zej_A           82 -------------FEDLNTKVEVLREVERL-TNAPL--CSNTSVI  110 (293)
T ss_dssp             -------------CSCHHHHHHHHHHHHTT-CCSCE--EECCSSS
T ss_pred             -------------cCCHHHHHHHHHHHhcC-CCCEE--EEECCCc
Confidence                         45577777888888888 98855  4555443

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.36  E-value=8.4e-07  Score=82.38  Aligned_cols=171  Identities=13%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC---HHhhcCC--CcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTG--MDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d---~~~a~~~--aDiV   92 (332)
                      ++|||.|+||+|++|++++..|+..|...+|+.+|..........+........+..+... +|   +.+++++  +|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~V  102 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVI  102 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCEE
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCEE
Confidence            3479999999999999999999988844488888876411111222222112334433221 22   4456666  9999


Q ss_pred             EEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC-------CchHHHHHHHHHHhCCCCCCceE
Q 020049           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-------NSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        93 i~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~-------~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      |.+|+.....  .....+.+..|+.....+++.+.+....-+|.+.|.-+       ..++        ......+...+
T Consensus       103 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~--------E~~~~~p~~~Y  174 (346)
T 4egb_A          103 VNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFT--------EETPLAPNSPY  174 (346)
T ss_dssp             EECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBC--------TTSCCCCCSHH
T ss_pred             EECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcC--------CCCCCCCCChh
Confidence            9999865322  13345667889999999999998875443333333211       0110        11112233456


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      |.+.....++...+++..|++..-++ +.++|...
T Consensus       175 ~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          175 SSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence            66666666676777777787654443 55677543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.36  E-value=2e-06  Score=84.33  Aligned_cols=110  Identities=16%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--C--------------CCeEEEEeCCCCH
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQL   82 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~   82 (332)
                      ..|||+|||+ |.||..+|..|+..|+  +|+++|+++.+  +..+....  .              ..++..   ++|+
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~   78 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDI   78 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCH
Confidence            3589999999 9999999999999998  99999997621  22222211  0              113443   4577


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec-CCCCc
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS-NPVNS  142 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t-NP~~~  142 (332)
                      ++++++||+||++...|.+.+.      .-++..++++++.+.++. |+.+|+..| -|.+.
T Consensus        79 ~~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt  134 (478)
T 2y0c_A           79 EAAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGT  134 (478)
T ss_dssp             HHHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCc
Confidence            7889999999999887754332      234566677777777776 456555443 44443

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.33  E-value=4.2e-06  Score=86.00  Aligned_cols=116  Identities=22%  Similarity=0.329  Sum_probs=78.4

Q ss_pred             hhHHhhhhhccCC--------CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHH--HH-Hh---cC
Q 020049            5 SCLRQAKCRAKGG--------AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT--AD-IS---HM   67 (332)
Q Consensus         5 ~~~~~~~~~~~~~--------~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~--~d-l~---~~   67 (332)
                      .||.+....+..+        .+.+||+|||+ |.||+.+|..++..|+  +|+++|+++.   .+..  .+ +.   ..
T Consensus       289 aF~~kr~~~~~~~~~~~~~~~~~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~  365 (725)
T 2wtb_A          289 VFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRK  365 (725)
T ss_dssp             HHHHHHGGGCCTTTSSSCCCCCCCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HhhhhhhhcccCCCCccccccccCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhc
Confidence            4666666655432        12368999999 9999999999999998  9999999861   1111  11 11   11


Q ss_pred             C---------CCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 020049           68 D---------TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  137 (332)
Q Consensus        68 ~---------~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~t  137 (332)
                      .         ...++..   ++|+ +++++||+||++.              .++..+.+++...+.++++ +++  ++|
T Consensus       366 G~~~~~~~~~~~~~i~~---~~d~-~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~I--las  425 (725)
T 2wtb_A          366 GSMSQEKFEKTMSLLKG---SLDY-ESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHCI--LAS  425 (725)
T ss_dssp             ---CTTHHHHTTTSEEE---ESSS-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCE--EEE
T ss_pred             CCCCHHHHHHHhcceEE---eCCH-HHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcE--EEe
Confidence            0         1123554   3465 7899999999995              4557778888888998885 553  367


Q ss_pred             CCCCch
Q 020049          138 NPVNST  143 (332)
Q Consensus       138 NP~~~~  143 (332)
                      |...+-
T Consensus       426 ntStl~  431 (725)
T 2wtb_A          426 NTSTID  431 (725)
T ss_dssp             CCSSSC
T ss_pred             CCCCCC
Confidence            776553

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.33  E-value=5.4e-06  Score=76.37  Aligned_cols=118  Identities=13%  Similarity=-0.011  Sum_probs=78.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH--HHHHHhcCCCCCeEEEE-e----CCCCHHhhcCCC
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF-L----GQPQLENALTGM   89 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~-~----~~~d~~~a~~~a   89 (332)
                      +.+.++|.|+||+|++|++++..|+..|+  +|+++|++....  ....+.... ...+..+ .    ...++.++++++
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCC
Confidence            34557999999999999999999999888  999999865211  111111100 1223322 1    122345677899


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      |+||++|+.... +.+..+.+..|+.....+++.+.+......+|++|.
T Consensus        85 d~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           85 AGVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             SEEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            999999986532 234556778899999999999875333345666543

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.33  E-value=3.3e-06  Score=82.76  Aligned_cols=101  Identities=21%  Similarity=0.312  Sum_probs=70.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHH----HHhcC---CC---------CCeEEEEeCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTA----DISHM---DT---------GAVVRGFLGQPQ   81 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~----dl~~~---~~---------~~~v~~~~~~~d   81 (332)
                      .+||+|||+ |.||+.+|..|+..|+  +|+++|+++  +.....    .+...   ..         ..++..   +++
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            468999999 9999999999999998  999999987  111111    11111   10         013443   346


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCch
Q 020049           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST  143 (332)
Q Consensus        82 ~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~  143 (332)
                      + +++++||+||++.              ..+..+.+++.+++.++++ ++++  +||...+-
T Consensus        79 ~-~~~~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~~Il--asntSti~  124 (483)
T 3mog_A           79 I-HALAAADLVIEAA--------------SERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS  124 (483)
T ss_dssp             G-GGGGGCSEEEECC--------------CCCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC
T ss_pred             H-HHhcCCCEEEEcC--------------CCcHHHHHHHHHHHHHhhccCcEE--EecCCCCC
Confidence            5 5799999999995              4457778888888998885 6643  55555544

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.30  E-value=1.3e-06  Score=80.72  Aligned_cols=109  Identities=19%  Similarity=0.174  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-C---CCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~a~~~aDiVi~~   95 (332)
                      +|||.|+||+|++|++++..|+..|+  +|+++|++....  .++.+.    .+..+.. -   .++.++++++|+||++
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih~   84 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYL----EPECRVAEMLDHAGLERALRGLDGVIFS   84 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccC----CeEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            46999999999999999999999887  999999876211  112211    1121111 1   2345778999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++..........+....|+.....+++.+.+..... +|++|
T Consensus        85 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~S  125 (342)
T 2x4g_A           85 AGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPR-ILYVG  125 (342)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHHHTCSC-EEEEC
T ss_pred             CccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence            986432223445667889999999999998875433 44444

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.29  E-value=3.4e-06  Score=76.93  Aligned_cols=166  Identities=17%  Similarity=0.128  Sum_probs=98.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|+..|+  +|+.+|++.....  +..+.  ......  .. ..++.+++++ |+||++|+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~--~~~~~~~Dl~-d~~~~~~~~~-d~vih~A~~   72 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVNP--SAELHVRDLK-DYSWGAGIKG-DVVFHFAAN   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSCT--TSEEECCCTT-STTTTTTCCC-SEEEECCSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcCC--CceEEECccc-cHHHHhhcCC-CEEEECCCC
Confidence            6899999999999999999999988  9999998651100  01111  111111  11 1124566777 999999986


Q ss_pred             CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHH
Q 020049           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  176 (332)
Q Consensus        99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~  176 (332)
                      +...  .......+..|+.....+++.+.+.....+|.+.|.-+..-..-  ..+......++...+|.+.....++...
T Consensus        73 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~--~~~~e~~~~~p~~~Y~~sK~~~e~~~~~  150 (312)
T 3ko8_A           73 PEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADV--IPTPEEEPYKPISVYGAAKAAGEVMCAT  150 (312)
T ss_dssp             CSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSS--SSBCTTSCCCCCSHHHHHHHHHHHHHHH
T ss_pred             CCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCC--CCCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence            4321  23345566789999999999998876444443333211100000  0000011223344566666666677777


Q ss_pred             HHHHhCCCCCCCc-eeEEEec
Q 020049          177 VAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       177 la~~l~v~~~~v~-~~v~G~h  196 (332)
                      +++.+|++..-++ +.++|..
T Consensus       151 ~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          151 YARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHhCCCEEEEeeccccCcC
Confidence            7777777654453 4677764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.29  E-value=1.4e-06  Score=76.40  Aligned_cols=101  Identities=19%  Similarity=0.160  Sum_probs=67.4

Q ss_pred             hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcC
Q 020049           11 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        11 ~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L-~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (332)
                      .|.-..++++|||+|||+ |.+|..++..|...|+  +|.+ +|+++.  +....++.     ....    +++ .++++
T Consensus        14 ~~~~~~~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~----~~~-~~~~~   80 (220)
T 4huj_A           14 GTENLYFQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVK----AVE-LKDAL   80 (220)
T ss_dssp             ---CTTGGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEE----ECC-HHHHT
T ss_pred             cccchhhhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCcc----cCh-HHHHh
Confidence            455556666789999998 9999999999999887  8888 998762  22233221     1111    123 46689


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      ++|+||++..                ...+.++++.+.. .++.+||-++||..
T Consensus        81 ~aDvVilavp----------------~~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           81 QADVVILAVP----------------YDSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             TSSEEEEESC----------------GGGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             cCCEEEEeCC----------------hHHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            9999999852                1223455555554 45667888899985

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.28  E-value=4.8e-06  Score=72.45  Aligned_cols=104  Identities=15%  Similarity=0.149  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC----CCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~aDiVi~~   95 (332)
                      +|||.|+||+|++|+.++..|+..|+  +|+++++++..     +...  ...+..+...    .++.++++++|+||.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEK-----IKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGG-----CCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCccc-----chhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            47999999999999999999999987  99999987521     1111  1233332211    2355788999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +|...    ...++...|+.....+++.+.+.... .+|.+|
T Consensus        75 a~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           75 FNPGW----NNPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CcCCC----CChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            87542    12235677999999999999887644 444444

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.27  E-value=1.1e-05  Score=74.64  Aligned_cols=118  Identities=13%  Similarity=0.049  Sum_probs=75.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCC-CCeEEEEe----CCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFL----GQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~-~~~v~~~~----~~~d~~~a~~~aDiV   92 (332)
                      +.++|.|+||+|++|++++..|+..|+  +|+.++++.. .....++.+... ...+..+.    ...++.++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            346899999999999999999999988  8887776652 112222222110 01233221    123456788999999


Q ss_pred             EEcCCCCCCCCCCh-hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           93 IIPAGVPRKPGMTR-DDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        93 i~~~g~~~~~g~~r-~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      |++|+.......+. .+.+..|+.....+++.+.+...-..||++|.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            99987542111222 24677899999999999988763345555543

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.27  E-value=5.8e-06  Score=76.38  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=72.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--H--HHHHHHhcCCCCCeEEEEe----CCCCHHhhcCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P--GVTADISHMDTGAVVRGFL----GQPQLENALTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~--~~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDi   91 (332)
                      .+||.|+||+|++|++++..|+..|+  +|+.++++..  .  ....++..   ...+..+.    ...++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQE---LGDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGG---GSCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCC---CCcEEEEecCCCChHHHHHHHcCCCE
Confidence            46899999999999999999999998  8887766541  1  11122321   11232221    12345678899999


Q ss_pred             EEEcCCCCCCCCCCh-hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           92 VIIPAGVPRKPGMTR-DDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        92 Vi~~~g~~~~~g~~r-~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ||++|+.......+. .+++..|+....++++.+.+...-..||++|.
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS  131 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSS  131 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEec
Confidence            999987542111111 23677899999999999887642235665554

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.25  E-value=3.4e-06  Score=75.73  Aligned_cols=150  Identities=16%  Similarity=0.135  Sum_probs=93.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-C---CCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~a~~~aDiVi~~   95 (332)
                      +++|.|+||+|++|+.++..|+..|.  +|++.|+++....         ...+..+.. -   .++.+++++.|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            35799999999999999999999887  8999998762111         122222111 1   2345678999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      ||...  .......+..|+.....+.+.+.+.... .||++| .-+.....- ...+......++...+|.+......+.
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~-~~~~~e~~~~~~~~~Y~~sK~~~e~~~  147 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQ-TERLGPDVPARPDGLYGVSKCFGENLA  147 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBT-TSCBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCC-CCCCCCCCCCCCCChHHHHHHHHHHHH
Confidence            98742  2334566788999999999999877544 445543 322100000 000000112233445666655566677


Q ss_pred             HHHHHHhCCC
Q 020049          175 TFVAEVLGLD  184 (332)
Q Consensus       175 ~~la~~l~v~  184 (332)
                      +.+++.+|++
T Consensus       148 ~~~a~~~g~~  157 (267)
T 3rft_A          148 RMYFDKFGQE  157 (267)
T ss_dssp             HHHHHHHCCC
T ss_pred             HHHHHHhCCe
Confidence            7778777754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.25  E-value=6.9e-06  Score=70.83  Aligned_cols=102  Identities=12%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |||.|+||+|++|+.++..|+..|+  +|+++++++...  .++. .  ...+.... ...+. +++.++|+||.++|.+
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~--~~~~-~--~~~~~~~D~~d~~~-~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKI--TQTH-K--DINILQKDIFDLTL-SDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHH--HHHC-S--SSEEEECCGGGCCH-HHHTTCSEEEECCCSS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhh--hhcc-C--CCeEEeccccChhh-hhhcCCCEEEECCcCC
Confidence            6899999999999999999999997  999999976221  1222 1  11211110 01122 7899999999999875


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ..       ....|+...+.+++.+++.. ...+|++|.
T Consensus        73 ~~-------~~~~~~~~~~~l~~a~~~~~-~~~~v~~SS  103 (221)
T 3ew7_A           73 PD-------EAEKHVTSLDHLISVLNGTV-SPRLLVVGG  103 (221)
T ss_dssp             TT-------TTTSHHHHHHHHHHHHCSCC-SSEEEEECC
T ss_pred             cc-------ccchHHHHHHHHHHHHHhcC-CceEEEEec
Confidence            32       13458888999999988764 334555543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.25  E-value=3.5e-06  Score=77.68  Aligned_cols=172  Identities=16%  Similarity=0.044  Sum_probs=96.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCC-
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG-QPQ---LENALTG-   88 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~-   88 (332)
                      ..+++||.|+||+|++|++++..|+..|+  +|+++|++...   ....++..   ...+..+.. -+|   +.+++++ 
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~   85 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKA   85 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHc
Confidence            34568999999999999999999999887  99999987521   12222211   123333221 123   3455665 


Q ss_pred             -CcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEE
Q 020049           89 -MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        89 -aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                       .|+||.+|+.....  ..+....+..|+.....+++.+.+......+|++|.. +.....  ...+.......+...+|
T Consensus        86 ~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~--~~~~~E~~~~~p~~~Y~  163 (335)
T 1rpn_A           86 QPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQ--AERQDENTPFYPRSPYG  163 (335)
T ss_dssp             CCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHH
T ss_pred             CCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCC--CCCCCcccCCCCCChhH
Confidence             59999999864321  1234556778999999999999887643455555431 100000  00000001112233455


Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCc-eeEEEe
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGG  195 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~  195 (332)
                      .+.....++...+++.++++..-++ ..++|.
T Consensus       164 ~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp  195 (335)
T 1rpn_A          164 VAKLYGHWITVNYRESFGLHASSGILFNHESP  195 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEeeCcccCC
Confidence            5555556666666777776543332 234553

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.24  E-value=2.4e-06  Score=78.85  Aligned_cols=176  Identities=14%  Similarity=0.057  Sum_probs=99.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~aDiVi~   94 (332)
                      +.|||.|+||+|++|++++..|+..|...+|+.+|+....+....+.+......+..+.. -+|   +.+++.++|+||+
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            347999999999999999999988763238999997541100011211111123333221 123   3456689999999


Q ss_pred             cCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhHH
Q 020049           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  171 (332)
Q Consensus        95 ~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~  171 (332)
                      +||.....  ..+..+++..|+.....+++.+.+......+|++|.. +.....  ...+......++...+|.+.....
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~~sK~~~e  159 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDIL--KGSFTENDRLMPSSPYSATKAASD  159 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCS--SSCBCTTBCCCCCSHHHHHHHHHH
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCC--CCCcCCCCCCCCCCccHHHHHHHH
Confidence            99864210  1123456778999999999999988544456665421 100000  000000112233345566655566


Q ss_pred             HHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          172 RANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       172 r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ++...+++.+|++..-++ +.++|..
T Consensus       160 ~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          160 MLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            666667777775543343 4556654

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.24  E-value=5.6e-06  Score=76.35  Aligned_cols=161  Identities=14%  Similarity=-0.011  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCC--CcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~--aDiVi   93 (332)
                      .++|.|+||+|++|++++..|+..|+  +|+++|++........+........+..+.. -+|   +.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999887  9999998762111011221111123333211 122   3455665  49999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~  170 (332)
                      ++||.....  .......+..|+.....+++.+.+......+|++|.. +.....  ...+......++...+|.+....
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~--~~~~~e~~~~~~~~~Y~~sK~~~  158 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQ--EIPQTEKTPFYPRSPYAVAKLFG  158 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHH
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCC--CCCCCccCCCCCCChhHHHHHHH
Confidence            999864211  1234556678999999999998876543455555421 100000  00000011223334556555555


Q ss_pred             HHHHHHHHHHhCCC
Q 020049          171 VRANTFVAEVLGLD  184 (332)
Q Consensus       171 ~r~~~~la~~l~v~  184 (332)
                      .++...+++.++++
T Consensus       159 e~~~~~~~~~~~~~  172 (345)
T 2z1m_A          159 HWITVNYREAYNMF  172 (345)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHhCCc
Confidence            66666677777754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.21  E-value=4.1e-06  Score=72.60  Aligned_cols=102  Identities=18%  Similarity=0.108  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|+.++..|+..|+  +|+++++++..  ..++....  ..+..  +. ..+. +++.++|+||.++|.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~~--~~~~~~D~~-d~~~-~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGAT--VATLVKEPL-VLTE-ADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCTT--SEEEECCGG-GCCH-HHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCCC--ceEEecccc-cccH-hhcccCCEEEECCcc
Confidence            6899999999999999999999988  99999987522  12232211  12111  11 1122 678999999999987


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ...+.     ....|+...+.+++.+.+..  ..+|++|
T Consensus        73 ~~~~~-----~~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           73 PWGSG-----RGYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CTTSS-----CTHHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             CCCcc-----hhhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            52222     13568999999999988775  5555554

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.20  E-value=3.4e-06  Score=78.02  Aligned_cols=112  Identities=21%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcCC--CcE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLG-QP---QLENALTG--MDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~--aDi   91 (332)
                      |||.|+||+|++|++++..|+..|+  +|+++|++.   ......++....   ++..+.. -+   ++.+++++  +|+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d~   76 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPDS   76 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCCE
Confidence            6899999999999999999999887  999999753   222233343321   2222111 12   24466777  999


Q ss_pred             EEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           92 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        92 Vi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ||.+|+.....  ..+....+..|+.....+++.+.+....+.+|++|
T Consensus        77 vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           77 CFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            99999864210  11334566789999999999999887655566554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.18  E-value=3.6e-06  Score=73.01  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=70.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CC----CHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP----QLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~----d~~~a~~~aDiVi~~   95 (332)
                      |||.|+||+|++|+.++..|+..|+  +|++++++...     +...   ..+..+.. -+    ++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~-----~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQ-----VPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGG-----SCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccc-----hhhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            6899999999999999999999887  99999987521     1111   22222211 12    356778999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|....      +.+..|+.....+++.+++.... .+|++|.
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            986542      24466788888888888876533 4555543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.18  E-value=1.4e-05  Score=77.57  Aligned_cols=113  Identities=15%  Similarity=0.131  Sum_probs=76.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC---C-------------CCeEEEEeCCCCHH
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---T-------------GAVVRGFLGQPQLE   83 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---~-------------~~~v~~~~~~~d~~   83 (332)
                      ..+|+|||+ |+||..+|..|+..|+  +|+++|+++.+-  ..+....   .             ...++.   ++|+.
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv--~~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKI--ELLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTH--HHHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            468999999 9999999999999998  999999987321  1122211   0             123454   46888


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchHH
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVP  145 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t~  145 (332)
                      +++++||+||++.+.|...+..     .-++..+++.++.+.++. ++.+||.. |-|.+..-.
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~  138 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDE  138 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHH
T ss_pred             HHHhcCCEEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHH
Confidence            8999999999998888643111     223556666777777666 45555555 456655433

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.17  E-value=3.5e-06  Score=86.42  Aligned_cols=101  Identities=18%  Similarity=0.186  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHH--HH----HHhcCCC---------CCeEEEEeCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHMDT---------GAVVRGFLGQP   80 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~--~~----dl~~~~~---------~~~v~~~~~~~   80 (332)
                      +.+||+|||+ |.||+.+|..++..|+  +|+++|+++.   .+.  ..    .+.....         ..++..   ++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  386 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TL  386 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ES
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---EC
Confidence            3578999999 9999999999999998  9999999861   111  11    1111111         012443   34


Q ss_pred             CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCc
Q 020049           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS  142 (332)
Q Consensus        81 d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~  142 (332)
                      |+ +++++||+||++.              .++..+.+++...+.++++ ++++  +||...+
T Consensus       387 d~-~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~Il--asntStl  432 (715)
T 1wdk_A          387 SY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTI  432 (715)
T ss_dssp             SS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSS
T ss_pred             CH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCeEE--EeCCCCC
Confidence            65 7899999999995              4457777888888988885 6643  6665544

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.17  E-value=5.5e-06  Score=76.49  Aligned_cols=168  Identities=15%  Similarity=0.136  Sum_probs=96.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC---C---CCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN---P---LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~---~---~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~   87 (332)
                      |||.|+||+|++|++++..|+..   +   +  +|+++|++..   .....++..   ...+..+.. -+|   +.+++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~   75 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDA---DPRLRFVHGDIRDAGLLARELR   75 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTT---CTTEEEEECCTTCHHHHHHHTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhccc---CCCeEEEEcCCCCHHHHHHHhc
Confidence            68999999999999999999885   5   4  9999997541   111111211   123332221 122   446678


Q ss_pred             CCcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEE
Q 020049           88 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      ++|+||++++.....  ..+..+.+..|+.....+++.+.+.... .+|++|.. +.....  ...+......++...+|
T Consensus        76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~  152 (337)
T 1r6d_A           76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSID--SGSWTESSPLEPNSPYA  152 (337)
T ss_dssp             TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCS--SSCBCTTSCCCCCSHHH
T ss_pred             CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCC--CCCCCCCCCCCCCCchH
Confidence            999999998754211  0123456778999999999999877543 44444321 100000  00000011123334455


Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .+.....++...+++..|++..-++ +.++|..
T Consensus       153 ~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            5555556666666666776644443 4566754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.16  E-value=2.3e-06  Score=80.29  Aligned_cols=112  Identities=16%  Similarity=0.149  Sum_probs=74.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-C----CHHhhcCCCcE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P----QLENALTGMDL   91 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~----d~~~a~~~aDi   91 (332)
                      +++|||.|+||+|++|++++..|+.. ++  +|+.+|++....  .++...   ..+..+... +    .+.++++++|+
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~~d~   94 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVKH---ERMHFFEGDITINKEWVEYHVKKCDV   94 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGGS---TTEEEEECCTTTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhccC---CCeEEEeCccCCCHHHHHHHhccCCE
Confidence            44679999999999999999999887 77  999999875210  111111   223322211 2    24467789999


Q ss_pred             EEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           92 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        92 Vi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ||.+|+......  .+..+.+..|+.....+++.+.+..  ..+|.+|.
T Consensus        95 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           95 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            999987653211  2334556778888899999998887  45555543

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.14  E-value=3e-06  Score=79.37  Aligned_cols=115  Identities=16%  Similarity=0.097  Sum_probs=75.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEccCCc-HH-HHH------HHhcCCCCCeEEEEeC-CCC---HH
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNT-PG-VTA------DISHMDTGAVVRGFLG-QPQ---LE   83 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~--~~~~~ei~L~D~~~~-~~-~~~------dl~~~~~~~~v~~~~~-~~d---~~   83 (332)
                      .++|+|.|+||+|++|++++..|+.  .|+  +|+++|++.. .. ...      +..... ...+..+.. -+|   +.
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~   84 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLI-GFKGEVIAADINNPLDLR   84 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGT-TCCSEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhcc-ccCceEEECCCCCHHHHH
Confidence            3457999999999999999999998  777  9999998542 00 000      000000 111222111 122   33


Q ss_pred             hh-cCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           84 NA-LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        84 ~a-~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++ ..++|+||.+||..........+.+..|+.....+++.+.+....  +|++|
T Consensus        85 ~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S  137 (362)
T 3sxp_A           85 RLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS  137 (362)
T ss_dssp             HHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred             HhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence            44 689999999998654333456677789999999999999877544  44443

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.14  E-value=6.6e-06  Score=81.19  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=70.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +|||.|+||+|++|+.++..|+..|+  +|+.++++....           ..+.. .....+.++++++|+||++|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~-----------~~v~~-d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKP-----------GKRFW-DPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCT-----------TCEEC-CTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCc-----------cceee-cccchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999998  999999876211           00111 00112357789999999999865


Q ss_pred             CCC---CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049          100 RKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus       100 ~~~---g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ...   .....++...|+....++++.+.+...-..+|.+|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            321   12344566789999999999855444333455444

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.14  E-value=5.8e-06  Score=76.95  Aligned_cols=174  Identities=14%  Similarity=0.035  Sum_probs=99.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCC---CCeEEEEeC-CC---CHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLG-QP---QLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~---~~~v~~~~~-~~---d~~~a~~~a   89 (332)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++..  .....++.....   ...+..+.. -+   ++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            457999999999999999999999887  9999998651  112222211000   012332211 12   245678999


Q ss_pred             cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEee
Q 020049           90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus        90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      |+||.+++.....  ..+....+..|+.....+++.+.+.... .+|++|.. +..-..  ...+....-..+...+|.+
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~--~~~~~E~~~~~~~~~Y~~s  180 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHP--GLPKVEDTIGKPLSPYAVT  180 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCC--CSSBCTTCCCCCCSHHHHH
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCC--CCCCCCCCCCCCCChhHHH
Confidence            9999999854211  0223455678999999999998876443 44444321 100000  0000000001123345555


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      .....++...+++..|++..-++ +.++|...
T Consensus       181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~  212 (352)
T 1sb8_A          181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQ  212 (352)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEECceeCcCC
Confidence            55566666667777777655554 46777543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.13  E-value=5.5e-06  Score=80.90  Aligned_cols=117  Identities=17%  Similarity=0.168  Sum_probs=73.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC---------------CCCeEEEEeCCCCHHh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---------------TGAVVRGFLGQPQLEN   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---------------~~~~v~~~~~~~d~~~   84 (332)
                      +|||+|||+ |.||..+|..|+..+...+|+++|+++.+  +..+....               ....+..   ++++.+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~~d~~~~~--~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~~e   78 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVTVVDVNESR--INAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNIDD   78 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHHH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHHH
Confidence            479999999 99999999999887322299999997622  11221110               0012443   357778


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCch
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNST  143 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~  143 (332)
                      ++++||+||++.+.|........+ -.-++..+.+.++.+.++. |+.+|+.. |+|.+..
T Consensus        79 ~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~  138 (467)
T 2q3e_A           79 AIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAA  138 (467)
T ss_dssp             HHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHH
T ss_pred             HHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHH
Confidence            899999999998776543211000 0223456667777777665 45555554 6777764

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.12  E-value=5.7e-06  Score=77.05  Aligned_cols=174  Identities=17%  Similarity=0.100  Sum_probs=97.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcC--CCcEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLVI   93 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~--~aDiVi   93 (332)
                      |||.|+||+|++|++++..|+.. ++  +|+++|++...+....+.+......+..+.. -+|   +.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            68999999999999999999886 56  8999997541000011111111123333221 123   345566  899999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhh--CCC------cEEEEecCC-CCchHHHHHH--------HHHHh
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC--CPN------ATVNLISNP-VNSTVPIAAE--------VFKKA  154 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~--~p~------a~viv~tNP-~~~~t~~~~~--------~~~~~  154 (332)
                      ++|+.....  .....+.+..|+.....+++.+.+.  ..+      +.||++|.. +.....--..        .+...
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~  158 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence            999864310  1123456678999999999998877  433      356655431 1000000000        00001


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ...++...+|.+.....++...+++.+|++..-++ +.++|..
T Consensus       159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~  201 (361)
T 1kew_A          159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY  201 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCC
Confidence            11233445666666666676677777776654443 4566654

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.11  E-value=8.9e-06  Score=74.36  Aligned_cols=164  Identities=15%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC---CCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~---~~d~~~a~~~aDiVi~~~g   97 (332)
                      +||.|+||+|++|++++..|+..|.  .+++.+.......   ...    ..+..+..   ..++.++++++|+||.+++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~---~~~----~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~   72 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEE---FVN----EAARLVKADLAADDIKDYLKGAEEVWHIAA   72 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGG---GSC----TTEEEECCCTTTSCCHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChh---hcC----CCcEEEECcCChHHHHHHhcCCCEEEECCC
Confidence            5899999999999999999998883  4444443321100   001    11221110   1345688899999999998


Q ss_pred             CCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           98 VPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        98 ~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      .+..  ........+..|+.....+++.+.+.... .+|++|.- +.....  ...+......++...+|.+.....++.
T Consensus        73 ~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~--~~~~~E~~~~~~~~~Y~~sK~~~e~~~  149 (313)
T 3ehe_A           73 NPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAK--VIPTPEDYPTHPISLYGASKLACEALI  149 (313)
T ss_dssp             CCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCC--CCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            6532  12345666788999999999999887644 45555431 100000  000000011223345666666666677


Q ss_pred             HHHHHHhCCCCCCCc-eeEEEec
Q 020049          175 TFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       175 ~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ..+++.+|++..-++ +.++|..
T Consensus       150 ~~~~~~~g~~~~ilRp~~v~G~~  172 (313)
T 3ehe_A          150 ESYCHTFDMQAWIYRFANVIGRR  172 (313)
T ss_dssp             HHHHHHTTCEEEEEECSCEESTT
T ss_pred             HHHHHhcCCCEEEEeeccccCcC
Confidence            777777776544442 4567754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.10  E-value=5.6e-06  Score=71.91  Aligned_cols=98  Identities=21%  Similarity=0.230  Sum_probs=64.5

Q ss_pred             CCe-EEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-C---CCHHhhcCCCcEEE
Q 020049           20 GFK-VAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~k-I~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~a~~~aDiVi   93 (332)
                      +|| |.|+||+|++|+.++..|+ ..|+  +|+++++++. ....++...  ...+..+.. -   .++.++++++|+||
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~-~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLK-TRIPPEIID--HERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHH-HHSCHHHHT--STTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCcc-ccchhhccC--CCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            345 9999999999999999999 7888  9999998642 022222111  122332211 1   23456789999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +++|..             |+. .+.+++.+++.... .||++|
T Consensus        79 ~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           79 VGAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             ESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             EcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            998743             444 78888888776544 344443

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.10  E-value=5.8e-06  Score=76.40  Aligned_cols=172  Identities=15%  Similarity=0.042  Sum_probs=96.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcC--CCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QP---QLENALT--GMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~--~aDi   91 (332)
                      .|+|.|+||+|++|++++..|+..|+  +|+++|++.  ......++.... ...+..+.. -+   ++.++++  ++|+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence            46999999999999999999999998  999999876  222222222110 011222111 12   2445565  8999


Q ss_pred             EEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhh
Q 020049           92 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  169 (332)
Q Consensus        92 Vi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld  169 (332)
                      ||++|+.....  .....+.+..|+.....+++.+.+.....+|.+.|.-+.....-  ..+......++...+|.+...
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~--~~~~e~~~~~~~~~Y~~sK~~  159 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPER--SPIDETFPLSATNPYGQTKLM  159 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSS--SSBCTTSCCBCSSHHHHHHHH
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCC--CCCCCCCCCCCCChhHHHHHH
Confidence            99999864211  11234567789999999999998776444443333111100000  000000112233456666555


Q ss_pred             HHHHHHHHHHHhC-CCCCCCc-eeEEEec
Q 020049          170 VVRANTFVAEVLG-LDPRDVD-VPVVGGH  196 (332)
Q Consensus       170 ~~r~~~~la~~l~-v~~~~v~-~~v~G~h  196 (332)
                      ..++...+++.++ ++..-++ +.++|.+
T Consensus       160 ~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          160 AEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            5666666666654 4332232 4567754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.09  E-value=1.2e-05  Score=75.17  Aligned_cols=102  Identities=20%  Similarity=0.255  Sum_probs=68.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEccCCc-----HHHHHHHhcCC--------CCCeEEEEe
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFL   77 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~-------~~~ei~L~D~~~~-----~~~~~dl~~~~--------~~~~v~~~~   77 (332)
                      +.+|||+|||+ |.+|+.++..|+..|       +  +|.++|+++.     ......-.+..        ....+..  
T Consensus         6 m~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--   80 (354)
T 1x0v_A            6 MASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA--   80 (354)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence            34579999999 999999999998877       5  8999999764     33322211110        0122443  


Q ss_pred             CCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           78 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        78 ~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                       ++++.+++++||+||++...                ..+.++++.+..+. |+.+|+..+|...
T Consensus        81 -~~~~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 -VPDVVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             -ESSHHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             -EcCHHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence             34667889999999999521                13456666777665 5778887787554

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.09  E-value=2.9e-05  Score=70.92  Aligned_cols=102  Identities=19%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC----CCe-----EEEEeCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----GAV-----VRGFLGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----~~~-----v~~~~~~~d~~~a~~~a   89 (332)
                      ++|||+|||+ |.+|+.++..|...|+  +|.++|+++..  ...+.....    ...     +...+ ..+..++++++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   75 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAH--IEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQV   75 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCC
Confidence            3579999999 9999999999999888  99999987521  111211110    000     11110 11122334599


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      |+||++..                ...+.++++.+..+. |+.+|+..+|..+.
T Consensus        76 d~vi~~v~----------------~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           76 DLIIALTK----------------AQQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             SEEEECSC----------------HHHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             CEEEEEec----------------cccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            99999952                112456667777765 57788888887764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.08  E-value=5.3e-06  Score=77.51  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=77.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCCC
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALTGM   89 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~a   89 (332)
                      +.+.++|.|+||+|++|+.++..|+.. |. .+|+++|+++.  ......+..    ..+..+.. -.|   +.++++++
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~   92 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGV   92 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTC
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcC
Confidence            344579999999999999999999887 63 28999998762  222222321    23332221 123   45678999


Q ss_pred             cEEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           90 DLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        90 DiVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |+||.+|+....+.  ....+.+..|+.....+++.+.+.... .+|++|
T Consensus        93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            99999998654221  223566788999999999999877544 444443

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.06  E-value=4.6e-06  Score=77.28  Aligned_cols=169  Identities=17%  Similarity=0.127  Sum_probs=97.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcCCCc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QP---QLENALTGMD   90 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~aD   90 (332)
                      +|+|.|+||+|++|++++..|+..  ++  +|+++|++..   .....++.    ...+..+.. -+   ++.++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAIL----GDRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGC----SSSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhc----cCCeEEEECCCCCHHHHHHHhhcCC
Confidence            468999999999999999999887  55  9999998641   11111121    123333221 12   3456789999


Q ss_pred             EEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHH------HH----HHHHHhCCC
Q 020049           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPI------AA----EVFKKAGTY  157 (332)
Q Consensus        91 iVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~------~~----~~~~~~~~~  157 (332)
                      +||++|+.....  ..+..+.+..|+.....+++.+.+...  .+|++|.. +.....-      ..    ..+......
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~  155 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY  155 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence            999999865311  012345667899999999999988753  55555421 1000000      00    000011122


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ++...+|.+.....++...+++.+|++..-++ +.++|..
T Consensus       156 ~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~  195 (348)
T 1oc2_A          156 NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY  195 (348)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTT
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCC
Confidence            33345565555566666666776776543343 4456644

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.06  E-value=1.3e-05  Score=74.74  Aligned_cols=111  Identities=10%  Similarity=0.087  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-----CCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-----~aDiVi   93 (332)
                      .|+|.|+||+|++|++++..|+..| .  +|+++|.+........+.......++.   ....++++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceEeeecC---cHHHHHHHHhhcccCCCCEEE
Confidence            4789999999999999999999988 6  899999865211111121111111121   1123445565     599999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .+|+..........+.+..|+.....+++.+.+...  .+|++|
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            999865433344566778899999999999988765  444443

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.06  E-value=7.1e-06  Score=76.45  Aligned_cols=171  Identities=14%  Similarity=0.085  Sum_probs=96.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCC--CcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~--aDi   91 (332)
                      .|+|.|+||+|++|++++..|+..|+  +|+++|++.  .......+..   ...+..+.. -+|   +.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            47999999999999999999999887  999999876  2222221211   112222111 122   3455665  899


Q ss_pred             EEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC-CchHHHHHHHHHHhCCCCCCceEEeehh
Q 020049           92 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        92 Vi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~-~~~t~~~~~~~~~~~~~~~~kviG~~~l  168 (332)
                      ||++|+.+...  .....+.+..|+.....+++.+.+......+|++|... ..-..- ...+......++...+|.+..
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~-~~~~~E~~~~~~~~~Y~~sK~  162 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEW-IWGYRENEAMGGYDPYSNSKG  162 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCS-SSCBCTTSCBCCSSHHHHHHH
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCc-CCCCCCCCCCCCCCccHHHHH
Confidence            99999864211  12234566789999999999998875334555554321 000000 000000011223344555555


Q ss_pred             hHHHHHHHHHHHh---------CCCCCCCc-eeEEEec
Q 020049          169 DVVRANTFVAEVL---------GLDPRDVD-VPVVGGH  196 (332)
Q Consensus       169 d~~r~~~~la~~l---------~v~~~~v~-~~v~G~h  196 (332)
                      ...++...+++.+         |++..-++ +.++|..
T Consensus       163 ~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          163 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             HHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            5566666666554         55443332 4577753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.06  E-value=1e-05  Score=76.24  Aligned_cols=108  Identities=14%  Similarity=0.237  Sum_probs=67.5

Q ss_pred             hccCCCCCC-eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH-HHHHh-cCC------CCCeEEEEeCCCCHH
Q 020049           13 RAKGGAAGF-KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADIS-HMD------TGAVVRGFLGQPQLE   83 (332)
Q Consensus        13 ~~~~~~~~~-kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~-~~~------~~~~v~~~~~~~d~~   83 (332)
                      .+++.+++| ||+|||+ |.+|..++..|+..|+  +|.++|+++.... ..+.. ...      ....+..   +++..
T Consensus         7 ~~~~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~   80 (366)
T 1evy_A            7 SAKDELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVE   80 (366)
T ss_dssp             --CCCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHH
T ss_pred             hhhhHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceee---eCCHH
Confidence            456666666 9999999 9999999999998887  9999998752111 11111 000      0112443   24667


Q ss_pred             hhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHH----HHhhC-C-CcEEEEecCCCCc
Q 020049           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG----IAKCC-P-NATVNLISNPVNS  142 (332)
Q Consensus        84 ~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~----i~~~~-p-~a~viv~tNP~~~  142 (332)
                      +++++||+||++..                ...+.++++.    +..+. | +.+||.++|..+.
T Consensus        81 ~~~~~aDvVilav~----------------~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           81 KAYNGAEIILFVIP----------------TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             HHHTTCSSEEECCC----------------HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             HHHcCCCEEEECCC----------------hHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            88999999999951                1223444444    44433 4 6677777776543

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.06  E-value=1.7e-05  Score=71.99  Aligned_cols=99  Identities=17%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||.|+||+|++|++++..|...|+  +|+.+.+++..            ..+..  ...+ .++++++|.||.+++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~------------~~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGP------------GRITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCT------------TEEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCc------------Ceeec--chhh-HhhccCCCEEEEeccCcc
Confidence            7999999999999999999999999  99988765411            11221  0112 467899999999987532


Q ss_pred             CCC------CChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEe
Q 020049          101 KPG------MTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI  136 (332)
Q Consensus       101 ~~g------~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~  136 (332)
                      ...      ....++...|+...+.+.+.+.+... ..++|.+
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~  106 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLV  106 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEE
Confidence            111      11244566788889999988876653 3344443

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.05  E-value=2.1e-05  Score=66.91  Aligned_cols=103  Identities=15%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~aDiVi~~~   96 (332)
                      |||.|+||+|++|+.++..|+..|+  +|+++++++..     +.... ...+..+.. -+   ++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhh-----ccccc-CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            7999999999999999999999887  99999987521     11110 112222111 12   3457789999999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |......     ....|+.....+++.+.+.... .+|++|
T Consensus        76 ~~~~~~~-----~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLS-----PTTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCS-----CCCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCC-----ccchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            8643211     1246788888888888876544 445444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.05  E-value=5.9e-06  Score=73.90  Aligned_cols=93  Identities=16%  Similarity=0.235  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +++|||+|||+ |.+|+.++..|...++.  .+|.++|+++..       .   .  +..   .++..+++++||+||++
T Consensus         2 m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~---g--~~~---~~~~~~~~~~~D~vi~~   65 (262)
T 2rcy_A            2 MENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T---T--LNY---MSSNEELARHCDIIVCA   65 (262)
T ss_dssp             CSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S---S--SEE---CSCHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C---c--eEE---eCCHHHHHhcCCEEEEE
Confidence            45689999999 99999999999887721  389999987632       1   1  122   23567888999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                      .. +   .            .+.++++.+..+.++..++..+|.++.
T Consensus        66 v~-~---~------------~~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           66 VK-P---D------------IAGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             SC-T---T------------THHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             eC-H---H------------HHHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            53 1   1            134556667666677777777888765

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.04  E-value=9.7e-06  Score=76.48  Aligned_cols=171  Identities=14%  Similarity=0.060  Sum_probs=97.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe--CCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||.|+||+|++|++++..|+..|+  +|+++|++.....  .+...  ...+....  ...++.++++++|+||+++
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~--~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A  101 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM--TEDMF--CDEFHLVDLRVMENCLKVTEGVDHVFNLA  101 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS--CGGGT--CSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccch--hhccC--CceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence            357899999999999999999999887  9999998752110  01111  11111110  1123457789999999999


Q ss_pred             CCCCCC---CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHH---HHHHHHhC--CCCCCceEEeeh
Q 020049           97 GVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIA---AEVFKKAG--TYDPKKLLGVTM  167 (332)
Q Consensus        97 g~~~~~---g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~---~~~~~~~~--~~~~~kviG~~~  167 (332)
                      +.....   .....+.+..|+.....+++.+.+..... +|++|.. +.....-.   ...+....  ..++...++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK  180 (379)
T 2c5a_A          102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEK  180 (379)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHH
T ss_pred             eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHH
Confidence            864321   23345667789999999999998765444 4444321 11100000   00000000  112233455555


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ....++...+++..|++..-++ +.++|..
T Consensus       181 ~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~  210 (379)
T 2c5a_A          181 LATEELCKHYNKDFGIECRIGRFHNIYGPF  210 (379)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCceeCcC
Confidence            5555666666666676544443 4567754

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.03  E-value=1.7e-05  Score=73.24  Aligned_cols=114  Identities=17%  Similarity=0.108  Sum_probs=74.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcC--CC
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GM   89 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~--~a   89 (332)
                      ...+.|+|.|+||+|++|++++..|+..|+  +|+++|++.....  ++....  ..+..+.. -+|   +.++++  ++
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~   89 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFKP   89 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcCC
Confidence            344557999999999999999999999887  9999998641100  011111  22332221 123   446677  99


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |+||++||..........+ +..|+.....+++.+.+.... .+|++|
T Consensus        90 D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           90 THVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             SEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             CEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9999999865332112223 677899999999999876533 455544

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.02  E-value=2e-05  Score=72.94  Aligned_cols=111  Identities=13%  Similarity=0.013  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +++||.|+||+|++|++++..|+..|+  +|+++|++.  ......++..   ...+..+...- ...++.++|+||.+|
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~-~~~~~~~~d~vih~A   99 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRNVEHWIG---HENFELINHDV-VEPLYIEVDQIYHLA   99 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGGTGGGTT---CTTEEEEECCT-TSCCCCCCSEEEECC
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccchhhhhhhcc---CCceEEEeCcc-CChhhcCCCEEEECc
Confidence            347899999999999999999999887  999999864  1111111111   12344332221 124578999999998


Q ss_pred             CCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +.....  ..+....+..|+.....+++.+.+...  .+|++|
T Consensus       100 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A          100 SPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             SCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            754311  123445667899999999999988753  555554

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.02  E-value=1.8e-05  Score=70.47  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=63.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH------------HHHHhcCCCCCeEEEEeCCCCHHh
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------------TADISHMDTGAVVRGFLGQPQLEN   84 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~------------~~dl~~~~~~~~v~~~~~~~d~~~   84 (332)
                      ....+||+|||+ |.+|..++..|+..|+  +|+++|+++....            ..++....  .....    .+..+
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH--PHVHL----AAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS--TTCEE----EEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc--Cceec----cCHHH
Confidence            345689999999 9999999999999988  9999998753200            22232211  11121    24578


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      ++++||+||++....            .-.+.+.++.   ....++.+||.++||.
T Consensus        87 ~~~~aDvVilavp~~------------~~~~~~~~i~---~~~l~g~ivi~~s~~~  127 (245)
T 3dtt_A           87 VAAGAELVVNATEGA------------SSIAALTAAG---AENLAGKILVDIANPL  127 (245)
T ss_dssp             HHHHCSEEEECSCGG------------GHHHHHHHHC---HHHHTTSEEEECCCCE
T ss_pred             HHhcCCEEEEccCcH------------HHHHHHHHhh---hhhcCCCEEEECCCCC
Confidence            899999999985211            1122333331   2222788899999986

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.01  E-value=2.4e-05  Score=67.97  Aligned_cols=76  Identities=25%  Similarity=0.359  Sum_probs=57.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .+||+|||+ |.+|+.++..|...++  +|.++|+++.                           ++++||+||++..  
T Consensus        19 ~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~--   66 (209)
T 2raf_A           19 GMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP--   66 (209)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC--
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC--
Confidence            479999998 9999999999999887  9999997643                           4679999999852  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                                    ...++++++.+..+.++.+++..+|+.+
T Consensus        67 --------------~~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 --------------YPALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             --------------HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             --------------cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence                          1223445555554444778888899665

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.01  E-value=2.7e-05  Score=70.70  Aligned_cols=109  Identities=10%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC-----CcEEEEc
Q 020049           22 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG-----MDLVIIP   95 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-----aDiVi~~   95 (332)
                      ||.|+||+|++|++++..|+..| .  +|+++++........++.......++.   ....+.+++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999888 6  899999865211111222211111222   12234566664     9999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++.......+..+....|+.....+++.+.+...  .+|++|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865433344566778899999999999988765  445443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.01  E-value=2e-05  Score=71.59  Aligned_cols=98  Identities=11%  Similarity=0.170  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +++||+|||+ |.+|..++..|...|+ ..+|+++|+++..  ..++....   .+..   +++..+++++||+||++. 
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~---~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHT---TQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEE---ESCHHHHHSSCSEEEECS-
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEE---eCChHHHHhcCCeEEEEe-
Confidence            4579999999 9999999999998885 4589999998732  12222211   1232   235678899999999995 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhh-C-CCcEEEEecCCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-C-PNATVNLISNPVN  141 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~-p~a~viv~tNP~~  141 (332)
                       |  +            ..+.++++.+..+ . ++.+||..++.+.
T Consensus        72 -~--p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 -K--P------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             -C--G------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             -C--H------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence             1  1            1234555566655 3 5666665566554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.01  E-value=1.8e-05  Score=69.52  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVII   94 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~   94 (332)
                      +++++|.|+||+|++|++++..|+..  ++  +|+++++++..  ..++.. . ...+.. .....++.++++++|+||+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~--~~~~~~-~-~~~~~~D~~d~~~~~~~~~~~d~vi~   75 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQG--KEKIGG-E-ADVFIGDITDADSINPAFQGIDALVI   75 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHH--HHHTTC-C-TTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCc--hhhcCC-C-eeEEEecCCCHHHHHHHHcCCCEEEE
Confidence            34578999999999999999999988  55  99999986421  122211 1 111111 1111235577899999999


Q ss_pred             cCCCCCC------------CCCC---hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           95 PAGVPRK------------PGMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        95 ~~g~~~~------------~g~~---r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++|....            +...   .......|+.....+++.+.+.... .+|++|
T Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            9885421            1100   1134577888899999999877544 445443

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.01  E-value=2.3e-05  Score=74.11  Aligned_cols=101  Identities=13%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEccCCc-----HHHHHHHhcCC--------CCCeEEEEeCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFLGQ   79 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-------~~~ei~L~D~~~~-----~~~~~dl~~~~--------~~~~v~~~~~~   79 (332)
                      +|||+|||+ |.+|+.++..|+..|       +  +|.++|+++.     ......-.+..        ....+..   +
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---~   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---H   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---E
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---E
Confidence            468999999 999999999998877       5  8999998764     32222111100        0123443   3


Q ss_pred             CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHh----hC-CCcEEEEecCCCCc
Q 020049           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK----CC-PNATVNLISNPVNS  142 (332)
Q Consensus        80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~----~~-p~a~viv~tNP~~~  142 (332)
                      +|..+++++||+||++..                ...+.++++.+..    +. |+.+||..+|..+.
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            466788999999999941                1356677777876    55 57788777876543

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.00  E-value=1.2e-05  Score=73.45  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=58.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC--CcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVi~~~g   97 (332)
                      .|||.|+||+|++|++++..|+..|+  +|+++|++....   .    ....++..   ..++.+++++  +|+||+++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~d---~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLLD---SNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCCC---HHHHHHHHHhhCCCEEEECCc
Confidence            46899999999999999999999887  999999754220   0    00111221   2234566764  899999998


Q ss_pred             CCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        98 ~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123445567799999999999987753  555554

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.00  E-value=2.5e-05  Score=72.30  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=72.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHH----HhcCCCCCeEEE--EeCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTGAVVRG--FLGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d----l~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi   93 (332)
                      +|||+|||+ |.+|+.++..|...|.  +|.++|+++. ....+    +.... ......  ...+++.+++.+++|+||
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~~-~g~~~~~~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSAT-LGDYTFRPAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEETT-TCCEEECCSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeecC-CCcEEEeeeeeECCHHHcCCCCCEEE
Confidence            479999999 9999999999999887  9999998762 11111    11101 111111  111235555545999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE-eehh
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML  168 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG-~~~l  168 (332)
                      ++.-..    .            +.++++.+..+. |+..|+.+.|-.+..-.     +.+.  +|..+|++ ++..
T Consensus        77 lavK~~----~------------~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~-----l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           77 LCIKVV----E------------GADRVGLLRDAVAPDTGIVLISNGIDIEPE-----VAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             ECCCCC----T------------TCCHHHHHTTSCCTTCEEEEECSSSSCSHH-----HHHH--STTSCEEEEEEEE
T ss_pred             EecCCC----C------------hHHHHHHHHhhcCCCCEEEEeCCCCChHHH-----HHHH--CCCCcEEEEEEEe
Confidence            995322    1            112344455444 57788888998876532     2343  55667764 4544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.99  E-value=4e-06  Score=78.74  Aligned_cols=93  Identities=19%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||.|+||+|++|++++..|+..|.. +|+.+|++.                     ...++.++++++|+||.+++...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~~---------------------d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQT---------------------KEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTTC---------------------CHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCCC---------------------CHHHHHHHhccCCEEEECCcCCC
Confidence            68999999999999999999887753 888888740                     11245677788999999988653


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .  ....+....|+....++++.+++......+|.+|
T Consensus        59 ~--~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 P--EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             T--TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             C--CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            2  2233445678888999999998776554555553

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=97.99  E-value=3.7e-05  Score=75.07  Aligned_cols=116  Identities=13%  Similarity=0.063  Sum_probs=77.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC---CCCcEEEEEccCCcHH-HHHHHhcCCC--------------CCeEEEEeCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKIN---PLVSVLHLYDVVNTPG-VTADISHMDT--------------GAVVRGFLGQ   79 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~---~~~~ei~L~D~~~~~~-~~~dl~~~~~--------------~~~v~~~~~~   79 (332)
                      .++++|.|+||+|++|+.++..|+..   |.  +|+++++++... ....+.+...              ...+..+.+.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            44679999999999999999999887   55  999999876211 1111211100              1234433221


Q ss_pred             -C---------CHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           80 -P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        80 -~---------d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                       +         ++.++++++|+||.+|+....  ....+.+..|+....++++.+.+.....+|.+.|
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence             1         245667899999999986543  3334567889999999999998766555555444

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.98  E-value=0.00013  Score=65.64  Aligned_cols=118  Identities=18%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++........+..+. .-+|.   .+++      
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999988  899999875  222333343322223343322 12332   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCC-CcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCP-NATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p-~a~viv~tN  138 (332)
                       .+.|+||.++|......   .+   ....+..|+..    .+.+.+.+.+... .+.||+++.
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence             37999999998653221   12   23345566666    7777777776653 466777654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.95  E-value=2.2e-05  Score=71.30  Aligned_cols=64  Identities=8%  Similarity=0.132  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||+ |.+|..++..|...|+  +|+++|+++....  .+.+..    +..   .+++++++++||+||++.
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAALG----AER---AATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEEc
Confidence            79999999 9999999999999998  9999999862211  122211    222   346788899999999985

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.95  E-value=3e-05  Score=71.50  Aligned_cols=166  Identities=14%  Similarity=0.067  Sum_probs=94.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-C----CHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P----QLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~----d~~~a~~~aDiVi~   94 (332)
                      |||.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+... +    .+.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGG--GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchH--HHhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999987 67  899999876211  11111   1223322111 1    24457789999999


Q ss_pred             cCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC----CC---CCceEEe
Q 020049           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT----YD---PKKLLGV  165 (332)
Q Consensus        95 ~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~----~~---~~kviG~  165 (332)
                      +|+.....  ..+..+.+..|+.....+++.+.+..  ..+|++|... +........+.....    .|   +...+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS~~-v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~  150 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSE-VYGMCSDKYFDEDHSNLIVGPVNKPRWIYSV  150 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGG-GGBTCCCSSBCTTTCCCBCCCTTCGGGHHHH
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEecHH-HcCCCCCCCcCCcccccccCcccCcccccHH
Confidence            98864311  11334556778888889999888765  4566655421 000000000000000    00   1114555


Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      +.....++...+++..|++..-++ +.++|..
T Consensus       151 sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~  182 (345)
T 2bll_A          151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR  182 (345)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECSEECSS
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEcCCcccCCC
Confidence            555556666666666676654443 4567754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.94  E-value=4.6e-05  Score=68.84  Aligned_cols=173  Identities=15%  Similarity=0.096  Sum_probs=94.7

Q ss_pred             cchhhHHhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-
Q 020049            2 EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-   78 (332)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-   78 (332)
                      +++.+|.+......-..+.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+.. 
T Consensus        15 ~~~~~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D   90 (275)
T 4imr_A           15 TENLYFQSMRLETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGD   90 (275)
T ss_dssp             ---CCSCTTSHHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECC
T ss_pred             ccccccccccccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEec
Confidence            45667766544333334456899999999999999999999998  899999987  344444454332  22332211 


Q ss_pred             CCC---HHhhc------CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecCC
Q 020049           79 QPQ---LENAL------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        79 ~~d---~~~a~------~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tNP  139 (332)
                      -+|   .++.+      ...|++|..||......   .+.   ...+..|+....    .+.+.+.+. ..+.||++|..
T Consensus        91 v~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~  169 (275)
T 4imr_A           91 LSEAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGSI  169 (275)
T ss_dssp             TTSTTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCH
Confidence            122   22222      37899999998753221   222   223445654444    444444443 35667777542


Q ss_pred             CCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       140 ~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ....            ..+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       170 ~~~~------------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  209 (275)
T 4imr_A          170 NQLR------------PKSVVTAYAATKAAQHNLIQSQARDFA--GDNVLLNTL  209 (275)
T ss_dssp             GGTS------------CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HhCC------------CCCCchhhHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            2111            112112244443334456677777774  344544433

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.93  E-value=6.7e-06  Score=74.16  Aligned_cols=96  Identities=22%  Similarity=0.216  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|+..|+  +|+.+++.+     .|+.+            ..++.++++  ++|+||++++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d------------~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITN------------ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            5899999999999999999998887  999998732     11111            113445666  69999999986


Q ss_pred             CCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .....  ....+....|+.....+++.+.+...  .+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            53211  34556678899999999999988765  455443

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.93  E-value=7.3e-06  Score=74.07  Aligned_cols=98  Identities=21%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~   96 (332)
                      .++||.|+||+|++|++++..|+..|+  +|+.+|++.     .|+.+            ..++.++++  ++|+||.++
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vih~A   71 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVINCA   71 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEEECC
Confidence            467999999999999999999998887  999998752     11111            113456666  799999999


Q ss_pred             CCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +.....  ..+..+.+..|+.....+++.+.+...  .+|++|
T Consensus        72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           72 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            864211  123445677899999999999988754  555554

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.93  E-value=2.6e-05  Score=67.38  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+|+||+|.+|+.++..|...++  +|.++|+++.  .....++........+..    +++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999449999999999998887  9999998752  111111110000012331    2567889999999998521


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                                      ....++.+.+.+..++.+++..+|+.+
T Consensus        75 ----------------~~~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 ----------------EHAIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ----------------HHHHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ----------------hhHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence                            112344444444335778888888776

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.92  E-value=2.7e-05  Score=70.70  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ++|||+|||+ |.+|+.++..|...++..+|+++|+++...  ..+.......  ..   ++++++++++||+||++.. 
T Consensus         5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~aDvVilavp-   75 (290)
T 3b1f_A            5 EEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSR--DIALERGIVD--EA---TADFKVFAALADVIILAVP-   75 (290)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHH--HHHHHTTSCS--EE---ESCTTTTGGGCSEEEECSC-
T ss_pred             ccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHH--HHHHHcCCcc--cc---cCCHHHhhcCCCEEEEcCC-
Confidence            4579999998 999999999998775434899999875221  1122221111  21   2345677899999999952 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhh-C-CCcEEEEecCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-C-PNATVNLISNP  139 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~-p~a~viv~tNP  139 (332)
                                     .....++++.+..+ . |+.+|+.++|.
T Consensus        76 ---------------~~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           76 ---------------IKKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             ---------------HHHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                           11235666667665 4 56666655553

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.91  E-value=1.3e-05  Score=74.08  Aligned_cols=119  Identities=21%  Similarity=0.212  Sum_probs=77.1

Q ss_pred             hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC----C
Q 020049           11 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----Q   79 (332)
Q Consensus        11 ~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~-------~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~   79 (332)
                      .+|..-+.+.|+|.|+||+|++|++++..|+..|       .  +|+++|++......      .....+..+..    .
T Consensus         5 ~~~~~~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~--~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~   76 (342)
T 2hrz_A            5 SGRENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVE--KFTLIDVFQPEAPA------GFSGAVDARAADLSAP   76 (342)
T ss_dssp             CSCCCSCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEE--EEEEEESSCCCCCT------TCCSEEEEEECCTTST
T ss_pred             cCCCCCCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCc--eEEEEEccCCcccc------ccCCceeEEEcCCCCH
Confidence            3455555667899999999999999999998887       5  89999986521100      01233333221    1


Q ss_pred             CCHHhhc-CCCcEEEEcCCCCCCC-CCChhhhHhhhHHHHHHHHHHHHhhC----CCcEEEEec
Q 020049           80 PQLENAL-TGMDLVIIPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLIS  137 (332)
Q Consensus        80 ~d~~~a~-~~aDiVi~~~g~~~~~-g~~r~~~~~~n~~~~~~i~~~i~~~~----p~a~viv~t  137 (332)
                      .++.+++ .++|+||++|+..... .......+..|+.....+++.+.+..    +...+|++|
T Consensus        77 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           77 GEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             THHHHHHHTCCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             HHHHHHHhcCCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            2344566 4899999999864310 11234456778888899999888765    234455553

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.91  E-value=1.2e-05  Score=75.98  Aligned_cols=173  Identities=12%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH------------------HHHHHhcCCCCCeEEEEeC-
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTGAVVRGFLG-   78 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~------------------~~~dl~~~~~~~~v~~~~~-   78 (332)
                      .+.++|.|+||+|++|++++..|+..|+  +|+++|......                  ...++.... ...+..+.. 
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~D   85 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGD   85 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECC
Confidence            3567999999999999999999999888  999998753110                  111111000 112222211 


Q ss_pred             CCC---HHhhcCC--CcEEEEcCCCCCCC--CCCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 020049           79 QPQ---LENALTG--MDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (332)
Q Consensus        79 ~~d---~~~a~~~--aDiVi~~~g~~~~~--g~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~  148 (332)
                      -+|   +.+++++  +|+||++||.....  ..+.   ...+..|+.....+++.+.+......+|++|... +...  .
T Consensus        86 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~-vyg~--~  162 (404)
T 1i24_A           86 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMG-EYGT--P  162 (404)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGG-GGCC--C
T ss_pred             CCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHH-HhCC--C
Confidence            123   3456677  99999999864211  1111   1255779999999999998876533566654421 1000  0


Q ss_pred             HHHHHh---------------CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          149 EVFKKA---------------GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       149 ~~~~~~---------------~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ..-...               ...++...+|.+.....++...+++.+|++..-++ +.++|..
T Consensus       163 ~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~  226 (404)
T 1i24_A          163 NIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVK  226 (404)
T ss_dssp             SSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSC
T ss_pred             CCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCC
Confidence            000000               01122334555555555565566666776654443 5677754

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.91  E-value=1.9e-05  Score=75.16  Aligned_cols=103  Identities=17%  Similarity=0.336  Sum_probs=68.5

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCC------CcEEEEEccCC-c--HHHHHHHh--cCC--------CCCeEEE
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPL------VSVLHLYDVVN-T--PGVTADIS--HMD--------TGAVVRG   75 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~------~~ei~L~D~~~-~--~~~~~dl~--~~~--------~~~~v~~   75 (332)
                      +-..+|.||+|||| |.-|+++|..|..++.      ..+|.|+..++ .  +..+..+.  |..        .+..+..
T Consensus        29 ~~~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~  107 (391)
T 4fgw_A           29 KAAEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA  107 (391)
T ss_dssp             ----CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE
T ss_pred             cccCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE
Confidence            33456789999999 9999999999987642      13688887765 1  22233232  221        1234554


Q ss_pred             EeCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEec
Q 020049           76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  137 (332)
Q Consensus        76 ~~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~t  137 (332)
                         ++|+.+++++||+||+..  |              .+.++++++++..+.+ +..+|.++
T Consensus       108 ---t~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          108 ---NPDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCL  151 (391)
T ss_dssp             ---ESCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred             ---eCCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEec
Confidence               468999999999999984  3              3456778888887764 56666665

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.91  E-value=5.5e-05  Score=69.15  Aligned_cols=90  Identities=20%  Similarity=0.296  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      ++||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   +++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEAG----ATL---ADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHTT----CEE---CSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CEE---cCCHHHHHh-CCEEEEECCCh
Confidence            468999999 9999999999999888  8999999872211  122111    222   357788888 99999985211


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                                     ..++++++.+.+.. |+.+||..|
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~s  105 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHS  105 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECS
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeC
Confidence                           22344556666555 556665554

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.91  E-value=2.8e-05  Score=71.65  Aligned_cols=66  Identities=12%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||+|||+ |.||..++..|+..|+  +|+++|+++....  ++....    +..   .+++.+++++||+||++.
T Consensus        20 ~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           20 HMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----ASV---CESPAEVIKKCKYTIAML   85 (310)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CeE---cCCHHHHHHhCCEEEEEc
Confidence            4579999999 9999999999999998  9999999862211  122211    122   346788899999999985

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.91  E-value=8.2e-06  Score=74.71  Aligned_cols=167  Identities=13%  Similarity=0.093  Sum_probs=95.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCC--CcE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDL   91 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~--aDi   91 (332)
                      .+.++|.|+||+|++|++++..|+..|+  +|+++|++.....   +       .+..+.. -+|   +.+++++  .|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~---l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEAKL---P-------NVEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTCCC---T-------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccc---c-------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence            4567999999999999999999999887  9999998752110   1       2222211 122   3455665  899


Q ss_pred             EEEcCCCCCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC-CchHHHHHHHHHHhCCCCCCceEEeehh
Q 020049           92 VIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        92 Vi~~~g~~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~-~~~t~~~~~~~~~~~~~~~~kviG~~~l  168 (332)
                      ||++|+....  ......+.+..|+.....+++.+.+......+|++|... .....--...+......++...+|.+..
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~  157 (321)
T 2pk3_A           78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKA  157 (321)
T ss_dssp             EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHH
T ss_pred             EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHH
Confidence            9999986431  112345667889999999999997664344555554321 1000000000000011223344555555


Q ss_pred             hHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          169 DVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ...++...+++..|++..-++ +.++|..
T Consensus       158 ~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  186 (321)
T 2pk3_A          158 SVGMLARQYVKAYGMDIIHTRTFNHIGPG  186 (321)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeCcccCcC
Confidence            555666666666665543333 3566654

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.90  E-value=3.1e-05  Score=66.42  Aligned_cols=106  Identities=11%  Similarity=0.071  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC----CCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~aDiVi~~   95 (332)
                      .|||.|+||+|++|+.++..|+..+...+|+++++++..      .    ...+..+...    .++.+++  +|+||.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~----~~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------E----HPRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------C----CTTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------c----CCCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999998865589999987632      0    1122221111    1222333  8999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|.......+..++...|+.....+++.+.+.... .+|++|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98653222345566778999999999998876543 4555543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.90  E-value=1.4e-05  Score=74.44  Aligned_cols=100  Identities=21%  Similarity=0.262  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC-----CCeEEE-EeCCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVRG-FLGQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-----~~~v~~-~~~~~d~~~a~~~aDiV   92 (332)
                      ..|||+|||+ |.+|+.++..|...|+  +|.++|+++   ....+.....     ...... +..+++.+ +++++|+|
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V   74 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRATHDAA-ALGEQDVV   74 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEEESCHH-HHCCCSEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCCCCEE
Confidence            3579999999 9999999999999887  899999743   1222222110     000110 11134654 47999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                      |++..                ...+.++++.+..+. |+..|+.++|.+.
T Consensus        75 ilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi~  108 (335)
T 3ghy_A           75 IVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGVP  108 (335)
T ss_dssp             EECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSSC
T ss_pred             EEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            99952                123556677777665 6788888899953

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.90  E-value=9.4e-05  Score=69.01  Aligned_cols=160  Identities=16%  Similarity=0.054  Sum_probs=86.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCC--CCCeEEEEeCC-CC---HHhhcCC--C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TGAVVRGFLGQ-PQ---LENALTG--M   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~--~~~~v~~~~~~-~d---~~~a~~~--a   89 (332)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++...   ....++....  ....+..+... +|   +.+++++  .
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence            5899999999999999999999887  99999986521   1111121100  01233332211 22   3345554  6


Q ss_pred             cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCC--cEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEE
Q 020049           90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN--ATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~--a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |+||++||.....  .......+..|+.....+++.+.+....  ..+|++|.. +.....  ...+......++...+|
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~--~~~~~E~~~~~~~~~Y~  157 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQ--EIPQKETTPFYPRSPYA  157 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCC--SSSBCTTSCCCCCSHHH
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCC--CCCCCccCCCCCCChHH
Confidence            9999999864321  1233445677888999999998877542  456655431 100000  00000001122233455


Q ss_pred             eehhhHHHHHHHHHHHhCCC
Q 020049          165 VTMLDVVRANTFVAEVLGLD  184 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~  184 (332)
                      .+.....++...+++.++++
T Consensus       158 ~sK~~~e~~~~~~~~~~~~~  177 (372)
T 1db3_A          158 VAKLYAYWITVNYRESYGMY  177 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            55555556666667777765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.90  E-value=4e-05  Score=70.84  Aligned_cols=93  Identities=18%  Similarity=0.222  Sum_probs=60.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHh-hcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLEN-ALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~-a~~~aDiVi~~~g   97 (332)
                      .+||+|||+ |.+|..++..|...|+..+|+++|+++. ...+.+   .....  ..   ++++++ ++++||+||++..
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~---~G~~~--~~---~~~~~~~~~~~aDvVilavp  103 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD---LGIID--EG---TTSIAKVEDFSPDFVMLSSP  103 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH---TTSCS--EE---ESCTTGGGGGCCSEEEECSC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH---CCCcc--hh---cCCHHHHhhccCCEEEEeCC
Confidence            379999998 9999999999999887668999999762 112221   11101  11   235567 8999999999852


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                      ..                .+.++++.+..+. |+++|+.++
T Consensus       104 ~~----------------~~~~vl~~l~~~l~~~~iv~d~~  128 (314)
T 3ggo_A          104 VR----------------TFREIAKKLSYILSEDATVTDQG  128 (314)
T ss_dssp             GG----------------GHHHHHHHHHHHSCTTCEEEECC
T ss_pred             HH----------------HHHHHHHHHhhccCCCcEEEECC
Confidence            11                1234445555554 577665544

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.89  E-value=0.00028  Score=63.02  Aligned_cols=156  Identities=20%  Similarity=0.230  Sum_probs=88.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  .+....++.... ..++..+. .-+|.   ++++       
T Consensus        10 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A           10 GRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  999999886  333445555432 12333322 12332   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|++||.....   ..+.   ...+..|+.....+.    +.+.+.. .+.||++|......           .+
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~-----------~~  154 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSITGPI-----------TG  154 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSBTTT-----------BC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhcc-----------CC
Confidence            3789999999865322   1222   223455655554444    4444333 45666665433221           12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                      .|..-.++.+......+.+.+|..++  +..|++..
T Consensus       155 ~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~  188 (262)
T 3pk0_A          155 YPGWSHYGATKAAQLGFMRTAAIELA--PHKITVNA  188 (262)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEE
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHH--hhCcEEEE
Confidence            33333344443344456677777764  33454333

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.89  E-value=1.6e-05  Score=72.78  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=70.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~   96 (332)
                      +.|||.|+||+|++|++++..|+..|+  +|++++.+..    .|+.+            ..++.++++  ++|+||+++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~a   63 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLAA   63 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEcC
Confidence            347999999999999999999999887  8888876421    11111            123456677  999999999


Q ss_pred             CCCCCC---CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           97 GVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        97 g~~~~~---g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +.....   ..+..+.+..|+.....+++.+.+.... .+|.+|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  107 (321)
T 1e6u_A           64 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGS  107 (321)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence            864311   1233456678999999999999876533 4555543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.87  E-value=3.2e-05  Score=71.47  Aligned_cols=111  Identities=17%  Similarity=0.067  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCC--CcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALTG--MDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~--aDiV   92 (332)
                      ++|+|.|+||+|++|++++..|+..|+  +|+++|++.... ...+...   ..+..+.. -+|   +.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            457999999999999999999999887  999999865110 0011111   22332221 123   3456777  9999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |.+|+..........+ +..|+.....+++.+.+.... .+|++|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9999865332111222 677899999999998875433 455543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.87  E-value=0.00016  Score=63.88  Aligned_cols=152  Identities=14%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++.+       
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999976  233334444322  2333322 12232   2222       


Q ss_pred             CCCcEEEEcCCCCC--C----CCCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPR--K----PGMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        87 ~~aDiVi~~~g~~~--~----~g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                      ...|++|++||...  .    ...+   ....+..|+..    .+.+.+.+.+.. .+.||++|.....           
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~-----------  152 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAW-----------  152 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCcccc-----------
Confidence            38899999998731  1    1122   23345667666    556666665543 5667777653321           


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                          +....++.+......+.+.++..++  +..|++..+
T Consensus       153 ----~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          153 ----LYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             ----CCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence                1223466665555567778888775  344544433

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.87  E-value=8.2e-05  Score=68.81  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=50.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.|||+|||+ |.+|..++..|+..|+  +|+++|+++.  .+..+....    +..   .+++++++++||+||++.
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~---~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATI---HEQARAAARDADIVVSML   95 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEE---ESSHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEe---eCCHHHHHhcCCEEEEEC
Confidence            4579999999 9999999999999998  9999998752  223333322    232   246788999999999985

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.87  E-value=3.7e-05  Score=70.27  Aligned_cols=115  Identities=9%  Similarity=-0.036  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CCcH-HHHHHHhcCCC-CCeEEEEe----CCCCHHhhcCCCcEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTP-GVTADISHMDT-GAVVRGFL----GQPQLENALTGMDLVI   93 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~~-~~~~dl~~~~~-~~~v~~~~----~~~d~~~a~~~aDiVi   93 (332)
                      +||.|+||+|++|++++..|+..|+  +|+.+++ +... .....+..... ...+..+.    ...++.++++++|+||
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            4899999999999999999999988  8888876 4310 00001111100 01222211    1234567889999999


Q ss_pred             EcCCCCCCCCCC-hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++|+.......+ ..+.+..|+.....+++.+.+...-..+|++|
T Consensus        80 h~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           80 HTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             ECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            998632111111 23367889999999999988762123455543

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.86  E-value=3.4e-05  Score=71.50  Aligned_cols=103  Identities=15%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      .-+++|||+|||+ |.||..++..|...|.  ..+|.++|+++.......+....    +..   +++..+++++||+||
T Consensus        18 ~~~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~~---~~~~~e~~~~aDvVi   89 (322)
T 2izz_A           18 LYFQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VKL---TPHNKETVQHSDVLF   89 (322)
T ss_dssp             ----CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CEE---ESCHHHHHHHCSEEE
T ss_pred             hccCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CEE---eCChHHHhccCCEEE
Confidence            3445689999999 9999999999998872  13899999875311222232211    222   235578889999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      ++.. |               ..+.++++.+..+. |+.+||.++|.+..
T Consensus        90 lav~-~---------------~~~~~vl~~l~~~l~~~~ivvs~s~gi~~  123 (322)
T 2izz_A           90 LAVK-P---------------HIIPFILDEIGADIEDRHIVVSCAAGVTI  123 (322)
T ss_dssp             ECSC-G---------------GGHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred             EEeC-H---------------HHHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence            9952 1               12344555666555 57777777887764

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.86  E-value=2.3e-05  Score=72.53  Aligned_cols=114  Identities=18%  Similarity=0.119  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c-------HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-------PGVTADISHMDTGAVVRGFL-GQPQ---LENALT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-------~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~   87 (332)
                      .|+|.|+||+|++|++++..|+..|+  +|+++|++. .       .....++.... ...+..+. .-+|   +.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHH
Confidence            46899999999999999999999887  899998643 1       11222232100 01122111 1123   345566


Q ss_pred             --CCcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           88 --GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                        ++|+||++|+.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence              899999998754211  1233456778999999999998876544 444443

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=97.85  E-value=7.5e-06  Score=74.57  Aligned_cols=167  Identities=14%  Similarity=0.096  Sum_probs=95.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcC--CCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVi~   94 (332)
                      .|||.|+||+|++|++++..|+..  ++  +|+++|++.......  ...   ..+.. .....++.++++  ++|+||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~---~~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSG---PFEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSS---CEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCC---ceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            468999999999999999999887  66  899999876221111  111   11111 100113445666  8999999


Q ss_pred             cCCCCCCC-CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhHHH
Q 020049           95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  172 (332)
Q Consensus        95 ~~g~~~~~-g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r  172 (332)
                      +++..... ..+..+....|+.....+++.+.+.... .+|++|.. +.....- ...........+...+|.+.....+
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~-~~~~~e~~~~~~~~~Y~~sK~~~e~  152 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTP-KENTPQYTIMEPSTVYGISKQAGER  152 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSC-SSSBCSSCBCCCCSHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCC-CCCccccCcCCCCchhHHHHHHHHH
Confidence            99754211 1234456778999999999999876433 44444321 1100000 0000000001223445555555666


Q ss_pred             HHHHHHHHhCCCCCCCc-eeEEEe
Q 020049          173 ANTFVAEVLGLDPRDVD-VPVVGG  195 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~  195 (332)
                      +...+++..|++..-++ +.++|.
T Consensus       153 ~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          153 WCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHhcCCcEEEEeCCeEecC
Confidence            66666677777655554 567774

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.85  E-value=5.3e-05  Score=66.89  Aligned_cols=157  Identities=15%  Similarity=0.140  Sum_probs=88.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.++|.|+||+|++|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|   ++++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999988  899999876  222333443322  2233221 1123   223333     


Q ss_pred             --CCcEEEEcCCCCCCC--CCC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 --GMDLVIIPAGVPRKP--GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~--g~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                        +.|+||+++|.....  ..+   ....+..|+.....+.+.+    .+. ..+.||++|.....            .+
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~~~------------~~  152 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKN-GGGVILTITSMAAE------------NK  152 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT------------CC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhc------------CC
Confidence              899999999864321  222   2334556666655555544    333 34566666543211            11


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .++.-.++.+......+.+.+++.++  +..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~v~  188 (255)
T 1fmc_A          153 NINMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCCcccHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence            22223344444344456666666663  3445554444

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.85  E-value=1.2e-05  Score=70.54  Aligned_cols=115  Identities=19%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +.++|.|+||+|++|+.++..|+..|...+|+++|+++....  ++..... ..+. ......++.++++++|+||+++|
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~--~~~~~~~-~~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--EEAYKNV-NQEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--SGGGGGC-EEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc--ccccCCc-eEEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            346899999999999999999998886558999998762100  0000000 0111 01112345677889999999998


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      .... +....+++..|+.....+++.+.+.... .||++|.
T Consensus        94 ~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS  132 (242)
T 2bka_A           94 TTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSS  132 (242)
T ss_dssp             CCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             cccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEcc
Confidence            5421 1123455667888888999888776533 4555543

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.84  E-value=9.6e-05  Score=64.97  Aligned_cols=157  Identities=13%  Similarity=0.154  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC-----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT-----   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~-----   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++ +.++  ......++....  .++..+. .-+|.   +++++     
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999998  89998 4544  222333343322  2333222 12232   22232     


Q ss_pred             --CCcEEEEcCCCCCCC------CCChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 --GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~------g~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                        ..|+||+++|.....      .......+..|+.....+.+.+.++   .+.+.||++|......            +
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~------------~  148 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGII------------G  148 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcc------------C
Confidence              799999999865321      1223445566776655555544432   1346677776543221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+......+.+.+++.++  +..+++.++.
T Consensus       149 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  184 (247)
T 2hq1_A          149 NAGQANYAASKAGLIGFTKSIAKEFA--AKGIYCNAVA  184 (247)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCcHhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEE
Confidence            12222344443334455666666664  3345555554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.84  E-value=0.00011  Score=65.29  Aligned_cols=155  Identities=15%  Similarity=0.164  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-------C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------G   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------~   88 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++......++....  ..+..+. .-+|   .+++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999998  899999876433334444321  2333221 1123   233344       8


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      .|++|++||......   .+   ....+..|+.    ..+.+.+.+.+.. .+.||++|......            +.|
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~~  146 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASVHGLV------------GST  146 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS------------CCT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCchhcc------------CCC
Confidence            999999998653211   12   2234455665    5566666665543 45677766432211            122


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..-.++.+......+.+.++..+.  +..|++.++
T Consensus       147 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  179 (255)
T 2q2v_A          147 GKAAYVAAKHGVVGLTKVVGLETA--TSNVTCNAI  179 (255)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHTT--TSSEEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            222233333333456667777764  445544444

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.83  E-value=4.6e-05  Score=68.29  Aligned_cols=94  Identities=14%  Similarity=0.192  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +|||+|||+ |.+|+.++..|...|+  + +.++|+++...  ..+....   .+..   .++++++++++|+||++.. 
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~--~~~~~~~---g~~~---~~~~~~~~~~~Dvvi~av~-   77 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEESA--RELAQKV---EAEY---TTDLAEVNPYAKLYIVSLK-   77 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHHH--HHHHHHT---TCEE---ESCGGGSCSCCSEEEECCC-
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHH--HHHHHHc---CCce---eCCHHHHhcCCCEEEEecC-
Confidence            479999999 9999999999988776  5 89999875221  1122110   1122   2356688899999999841 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                                   .+  ...++++.+.+.. ++.+|+..++-.
T Consensus        78 -------------~~--~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           78 -------------DS--AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             -------------HH--HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             -------------HH--HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                         11  2356667777666 577777776543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.83  E-value=3.1e-05  Score=72.02  Aligned_cols=99  Identities=19%  Similarity=0.194  Sum_probs=63.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC---CCC----eEEEEeCCCCHHhhcCCC
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---TGA----VVRGFLGQPQLENALTGM   89 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---~~~----~v~~~~~~~d~~~a~~~a   89 (332)
                      -.+++||+|||+ |.+|+.++..|+..|+  +|.++|+++.+.  ..+....   ..+    .+..   +++..+ ++++
T Consensus        11 ~~~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~--~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~a   81 (335)
T 1z82_A           11 HHMEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIV--DLINVSHTSPYVEESKITVRA---TNDLEE-IKKE   81 (335)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHH--HHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTT
T ss_pred             cccCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHH--HHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCC
Confidence            356789999999 9999999999999988  999999875221  2222111   000    1232   235556 8999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                      |+||++...                ..+.++++.+..  ++.+||.++|.++.
T Consensus        82 DvVil~vk~----------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           82 DILVIAIPV----------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EEEEECSCG----------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             CEEEEECCH----------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            999998521                123344444443  67788888886553

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.83  E-value=2.1e-05  Score=72.23  Aligned_cols=168  Identities=17%  Similarity=0.120  Sum_probs=92.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhcC--CCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENALT--GMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~--~aDiVi~   94 (332)
                      +|||.|+||+|++|++++..|+..|+  +|+++|++..... ..+..   ...+... .-+|   +.++++  ++|+||+
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~---~~~~~~~-D~~~~~~~~~~~~~~~~d~vih   73 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE---GAKFYNG-DLRDKAFLRDVFTQENIEAVMH   73 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT---TSEEEEC-CTTCHHHHHHHHHHSCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC---CcEEEEC-CCCCHHHHHHHHhhcCCCEEEE
Confidence            36899999999999999999999887  9999997651100 11111   1111111 1122   345666  8999999


Q ss_pred             cCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHH
Q 020049           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  172 (332)
Q Consensus        95 ~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r  172 (332)
                      +++.....  ..+..+.+..|+.....+++.+.+.... .+|++|... +...--...+......++...+|.+.....+
T Consensus        74 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~-~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  151 (330)
T 2c20_A           74 FAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAA-TYGEVDVDLITEETMTNPTNTYGETKLAIEK  151 (330)
T ss_dssp             CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGG-GGCSCSSSSBCTTSCCCCSSHHHHHHHHHHH
T ss_pred             CCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCce-eeCCCCCCCCCcCCCCCCCChHHHHHHHHHH
Confidence            98864211  1233456678999999999998876433 455554311 1000000000000011223345555555555


Q ss_pred             HHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          173 ANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      +...+++.+|++..-++ +.++|..
T Consensus       152 ~~~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          152 MLHWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             HHHHHHHTSSCEEEEEECSEEECCC
T ss_pred             HHHHHHHHhCCcEEEEecCcccCCC
Confidence            55555555565443332 4566653

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.83  E-value=0.00023  Score=62.65  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...   ..+..+. .-+|   +.+++      
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999988  8999998752  2222333221   2233221 1123   22223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                       ...|+||+++|......   .+   ....+..|+.    ..+.+.+.+.+....+.||++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             25899999998653211   22   2334556665    444455555443322667776653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.83  E-value=4.6e-05  Score=68.00  Aligned_cols=103  Identities=18%  Similarity=0.189  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC----CCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVi~~~   96 (332)
                      +||.|+||+|++|++++..|+..|+  +|+++|++....    +.     ..+..+..    ..++.++++++|+||+++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGA----AE-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCC----CC-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccc----cC-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999998886  999999876210    00     11222111    123457789999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +..  ........+..|+.....+++.+.+.... .+|++|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            865  22334566778999999999998875433 445443

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.83  E-value=2.2e-05  Score=70.89  Aligned_cols=101  Identities=18%  Similarity=0.153  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||.|+||+|++|+.++..|... +.  +|++++++....  .++...  ...+..  +....++.++++++|+||++++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~--~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~   74 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG--KVSVRQLDYFNQESMVEAFKGMDTVVFIPS   74 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT--TBEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC--CCEEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            68999999999999999998876 66  889998875211  112221  112211  1111235678999999999987


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      ....        ...|+...+.+++.+.+....- +|++
T Consensus        75 ~~~~--------~~~~~~~~~~l~~aa~~~gv~~-iv~~  104 (289)
T 3e48_A           75 IIHP--------SFKRIPEVENLVYAAKQSGVAH-IIFI  104 (289)
T ss_dssp             CCCS--------HHHHHHHHHHHHHHHHHTTCCE-EEEE
T ss_pred             CCcc--------chhhHHHHHHHHHHHHHcCCCE-EEEE
Confidence            5321        1457888889999998776444 4444

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.82  E-value=2e-05  Score=72.66  Aligned_cols=115  Identities=16%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-----CCCeEEE--EeCCCCHHhhcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG--FLGQPQLENALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-----~~~~v~~--~~~~~d~~~a~~~aDiV   92 (332)
                      +|||+|||+ |.+|+.++..|...|.  +|.++|+++.    ..+....     .......  ...+++. +++.++|+|
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~----~~i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY----EAIAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV   73 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH----HHHHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH----HHHHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence            479999999 9999999999999887  8999998752    1122111     0011110  0012354 557899999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |++.-..    .            +.++++.+..+. |+..|+.+.|-++....     +.+.  +|..++++-
T Consensus        74 ilavk~~----~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~-----l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           74 LVGLKTF----A------------NSRYEELIRPLVEEGTQILTLQNGLGNEEA-----LATL--FGAERIIGG  124 (312)
T ss_dssp             EECCCGG----G------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHH-----HHHH--TCGGGEEEE
T ss_pred             EEecCCC----C------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHH-----HHHH--CCCCcEEEE
Confidence            9985211    1            224455566554 67788888898876532     2333  566677654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.82  E-value=1.9e-05  Score=71.68  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEE--eCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~--~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +++|.|+||+|++|++++..|+..| +  +|++++++........+....  ..+...  ....++.++++++|.||+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG--AEVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC--CEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            3689999999999999999998876 6  899999876322223333221  122111  11123567889999999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +.....      ....|+...+.+++.+.+.... .+|..|
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            632110      1245677888888888876543 444443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.82  E-value=0.00013  Score=65.95  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=60.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-CCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVi~~~g~~   99 (332)
                      +||+|||+ |.+|..++..|...|+..+|+++|+++...  ..+.......  ..   +++++++++ +||+||++... 
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~--~~~~~~g~~~--~~---~~~~~~~~~~~aDvVilavp~-   72 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESI--SKAVDLGIID--EG---TTSIAKVEDFSPDFVMLSSPV-   72 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGGGGTCCSEEEECSCH-
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHH--HHHHHCCCcc--cc---cCCHHHHhcCCCCEEEEcCCH-
Confidence            58999999 999999999999887644899999875221  1122221111  11   235567888 99999999521 


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP  139 (332)
                                     ....++++.+..+. |+.+|+.++|.
T Consensus        73 ---------------~~~~~v~~~l~~~l~~~~iv~~~~~~   98 (281)
T 2g5c_A           73 ---------------RTFREIAKKLSYILSEDATVTDQGSV   98 (281)
T ss_dssp             ---------------HHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCcEEEECCCC
Confidence                           12234445555444 57777766654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.82  E-value=8.9e-06  Score=73.42  Aligned_cols=105  Identities=11%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCC-CcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTG-MDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~-aDiVi~~~   96 (332)
                      ++|||.|+|| |++|++++..|+..|+  +|+.++++...     + ... ...+.. +....++.+++++ +|+||+++
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~-~~~-~~~~~~Dl~d~~~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----M-PAG-VQTLIADVTRPDTLASIVHLRPEILVYCV   71 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----C-CTT-CCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----c-ccC-CceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence            4579999996 9999999999999988  89999987521     1 011 011111 1111233456677 99999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +...   .+..+....|+.....+++.+.+.... .+|.+|
T Consensus        72 ~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           72 AASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             HHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             CCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            6431   223344567899999999999865433 444443

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.81  E-value=9e-05  Score=68.46  Aligned_cols=102  Identities=20%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-----CCCeEEE-EeCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG-FLGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-----~~~~v~~-~~~~~d~~~a~~~aDiVi   93 (332)
                      ++||+|||+ |.+|+.++..|...|+  +|.++ .++..  +..+....     ....... ...+++. ++++++|+||
T Consensus        19 ~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~--~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi   91 (318)
T 3hwr_A           19 GMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQH--VQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVL   91 (318)
T ss_dssp             -CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHH--HHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhH--HHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEE
Confidence            479999999 9999999999999988  89999 65421  11121110     0011110 1113454 4579999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  144 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t  144 (332)
                      ++....                .+.++++.+..+. |+.+|+.++|..+...
T Consensus        92 lavk~~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~  127 (318)
T 3hwr_A           92 FCVKST----------------DTQSAALAMKPALAKSALVLSLQNGVENAD  127 (318)
T ss_dssp             ECCCGG----------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHH
T ss_pred             EEcccc----------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHH
Confidence            995211                2356667777665 6778888899998753

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.81  E-value=8.6e-05  Score=65.81  Aligned_cols=115  Identities=16%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|++.  ......++....  .++..+. +-+|   +++++       
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999988  999999876  222333443322  2333222 1223   22333       


Q ss_pred             CCCcEEEEcCCCCC-C-C--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPR-K-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~-~-~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      ...|+||+++|... . +  ..+.   ...+..|+.....+.+.+.++   ...+.|++++.
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence            37899999998653 1 1  1222   334556666655555554432   13456666654

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.80  E-value=9.3e-05  Score=68.00  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=49.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.+||+|||. |.+|..++..|+..|+  +|+++|+++..  ...+....    ...   .+++.+++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            4579999999 9999999999999998  89999987621  11222211    122   346788899999999985

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.79  E-value=1.6e-05  Score=72.45  Aligned_cols=169  Identities=15%  Similarity=0.039  Sum_probs=90.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +++||.|+||+|++|++++..|+..|+  +|+.+|++....    .........+.......-....+.++|+||.+++.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~d~vi~~a~~   79 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPP----MIPPEGTGKFLEKPVLELEERDLSDVRLVYHLASH   79 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCC----SSCCTTSSEEECSCGGGCCHHHHTTEEEEEECCCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCccc----ccchhhhhhhccCCCeeEEeCccccCCEEEECCcc
Confidence            357999999999999999999999987  899999865210    00000001111000001123445699999999876


Q ss_pred             CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHH
Q 020049           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  176 (332)
Q Consensus        99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~  176 (332)
                      ....  .....+... |+.....+++.+.+....-+|.+.|.-+.....  ...+.......+...+|.+.....++...
T Consensus        80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~--~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~  156 (321)
T 3vps_A           80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQAD--TLPTPEDSPLSPRSPYAASKVGLEMVAGA  156 (321)
T ss_dssp             CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCS--SSSBCTTSCCCCCSHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCC--CCCCCCCCCCCCCChhHHHHHHHHHHHHH
Confidence            5311  112233445 999999999999988744433333321100000  00000011122334455555555556566


Q ss_pred             HHHHhCC-CCCCCc-eeEEEec
Q 020049          177 VAEVLGL-DPRDVD-VPVVGGH  196 (332)
Q Consensus       177 la~~l~v-~~~~v~-~~v~G~h  196 (332)
                      +++..++ +..-++ +.++|..
T Consensus       157 ~~~~~~~~~~~ilRp~~v~G~~  178 (321)
T 3vps_A          157 HQRASVAPEVGIVRFFNVYGPG  178 (321)
T ss_dssp             HHHSSSSCEEEEEEECEEECTT
T ss_pred             HHHHcCCCceEEEEeccccCcC
Confidence            6665565 333332 4566644

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.79  E-value=2.6e-05  Score=71.56  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||+|||+ |.+|..++..|+..|+  +|+++|+++.  .+..+.....  .. .   .+++++++++||+||++.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~~~~~g~--~~-~---~~~~~e~~~~aDvvi~~v   72 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQ--ACANLLAEGA--CG-A---AASAREFAGVVDALVILV   72 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC--SE-E---ESSSTTTTTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHH--HHHHHHHcCC--cc-c---cCCHHHHHhcCCEEEEEC
Confidence            3479999999 9999999999999998  9999998752  2222332221  11 1   134578899999999985

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.79  E-value=1.9e-05  Score=71.48  Aligned_cols=99  Identities=14%  Similarity=0.097  Sum_probs=69.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC--CcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|+ .|+  +|+.+|++..      ...    .++.   ...++.+++++  +|+||++++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~------~~~----~D~~---d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK------EFC----GDFS---NPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS------SSC----CCTT---CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc------ccc----ccCC---CHHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999998 777  9999998651      000    1111   01234566776  9999999886


Q ss_pred             CCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ...  ......+....|+.....+++.+.+...  .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1233456678899999999999987643  455554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.79  E-value=4.1e-05  Score=72.02  Aligned_cols=170  Identities=14%  Similarity=0.017  Sum_probs=98.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC---HHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d---~~~a~~~aDiVi   93 (332)
                      ++|||.|+||+|++|++++..|+..| +  +|+++|++..... ..+..   ...+..+... +|   +.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            45789999999999999999999988 7  9999998652100 01110   1234432211 22   446778999999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCC-CCchHHHHHHHHH-HhCC----C-CCCceE
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP-VNSTVPIAAEVFK-KAGT----Y-DPKKLL  163 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP-~~~~t~~~~~~~~-~~~~----~-~~~kvi  163 (332)
                      .+++.....  ..+..+.+..|+.....+++.+.+. ... .+|++|.. +.....  ...+. ....    . ++...+
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~vyg~~~--~~~~~~~E~~~~~~~~~~~~~Y  181 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGCSIAEKT--FDDAKATEETDIVSLHNNDSPY  181 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC----------------CCCCCCCSSCCCSHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHHHcCCCC--CCCcCcccccccccccCCCCch
Confidence            998754211  0133456678999999999998875 333 44444432 111000  00000 0111    1 223445


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      +.+.....++...+++..|++..-++ +.++|...
T Consensus       182 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          182 SMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            55555666666666666776654443 55777543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.78  E-value=0.00012  Score=66.42  Aligned_cols=172  Identities=12%  Similarity=0.090  Sum_probs=87.0

Q ss_pred             hhhHHhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCC
Q 020049            4 NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQP   80 (332)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~   80 (332)
                      +.+|.+.........+.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++..... ..+..+. +-+
T Consensus        17 ~l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   93 (281)
T 4dry_A           17 NLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVG   93 (281)
T ss_dssp             -----------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTT
T ss_pred             eEEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCC
Confidence            456655444444444556899999999999999999999998  899999986  2333333332111 1112211 122


Q ss_pred             CH---Hhhc-------CCCcEEEEcCCCCCCCC----CCh---hhhHhhhHHH----HHHHHHHHHhhC-CCcEEEEecC
Q 020049           81 QL---ENAL-------TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        81 d~---~~a~-------~~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~----~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      |.   ++++       ...|++|.+||.....+    .+.   ...+..|+..    .+.+.+.+.+.. +.+.||+++.
T Consensus        94 d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A           94 DPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence            32   2222       36799999998753221    222   2234555544    555566665554 2567777765


Q ss_pred             CCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       139 P~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                      -...            .+.+..-.++.+......+.+.+|..++  +..|++..
T Consensus       174 ~~~~------------~~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~  213 (281)
T 4dry_A          174 ISAQ------------TPRPNSAPYTATKHAITGLTKSTALDGR--MHDIACGQ  213 (281)
T ss_dssp             GGGT------------CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             HHhC------------CCCCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEEEE
Confidence            3221            1223333344443334456677777764  34454333

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.78  E-value=4.5e-05  Score=69.28  Aligned_cols=64  Identities=14%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||+ |.+|..++..|+..|+  +|+++|+++....  .+.+..    +..   .+++++++++||+||++.
T Consensus         2 ~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            2 TTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----ARQ---ASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHHcCCEEEEEc
Confidence            58999999 9999999999998887  8999999862211  111111    122   346788899999999985

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.78  E-value=0.00011  Score=65.42  Aligned_cols=159  Identities=15%  Similarity=0.167  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc----
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL----   86 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~----   86 (332)
                      ..+.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++++    
T Consensus        11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~   86 (260)
T 2zat_A           11 PLENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAV   86 (260)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHH
Confidence            34456899999999999999999999998  999999876  222333443322  2233221 11232   2223    


Q ss_pred             ---CCCcEEEEcCCCCCCC----CCC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           87 ---TGMDLVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        87 ---~~aDiVi~~~g~~~~~----g~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                         ...|++|+.||.....    ..+   ....+..|+.....+.+.    +.+. ..+.||++|.....          
T Consensus        87 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS~~~~----------  155 (260)
T 2zat_A           87 NLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSSVGAY----------  155 (260)
T ss_dssp             HHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGT----------
T ss_pred             HHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEechhhc----------
Confidence               3799999999864211    112   223445565555444444    4433 34566666542211          


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                        .+.|..-.++.+......+.+.++..++  +..|++.++.
T Consensus       156 --~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  193 (260)
T 2zat_A          156 --HPFPNLGPYNVSKTALLGLTKNLAVELA--PRNIRVNCLA  193 (260)
T ss_dssp             --SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence              1122222334433334456666777664  3445554443

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.78  E-value=0.00012  Score=66.41  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=62.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +|||+|||++|.+|+.++..|...|+  +|+++|+++..  ...+....    +..   + +..+++++||+||++..  
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~---~-~~~~~~~~aDvVi~av~--   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL---T-DGDGWIDEADVVVLALP--   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC---C-CSSGGGGTCSEEEECSC--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc---C-CHHHHhcCCCEEEEcCC--
Confidence            36999999889999999999998887  99999987521  11222211    111   1 33577899999999952  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                                    ...+.++++.+..+. |+.+|+..|+..
T Consensus        77 --------------~~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           77 --------------DNIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             --------------chHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                          112566667777665 567666655543

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=97.77  E-value=2.1e-05  Score=71.80  Aligned_cols=162  Identities=15%  Similarity=0.075  Sum_probs=93.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcC--CCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVi~~~g   97 (332)
                      |||.|+||+|++|++++..|+..|+  +|+++|..... ....+.. .. ..+.. .....++.++++  ++|+||++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-~~-~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-GV-PFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-TC-CEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-Ce-EEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999888  99999974310 0001110 00 11111 100112345666  8999999987


Q ss_pred             CCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC--------CC-chHHHHHHHHHHhCCCCCCceEEee
Q 020049           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP--------VN-STVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus        98 ~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP--------~~-~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      .....  ..+....+..|+.....+++.+.+.... .+|++|..        .+ ...        .....++...+|.+
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~--------E~~~~~~~~~Y~~s  146 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAE--------ETWPPRPKSPYAAS  146 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBC--------TTSCCCCCSHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcC--------CCCCCCCCChHHHH
Confidence            54211  1123445678899999999998876543 44544321        00 000        00011223345555


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .....++...+++..|++..-++ +.++|..
T Consensus       147 K~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          147 KAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            55556666666777776654443 4567753

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.77  E-value=0.00032  Score=63.14  Aligned_cols=158  Identities=18%  Similarity=0.257  Sum_probs=92.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~----   87 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   .+....++....  ..+..+. .-+|.   +++++    
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            446899999999999999999999998  899997765   223334444332  2232221 12332   22333    


Q ss_pred             ---CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 ---GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ---~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                         ..|++|..||......   .+   ....+..|+.....+.+.+.++- +.+.||+++......           ..+
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~-----------~~~  174 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAEL-----------VPW  174 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTC-----------CCS
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhcc-----------CCC
Confidence               7899999998754221   12   23345667777777777766654 356677775532211           112


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+......+.+.++..++  +..|++..+
T Consensus       175 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  208 (271)
T 3v2g_A          175 PGISLYSASKAALAGLTKGLARDLG--PRGITVNIV  208 (271)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            2223344443334456677777774  344544333

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.77  E-value=6.5e-05  Score=68.39  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++..  ...+....    +..   ..+++++++++|+||++.
T Consensus         5 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   69 (299)
T 1vpd_A            5 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEA--IADVIAAG----AET---ASTAKAIAEQCDVIITML   69 (299)
T ss_dssp             -CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             cceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            369999998 9999999999998887  89999987522  12222221    122   346778889999999995

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.77  E-value=0.00025  Score=63.57  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc----
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL----   86 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~----   86 (332)
                      ..+.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. +-+|.   ++++    
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~  103 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVK  103 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHH
Confidence            34557899999999999999999999988  899999876  222333343322  2333221 11232   2222    


Q ss_pred             ---CCCcEEEEcCCCCCCCCC---C---hhhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCCC
Q 020049           87 ---TGMDLVIIPAGVPRKPGM---T---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        87 ---~~aDiVi~~~g~~~~~g~---~---r~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP~  140 (332)
                         .+.|+||.+||.......   +   ....+..|+.....    +.+.+.+. ..+.||++|...
T Consensus       104 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  169 (272)
T 1yb1_A          104 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAA  169 (272)
T ss_dssp             HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             HHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechh
Confidence               378999999987542211   1   12344556655444    44444433 356677776544

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.77  E-value=7.7e-05  Score=66.53  Aligned_cols=153  Identities=16%  Similarity=0.185  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.  .+....++..     .+..+. .-+|   .+++++      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999876  2223333321     122111 1123   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                       ..|++|++||......   .+   ....+..|+...    +.+.+.+.+..+.+.||++|......            +
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~  148 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR------------G  148 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc------------C
Confidence             8999999998753221   12   223344565544    44445555544467777776533211            2


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.++..++  +..|++..+
T Consensus       149 ~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  183 (259)
T 4e6p_A          149 EALVAIYCATKAAVISLTQSAGLDLI--KHRINVNAI  183 (259)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            23223344443334456677777764  334544333

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.77  E-value=6.6e-05  Score=66.06  Aligned_cols=103  Identities=19%  Similarity=0.195  Sum_probs=68.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--H-HHHHHhcCCCCCeEEEEeCCCCHHhhc----CCCcEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVI   93 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~-~~~dl~~~~~~~~v~~~~~~~d~~~a~----~~aDiVi   93 (332)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++...  . ...|+.+.            .++++++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEE
Confidence            4799999999999999999999887  89999987511  0 11122111            1223334    3899999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      ++||.... .......+..|+.....+.+.+.+.   ...+.+|++|.
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            99987542 2234556677877777777766554   22355666643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.76  E-value=8.1e-05  Score=60.36  Aligned_cols=94  Identities=12%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .+||+|||+ |.+|..++..|...|.  +|.++|++..+  ..+.++.     ..+..   ..+++++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            469999999 9999999998887776  69999987622  2233332     22222   3467888999999999865


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCch
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST  143 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~  143 (332)
                      .+.. -... +                 ...|..+++.+++|.++-
T Consensus        90 ~~~~-~~~~-~-----------------~l~~g~~vid~~~p~~~~  116 (144)
T 3oj0_A           90 SKTP-IVEE-R-----------------SLMPGKLFIDLGNPPNIE  116 (144)
T ss_dssp             CSSC-SBCG-G-----------------GCCTTCEEEECCSSCSBC
T ss_pred             CCCc-EeeH-H-----------------HcCCCCEEEEccCCccCC
Confidence            4411 1110 1                 123477888889997654

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.76  E-value=4.6e-05  Score=70.27  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC--CCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~--~aDiV   92 (332)
                      |||.|+||+|++|++++..|+..|+  +|+++|...  .......+.... ...+..+. .-+|   +.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999888  899998643  111112221100 01111111 1123   334454  58999


Q ss_pred             EEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        93 i~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |++||.....  .....+.+..|+.....+++.+.+.... .+|++|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999854211  0123456678999999999998876544 444443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.75  E-value=9.7e-05  Score=69.56  Aligned_cols=95  Identities=13%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC---cEEEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM---DLVII   94 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a---DiVi~   94 (332)
                      ++.|||+|||. |.||..++..|+..|+  +|+++|+++.  .+.++....    +.   ..++++++++++   |+||+
T Consensus        20 m~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~---~~~s~~e~~~~a~~~DvVi~   87 (358)
T 4e21_A           20 FQSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IA---GARSIEEFCAKLVKPRVVWL   87 (358)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CB---CCSSHHHHHHHSCSSCEEEE
T ss_pred             hcCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CE---EeCCHHHHHhcCCCCCEEEE
Confidence            34579999999 9999999999999998  9999998752  223333322    11   134677888888   99999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                      +...+                .+.++++.+.... |+.+||..||-.
T Consensus        88 ~vp~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           88 MVPAA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             eCCHH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            85211                2334455666655 567777666543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.75  E-value=2.9e-05  Score=69.86  Aligned_cols=102  Identities=12%  Similarity=0.155  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||.|+||+|++|++++..|+..  |+  +|+.++++.....  ++....  ..+..  +....++.++++++|+||+++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQG--VEVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhcC--CeEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            47999999999999999999887  66  8999998762211  122111  11111  111123567889999999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +..  .+    +  ..|+.....+++.+.+.... .+|.+|
T Consensus        75 ~~~--~~----~--~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           75 GPH--YD----N--TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCC--SC----H--HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CCC--cC----c--hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            753  11    1  34788888999988876544 344443

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.74  E-value=9.3e-05  Score=65.34  Aligned_cols=154  Identities=15%  Similarity=0.149  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc---CC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL---TG   88 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~---~~   88 (332)
                      .+.++|.|+||+|.+|.+++..|+..|.  +|++.|+++  ......++..     .+.... .-++.   .+.+   ..
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~   84 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSN   84 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCC
Confidence            3456899999999999999999999998  899999876  2222233321     222211 12232   2222   37


Q ss_pred             CcEEEEcCCCCCCC------CCChhhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~------g~~r~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      .|++|++||.....      ..+....+..|+.....+.+    .+.+. ..+.||++|......            +.|
T Consensus        85 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~  151 (249)
T 3f9i_A           85 LDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVGIA------------GNP  151 (249)
T ss_dssp             CSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC--------------CCS
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHhcc------------CCC
Confidence            89999999864321      12233445556555444444    44433 356777776544221            223


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..-.++.+......+.+.++..++  +..|++..+
T Consensus       152 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  184 (249)
T 3f9i_A          152 GQANYCASKAGLIGMTKSLSYEVA--TRGITVNAV  184 (249)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            333344444334456666776664  334544433

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.74  E-value=0.00018  Score=64.80  Aligned_cols=91  Identities=14%  Similarity=0.136  Sum_probs=60.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+|||+ |.+|+.++..|...++  +|+++|+++...  ..+.......  ..   +++++++ +++|+||++..   
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~---   66 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTC--EKAVERQLVD--EA---GQDLSLL-QTAKIIFLCTP---   66 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTTSCS--EE---ESCGGGG-TTCSEEEECSC---
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHhCCCCc--cc---cCCHHHh-CCCCEEEEECC---
Confidence            68999998 9999999999998887  899999875221  1122221111  12   2355677 99999999952   


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                                   ...+.++++.+..+. |+.+|+.+++
T Consensus        67 -------------~~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           67 -------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             -------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             -------------HHHHHHHHHHHHhhCCCCCEEEECCC
Confidence                         123456666776665 5676666544

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.74  E-value=0.00012  Score=67.06  Aligned_cols=76  Identities=18%  Similarity=0.288  Sum_probs=56.2

Q ss_pred             CeEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiG-a~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +||+||| + |.+|..++..|...|+  +|.++|+++.                      .+..+++++||+||++....
T Consensus        22 ~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~----------------------~~~~~~~~~aDvVilavp~~   76 (298)
T 2pv7_A           22 HKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDW----------------------AVAESILANADVVIVSVPIN   76 (298)
T ss_dssp             CCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCG----------------------GGHHHHHTTCSEEEECSCGG
T ss_pred             CEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCcc----------------------cCHHHHhcCCCEEEEeCCHH
Confidence            4899999 7 9999999999998888  8999998652                      03467889999999995211


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                                      .+.++++.+..+. |+++|+.++
T Consensus        77 ----------------~~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           77 ----------------LTLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ----------------GHHHHHHHHGGGCCTTSEEEECC
T ss_pred             ----------------HHHHHHHHHHhhcCCCcEEEECC
Confidence                            1445556666655 566655543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.74  E-value=5.3e-05  Score=67.42  Aligned_cols=116  Identities=15%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~-~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----   87 (332)
                      +.++|.|+||+|++|+.++..|+. .|.  +|+++|++.  ......++....  .++..+. .-+|   ..++++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999 888  899999875  233334444322  1222211 1123   223333    


Q ss_pred             ---CCcEEEEcCCCCCCCCC--C----hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           88 ---GMDLVIIPAGVPRKPGM--T----RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        88 ---~aDiVi~~~g~~~~~g~--~----r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                         ..|+||++||.......  +    ....+..|+.....+.+.+.++. +.+.||++|.
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               79999999987533211  1    23446778888888888887664 3456776654

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.73  E-value=0.00013  Score=68.68  Aligned_cols=173  Identities=17%  Similarity=0.141  Sum_probs=95.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCCc----------HHHHHH-HhcCCC---CCe---EEEEeC-CCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT----------PGVTAD-ISHMDT---GAV---VRGFLG-QPQ   81 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~~----------~~~~~d-l~~~~~---~~~---v~~~~~-~~d   81 (332)
                      |+|.|+||+|++|++++..|+ ..|+  +|+++|++..          .....+ +.....   ...   +..+.. -+|
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            699999999999999999999 8887  9999997641          111111 111110   011   332221 123


Q ss_pred             ---HHhhcC--C-CcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchHH---HH--
Q 020049           82 ---LENALT--G-MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTVP---IA--  147 (332)
Q Consensus        82 ---~~~a~~--~-aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t~---~~--  147 (332)
                         +.++++  + +|+||++|+.....  .....+.+..|+.....+++.+.+..... +|++|. -+.....   ..  
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-iv~~SS~~v~g~~~~~~~~~~  159 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDK-IIFSSSAAIFGNPTMGSVSTN  159 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEEEGGGTBSCCC-----C
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCE-EEEECCHHHhCCCCccccccc
Confidence               334565  6 99999999864311  12334567889999999999988765444 444432 1100000   00  


Q ss_pred             HHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          148 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       148 ~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      ...+.......+...++.+.....++...+++.+|++..-++ +.++|.+
T Consensus       160 ~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          160 AEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             CCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             ccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence            000000000112234555555556666667776776544443 4566654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.73  E-value=0.00037  Score=62.17  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++..  .....++........+..+. .-+|.   ++++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  8999998752  22233343321112333222 12332   2223       


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHH----HHHHHHHHHHhhC--CCcEEEEecCC
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAG----IVRTLCEGIAKCC--PNATVNLISNP  139 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~----~~~~i~~~i~~~~--p~a~viv~tNP  139 (332)
                      ...|++|++||...  .......+..|+.    ..+.+.+.+.+..  +.+.||++|..
T Consensus        85 g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            34699999998653  2233445556655    5566667776543  24677777653

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.73  E-value=0.00013  Score=66.66  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------~   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.   ++++       .
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999998  899999986  233344454332  2333221 12332   2222       3


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      ..|++|.+||......   .+   ....+..|+..    ++.+.+.+.+..+.+.|+++|..
T Consensus       108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  169 (301)
T 3tjr_A          108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASF  169 (301)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCch
Confidence            7899999998753211   12   12334455544    44444555555546777777653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.72  E-value=9.3e-05  Score=68.04  Aligned_cols=66  Identities=11%  Similarity=0.080  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+||+|||+ |.+|+.++..|...|+  +|.++|+++....  .+....    +..   ..+.+++++++|+||++.
T Consensus        29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av   94 (316)
T 2uyy_A           29 TDKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACV   94 (316)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeC
Confidence            3579999999 9999999999998887  8999998762211  122211    122   235678889999999985

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.72  E-value=0.00025  Score=62.92  Aligned_cols=114  Identities=19%  Similarity=0.284  Sum_probs=68.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT-------   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~-------   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. +-+|.   +++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  899999876  223333443322  2222221 12332   23333       


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ..|++|+.||......   .+.   ...+..|+.    ..+.+.+.+.+..+.+.||++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            7999999998653211   121   223445554    34455555555443566777654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.72  E-value=0.00055  Score=60.97  Aligned_cols=155  Identities=19%  Similarity=0.128  Sum_probs=86.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   .++       +
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  104 (262)
T 3rkr_A           29 GQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAH  104 (262)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            46799999999999999999999998  899999876  233344444332  3333322 12232   122       2


Q ss_pred             CCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|.+||.....+    .+   ....+..|+.....+.+.+..+   .+.+.||++|......            +
T Consensus       105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~  172 (262)
T 3rkr_A          105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN------------P  172 (262)
T ss_dssp             SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC------------C
T ss_pred             CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC------------C
Confidence            35899999998732221    12   2234455655544444443322   3456677776543322            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                      .+..-.++.+......+.+.++..+.  +..+++..
T Consensus       173 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v~~  206 (262)
T 3rkr_A          173 VADGAAYTASKWGLNGLMTSAAEELR--QHQVRVSL  206 (262)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            22223344433333445666676653  33454333

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.72  E-value=8.5e-05  Score=59.17  Aligned_cols=71  Identities=21%  Similarity=0.221  Sum_probs=45.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---H-hhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~-~a~~~aDiVi~   94 (332)
                      +.|||+|+|+ |.+|+.++..|...+.  +++++|.++..  ...+.... ...... ...++.   . ..++++|+||+
T Consensus         3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~~-~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            3 HGMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVIN-GDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEEE-SCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEEE-cCCCCHHHHHHcCcccCCEEEE
Confidence            3479999999 9999999999998887  89999987522  12222110 111111 111222   1 22689999999


Q ss_pred             cC
Q 020049           95 PA   96 (332)
Q Consensus        95 ~~   96 (332)
                      +.
T Consensus        76 ~~   77 (140)
T 1lss_A           76 VT   77 (140)
T ss_dssp             CC
T ss_pred             ee
Confidence            95

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.71  E-value=3e-05  Score=68.94  Aligned_cols=97  Identities=12%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +|||+|||+ |.+|..++..|...++  ..+|+++|+++.+  ..++....   .+..   ..+..+++++||+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-
Confidence            479999999 9999999999998875  3489999997622  12221100   1122   346678899999999996 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                       +  +            ..+.++++.+..+. |+.+||..++.+.
T Consensus        72 -~--~------------~~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 -K--P------------DLYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             -C--T------------TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             -C--H------------HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence             1  1            12345556666655 4665554555554

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.71  E-value=5.6e-05  Score=68.11  Aligned_cols=143  Identities=14%  Similarity=0.078  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|++|++++..|+..|.  +|++.|++..  .....++     ...+..+. .-+|   .+++++      
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~~~~~~~~~~~~~   77 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAY-----PDRAEAISLDVTDGERIDVVAADVLARY   77 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHC-----TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc-----cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999998  9999998762  2222211     11222221 1223   222232      


Q ss_pred             -CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                       ..|+||++||.....   ..+   ....+..|+..    .+.+.+.+++.. .+.||++|.....            .+
T Consensus        78 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~------------~~  144 (281)
T 3m1a_A           78 GRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQ------------LS  144 (281)
T ss_dssp             SCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------CC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCcccc------------CC
Confidence             789999999864221   122   22345667666    667777766554 4566666543211            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      .++.-.++.+......+.+.++..++
T Consensus       145 ~~~~~~Y~~sK~a~~~~~~~la~e~~  170 (281)
T 3m1a_A          145 FAGFSAYSATKAALEQLSEGLADEVA  170 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            33334455544444556667777653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.71  E-value=3.3e-05  Score=69.78  Aligned_cols=99  Identities=17%  Similarity=0.234  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-CCCe--EEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAV--VRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~--v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+++....  ++.... ....  ....  ..+ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEec
Confidence            68999999 9999999999999888  9999998762110  121111 0111  1111  124 467899999999953


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCch
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  143 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~  143 (332)
                      ..                .+.++++.+..+. |+.+|+..+|..+..
T Consensus        73 ~~----------------~~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----------------hHHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21                1345556666654 577777788887654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.70  E-value=3.8e-05  Score=71.29  Aligned_cols=93  Identities=19%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHH---HHHhcCCCCCeEEE--EeCCCCHHhhcC--CC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT---ADISHMDTGAVVRG--FLGQPQLENALT--GM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~---~dl~~~~~~~~v~~--~~~~~d~~~a~~--~a   89 (332)
                      .++||+|+||+|++|+.++..|+..|+  +|++++++.  .....   ..+....  ..+..  +....++.++++  ++
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~--v~~~~~Dl~d~~~l~~~~~~~~~   84 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKG--AIIVYGLINEQEAMEKILKEHEI   84 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCC--cEEEEeecCCHHHHHHHHhhCCC
Confidence            346899999999999999999999886  899999875  12222   2233221  12211  111123557788  99


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      |+||++++..             |+....++++.+.+..
T Consensus        85 d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           85 DIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             CEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            9999998642             5666678888888776

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.70  E-value=0.00013  Score=67.96  Aligned_cols=99  Identities=16%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH-HHHHHhcC----CCCCeEEEE-eCCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM----DTGAVVRGF-LGQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~----~~~~~v~~~-~~~~d~~~a~~~aDiV   92 (332)
                      ++|||+|||+ |.+|+.++..|...|+  +|.++|+++... ...+....    ......... ..+++++++++++|+|
T Consensus         3 ~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   79 (359)
T 1bg6_A            3 ESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI   79 (359)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEE
Confidence            3579999999 9999999999998887  899999875211 11111000    000000000 0134677888999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  136 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~  136 (332)
                      |++....                ...++++.+..+. ++.+|+..
T Consensus        80 i~~v~~~----------------~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           80 LIVVPAI----------------HHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EECSCGG----------------GHHHHHHHHGGGCCTTCEEEES
T ss_pred             EEeCCch----------------HHHHHHHHHHHhCCCCCEEEEc
Confidence            9996322                0135556666665 45655555

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.70  E-value=0.00013  Score=67.35  Aligned_cols=96  Identities=24%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc--CCcHHHHHHHhcCCC----C---CeEEEEeCCC--CHHhhcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----G---AVVRGFLGQP--QLENALTGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~--~~~~~~~~dl~~~~~----~---~~v~~~~~~~--d~~~a~~~a   89 (332)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+  ++.  ....+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            68999999 9999999999998887  9999998  542  2222332211    0   12232   23  566788999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      |+||++...+                .+.++++.+....|+.+||.++|..
T Consensus        73 D~vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999995311                1234445555423577777778766

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.69  E-value=6.1e-05  Score=68.37  Aligned_cols=65  Identities=15%  Similarity=0.272  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||+|||+ |.+|+.++..|...|+  +|+++| ++....  .+....    +.   ...+++++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~---~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AV---NVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CB---CCSSHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEEC
Confidence            3479999999 9999999999998887  899999 762111  122211    11   1346678889999999985

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.69  E-value=4.6e-05  Score=69.82  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c---HHHH---HHHhcCCCCCeEEEE--eCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T---PGVT---ADISHMDTGAVVRGF--LGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~---~~~~---~dl~~~~~~~~v~~~--~~~~d~~~a~~~a   89 (332)
                      ++|+|+|+||+|++|++++..|+..|+  +|++++++. .   ....   .++....  ..+...  ....++.++++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~--v~~v~~D~~d~~~l~~a~~~~   78 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMG--VTIIEGEMEEHEKMVSVLKQV   78 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTC
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCC--cEEEEecCCCHHHHHHHHcCC
Confidence            457899999999999999999999887  899998874 1   1111   1222221  122211  1112366889999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      |+||++++...             ....+.+++.+.+..
T Consensus        79 d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           79 DIVISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             SEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             CEEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            99999986431             222345666666654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.69  E-value=0.00024  Score=64.00  Aligned_cols=156  Identities=15%  Similarity=0.112  Sum_probs=88.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++++       
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  899999876  222333443322  2232221 11232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh-----CCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~-----~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|.+||......   .+   ....+..|+.....+.+.+.+.     ...+.||++|......            
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~------------  165 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------  165 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTS------------
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcccccc------------
Confidence            37899999998753221   12   2334566777766666665443     1246677776432211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+..-.++.+......+.+.++..+.  +..|++.++
T Consensus       166 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  201 (277)
T 2rhc_B          166 GVVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAV  201 (277)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTEEEEEEE
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence            122222333333333455666776664  344544433

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.68  E-value=9.3e-05  Score=65.75  Aligned_cols=150  Identities=15%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCC-----CCCeEEEEe-CCCC---HHhhcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-----TGAVVRGFL-GQPQ---LENALT   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~-----~~~~v~~~~-~~~d---~~~a~~   87 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++....     ....+..+. .-+|   +.++++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            346899999999999999999999988  8999998752  22222222111     001222221 1123   223334


Q ss_pred             CC--------cEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh----CCCcEEEEecCCCCchHHHHHH
Q 020049           88 GM--------DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVNSTVPIAAE  149 (332)
Q Consensus        88 ~a--------DiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~----~p~a~viv~tNP~~~~t~~~~~  149 (332)
                      ++        |+||.+||......   .+   ....+..|+.....+.+.+.++    ...+.||++|.....       
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~-------  156 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK-------  156 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH-------
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhc-------
Confidence            33        99999998753211   12   2334556665555555554433    324667777653210       


Q ss_pred             HHHHhCCCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       150 ~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                           .+.|..-.++.+......+...++..+.
T Consensus       157 -----~~~~~~~~Y~~sK~a~~~~~~~la~e~~  184 (264)
T 2pd6_A          157 -----VGNVGQTNYAASKAGVIGLTQTAARELG  184 (264)
T ss_dssp             -----HCCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -----cCCCCChhhHHHHHHHHHHHHHHHHHhh
Confidence                 1233333444444444455666666653

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.68  E-value=0.00015  Score=61.02  Aligned_cols=136  Identities=14%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh--cCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA--LTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a--~~~aDiVi   93 (332)
                      .+||+|+|+ |.+|..++..|... |+  +|+++|.++.+  ...+..... ..+..  ..++   +.++  ++++|+||
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~--~~~~~~~g~-~~~~g--d~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEA--AQQHRSEGR-NVISG--DATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHH--HHHHHHTTC-CEEEC--CTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHH--HHHHHHCCC-CEEEc--CCCCHHHHHhccCCCCCCEEE
Confidence            468999998 99999999999887 87  89999997622  122222221 11211  1122   3344  78999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHH
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~  173 (332)
                      ++.+..           ..|.    .++..+++.+|+..++..++-.+..     +.+.+. |.  ..++.-...-..++
T Consensus       111 ~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~-G~--~~vi~p~~~~a~~l  167 (183)
T 3c85_A          111 LAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQL-----EGLLES-GV--DAAFNIYSEAGSGF  167 (183)
T ss_dssp             ECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHH-TC--SEEEEHHHHHHHHH
T ss_pred             EeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHc-CC--CEEEchHHHHHHHH
Confidence            985311           2233    3444566667787766665432221     223333 33  45555444334455


Q ss_pred             HHHHHHHhCCCCC
Q 020049          174 NTFVAEVLGLDPR  186 (332)
Q Consensus       174 ~~~la~~l~v~~~  186 (332)
                      ...+.+.++.+..
T Consensus       168 ~~~~~~~~~~~~~  180 (183)
T 3c85_A          168 ARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHCCCCC
T ss_pred             HHHHHHhcCCccc
Confidence            5555566665443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.68  E-value=0.00088  Score=58.80  Aligned_cols=152  Identities=14%  Similarity=0.136  Sum_probs=84.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC-CCCeEEEEeC-CCCH---Hh-----
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD-TGAVVRGFLG-QPQL---EN-----   84 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~-~~d~---~~-----   84 (332)
                      ..+.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.... ....+..... .+|.   .+     
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~   88 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV   88 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence            34456899999999999999999999998  899999986  233333343322 1122222111 0221   11     


Q ss_pred             --hcCCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHH
Q 020049           85 --ALTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        85 --a~~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                        .+...|++|+.||.....+    .+   ....+..|+.....+.+.+.++   ...+.||+++......         
T Consensus        89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~---------  159 (247)
T 3i1j_A           89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK---------  159 (247)
T ss_dssp             HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS---------
T ss_pred             HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC---------
Confidence              2237899999998642221    12   2233455655555555554322   2356677766432211         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                         +.+..-.++.+......+.+.++..+.
T Consensus       160 ---~~~~~~~Y~~sK~a~~~~~~~la~e~~  186 (247)
T 3i1j_A          160 ---GRANWGAYGVSKFATEGLMQTLADELE  186 (247)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---CCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence               222223344443334456677777764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.68  E-value=0.0011  Score=60.34  Aligned_cols=156  Identities=19%  Similarity=0.208  Sum_probs=88.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.... ...+..+. .-+|.+          +.+
T Consensus        41 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           41 ARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999987  344445554432 12333322 123321          223


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|..||.....   ..+.   ...+..|+.....+.+.+    .+.. .+.||+++.-....           .+
T Consensus       118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS~~~~~-----------~~  185 (293)
T 3rih_A          118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSSITGPV-----------TG  185 (293)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECCSBTTT-----------BB
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeChhhcc-----------CC
Confidence            4679999999865322   1222   234455665555554444    4443 45566665433211           12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                      .|..-.++.+......+.+.+|..++  +..|++..
T Consensus       186 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~  219 (293)
T 3rih_A          186 YPGWSHYGASKAAQLGFMRTAAIELA--PRGVTVNA  219 (293)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHh--hhCeEEEE
Confidence            23223344443334456677777764  33454333

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.68  E-value=3.5e-05  Score=59.53  Aligned_cols=72  Identities=28%  Similarity=0.376  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe--CCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aDiVi~~   95 (332)
                      +++||+|+|+ |++|+.++..|...| +  +|+++|+++.+.  ..+.+..  .......  ...++.+.++++|+||.+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~--~v~~~~r~~~~~--~~~~~~~--~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNY--SVTVADHDLAAL--AVLNRMG--VATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSE--EEEEEESCHHHH--HHHHTTT--CEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCc--eEEEEeCCHHHH--HHHHhCC--CcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            3468999999 999999999999888 5  899999875221  1222211  1222111  112345678999999999


Q ss_pred             CC
Q 020049           96 AG   97 (332)
Q Consensus        96 ~g   97 (332)
                      ++
T Consensus        77 ~~   78 (118)
T 3ic5_A           77 AP   78 (118)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.68  E-value=0.00046  Score=60.61  Aligned_cols=114  Identities=14%  Similarity=0.142  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++.... ..++..+. .-+|   ++++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999997  899999875  222223331111 12333322 1223   223333       


Q ss_pred             CCcEEEEcCCCCCCCC------CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG------MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g------~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +.|+||+++|......      .+   ....+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            7899999998653211      11   123344555444    44555554443 456666654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.67  E-value=0.00016  Score=65.78  Aligned_cols=132  Identities=12%  Similarity=0.099  Sum_probs=78.5

Q ss_pred             HHhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC---CCCeEEEEeC-CC
Q 020049            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLG-QP   80 (332)
Q Consensus         7 ~~~~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~~-~~   80 (332)
                      ++......++..+.++|.|+||+|.+|++++..|+..|.  +|+++|++.  ......++....   ....+..+.. -+
T Consensus         5 ~~~~~~~~~~~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~   82 (303)
T 1yxm_A            5 AKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIR   82 (303)
T ss_dssp             --CCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTT
T ss_pred             cccCCccCcCCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCC
Confidence            344455555556667899999999999999999999998  899999876  233334443310   1223333221 12


Q ss_pred             C---HHhhcC-------CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCCC
Q 020049           81 Q---LENALT-------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPV  140 (332)
Q Consensus        81 d---~~~a~~-------~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP~  140 (332)
                      |   ..++++       ..|+||++||......   .+.   ...+..|+.....+.+.+.++.   ..+.||+++...
T Consensus        83 ~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           83 NEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence            3   222333       5899999998543211   122   2345667776666666654421   245677776543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.67  E-value=0.00016  Score=63.39  Aligned_cols=145  Identities=19%  Similarity=0.169  Sum_probs=81.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCC---HHhhcC---CCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQ---LENALT---GMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~---~aD   90 (332)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|++...  ....++   . ....... .-+|   ++++++   ..|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~-~~~~~~~-D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKEC---P-GIEPVCV-DLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS---T-TCEEEEC-CTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc---c-CCCcEEe-cCCCHHHHHHHHHHcCCCC
Confidence            456899999999999999999999998  89999987521  111111   1 1121111 1223   333443   479


Q ss_pred             EEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           91 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        91 iVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      +||.++|......   .+   ....+..|+.....+.+.+.+    ....+.||++|.....            .+.|..
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~------------~~~~~~  146 (244)
T 1cyd_A           79 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH------------VTFPNL  146 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT------------SCCTTB
T ss_pred             EEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhc------------CCCCCc
Confidence            9999998653211   11   223445566665555544443    3325667777653211            122322


Q ss_pred             ceEEeehhhHHHHHHHHHHHhC
Q 020049          161 KLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~  182 (332)
                      -.++.+......+.+.+++.++
T Consensus       147 ~~Y~~sK~a~~~~~~~~a~~~~  168 (244)
T 1cyd_A          147 ITYSSTKGAMTMLTKAMAMELG  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG
T ss_pred             chhHHHHHHHHHHHHHHHHHhh
Confidence            3344444444556666776654

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=97.66  E-value=4.1e-05  Score=69.28  Aligned_cols=159  Identities=13%  Similarity=0.055  Sum_probs=89.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC--CcEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLV   92 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiV   92 (332)
                      +.++|||.|+||+|++|++++..|+..|+.  .+...+..     ...|+.+            ..++.+++++  +|+|
T Consensus         3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~~~-----~~~D~~d------------~~~~~~~~~~~~~d~V   65 (319)
T 4b8w_A            3 YFQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSS-----KDADLTD------------TAQTRALFEKVQPTHV   65 (319)
T ss_dssp             CCCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEECCT-----TTCCTTS------------HHHHHHHHHHSCCSEE
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhcCCcccccccccCc-----eecccCC------------HHHHHHHHhhcCCCEE
Confidence            356789999999999999999999988751  01111100     0011110            1134566666  9999


Q ss_pred             EEcCCCCCC---CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CC------chHHHHHHHHHHhCCCCCCc-
Q 020049           93 IIPAGVPRK---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VN------STVPIAAEVFKKAGTYDPKK-  161 (332)
Q Consensus        93 i~~~g~~~~---~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~------~~t~~~~~~~~~~~~~~~~k-  161 (332)
                      |++|+....   ......+.+..|+.....+++.+.+.... .+|.+|.. +.      .+.    |-........+.. 
T Consensus        66 ih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~----E~~~~~~~~~p~~~  140 (319)
T 4b8w_A           66 IHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPID----ETMIHNGPPHNSNF  140 (319)
T ss_dssp             EECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBC----GGGGGBSCCCSSSH
T ss_pred             EECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCcc----ccccccCCCCCCcc
Confidence            999986421   11334567788999999999999887644 34444321 10      000    0000000111112 


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      .+|.+.....++...+++..+++..-++ +.++|...
T Consensus       141 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~  177 (319)
T 4b8w_A          141 GYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHD  177 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             hHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCC
Confidence            2555555566666666777776544443 46777543

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.66  E-value=2.1e-05  Score=69.94  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhc-------CCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~-------~~aDi   91 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++....     .    ..+.. .+...+.++++       ...|+
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~-----~----~~~~~d~~d~~~v~~~~~~~~~~~g~iD~   90 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNA-----D----HSFTIKDSGEEEIKSVIEKINSKSIKVDT   90 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTS-----S----EEEECSCSSHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-----c----cceEEEeCCHHHHHHHHHHHHHHcCCCCE
Confidence            35799999999999999999999998  8999998862110     0    01110 11111222222       35699


Q ss_pred             EEEcCCCCCCC----CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 020049           92 VIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        92 Vi~~~g~~~~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      +|.+||.....    ..+   ....+..|+.....+.+.+.++. +.+.||++|.....            .+.+..-.+
T Consensus        91 li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~~~Y  158 (251)
T 3orf_A           91 FVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL------------NRTSGMIAY  158 (251)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHH
T ss_pred             EEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc------------cCCCCCchh
Confidence            99999864321    111   23345667777777777766554 34677777653321            123333334


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+......+.+.++..++..+..|++..+
T Consensus       159 ~~sKaa~~~~~~~la~e~~~~~~gi~v~~v  188 (251)
T 3orf_A          159 GATKAATHHIIKDLASENGGLPAGSTSLGI  188 (251)
T ss_dssp             HHHHHHHHHHHHHHTSTTSSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence            444333334555555555433556655554

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.66  E-value=4.9e-05  Score=64.80  Aligned_cols=103  Identities=12%  Similarity=0.127  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC---CCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aDiVi~~~   96 (332)
                      +|||.|+||+|++|+.++..|+ .|.  +|+++|++..      ....+       .....+++++++   ..|+||.++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~------~~~~D-------~~~~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG------DVTVD-------ITNIDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS------SEECC-------TTCHHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc------ceeee-------cCCHHHHHHHHHHhCCCCEEEECC
Confidence            4689999999999999999999 887  9999998752      00000       000112223333   489999999


Q ss_pred             CCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecC
Q 020049           97 GVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLISN  138 (332)
Q Consensus        97 g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tN  138 (332)
                      |......   .+.   ...+..|+.....+.+.+.++.. .+.++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            8653221   122   23446788888888887776532 256666654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.66  E-value=0.00033  Score=68.42  Aligned_cols=99  Identities=17%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcC-CCCCeEEEEeCCCCHHhhcC---CCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALT---GMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~---~aDiVi~   94 (332)
                      .+|||+|||. |.||.++|..|+..|+  +|+++|+++..  +.++... .....+..   +.+++++++   ++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g~~g~~i~~---~~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVVG---AQSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEE---CSSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhcccCCCceec---cCCHHHHHhhccCCCEEEE
Confidence            4579999999 9999999999999998  99999998732  2222221 11123332   235566554   6999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                      +...+               +.+.++++.+..+. |+.+||..+|-.
T Consensus        75 ~Vp~~---------------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKAG---------------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCCh---------------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            85321               12344455666555 567777776654

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.66  E-value=4.1e-05  Score=71.19  Aligned_cols=97  Identities=16%  Similarity=0.199  Sum_probs=70.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CC---CHHhhcCC---
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALTG---   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~-----~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~---   88 (332)
                      |||.|+||+|++|++++..|+..|     +  +|+.+|++.....   +.    ...+..+.. -+   ++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~----~~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HE----DNPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CC----SSCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---cc----cCceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998887     6  8999998762111   11    112222211 12   24567788   


Q ss_pred             CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP  129 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p  129 (332)
                      +|+||++|+...   .+..+....|+....++++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34566778899999999999998743

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.65  E-value=0.00018  Score=64.69  Aligned_cols=151  Identities=23%  Similarity=0.267  Sum_probs=85.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------T   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++..   ....... .-+|   .++++       .
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~-Dv~~~~~v~~~~~~~~~~~g   84 (271)
T 3tzq_B           11 NKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR---GAVHHVV-DLTNEVSVRALIDFTIDTFG   84 (271)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT---TCEEEEC-CTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC---CeEEEEC-CCCCHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999998  899999987  3333333411   1111111 1122   22233       3


Q ss_pred             CCcEEEEcCCCCCC-CC----CC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           88 GMDLVIIPAGVPRK-PG----MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        88 ~aDiVi~~~g~~~~-~g----~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ..|++|..||.... ..    .+   ....+..|+.....+.+.+    .+. ..+.||++|......            
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------  151 (271)
T 3tzq_B           85 RLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSATAHA------------  151 (271)
T ss_dssp             CCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTS------------
T ss_pred             CCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCHHHcC------------
Confidence            78999999987522 11    12   2334556766655555555    433 456777776432211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~  191 (332)
                      +.+..-.++.+......+.+.++..++  +..|++.
T Consensus       152 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn  185 (271)
T 3tzq_B          152 AYDMSTAYACTKAAIETLTRYVATQYG--RHGVRCN  185 (271)
T ss_dssp             BCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHh--hcCEEEE
Confidence            222223344443334456677777764  3344433

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.65  E-value=0.00013  Score=67.50  Aligned_cols=67  Identities=16%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCC-----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ++|||+|||+ |.+|..++..|+..| +  +|+++|+++     .......+....  .    .  ++++.+++++||+|
T Consensus        23 M~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g--~----~--~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           23 MMTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG--V----E--PLDDVAGIACADVV   91 (317)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT--C----E--EESSGGGGGGCSEE
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC--C----C--CCCHHHHHhcCCEE
Confidence            3579999999 999999999999998 7  999999974     112333333322  1    1  11346889999999


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      |++.
T Consensus        92 i~av   95 (317)
T 4ezb_A           92 LSLV   95 (317)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9985

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.65  E-value=0.00016  Score=69.14  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=70.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--H---HHHHHhcC-------CCCCeEEEEeC----CCCH
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---VTADISHM-------DTGAVVRGFLG----QPQL   82 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~---~~~dl~~~-------~~~~~v~~~~~----~~d~   82 (332)
                      .+++|.|+||+|++|+.++..|+..|.  +|+++++++..  +   ....+...       .....+..+.+    ..++
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            356899999999999999999977776  99999987631  1   11111110       00122222211    1122


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      . ++.++|+||.+|+..... .........|+.....+++.+.+  ....+|++|
T Consensus       146 ~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~--~~~~~v~~S  196 (427)
T 4f6c_A          146 V-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ--HHARLIYVS  196 (427)
T ss_dssp             C-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH--TTCEEEEEE
T ss_pred             C-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh--cCCcEEEEC
Confidence            2 578999999999865322 33455678899999999999988  334455443

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.65  E-value=0.00025  Score=63.16  Aligned_cols=157  Identities=18%  Similarity=0.163  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|.   ++.+      
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999876  233334444332  2333221 12232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCC--CCCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           87 -TGMDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~--g~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                       ...|++|+.||.....  ..+.   ...+..|+.....+.+.+.++   ...+.||++|......            +.
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~~  154 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN------------TN  154 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC------------CC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC------------CC
Confidence             3789999999875322  2222   233455655555555544322   2356777776533211            22


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+......+.+.++..++  +..|++..+
T Consensus       155 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  188 (256)
T 3gaf_A          155 VRMASYGSSKAAVNHLTRNIAFDVG--PMGIRVNAI  188 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            3223344443334456677777764  344544443

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.65  E-value=0.00059  Score=60.76  Aligned_cols=158  Identities=10%  Similarity=0.061  Sum_probs=91.1

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~--vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      .+++.|+||+|+  +|..++..|+..|.  +|++.|+++ ......++........+..+. .-+|   .++.+      
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            457999999988  99999999999998  899999876 233333343322111222211 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCC-----C--CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 -TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~-----~--g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                       ...|++|..+|....     +  ..+   ....+..|+.....+.+.+..+. +.+.||++|......           
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~-----------  153 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL-----------  153 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS-----------
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc-----------
Confidence             367999999987541     1  112   22345667777777777777665 356777776433211           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       +.|..-.++.+......+.+.++..+.  +..|++..+
T Consensus       154 -~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (266)
T 3oig_A          154 -VMPNYNVMGVAKASLDASVKYLAADLG--KENIRVNSI  189 (266)
T ss_dssp             -CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -cCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             233333344443334456677777764  344544443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.65  E-value=0.00023  Score=64.70  Aligned_cols=66  Identities=14%  Similarity=0.346  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||+|||+ |.+|..++..|...++  +|+++|+++.  ....+.+..    +..   ..+++++++++|+||++.
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~--~~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEA--NVAAVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHH--HHHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            3579999999 9999999999998887  8999998752  222233321    222   346678889999999985

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.65  E-value=9.2e-05  Score=68.07  Aligned_cols=120  Identities=11%  Similarity=0.108  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +|||+|||+ |.+|+.++..|. .|.  +|.++++++...  ..+.....    .........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~--~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQA--AAIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHH--HHHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            589999999 999999999998 776  999999875211  11211110    000010000111 2457899999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-ehhhH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  170 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~ld~  170 (332)
                      .-..                .+.++++.+....++. ||.+.|-++..     +.+.+.  +|..++++- +....
T Consensus        75 vK~~----------------~~~~~l~~l~~~~~~~-ivs~~nGi~~~-----e~l~~~--~~~~~vl~g~~~~~a  126 (307)
T 3ego_A           75 VKQH----------------QLQSVFSSLERIGKTN-ILFLQNGMGHI-----HDLKDW--HVGHSIYVGIVEHGA  126 (307)
T ss_dssp             CCGG----------------GHHHHHHHTTSSCCCE-EEECCSSSHHH-----HHHHTC--CCSCEEEEEEECCEE
T ss_pred             eCHH----------------HHHHHHHHhhcCCCCe-EEEecCCccHH-----HHHHHh--CCCCcEEEEEEeece
Confidence            5211                1334556666555566 77778887654     223333  577788654 55443

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.64  E-value=0.00066  Score=60.03  Aligned_cols=115  Identities=18%  Similarity=0.202  Sum_probs=69.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCCH----Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL----ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~----~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  + |+++|+++......++........+..+.. -+|.    ++++       
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            45899999999999999999999987  5 899998763222333332211223333221 1221    1222       


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC------CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC------PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~------p~a~viv~tN  138 (332)
                      ...|++|++||...  .......+..|+.....+.+.+.++.      +.+.||++|.
T Consensus        83 g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  138 (254)
T 1sby_A           83 KTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             SCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECc
Confidence            37899999998642  23344555667666555555544322      2466777764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.64  E-value=0.00029  Score=61.74  Aligned_cols=100  Identities=17%  Similarity=0.178  Sum_probs=63.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-C---CCHHhhcCCCcEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLV   92 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~a~~~aDiV   92 (332)
                      +++++|.|+||+|++|+.++..|+..| +  +|+++++++..     +.... ...+..+.. -   .++.++++++|+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~-----~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~v   92 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAK-----IHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIV   92 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGG-----SCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhh-----hcccc-cCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence            345689999999999999999999988 6  89999987521     11111 122332211 1   2355778999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      |.+++..      ..+      ...+.+++.+++.... .||++|.
T Consensus        93 v~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           93 YANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EEECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EEcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            9988642      111      2244677777765533 4555543

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.64  E-value=0.00081  Score=60.48  Aligned_cols=157  Identities=16%  Similarity=0.192  Sum_probs=88.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCHHh---------hc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQLEN---------AL   86 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~~~---------a~   86 (332)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|.++ ....+.++....  ..+..+. .-+|.++         .+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAAT  104 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhc
Confidence            3446899999999999999999999998  899999655 334444454432  3333322 1233221         12


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|..||......   .+   ....+..|+.....+.+    .+.+.. .+.||++|.....            .+
T Consensus       105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~------------~~  171 (273)
T 3uf0_A          105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIASMLSF------------QG  171 (273)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT------------SC
T ss_pred             CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchHhc------------CC
Confidence            37899999998754321   12   12334556555544444    444443 5667776543221            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       172 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  206 (273)
T 3uf0_A          172 GRNVAAYAASKHAVVGLTRALASEWA--GRGVGVNAL  206 (273)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            22222344443334456677777764  344544433

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.64  E-value=0.00032  Score=64.67  Aligned_cols=118  Identities=18%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|+..|+  +|++.|++.  ......++........+..+. .-+|   ..+++       
T Consensus         8 ~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            8 GRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            35799999999999999999999998  899999986  222333343222112333322 1223   22233       


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhh-----CCCcEEEEecCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKC-----CPNATVNLISNP  139 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~-----~p~a~viv~tNP  139 (332)
                      ...|++|.+||......   .+   ....+.-|+..    ++.+.+.+.+.     ...+.||++|.-
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~  153 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASM  153 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccc
Confidence            35699999998753211   11   22344555444    44444444443     135667777643

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.64  E-value=8.2e-05  Score=66.21  Aligned_cols=151  Identities=13%  Similarity=0.015  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++.  .....++.     ..+..+. .-+|   .++++       
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (257)
T 3tpc_A            7 SRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQEF   79 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  8999998872  22222221     1122111 1123   22233       


Q ss_pred             CCCcEEEEcCCCCCCCC-------CC---hhhhHhhhHHHHHHHHHHHHhh---------CCCcEEEEecCCCCchHHHH
Q 020049           87 TGMDLVIIPAGVPRKPG-------MT---RDDLFNINAGIVRTLCEGIAKC---------CPNATVNLISNPVNSTVPIA  147 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g-------~~---r~~~~~~n~~~~~~i~~~i~~~---------~p~a~viv~tNP~~~~t~~~  147 (332)
                      ...|++|..||......       .+   ....+..|+.....+.+.+.++         ...+.||++|.....     
T Consensus        80 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~-----  154 (257)
T 3tpc_A           80 GHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF-----  154 (257)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH-----
T ss_pred             CCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----
Confidence            38999999998753221       11   2233455665555555544433         134667777653211     


Q ss_pred             HHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 020049          148 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (332)
Q Consensus       148 ~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~  191 (332)
                             .+.|..-.++.+......+.+.++..++  +..|++.
T Consensus       155 -------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn  189 (257)
T 3tpc_A          155 -------DGQIGQAAYAASKGGVAALTLPAARELA--RFGIRVV  189 (257)
T ss_dssp             -------HCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             -------cCCCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEEE
Confidence                   1233333445444334456667777764  3344433

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.64  E-value=0.00017  Score=64.37  Aligned_cols=156  Identities=13%  Similarity=0.141  Sum_probs=90.7

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCH---HhhcC-------
Q 020049           21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL---ENALT-------   87 (332)
Q Consensus        21 ~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~---~~a~~-------   87 (332)
                      ++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++............ .-+|.   +++++       
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence            579999998  8999999999999998  899999876 22333334321111111111 12232   22232       


Q ss_pred             CCcEEEEcCCCCCC-----C--C-CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           88 GMDLVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        88 ~aDiVi~~~g~~~~-----~--g-~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ..|++|++||....     +  . .+   ....+..|+.....+.+.+.++. +.+.||++|.....            .
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~  154 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE------------R  154 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------S
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc------------c
Confidence            67999999987542     1  1 22   23456678888888888877654 24567777642211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++.++
T Consensus       155 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  190 (265)
T 1qsg_A          155 AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  190 (265)
T ss_dssp             BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            123333445544444556677777764  444544443

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.63  E-value=0.00041  Score=62.45  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcCC------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALTG------   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~~------   88 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++...   ..+..+. .-+|   .+++++.      
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999998  899999876  22233334321   2233221 1123   2233433      


Q ss_pred             -CcEEEEcCCCCCC--C--CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           89 -MDLVIIPAGVPRK--P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        89 -aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                       .|++|.++|....  +  ..+.   ...+..|+..    .+.+.+.+.+......||+++.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence             4999999987532  1  1121   2234455544    5555566655543326666654

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.63  E-value=0.00022  Score=63.93  Aligned_cols=157  Identities=15%  Similarity=0.087  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CC--cHHHHHHHhcCCCCCeEEEEe-CCCC-------HHhhc--
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ-------LENAL--   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d-------~~~a~--   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+ ++  ......++.... ...+..+. .-+|       .++++  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            45799999999999999999999998  9999998 54  222333333210 11222211 1122       22222  


Q ss_pred             -----CCCcEEEEcCCCCCCCC---CC--------------hhhhHhhhHHHHHHHHHHHHhhC--CC------cEEEEe
Q 020049           87 -----TGMDLVIIPAGVPRKPG---MT--------------RDDLFNINAGIVRTLCEGIAKCC--PN------ATVNLI  136 (332)
Q Consensus        87 -----~~aDiVi~~~g~~~~~g---~~--------------r~~~~~~n~~~~~~i~~~i~~~~--p~------a~viv~  136 (332)
                           ...|++|++||......   .+              ....+..|+.....+.+.+.++.  ..      +.||++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 37899999998643211   11              12345667776666666666542  22      667777


Q ss_pred             cCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       137 tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |......            +.|..-.++.+......+.+.++..++  +..|++.++
T Consensus       168 sS~~~~~------------~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~v~~v  210 (276)
T 1mxh_A          168 CDAMTDL------------PLPGFCVYTMAKHALGGLTRAAALELA--PRHIRVNAV  210 (276)
T ss_dssp             CCGGGGS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CchhhcC------------CCCCCeehHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            6533211            223223344443334456666776663  334544333

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.63  E-value=0.00022  Score=63.50  Aligned_cols=146  Identities=14%  Similarity=0.066  Sum_probs=79.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++++      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999875  222333343322  2233221 12232   2223      


Q ss_pred             --CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 --TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                        ...|+||+++|.....   ..+   ....+..|+.....+.+.+    .+.. .+.||++|......           
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~~-----------  156 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------  156 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------------
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccchhcc-----------
Confidence              5789999999864321   112   2334566776666665555    4433 45666666543221           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHh
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVL  181 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l  181 (332)
                       +.+..-.++.+......+.+.+++.+
T Consensus       157 -~~~~~~~Y~~sK~a~~~~~~~la~e~  182 (266)
T 1xq1_A          157 -SASVGSIYSATKGALNQLARNLACEW  182 (266)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHH
Confidence             12222334444434445666666666

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.63  E-value=7.9e-05  Score=67.80  Aligned_cols=96  Identities=17%  Similarity=0.059  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHH---HHhcCCCCCeEEE--EeCCCCHHhhcCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTA---DISHMDTGAVVRG--FLGQPQLENALTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~---dl~~~~~~~~v~~--~~~~~d~~~a~~~aDi   91 (332)
                      ++||.|+||+|++|++++..|+..|+  +|++++++..   .....   .+....  ..+..  +....++.++++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~~--~~~~~~D~~d~~~l~~~~~~~d~   79 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLG--AKLIEASLDDHQRLVDALKQVDV   79 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTT--CEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhCC--eEEEeCCCCCHHHHHHHHhCCCE
Confidence            46899999999999999999999887  8999998741   12222   232221  11111  1111235688999999


Q ss_pred             EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      ||.+++.... +        .|+...+.+++.+.+..
T Consensus        80 vi~~a~~~~~-~--------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           80 VISALAGGVL-S--------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             EEECCCCSSS-S--------TTTTTHHHHHHHHHHSC
T ss_pred             EEECCccccc-h--------hhHHHHHHHHHHHHhcC
Confidence            9999875421 1        13444567777777664

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.63  E-value=0.00025  Score=63.16  Aligned_cols=112  Identities=21%  Similarity=0.263  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..     .+..+. .-+|   .+++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  112222211     111111 1123   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecC
Q 020049           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tN  138 (332)
                       ..|++|++||......   .+   ....+..|+.....+    .+.+.+....+.||+++.
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence             7999999998653211   12   223345565444444    444443332466666654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.63  E-value=0.00079  Score=59.49  Aligned_cols=154  Identities=16%  Similarity=0.183  Sum_probs=87.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++.     ..+..+. .-+|   .++++      
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  899999876  222233331     1222211 1122   22222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|..||......   .+   ....+..|+...    +.+.+.+.+..+.+.||+++.....            .
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~  145 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFF------------A  145 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH------------H
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhc------------c
Confidence             37899999998753221   12   223345565544    4444457666556777777652211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       146 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  181 (247)
T 3rwb_A          146 GTPNMAAYVAAKGGVIGFTRALATELG--KYNITANAV  181 (247)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            233333444444334456677777764  444544333

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.63  E-value=0.00018  Score=64.66  Aligned_cols=119  Identities=17%  Similarity=0.161  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhc-CCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~-~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.. ......+..+. .-+|   .+++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  899999876  2222333411 11112333222 1123   223344     


Q ss_pred             --CCcEEEEcCCCCCCC---CC----Ch---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCC
Q 020049           88 --GMDLVIIPAGVPRKP---GM----TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV  140 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~---g~----~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~  140 (332)
                        +.|++|++||.....   ..    +.   ...+..|+.....+.+.+.++.  ..+.||++|...
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~  150 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIA  150 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccc
Confidence              899999999864321   11    22   2334556554444444443321  126677776543

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.63  E-value=0.00051  Score=61.46  Aligned_cols=158  Identities=14%  Similarity=0.151  Sum_probs=89.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH------hhcCCCc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE------NALTGMD   90 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~------~a~~~aD   90 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++........+..+. .-++.+      +.+...|
T Consensus        10 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A           10 GKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            35799999999999999999999998  899999876  233333443322123333322 122321      2334789


Q ss_pred             EEEEcCCCCCCCC---CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           91 LVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        91 iVi~~~g~~~~~g---~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      ++|.+||......   .+.   ...+..|+..    .+.+.+.+.+. ..+.||+++......            +.+..
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~~~  154 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAIM------------PSQEM  154 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGTS------------CCTTC
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhcc------------CCCcc
Confidence            9999998754322   122   2235566655    44455555433 356677775433211            12222


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      -.++.+......+.+.++..++  +..|++..+.
T Consensus       155 ~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          155 AHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            3344443334456677777765  4456554443

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.63  E-value=0.00037  Score=62.90  Aligned_cols=155  Identities=13%  Similarity=0.084  Sum_probs=88.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hhc-------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NAL-------T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a~-------~   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.+   +++       .
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4699999999999999999999998  899999876  233344454432  2333222 123321   222       3


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh-----CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~-----~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..|++|.+||......   .+   ....+..|+.....+.+.+.+.     ...+.||++|......            +
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~------------~  168 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ------------G  168 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS------------C
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc------------C
Confidence            6799999998753221   12   2234556776666666654331     2346677776433211            2


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.++..++  +..|++..+
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  203 (279)
T 3sju_A          169 VMYAAPYTASKHGVVGFTKSVGFELA--KTGITVNAV  203 (279)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHH--hhCcEEEEE
Confidence            22222344433334456667777764  344544333

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.62  E-value=0.00018  Score=64.90  Aligned_cols=91  Identities=11%  Similarity=0.024  Sum_probs=59.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+|||+ |.+|+.++..|.. |+  +|+++|+++....  .+....    +...  +  +.++++++|+||++...+ 
T Consensus         2 ~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~--~--~~~~~~~~D~vi~~v~~~-   66 (289)
T 2cvz_A            2 EKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA--V--PLERVAEARVIFTCLPTT-   66 (289)
T ss_dssp             CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE--C--CGGGGGGCSEEEECCSSH-
T ss_pred             CeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc--C--HHHHHhCCCEEEEeCCCh-
Confidence            58999999 9999999999988 87  8999999862211  111111    1111  2  357789999999995211 


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                                    ..+.++.+.+.+.. |+.+|+..+|..
T Consensus        67 --------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 --------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             --------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                          11334445555544 566777777754

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.62  E-value=0.00065  Score=59.47  Aligned_cols=157  Identities=16%  Similarity=0.143  Sum_probs=85.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCH---Hhhc---
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL---   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~---   86 (332)
                      ++|.|+||+|.+|..++..|+..|...     +|+++|++.  ......++...  ...+..+.. -+|.   ++++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999999877532     789999875  22233344332  233433221 1232   2222   


Q ss_pred             ----CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHH
Q 020049           87 ----TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        87 ----~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                          ...|+||++||......   .+   ....+..|+.....+.+.+.++   ...+.||++|.....           
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~-----------  149 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAAT-----------  149 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT-----------
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhc-----------
Confidence                37999999998753221   12   2233455655555555444322   234667777653321           


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       .+.+..-.++.+......+.+.++..+.  +..+++.++
T Consensus       150 -~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  186 (244)
T 2bd0_A          150 -KAFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDV  186 (244)
T ss_dssp             -SCCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             -CCCCCCchhHHHHHHHHHHHHHHHHHhh--ccCcEEEEE
Confidence             1223333344443334445556666654  344544433

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.62  E-value=0.00036  Score=57.04  Aligned_cols=102  Identities=11%  Similarity=0.009  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHH-HHHHHhcCCCCCeEEEEeCCCC---HHhh-cCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPG-VTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~-~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiV   92 (332)
                      +..||.|+|+ |.+|+.++..|...|+  +++++|.+. .+. ...+.....  ..+..- ..++   +.++ +++||.|
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~--~~~i~g-d~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN--ADVIPG-DSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT--CEEEES-CTTSHHHHHHHTTTTCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCC--CeEEEc-CCCCHHHHHHcChhhCCEE
Confidence            3468999999 9999999999998887  899999874 211 122222111  122211 1122   3344 8999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEE-ecCCCC
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVN  141 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv-~tNP~~  141 (332)
                      |.+.+.         +  ..|.    .++..+++..|+..++. +.+|..
T Consensus        76 i~~~~~---------d--~~n~----~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           76 LALSDN---------D--ADNA----FVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC---------H--HHHH----HHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEecCC---------h--HHHH----HHHHHHHHHCCCCEEEEEECCHHH
Confidence            998521         1  3343    33444555667665555 456654

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.62  E-value=0.00047  Score=61.21  Aligned_cols=112  Identities=20%  Similarity=0.215  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++     ...+..+. .-+|   .+++++     
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATAREL-----GDAARYQHLDVTIEEDWQRVVAYAREE   76 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-----CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999998752  1122222     12222221 1123   222333     


Q ss_pred             --CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           88 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                        ..|++|..||......   .+   ....+..|+...    +.+.+.+++.. .+.||++|.
T Consensus        77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence              8999999998753211   12   223345555444    45666666543 456777654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.62  E-value=0.00066  Score=61.28  Aligned_cols=155  Identities=14%  Similarity=0.133  Sum_probs=84.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++|.+.   ......++....  ..+..+. .-+|   .+++++      
T Consensus        30 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4699999999999999999999998  999999754   223334444322  2333221 1122   233333      


Q ss_pred             -CCcEEEEcCCCCC---CC--CCCh---hhhHhhhHHHH----HHHHHHHHhhCC--CcEEEEecCCCCchHHHHHHHHH
Q 020049           88 -GMDLVIIPAGVPR---KP--GMTR---DDLFNINAGIV----RTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        88 -~aDiVi~~~g~~~---~~--g~~r---~~~~~~n~~~~----~~i~~~i~~~~p--~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                       ..|++|..||...   .+  ..+.   ...+..|+...    +.+.+.+.+...  .+.||++|......         
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~---------  176 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM---------  176 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc---------
Confidence             7899999998731   11  1122   23344565544    455555554432  56777776543222         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         +.|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       177 ---~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  212 (280)
T 4da9_A          177 ---TSPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVFEV  212 (280)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence               122222344444344456677777774  445554444

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.62  E-value=0.0016  Score=57.84  Aligned_cols=158  Identities=13%  Similarity=0.079  Sum_probs=88.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++++      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999876  222333443321  2333322 12232   2222      


Q ss_pred             --CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                        ...|++|+.||......   .+   ....+..|+.....+.+.+.++   ...+.||++|.....            .
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~  151 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA------------L  151 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT------------S
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc------------c
Confidence              57999999998753211   12   2234455665555555544321   234667777643211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      +.|..-.++.+......+.+.++..++  +..|++.++.
T Consensus       152 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  188 (260)
T 2ae2_A          152 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  188 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            223333344444344456667777664  3445554443

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.62  E-value=0.00012  Score=74.62  Aligned_cols=115  Identities=18%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHH---hcCCCCCeEEE-EeCCCCHHhhcC--CCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADI---SHMDTGAVVRG-FLGQPQLENALT--GMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl---~~~~~~~~v~~-~~~~~d~~~a~~--~aD   90 (332)
                      +.++|.|+||+|++|++++..|+..|+  +|+++|++.  ......++   ..... ..+.. +....++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v-~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHI-PFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCC-CEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCce-EEEEcCCCCHHHHHHHHHhCCCC
Confidence            457899999999999999999999887  999999765  21111222   21111 11211 100112345566  899


Q ss_pred             EEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        91 iVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +||++|+.....  .....+.+..|+.....+++.+.+..... +|++|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~-iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK-FVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEC
Confidence            999999864211  01234567789999999999988775444 44443

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.62  E-value=0.0002  Score=63.87  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.... ..++..+. .-+|.   .+++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999876  222223332210 11222221 12232   2233       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|++|++||.....   ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            3799999999865321   1122   23344555444    44444444433 456676654

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.62  E-value=0.00021  Score=63.33  Aligned_cols=156  Identities=15%  Similarity=0.119  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CC--cHHHHHHHhcCCCCCeEEEEeC-CCCH---HhhcC-----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENALT-----   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~~-----   87 (332)
                      .++|.|+||+|.+|+.++..|+..|.  +|+++|+ ++  ......++....  ..+..+.. -+|.   .++++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999988  8999998 44  222233343321  23332221 1232   22333     


Q ss_pred             --CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           88 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                        ..|+||++||......   .+   ....+..|+.....    +.+.+.+..+.+.||++|.....            .
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~------------~  150 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK------------I  150 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT------------S
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc------------C
Confidence              7899999998753211   12   12334555554444    44444443325667776542211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|+.-.++.+......+...++..+.  +..+++.++
T Consensus       151 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  186 (261)
T 1gee_A          151 PWPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNI  186 (261)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            223333344443333445566666663  334544444

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.61  E-value=0.00033  Score=62.81  Aligned_cols=97  Identities=13%  Similarity=0.041  Sum_probs=60.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++|||.|+|| |++|++++..|+..|+  +|+.++++.....  .+...    .+..+. .-+|++  ++++|+||++++
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCC
Confidence            3579999998 9999999999999888  9999998762221  12221    122221 123443  899999999987


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                      .....           .+..+.+.+.+++.. .-..+|.+|
T Consensus        73 ~~~~~-----------~~~~~~l~~a~~~~~~~~~~~v~~S  102 (286)
T 3ius_A           73 PDSGG-----------DPVLAALGDQIAARAAQFRWVGYLS  102 (286)
T ss_dssp             CBTTB-----------CHHHHHHHHHHHHTGGGCSEEEEEE
T ss_pred             ccccc-----------cHHHHHHHHHHHhhcCCceEEEEee
Confidence            54211           122356666666632 223444443

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.61  E-value=0.00029  Score=68.93  Aligned_cols=103  Identities=7%  Similarity=0.098  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC---CcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVi~~   95 (332)
                      ..+||+|||+ |.+|++++..|+..|+  +|.++|+++.+  +.++........+..   ++++++++++   +|+||++
T Consensus        14 ~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~   85 (480)
T 2zyd_A           14 SKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLM   85 (480)
T ss_dssp             -CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEEC
T ss_pred             CCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEE
Confidence            3468999999 9999999999999988  89999987522  122221100123443   3467777776   9999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchH
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  144 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t  144 (332)
                      ...+    .           .++++++.+..+. |+.+||..+|.....+
T Consensus        86 Vp~~----~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t  120 (480)
T 2zyd_A           86 VKAG----A-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDT  120 (480)
T ss_dssp             SCSS----S-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred             CCCH----H-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHH
Confidence            5321    1           2334455666665 5778888888764443

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.60  E-value=0.00046  Score=61.76  Aligned_cols=157  Identities=16%  Similarity=0.201  Sum_probs=88.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ..++..+. .-+|   .+++       +
T Consensus        20 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           20 GKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999976  233333343211 12232221 1122   2222       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|+.||......   .+.   ...+..|+..    .+.+.+.+.+..+.+.||++|......            +
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~------------~  164 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA------------P  164 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------C
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc------------C
Confidence            37899999998754321   122   2234455544    445555555555567777776533211            2


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.++..++  +..|++..+
T Consensus       165 ~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~vn~v  199 (266)
T 4egf_A          165 LPDHYAYCTSKAGLVMATKVLARELG--PHGIRANSV  199 (266)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            23223344443334456677777764  344544433

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.60  E-value=0.00032  Score=64.60  Aligned_cols=69  Identities=12%  Similarity=0.191  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +|||+|||+ |.+|..++..|+..|+ .+|+++|++........+....    +..   .+++.+++++||+||++..
T Consensus        24 ~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~vp   92 (312)
T 3qsg_A           24 AMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLVT   92 (312)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEecC
Confidence            479999999 9999999999998875 4899999963011122222221    122   3466788999999999853

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.60  E-value=0.00026  Score=62.11  Aligned_cols=153  Identities=19%  Similarity=0.182  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCC---HHhhcC---CCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQ---LENALT---GMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~---~aDi   91 (332)
                      .++|.|+||+|++|..++..|+..|.  +|+++|+++..  ....++.    ....... .-+|   ++++++   ..|+
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~-D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP----GIEPVCV-DLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEEC-CTTCHHHHHHHHTTCCCCCE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC----CCCEEEE-eCCCHHHHHHHHHHcCCCCE
Confidence            35899999999999999999999988  89999987521  1111111    1121111 1223   223343   5799


Q ss_pred             EEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHH----hhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           92 VIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        92 Vi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~----~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      ||.++|......   .+   ....+..|+.....+.+.+.    +....+.||++|......            +.++.-
T Consensus        80 vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------------~~~~~~  147 (244)
T 3d3w_A           80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTNHS  147 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc------------CCCCCc
Confidence            999998653211   11   22345556666444444443    333256677776533211            223333


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .++.+......+.+.+++.++  +..+++.++
T Consensus       148 ~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v  177 (244)
T 3d3w_A          148 VYCSTKGALDMLTKVMALELG--PHKIRVNAV  177 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            445544444556666777664  334544333

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.60  E-value=0.00095  Score=60.58  Aligned_cols=157  Identities=12%  Similarity=0.098  Sum_probs=92.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHH-HhcCCCCCeEEEEe-CCCCH---Hhhc-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTAD-ISHMDTGAVVRGFL-GQPQL---ENAL-----   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~d-l~~~~~~~~v~~~~-~~~d~---~~a~-----   86 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....+ +...  ..++..+. .-+|.   ++++     
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE--GVKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT--TCCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999999862  122222 2322  23333322 12332   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 --TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                        ...|++|..||.....+    .+   ....+..|+.....+.+.+.++- ..+.||+++.-...            .+
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~  189 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAY------------EG  189 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHH------------HC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhc------------CC
Confidence              37899999988643221    12   23456678888888888877664 34567776542210            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.++..++  +..|++..+
T Consensus       190 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  224 (291)
T 3ijr_A          190 NETLIDYSATKGAIVAFTRSLSQSLV--QKGIRVNGV  224 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            23223344444344456677777764  334544333

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.60  E-value=9.1e-05  Score=67.75  Aligned_cols=91  Identities=16%  Similarity=0.168  Sum_probs=59.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HH-HHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~-~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|+||+|++|++++..|+..|+  +|++++++.. .. ...++....  ..+..  +....++.++++++|+||.++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLG--AIIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCC--CEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999999887  8899988762 22 222333221  22221  111123567899999999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      +...             +...+.+++.+.+..
T Consensus        88 ~~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           88 AFPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             CGGG-------------STTHHHHHHHHHHHC
T ss_pred             chhh-------------hHHHHHHHHHHHhcC
Confidence            6431             222355666666665

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.60  E-value=0.00095  Score=58.94  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++....  ..+..+. .-+|.   +++       
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   81 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEA   81 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999876  233333443321  2333221 12232   122       


Q ss_pred             cCCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tN  138 (332)
                      +...|++|..||.....   ..+.   ...+..|+.....+.    +.+.+..  +.||++|.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           82 LGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            23799999999875321   1222   233455655444444    4444333  66777764

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.60  E-value=0.0003  Score=67.00  Aligned_cols=97  Identities=14%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEccCCc-HHHHHH-HhcCC------CCCe--EE--E-E-eCCCCHHh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTAD-ISHMD------TGAV--VR--G-F-LGQPQLEN   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~-~~~~~d-l~~~~------~~~~--v~--~-~-~~~~d~~~   84 (332)
                      +|||+|||+ |.+|..++..|+. .|+  +|.++|.... ...... +....      ....  ..  . . ..++|+++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            479999999 9999999999987 477  9999993321 122222 22111      0001  11  0 0 01357778


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEE
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL  135 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv  135 (332)
                      ++++||+||++....                ...++++.+..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            899999999995321                1245666776665 4665544

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.60  E-value=0.0015  Score=58.85  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=83.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++.   .+....++.... ...+..+. .-+|.   +++       
T Consensus        25 ~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           25 TKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  999999854   233333444321 23333322 11232   222       


Q ss_pred             cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           86 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      +...|++|..||......   .+.   ...+..|+.....+.+.    +.+. ..+.||++|......            
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------  168 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKK-GWGRIINIASAHGLV------------  168 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECCccccc------------
Confidence            237899999999753322   122   23345565554444444    4444 345677765432211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      +.|..-.++.+......+.+.++..++
T Consensus       169 ~~~~~~~Y~asKaa~~~l~~~la~e~~  195 (281)
T 3v2h_A          169 ASPFKSAYVAAKHGIMGLTKTVALEVA  195 (281)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence            222223344443334456677777764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.60  E-value=0.00036  Score=62.08  Aligned_cols=153  Identities=17%  Similarity=0.212  Sum_probs=91.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE----------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|.+          +.+
T Consensus         8 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (255)
T 4eso_A            8 GKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQTL   80 (255)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  9999998762  22222231     1222211 122321          223


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      ...|++|+.||......   .+   ....+..|+.....+.+.+.++- ..+.||++|......            +.|.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~  148 (255)
T 4eso_A           81 GAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG------------GHPG  148 (255)
T ss_dssp             SSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS------------BCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC------------CCCC
Confidence            47899999998764221   12   23346678777777777776553 346777776533221            2233


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.++..++  +..|++..+
T Consensus       149 ~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  180 (255)
T 4eso_A          149 MSVYSASKAALVSFASVLAAELL--PRGIRVNSV  180 (255)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            33344443334456677777764  444544443

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.59  E-value=0.00024  Score=66.45  Aligned_cols=104  Identities=16%  Similarity=0.149  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-----CCHHhhcCCCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVi~   94 (332)
                      +++|.|+||+|++|++++..|+..|+  +|++++++.......++...   ..+..+...     .++.++++++|.||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~---~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhc---CCcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            57899999999999999999998887  89999987632222334322   122222111     125677899999998


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP  139 (332)
                      +++...   .      ..|... +.+++.+.+.. .. .+|.+|..
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCc
Confidence            765321   1      235544 78888887765 33 45555543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.59  E-value=0.0008  Score=55.07  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh-cCCCcEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLV   92 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiV   92 (332)
                      ....++|+|+|+ |.+|+.++..|...|.  +|+++|.++.+.  ..+.... ...+.. ...++   +.++ ++++|+|
T Consensus        16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~-g~~~~~-~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           16 KQKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEF-SGFTVV-GDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTC-CSEEEE-SCTTSHHHHHTTTGGGCSEE
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcC-CCcEEE-ecCCCHHHHHHcCcccCCEE
Confidence            344579999999 9999999999998887  999999876221  1122011 122211 11122   2233 6789999


Q ss_pred             EEcCC
Q 020049           93 IIPAG   97 (332)
Q Consensus        93 i~~~g   97 (332)
                      |++.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99964

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.59  E-value=0.00057  Score=65.82  Aligned_cols=108  Identities=14%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--C--------------CCeEEEEeCCCCHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T--------------GAVVRGFLGQPQLEN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~~~   84 (332)
                      .|.+|||. |+||..+|..|+..|+  +|+.+|+++.  .+..+....  .              ...+..   ++|   
T Consensus        12 ~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~---ttd---   80 (431)
T 3ojo_A           12 SKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKV---STT---   80 (431)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESS---
T ss_pred             CccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEE---eCc---
Confidence            49999999 9999999999999998  9999999862  222233221  0              123443   334   


Q ss_pred             hcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEe-cCCCCchH
Q 020049           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTV  144 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~-tNP~~~~t  144 (332)
                       +++||+||++.+.|.......    .-++..++..++.+.++. |+.+||.. |-|.+..-
T Consensus        81 -~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~  137 (431)
T 3ojo_A           81 -PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMD  137 (431)
T ss_dssp             -CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHH
T ss_pred             -hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHH
Confidence             468999999988876432100    123455566667777766 45554444 56666543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.59  E-value=0.00027  Score=63.10  Aligned_cols=112  Identities=17%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++..     .+..+. .-+|   .+++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999998  8999998752  222222321     122211 1122   223344     


Q ss_pred             --CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           88 --GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                        ..|++|++||.....   ..+   ....+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence              899999999865321   122   223445565555    55555565543 456677654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.58  E-value=7.8e-05  Score=65.76  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|+.++..|+..|.  +|+++|+++  ......++....  .++..+. .-+|.   ++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  899999876  233333444332  2333222 12232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|++||......   .+   ....+..|+.....+.+.    +.+. +.+.||+++.....            .+
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~------------~~  147 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVGS------------AG  147 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH------------HC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhhc------------cC
Confidence            25799999998754321   12   223445565554444444    4433 34667777653211            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.+++.++  +..|++..+
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  182 (247)
T 3lyl_A          148 NPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVV  182 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            34334455544444456677777764  334544433

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.58  E-value=0.00059  Score=60.66  Aligned_cols=116  Identities=10%  Similarity=0.042  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++++      
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            346799999999999999999999998  899999986  233334444322  2333322 12232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tN  138 (332)
                       ...|++|+.||......   .+.   ...+..|+.....+.    +.+.+....+.||+++.
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence             37899999998643211   222   233455655544444    44444455667777754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.58  E-value=0.00069  Score=60.94  Aligned_cols=156  Identities=15%  Similarity=0.143  Sum_probs=87.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC-------------C--cHHHHHHHhcCCCCCeEEEEe-CCCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTGAVVRGFL-GQPQ   81 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~-------------~--~~~~~~dl~~~~~~~~v~~~~-~~~d   81 (332)
                      .+.+++.|+||+|.+|..++..|+..|.  +|+++|++             +  .......+....  ..+..+. .-+|
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   88 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRD   88 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCC
Confidence            3446799999999999999999999998  99999973             2  122233343322  2333221 1223


Q ss_pred             H---Hhh-------cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           82 L---ENA-------LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        82 ~---~~a-------~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      .   ++.       +...|++|+.||......   .+.   ...+..|+.    ..+.+.+.+.+....+.||++|....
T Consensus        89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~  168 (280)
T 3pgx_A           89 DAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAG  168 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhh
Confidence            2   222       237899999998754221   122   223445554    44455555555555677777765332


Q ss_pred             chHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 020049          142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (332)
Q Consensus       142 ~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~  191 (332)
                      .            .+.|..-.++.+......+.+.++..++  +..|++.
T Consensus       169 ~------------~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn  204 (280)
T 3pgx_A          169 L------------KATPGNGHYSASKHGLTALTNTLAIELG--EYGIRVN  204 (280)
T ss_dssp             T------------SCCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEE
T ss_pred             c------------cCCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence            1            1223222344443333456667777764  3345433

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.58  E-value=0.00044  Score=61.97  Aligned_cols=161  Identities=15%  Similarity=0.133  Sum_probs=94.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc--
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL--   86 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~--   86 (332)
                      ...+.+++.|+||+|.+|..++..|+..|.  +|++.|.+.   ......++....  .++..+. .-+|.   ++++  
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~   89 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQ   89 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHH
Confidence            334456899999999999999999999998  899988765   223334444332  2333221 12332   2222  


Q ss_pred             -----CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 -----TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 -----~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                           ...|++|..||......   .+   ....+..|+.....+.+.+.++- +.+.||+++......           
T Consensus        90 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------  158 (270)
T 3is3_A           90 AVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD-----------  158 (270)
T ss_dssp             HHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT-----------
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc-----------
Confidence                 36799999998753221   12   23345677777777777776665 356677776533111           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       159 ~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  195 (270)
T 3is3_A          159 FSVPKHSLYSGSKGAVDSFVRIFSKDCG--DKKITVNAV  195 (270)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            1223333344444334456677777765  444544443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.58  E-value=0.0018  Score=57.57  Aligned_cols=158  Identities=15%  Similarity=0.112  Sum_probs=87.5

Q ss_pred             CCCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCH---Hhhc-----
Q 020049           19 AGFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL---ENAL-----   86 (332)
Q Consensus        19 ~~~kI~IiGa~G-~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~-----   86 (332)
                      +.+++.|+||+| .+|..++..|++.|.  +|+++|++.  ......++.... ..++..+.. -+|.   ++++     
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            345799999977 599999999999998  899999986  233334453332 234443321 2332   2222     


Q ss_pred             --CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 --TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                        ...|++|++||......   .+.   ...+..|+.....+    .+.+.+....+.||+++......           
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-----------  166 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR-----------  166 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC-----------
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC-----------
Confidence              36799999999753321   122   23344555444444    44444433566777765433211           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       +.+..-.++.+......+.+.++..+.  +..|++..+
T Consensus       167 -~~~~~~~Y~~sKaa~~~~~~~la~e~~--~~gi~v~~v  202 (266)
T 3o38_A          167 -AQHSQSHYAAAKAGVMALTRCSAIEAV--EFGVRINAV  202 (266)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCCCchHHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence             223333344443334456667777664  334443333

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.57  E-value=0.00043  Score=61.40  Aligned_cols=144  Identities=6%  Similarity=-0.039  Sum_probs=79.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhc-------CCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL-------TGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aDiV   92 (332)
                      +++.|+||+|.+|..++..|++.|.  +|+++|+++. .....++....  .++..+ ...+.++++       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            3699999999999999999999998  8999998762 11222232211  111111 223443333       378999


Q ss_pred             EEcCCCC-CCCC---CCh---hhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           93 IIPAGVP-RKPG---MTR---DDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        93 i~~~g~~-~~~g---~~r---~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      |++||.. ....   .+.   ...+..|+.....    +.+.+.+.. .+.||++|......            +.|..-
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~~~~~  143 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWKELS  143 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCTTCH
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCccccc------------CCCCch
Confidence            9999875 2211   121   2334456554444    444444433 45677776533221            122222


Q ss_pred             eEEeehhhHHHHHHHHHHHhC
Q 020049          162 LLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~  182 (332)
                      .++.+......+.+.++..++
T Consensus       144 ~Y~~sK~a~~~~~~~la~e~~  164 (254)
T 1zmt_A          144 TYTSARAGACTLANALSKELG  164 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            334333333456667777664

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.57  E-value=0.00097  Score=60.12  Aligned_cols=156  Identities=15%  Similarity=0.134  Sum_probs=86.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC------------------cHHHHHHHhcCCCCCeEEEEe-CCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------------------TPGVTADISHMDTGAVVRGFL-GQP   80 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~------------------~~~~~~dl~~~~~~~~v~~~~-~~~   80 (332)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++|++.                  .......+...  ..++..+. .-+
T Consensus        11 ~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~   86 (286)
T 3uve_A           11 GKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH--NRRIVTAEVDVR   86 (286)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT--TCCEEEEECCTT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc--CCceEEEEcCCC
Confidence            45799999999999999999999998  899999861                  11222223322  22333322 123


Q ss_pred             CH---Hhhc-------CCCcEEEEcCCCCCCCC----CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           81 QL---ENAL-------TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        81 d~---~~a~-------~~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      |.   ++++       ...|++|+.||......    .+.   ...+..|+..    .+.+.+.+.+..+.+.||++|..
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence            32   2222       37899999999754322    122   2234455544    44445555555556777777653


Q ss_pred             CCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       140 ~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ....            +.|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       167 ~~~~------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v  206 (286)
T 3uve_A          167 GGLK------------AYPHTGHYVAAKHGVVGLMRAFGVELG--QHMIRVNSV  206 (286)
T ss_dssp             GGTS------------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hhcc------------CCCCccHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            3221            222222334433333456667777764  344544433

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.57  E-value=1.8e-05  Score=74.40  Aligned_cols=115  Identities=13%  Similarity=-0.043  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCC--CCC-eEEEEeC-CCC---HHhhcCC--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD--TGA-VVRGFLG-QPQ---LENALTG--   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~--~~~-~v~~~~~-~~d---~~~a~~~--   88 (332)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++...   ....++....  ... .+..+.. -+|   +.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999887  99999986521   0001110000  011 3333221 123   3355665  


Q ss_pred             CcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCC----CcEEEEec
Q 020049           89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP----NATVNLIS  137 (332)
Q Consensus        89 aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p----~a~viv~t  137 (332)
                      .|+||.+|+.....  .......+..|+.....+++.+.+...    .+.+|++|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999864311  112344567788888888888877642    34666654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.56  E-value=0.00023  Score=64.30  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|   .++++       
T Consensus        27 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (277)
T 4dqx_A           27 QRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMVEKTTAKW   99 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  9999998762  22222221     1222111 1123   22222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+.++   ...+.||++|.....            .+.
T Consensus       100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------------~~~  167 (277)
T 4dqx_A          100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTAT------------SAI  167 (277)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGT------------SCC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhC------------cCC
Confidence            3789999999865321   122   2233456666555444444332   234677777643221            122


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +..-.++.+......+.+.++..++  +..|++..+
T Consensus       168 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  201 (277)
T 4dqx_A          168 ADRTAYVASKGAISSLTRAMAMDHA--KEGIRVNAV  201 (277)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            3333344443334456677777764  344544444

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.56  E-value=0.0002  Score=64.47  Aligned_cols=155  Identities=8%  Similarity=0.112  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|   .++++       
T Consensus        26 gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           26 GRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            35799999999999999999999998  899999876  233344454332  2233221 1122   22223       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|..||......   .+.   ...+..|+.....+    .+.+.+. ..+.||+++......            +
T Consensus       102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iV~isS~~~~~------------~  168 (271)
T 4ibo_A          102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPR-GYGKIVNIGSLTSEL------------A  168 (271)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------B
T ss_pred             CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccHHhCC------------C
Confidence            27899999998753221   222   23345565554444    4444443 346677765432211            2


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       169 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (271)
T 4ibo_A          169 RATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAI  203 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            23223344443334456677777764  444544444

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.56  E-value=0.0003  Score=68.66  Aligned_cols=99  Identities=9%  Similarity=0.072  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC---CcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVi~~~   96 (332)
                      ++||+|||+ |.+|+.++..|+..|+  +|.++|+++..  +.++........+..   +.++++++++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            468999999 9999999999999888  89999987522  111211100123433   3466777665   99999985


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCC
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~  141 (332)
                      ..+               ..+.++++.+..+. |+.+||..+|...
T Consensus        77 p~~---------------~~v~~vl~~l~~~l~~g~iiId~s~~~~  107 (474)
T 2iz1_A           77 QAG---------------AATDATIKSLLPLLDIGDILIDGGNTHF  107 (474)
T ss_dssp             CTT---------------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             cCc---------------hHHHHHHHHHHhhCCCCCEEEECCCCCH
Confidence            221               12334445666555 5667777777653

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.55  E-value=0.0012  Score=59.56  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.     ..+..+. .-+|.   +++       +.
T Consensus        30 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-----CGAAACRVDVSDEQQIIAMVDACVAAFG  102 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----SSCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CcceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999998  999999876  222333331     1111111 12232   122       23


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      ..|++|.+||.....   ..+   ....+..|+.....+.+.+.++   ...+.||++|......            +.|
T Consensus       103 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~------------~~~  170 (277)
T 3gvc_A          103 GVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV------------AVG  170 (277)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS------------CCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc------------CCC
Confidence            789999999875321   122   2334556766655554444332   3456777776533211            233


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..-.++.+......+.+.+|..++  +..|++..+
T Consensus       171 ~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (277)
T 3gvc_A          171 GTGAYGMSKAGIIQLSRITAAELR--SSGIRSNTL  203 (277)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            333344443334456667777764  344544333

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.55  E-value=0.00047  Score=61.11  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++.  ......++.     ..+..+. .-+|   .+++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999986  233333331     1222211 1123   233343     


Q ss_pred             --CCcEEEEcCCCCCCCC---------CC---hhhhHhhhHHHHHHHHHHHHhhC---------CCcEEEEecC
Q 020049           88 --GMDLVIIPAGVPRKPG---------MT---RDDLFNINAGIVRTLCEGIAKCC---------PNATVNLISN  138 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~g---------~~---r~~~~~~n~~~~~~i~~~i~~~~---------p~a~viv~tN  138 (332)
                        ..|+||+++|......         .+   ....+..|+.....+.+.+.++.         ..+.||+++.
T Consensus        84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS  157 (265)
T 2o23_A           84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTAS  157 (265)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence              8999999998653221         12   22344556655555555554431         3456666654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.55  E-value=0.0013  Score=59.25  Aligned_cols=155  Identities=14%  Similarity=0.170  Sum_probs=86.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++...   ..+..+. .-+|.   ++++       
T Consensus        29 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (276)
T 2b4q_A           29 GRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGELS  103 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  899999876  22233344321   1233221 11232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHH----HHHHHHHHhhCC---CcEEEEecCCCCchHHHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCP---NATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~----~~i~~~i~~~~p---~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                      ...|++|.+||.....   ..+   ....+..|+...    +.+.+.+++...   .+.||++|......          
T Consensus       104 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~----------  173 (276)
T 2b4q_A          104 ARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS----------  173 (276)
T ss_dssp             SCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC----------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC----------
Confidence            3789999999865321   112   223445565544    555555555432   16677776532111          


Q ss_pred             hCCCCCCc-eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          154 AGTYDPKK-LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       154 ~~~~~~~k-viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                        +.|..- .++.+......+.+.++..++  +..|++.++
T Consensus       174 --~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gI~vn~v  210 (276)
T 2b4q_A          174 --AMGEQAYAYGPSKAALHQLSRMLAKELV--GEHINVNVI  210 (276)
T ss_dssp             --CCCCSCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             --CCCCCccccHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence              122222 344444344456667776664  344554444

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.55  E-value=0.00014  Score=58.00  Aligned_cols=100  Identities=9%  Similarity=0.039  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---Hhh-cCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENA-LTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~a-~~~aDiVi~~   95 (332)
                      +++|+|+|+ |.+|+.++..|...|.  +++++|.++.  ....+....  .... ....++.   .++ ++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            357999999 9999999999998887  8999998642  112222211  2221 1112232   222 6789999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      .+.+          ...|..    ++..+++..|+.++...+||..
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            7532          122332    3444555667644444456543

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.54  E-value=0.00061  Score=61.63  Aligned_cols=156  Identities=17%  Similarity=0.166  Sum_probs=88.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|+++|+++  ....+.++....  ..+..+. .-+|.   +++       +.
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999998  999999876  233344454322  2333221 12232   222       23


Q ss_pred             CCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..|++|..||....  +  ..+.   ...+..|+.....+.    +.+++. ..+.||++|......          ..+
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~~~~~----------~~~  173 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQR-GGGAIVVVSSINGTR----------TFT  173 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------BCC
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCceEEEEcChhhcc----------CCC
Confidence            79999999997432  1  2222   233455655444444    444544 356677776533221          001


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  208 (283)
T 3v8b_A          174 TPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAV  208 (283)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEEEEE
Confidence            22222344443334456677777765  455654444

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.54  E-value=0.0017  Score=58.00  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHH-hcCCCCCeEEEEe-CCCCH---Hhhc---
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADI-SHMDTGAVVRGFL-GQPQL---ENAL---   86 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl-~~~~~~~~v~~~~-~~~d~---~~a~---   86 (332)
                      ..+.+++.|+||+|.+|..++..|+..|.  +|+++|++.  ......++ ....  ..+..+. .-+|.   ++++   
T Consensus        18 ~l~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~   93 (267)
T 1vl8_A           18 DLRGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAV   93 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHH
Confidence            33446799999999999999999999998  899999876  22223333 1111  1222221 12232   2222   


Q ss_pred             ----CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           87 ----TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        87 ----~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                          ...|++|..||......   .+.   ...+..|+.....+.+.+.++   ...+.||++|.
T Consensus        94 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  158 (267)
T 1vl8_A           94 KEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  158 (267)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence                37899999998754221   121   233455665555554444322   23456666654

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.54  E-value=0.00033  Score=62.61  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++..  .....++...   ..+..+. .-+|   +.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999998  8999998752  2222333221   1233221 1123   223333     


Q ss_pred             --CCcEEEEcCCCCCCC-----CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           88 --GMDLVIIPAGVPRKP-----GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~-----g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                        ..|+||.++|.....     ..+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence              789999999865321     111   2334556766666666555543   23456777654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00036  Score=68.47  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc-CCCCCeEEEEeCCCCHHhhcCC---CcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENALTG---MDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a~~~---aDiVi~   94 (332)
                      +..||+|||+ |.||++++..|+..|+  +|.++|+++..  +.++.. ......+..   +.++++++++   +|+||+
T Consensus         9 ~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~--~~~l~~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A            9 MSADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSK--VDHFLANEAKGKSIIG---ATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHH--HHHHHHTTTTTSSEEC---CSSHHHHHHTSCSSCEEEE
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHcccccCCCeEE---eCCHHHHHhcCCCCCEEEE
Confidence            4568999999 9999999999999998  89999998632  222322 100122332   4567777766   999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      +...+               ..++++++.+..+. |+.+||..+|-...
T Consensus        81 ~Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~  114 (497)
T 2p4q_A           81 LVKAG---------------APVDALINQIVPLLEKGDIIIDGGNSHFP  114 (497)
T ss_dssp             CCCSS---------------HHHHHHHHHHGGGCCTTCEEEECSCCCHH
T ss_pred             EcCCh---------------HHHHHHHHHHHHhCCCCCEEEECCCCChh
Confidence            95321               12445556666665 46677777765543

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.53  E-value=0.00021  Score=69.82  Aligned_cols=101  Identities=11%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcC---CCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aDiVi~~   95 (332)
                      |||+|||+ |.||+.++..|+..|+  +|.++|+++.+  ....+.........+..   +++++++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEEEe
Confidence            68999999 9999999999999988  89999987521  11111110000112433   346666665   59999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      ...+               ..+.++++.+..+. |+.+||..+|-...
T Consensus        76 Vp~~---------------~~v~~vl~~l~~~l~~g~iIId~sng~~~  108 (478)
T 1pgj_A           76 VQAG---------------AATDSTIEQLKKVFEKGDILVDTGNAHFK  108 (478)
T ss_dssp             CCCS---------------HHHHHHHHHHHHHCCTTCEEEECCCCCHH
T ss_pred             cCCh---------------HHHHHHHHHHHhhCCCCCEEEECCCCChH
Confidence            5321               12334445555554 56677777776543

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.53  E-value=0.00018  Score=62.81  Aligned_cols=111  Identities=18%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------CC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~~   88 (332)
                      ++|.|+||+|.+|+.++..|+..|+  +|+++|+++.  .....++.    ....... .-+|   +++++       ..
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~----~~~~~~~-D~~~~~~~~~~~~~~~~~~~~   78 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE----GALPLPG-DVREEGDWARAVAAMEEAFGE   78 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST----TCEEEEC-CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh----hceEEEe-cCCCHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999998  8999998752  22222221    1111111 1122   22222       37


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tNP  139 (332)
                      .|+||.++|......   .+   ....+..|+....    .+.+.+.+. ..+.||++|..
T Consensus        79 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  138 (234)
T 2ehd_A           79 LSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL  138 (234)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            899999998653211   11   2234455655544    444555433 34667777643

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.53  E-value=0.0017  Score=57.96  Aligned_cols=118  Identities=12%  Similarity=0.077  Sum_probs=71.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---h-------h
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---N-------A   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~-------a   85 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++........+..+. .-+|.+   +       .
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  899999876  233334444311112233221 123321   1       2


Q ss_pred             cCCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                      +...|++|.+||.....   ..+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            24679999999875321   122   2334566776666666655433   23566666654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.53  E-value=0.00019  Score=63.16  Aligned_cols=151  Identities=11%  Similarity=0.038  Sum_probs=83.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  .+....++..     .+..+. .-+|.   ++++       
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  899999986  2223333321     122221 11232   2222       


Q ss_pred             CCCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      ...|++|..||.....   ..+   ....+..|+.....+.+.+...-  ..+.||+++......            +.|
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~------------~~~  143 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV------------GKA  143 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS------------SCS
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC------------CCC
Confidence            3679999999874321   122   23345667766655555554332  234666665433221            112


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCcee
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~  191 (332)
                      ..-.++.+......+.+.++..++  +..|++.
T Consensus       144 ~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~  174 (235)
T 3l6e_A          144 NESLYCASKWGMRGFLESLRAELK--DSPLRLV  174 (235)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTT--TSSEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhh--ccCCEEE
Confidence            112233333333456677777764  4445433

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.53  E-value=8.5e-05  Score=69.59  Aligned_cols=160  Identities=13%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCC---CCCeEEEEeC-CCC---HHhhcCC--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMD---TGAVVRGFLG-QPQ---LENALTG--   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~---~~~~v~~~~~-~~d---~~~a~~~--   88 (332)
                      ++|.|+||+|++|++++..|+..|+  +|+++|++...   ....++....   ....+..+.. -+|   +.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999999887  99999986511   1111111000   0122332221 123   3345555  


Q ss_pred             CcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceE
Q 020049           89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        89 aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      .|+||.+||.....  .......+..|+.....+++.+.+...  ...+|++|.. +..-..  ...+......++...+
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~--~~~~~E~~~~~~~~~Y  180 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQ--EIPQKETTPFYPRSPY  180 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCS--SSSBCTTSCCCCCSHH
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCC--CCCCCccCCCCCCChh
Confidence            59999999864211  112344567788999999999887653  1455555431 100000  0000000112223345


Q ss_pred             EeehhhHHHHHHHHHHHhCCC
Q 020049          164 GVTMLDVVRANTFVAEVLGLD  184 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~  184 (332)
                      |.+.....++...+++.++++
T Consensus       181 ~~sK~~~e~~~~~~~~~~~~~  201 (375)
T 1t2a_A          181 GAAKLYAYWIVVNFREAYNLF  201 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCE
T ss_pred             HHHHHHHHHHHHHHHHHhCCC
Confidence            555555556666666666654

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.52  E-value=0.00048  Score=61.17  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=84.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH----HHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++...    ....++....  .++..+. .-+|.   ++++      
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999888  89999987532    1223343321  2333221 12332   2223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|..+|......   .+   ....+..|+...    +.+.+.+.+....+.||++|......            
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~------------  146 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ------------  146 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS------------
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc------------
Confidence             37899999998753211   12   223345565544    44444444444336677765432211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++.++
T Consensus       147 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v  182 (258)
T 3a28_C          147 GFPILSAYSTTKFAVRGLTQAAAQELA--PKGHTVNAY  182 (258)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHH--hhCeEEEEE
Confidence            222222333333333445666776664  344554444

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.52  E-value=0.00012  Score=66.40  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=50.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-------cHHH-HHHHhcCCCCCeEEE--EeCCCCHHhhcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------TPGV-TADISHMDTGAVVRG--FLGQPQLENALTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-------~~~~-~~dl~~~~~~~~v~~--~~~~~d~~~a~~~a   89 (332)
                      ++||+|+||+|++|++++..|+..|+  +|++++++.       .+.. ..++....  ..+..  .....++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~--v~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLG--VILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCC--CEEEEeCCCCHHHHHHHHhCC
Confidence            46899999999999999999998887  888888875       1111 11232221  12211  11112356788999


Q ss_pred             cEEEEcCCCC
Q 020049           90 DLVIIPAGVP   99 (332)
Q Consensus        90 DiVi~~~g~~   99 (332)
                      |+||++++..
T Consensus        78 d~vi~~a~~~   87 (307)
T 2gas_A           78 DIVICAAGRL   87 (307)
T ss_dssp             SEEEECSSSS
T ss_pred             CEEEECCccc
Confidence            9999998754

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.52  E-value=0.00041  Score=60.45  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCC---HHhhcCCC----cE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---LENALTGM----DL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~~a----Di   91 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++   ......... .-+|   .++.++..    |+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~~~~~~~~~-D~~~~~~v~~~~~~~~~~~d~   75 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCL---SNNVGYRAR-DLASHQEVEQLFEQLDSIPST   75 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTC---SSCCCEEEC-CTTCHHHHHHHHHSCSSCCSE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH---hhccCeEee-cCCCHHHHHHHHHHHhhcCCE
Confidence            3599999999999999999999998  8999998762  2222222   111111111 1122   23334333    89


Q ss_pred             EEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 020049           92 VIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        92 Vi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      +|.++|......   .+   ....+..|+.....+.+.+.++..  ...||+++.....            .+.|..-.+
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~------------~~~~~~~~Y  143 (230)
T 3guy_A           76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ------------QPKAQESTY  143 (230)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT------------SCCTTCHHH
T ss_pred             EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC------------CCCCCCchh
Confidence            999998654221   12   223455676666666665554421  2356666543211            122333334


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+......+.+.++..++  +..|++..+
T Consensus       144 ~asKaa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          144 CAVKWAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            4444344556777887775  445544443

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.52  E-value=0.00013  Score=65.11  Aligned_cols=158  Identities=19%  Similarity=0.175  Sum_probs=89.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----   87 (332)
                      +.++|.|+||+|++|++++..|+..|.  +|+++|. +.  ......++....  .++..+. .-+|   +.++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999998 43  222333443322  2233221 1223   223333    


Q ss_pred             ---CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 ---GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ---~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                         +.|+||.++|......   .+   ....+..|+.....+.+.+.++.. .+.||++|......           .+.
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~-----------~~~  164 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGI  164 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CSC
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhcc-----------CCC
Confidence               8899999998753211   12   234456677777777777665532 35666665432210           112


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +..-.++.+......+.+.+++.++  +..+++.++
T Consensus       165 ~~~~~Y~~sK~a~~~~~~~~~~e~~--~~gi~v~~v  198 (274)
T 1ja9_A          165 PNHALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCI  198 (274)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            2222344443334456666777664  234544444

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.52  E-value=0.00028  Score=63.85  Aligned_cols=156  Identities=18%  Similarity=0.199  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++...  ...+..+. .-+|.   +++       +
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGG--GGEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTT--TCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999886  23334444332  12333321 11221   222       2


Q ss_pred             CCCcEEEEcCCCCCCCC----CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|..||.....+    .+.   ...+..|+.....+.+.    +.+. ..+.||+++......           .
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~-----------~  151 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSFVGHT-----------A  151 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCSBTTT-----------B
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcChhhCc-----------C
Confidence            37899999998643221    222   23345565544444444    4433 356677776543221           1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ++|..-.++.+......+.+.++..++  +..|++..+
T Consensus       152 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  187 (280)
T 3tox_A          152 GFAGVAPYAASKAGLIGLVQALAVELG--ARGIRVNAL  187 (280)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            223223344443334456667777764  344544444

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.51  E-value=0.00061  Score=60.47  Aligned_cols=153  Identities=16%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH-HHHHhcCCCCCeEEEEeCCCC---HHhh-------cCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQ---LENA-------LTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d---~~~a-------~~~   88 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++.... ..++.    . .... ..-+|   .+++       +..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~----~-~~~~-~D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIG----G-AFFQ-VDLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHT----C-EEEE-CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhh----C-CEEE-eeCCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999998  8999998763321 22232    1 1111 11123   2222       237


Q ss_pred             CcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           89 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        89 aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      .|++|++||.....   ..+   ....+..|+.....+.+.+.++   ...+.||++|.-....            +.|.
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~------------~~~~  145 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF------------AEQE  145 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS------------BCTT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccC------------CCCC
Confidence            89999999865321   112   2334556766655555544332   2346677776432211            1222


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .-.++.+......+.+.++..++  +..|++.++.
T Consensus       146 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  178 (256)
T 2d1y_A          146 NAAYNASKGGLVNLTRSLALDLA--PLRIRVNAVA  178 (256)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHh--hcCeEEEEEe
Confidence            22334433334456666776664  3445544443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.51  E-value=0.00029  Score=63.30  Aligned_cols=156  Identities=15%  Similarity=0.207  Sum_probs=86.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------T   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~   87 (332)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++|+++  ......++............ .-+|   .++++       .
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           28 KQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAVL-NVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEEC-CTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEE-eCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999999999998  999999876  23333334332211111111 1123   22222       3


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ..|++|..||.....   ..+   ....+..|+.....+.+.    +.+. ..+.||++|....           . .+.
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~~~  171 (270)
T 3ftp_A          105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITSVVG-----------S-AGN  171 (270)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-HCC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhh-----------C-CCC
Confidence            789999999875322   122   223445566555555444    4333 3566777754210           0 123


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+......+.+.++..++  +..|++..+
T Consensus       172 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (270)
T 3ftp_A          172 PGQVNYAAAKAGVAGMTRALAREIG--SRGITVNCV  205 (270)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence            3333444444344456677777764  334544433

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.51  E-value=0.0016  Score=58.59  Aligned_cols=158  Identities=17%  Similarity=0.120  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|+++  ......++..... ...+..+. .-+|.   ++++      
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A           11 DRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  899999876  3344445554321 12444332 12332   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|++||.....+    .+   ....+..|+.....+.+.+.++   ...+.||++|....            ..
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~------------~~  156 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAA------------SN  156 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHH------------HS
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHH------------cC
Confidence             36799999998632221    12   2234556766555555544333   23567777754210            12


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       157 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  192 (281)
T 3svt_A          157 THRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSI  192 (281)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            233333455554445567777887775  344544443

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.51  E-value=8.7e-05  Score=66.52  Aligned_cols=98  Identities=14%  Similarity=0.156  Sum_probs=60.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ||.|+||+|++|++++..|+..  |+  +|++++++.....  ++....  ..+..  +....++.++++++|+||++++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~~--~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQG--ITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHTT--CEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcCC--CeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5899999999999999999887  66  8999998762211  122111  11111  1111235678899999999987


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      ...          ..|+...+.+++.+.+....- +|++
T Consensus        75 ~~~----------~~~~~~~~~l~~a~~~~~~~~-~v~~  102 (286)
T 2zcu_A           75 SEV----------GQRAPQHRNVINAAKAAGVKF-IAYT  102 (286)
T ss_dssp             -----------------CHHHHHHHHHHHHTCCE-EEEE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHcCCCE-EEEE
Confidence            531          136677788888888765443 4444

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.51  E-value=0.00072  Score=61.60  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=86.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--------------cHHHHHHHhcCCCCCeEEEEe-CCCCH---
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL---   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d~---   82 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|+++|+++              +.....++....  .++..+. .-+|.   
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           29 KVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAM  104 (299)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHH
Confidence            5799999999999999999999998  999999862              112223333322  2333221 12232   


Q ss_pred             Hhh-------cCCCcEEEEcCCCCCCCC----CCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCCCCchH
Q 020049           83 ENA-------LTGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        83 ~~a-------~~~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                      +++       +...|++|..||......    .+.   ...+..|+.....+    .+.+.+....+.||++|...... 
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~-  183 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR-  183 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS-
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-
Confidence            222       237899999998653221    222   23445565544444    44444444567777776533221 


Q ss_pred             HHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          145 PIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       145 ~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                                 +.|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       184 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  219 (299)
T 3t7c_A          184 -----------GAENIGNYIASKHGLHGLMRTMALELG--PRNIRVNIV  219 (299)
T ss_dssp             -----------CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -----------CCCCcchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence                       222222344433333456677777764  344544333

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.51  E-value=0.0018  Score=57.23  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=86.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeC-CCCH---Hhh------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL---ENA------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~-~~d~---~~a------   85 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++..... ......... .+|.   ++.      
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            446899999999999999999999998  899999886  2233333332111 111111100 0221   122      


Q ss_pred             -cCCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHH
Q 020049           86 -LTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        86 -~~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                       +...|++|.+||....  +  ..+.   ...+..|+.....+.+.+    .+. ..+.||+++......          
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~~----------  157 (252)
T 3f1l_A           89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSSSVGRQ----------  157 (252)
T ss_dssp             HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGTS----------
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECChhhcc----------
Confidence             2378999999986321  1  1222   233455655554444444    433 356667765433211          


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                        +.+..-.++.+......+.+.++..++  +. |++..+
T Consensus       158 --~~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v  192 (252)
T 3f1l_A          158 --GRANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCI  192 (252)
T ss_dssp             --CCTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEE
T ss_pred             --CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEE
Confidence              222222344443334456777888775  33 654444

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.50  E-value=0.0028  Score=55.85  Aligned_cols=154  Identities=17%  Similarity=0.173  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++ ..... .+....  .++..+. .-+|.   +++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45799999999999999999999998  899999876 32221 333221  2333221 12332   122       34


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ..|++|+.||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|.....            .+.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------------~~~  148 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYW------------LKI  148 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGG------------SCC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhhc------------cCC
Confidence            7899999998753211   12   22344556655    444445465543 4667776543211            112


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+......+.+.++..++  +..|++.++
T Consensus       149 ~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  182 (249)
T 2ew8_A          149 EAYTHYISTKAANIGFTRALASDLG--KDGITVNAI  182 (249)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHH--hcCcEEEEE
Confidence            2222333333334456666777664  334544433

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.50  E-value=0.00037  Score=62.14  Aligned_cols=156  Identities=17%  Similarity=0.150  Sum_probs=85.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++. +.++  ......++....  ..+..+. .-+|.   ++++      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  88886 6654  233334454332  2333222 12332   2223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                       ...|++|..||......   .+.   ...+..|+.....+.+.+.++   ...+.||++|.....            .+
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~  147 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI------------RY  147 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT------------SB
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC------------CC
Confidence             35699999998643221   122   223455665555554444322   235667766542211            11


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.++..++  +..|++..+
T Consensus       148 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  182 (258)
T 3oid_A          148 LENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAV  182 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            22223344443344556677777764  444544444

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.50  E-value=0.00044  Score=61.49  Aligned_cols=78  Identities=14%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC---CCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeC----CCCHHhhcC---
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLG----QPQLENALT---   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~---~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~----~~d~~~a~~---   87 (332)
                      +.++|.|+||+|.+|+.++..|+..|   .  +|+++|++.. .....++....  ..+..+..    ..+..++++   
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHH
Confidence            34689999999999999999999988   6  9999998862 11223332211  12222211    122334443   


Q ss_pred             ------CCcEEEEcCCCCC
Q 020049           88 ------GMDLVIIPAGVPR  100 (332)
Q Consensus        88 ------~aDiVi~~~g~~~  100 (332)
                            ..|+||.+||...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence                  7999999998754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.50  E-value=0.00014  Score=63.23  Aligned_cols=93  Identities=17%  Similarity=0.156  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      ++||+|||+ |.+|+.++..|...|+  +|+++|+++.  ...++....    +...    ++.++++++|+||++....
T Consensus        28 ~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~g----~~~~----~~~~~~~~~DvVi~av~~~   94 (215)
T 2vns_A           28 APKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPSA----AQVT----FQEEAVSSPEVIFVAVFRE   94 (215)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBTT----SEEE----EHHHHTTSCSEEEECSCGG
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHcC----Ccee----cHHHHHhCCCEEEECCChH
Confidence            479999998 9999999999998887  8999998752  222333321    1221    4578899999999986311


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                          . ..+.+        +    +....++.+++.++|+...
T Consensus        95 ----~-~~~v~--------~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           95 ----H-YSSLC--------S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             ----G-SGGGG--------G----GHHHHTTCEEEECCCCCHH
T ss_pred             ----H-HHHHH--------H----HHHhcCCCEEEEeCCCccc
Confidence                1 11111        1    2222367888888888754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.50  E-value=0.00021  Score=68.60  Aligned_cols=138  Identities=18%  Similarity=0.238  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh-cCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVi~   94 (332)
                      +.++|.|+|. |.+|+.++..|...|+  +++++|.++..  +..+..... .-+.+  ..++   +.++ +++||.||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~-~vi~G--Dat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGM-KVFYG--DATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTC-CCEES--CTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCC-eEEEc--CCCCHHHHHhcCCCccCEEEE
Confidence            3468999999 9999999999999888  89999998622  222222221 11221  1223   2233 689999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHH
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~  173 (332)
                      +.+               +-..-..++..+++.+|+..||.-+ ++...-      .+++ .|.  ..|+--+...+.++
T Consensus        75 ~~~---------------~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~------~L~~-~Ga--d~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           75 AID---------------DPQTNLQLTEMVKEHFPHLQIIARARDVDHYI------RLRQ-AGV--EKPERETFEGALKT  130 (413)
T ss_dssp             CCS---------------SHHHHHHHHHHHHHHCTTCEEEEEESSHHHHH------HHHH-TTC--SSCEETTHHHHHHH
T ss_pred             CCC---------------ChHHHHHHHHHHHHhCCCCeEEEEECCHHHHH------HHHH-CCC--CEEECccHHHHHHH
Confidence            842               1233345666777788987665554 443221      2233 232  34554443344444


Q ss_pred             HHHHHHHhCCCCCCC
Q 020049          174 NTFVAEVLGLDPRDV  188 (332)
Q Consensus       174 ~~~la~~l~v~~~~v  188 (332)
                      -..+-..+|+++..+
T Consensus       131 a~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          131 GRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            444445556555443

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.49  E-value=0.00018  Score=64.89  Aligned_cols=153  Identities=11%  Similarity=0.034  Sum_probs=86.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------CC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~~   88 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|++.|+++  ......++...   ...... .-+|   .++++       ..
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~-Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGDD---ALCVPT-DVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTSC---CEEEEC-CTTSHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---eEEEEe-cCCCHHHHHHHHHHHHHHcCC
Confidence            4688999999999999999999998  899999876  22333333211   111111 1123   22222       38


Q ss_pred             CcEEEEcCCCCCCCC----CCh---hhhHhhhHHH----HHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           89 MDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        89 aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~----~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .|++|.+||.....+    .+.   ...+..|+..    .+.+.+.+.+..+ .+.||+++......            +
T Consensus       103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~------------~  170 (272)
T 4dyv_A          103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS------------P  170 (272)
T ss_dssp             CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS------------C
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC------------C
Confidence            999999999753211    122   2344556555    5555555555442 56777776543221            2


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.++..++  +..|++..+
T Consensus       171 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (272)
T 4dyv_A          171 RPYSAPYTATKHAITGLTKSTSLDGR--VHDIACGQI  205 (272)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCEEEEEE
Confidence            22223344443334456667777764  334543333

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.49  E-value=0.00047  Score=67.39  Aligned_cols=99  Identities=17%  Similarity=0.163  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc-CCCCCeEEEEeCCCCHHhhc---CCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL---TGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~a~---~~aDiVi~~~   96 (332)
                      |||+|||+ |.||+.++..|+..|+  +|.++|+++...  .++.. ......+..   ++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHH--HHHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999999 9999999999999888  899999876221  22222 100112332   34666665   5999999985


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                      ..+               ..+.++++.+..+. |+.+||..+|....
T Consensus        75 p~~---------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~  106 (482)
T 2pgd_A           75 KAG---------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYR  106 (482)
T ss_dssp             CTT---------------HHHHHHHHHHHHHCCTTCEEEECSCCCHH
T ss_pred             CCh---------------HHHHHHHHHHHhhcCCCCEEEECCCCCHH
Confidence            321               12333444555554 56677777776543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.49  E-value=0.0011  Score=59.41  Aligned_cols=116  Identities=14%  Similarity=0.116  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++....  ..+..+. .-+|.   ++++      
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999876  222333343322  2233221 11232   2222      


Q ss_pred             --CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecCC
Q 020049           87 --TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNP  139 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tNP  139 (332)
                        ...|++|..||.....   ..+.   ...+..|+.....+.+    .+++. ..+.||++|..
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~  159 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSI  159 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCG
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCH
Confidence              5789999999875321   1222   2233456554444444    44443 34667777653

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.49  E-value=0.0006  Score=61.15  Aligned_cols=114  Identities=15%  Similarity=0.167  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.   +++       +
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999876  333444454432  2333221 12232   122       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tN  138 (332)
                      ...|++|.+||......   .+.   ...+..|+....    .+.+.+.+. ..+.||++|.
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS  140 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQ-RSGQIINIGS  140 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEEcC
Confidence            37899999998753221   122   233455554444    444555443 3566777654

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.48  E-value=0.0012  Score=58.47  Aligned_cols=156  Identities=14%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEe-CCCCH---Hhh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~-~~~d~---~~a-------   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++...... ..+..+. .-+|.   +++       
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999988  999999986  23333334322101 2222211 12232   122       


Q ss_pred             cCCCcEEEEcCCCCCCCC--CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           86 LTGMDLVIIPAGVPRKPG--MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g--~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      +...|++|.+||......  .+   ....+..|+...    +.+.+.+.+. +.+.||+++......            +
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~  151 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRAAKY------------G  151 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHHhcC------------C
Confidence            236899999998753221  11   123344555444    4444444443 356677776543221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                      .++.-.++.+......+.+.++..++  +..|++..
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~  185 (250)
T 3nyw_A          152 FADGGIYGSTKFALLGLAESLYRELA--PLGIRVTT  185 (250)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEEEE
Confidence            12223344444334456677777764  33444333

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.48  E-value=0.00024  Score=72.10  Aligned_cols=166  Identities=15%  Similarity=0.083  Sum_probs=95.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC----HHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~a~~~aDiV   92 (332)
                      ++++|.|+||+|++|++++..|+.. |+  +|+++|++....  .++..   ...+..+.. -+|    +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4578999999999999999999887 66  899999875211  11111   123332221 122    33467799999


Q ss_pred             EEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCC--------CCCCc
Q 020049           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGT--------YDPKK  161 (332)
Q Consensus        93 i~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~--------~~~~k  161 (332)
                      |++|+.....  .....+.+..|+.....+++.+.+..  ..+|++|.. +.....  ...+ ....        .++..
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS~~vyg~~~--~~~~-~E~~~~~~~~p~~~p~~  461 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCS--DKYF-DEDHSNLIVGPVNKPRW  461 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECCGGGGBTCC--SSSB-CTTTCCEEECCTTCTTH
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEecHHHcCCCC--Cccc-CCCccccccCcccCCCC
Confidence            9998865321  12334566778888999999988765  456665542 100000  0000 0000        01112


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .+|.+....+++...+++..|++..-++ +.++|..
T Consensus       462 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~  497 (660)
T 1z7e_A          462 IYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR  497 (660)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTT
T ss_pred             CcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCC
Confidence            4555555555665666666676654443 4567754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.48  E-value=0.00092  Score=59.62  Aligned_cols=154  Identities=16%  Similarity=0.073  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|.   ++++       
T Consensus        11 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A           11 DKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999976  233344454332  2333221 12332   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC----CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|+.||.....+    .+.   ...+..|+.....+.+.    +.+.  .+.||+++......            
T Consensus        87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------------  152 (264)
T 3ucx_A           87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEES--KGAVVNVNSMVVRH------------  152 (264)
T ss_dssp             SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH--TCEEEEECCGGGGC------------
T ss_pred             CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEECcchhcc------------
Confidence            37899999998642211    222   23344565544444444    4433  36677765432111            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       153 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  188 (264)
T 3ucx_A          153 SQAKYGAYKMAKSALLAMSQTLATELG--EKGIRVNSV  188 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            122222334433333456667777664  444544443

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.48  E-value=0.00035  Score=61.93  Aligned_cols=112  Identities=12%  Similarity=0.124  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|   .++++      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999998762  22223331     1222221 1123   22222      


Q ss_pred             -CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCC
Q 020049           87 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                       ...|++|++||.....   ..+.   ...+..|+.    ..+.+.+.+++..  +.||++|..
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~  139 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASV  139 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcch
Confidence             3469999999875321   1222   233455644    4455555665443  677777653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.47  E-value=0.00027  Score=62.81  Aligned_cols=153  Identities=17%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.     ..+..+. .-+|   .+++++      
T Consensus         9 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (261)
T 3n74_A            9 GKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIG-----DAALAVAADISKEADVDAAVEAALSKF   81 (261)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            35899999999999999999999998  899999886  222223331     1222211 1123   222333      


Q ss_pred             -CCcEEEEcCCCCCCCC----CCh---hhhHhhhHHH----HHHHHHHHHhhC---CCcEEEEecCCCCchHHHHHHHHH
Q 020049           88 -GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCC---PNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~----~~~i~~~i~~~~---p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                       ..|++|.+||....++    .+.   ...+..|+..    .+.+.+.+.+..   ..+.|++++......         
T Consensus        82 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~---------  152 (261)
T 3n74_A           82 GKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR---------  152 (261)
T ss_dssp             SCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS---------
T ss_pred             CCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC---------
Confidence             7799999998754222    122   2233445444    555555555442   245677776543221         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         +.|..-.++.+......+.+.++..+.  +..|++..+
T Consensus       153 ---~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  188 (261)
T 3n74_A          153 ---PRPNLAWYNATKGWVVSVTKALAIELA--PAKIRVVAL  188 (261)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---CCCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence               122222344443334456677777764  344544444

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.47  E-value=0.00011  Score=64.51  Aligned_cols=76  Identities=20%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|.+|..++..|+..|  .  +|+++|++.....  ++.+.. ...+..+. .-+|   ..++++      
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~--~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHH--HHHhcc-CCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            4589999999999999999999988  6  9999998762211  122221 22333322 1223   223333      


Q ss_pred             ---CCcEEEEcCCCCC
Q 020049           88 ---GMDLVIIPAGVPR  100 (332)
Q Consensus        88 ---~aDiVi~~~g~~~  100 (332)
                         ..|+||+++|...
T Consensus        78 g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           78 GSDGLSLLINNAGVLL   93 (250)
T ss_dssp             GGGCCCEEEECCCCCC
T ss_pred             CCCCCcEEEECCcccC
Confidence               8999999998654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.47  E-value=0.00088  Score=60.22  Aligned_cols=154  Identities=15%  Similarity=0.131  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--------------cHHHHHHHhcCCCCCeEEEEe-CCCCH--
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL--   82 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d~--   82 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++              .......+....  .++..+. .-+|.  
T Consensus        10 ~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~   85 (281)
T 3s55_A           10 GKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRAA   85 (281)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHH
Confidence            35799999999999999999999998  899999862              111222233222  2333221 12232  


Q ss_pred             -Hhhc-------CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchH
Q 020049           83 -ENAL-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        83 -~~a~-------~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t  144 (332)
                       ++++       ...|++|++||.....   ..+.   ...+..|+.....+.+.    +.+. ..+.||++|.....  
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~--  162 (281)
T 3s55_A           86 LESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKR-NYGRIVTVSSMLGH--  162 (281)
T ss_dssp             HHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGG--
T ss_pred             HHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhhc--
Confidence             2222       3789999999875321   2222   23445566555555554    4443 35667777653221  


Q ss_pred             HHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          145 PIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       145 ~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                                .+.+..-.++.+......+.+.+|..++  +..|++..
T Consensus       163 ----------~~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~  198 (281)
T 3s55_A          163 ----------SANFAQASYVSSKWGVIGLTKCAAHDLV--GYGITVNA  198 (281)
T ss_dssp             ----------SCCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEE
T ss_pred             ----------CCCCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEEEE
Confidence                      1222222344443334456677777664  34454333

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.47  E-value=0.00048  Score=62.08  Aligned_cols=157  Identities=17%  Similarity=0.135  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---Hhhc-------C
Q 020049           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENAL-------T   87 (332)
Q Consensus        20 ~~kI~IiGa~G~--vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~a~-------~   87 (332)
                      .++|.|+||+|+  +|..++..|+..|.  +|++.|+++......++............ .-+|.   ++++       .
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~-Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNPAAVLPC-DVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCCSEEEEC-CTTCHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCCceEEEe-ecCCHHHHHHHHHHHHHHcC
Confidence            358999999866  99999999999998  89999998733334444332211111111 11232   2222       3


Q ss_pred             CCcEEEEcCCCCCCC---C-----CC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           88 GMDLVIIPAGVPRKP---G-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g-----~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      ..|++|.+||.....   +     .+   ....+..|+.....+.+.+..+-  ..+.||+++.....            
T Consensus       103 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~------------  170 (280)
T 3nrc_A          103 GLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAE------------  170 (280)
T ss_dssp             SCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGT------------
T ss_pred             CCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccc------------
Confidence            569999999875421   1     11   12344556665555555554432  24666766543221            


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       171 ~~~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~v~~v  207 (280)
T 3nrc_A          171 KAMPSYNTMGVAKASLEATVRYTALALG--EDGIKVNAV  207 (280)
T ss_dssp             SCCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             cCCCCchhhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            1223333344443334456667777664  344544444

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.47  E-value=0.00014  Score=64.82  Aligned_cols=92  Identities=15%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |||+|||+ |.+|+.++..|...| +  +|.++|+++..  ...+.... .  +...   .+..+++ ++|+||++..  
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~~--~v~~~~r~~~~--~~~~~~~~-g--~~~~---~~~~~~~-~~D~vi~~v~--   66 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGGY--RIYIANRGAEK--RERLEKEL-G--VETS---ATLPELH-SDDVLILAVK--   66 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSC--EEEEECSSHHH--HHHHHHHT-C--CEEE---SSCCCCC-TTSEEEECSC--
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCC--eEEEECCCHHH--HHHHHHhc-C--CEEe---CCHHHHh-cCCEEEEEeC--
Confidence            68999999 999999999998877 6  89999987522  12222110 1  2222   2345677 9999999952  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                                    ...+.++++.+..  ++.+|+..+|....
T Consensus        67 --------------~~~~~~v~~~l~~--~~~ivv~~~~g~~~   93 (263)
T 1yqg_A           67 --------------PQDMEAACKNIRT--NGALVLSVAAGLSV   93 (263)
T ss_dssp             --------------HHHHHHHHTTCCC--TTCEEEECCTTCCH
T ss_pred             --------------chhHHHHHHHhcc--CCCEEEEecCCCCH
Confidence                          1223444545544  36666666666654

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.47  E-value=0.00067  Score=61.17  Aligned_cols=115  Identities=20%  Similarity=0.153  Sum_probs=73.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------h
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---EN-------A   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+..   .....++....  .++..+. .-+|.   .+       .
T Consensus        29 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           29 GKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKI  104 (283)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999998  8999998762   22233343322  2232221 11232   12       2


Q ss_pred             cCCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      +...|++|++||......   .+   ....+..|+.....+.+.+.++- ..+.||++|.
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            347899999998753211   12   23446678887777777777663 3466777654

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.47  E-value=0.00095  Score=59.55  Aligned_cols=116  Identities=21%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~------   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++........+..+. .-+|.   +++++      
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999998  899999876  222233333211012233221 12332   22232      


Q ss_pred             -CCcEEEEcCCCCCCCC----CC---hhhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecC
Q 020049           88 -GMDLVIIPAGVPRKPG----MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                       ..|++|+.||.....+    .+   ....+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence             6899999998753311    12   1233445553    3445666665543 456666654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.47  E-value=0.0012  Score=59.50  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .+++.|+||+|.+|..++..|++.|.  +|++.|+++  .+....++.....  ++..+. .-+|   .+++++      
T Consensus        32 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           32 GKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGG--KALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999998  899999987  3344444543321  222111 1223   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           88 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                       ..|++|..||......   .+.   ...+..|+..    .+.+.+.+.+....+.||+++.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence             7899999998754221   122   2233455544    4444555555444466777654

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.47  E-value=0.00033  Score=62.75  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++.   .+.....+....  .++..+. .-+|.   .+++      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  899999865   122233333322  2333221 11232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|.+||......   .+   ....+..|+...    +.+.+.+.+. +.+.||+++....           . .
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~  171 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKS-RFGSVVNVASIIG-----------E-R  171 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-H
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhc-CCCEEEEEechhh-----------c-C
Confidence             37899999998754321   12   223344555444    4444444444 3456666654210           1 1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+..-.++.+......+.+.++..+.  +..|++..+
T Consensus       172 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  207 (271)
T 4iin_A          172 GNMGQTNYSASKGGMIAMSKSFAYEGA--LRNIRFNSV  207 (271)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCCchHhHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence            233334455544344456666776654  334544333

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.46  E-value=0.00071  Score=59.83  Aligned_cols=157  Identities=14%  Similarity=0.118  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc----
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL----   86 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~----   86 (332)
                      .+.++|.|+||+|.+|..++..|+..|.  +|++.| .+.  ......++....  .++..+. .-+|   .++++    
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   86 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALG--FDFYASEGNVGDWDSTKQAFDKVK   86 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeeEEEecCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999988  888888 433  233334444332  1222111 1123   22223    


Q ss_pred             ---CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHH
Q 020049           87 ---TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        87 ---~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                         ...|++|..||.....   ..+.   ...+..|+..    .+.+.+.+.+.. .+.||++|......          
T Consensus        87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------  155 (256)
T 3ezl_A           87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK----------  155 (256)
T ss_dssp             HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGG----------
T ss_pred             HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcc----------
Confidence               3789999999875422   1222   2344556555    444555555443 46677776544222          


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                        +.+..-.++.+......+.+.++..+.  +..|++..+
T Consensus       156 --~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  191 (256)
T 3ezl_A          156 --GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNTV  191 (256)
T ss_dssp             --SCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             --CCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence              223333444444334456667777664  334544433

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.45  E-value=0.00022  Score=64.08  Aligned_cols=116  Identities=13%  Similarity=0.191  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|++.  .......+....  ..+..+. .-+|   ++++++     
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  108 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKD  108 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999887  899999876  222222222211  2222221 1123   223333     


Q ss_pred             --CCcEEEEcCCCCCC--C---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           88 --GMDLVIIPAGVPRK--P---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        88 --~aDiVi~~~g~~~~--~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                        ..|+||+++|....  +   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus       109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  173 (279)
T 3ctm_A          109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSI  173 (279)
T ss_dssp             HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCC
T ss_pred             hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECch
Confidence              48999999986532  1   111   12234556655    567777776654 4556666543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.45  E-value=0.00041  Score=63.11  Aligned_cols=155  Identities=13%  Similarity=0.125  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~--vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|+  +|..++..|+..|.  +|++.|+++ ......++....  ..+..+. .-+|.   ++++      
T Consensus        31 gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           31 GKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL--GAFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHHh
Confidence            457999999878  99999999999998  899999875 222222222111  1122211 11232   2222      


Q ss_pred             -CCCcEEEEcCCCCCC-----C--CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 -TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~-----~--g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                       ...|++|..||....     +  ..+   ....+..|+.....+.+.+.++- ..+.||++|......           
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~-----------  175 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK-----------  175 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS-----------
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc-----------
Confidence             378999999997531     1  122   23345667777777777766554 356777776433211           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                       +.+..-.++.+......+.+.+|..++  +..|++..
T Consensus       176 -~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~  210 (293)
T 3grk_A          176 -VMPNYNVMGVAKAALEASVKYLAVDLG--PQNIRVNA  210 (293)
T ss_dssp             -BCTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEEEE
Confidence             223333445444344556677777764  33454333

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.45  E-value=0.00039  Score=55.82  Aligned_cols=70  Identities=11%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---Hh-hcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~-a~~~aDiVi~~   95 (332)
                      +++|+|+|+ |.+|+.++..|...|+  +++++|.++..  ...+.+..  ..+... ..++.   .+ .++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~--~~~~~g-d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEG--FDAVIA-DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC--CcEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence            458999999 9999999999999888  99999997622  22232222  122211 12332   11 14689999998


Q ss_pred             CC
Q 020049           96 AG   97 (332)
Q Consensus        96 ~g   97 (332)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            53

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.45  E-value=0.00087  Score=60.18  Aligned_cols=156  Identities=19%  Similarity=0.199  Sum_probs=88.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC-------------C--cHHHHHHHhcCCCCCeEEEEe-CCCCHH
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-------------N--TPGVTADISHMDTGAVVRGFL-GQPQLE   83 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~-------------~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~   83 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++             .  .......+....  ..+..+. .-+|.+
T Consensus        11 ~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   86 (277)
T 3tsc_A           11 GRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFD   86 (277)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHH
Confidence            35799999999999999999999998  99999983             1  122223333322  2333221 223321


Q ss_pred             ---hh-------cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCch
Q 020049           84 ---NA-------LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNST  143 (332)
Q Consensus        84 ---~a-------~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~  143 (332)
                         +.       +...|++|+.||......   .+.   ...+..|+.    ..+.+.+.+.+..+.+.||++|......
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  166 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK  166 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence               22       246899999998754321   222   223445544    4555555566665567777776533211


Q ss_pred             HHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          144 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       144 t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                                  +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       167 ------------~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  202 (277)
T 3tsc_A          167 ------------MQPFMIHYTASKHAVTGLARAFAAELG--KHSIRVNSV  202 (277)
T ss_dssp             ------------CCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ------------CCCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence                        222222344443334456677777774  444544433

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.44  E-value=0.00096  Score=59.84  Aligned_cols=117  Identities=19%  Similarity=0.225  Sum_probs=69.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--------------cHHHHHHHhcCCCCCeEEEEe-CCCCH-
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL-   82 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d~-   82 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.              ......++....  .++..+. .-+|. 
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            346899999999999999999999998  899999862              111222232221  2333222 12232 


Q ss_pred             --Hhhc-------CCCcEEEEcCCCCCCCC--CChhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCC
Q 020049           83 --ENAL-------TGMDLVIIPAGVPRKPG--MTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        83 --~~a~-------~~aDiVi~~~g~~~~~g--~~r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP  139 (332)
                        ++++       ...|++|++||......  ......+..|+...    +.+.+.+.+..+.+.||++|.-
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence              2233       37899999998753222  11233445565444    4444555555556777777653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.44  E-value=0.00043  Score=55.81  Aligned_cols=97  Identities=9%  Similarity=0.067  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---Hh-hcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~-a~~~aDiVi~~   95 (332)
                      ..+|+|+|+ |.+|+.++..|...|+  +++++|.++..  +..+.+..  ..+. ....++.   ++ .+.+||+||++
T Consensus         7 ~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g--~~~i-~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERG--VRAV-LGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTT--CEEE-ESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcC--CCEE-ECCCCCHHHHHhcCcccCCEEEEE
Confidence            358999999 9999999999999888  99999998622  22233222  1221 1112231   11 25789999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NP  139 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP  139 (332)
                      .+..           ..|..    ++..+++..|+..+|.-. +|
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~  108 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAHYD  108 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSH
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCH
Confidence            5311           23333    344566677887666554 44

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.44  E-value=0.00081  Score=59.74  Aligned_cols=116  Identities=18%  Similarity=0.265  Sum_probs=68.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++........+..+. .-+|   .+++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  899999876  222233333210011233221 1123   223343      


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +.|++|+.+|......   .+   ....+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence            5999999998653211   12   223445566555    55555554443 456666654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.43  E-value=0.00073  Score=61.81  Aligned_cols=66  Identities=18%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +..||++||- |.||+.+|..|+..|+  +|+.+|+++.+  +.++....    ...   ..+..++++++|+||++.
T Consensus         4 Ms~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            4 MSEKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             CCCcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            3458999999 9999999999999999  99999987621  12232221    122   235678999999999984

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.43  E-value=9.4e-05  Score=65.60  Aligned_cols=152  Identities=18%  Similarity=0.237  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  .+.....+...     ...+. .-+|   .++++       
T Consensus         9 gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (248)
T 3op4_A            9 GKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDN-----GKGMALNVTNPESIEAVLKAITDEF   81 (248)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-----ceEEEEeCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  899999876  22223333221     11111 1123   22223       


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|+.||......   .+   ....+..|+.....+.+.    +.+. ..+.||++|....           . .+
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~-----------~-~~  148 (248)
T 3op4_A           82 GGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKK-RQGRIINVGSVVG-----------T-MG  148 (248)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-HC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhh-----------c-CC
Confidence            37899999998754321   12   223345565554444444    4433 3466777654210           1 12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.++..++  +..|++..+
T Consensus       149 ~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  183 (248)
T 3op4_A          149 NAGQANYAAAKAGVIGFTKSMAREVA--SRGVTVNTV  183 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEE
Confidence            33333455544444456677777764  344544444

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.42  E-value=0.00073  Score=60.94  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++  ......++.... ...+..+. .-+|.   ++++      
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  899999876  222222232211 12333322 12232   2222      


Q ss_pred             -CCCcEEEEc-CCCCCCC--CCCh---hhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 020049           87 -TGMDLVIIP-AGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~-~g~~~~~--g~~r---~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN  138 (332)
                       .+.|++|++ +|....+  ..+.   ...+..|+.....+.+.+.++.  ..+.||++|.
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS  164 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSS  164 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECC
Confidence             378999998 6654322  1122   2334556555444444333221  1355666643

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.42  E-value=0.0003  Score=65.72  Aligned_cols=89  Identities=20%  Similarity=0.270  Sum_probs=58.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcC----CCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALT----GMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aDiVi~   94 (332)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.++. ...+.+   ...    ..   ..++.++++    +||+||+
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~---~G~----~~---~~~~~e~~~~a~~~aDlVil   74 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVD---EGF----DV---SADLEATLQRAAAEDALIVL   74 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHH---TTC----CE---ESCHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH---cCC----ee---eCCHHHHHHhcccCCCEEEE
Confidence            368999999 9999999999999887  8999998762 122222   111    11   135556555    5799999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +.  |              ...+.++.+.+..+.|+++|+.++
T Consensus        75 av--P--------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           75 AV--P--------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             CS--C--------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             eC--C--------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            84  2              223445555666666777665554

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.42  E-value=0.0013  Score=58.23  Aligned_cols=151  Identities=15%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|+++.  .....++.     ..+..+. .-+|   .++++       .
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3689999999999999999999998  8999998762  22222232     1222211 1123   22222       3


Q ss_pred             CCcEEEEcCCCCC--CC--CCCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..|++|++||...  .+  ..+.   ...+..|+..    .+.+.+.+.+. ..+.||++|.....            .+
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~------------~~  140 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVER-NHGHIINIGSTAGS------------WP  140 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------SC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCceEEEEccchhc------------cC
Confidence            6899999998753  11  1222   2334556544    44445555444 34567776643221            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+......+.+.++..++  +..|++..+
T Consensus       141 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  175 (248)
T 3asu_A          141 YAGGNVYGATKAFVRQFSLNLRTDLH--GTAVRVTDI  175 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            23223344443334455666776664  455654444

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.42  E-value=0.00011  Score=66.62  Aligned_cols=92  Identities=17%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc----HHHH---HHHhcCCCCCeEEE--EeCCCCHHhhcCCCc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVT---ADISHMDTGAVVRG--FLGQPQLENALTGMD   90 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~---~dl~~~~~~~~v~~--~~~~~d~~~a~~~aD   90 (332)
                      ++||+|+||+|++|++++..|+..|+  +|+.++++..    ....   ..+....  ..+..  +....++.++++++|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~~--v~~v~~D~~d~~~l~~~~~~~d   79 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASG--ANIVHGSIDDHASLVEAVKNVD   79 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTT--CEEECCCTTCHHHHHHHHHTCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhCC--CEEEEeccCCHHHHHHHHcCCC
Confidence            46899999999999999999999887  8889988741    1122   1232221  12111  101123567889999


Q ss_pred             EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      +||.+++...             ....+.+++.+.+..
T Consensus        80 ~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           80 VVISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             EEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             EEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            9999986432             122345666666665

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.42  E-value=0.00051  Score=61.18  Aligned_cols=114  Identities=16%  Similarity=0.211  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.  ......++....  ..+..+. .-+|.+   ++       +
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999998  899999876  233334444322  2333221 123321   12       2


Q ss_pred             CCCcEEEEcCCCC-CC-C--CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVP-RK-P--GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~-~~-~--g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                      ...|++|+++|.. .. +  ..+.   ...+..|+.....+.+.    +.+. ..+.||++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS  144 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTAS  144 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            3789999999865 21 1  1121   23344565554444444    4333 3466777654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.42  E-value=0.0013  Score=57.51  Aligned_cols=115  Identities=19%  Similarity=0.225  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEeCCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~---~~a-------~~   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|+++ +++.  ......++.........-....-+|.   +++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999987  88887 6654  22223334322211111011112232   222       34


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +.|+||++||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            799999999875321   111   23344556666    555666665443 456777664

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.42  E-value=0.00044  Score=62.29  Aligned_cols=117  Identities=14%  Similarity=0.165  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++..... ...+..+. .-+|.   ++++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  899999876  2233334433211 01333322 12332   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC-------CC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG-------MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g-------~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN  138 (332)
                       ...|++|.+||......       .+   ....+..|+.....+.+.+.++.  ..+.||++|.
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecC
Confidence             36899999998653211       11   12334556555555444443321  1266777654

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.41  E-value=0.00038  Score=61.42  Aligned_cols=114  Identities=17%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+ ++  ......++....  ..+..+. .-+|.   ++++      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  8999998 44  222333343322  2233221 12232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                       ...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence             37999999998753221   12   22344556555    555555555443 456777654

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.41  E-value=0.0009  Score=61.54  Aligned_cols=147  Identities=15%  Similarity=0.155  Sum_probs=82.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--------------cHHHHHHHhcCCCCCeEEEEe-CCCCH--
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL--   82 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d~--   82 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.              .......+....  ..+..+. .-+|.  
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            35799999999999999999999998  999998762              111222232221  2333221 12232  


Q ss_pred             -Hhhc-------CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchH
Q 020049           83 -ENAL-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        83 -~~a~-------~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                       ++.+       ...|++|..||.....   ..+.   ...+..|+...    +.+.+.+.+....+.||++|...... 
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~-  200 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR-  200 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS-
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC-
Confidence             2222       3789999999875322   1222   23345565444    44455555544567777776533221 


Q ss_pred             HHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          145 PIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       145 ~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                                 +.|..-.++.+......+.+.++..++
T Consensus       201 -----------~~~~~~~Y~asKaa~~~l~~~la~e~~  227 (317)
T 3oec_A          201 -----------GAPGQSHYAASKHGVQGLMLSLANEVG  227 (317)
T ss_dssp             -----------CCTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             -----------CCCCCcchHHHHHHHHHHHHHHHHHHh
Confidence                       222222344433334456677777764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.41  E-value=0.00032  Score=63.64  Aligned_cols=150  Identities=15%  Similarity=0.066  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC----
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----   87 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----   87 (332)
                      .+.++|.|+||+|++|..++..|+..|.  +|+++|++.  ......++.... ...+..+. .-+|   ..++++    
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK  100 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  899999876  222233332210 12233221 1123   223333    


Q ss_pred             ---CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHh----hCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           88 ---GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        88 ---~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~----~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                         ..|+||++||.....   ..+   ....+..|+.....+.+.+.+    ....+.||++|...   .        . 
T Consensus       101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~---~--------~-  168 (302)
T 1w6u_A          101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIY---A--------E-  168 (302)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTH---H--------H-
T ss_pred             HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccc---c--------c-
Confidence               459999999864321   112   233455566665555544433    33456677665421   0        0 


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      .+.+..-.++.+......+.+.++..+.
T Consensus       169 ~~~~~~~~Y~~sK~a~~~~~~~la~~~~  196 (302)
T 1w6u_A          169 TGSGFVVPSASAKAGVEAMSKSLAAEWG  196 (302)
T ss_dssp             HCCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             cCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence            1233333445544444456666666653

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.41  E-value=0.00012  Score=66.88  Aligned_cols=110  Identities=13%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-CCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVi~~~g~   98 (332)
                      +|||+|||+ |.+|+.++..|...|.  +|.++|+++..   .++.............   +..+++ +++|+||++.-.
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~~---~~~~~~~~~~D~vilavk~   72 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIVV---KGYEDVTNTFDVIIIAVKT   72 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEEE---EEGGGCCSCEEEEEECSCG
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeeccceec---CchHhcCCCCCEEEEeCCc
Confidence            479999999 9999999999998887  89999987610   0011111111112111   224555 899999998521


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      .                .+.++++.+..+. |+..|+.+.|-++...        .   +|.+++++-
T Consensus        73 ~----------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~--------~---~~~~~v~~g  113 (294)
T 3g17_A           73 H----------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLE--------H---IPFKNVCQA  113 (294)
T ss_dssp             G----------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGG--------G---CCCSCEEEC
T ss_pred             c----------------CHHHHHHHHHHhhCCCCEEEEeccCcccHh--------h---CCCCcEEEE
Confidence            1                1233444455444 5677888899988763        1   677787653

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.41  E-value=0.00018  Score=70.54  Aligned_cols=112  Identities=11%  Similarity=0.062  Sum_probs=68.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--H---HHHHHhcC-------CCCCeEEEEeCC----CCH
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G---VTADISHM-------DTGAVVRGFLGQ----PQL   82 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~---~~~dl~~~-------~~~~~v~~~~~~----~d~   82 (332)
                      .+++|.|+||+|++|++++..|...+.  +|+++++....  +   ....+...       ....++..+.+.    ..+
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            357899999999999999999976666  99999987621  1   11111110       001233332211    122


Q ss_pred             HhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      . ++.++|+||.+|+... ......++...|+...+++++.+.+ . ...++.+
T Consensus       227 ~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~-~-~~~~v~i  276 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYV  276 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT-T-TCEEEEE
T ss_pred             C-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh-C-CCcEEEe
Confidence            2 5689999999988653 1223445567799999999999987 3 3344444

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.40  E-value=9.9e-05  Score=67.25  Aligned_cols=162  Identities=16%  Similarity=0.197  Sum_probs=90.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcC--CCcEEEEcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVIIPA   96 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVi~~~   96 (332)
                      ||.|+||+|++|++++..|+..  ++  +|+++|++.....       . ...+.. .....++.++++  ++|+||+++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-------~-~~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-------G-IKFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-------T-CCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-------C-ceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999998876  56  8899987652110       1 011111 100112445666  899999998


Q ss_pred             CCCCCCC-CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC-CCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHH
Q 020049           97 GVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (332)
Q Consensus        97 g~~~~~g-~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN-P~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~  174 (332)
                      +...... ......+..|+.....+++.+.+.... .+|++|. -+..-..- ........-..+...+|.+.....++.
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~-~~~~~e~~~~~p~~~Y~~sK~~~e~~~  148 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETP-KNKVPSITITRPRTMFGVTKIAAELLG  148 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSC-SSSBCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCC-CCCccccccCCCCchHHHHHHHHHHHH
Confidence            7542111 233456678999999999998876544 4444432 11110000 000000001112344566555555665


Q ss_pred             HHHHHHhCCCCCCCc-eeEEEe
Q 020049          175 TFVAEVLGLDPRDVD-VPVVGG  195 (332)
Q Consensus       175 ~~la~~l~v~~~~v~-~~v~G~  195 (332)
                      ..+++..|++..-++ ..++|.
T Consensus       149 ~~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          149 QYYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHHhcCCeEEEEecCcEecc
Confidence            666666776654443 556664

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.40  E-value=0.001  Score=59.05  Aligned_cols=156  Identities=14%  Similarity=0.115  Sum_probs=85.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH---HHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++..   ....++.... ...+..+. .-+|.   ++++      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  89999987622   1222332210 11232221 11232   2223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|......            
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------  147 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV------------  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcHHhCc------------
Confidence             37899999998753211   12   22344556554    444455554443 46677776532211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       148 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  183 (260)
T 1x1t_A          148 ASANKSAYVAAKHGVVGFTKVTALETA--GQGITANAI  183 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhc--cCCEEEEEE
Confidence            122222344433334456667777664  444544433

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.40  E-value=0.00078  Score=60.54  Aligned_cols=115  Identities=15%  Similarity=0.146  Sum_probs=74.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--------------cHHHHHHHhcCCCCCeEEEEe-CCCCH--
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--------------TPGVTADISHMDTGAVVRGFL-GQPQL--   82 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d~--   82 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.              ......++....  .++..+. .-+|.  
T Consensus        10 gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   85 (287)
T 3pxx_A           10 DKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAA   85 (287)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHH
Confidence            35799999999999999999999998  999999871              112222333222  2333222 12232  


Q ss_pred             -Hhhc-------CCCcEEEEcCCCCCCC-CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           83 -ENAL-------TGMDLVIIPAGVPRKP-GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        83 -~~a~-------~~aDiVi~~~g~~~~~-g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                       ++++       ...|++|+.||..... ..+   ....+..|+.....+.+.+..+- ..+.||+++.
T Consensus        86 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           86 VSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence             1222       3789999999875322 122   33456778888888888887765 4567777765

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.40  E-value=0.00039  Score=61.37  Aligned_cols=114  Identities=20%  Similarity=0.193  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------CCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~~a   89 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++...  .++.... ....... .-+|   .++++       ...
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~-D~~~~~~~~~~~~~~~~~~g~i   78 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPL--REAAEAV-GAHPVVM-DVADPASVERGFAEALAHLGRL   78 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHHTT-TCEEEEC-CTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHc-CCEEEEe-cCCCHHHHHHHHHHHHHHcCCC
Confidence            35899999999999999999999998  899999875211  1111111 1111111 1123   22223       358


Q ss_pred             cEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCC
Q 020049           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  139 (332)
Q Consensus        90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP  139 (332)
                      |++|.++|......   .+   ....+..|+.....+.+.+.++   ...+.||++|..
T Consensus        79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  137 (245)
T 1uls_A           79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR  137 (245)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence            99999998753221   11   2334556776666665555443   234667777653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.40  E-value=0.0006  Score=60.88  Aligned_cols=153  Identities=12%  Similarity=-0.020  Sum_probs=85.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---Hhh-------cCCCc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---ENA-------LTGMD   90 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~a-------~~~aD   90 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++... ...+....  ...... .-+|.   +++       +...|
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~--~~~~~~-Dv~~~~~v~~~~~~~~~~~g~iD  101 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG--AVALYG-DFSCETGIMAFIDLLKTQTSSLR  101 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT--CEEEEC-CTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC--CeEEEC-CCCCHHHHHHHHHHHHHhcCCCC
Confidence            5799999999999999999999998  899999987321 11122211  111111 11232   122       24789


Q ss_pred             EEEEcCCCCCCCC--CCh---hhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           91 LVIIPAGVPRKPG--MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        91 iVi~~~g~~~~~g--~~r---~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      ++|..||......  .+.   ...+..|+.....+.+.+..+   ...+.||++|.....            .+.+..-.
T Consensus       102 ~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~------------~~~~~~~~  169 (260)
T 3gem_A          102 AVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTR------------KGSSKHIA  169 (260)
T ss_dssp             EEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGG------------TCCSSCHH
T ss_pred             EEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhc------------CCCCCcHh
Confidence            9999998653322  222   234455655555554444332   234667777643211            12333334


Q ss_pred             EEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      ++.+......+.+.++..++-   .|++..+.
T Consensus       170 Y~asKaa~~~l~~~la~e~~~---~Irvn~v~  198 (260)
T 3gem_A          170 YCATKAGLESLTLSFAARFAP---LVKVNGIA  198 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT---TCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCC---CCEEEEEe
Confidence            444444445567778887762   36554443

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.40  E-value=0.0016  Score=57.10  Aligned_cols=109  Identities=13%  Similarity=0.208  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEE-EEeCCCCHHh-------hcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLEN-------ALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~-~~~~~~d~~~-------a~~~aDiV   92 (332)
                      +++.|+||+|.+|..++..|+..|.  +|+++|++... ...++.   . ..+. ..+. .+.++       .+...|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~---~-~~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG---A-VPLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT---C-EEEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC---c-EEEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999998  89999998632 222231   0 0111 0111 22222       34589999


Q ss_pred             EEcCCCCCCC---CCCh---hhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecC
Q 020049           93 IIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        93 i~~~g~~~~~---g~~r---~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tN  138 (332)
                      |..+|.....   ..+.   ...+..|+...    +.+.+.+.+.. .+.||++|.
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            9999865321   1222   23344455444    44444444443 456777664

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.40  E-value=0.0021  Score=56.87  Aligned_cols=152  Identities=12%  Similarity=0.095  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~------   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  ..+..+. .-+|.   +++++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999998  899999987  344444554432  3343322 12332   22333      


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ..|++|..||......   .+.   ...+..|+..    .+.+.+.+.+.. .+.||++|......            +.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------~~  149 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGATASLR------------GG  149 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTC------------CC
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHHHcC------------CC
Confidence            6799999999754221   222   2334455444    444555555443 46666665422111            12


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCce
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDV  190 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~  190 (332)
                      |..-.++.+......+.+.++..++  +..|++
T Consensus       150 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~v  180 (252)
T 3h7a_A          150 SGFAAFASAKFGLRAVAQSMARELM--PKNIHV  180 (252)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEE
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhh--hcCCEE
Confidence            2222334433333456667777764  344555

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.39  E-value=0.0029  Score=59.05  Aligned_cols=157  Identities=16%  Similarity=0.146  Sum_probs=93.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL-GQPQL---ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~   86 (332)
                      .+.+.|+||+|.+|..++..|+..|.  +|+++|+++.         .....++....  ..+..+. .-+|.   ++++
T Consensus        45 gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~  120 (346)
T 3kvo_A           45 GCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAAV  120 (346)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHH
T ss_pred             CCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHH
Confidence            45799999999999999999999998  9999998762         12333444332  2333221 12232   2222


Q ss_pred             -------CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHH
Q 020049           87 -------TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        87 -------~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                             ...|++|.+||......   .+   ....+..|+.....+.+.+..+   ...+.||++|.+.....      
T Consensus       121 ~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~------  194 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNP------  194 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCG------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCC------
Confidence                   38999999998753221   22   2334566776666666665433   23567888877664431      


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                          ..++..-.++.+...-..+.+.+|..++   ..|++..+
T Consensus       195 ----~~~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrvn~v  230 (346)
T 3kvo_A          195 ----VWFKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAVNAL  230 (346)
T ss_dssp             ----GGTSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEEEEE
T ss_pred             ----CCCCCchHHHHHHHHHHHHHHHHHHHhc---CCcEEEEE
Confidence                0022222344443334456778888887   34554444

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.39  E-value=0.00042  Score=61.80  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=45.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||+ |.+|+.++..|...|+  +|+++|.........++....  ..       ++.++++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g--~~-------~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG--VT-------ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT--CE-------ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC--Cc-------CCHHHHHhcCCEEEEEC
Confidence            58999999 9999999999998888  899988732222222332221  11       13467789999999985

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.39  E-value=0.00098  Score=60.63  Aligned_cols=157  Identities=12%  Similarity=0.100  Sum_probs=89.8

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------
Q 020049           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------   86 (332)
                      .+++.|+||+|  .+|..++..|+..|.  +|++.|+++ ......++........... ..-+|   .++++       
T Consensus        30 ~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~Dv~d~~~v~~~~~~~~~~~  106 (296)
T 3k31_A           30 GKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLTVP-CDVSDAESVDNMFKVLAEEW  106 (296)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEEEE-CCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEE-cCCCCHHHHHHHHHHHHHHc
Confidence            35799999976  999999999999998  899999986 2222222221111111111 11123   22222       


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCC---hhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-----~--g~~---r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|.+||....     +  ..+   ....+..|+.....+.+.+..+-. .+.||++|.....            .
T Consensus       107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~------------~  174 (296)
T 3k31_A          107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE------------K  174 (296)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT------------S
T ss_pred             CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc------------c
Confidence            367999999997532     1  122   234456788878888887776643 5677777543221            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.+|..++  +..|++..+
T Consensus       175 ~~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrvn~v  210 (296)
T 3k31_A          175 VVPHYNVMGVCKAALEASVKYLAVDLG--KQQIRVNAI  210 (296)
T ss_dssp             CCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            223223344443334456677777764  344544433

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.39  E-value=0.00087  Score=60.46  Aligned_cols=157  Identities=11%  Similarity=0.086  Sum_probs=88.6

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------   86 (332)
                      .++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++............ .-+|   .++++       
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKC-DVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEc-CCCCHHHHHHHHHHHHHHc
Confidence            3579999998  8999999999999988  899999876 22233333321111111111 1123   22222       


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-----~--g~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      ...|++|++||....     +  ..+   ....+..|+.....+.+.+.++.  ..+.||++|.....            
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~------------  165 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAE------------  165 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGT------------
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhc------------
Confidence            368999999987532     1  122   23345678777777777776553  24667777542211            


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       166 ~~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  202 (285)
T 2p91_A          166 KVVPHYNVMGIAKAALESTVRYLAYDIA--KHGHRINAI  202 (285)
T ss_dssp             SBCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            1122223344444334456666776663  344544444

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.39  E-value=0.00063  Score=59.48  Aligned_cols=150  Identities=15%  Similarity=0.069  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc---------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL---------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~---------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++....     .     ....+.. -+|   .++++         
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~-----~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   70 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQA-----D-----SNILVDGNKNWTEQEQSILEQTASSLQG   70 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTS-----S-----EEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCccccc-----c-----ccEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999987  8999998762110     0     1111100 011   11222         


Q ss_pred             CCCcEEEEcCCCCCCC----CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           87 TGMDLVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      ...|++|.++|.....    ..+   ....+..|+.....+.+.+.++. ..+.||++|.....            .+.|
T Consensus        71 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~~~~  138 (236)
T 1ooe_A           71 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM------------GPTP  138 (236)
T ss_dssp             CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCT
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc------------cCCC
Confidence            3799999999864321    111   23345667777777777666553 24667777653221            1223


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..-.++.+......+.+.++..++..+..|++.++
T Consensus       139 ~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v  173 (236)
T 1ooe_A          139 SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTI  173 (236)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEE
Confidence            22233333333334555565555433555655444

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.39  E-value=0.00029  Score=62.77  Aligned_cols=160  Identities=14%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             CCCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc----
Q 020049           17 GAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL----   86 (332)
Q Consensus        17 ~~~~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~----   86 (332)
                      ..+.++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++............ .-+|   .++.+    
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPC-DVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEEC-CCCCHHHHHHHHHHHH
Confidence            3445789999998  8999999999999998  999999876 22333333221111111111 1123   22222    


Q ss_pred             ---CCCcEEEEcCCCCCC-----C--C-CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHH
Q 020049           87 ---TGMDLVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        87 ---~~aDiVi~~~g~~~~-----~--g-~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~  151 (332)
                         ...|++|.+||....     +  . .+   ....+..|+.....+.+.+.++. +.+.||+++.....         
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~---------  158 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---------  158 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGT---------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccc---------
Confidence               367999999987532     1  1 22   23345667777777777766554 35567766543211         


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         .+.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       159 ---~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  195 (271)
T 3ek2_A          159 ---RAIPNYNTMGLAKAALEASVRYLAVSLG--AKGVRVNAI  195 (271)
T ss_dssp             ---SBCTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             ---cCCCCccchhHHHHHHHHHHHHHHHHHH--hcCcEEEEE
Confidence               1223333444443334456667777664  344544444

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=97.39  E-value=0.0013  Score=59.04  Aligned_cols=158  Identities=12%  Similarity=0.051  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-----
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-----   86 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-----   86 (332)
                      .+.+++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ..++..+. .-+|.   ++++     
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~  101 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALK  101 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999998  999999876  223333342211 12233221 11232   1222     


Q ss_pred             --CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 --~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                        ...|++|.+||......   .+   ....+..|+.....+.+.+...   ...+.||++|.....            .
T Consensus       102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~  169 (277)
T 4fc7_A          102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGN------------R  169 (277)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHH------------H
T ss_pred             HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhC------------C
Confidence              37899999998643221   12   2234556666665555554322   135667777642211            0


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV  192 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v  192 (332)
                      +.+..-.++.+......+.+.+|..++  +..|++..
T Consensus       170 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~  204 (277)
T 4fc7_A          170 GQALQVHAGSAKAAVDAMTRHLAVEWG--PQNIRVNS  204 (277)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhh--hcCeEEEE
Confidence            222222344443334456677777764  33454333

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.38  E-value=0.00086  Score=59.05  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=82.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-c--cCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhh-------cCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVNT--PGVTADISHMDTGAVVRGFLGQPQLENA-------LTG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D--~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~   88 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++. |  +++.  .....++ .   ..++.   ...+.+++       +..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~---~~~~~---~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P---GTIAL---AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T---TEEEC---CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C---CCccc---CHHHHHHHHHHHHHHcCC
Confidence            4799999999999999999999998  89999 6  7652  2222223 1   11111   12233332       347


Q ss_pred             CcEEEEcCCCCCC---C---CCC---hhhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           89 MDLVIIPAGVPRK---P---GMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        89 aDiVi~~~g~~~~---~---g~~---r~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      .|++|++||....   .   ..+   ....+..|+.....+.    +.+.+. ..+.||++|.-....            
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------  139 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITSSVGKK------------  139 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGTS------------
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECChhhCC------------
Confidence            8999999987543   1   122   2234455655544444    444333 356677776532211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       140 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  175 (244)
T 1zmo_A          140 PLAYNPLYGPARAATVALVESAAKTLS--RDGILLYAI  175 (244)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            223333444443334456666776664  344544333

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.38  E-value=0.00053  Score=61.09  Aligned_cols=157  Identities=14%  Similarity=0.138  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++. +.++  ......++....  ..+..+. .-+|.   ++++      
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999998  88888 5544  222333444332  2222211 12232   2223      


Q ss_pred             -CCCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           87 -TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                       ...|++|..||....  +  ..+.   ...+..|+.....+.+.+.++-. .+.||++|....           ...+.
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~~~  152 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG-----------RDGGG  152 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH-----------HHCCS
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh-----------ccCCC
Confidence             378999999985421  1  1222   34456788877788877766542 456777654211           11223


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      |..-.++.+......+.+.++..++  +. |++..+.
T Consensus       153 ~~~~~Y~asKaa~~~l~~~la~e~~--~~-I~vn~v~  186 (259)
T 3edm_A          153 PGALAYATSKGAVMTFTRGLAKEVG--PK-IRVNAVC  186 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHC--CC-CEEEEEE
Confidence            3333455544444567778888876  33 6554443

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.38  E-value=0.0028  Score=57.49  Aligned_cols=156  Identities=16%  Similarity=0.126  Sum_probs=91.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc----HHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFL-GQPQL---EN-------   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------   84 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|.+..    ......+....  ..+..+. .-+|.   ++       
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999998  8999998631    12222233221  2333221 11232   11       


Q ss_pred             hcCCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           85 ALTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .+...|++|..||.....+    .+   ....+..|+.....+.+.+.++-. .+.||++|.-...            .+
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~------------~~  192 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY------------QP  192 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT------------SC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc------------cC
Confidence            2347899999998753221    12   234567788888888888776653 4677777643211            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.++..++  +..|++..+
T Consensus       193 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  227 (294)
T 3r3s_A          193 SPHLLDYAATKAAILNYSRGLAKQVA--EKGIRVNIV  227 (294)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            23223344443344456677777764  334544333

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.37  E-value=0.00013  Score=64.97  Aligned_cols=101  Identities=21%  Similarity=0.250  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCC--CcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTG--MDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~--aDiVi~~~g   97 (332)
                      |||.|+||+|++|++++..|+. ++  +|+++|++....        . .  +.. .....++.+++++  +|+||+++|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~--------~-~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ--------G-G--YKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT--------T-C--EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC--------C-C--ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999984 65  899999875210        0 1  221 1001124455665  999999998


Q ss_pred             CCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        98 ~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .....  ..+....+..|+.....+++.+.+..  +.+|++|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            65321  12344566788999999999988754  3555554

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.37  E-value=0.00033  Score=62.46  Aligned_cols=157  Identities=13%  Similarity=0.166  Sum_probs=88.5

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhcC------
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~------   87 (332)
                      .+++.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++........... ..-+|   .+++++      
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFR-ADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTCCEEEE-CCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCcEEEE-CCCCCHHHHHHHHHHHHHHc
Confidence            4579999998  8999999999999888  899999876 2223333432111111111 11223   222333      


Q ss_pred             -CCcEEEEcCCCCCC-----C--CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           88 -GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        88 -~aDiVi~~~g~~~~-----~--g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ..|++|++||....     +  ..+   ....+..|+.....+.+.+.++. +.+.||++|.....            .
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~  152 (261)
T 2wyu_A           85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------K  152 (261)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------------S
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEeccccc------------C
Confidence             68999999987532     1  122   23445678877777777776543 23567776542211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       153 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  188 (261)
T 2wyu_A          153 VVPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAI  188 (261)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            122222344443334456666777663  334544433

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.36  E-value=0.00088  Score=61.02  Aligned_cols=117  Identities=15%  Similarity=0.239  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++  ......++..... ...+..+. .-+|.   ++++      
T Consensus        26 ~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           26 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  899999876  2233334433211 01333322 12232   2223      


Q ss_pred             -CCCcEEEEcCCCCCCCC-----CC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG-----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g-----~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN  138 (332)
                       ...|++|.+||......     .+   ....+..|+.....+.+.+.++.  ..+.||++|.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS  166 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSS  166 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence             37899999998653211     12   12334556554444444443321  1266777754

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.36  E-value=0.00029  Score=61.85  Aligned_cols=157  Identities=19%  Similarity=0.228  Sum_probs=85.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|++..  .....++.... ...+..+. .-+|   ++++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999988  8999998752  22222332200 12222221 1123   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                       +.|+||+++|......   .+   ....+..|+.....+.    +.+.+. +.+.||++|...   .        .. +
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~---~--------~~-~  150 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQ-RWGRIVNISSVV---G--------FT-G  150 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHH-TCEEEEEECCHH---H--------HH-C
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCcEEEEEccHH---h--------cC-C
Confidence             8999999998654221   12   2334556766664444    444433 345666665411   0        01 2


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+......+.+.+++.++  +..+++.++.
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v~  186 (248)
T 2pnf_A          151 NVGQVNYSTTKAGLIGFTKSLAKELA--PRNVLVNAVA  186 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            23222334433333455666666654  3345544443

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.35  E-value=0.00052  Score=60.44  Aligned_cols=158  Identities=17%  Similarity=0.136  Sum_probs=86.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC-C--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcC-----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-----   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~-~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-----   87 (332)
                      .++|.|+||+|++|+.++..|+..|.  +|+++|++ .  ......++....  ..+..+.. -+|   ++++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999988  89999997 4  233333443321  23333221 123   223344     


Q ss_pred             --CCcEEEEcCCC-CCCC---CCC---hhhhHhhhHHHHHHHHH----HHHhh----CCCcEEEEecCCCCchHHHHHHH
Q 020049           88 --GMDLVIIPAGV-PRKP---GMT---RDDLFNINAGIVRTLCE----GIAKC----CPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        88 --~aDiVi~~~g~-~~~~---g~~---r~~~~~~n~~~~~~i~~----~i~~~----~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                        +.|+||++||. ....   ..+   ....+..|+.....+.+    .+.+.    .+.+.||+++...   .      
T Consensus        83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~---~------  153 (258)
T 3afn_B           83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIA---G------  153 (258)
T ss_dssp             HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTH---H------
T ss_pred             cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchh---h------
Confidence              89999999986 3211   112   12234455554444444    44332    2236666665421   1      


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                        ...+.|+.-.++.+......+.+.+++.++  +..+++.++.
T Consensus       154 --~~~~~~~~~~Y~~sK~a~~~~~~~~~~e~~--~~gi~v~~v~  193 (258)
T 3afn_B          154 --HTGGGPGAGLYGAAKAFLHNVHKNWVDFHT--KDGVRFNIVS  193 (258)
T ss_dssp             --HHCCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --ccCCCCCchHHHHHHHHHHHHHHHHHHhhc--ccCeEEEEEe
Confidence              011233333455544444456666676663  3345444443

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.35  E-value=0.00012  Score=62.49  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=67.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcC---CCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aDiVi~~   95 (332)
                      ++|.|+||+|++|+.++..|+..    +|+++|+++.  .....++.......++.   ...++.++++   +.|+||++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999876    8999998752  22222221100000000   0112334455   89999999


Q ss_pred             CCCCCCC------CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           96 AGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        96 ~g~~~~~------g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|.....      .......+..|+.....+.+.+.+. +.+.||++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9865321      1123445677888888888887432 3456666665

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.35  E-value=0.00087  Score=62.42  Aligned_cols=87  Identities=22%  Similarity=0.258  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|.+...  ..+.+   ..    +..   + ++.+++++||+||++. 
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~---~G----~~~---~-~~~e~~~~aDvVilav-   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEA---HG----LKV---A-DVKTAVAAADVVMILT-   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHH---TT----CEE---E-CHHHHHHTCSEEEECS-
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHH---CC----CEE---c-cHHHHHhcCCEEEEeC-
Confidence            468999999 9999999999998887  89999987632  22221   11    122   1 4578899999999984 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHH-HHHhhC-CCcEEEEe
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCE-GIAKCC-PNATVNLI  136 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~-~i~~~~-p~a~viv~  136 (332)
                       |              .....++++ .+..+. |+++|+.+
T Consensus        81 -p--------------~~~~~~v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           81 -P--------------DEFQGRLYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             -C--------------HHHHHHHHHHHTGGGCCTTCEEEES
T ss_pred             -C--------------cHHHHHHHHHHHHhhCCCCCEEEEc
Confidence             2              112245555 666665 56655543

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.34  E-value=0.0022  Score=57.92  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL-GQPQL---ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~   86 (332)
                      .+++.|+||+|.+|..++..|++.|.  +|+++|++..         +....++....  .++..+. .-+|.   ++++
T Consensus         9 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   84 (285)
T 3sc4_A            9 GKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAV   84 (285)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            45799999999999999999999998  9999998762         12233333221  2333322 12232   2222


Q ss_pred             -------CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCCCCchHHHHHHH
Q 020049           87 -------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        87 -------~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP~~~~t~~~~~~  150 (332)
                             ...|++|++||.....   ..+.   ...+..|+.....+.+.+.++-   ..+.||++|.......      
T Consensus        85 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~------  158 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP------  158 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC------
Confidence                   3899999999875322   1222   3345578877777777766553   3467888776543321      


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                           .++..-.++.+......+.+.+|..++  +..|++..+
T Consensus       159 -----~~~~~~~Y~asKaal~~~~~~la~e~~--~~gI~vn~v  194 (285)
T 3sc4_A          159 -----KWLRPTPYMMAKYGMTLCALGIAEELR--DAGIASNTL  194 (285)
T ss_dssp             -----GGSCSHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEE
T ss_pred             -----CCCCCchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence                 011112233333333445667777664  444544444

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.34  E-value=0.0026  Score=57.55  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=31.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~   56 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.| ++.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            35799999999999999999999998  899999 765

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.34  E-value=0.0016  Score=58.11  Aligned_cols=148  Identities=12%  Similarity=0.049  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------CCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~~a   89 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..         ......... .-+|   .++++       ...
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~---------~~~~~~~~~-Dl~~~~~v~~~~~~~~~~~g~i   75 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPG---------EAKYDHIEC-DVTNPDQVKASIDHIFKEYGSI   75 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCC---------SCSSEEEEC-CTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCccc---------CCceEEEEe-cCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999998  89999987522         001111111 1122   22222       379


Q ss_pred             cEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           90 DLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC---PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        90 DiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      |++|.+||.....   ..+   ....+..|+.....+.+.+.++.   ..+.||++|.....            .+.+..
T Consensus        76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~------------~~~~~~  143 (264)
T 2dtx_A           76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQAS------------IITKNA  143 (264)
T ss_dssp             CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGT------------SCCTTB
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhc------------cCCCCc
Confidence            9999999875321   112   23345566666555555444332   34567777653211            122333


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      -.++.+......+.+.++..++  +. |++.++.
T Consensus       144 ~~Y~~sK~a~~~~~~~la~e~~--~~-i~vn~v~  174 (264)
T 2dtx_A          144 SAYVTSKHAVIGLTKSIALDYA--PL-LRCNAVC  174 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhc--CC-cEEEEEE
Confidence            3344443344456677777775  33 6555554

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.33  E-value=0.00035  Score=61.20  Aligned_cols=114  Identities=19%  Similarity=0.234  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++. ++++  ......++....  .++..+. .-+|   ++++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999998  88884 6654  222223333211  2333222 1123   223333      


Q ss_pred             -CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecC
Q 020049           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tN  138 (332)
                       ..|+||++||......   .+   ....+..|+.....+.+.+.++   ...+.||++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence             7899999998754321   12   2234556666655555444433   23466777764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.33  E-value=0.00068  Score=60.82  Aligned_cols=157  Identities=15%  Similarity=0.129  Sum_probs=89.1

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------   86 (332)
                      .++|.|+||+  |.+|..++..|+..|.  +|+++|+++ ......++............ .-+|   .++++       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~-D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYEL-DVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEc-CCCCHHHHHHHHHHHHHHc
Confidence            3579999998  8999999999999988  899999876 22233334321111111111 1123   22222       


Q ss_pred             CCCcEEEEcCCCCCC-----C--CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~-----~--g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|+.||....     +  ..+   ....+..|+.....+.+.+.++- +.+.||++|.....            .
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~------------~  150 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST------------K  150 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT------------S
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc------------C
Confidence            367999999987532     1  122   23445678877777877776553 23567777642211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       151 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (275)
T 2pd4_A          151 YMAHYNVMGLAKAALESAVRYLAVDLG--KHHIRVNAL  186 (275)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            122222344443334456666777663  344544443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.33  E-value=0.002  Score=56.13  Aligned_cols=102  Identities=18%  Similarity=0.190  Sum_probs=60.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++.  ......++.... ...+..+. +-+|   ..++++       
T Consensus         3 k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            3 KVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  899999876  233333343111 12232221 1122   223333       


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHH
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA  125 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~  125 (332)
                      ..|++|++||......   .+.   ...+..|+.....+.+.+.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~  123 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFL  123 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999998753221   122   2334556555444444443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.33  E-value=0.0035  Score=56.74  Aligned_cols=158  Identities=15%  Similarity=0.142  Sum_probs=87.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      +++.|+||+|.+|..++..|+..|. ...|++.|++.  ......++........+..+. +-+|   .++++       
T Consensus        34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  113 (287)
T 3rku_A           34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEF  113 (287)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGG
T ss_pred             CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            5799999999999999999987764 23899999876  233333443321123333221 1122   22223       


Q ss_pred             CCCcEEEEcCCCCCCC----CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~----g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ...|++|.+||.....    ..+.   ...+..|+.....+.+.    +.+. ..+.||+++.....            .
T Consensus       114 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~IV~isS~~~~------------~  180 (287)
T 3rku_A          114 KDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAK-NSGDIVNLGSIAGR------------D  180 (287)
T ss_dssp             CSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCGGGT------------S
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEECChhhc------------C
Confidence            3689999999965321    1222   23445565554444444    4444 34566776543221            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       181 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  216 (287)
T 3rku_A          181 AYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILI  216 (287)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            233333344443334456677777765  455654444

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.32  E-value=0.00071  Score=59.72  Aligned_cols=105  Identities=16%  Similarity=0.216  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--H-HHHHHhcCCCCCeEEEEeCCCCHHhhc----CCCcEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVI   93 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~-~~~dl~~~~~~~~v~~~~~~~d~~~a~----~~aDiVi   93 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++..  . ...|+.+.            .+.++++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~------------~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRK------------QAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCH------------HHHHHHHHHhCCCCCEEE
Confidence            3699999999999999999999998  89999987621  0 11122211            1223334    3459999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCC
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~  140 (332)
                      ++||..... ......+..|+.....+.+.+.++   ...+.||++|...
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            999875412 224555666766665555555433   2236677776543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.31  E-value=0.00034  Score=63.42  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=48.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||+ |.+|+.++..|...|+  +|+++|+++..  ...+....    +..   +++++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDA--CKEFQDAG----EQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999999 9999999999998887  89999987622  12233221    222   346678889999999984

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.30  E-value=0.0015  Score=57.57  Aligned_cols=155  Identities=17%  Similarity=0.178  Sum_probs=88.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|.+.   .+....++....  .++..+. .-+|.   ++++       
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            5799999999999999999999998  899988755   223333444332  2233221 12232   2223       


Q ss_pred             CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|++||.....   ..+.   ...+..|+.....+.+.+    .+. ..+.||++|.-..           . .+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~~  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQ-RSGAIINLSSVVG-----------A-VG  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-HC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEEcchhh-----------c-CC
Confidence            3789999999875322   1222   234556665555554444    444 3456666654110           1 12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+......+.+.++..++  +..|++..+.
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v~  183 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAVA  183 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            34334455554444556777777765  3455544443

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.29  E-value=0.0021  Score=59.37  Aligned_cols=35  Identities=17%  Similarity=0.093  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~   56 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++| +++
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35799999999999999999999998  899999 765

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.29  E-value=0.0017  Score=59.55  Aligned_cols=65  Identities=22%  Similarity=0.384  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||++||- |.||+.+|..|+..|+  +|+.+|+++  ..+..+.....    ..   ..++.++.++||+||.+.
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~Ga----~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAGA----SA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTTC----EE---CSSHHHHHTTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcCC----EE---cCCHHHHHhcCCceeecC
Confidence            358999999 9999999999999999  999999875  23334443321    21   235688999999999983

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.28  E-value=0.0032  Score=55.30  Aligned_cols=113  Identities=16%  Similarity=0.216  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeE-EEEe-CCCCH---Hhhc-----
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVV-RGFL-GQPQL---ENAL-----   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v-~~~~-~~~d~---~~a~-----   86 (332)
                      +.++|.|+||+|.+|+.++..|++.|.  +|+++|+++.  .....++.     ..+ ..+. .-+|.   ++++     
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEA   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHh
Confidence            345899999999999999999999988  8999998752  22222331     112 2111 11232   2222     


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                       ...|+||++||......   .+   ....+..|+..    .+.+.+.+.+.. .+.||++|..
T Consensus        83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~  145 (254)
T 2wsb_A           83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSM  145 (254)
T ss_dssp             HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecc
Confidence             57899999998753221   12   12344556655    444445554443 4566666543

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.28  E-value=0.0012  Score=58.22  Aligned_cols=112  Identities=15%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCHH------hhcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLE------NALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~------~a~~~aDiV   92 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++..  ..++...   ..+..+. .-+|.+      +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKY---PGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGS---TTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhc---cCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            45899999999999999999999998  99999987521  1112211   1222221 122321      224678999


Q ss_pred             EEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCC
Q 020049           93 IIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  139 (332)
Q Consensus        93 i~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP  139 (332)
                      |.++|......   .+.   ...+..|+.....+.+.    +.+. ..+.||++|..
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  134 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSV  134 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCS
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEech
Confidence            99998753211   121   22344565544444444    4433 34667777653

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.26  E-value=0.00073  Score=61.67  Aligned_cols=98  Identities=12%  Similarity=0.122  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-----C-CCcEEEEEccCCcHHHHHHHhc-CCC---C--C-----eEEEEeCCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---G--A-----VVRGFLGQPQ   81 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~-----~-~~~ei~L~D~~~~~~~~~dl~~-~~~---~--~-----~v~~~~~~~d   81 (332)
                      ++|||+|||+ |.+|+.++..|...     | +  +|.++|+ +  .....+.. ...   .  .     .+..   +++
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~---~~~   77 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCV---TDN   77 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEE---ESC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceE---ecC
Confidence            3479999999 99999999999887     7 6  9999997 3  22222332 110   0  0     0111   134


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCc
Q 020049           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS  142 (332)
Q Consensus        82 ~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~  142 (332)
                       .++++++|+||++.....                +.++++.+..+. |+..||.++|..+.
T Consensus        78 -~~~~~~~D~vil~vk~~~----------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           78 -PAEVGTVDYILFCTKDYD----------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             -HHHHCCEEEEEECCSSSC----------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             -ccccCCCCEEEEecCccc----------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence             356799999999953221                234455565544 56677777887654

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.26  E-value=0.0013  Score=57.81  Aligned_cols=107  Identities=12%  Similarity=0.063  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc---------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL---------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~---------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++....     .     ....+. .-+|   .++++         
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~-----~-----~~~~~~~D~~~~~~v~~~~~~~~~~~~~   74 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEA-----S-----ASVIVKMTDSFTEQADQVTAEVGKLLGD   74 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTS-----S-----EEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhcc-----C-----CcEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999988  8999998762110     0     111110 0111   12222         


Q ss_pred             CCCcEEEEcCCCCCCC----CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      ...|++|+++|.....    ..+   ....+..|+.....+.+.+.++- ..+.||++|.
T Consensus        75 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           75 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            3789999999865321    111   22345567766666666665543 2466777765

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.26  E-value=0.004  Score=55.62  Aligned_cols=151  Identities=17%  Similarity=0.109  Sum_probs=84.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------CC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------TG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------~~   88 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++...  ..++..    ..+..+. .-+|.   ++++       ..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~--~~~~~~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER--LKALNL----PNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH--HHTTCC----TTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHhhc----CCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            35799999999999999999999998  89999987421  111111    1222211 12232   2223       37


Q ss_pred             CcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      .|++|.+||......   .+.   ...+..|+.....    +.+.+.+.. .+.||++|.....            .+.|
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~~~~------------~~~~  154 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSIAGK------------KTFP  154 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT------------SCCT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhC------------CCCC
Confidence            899999998753221   222   2334556555544    555554443 4566666543211            1233


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..-.++.+......+.+.++..++  +..|++..+
T Consensus       155 ~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  187 (266)
T 3p19_A          155 DHAAYCGTKFAVHAISENVREEVA--ASNVRVMTI  187 (266)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            333344443334456677777764  344544444

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.0014  Score=58.77  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=89.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|++.+.+.   .+....++....  ..+..+. .-+|.   ++++       
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4699999999999999999999998  888875543   233333343332  2222221 12232   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      ...|++|..||......   .+   ....+..|+.....+.+.+.++- +.+.||++|....           . .+.|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~-~~~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV-----------G-LLHPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH-----------H-HCCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh-----------c-cCCCC
Confidence            37899999998753221   12   23345577777777666665543 3467777764221           0 12333


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.++..++  +..|++..+
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            33445544444567777888775  455654444

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.26  E-value=0.0033  Score=56.55  Aligned_cols=154  Identities=16%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------~   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|+++++++  ......++....  ..+..+. .-+|.   ++++       .
T Consensus        45 k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           45 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999887  899988765  233334444322  2333222 12232   2222       4


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ..|+||.+||.....   ..+   ....+..|+..    .+.+.+.+.+.. .+.||++|.....            .+.
T Consensus       121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~~~------------~~~  187 (285)
T 2c07_A          121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVGL------------TGN  187 (285)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHHH------------HCC
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECChhhc------------cCC
Confidence            789999999875321   112   22344556555    444444444433 4566666653210            122


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+......+.+.++..+.  +..+++.++
T Consensus       188 ~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  221 (285)
T 2c07_A          188 VGQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  221 (285)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence            3223344443333445566666653  334544444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.26  E-value=0.00039  Score=60.32  Aligned_cols=69  Identities=19%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh-cCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVi~~~   96 (332)
                      |||+|+|+ |.+|+.++..|...++  +++++|.++..  +.++.+.. ...+.. ...++   ++++ +++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~-~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKL-KATIIH-GDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHS-SSEEEE-SCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHc-CCeEEE-cCCCCHHHHHhcCcccCCEEEEec
Confidence            68999999 9999999999999888  89999987622  22222111 112211 11122   3333 78999999985

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.26  E-value=0.00052  Score=61.05  Aligned_cols=67  Identities=18%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||+|||+ |.+|..++..|...+.  +|.++|+++...  .++.+.. .  +..   .+++.++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~--~~~~~~~-g--~~~---~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQL-A--LPY---AMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHH-T--CCB---CSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHHc-C--CEe---eCCHHHHHhcCCEEEEEe
Confidence            3579999998 9999999999988775  899999875221  1121110 0  111   346778889999999995

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.25  E-value=0.01  Score=52.75  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=87.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh--cCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA--LTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a--~~~aDiVi~   94 (332)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|++..+..+..+....  .+...+. .-+|.   ++.  .-.-|++|.
T Consensus        10 KvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A           10 RKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            4678889999999999999999998  999999986443333344332  1222111 11221   111  234799999


Q ss_pred             cCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           95 PAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        95 ~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      .||......   .+   ....+.-|+..    .+..++.|.+....+.||+++.-....            +.|..-.++
T Consensus        86 NAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~------------g~~~~~~Y~  153 (247)
T 4hp8_A           86 NAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ------------GGIRVPSYT  153 (247)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCSSCHHHH
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC------------CCCCChHHH
Confidence            998754322   22   22334456544    455566666666667788876432211            112111122


Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+.-.-..|-+.+|..++  +..|++-.+
T Consensus       154 asKaav~~ltr~lA~Ela--~~gIrVNaV  180 (247)
T 4hp8_A          154 AAKHGVAGLTKLLANEWA--AKGINVNAI  180 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            222223346677777776  555654444

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.25  E-value=0.0013  Score=58.30  Aligned_cols=150  Identities=15%  Similarity=0.071  Sum_probs=84.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hhc---
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NAL---   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~---~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a~---   86 (332)
                      +.+++.|+||+|.+|..++..|++   .|.  +|+++|+++  ......++........+..+. .-+|.+   +++   
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            345799999999999999999998   677  999999876  223333443211112333322 123321   111   


Q ss_pred             ------CCCc--EEEEcCCCCCCCC------CC---hhhhHhhhHHHHHHHHHHHHhhC-----CCcEEEEecCCCCchH
Q 020049           87 ------TGMD--LVIIPAGVPRKPG------MT---RDDLFNINAGIVRTLCEGIAKCC-----PNATVNLISNPVNSTV  144 (332)
Q Consensus        87 ------~~aD--iVi~~~g~~~~~g------~~---r~~~~~~n~~~~~~i~~~i~~~~-----p~a~viv~tNP~~~~t  144 (332)
                            ...|  ++|..||.....+      .+   ....+..|+.....+.+.+.++.     ..+.||++|.....  
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~--  160 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL--  160 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT--
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc--
Confidence                  1347  9999998743211      22   23345667777767776665543     23567777653321  


Q ss_pred             HHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          145 PIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       145 ~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                                .+.|..-.++.+......+.+.++..++
T Consensus       161 ----------~~~~~~~~Y~asKaa~~~~~~~la~e~~  188 (259)
T 1oaa_A          161 ----------QPYKGWGLYCAGKAARDMLYQVLAAEEP  188 (259)
T ss_dssp             ----------SCCTTCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ----------CCCCCccHHHHHHHHHHHHHHHHHhhCC
Confidence                      1223333344443334456677777764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.24  E-value=0.0016  Score=58.81  Aligned_cols=77  Identities=14%  Similarity=0.129  Sum_probs=52.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----Hh-------h
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----EN-------A   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----~~-------a   85 (332)
                      .++|.|+||+|.+|..++..|+..|.  .|++.|+++  ......++.... ...+..+. .-+|.    .+       .
T Consensus        12 ~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           12 RRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            45799999999999999999999998  999999986  233444555432 23344322 12232    11       2


Q ss_pred             cCCCcEEEEcCCCC
Q 020049           86 LTGMDLVIIPAGVP   99 (332)
Q Consensus        86 ~~~aDiVi~~~g~~   99 (332)
                      +...|++|++||..
T Consensus        89 ~g~iD~lv~nAg~~  102 (311)
T 3o26_A           89 FGKLDILVNNAGVA  102 (311)
T ss_dssp             HSSCCEEEECCCCC
T ss_pred             CCCCCEEEECCccc
Confidence            34799999999875

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.24  E-value=0.0072  Score=54.41  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            46799999999999999999999888  899999886

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.23  E-value=0.0011  Score=59.42  Aligned_cols=155  Identities=19%  Similarity=0.203  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|...   ......++....  ..+..+. .-+|.   ++++      
T Consensus        28 ~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           28 DRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIER  103 (269)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999998  899998854   223333344332  2233221 12332   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHH----HHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i----~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|..||......   .+.   ...+..|+.....+    .+.+.+. ..+.||++|.-..           . .
T Consensus       104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~  170 (269)
T 4dmm_A          104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQ-RSGRIINIASVVG-----------E-M  170 (269)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCCEEEEECCHHH-----------H-H
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECchhh-----------c-C
Confidence             37899999998754321   122   23345565554444    4444443 3456666654110           1 1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+..-.++.+......+.+.++..++  +..|++..+
T Consensus       171 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  206 (269)
T 4dmm_A          171 GNPGQANYSAAKAGVIGLTKTVAKELA--SRGITVNAV  206 (269)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            233333445444444456677777764  344544433

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.22  E-value=0.0025  Score=56.31  Aligned_cols=108  Identities=15%  Similarity=0.169  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCCHH---hhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLE---NALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~~---~a~~~aDiVi~~   95 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++  ....++   .   .+..+.. ..+.+   +.+...|++|.+
T Consensus        19 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~---~---~~~~~~D~~~~~~~~~~~~~~iD~lv~~   88 (249)
T 1o5i_A           19 DKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRS---G---HRYVVCDLRKDLDLLFEKVKEVDILVLN   88 (249)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHT---C---SEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhh---C---CeEEEeeHHHHHHHHHHHhcCCCEEEEC
Confidence            46899999999999999999999998  899999875  111222   1   1111111 12333   233489999999


Q ss_pred             CCCCCCCC---CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecC
Q 020049           96 AGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        96 ~g~~~~~g---~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ||......   .+.   ...+..|+..    .+.+.+.+.+.. .+.||++|.
T Consensus        89 Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           89 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            98653221   121   2233445443    455566665543 456676654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.22  E-value=0.00097  Score=59.50  Aligned_cols=147  Identities=14%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+...   ......++....  ..+..+. .-+|.   ++++      
T Consensus        26 ~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (267)
T 4iiu_A           26 SRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIAQ  101 (267)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  786655433   223333443332  2333222 12332   2223      


Q ss_pred             -CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                       ...|++|..||......   .+   ....+..|+.....+.    ..+.+..+.+.||++|.....            .
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~------------~  169 (267)
T 4iiu_A          102 HGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGV------------M  169 (267)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHH------------H
T ss_pred             hCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhc------------c
Confidence             37899999998754321   12   2234455655444444    444434566777777652210            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      +.+..-.++.+......+.+.++..+.
T Consensus       170 ~~~~~~~Y~asKaa~~~~~~~la~e~~  196 (267)
T 4iiu_A          170 GNRGQVNYSAAKAGIIGATKALAIELA  196 (267)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence            233333444444334456667777764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.21  E-value=0.0017  Score=57.37  Aligned_cols=117  Identities=15%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (332)
                      +.++|.|+||+|++|..++..|+..|.  +|+++|++.  ......++.... ...+..+. .-+|.   +++       
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999987  999999865  222233332110 12233221 11232   222       


Q ss_pred             cCCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 020049           86 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN  138 (332)
                      +...|+||.++|......   .+   ....+..|+.....+.+.+    .+....+.||++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            235899999998753221   12   1233455665555554444    33333466776654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.21  E-value=0.0028  Score=56.48  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL----   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~----   86 (332)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|...     .+....++...  ..++..+. .-+|.   ++.+    
T Consensus        11 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~   86 (262)
T 3ksu_A           11 NKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQ--GAKVALYQSDLSNEEEVAKLFDFAE   86 (262)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTT--TCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhc--CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            45799999999999999999999998  899987643     22233344433  23443322 12232   2222    


Q ss_pred             ---CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 ---TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ---~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                         ...|++|..||......   .+   ....+..|+.....+.+.+.++- +.+.||+++......         -   
T Consensus        87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~---------~---  154 (262)
T 3ksu_A           87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA---------Y---  154 (262)
T ss_dssp             HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH---------H---
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc---------C---
Confidence               37899999998754322   12   23345678877777777776553 356677776532111         1   


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.++..++  +..|++..+
T Consensus       155 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3ksu_A          155 TGFYSTYAGNKAPVEHYTRAASKELM--KQQISVNAI  189 (262)
T ss_dssp             HCCCCC-----CHHHHHHHHHHHHTT--TTTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            22233566665555567788888875  445554444

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.20  E-value=0.0014  Score=58.61  Aligned_cols=145  Identities=10%  Similarity=0.104  Sum_probs=80.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~-------   86 (332)
                      +.+.|+||+|.+|..++..|+..|.  .|++.|.+..   ......+....  .++..+. +-+|.   ++++       
T Consensus        26 k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           26 RVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4578999999999999999999998  8999996551   22223333322  2222221 12332   2222       


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|.+||......   .+.   ...+..|+.....+.+.    +.+. ..+.||++|....           . .+
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~-~~  168 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGSVNG-----------S-RG  168 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-HC
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCChhh-----------c-cC
Confidence            37899999998753221   222   23345565554444444    4333 3466777764211           1 12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhC
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                      .+..-.++.+......+.+.++..+.
T Consensus       169 ~~~~~~Y~asKaa~~~~~~~la~e~~  194 (269)
T 3gk3_A          169 AFGQANYASAKAGIHGFTKTLALETA  194 (269)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhh
Confidence            33333445444334456667777664

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.18  E-value=0.00083  Score=60.03  Aligned_cols=115  Identities=17%  Similarity=0.176  Sum_probs=71.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---HhhcC------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~~------   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.     ..+..+. +-+|.   +++++      
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999998  9999998752  11112121     2233221 12232   22233      


Q ss_pred             -CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCC
Q 020049           88 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN  141 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~  141 (332)
                       ..|++|.++|.....   ..+   ....+..|+.....+.+.+.++.. .+.||++|....
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence             469999999865321   112   233456787777777777665542 467777765443

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.15  E-value=0.0013  Score=58.06  Aligned_cols=148  Identities=16%  Similarity=0.155  Sum_probs=80.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhc-------CCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENAL-------TGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~-------~~a   89 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|+++|++...      ...  ....... .-+|   .++++       ...
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~--~~~~~~~-D~~d~~~~~~~~~~~~~~~g~i   75 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQY--PFATEVM-DVADAAQVAQVCQRLLAETERL   75 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCC--SSEEEEC-CTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcC--CceEEEc-CCCCHHHHHHHHHHHHHHcCCC
Confidence            35899999999999999999999998  89999987521      111  1111111 1122   22333       378


Q ss_pred             cEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHH----HHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           90 DLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        90 DiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~----~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      |++|.++|.....   ..+   ....+..|+.....+.    +.+.+.. .+.||++|.....            .+.|.
T Consensus        76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~------------~~~~~  142 (250)
T 2fwm_X           76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASDAAH------------TPRIG  142 (250)
T ss_dssp             CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT------------SCCTT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECchhhC------------CCCCC
Confidence            9999999875321   122   2233455655444444    4444443 4566666543211            11222


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.++..+.  +..|++.++
T Consensus       143 ~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  174 (250)
T 2fwm_X          143 MSAYGASKAALKSLALSVGLELA--GSGVRCNVV  174 (250)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHhC--ccCCEEEEE
Confidence            22334333333455666666653  344544443

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.13  E-value=0.0023  Score=57.84  Aligned_cols=114  Identities=18%  Similarity=0.064  Sum_probs=74.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCCH---HhhcC---CCcE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENALT---GMDL   91 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~~---~aDi   91 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|+++|+++....  ++.... ...+..+.. -+|.   +++++   ..|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGE--AAARTM-AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            346899999999999999999999998  9999998762221  122111 234443321 2332   23333   6699


Q ss_pred             EEEcCCCCCCCC----CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           92 VIIPAGVPRKPG----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        92 Vi~~~g~~~~~g----~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|++||......    ......+..|+.....+.+.+.++... .||++|.
T Consensus        90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            999999753221    223456678888888888888766543 5666654

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.11  E-value=0.0042  Score=55.52  Aligned_cols=152  Identities=20%  Similarity=0.298  Sum_probs=83.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------c
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  .|++.|+++.  .....++.     ..+..+. .-+|.   +++       +
T Consensus        27 gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (266)
T 3grp_A           27 GRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSIKQLAEVAEREM   99 (266)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  8999998762  22222221     2222221 12232   122       2


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|..||......   .+   ....+..|+..    .+.+.+.+.+. ..+.||++|......            +
T Consensus       100 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~Iv~isS~~~~~------------~  166 (266)
T 3grp_A          100 EGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRR-RYGRIINITSIVGVV------------G  166 (266)
T ss_dssp             TSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCC-----------------
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcEEEEECCHHHcC------------C
Confidence            47899999998753221   11   23344566666    55555655544 346677776543221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       167 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gI~vn~v  201 (266)
T 3grp_A          167 NPGQTNYCAAKAGLIGFSKALAQEIA--SRNITVNCI  201 (266)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            12222233333333456667777764  334544333

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.10  E-value=0.0071  Score=54.00  Aligned_cols=156  Identities=11%  Similarity=0.110  Sum_probs=91.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|++.|.  .|++.|+++  +...+.++....  .+...+. .-+|.          .+.+.
T Consensus        10 KvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D           10 KTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            4688889999999999999999998  999999987  333444555432  2222211 11221          12345


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||......   .+   ....+.-|+.    ..+..++.|.+....+.||+++.-....            +.
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~------------~~  153 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA------------AR  153 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------BC
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC------------CC
Confidence            7899999998754322   22   2233444544    4556666676555667888876433221            12


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      |..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       154 ~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~  188 (255)
T 4g81_D          154 PTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQTNAIG  188 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            2222233332223446677887776  5556554443

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.10  E-value=0.00045  Score=61.03  Aligned_cols=148  Identities=14%  Similarity=0.127  Sum_probs=79.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh-------cCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-------LTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------~~~a   89 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|+++....  ++.      .+..  .-+|   .+++       +...
T Consensus        15 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~------~~~~--D~~~~~~~~~~~~~~~~~~g~i   82 (247)
T 1uzm_A           15 SRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPK--GLF------GVEV--DVTDSDAVDRAFTAVEEHQGPV   82 (247)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCT--TSE------EEEC--CTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHH--Hhc------Ceec--cCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999997  8999998751100  000      0110  1112   1222       2367


Q ss_pred             cEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           90 DLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        90 DiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      |++|..+|.....   ..+   ....+..|+.....+.+.+.++   ...+.||++|......            +.|..
T Consensus        83 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~------------~~~~~  150 (247)
T 1uzm_A           83 EVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW------------GIGNQ  150 (247)
T ss_dssp             SEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----------------CC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhcc------------CCCCC
Confidence            9999999875321   122   2334455655555555444332   2346677776544322            11222


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      -.++.+......+.+.+++.++  +..|++.++
T Consensus       151 ~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  181 (247)
T 1uzm_A          151 ANYAASKAGVIGMARSIARELS--KANVTANVV  181 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            2333333333445666676664  334544443

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.10  E-value=0.0063  Score=53.83  Aligned_cols=157  Identities=12%  Similarity=0.059  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (332)
                      ++++.|+||+|.+|..++..|+..|.  +|++++.+..  .....++.... ..++..+. .-+|   .++++       
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999998  8999987652  12222222111 12333322 1223   22233       


Q ss_pred             CCCcEEEEcCCC--CCCC---CCCh---hhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCC-CCchHHHHHHHHHH
Q 020049           87 TGMDLVIIPAGV--PRKP---GMTR---DDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP-VNSTVPIAAEVFKK  153 (332)
Q Consensus        87 ~~aDiVi~~~g~--~~~~---g~~r---~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~  153 (332)
                      ...|++|.+||.  ....   ..+.   ...+..|+.....+.+.    +.+. ..+.||+++.. ...           
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~-----------  151 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQ-NFGRIINYGFQGADS-----------  151 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTTGGG-----------
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhc-CCCeEEEEeechhcc-----------
Confidence            378999999983  2111   1122   23345565554444444    4544 34666766543 210           


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ..+++..-.++.+......+.+.++..+.  +..|++..+
T Consensus       152 ~~~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (264)
T 3i4f_A          152 APGWIYRSAFAAAKVGLVSLTKTVAYEEA--EYGITANMV  189 (264)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cCCCCCCchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            12233333444443334456666776654  334544333

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.09  E-value=0.0015  Score=58.21  Aligned_cols=149  Identities=17%  Similarity=0.134  Sum_probs=81.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhc-------CCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~~a   89 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++....     .    ...+..+. .-+|   .++++       ...
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   97 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPS-----A----DPDIHTVAGDISKPETADRIVREGIERFGRI   97 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCC-----S----STTEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhc-----c----cCceEEEEccCCCHHHHHHHHHHHHHHCCCC
Confidence            5799999999999999999999998  999999875210     0    01122211 1122   22222       389


Q ss_pred             cEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      |++|.+||......   .+   ....+..|+.....+.+.    +.+. ..+.||+++......          ....++
T Consensus        98 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~----------~~~~~~  166 (260)
T 3un1_A           98 DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQ-GSGHIVSITTSLVDQ----------PMVGMP  166 (260)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCTTTTS----------CBTTCC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEEechhhcc----------CCCCCc
Confidence            99999998754221   12   223345566555555444    4433 345666665422110          000111


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.+|..++  +..|++.++
T Consensus       167 ~~~Y~~sKaa~~~l~~~la~e~~--~~gI~vn~v  198 (260)
T 3un1_A          167 SALASLTKGGLNAVTRSLAMEFS--RSGVRVNAV  198 (260)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEE
Confidence            12233333334456677777764  445544443

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.08  E-value=0.0014  Score=58.18  Aligned_cols=110  Identities=17%  Similarity=0.163  Sum_probs=66.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh-------cCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-------LTG   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------~~~   88 (332)
                      +.++|.|+||+|.+|..++..|+..|.  +|++.|++....     ..    ...... .-+|   .+++       +..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~----~~~~~~-Dl~d~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPP-----EG----FLAVKC-DITDTEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCC-----TT----SEEEEC-CTTSHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhh-----cc----ceEEEe-cCCCHHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999998  899999875210     00    111100 1122   1222       235


Q ss_pred             CcEEEEcCCCCCCC------CCChhhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecCCCC
Q 020049           89 MDLVIIPAGVPRKP------GMTRDDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        89 aDiVi~~~g~~~~~------g~~r~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tNP~~  141 (332)
                      .|++|..+|.....      .......+..|+.....+.+    .+.+. ..+.||++|....
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~  149 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVG  149 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhh
Confidence            69999999875321      12234455667665555554    44333 3566777765443

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.03  E-value=0.022  Score=50.54  Aligned_cols=152  Identities=16%  Similarity=0.147  Sum_probs=85.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL----------ENALTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~~   88 (332)
                      +++|.|+||++.+|..+|..|+..|.  +|++.|+++..  ..++....  ..+..+. .-+|.          .+.+..
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~   75 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQR   75 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            35799999999999999999999998  99999997621  22233222  1222211 11221          234568


Q ss_pred             CcEEEEcCCCCCCCC---CC---hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      -|++|..||......   .+   ....+.-|+...    +...+.+.+.  .+.||+++.-....            +.|
T Consensus        76 iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~~~~~------------~~~  141 (247)
T 3ged_A           76 IDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAFQ------------SEP  141 (247)
T ss_dssp             CCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGTS------------CCT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeeccccc------------CCC
Confidence            899999998754321   22   223344555444    4445555443  46677765422111            222


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      ..-.++.+.-.-..|.+.+|..++  | .|++-.+-
T Consensus       142 ~~~~Y~asKaal~~ltk~lA~ela--~-~IrVN~I~  174 (247)
T 3ged_A          142 DSEAYASAKGGIVALTHALAMSLG--P-DVLVNCIA  174 (247)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHT--T-TSEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEEe
Confidence            222233332233456788888887  4 57544443

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.02  E-value=0.0081  Score=53.57  Aligned_cols=156  Identities=14%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~   86 (332)
                      .+.+.|+||++.+|..+|..|+..|.  .|+++|+++  ++..+.++....  .++..+. +-+|.          .+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35688999999999999999999998  999999987  344455565432  2222221 11232          2335


Q ss_pred             CCCcEEEEcCCCCC--CC--CCCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~--~~--g~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      -.-|++|..||...  .+  ..+.   ...+..|+    ...+..++.|.+.. .+.||+++.-....            
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~------------  149 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR------------  149 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC------------
Confidence            67899999998642  22  1222   22334454    45566666666554 56777775432211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      +.|..-.++.+.-....|.+.+|..++  |..|++-.+-
T Consensus       150 ~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V~  186 (254)
T 4fn4_A          150 GGFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRAVAVL  186 (254)
T ss_dssp             SSSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEE
Confidence            122211233332223446677787776  5566554443

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.01  E-value=0.0068  Score=54.02  Aligned_cols=114  Identities=15%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-ccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhhc-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++. +.++  .+....++....  ..+..+.. -+|   .++++       
T Consensus        27 k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            4699999999999999999999998  88776 4443  222333343322  33333221 123   22222       


Q ss_pred             CCCcEEEEcCCCCCCCC----CCh---hhhHhhhHHHHHHH----HHHHHhh--CCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTL----CEGIAKC--CPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~~~~~i----~~~i~~~--~p~a~viv~tN  138 (332)
                      ...|++|.+||.....+    .+.   ...+..|+.....+    .+.+.+.  ...+.||++|.
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence            37799999998754322    122   23345565544444    4444432  23566777765

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.00  E-value=0.0006  Score=59.43  Aligned_cols=94  Identities=15%  Similarity=0.108  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhcC------CCcE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENALT------GMDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~------~aDi   91 (332)
                      ++|.|+||+|.+|..++..|++.|.  +|+++|+++.      ...    ...... .-+|   +.++++      ..|+
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~------~~~----~~~~~~-D~~~~~~~~~~~~~~~~~~~~d~   69 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE------GED----LIYVEG-DVTREEDVRRAVARAQEEAPLFA   69 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC------SSS----SEEEEC-CTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc------ccc----eEEEeC-CCCCHHHHHHHHHHHHhhCCceE
Confidence            5899999999999999999999888  8999998752      000    011110 1122   233343      7899


Q ss_pred             EEEcCCCCCCCC---C-------ChhhhHhhhHHHHHHHHHHHHhh
Q 020049           92 VIIPAGVPRKPG---M-------TRDDLFNINAGIVRTLCEGIAKC  127 (332)
Q Consensus        92 Vi~~~g~~~~~g---~-------~r~~~~~~n~~~~~~i~~~i~~~  127 (332)
                      +|.++|......   .       .....+..|+.....+.+.+.+.
T Consensus        70 li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  115 (242)
T 1uay_A           70 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWA  115 (242)
T ss_dssp             EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999998653221   1       12334556766666666555443

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.99  E-value=0.0082  Score=53.00  Aligned_cols=151  Identities=13%  Similarity=0.097  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhh-------cC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (332)
                      +++.|+||+|.+|..++..|+..|....|++.++++  ......++.     ..+..+. .-+|.   ++.       +.
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            479999999999999999998876444889998876  222222221     1222221 11232   222       23


Q ss_pred             CCcEEEEcCCCCCC--C--CCCh---hhhHhhhHHHHHH----HHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~--~--g~~r---~~~~~~n~~~~~~----i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..|++|+.||....  +  ..+.   ...+..|+.....    +.+.+.+..  +.||++|......            +
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~------------~  143 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNM------------Y  143 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCC------------S
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhcc------------C
Confidence            78999999987422  1  1222   2234455544444    444445543  6677776543322            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+......+.+.++..+    ..|++..+-
T Consensus       144 ~~~~~~Y~asK~a~~~~~~~la~e~----~~i~vn~v~  177 (254)
T 3kzv_A          144 FSSWGAYGSSKAALNHFAMTLANEE----RQVKAIAVA  177 (254)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHC----TTSEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhhc----cCcEEEEEe
Confidence            2222234443333445666777665    345544443

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.99  E-value=0.0013  Score=59.37  Aligned_cols=155  Identities=16%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EccCCcHHHHHHHhcCC-CCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L-~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      |+.++++||+|+||+|.||+.++..+...+-. +|+- +|.+.....-.|..... ....+.   .+.|+++.++++|+|
T Consensus         2 ~~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~---v~~dl~~ll~~~DVV   77 (272)
T 4f3y_A            2 PGSMSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVA---LTDDIERVCAEADYL   77 (272)
T ss_dssp             ----CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCB---CBCCHHHHHHHCSEE
T ss_pred             CCCccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCce---ecCCHHHHhcCCCEE
Confidence            45566789999997799999999988776533 5554 78764111111121111 111222   245788888999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee-hhh--
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLD--  169 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~-~ld--  169 (332)
                      |....                -....+.++.+.++..+  +++.|..  ..-... +.+..+..- ..-+++.. .+.  
T Consensus        78 IDfT~----------------p~a~~~~~~~al~~G~~--vVigTTG--~s~~~~-~~L~~aa~~-~~vv~a~N~s~Gv~  135 (272)
T 4f3y_A           78 IDFTL----------------PEGTLVHLDAALRHDVK--LVIGTTG--FSEPQK-AQLRAAGEK-IALVFSANMSVGVN  135 (272)
T ss_dssp             EECSC----------------HHHHHHHHHHHHHHTCE--EEECCCC--CCHHHH-HHHHHHTTT-SEEEECSCCCHHHH
T ss_pred             EEcCC----------------HHHHHHHHHHHHHcCCC--EEEECCC--CCHHHH-HHHHHHhcc-CCEEEECCCCHHHH
Confidence            98631                22333444444545432  2333321  111111 122333211 01133221 111  


Q ss_pred             -HHHHHHHHHHHhCCCCCCCceeEEEecCC
Q 020049          170 -VVRANTFVAEVLGLDPRDVDVPVVGGHAG  198 (332)
Q Consensus       170 -~~r~~~~la~~l~v~~~~v~~~v~G~hg~  198 (332)
                       -.++....|+.|+   .+.+.-|+=-|+.
T Consensus       136 l~~~~~~~aa~~l~---~~~diei~E~HH~  162 (272)
T 4f3y_A          136 VTMKLLEFAAKQFA---QGYDIEIIEAHHR  162 (272)
T ss_dssp             HHHHHHHHHHHHTS---SSCEEEEEEEECT
T ss_pred             HHHHHHHHHHHhcC---cCCCEEEEEecCC
Confidence             2456677778876   4567888888886

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.98  E-value=0.0061  Score=54.55  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +++.|+||+|.+|..++..|++.|.  +|++.|++.
T Consensus        31 k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           31 ASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            4699999999999999999999998  899999876

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.97  E-value=0.00056  Score=60.19  Aligned_cols=147  Identities=13%  Similarity=0.140  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC-----C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENALT-----G   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----~   88 (332)
                      .+++.|+||+|.+|..++..|+. .+.  .|++.|+++. ..           ..+..+. .-+|   .+++++     .
T Consensus         4 ~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~   70 (244)
T 4e4y_A            4 MANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSA-----------ENLKFIKADLTKQQDITNVLDIIKNVS   70 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCC-----------TTEEEEECCTTCHHHHHHHHHHTTTCC
T ss_pred             CCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEecccccccc-----------ccceEEecCcCCHHHHHHHHHHHHhCC
Confidence            45799999999999999999988 666  8899998752 10           0111111 1112   222222     7


Q ss_pred             CcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           89 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        89 aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      .|++|+.||.....   ..+   ....+..|+.....+.+.+.++-. .+.||+++......            +.|..-
T Consensus        71 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------~~~~~~  138 (244)
T 4e4y_A           71 FDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI------------AKPNSF  138 (244)
T ss_dssp             EEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC------------CCTTBH
T ss_pred             CCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc------------CCCCCc
Confidence            89999999875321   122   233456788888788877766542 35666665432211            223222


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .++.+......+.+.++..++  +..|++..+
T Consensus       139 ~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  168 (244)
T 4e4y_A          139 AYTLSKGAIAQMTKSLALDLA--KYQIRVNTV  168 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            344443334456677777664  344544443

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.97  E-value=0.0022  Score=57.45  Aligned_cols=147  Identities=9%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH---Hh-------hcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-------ALTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~-------a~~~a   89 (332)
                      .++|.|+||+|.+|..++..|+..|.  +|+++|+++...     .. . ...+..  .-+|.   .+       .+...
T Consensus        14 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~-~-~~~~~~--Dv~~~~~v~~~~~~~~~~~g~i   82 (269)
T 3vtz_A           14 DKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSD-----VN-V-SDHFKI--DVTNEEEVKEAVEKTTKKYGRI   82 (269)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--C-----TT-S-SEEEEC--CTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhc-----cC-c-eeEEEe--cCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999998  899999876211     00 0 011110  11221   12       23478


Q ss_pred             cEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           90 DLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        90 DiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      |++|.+||......   .+.   ...+..|+.....+.+    .+.+. ..+.||++|......            +.+.
T Consensus        83 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~------------~~~~  149 (269)
T 3vtz_A           83 DILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAI-GHGSIINIASVQSYA------------ATKN  149 (269)
T ss_dssp             CEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------BCTT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhhcc------------CCCC
Confidence            99999998753221   121   2234456555444444    44433 356677765432211            1222


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.++..++  + .|++..+
T Consensus       150 ~~~Y~asKaa~~~l~~~la~e~~--~-~i~vn~v  180 (269)
T 3vtz_A          150 AAAYVTSKHALLGLTRSVAIDYA--P-KIRCNAV  180 (269)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--T-TEEEEEE
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhc--C-CCEEEEE
Confidence            22344443344556777777775  3 4544444

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.96  E-value=0.0013  Score=57.06  Aligned_cols=142  Identities=17%  Similarity=0.200  Sum_probs=85.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++..    .|+.+..   .+.      ..-+.+...|++|+++|...
T Consensus         7 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~~~   71 (223)
T 3uce_A            7 TVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGSYA   71 (223)
T ss_dssp             EEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCCCC
Confidence            4789999999999999999999888  8999987642    1221110   000      11223457899999998652


Q ss_pred             CC----CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHH
Q 020049          101 KP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  172 (332)
Q Consensus       101 ~~----g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r  172 (332)
                      ..    ..+   ....+..|+.....+.+.+.++- +.+.|+++|.....            .+.|..-.++.+......
T Consensus        72 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~------------~~~~~~~~Y~asK~a~~~  139 (223)
T 3uce_A           72 PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR------------KVVANTYVKAAINAAIEA  139 (223)
T ss_dssp             CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT------------SCCTTCHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc------------cCCCCchHHHHHHHHHHH
Confidence            22    122   23345678888878887776654 34567777643211            122322234444333445


Q ss_pred             HHHHHHHHhCCCCCCCceeEE
Q 020049          173 ANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.+.+++.++  +  |++..+
T Consensus       140 ~~~~la~e~~--~--i~vn~v  156 (223)
T 3uce_A          140 TTKVLAKELA--P--IRVNAI  156 (223)
T ss_dssp             HHHHHHHHHT--T--SEEEEE
T ss_pred             HHHHHHHhhc--C--cEEEEE
Confidence            6677777775  2  554444

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.94  E-value=0.0065  Score=55.88  Aligned_cols=157  Identities=13%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC---------C--cHHHHHHHhcCCCCCeEEEEeCCCCHHh----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV---------N--TPGVTADISHMDTGAVVRGFLGQPQLEN----   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~---------~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~----   84 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|..         .  ......++..... ..+.......+.++    
T Consensus         9 gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~-~~~~D~~~~~~~~~~~~~   85 (319)
T 1gz6_A            9 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKT   85 (319)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhCC-eEEEeCCCHHHHHHHHHH
Confidence            35799999999999999999999998  89998863         2  2223334433221 11111211112112    


Q ss_pred             ---hcCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHH----HHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 020049           85 ---ALTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        85 ---a~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~----~i~~~~p~a~viv~tNP~~~~t~~~~~~~  151 (332)
                         .+...|++|+.||......   .+.   ...+..|+.....+.+    .+++. ..+.||++|....          
T Consensus        86 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~grIV~vsS~~~----------  154 (319)
T 1gz6_A           86 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQ-NYGRIIMTASASG----------  154 (319)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH----------
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEECChhh----------
Confidence               2347899999999754321   222   2334556665444444    44443 3466777654211          


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                       .. +.+..-.++.+......+.+.++..+.  +..|++..+.
T Consensus       155 -~~-~~~~~~~Y~aSK~a~~~~~~~la~el~--~~gI~vn~v~  193 (319)
T 1gz6_A          155 -IY-GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTIA  193 (319)
T ss_dssp             -HH-CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             -cc-CCCCCHHHHHHHHHHHHHHHHHHHHhc--ccCEEEEEEe
Confidence             11 122223344444444456667777653  3445544443

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.93  E-value=0.0071  Score=55.52  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=86.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC----------C--cHHHHHHHhcCCCCCeEEEEe-CCCCH---Hh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV----------N--TPGVTADISHMDTGAVVRGFL-GQPQL---EN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~----------~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~   84 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|++.|++          .  ......++....  ..+..+. .-+|.   .+
T Consensus        28 k~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           28 RVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHH
Confidence            4689999999999999999999998  99999986          3  233344454332  2333322 12332   12


Q ss_pred             hc-------CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC---------CCcEEEEecCCCCc
Q 020049           85 AL-------TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC---------PNATVNLISNPVNS  142 (332)
Q Consensus        85 a~-------~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~---------p~a~viv~tNP~~~  142 (332)
                      .+       ...|++|.+||......   .+   ....+..|+.....+.+.+..+.         +.+.||++|.....
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~  183 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGL  183 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHc
Confidence            22       27899999998754321   12   22345567665544444433221         13677777642110


Q ss_pred             hHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          143 TVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       143 ~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                                  .+.+..-.++.+......+.+.+|..++  +..|++..+
T Consensus       184 ------------~~~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  220 (322)
T 3qlj_A          184 ------------QGSVGQGNYSAAKAGIATLTLVGAAEMG--RYGVTVNAI  220 (322)
T ss_dssp             ------------HCBTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ------------cCCCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEEEEe
Confidence                        1122223344443334456677777764  334543333

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=96.93  E-value=0.0053  Score=53.91  Aligned_cols=156  Identities=17%  Similarity=0.156  Sum_probs=87.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEc-cCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hhcC-----
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NALT-----   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D-~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a~~-----   87 (332)
                      .+++.|+||+|.+|..++..|+..|.  .|++.+ .+.  ......++....  ..+..+. .-+|.+   ..++     
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999998  888764 443  233334444332  2333221 112321   1111     


Q ss_pred             --------CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHH
Q 020049           88 --------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        88 --------~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                              ..|++|..||......   .+.   ...+..|+.....+.+.+.++- +.+.||++|......         
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~---------  153 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI---------  153 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS---------
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc---------
Confidence                    2899999998753221   121   2345567777777777766543 345777776543221         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         +.|..-.++.+......+.+.++..++  +..|++..+
T Consensus       154 ---~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (255)
T 3icc_A          154 ---SLPDFIAYSMTKGAINTMTFTLAKQLG--ARGITVNAI  189 (255)
T ss_dssp             ---CCTTBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ---CCCCcchhHHhHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence               233333344443334456667777764  334544333

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.92  E-value=0.0017  Score=58.51  Aligned_cols=151  Identities=21%  Similarity=0.193  Sum_probs=82.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hh-------hc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~   86 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..  .....++     ...+..+. .-+|.   ++       .+
T Consensus         5 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (281)
T 3zv4_A            5 GEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLRELEVAH-----GGNAVGVVGDVRSLQDQKRAAERCLAAF   77 (281)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT-----BTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHc-----CCcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999998  9999998752  2222211     12222221 11232   12       23


Q ss_pred             CCCcEEEEcCCCCCCCC-------CC----hhhhHhhhHHHH----HHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPRKPG-------MT----RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  151 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g-------~~----r~~~~~~n~~~~----~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~  151 (332)
                      ...|++|+.||.....+       ..    ....+..|+...    +.+.+.+.+.  .+.||+++.-....        
T Consensus        78 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------  147 (281)
T 3zv4_A           78 GKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS--RGSVVFTISNAGFY--------  147 (281)
T ss_dssp             SCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTS--------
T ss_pred             CCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCeEEEEecchhcc--------
Confidence            46799999998643211       11    122334555444    4444444433  35566665422111        


Q ss_pred             HHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       152 ~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                          +.+..-.++.+......+.+.+|..++  +. |++..+.
T Consensus       148 ----~~~~~~~Y~asKaa~~~l~~~la~e~~--~~-Irvn~v~  183 (281)
T 3zv4_A          148 ----PNGGGPLYTATKHAVVGLVRQMAFELA--PH-VRVNGVA  183 (281)
T ss_dssp             ----SSSSCHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             ----CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-CEEEEEE
Confidence                122222344443334456777888876  33 6555443

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.89  E-value=0.0087  Score=53.52  Aligned_cols=158  Identities=16%  Similarity=0.189  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---------HHHHHHHhcCCCCCeEEEEe-CCCCHH---hh-
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---------PGVTADISHMDTGAVVRGFL-GQPQLE---NA-   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++..         .....++...  ..++..+. .-+|.+   +. 
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAA--GGQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHH--TSEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHH
Confidence            45799999999999999999999998  8999998751         1222333222  12333222 122321   22 


Q ss_pred             ------cCCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh---CCCcEEEEecCCCCchHHHHHHH
Q 020049           86 ------LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV  150 (332)
Q Consensus        86 ------~~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~---~p~a~viv~tNP~~~~t~~~~~~  150 (332)
                            +...|++|++||......   .+   ....+..|+.....+.+.+..+   .+.+.||+++.........    
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~----  157 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAW----  157 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHH----
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCC----
Confidence                  247899999998753221   22   1234456666555555554332   2456777777655544210    


Q ss_pred             HHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       151 ~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                            ++..-.++.+......+.+.++..++  +..|++..+
T Consensus       158 ------~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  192 (274)
T 3e03_A          158 ------WGAHTGYTLAKMGMSLVTLGLAAEFG--PQGVAINAL  192 (274)
T ss_dssp             ------HHHCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ------CCCCchHHHHHHHHHHHHHHHHHHhh--hcCEEEEEE
Confidence                  00011233333333456667777764  444544444

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=96.89  E-value=0.00093  Score=62.18  Aligned_cols=61  Identities=16%  Similarity=0.288  Sum_probs=47.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|+.+|..+...|.  +|..+|++....      . .  .  ..   ..++++.+++||+|+++.
T Consensus       163 ~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~------~-g--~--~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          163 SGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPN------T-N--Y--TY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTT------C-C--S--EE---ESCHHHHHHTCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhc------c-C--c--ee---cCCHHHHHhcCCEEEEec
Confidence            3478999999 9999999999988777  899999875211      0 1  1  21   236788899999999985

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.93  E-value=0.00015  Score=62.52  Aligned_cols=65  Identities=14%  Similarity=0.135  Sum_probs=46.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+.|||+|||+ |.+|+.++..|...++  +|.++|+++.   ...+...    .+..   . +..++++++|+||++.
T Consensus        17 ~~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           17 EKQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            45579999999 9999999999988887  8899987642   1112111    1121   2 4467789999999985

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.88  E-value=0.0035  Score=58.38  Aligned_cols=60  Identities=15%  Similarity=0.228  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|..+|++...       ..    ....   ..++++.+++||+|+++.
T Consensus       171 gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~-------~~----~~~~---~~sl~ell~~aDvVil~v  230 (340)
T 4dgs_A          171 GKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLS-------GV----DWIA---HQSPVDLARDSDVLAVCV  230 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCT-------TS----CCEE---CSSHHHHHHTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCccc-------cc----Ccee---cCCHHHHHhcCCEEEEeC
Confidence            479999999 9999999999987777  99999987522       00    1121   246789999999999984

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.88  E-value=0.0016  Score=60.55  Aligned_cols=65  Identities=26%  Similarity=0.417  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|++.......++   .    +. .   .++++.+++||+|+++..
T Consensus       149 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          149 YGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AE-F---KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----cc-c---CCHHHHHhhCCEEEECCC
Confidence            4579999999 9999999999988887  99999997643222221   1    12 1   257788999999999864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.87  E-value=0.029  Score=49.63  Aligned_cols=158  Identities=12%  Similarity=0.132  Sum_probs=86.5

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hh
Q 020049           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------EN   84 (332)
Q Consensus        20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~   84 (332)
                      .+.+.|+||+|  .+|..+|..|++.|.  +|++.|+++  .+.....+.+.. ......+. +-+|.          .+
T Consensus         6 gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            6 NKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQLN-QPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             TCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGGT-CSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC-CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            35788999866  699999999999998  999999987  222333333322 12222211 11232          13


Q ss_pred             hcCCCcEEEEcCCCCCCC-------CCChhhh---HhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHH
Q 020049           85 ALTGMDLVIIPAGVPRKP-------GMTRDDL---FNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~-------g~~r~~~---~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                      .+-..|++|..+|.....       ..+..++   +.-|.......+.....+.+ .+.||+++.-....          
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~----------  152 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEF----------  152 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTS----------
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccccc----------
Confidence            356799999998864321       1222222   23344445555555555543 56777775422211          


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                        +.|..-.++.+.-.-..|.+.+|..++  |..|++-.+-
T Consensus       153 --~~~~~~~Y~asKaal~~ltr~lA~Ela--~~gIrVN~V~  189 (256)
T 4fs3_A          153 --AVQNYNVMGVAKASLEANVKYLALDLG--PDNIRVNAIS  189 (256)
T ss_dssp             --CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             --CcccchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence              122222233332223446677777775  5566555443

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.87  E-value=0.0072  Score=53.99  Aligned_cols=112  Identities=20%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------   86 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|+++.  .....++.      .+..+. .-+|.   ++++      
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~Dv~d~~~v~~~~~~~~~~   79 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELP------GAVFILCDVTQEDDVKTLVSETIRR   79 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCT------TEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc------CCeEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999998  8999998752  22222221      122111 12232   2222      


Q ss_pred             -CCCcEEEEcCCCCCCCC----CC---hhhhHhhhHHHHHHHHHHHHhhC--CCcEEEEecC
Q 020049           87 -TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~g----~~---r~~~~~~n~~~~~~i~~~i~~~~--p~a~viv~tN  138 (332)
                       ...|++|+++|.....+    .+   ....+..|+.....+.+.+.++.  ..+.||++|.
T Consensus        80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  141 (270)
T 1yde_A           80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISS  141 (270)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence             37899999998753211    12   12344556655555544443221  1356676654

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.86  E-value=0.00044  Score=62.03  Aligned_cols=153  Identities=18%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHh-cCCC-C-CeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~-~~~~-~-~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++..... .+.. .... . ..+...  -....+.+...|++|..||
T Consensus        29 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~-~~~~~~~Dv~~~~~~~~~--~~~~~~~~g~iD~lvnnAg  103 (266)
T 3uxy_A           29 KVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIA-ADLHLPGDLREAAYADGL--PGAVAAGLGRLDIVVNNAG  103 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSC-CSEECCCCTTSHHHHHHH--HHHHHHHHSCCCEEEECCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-hhhccCcCCCCHHHHHHH--HHHHHHhcCCCCEEEECCC
Confidence            5799999999999999999999998  9999998751100 0000 0000 0 000000  0011233458999999998


Q ss_pred             CCCCCC---CC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeeh
Q 020049           98 VPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (332)
Q Consensus        98 ~~~~~g---~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~  167 (332)
                      ......   .+   ....+..|+.....+.+.+    .+. ..+.||++|......            +.|..-.++.+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~------------~~~~~~~Y~asK  170 (266)
T 3uxy_A          104 VISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAA-GGGAIVNVASCWGLR------------PGPGHALYCLTK  170 (266)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTB------------CCTTBHHHHHHH
T ss_pred             CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECCHHhCC------------CCCCChHHHHHH
Confidence            754221   12   2233445655555554444    444 356677776543221            223223344443


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          168 LDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .....+.+.++..++  +..|++..+
T Consensus       171 aa~~~l~~~la~e~~--~~gI~vn~v  194 (266)
T 3uxy_A          171 AALASLTQCMGMDHA--PQGIRINAV  194 (266)
T ss_dssp             HHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            334456667777764  334544433

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.84  E-value=0.0025  Score=57.62  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=89.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCH----------HhhcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~~~   88 (332)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++....  ..+.  ..-+|.          .+.+-.
T Consensus        30 KvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~g~~~--~~~~--~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           30 KIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEIGGGA--VGIQ--ADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCTTC--EEEE--CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCCe--EEEE--ecCCCHHHHHHHHHHHHHHcCC
Confidence            3578889999999999999999998  999999986  334444443211  1111  111221          233457


Q ss_pred             CcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           89 MDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        89 aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      -|++|..||.....   ..+   ....+.-|+.....+++...++- ..+.||+++.-...            .+.|..-
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~------------~~~~~~~  171 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS------------TGTPAFS  171 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG------------SCCTTCH
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc------------cCCCCch
Confidence            89999999864322   122   33445667776666666655443 24566666532211            1233222


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .++.+.-.-..|-+.+|..++  +..|++-.+-
T Consensus       172 ~Y~asKaav~~ltr~lA~Ela--~~gIrVN~V~  202 (273)
T 4fgs_A          172 VYAASKAALRSFARNWILDLK--DRGIRINTLS  202 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--TSCEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            334333233456778888876  6666555444

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.83  E-value=0.00025  Score=64.05  Aligned_cols=64  Identities=11%  Similarity=0.153  Sum_probs=37.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei-~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +|||+|||+ |.+|+.++..|... +  +| .++|+++...  ..+.... ..   .   .++++++++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~--~~~~~~~-g~---~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRA--RNLAEVY-GG---K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHH--HHHHHHT-CC---C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHH--HHHHHHc-CC---c---cCCHHHHHhcCCEEEEeC
Confidence            468999999 99999999988766 5  78 5899875221  1121111 11   1   234556788999999985

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.82  E-value=0.0054  Score=61.66  Aligned_cols=126  Identities=14%  Similarity=0.189  Sum_probs=62.2

Q ss_pred             hhhhhccCCCC---CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc---------CC--cHHHHHHHhcCCCCCeEE
Q 020049            9 QAKCRAKGGAA---GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV---------VN--TPGVTADISHMDTGAVVR   74 (332)
Q Consensus         9 ~~~~~~~~~~~---~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~---------~~--~~~~~~dl~~~~~~~~v~   74 (332)
                      +++|.++....   .+.+.|+||+|.+|..+|..|+..|.  .|++.|+         +.  ....+.++..... ..+.
T Consensus         5 ~~~~~~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~   81 (613)
T 3oml_A            5 HHHMSSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGA--KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVA   81 (613)
T ss_dssp             ----------CCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEC--------------CHHHHHHHHHHTTC-CEEE
T ss_pred             cccccCcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEE
Confidence            34455544433   34688999999999999999999998  9999987         32  2333344443321 1111


Q ss_pred             EEeCCCCHHhhc-------CCCcEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHH----HhhCCCcEEEEec
Q 020049           75 GFLGQPQLENAL-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS  137 (332)
Q Consensus        75 ~~~~~~d~~~a~-------~~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~t  137 (332)
                      ......+.++.+       ...|++|..||.....   ..+.   ...+..|+.....+.+.+    .+. ..+.||++|
T Consensus        82 D~~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~-~~g~IV~is  160 (613)
T 3oml_A           82 DYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQ-NYGRIIMTS  160 (613)
T ss_dssp             CCCCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             EeCCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCEEEEEC
Confidence            111111222333       3679999999975432   2222   233455665555444444    433 346677765


Q ss_pred             C
Q 020049          138 N  138 (332)
Q Consensus       138 N  138 (332)
                      .
T Consensus       161 S  161 (613)
T 3oml_A          161 S  161 (613)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.78  E-value=0.0037  Score=56.58  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcC-CCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +.+++.|+||+|.+|..++..|+..|.  +|+++|++.  .+..+.++... ......-......+.+++++++|+||.+
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            446899999779999999999999987  799999875  22333334221 1111111111112345678899999999


Q ss_pred             CCCC
Q 020049           96 AGVP   99 (332)
Q Consensus        96 ~g~~   99 (332)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            8753

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.77  E-value=0.00078  Score=63.31  Aligned_cols=70  Identities=26%  Similarity=0.305  Sum_probs=45.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +|||+|+|| |+||+.++..|... +  +|.+.|++...  ...+.+..  ..+.. ......+.+.++++|+||.+.+
T Consensus        16 ~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~--~~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           16 HMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNEN--LEKVKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHH--HHHHTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             ccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHH--HHHHhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            589999999 99999999888653 4  89999987521  11222211  22221 1111235677899999999863

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.75  E-value=0.023  Score=50.72  Aligned_cols=155  Identities=15%  Similarity=0.082  Sum_probs=86.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCH----------HhhcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~~~   88 (332)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++ ....+..+............ .-+|.          .+.+-.
T Consensus         7 gKvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~-Dv~~~~~v~~~v~~~~~~~G~   83 (258)
T 4gkb_A            7 DKVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQPRATYLPV-ELQDDAQCRDAVAQTIATFGR   83 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCTTCEEEEC-CTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCCCEEEEEe-ecCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999998  899999987 22222223222111111111 11221          233567


Q ss_pred             CcEEEEcCCCCCCCC--CChh---hhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           89 MDLVIIPAGVPRKPG--MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        89 aDiVi~~~g~~~~~g--~~r~---~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      -|++|..||......  .+..   ..+..|+.    ..+...+.|++.  .+.||+++.-...            .+.|.
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~------------~~~~~  149 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISSKTAV------------TGQGN  149 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTHHH------------HCCSS
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEeehhhc------------cCCCC
Confidence            899999999754332  2222   22344543    445555666543  3667777542211            12332


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       150 ~~~Y~asKaav~~ltr~lA~ela--~~gIrVN~V  181 (258)
T 4gkb_A          150 TSGYCASKGAQLALTREWAVALR--EHGVRVNAV  181 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            22334333233456777888776  555654444

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.72  E-value=0.0037  Score=58.45  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ...++|+|||. |.||+.+|..+. ..|.  +|+.+|++. ......++.       +..   ..++++.+++||+|+++
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEEEe
Confidence            34579999999 999999999998 7777  999999876 222222221       121   23677889999999998


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      .
T Consensus       228 v  228 (348)
T 2w2k_A          228 V  228 (348)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.71  E-value=0.0085  Score=53.19  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=49.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-------------------cHHH--HHHHhcCCCCCeEEEEeCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------------TPGV--TADISHMDTGAVVRGFLGQ   79 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-------------------~~~~--~~dl~~~~~~~~v~~~~~~   79 (332)
                      .||+|+|+ |.+|+.++..|+..|. .+|.++|.+.                   .+..  +..+........+..+...
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            58999999 9999999999998886 3899999875                   1222  2234332222344443211


Q ss_pred             C---CHHhhcCCCcEEEEcC
Q 020049           80 P---QLENALTGMDLVIIPA   96 (332)
Q Consensus        80 ~---d~~~a~~~aDiVi~~~   96 (332)
                      -   +.++.++++|+||.+.
T Consensus       110 ~~~~~~~~~~~~~DvVi~~~  129 (249)
T 1jw9_B          110 LDDAELAALIAEHDLVLDCT  129 (249)
T ss_dssp             CCHHHHHHHHHTSSEEEECC
T ss_pred             CCHhHHHHHHhCCCEEEEeC
Confidence            1   2345678999999984

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.68  E-value=0.023  Score=49.59  Aligned_cols=150  Identities=13%  Similarity=0.124  Sum_probs=74.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC---------HHhhcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---------LENALTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d---------~~~a~~~a   89 (332)
                      .+++.|+||+|.+|..++..|+. +.  .|+++|.++..  ..++.+.   ..+..+... ++         ..+.+...
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~--~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            5 KKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEH--LAALAEI---EGVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHH--HHHHHTS---TTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHH--HHHHHhh---cCCcceecccchHHHHHHHHHHHHhcCCC
Confidence            35799999999999999999987 65  89999987521  1122221   112211110 01         11223478


Q ss_pred             cEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        90 DiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      |++|.+||......   .+   ....+..|+..    .+.+.+.+++..  +.||+++......            +.|.
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~------------~~~~  142 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNG------------PHPG  142 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC----------------------
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCccccc------------CCCC
Confidence            99999998753221   11   12234455544    555555555443  5666665433221            1222


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+......+.+.++..++  +..|++..+
T Consensus       143 ~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  174 (245)
T 3e9n_A          143 NTIYAASKHALRGLADAFRKEEA--NNGIRVSTV  174 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            23344444344456667777664  334544443

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.67  E-value=0.0027  Score=56.60  Aligned_cols=114  Identities=14%  Similarity=0.100  Sum_probs=68.8

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC------
Q 020049           20 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (332)
Q Consensus        20 ~~kI~IiGa--~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (332)
                      .+++.|+||  +|.+|..++..|+..|.  +|++.|+++... ..++.+.. ..++..+. .-+|   .+++++      
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            357999998  89999999999999998  899999876221 12222211 11111111 1123   222332      


Q ss_pred             ----CCcEEEEcCCCCCC------C--CCCh---hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049           88 ----GMDLVIIPAGVPRK------P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus        88 ----~aDiVi~~~g~~~~------~--g~~r---~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                          ..|++|++||....      +  ..+.   ...+..|+.....+.+.+.++- +.+.||+++
T Consensus        83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence                78999999986531      1  1122   2345667777777777776553 245666665

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.66  E-value=0.0038  Score=58.40  Aligned_cols=99  Identities=22%  Similarity=0.300  Sum_probs=64.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|.+. ....+.++.       +..   ..++++.++.||+|+++.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEECC
Confidence            34579999999 9999999999987777  899999875 222222221       121   236789999999999985


Q ss_pred             CC-CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           97 GV-PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        97 g~-~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      .. +...+.     +  |    .+.   +...-|++++|+++  .++|.-
T Consensus       229 Plt~~t~~l-----i--~----~~~---l~~mk~gailIN~aRG~~vde~  264 (351)
T 3jtm_A          229 PLTEKTRGM-----F--N----KEL---IGKLKKGVLIVNNARGAIMERQ  264 (351)
T ss_dssp             CCCTTTTTC-----B--S----HHH---HHHSCTTEEEEECSCGGGBCHH
T ss_pred             CCCHHHHHh-----h--c----HHH---HhcCCCCCEEEECcCchhhCHH
Confidence            32 211111     1  1    122   23334789999986  455544

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=96.61  E-value=0.0021  Score=59.57  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|++.. ....   ....    +..   . ++++.+++||+|+++..
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~---~~~g----~~~---~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEEA---AEFQ----AEF---V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHHH---HTTT----CEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhHH---HhcC----cee---C-CHHHHHhhCCEEEEeCC
Confidence            4579999999 9999999999988787  8999998752 2211   1111    121   2 56788999999999864

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.59  E-value=0.013  Score=51.20  Aligned_cols=70  Identities=11%  Similarity=0.105  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .++|.|||+ |.+|...+..|+..|.  +|.++|.+... ...++....   .+.......+ ++.+.++|+||.+.+
T Consensus        31 gk~VLVVGg-G~va~~ka~~Ll~~GA--~VtVvap~~~~-~l~~l~~~~---~i~~i~~~~~-~~dL~~adLVIaAT~  100 (223)
T 3dfz_A           31 GRSVLVVGG-GTIATRRIKGFLQEGA--AITVVAPTVSA-EINEWEAKG---QLRVKRKKVG-EEDLLNVFFIVVATN  100 (223)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHGGGCC--CEEEECSSCCH-HHHHHHHTT---SCEEECSCCC-GGGSSSCSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCCCH-HHHHHHHcC---CcEEEECCCC-HhHhCCCCEEEECCC
Confidence            468999999 9999999999999887  89999976432 233343322   2222222223 467899999998743

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.58  E-value=0.0084  Score=57.47  Aligned_cols=91  Identities=15%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH-HHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ..++|+|+|. |.+|..+|..|...|.  +|+.+|+++.... +.  .. .  .  ..    .++++++++||+|+.+.+
T Consensus       210 ~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~--~~-G--~--~~----~sL~eal~~ADVVilt~g  275 (436)
T 3h9u_A          210 AGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAA--ME-G--Y--QV----LLVEDVVEEAHIFVTTTG  275 (436)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH--HT-T--C--EE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHH--Hh-C--C--ee----cCHHHHHhhCCEEEECCC
Confidence            3478999999 9999999999988887  8999999762221 11  11 1  1  11    257899999999998754


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      ...--+.                 +.+....|+++|++++++.
T Consensus       276 t~~iI~~-----------------e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          276 NDDIITS-----------------EHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             CSCSBCT-----------------TTGGGCCTTEEEEECSSSG
T ss_pred             CcCccCH-----------------HHHhhcCCCcEEEEeCCCC
Confidence            3211111                 1233345789999998664

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.57  E-value=0.011  Score=52.17  Aligned_cols=114  Identities=15%  Similarity=0.078  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCH---Hhhc------CCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------TGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a~------~~a   89 (332)
                      .+.+.|+||+|.+|..++..|+..|.  +|++.|++. .....++.     ..+..+. .-+|.   ++++      ...
T Consensus         9 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            9 DAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            35799999999999999999999998  899999854 22222221     1222211 11222   2222      389


Q ss_pred             cEEEEcCCCCCCC-------CCC---hhhhHhhhHHHHHHHHHHHHhh-----------CCCcEEEEecCCCC
Q 020049           90 DLVIIPAGVPRKP-------GMT---RDDLFNINAGIVRTLCEGIAKC-----------CPNATVNLISNPVN  141 (332)
Q Consensus        90 DiVi~~~g~~~~~-------g~~---r~~~~~~n~~~~~~i~~~i~~~-----------~p~a~viv~tNP~~  141 (332)
                      |++|.+||.....       ..+   ....+..|+.....+.+.+.++           ...+.||++|....
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            9999999864210       122   2344556766555555544433           23567777765443

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.56  E-value=0.023  Score=50.24  Aligned_cols=149  Identities=11%  Similarity=0.118  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEe-CCCC---HHhh----
Q 020049           19 AGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENA----   85 (332)
Q Consensus        19 ~~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a----   85 (332)
                      +.+++.|+||+  |.+|..++..|+..|.  .|+++|.+..   .....++.... ..++..+. +-+|   .+++    
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            34579999998  7999999999999998  8999988762   33334443211 12222211 1122   2222    


Q ss_pred             ---cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           86 ---LTGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        86 ---~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                         +...|++|..||......   .+.   ...+..|+....    .+.+.+.+.. .+.||+++......         
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~---------  165 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASMSGHI---------  165 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS---------
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccccccc---------
Confidence               236699999998754322   122   233455554444    4444445443 45566665432211         


Q ss_pred             HhCCCC-CCceEEeehhhHHHHHHHHHHHhC
Q 020049          153 KAGTYD-PKKLLGVTMLDVVRANTFVAEVLG  182 (332)
Q Consensus       153 ~~~~~~-~~kviG~~~ld~~r~~~~la~~l~  182 (332)
                        ..++ ..-.++.+......+.+.++..++
T Consensus       166 --~~~~~~~~~Y~~sK~a~~~~~~~la~e~~  194 (267)
T 3gdg_A          166 --ANFPQEQTSYNVAKAGCIHMARSLANEWR  194 (267)
T ss_dssp             --CCSSSCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             --cCCCCCCCcchHHHHHHHHHHHHHHHHhc
Confidence              1111 122344443334456777788775

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.54  E-value=0.0037  Score=57.35  Aligned_cols=64  Identities=25%  Similarity=0.368  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|.+.....+.++   .  .  ..    .++++.+++||+|+++.
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g--~--~~----~~l~ell~~aDvV~l~~  204 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N--G--KF----VDLETLLKESDVVTIHV  204 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T--C--EE----CCHHHHHHHCSEEEECC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C--c--cc----cCHHHHHhhCCEEEEec
Confidence            3479999999 9999999999988777  99999987643222211   1  1  21    15678899999999985

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.51  E-value=0.021  Score=50.37  Aligned_cols=74  Identities=15%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH---hh--------
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE---NA--------   85 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a--------   85 (332)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|+++  ......++....  .++..+. .-+|.+   ++        
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999998  899999876  222233343211  2333221 112321   22        


Q ss_pred             cCCCcEEEEcCC
Q 020049           86 LTGMDLVIIPAG   97 (332)
Q Consensus        86 ~~~aDiVi~~~g   97 (332)
                      +...|++|..||
T Consensus        81 ~g~id~lvnnAg   92 (260)
T 2qq5_A           81 QGRLDVLVNNAY   92 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            345699999994

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=96.49  E-value=0.0062  Score=56.83  Aligned_cols=97  Identities=24%  Similarity=0.306  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|..+|.........   . .    ...   ..++++.+++||+|++.....
T Consensus       173 gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~---~-g----~~~---~~~l~ell~~sDvV~l~~Plt  238 (345)
T 4g2n_A          173 GRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE---E-G----AIY---HDTLDSLLGASDIFLIAAPGR  238 (345)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH---T-T----CEE---CSSHHHHHHTCSEEEECSCCC
T ss_pred             CCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh---c-C----CeE---eCCHHHHHhhCCEEEEecCCC
Confidence            468999999 9999999999987776  999999875211111   1 1    121   236789999999999985321


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                        +. ++ .++  |    .+   .+...-|++++|+++  ..+|.-
T Consensus       239 --~~-T~-~li--~----~~---~l~~mk~gailIN~aRG~~vde~  271 (345)
T 4g2n_A          239 --PE-LK-GFL--D----HD---RIAKIPEGAVVINISRGDLINDD  271 (345)
T ss_dssp             --GG-GT-TCB--C----HH---HHHHSCTTEEEEECSCGGGBCHH
T ss_pred             --HH-HH-HHh--C----HH---HHhhCCCCcEEEECCCCchhCHH
Confidence              11 11 111  1    12   233334789999986  455544

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.49  E-value=0.01  Score=54.72  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHH----HHHHHhcCCCCCeEEEEe-CCCC---HHhhcC--
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPG----VTADISHMDTGAVVRGFL-GQPQ---LENALT--   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~----~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~--   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++.   ...    ....+...  ...+..+. .-+|   .+++++  
T Consensus         6 k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~--~~~~~~~~~Dvtd~~~v~~~~~~~   81 (324)
T 3u9l_A            6 KIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDN--DVDLRTLELDVQSQVSVDRAIDQI   81 (324)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHH
Confidence            5799999999999999999999998  888877652   111    11112111  12233221 1123   223333  


Q ss_pred             -----CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHH----HhhCCCcEEEEecC
Q 020049           88 -----GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (332)
Q Consensus        88 -----~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i----~~~~p~a~viv~tN  138 (332)
                           ..|++|.+||.....   ..+   ....+..|+.....+.+.+    ++. ..+.||++|.
T Consensus        82 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~-~~g~iV~isS  146 (324)
T 3u9l_A           82 IGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQ-KHGLLIWISS  146 (324)
T ss_dssp             HHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEEec
Confidence                 899999999865321   112   2234456665555555444    544 3456666654

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.49  E-value=0.0056  Score=59.81  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=73.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-----HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENALTG   88 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-----~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~   88 (332)
                      .+..+|.|+||+|.+|..++..|+..|. ..|++++++..     .....++....  ..+..+.. -+|   ..++++.
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~  300 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGG  300 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHH
Confidence            3456899999999999999999998876 25999998752     22333454332  34443322 233   3344555


Q ss_pred             C------cEEEEcCCCCCCC---CCCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           89 M------DLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        89 a------DiVi~~~g~~~~~---g~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +      |.||+++|.....   ..+.   ...+.-|+.....+.+.+.+. +...||++|
T Consensus       301 i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~~~~~V~~S  360 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  360 (486)
T ss_dssp             SCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             HHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcC-CCCEEEEEc
Confidence            4      9999999975432   1222   234456888888888887765 334555554

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.49  E-value=0.0088  Score=54.21  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=52.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+.+++.|+|| |.+|..++..|+..|. .+|+++|++..  +..+.++........+.... ..+++++++++|+||.+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-STTHHHHHHHSSEEEEC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HHHHHHHHhcCCEEEEC
Confidence            34568999999 9999999999998875 37999998762  33344443221112344332 24677888999999998


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      .
T Consensus       202 T  202 (283)
T 3jyo_A          202 T  202 (283)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.48  E-value=0.0098  Score=55.60  Aligned_cols=72  Identities=19%  Similarity=0.347  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|||+ |.+|...+..|.......+|.++|++.  .+..+.++... ....+..   ..++++++++||+||++.
T Consensus       129 ~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          129 ARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            468999999 999999887765432345999999986  23334444321 1122333   347789999999999984

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.47  E-value=0.005  Score=58.07  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC----CcHH------HHHHHhcCCCCCeEEEEeCCCCHHhhc
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV----NTPG------VTADISHMDTGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~----~~~~------~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (332)
                      ..++.||+|+|| |.+|..++..|...|. .+|+++|++    ..+.      ....+.+.. ..    .....++++++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~----~~~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT-NP----ERLSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CT----TCCCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhh-hc----cCchhhHHHHH
Confidence            456789999999 9999999998887774 589999998    3111      112233221 11    11235789999


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHH
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  145 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~  145 (332)
                      ++||++|=+.+ |   +.-           .+++.+.|.   ++++|+=.+||.--.++
T Consensus       262 ~~ADVlIG~Sa-p---~l~-----------t~emVk~Ma---~~pIIfalSNPt~E~~p  302 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NIL-----------KPEWIKKMS---RKPVIFALANPVPEIDP  302 (388)
T ss_dssp             TTCSEEEECSC-S---SCS-----------CHHHHTTSC---SSCEEEECCSSSCSSCH
T ss_pred             ccCCEEEEeCC-C---Ccc-----------CHHHHHhcC---CCCEEEEcCCCCCCCCH
Confidence            99999988754 3   321           123334432   57777777999865554

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.45  E-value=0.0038  Score=57.50  Aligned_cols=64  Identities=22%  Similarity=0.438  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|.+.....+.   ...  .  ..   . ++++.+++||+|+++.
T Consensus       141 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~---~~g--~--~~---~-~l~ell~~aDvVvl~~  204 (313)
T 2ekl_A          141 AGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAE---KIN--A--KA---V-SLEELLKNSDVISLHV  204 (313)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---HTT--C--EE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHH---hcC--c--ee---c-CHHHHHhhCCEEEEec
Confidence            4579999999 9999999999988787  999999876332221   111  1  11   1 5678899999999985

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.44  E-value=0.0054  Score=56.33  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|||+ |.+|..++..|... + ..+|.++|+++.+.  .++.... ...+..   ..++++++++||+|+++.
T Consensus       135 ~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~--~~l~~~~-~~~~~~---~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          135 SEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENA--EKFADTV-QGEVRV---CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHH--HHHHHHS-SSCCEE---CSSHHHHHTTCSEEEECC
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHH--HHHHHHh-hCCeEE---eCCHHHHHhcCCEEEEEe
Confidence            468999999 99999999888765 5 34899999875222  1222110 002232   246788999999999984

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.42  E-value=0.022  Score=51.66  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ...++|+|||+ |.+|..++..+...|.  +|+.+|++....  ..+....  .....   ..++++.++++|+|+++..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~--~~~~~~g--~~~~~---~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLL--ARIAEMG--MEPFH---ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHH--HHHHHTT--SEEEE---GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC--CeecC---hhhHHHHhcCCCEEEECCC
Confidence            34579999999 9999999999988887  999999875221  1122211  22211   2357788999999999863


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCc
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  142 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~  142 (332)
                      .    +.     +  |.    +   .+....|++++|+++ +|.++
T Consensus       223 ~----~~-----i--~~----~---~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LV-----V--TA----N---VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CC-----B--CH----H---HHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HH-----h--CH----H---HHHhcCCCCEEEEecCCCCCC
Confidence            2    11     1  11    1   222334788999987 77765

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=96.41  E-value=0.006  Score=56.70  Aligned_cols=65  Identities=26%  Similarity=0.356  Sum_probs=48.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|.+.....+.+   ..  .  ..    .++++.+++||+|+++.
T Consensus       163 l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~---~g--~--~~----~~l~ell~~aDvV~l~~  227 (335)
T 2g76_A          163 LNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSAS---FG--V--QQ----LPLEEIWPLCDFITVHT  227 (335)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHH---TT--C--EE----CCHHHHGGGCSEEEECC
T ss_pred             CCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhh---cC--c--ee----CCHHHHHhcCCEEEEec
Confidence            34579999999 9999999999987676  9999998763322221   11  1  11    15778899999999985

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.39  E-value=0.089  Score=46.42  Aligned_cols=151  Identities=15%  Similarity=0.157  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCC------HHhhcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~a~~~aDiV   92 (332)
                      .+.+.|+||++.+|..++..|++.|.  +|++.|+++..     +.... ...+..+. .-+|      .-+.+..-|++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~-----~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADG-----VHAPR-HPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTS-----TTSCC-CTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-----Hhhhh-cCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            35799999999999999999999998  99999998621     11111 12222211 1122      22456789999


Q ss_pred             EEcCCCCCCCC-CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           93 IIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        93 i~~~g~~~~~g-~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |..||...... .+   ....+.-|+..    .+...+.+++.  .+.||+++.-....            +.|..-.++
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~~~------------~~~~~~~Y~  148 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIASMYSTF------------GSADRPAYS  148 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECCGGGTS------------CCSSCHHHH
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEeeccccC------------CCCCCHHHH
Confidence            99999753221 12   12233445443    34444545433  47778876432211            122222233


Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .+.-.-..|.+.+|..++  |..|++-.+-
T Consensus       149 asKaav~~ltr~lA~Ela--~~gIrVNaV~  176 (242)
T 4b79_A          149 ASKGAIVQLTRSLACEYA--AERIRVNAIA  176 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hcCeEEEEEE
Confidence            332223346677787776  5566544443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=96.38  E-value=0.0057  Score=56.45  Aligned_cols=65  Identities=22%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc-CCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|..+|..+...|.  +|+.+|. +.....+.++.     .  ..   ..++++.+++||+|+++.
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-----~--~~---~~~l~ell~~aDvVil~~  210 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-----A--TF---HDSLDSLLSVSQFFSLNA  210 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-----C--EE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC-----c--EE---cCCHHHHHhhCCEEEEec
Confidence            4478999999 9999999999987776  9999998 76332222221     1  21   225778899999999985

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.36  E-value=0.003  Score=58.28  Aligned_cols=115  Identities=13%  Similarity=0.112  Sum_probs=63.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cH---HHHHHHhc-CCCCCeEEEEe-CCCC---HHhhcC---
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTADISH-MDTGAVVRGFL-GQPQ---LENALT---   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~---~~~~dl~~-~~~~~~v~~~~-~~~d---~~~a~~---   87 (332)
                      ++|.|+||+|.+|..++..|+..|.  ++++++.+.  ..   .....+.. ......+..+. .-+|   ..++++   
T Consensus         3 k~vlVTGas~GIG~ala~~L~~~G~--~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            3 TVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            4699999999999999999999987  666666543  21   11222210 01112333221 1223   223343   


Q ss_pred             --CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHH----HHhhCCCcEEEEecC
Q 020049           88 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~----i~~~~p~a~viv~tN  138 (332)
                        ..|++|++||......   .+   ....+..|+.....+.+.    +.+. ..+.||++|.
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-~~g~IV~isS  142 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRR-GSGRVLVTGS  142 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEE
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence              3899999998653211   12   223445565555555554    4443 3456666653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.35  E-value=0.015  Score=55.66  Aligned_cols=92  Identities=16%  Similarity=0.206  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|+|. |.+|..+|..+...|.  +|+.+|+++.+.... ..+.   .  ..    .++++++++||+|+.+.|.
T Consensus       219 ~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A-~~~G---~--~v----~~Leeal~~ADIVi~atgt  285 (435)
T 3gvp_A          219 GGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQA-CMDG---F--RL----VKLNEVIRQVDIVITCTGN  285 (435)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT---C--EE----CCHHHHTTTCSEEEECSSC
T ss_pred             cCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHH-HHcC---C--Ee----ccHHHHHhcCCEEEECCCC
Confidence            3468999999 9999999999987777  899999876222111 1111   1  11    2578999999999997442


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      +   +.-       |    .+.   +....|++++++++.+.
T Consensus       286 ~---~lI-------~----~e~---l~~MK~gailINvgrg~  310 (435)
T 3gvp_A          286 K---NVV-------T----REH---LDRMKNSCIVCNMGHSN  310 (435)
T ss_dssp             S---CSB-------C----HHH---HHHSCTTEEEEECSSTT
T ss_pred             c---ccC-------C----HHH---HHhcCCCcEEEEecCCC
Confidence            2   110       0    122   22335789999998654

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.33  E-value=0.0027  Score=58.53  Aligned_cols=97  Identities=21%  Similarity=0.250  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|+.+|.+...        ..   .+.......++++.+++||+|+++..  
T Consensus       139 g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~--------~~---~~~~~~~~~~l~ell~~aDiV~l~~P--  202 (315)
T 3pp8_A          139 EFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKS--------WP---GVESYVGREELRAFLNQTRVLINLLP--  202 (315)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCC--------CT---TCEEEESHHHHHHHHHTCSEEEECCC--
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchh--------hh---hhhhhcccCCHHHHHhhCCEEEEecC--
Confidence            478999999 9999999999987777  89999986521        00   11111112467899999999999852  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      ..+. ++ .++  |.       +.+....|++++|+++  .++|.-
T Consensus       203 lt~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd~~  237 (315)
T 3pp8_A          203 NTAQ-TV-GII--NS-------ELLDQLPDGAYVLNLARGVHVQEA  237 (315)
T ss_dssp             CCGG-GT-TCB--SH-------HHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             Cchh-hh-hhc--cH-------HHHhhCCCCCEEEECCCChhhhHH
Confidence            1111 11 111  11       2233334789999986  445543

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.33  E-value=0.013  Score=56.84  Aligned_cols=67  Identities=13%  Similarity=0.218  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC------CCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~------~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      +||+|||. |.+|.++|..|...      |+  +|++.+...  ....+.+..-.......      .+..+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~ta------~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGTL------GDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTCE------EEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCCC------CCHHHHHhcCCEE
Confidence            69999999 99999999999887      76  766555433  33333322111000001      2457899999999


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9984

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.32  E-value=0.0081  Score=55.27  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=50.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .+|+|||+ |.+|...+..|.......+|.++|++..+..+.++.... ...+..   . ++++++++||+||.+..
T Consensus       122 ~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~---~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          122 SVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM---A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE---C-CHHHHHHHCSEEEECCC
T ss_pred             cEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE---e-CHHHHHhhCCEEEEccC
Confidence            58999999 999999988877643356999999985444555544211 123332   3 67899999999999743

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=96.32  E-value=0.0048  Score=57.64  Aligned_cols=66  Identities=24%  Similarity=0.352  Sum_probs=48.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|.........++.     .  ..   ..++++.++.||+|+++.
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-----~--~~---~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-----L--QR---VSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-----C--EE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-----C--ee---cCCHHHHHhcCCEEEEcC
Confidence            34579999999 9999999999987777  999999875322222221     1  21   125778899999999985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=96.32  E-value=0.0052  Score=58.45  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=65.7

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCe---------EEEEeC------
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAV---------VRGFLG------   78 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~---------v~~~~~------   78 (332)
                      .++.++.||+|+|+ |.+|...+..+...|.  +|..+|++.. ...+.++.-......         ...+..      
T Consensus       185 ~g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~  261 (405)
T 4dio_A          185 AGTVPAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEY  261 (405)
T ss_dssp             TEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHH
T ss_pred             CCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhh
Confidence            34556789999999 9999999999988887  8999999873 233333311000000         001110      


Q ss_pred             ----CCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           79 ----QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        79 ----~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                          ..++.+++++||+||.++..|.+...   .++      .++..+.   -.|.++|+.++
T Consensus       262 ~~~~~~~l~e~l~~aDVVI~tvlipg~~ap---~Lv------t~emv~~---Mk~GsVIVDvA  312 (405)
T 4dio_A          262 QVKQAALVAEHIAKQDIVITTALIPGRPAP---RLV------TREMLDS---MKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECCCCSSSCCC---CCB------CHHHHTT---SCTTCEEEETT
T ss_pred             hhhhHhHHHHHhcCCCEEEECCcCCCCCCC---EEe------cHHHHhc---CCCCCEEEEEe
Confidence                01467889999999999876643221   111      1233333   34888888776

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.30  E-value=0.013  Score=52.00  Aligned_cols=74  Identities=20%  Similarity=0.329  Sum_probs=49.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-------------------cHH--HHHHHhcCCCCCeEEEEeCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------------TPG--VTADISHMDTGAVVRGFLGQ   79 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-------------------~~~--~~~dl~~~~~~~~v~~~~~~   79 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +|.++|.+.                   .++  .+..+........+..+...
T Consensus        29 ~~VlvvG~-GglG~~va~~La~~Gvg-~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  106 (251)
T 1zud_1           29 SQVLIIGL-GGLGTPAALYLAGAGVG-TLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR  106 (251)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCS-EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CcEEEEcc-CHHHHHHHHHHHHcCCC-eEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            59999999 99999999999999874 899998763                   111  12233333223445543211


Q ss_pred             ---CCHHhhcCCCcEEEEcC
Q 020049           80 ---PQLENALTGMDLVIIPA   96 (332)
Q Consensus        80 ---~d~~~a~~~aDiVi~~~   96 (332)
                         .+..+.++++|+||.+.
T Consensus       107 ~~~~~~~~~~~~~DvVi~~~  126 (251)
T 1zud_1          107 LTGEALKDAVARADVVLDCT  126 (251)
T ss_dssp             CCHHHHHHHHHHCSEEEECC
T ss_pred             CCHHHHHHHHhcCCEEEECC
Confidence               12345678899999873

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.26  E-value=0.015  Score=52.18  Aligned_cols=70  Identities=11%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +.+||+|||+ |.+|..++..|...|.  +|.++|++..+  +.++....   .+..   ..++.++++++|+||.+...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEV---VNSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEE---CSCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCee---ehhHHhhhcCCCEEEEeCCC
Confidence            3479999999 9999999999988886  99999987422  23333221   1332   22567888999999998654


Q ss_pred             C
Q 020049           99 P   99 (332)
Q Consensus        99 ~   99 (332)
                      +
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=96.25  E-value=0.0058  Score=57.68  Aligned_cols=115  Identities=23%  Similarity=0.250  Sum_probs=69.1

Q ss_pred             hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCe-----EEEEe---------
Q 020049           13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAV-----VRGFL---------   77 (332)
Q Consensus        13 ~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~-----v~~~~---------   77 (332)
                      +..++.++.||+|+|+ |.+|...+..+...|.  +|..+|++. ....+.++.-......     ...+.         
T Consensus       177 ~~~~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~  253 (381)
T 3p2y_A          177 TAAGTVKPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERA  253 (381)
T ss_dssp             CSSCEECCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHH
T ss_pred             cccCCcCCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHh
Confidence            3445567789999999 9999999998887777  899999987 2333333311000000     00000         


Q ss_pred             -CCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           78 -GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        78 -~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                       ...++++++++||+||.++..|......   ++      .++..+.|   .|+++||.++-+-+.
T Consensus       254 ~~~~~l~e~l~~aDIVI~tv~iPg~~ap~---Lv------t~emv~~M---kpGsVIVDvA~d~GG  307 (381)
T 3p2y_A          254 QQQQALEDAITKFDIVITTALVPGRPAPR---LV------TAAAATGM---QPGSVVVDLAGETGG  307 (381)
T ss_dssp             HHHHHHHHHHTTCSEEEECCCCTTSCCCC---CB------CHHHHHTS---CTTCEEEETTGGGTC
T ss_pred             hhHHHHHHHHhcCCEEEECCCCCCcccce---ee------cHHHHhcC---CCCcEEEEEeCCCCC
Confidence             0124678899999999997666422110   11      12333333   478888888754443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.25  E-value=0.0025  Score=60.75  Aligned_cols=75  Identities=23%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-C---CCCHHhhcCC--CcE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENALTG--MDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~-~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a~~~--aDi   91 (332)
                      +||+|+|| |.+|+.++..|++.+.. .+|++.|++.  .+..+.++.... ...+.... .   ..++++.+++  +|+
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            58999999 99999999999987743 5899999986  233344444321 01122111 1   1235566666  899


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      ||.+++
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999975

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.22  E-value=0.0041  Score=57.23  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|..+|..+...|.  +|+.+|++.....            +.    ..++++.++.||+|+++.
T Consensus       143 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------------~~----~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          143 QGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------------YP----FLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------------SC----BCCHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------------cc----cCCHHHHHhhCCEEEEeC
Confidence            4578999999 9999999999988777  9999998752110            01    135778899999999985

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.21  E-value=0.02  Score=52.72  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--CCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVi~~   95 (332)
                      .++||.|||. |..|.+ +|..|...|+  +|..+|.++.......|....  ..+..  +. + .+.+  .++|+||.+
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~~--g~-~-~~~l~~~~~d~vV~S   73 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVYE--GF-D-AAQLDEFKADVYVIG   73 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEEE--SC-C-GGGGGSCCCSEEEEC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEEC--CC-C-HHHcCCCCCCEEEEC
Confidence            3579999999 999985 8888999999  999999876221223344332  23332  22 3 2445  489999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhh-CCCcEEEEecCCCC--chHHHHHHHHHHhCCCCC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN--STVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~-~p~a~viv~tNP~~--~~t~~~~~~~~~~~~~~~  159 (332)
                      .|+|...-. ......++++++.++ +.+.++ ..+..+|-+|-..+  +.+.+++.+++. .|.++
T Consensus        74 pgi~~~~p~-~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~-~g~~~  137 (326)
T 3eag_A           74 NVAKRGMDV-VEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEY-AGLAP  137 (326)
T ss_dssp             TTCCTTCHH-HHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHH-TTCCC
T ss_pred             CCcCCCCHH-HHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHH-cCCCc
Confidence            888742111 111123344444332 222222 23445555654443  555666555544 45544

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.21  E-value=0.0086  Score=56.03  Aligned_cols=99  Identities=18%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEccCCcHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~----~~ei~L~D~~~~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++||+|+||+|.+|..+...|...+.    ..+|+++-.....+...+-.+....  ..+...  ..+ .++++++|+||
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~--~~~-~~~~~~~DvVf   85 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE--PTE-AAVLGGHDAVF   85 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE--ECC-HHHHTTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec--cCC-HHHhcCCCEEE
Confidence            46999999999999999999887761    2377776432211111111111110  111111  123 35688999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~  140 (332)
                      ++.|...                .+++++.+ +.  .+++|-.|+|-
T Consensus        86 ~alg~~~----------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           86 LALPHGH----------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             ECCTTSC----------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             ECCCCcc----------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            9864321                23555555 33  45777778775

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.21  E-value=0.036  Score=44.53  Aligned_cols=85  Identities=8%  Similarity=0.042  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ++.+|+|||++   |.+|..++..|...|+  +|+-+|....  .   +      ..+..+   .++.+..+.+|+++++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~~--~---i------~G~~~~---~s~~el~~~vDlvii~   76 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--E---I------EGLKCY---RSVRELPKDVDVIVFV   76 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---E------TTEECB---SSGGGSCTTCCEEEEC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCCC--e---E------CCeeec---CCHHHhCCCCCEEEEE
Confidence            46799999986   7899999999999888  6555554321  0   1      112222   2455666789999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEE
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL  135 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv  135 (332)
                      ..                .+...++++++.+....++++.
T Consensus        77 vp----------------~~~v~~v~~~~~~~g~~~i~~~  100 (138)
T 1y81_A           77 VP----------------PKVGLQVAKEAVEAGFKKLWFQ  100 (138)
T ss_dssp             SC----------------HHHHHHHHHHHHHTTCCEEEEC
T ss_pred             eC----------------HHHHHHHHHHHHHcCCCEEEEc
Confidence            41                2445555555655566664443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.21  E-value=0.0097  Score=53.66  Aligned_cols=151  Identities=15%  Similarity=0.127  Sum_probs=81.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEccCCcHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~-L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      +++|||+|+|++|.||+.++..+... ++  +|+ .+|.+.......|+.....  ...+..   ++|+++.++++|+||
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFI   77 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEE
Confidence            35689999999999999999887754 44  665 7887642111112211110  112222   235677788999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee-hh---h
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-ML---D  169 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~-~l---d  169 (332)
                      ... .               -....+.++...+...+   +++..| +...... +.+..+..- ...+++.. .+   -
T Consensus        78 Dft-~---------------p~~~~~~~~~a~~~G~~---vVigTt-G~~~e~~-~~L~~~a~~-~~vv~a~N~siGvn~  135 (273)
T 1dih_A           78 DFT-R---------------PEGTLNHLAFCRQHGKG---MVIGTT-GFDEAGK-QAIRDAAAD-IAIVFAANFSVGVNV  135 (273)
T ss_dssp             ECS-C---------------HHHHHHHHHHHHHTTCE---EEECCC-CCCHHHH-HHHHHHTTT-SCEEECSCCCHHHHH
T ss_pred             EcC-C---------------hHHHHHHHHHHHhCCCC---EEEECC-CCCHHHH-HHHHHhcCC-CCEEEEecCcHHHHH
Confidence            442 1               12334555555555433   345444 2221111 222332211 11233221 11   1


Q ss_pred             HHHHHHHHHHHhCCCCCCCceeEEEecCC
Q 020049          170 VVRANTFVAEVLGLDPRDVDVPVVGGHAG  198 (332)
Q Consensus       170 ~~r~~~~la~~l~v~~~~v~~~v~G~hg~  198 (332)
                      -.++....|+.|+   .+.+.-|+--|+.
T Consensus       136 ~~~l~~~aa~~~~---~~~dieiiE~Hh~  161 (273)
T 1dih_A          136 MLKLLEKAAKVMG---DYTDIEIIEAHHR  161 (273)
T ss_dssp             HHHHHHHHHHHHT---TTSEEEEEEEECT
T ss_pred             HHHHHHHHHHhcC---CCCCEEEEEeecC
Confidence            2456778888886   4677888988887

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.20  E-value=0.015  Score=56.32  Aligned_cols=115  Identities=20%  Similarity=0.252  Sum_probs=69.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhh-------cCC-Cc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENA-------LTG-MD   90 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a-------~~~-aD   90 (332)
                      +.+.|+||+|.+|..++..|+..|.  +|+++|++.......++.... ......  ++...+.++.       +.+ .|
T Consensus       214 k~~LVTGgsgGIG~aiA~~La~~Ga--~Vvl~~r~~~~~~l~~~~~~~-~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          214 KVAVVTGAARGIGATIAEVFARDGA--TVVAIDVDGAAEDLKRVADKV-GGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECGGGHHHHHHHHHHH-TCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CEEEEeCCchHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHc-CCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            5799999999999999999999988  899999865222211111110 011111  1111122222       224 89


Q ss_pred             EEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhC---CCcEEEEecC
Q 020049           91 LVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (332)
Q Consensus        91 iVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~---p~a~viv~tN  138 (332)
                      +||++||......   ++.   ...+.-|+.....+.+.+....   +.+.||++|.
T Consensus       291 ~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS  347 (454)
T 3u0b_A          291 ILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSS  347 (454)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECC
T ss_pred             EEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeC
Confidence            9999999764321   222   2345678877777777776552   4567777764

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.18  E-value=0.012  Score=55.42  Aligned_cols=71  Identities=21%  Similarity=0.479  Sum_probs=46.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++||+|+||+|++|..+...|...++ ..++.++......|....+.    ...+...  ..+ .+.++++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~----~~~~~~~--~~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFK----DQDITIE--ETT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEET----TEEEEEE--ECC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceec----CCCceEe--eCC-HHHhcCCCEEEECCC
Confidence            46999999999999999998887643 45888887544222211111    1223321  123 245889999999864

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.14  E-value=0.0043  Score=56.53  Aligned_cols=93  Identities=25%  Similarity=0.316  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC-
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV-   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~-   98 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|..+|++....        .   ....   ..++++.+++||+|+++... 
T Consensus       122 g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~--------~---~~~~---~~~l~ell~~aDiV~l~~P~t  184 (290)
T 3gvx_A          122 GKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQ--------N---VDVI---SESPADLFRQSDFVLIAIPLT  184 (290)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCT--------T---CSEE---CSSHHHHHHHCSEEEECCCCC
T ss_pred             cchheeecc-CchhHHHHHHHHhhCc--EEEEEecccccc--------c---cccc---cCChHHHhhccCeEEEEeecc
Confidence            479999999 9999999999988787  999999875210        0   0121   34678999999999998532 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      +...+.     +  |       .+.+....|++++|+++  .++|.-
T Consensus       185 ~~t~~l-----i--~-------~~~l~~mk~gailIN~aRG~~vd~~  217 (290)
T 3gvx_A          185 DKTRGM-----V--N-------SRLLANARKNLTIVNVARADVVSKP  217 (290)
T ss_dssp             TTTTTC-----B--S-------HHHHTTCCTTCEEEECSCGGGBCHH
T ss_pred             ccchhh-----h--h-------HHHHhhhhcCceEEEeehhcccCCc
Confidence            211111     1  1       11233334788999986  555544

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=96.14  E-value=0.0092  Score=56.08  Aligned_cols=97  Identities=20%  Similarity=0.323  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|+.+|.........+   ...    ..    .++++.++.||+|++.... 
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~---~g~----~~----~~l~ell~~aDvV~l~~Pl-  240 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEE---NGV----EP----ASLEDVLTKSDFIFVVAAV-  240 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHH---TTC----EE----CCHHHHHHSCSEEEECSCS-
T ss_pred             CCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhh---cCe----ee----CCHHHHHhcCCEEEEcCcC-
Confidence            469999999 9999999998876666  9999998753222221   111    11    2578999999999998532 


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                       .+. ++ .++  |       .+.+....|++++|+++  .++|.-
T Consensus       241 -t~~-T~-~li--~-------~~~l~~mk~gailIN~aRG~~vde~  274 (365)
T 4hy3_A          241 -TSE-NK-RFL--G-------AEAFSSMRRGAAFILLSRADVVDFD  274 (365)
T ss_dssp             -SCC-----CC--C-------HHHHHTSCTTCEEEECSCGGGSCHH
T ss_pred             -CHH-HH-hhc--C-------HHHHhcCCCCcEEEECcCCchhCHH
Confidence             111 11 011  1       12233345789999986  556544

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.13  E-value=0.012  Score=54.50  Aligned_cols=66  Identities=26%  Similarity=0.343  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|++.......++.       +..   . ++++.+++||+|+++..
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~-~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKELK-------ARY---M-DIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHHT-------EEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhcC-------cee---c-CHHHHHhhCCEEEEcCC
Confidence            34579999999 9999999999988787  999999987432222221       221   2 57788999999999853

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=96.12  E-value=0.006  Score=57.63  Aligned_cols=109  Identities=17%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c-HHHHHHHhcCC--CCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-~~~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ..++.||+|+|| |..|.+++..+...|. .+|+++|++- . .+...+|.+..  +..+....+...++++++++||++
T Consensus       185 ~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~  262 (398)
T 2a9f_A          185 SLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIF  262 (398)
T ss_dssp             CTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSE
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEE
Confidence            445689999999 9999999998887775 5999999874 1 11000111110  000000011134678999999998


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHH
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  145 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~  145 (332)
                      |=+.+ |   |.-           .+++.+.|   +++++|+=++||.--.++
T Consensus       263 IG~Sa-p---gl~-----------T~EmVk~M---a~~pIIfalsNPt~E~~p  297 (398)
T 2a9f_A          263 IGVSA-P---GVL-----------KAEWISKM---AARPVIFAMANPIPEIYP  297 (398)
T ss_dssp             EECCS-T---TCC-----------CHHHHHTS---CSSCEEEECCSSSCSSCH
T ss_pred             EecCC-C---CCC-----------CHHHHHhh---CCCCEEEECCCCCccCCH
Confidence            86642 2   321           22444444   379988888999866554

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.12  E-value=0.014  Score=54.85  Aligned_cols=70  Identities=17%  Similarity=0.307  Sum_probs=44.8

Q ss_pred             CeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEccCCcHHHH-HHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~-~l~~~~~-~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||+|+||+|++|.-+.. .|...++ ..++.++.... .|.. .++...  ...+..   .++ .+.++++|+|+.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~-~~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFD-IESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTC-HHHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCC-hhHhccCCEEEECCC
Confidence            689999999999999998 7777764 45888876543 2211 112110  112221   224 356899999999854

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.10  E-value=0.019  Score=56.35  Aligned_cols=117  Identities=18%  Similarity=0.114  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-----HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcC-
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENALT-   87 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-----~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-   87 (332)
                      .+..+|.|+||+|.+|..++..|+..|.. .|++++++..     .....++...  ..++..+.. -+|   +.+.++ 
T Consensus       257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~-~vvl~~R~~~~~~~~~~l~~~l~~~--g~~v~~~~~Dvtd~~~v~~~~~~  333 (511)
T 2z5l_A          257 QPSGTVLITGGMGAIGRRLARRLAAEGAE-RLVLTSRRGPEAPGAAELAEELRGH--GCEVVHAACDVAERDALAALVTA  333 (511)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCS-EEEEEESSGGGSTTHHHHHHHHHTT--TCEEEEEECCSSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCc-EEEEEecCCcccHHHHHHHHHHHhc--CCEEEEEEeCCCCHHHHHHHHhc
Confidence            34568999999999999999999888762 5899988651     2333445433  234443322 234   233444 


Q ss_pred             -CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           88 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        88 -~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                       ..|+||+++|......   .+.   ...+.-|+.....+.+.+....+...||++|
T Consensus       334 ~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~S  390 (511)
T 2z5l_A          334 YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFS  390 (511)
T ss_dssp             SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEE
T ss_pred             CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEe
Confidence             3899999999754321   222   2334567777777777665441323444444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.07  E-value=0.008  Score=59.35  Aligned_cols=64  Identities=23%  Similarity=0.340  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.+|+.+|..|...|.  +|+.+|.+.....+.++.       +..   . ++++.+++||+|+++.
T Consensus       141 ~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~---~-~l~e~~~~aDvV~l~~  204 (529)
T 1ygy_A          141 FGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL---L-SLDDLLARADFISVHL  204 (529)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE---C-CHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE---c-CHHHHHhcCCEEEECC
Confidence            3479999999 9999999999988777  999999876322232221       111   1 5678899999999985

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.06  E-value=0.0068  Score=52.86  Aligned_cols=98  Identities=17%  Similarity=0.055  Sum_probs=58.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhh-cCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVi~~   95 (332)
                      .++|.|+|+ |.+|+.++..|...++   ++++|.++...  ..+. ..  ..+... ..++   ++++ +++||.||++
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~--~~~~-~~--~~~i~g-d~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRK--KVLR-SG--ANFVHG-DPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHH--HHHH-TT--CEEEES-CTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHH--HHHh-cC--CeEEEc-CCCCHHHHHhcCcchhcEEEEc
Confidence            468999999 9999999999877664   88999876322  2222 11  222211 1223   2233 7899999998


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEE-EEecCCCCc
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV-NLISNPVNS  142 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~v-iv~tNP~~~  142 (332)
                      .+.         |  ..|..    ++..+++..|+..+ .-+.+|.+.
T Consensus        79 ~~~---------d--~~n~~----~~~~a~~~~~~~~iia~~~~~~~~  111 (234)
T 2aef_A           79 LES---------D--SETIH----CILGIRKIDESVRIIAEAERYENI  111 (234)
T ss_dssp             CSC---------H--HHHHH----HHHHHHHHCSSSEEEEECSSGGGH
T ss_pred             CCC---------c--HHHHH----HHHHHHHHCCCCeEEEEECCHhHH
Confidence            421         1  33333    44455667787544 445677653

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.05  E-value=0.016  Score=54.67  Aligned_cols=71  Identities=15%  Similarity=0.286  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEccCCcHHHH-HHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~-~l~~~~~-~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||+|+||+|++|.-+.. .|...++ ..++.++.... .|.. .++...  ...+..   .++ .+.++++|+|+++.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~-~~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATS-IDDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTC-HHHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCC-hhHhcCCCEEEECC
Confidence            4799999999999999998 7777764 45888876543 1211 122111  112221   223 35688999999985


Q ss_pred             C
Q 020049           97 G   97 (332)
Q Consensus        97 g   97 (332)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.04  E-value=0.011  Score=54.20  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ...++|+|||. |.+|+.+|..+...|.  +|+.+|++.. .      . ..    .   ...++++.++.||+|+++.
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~------~-~~----~---~~~~l~ell~~aDvV~l~~  182 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E------G-PW----R---FTNSLEEALREARAAVCAL  182 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C------S-SS----C---CBSCSHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c------c-Cc----c---cCCCHHHHHhhCCEEEEeC
Confidence            34579999999 9999999999988787  9999998653 0      0 10    1   1135678899999999985

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.03  E-value=0.013  Score=55.62  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|||. |.||+.+|..+...|.  +|+.+|.+. ......++.       +..   ..++++.++.||+|++..
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~~  255 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  255 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEec
Confidence            4579999999 9999999999987776  999999875 222222221       111   135788899999999985

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.99  E-value=0.01  Score=55.80  Aligned_cols=75  Identities=23%  Similarity=0.251  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .++++|+|+|+ |.+|..++..+...|.  +|+++|+++.+ ..+.+.  ..  ..+.. .....++.+.++++|+||.+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g--~~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FG--GRVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TT--TSEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cC--ceEEEecCCHHHHHHHHhCCCEEEEC
Confidence            45689999999 9999999999998887  89999987622 122211  11  12221 11123566778999999999


Q ss_pred             CCCC
Q 020049           96 AGVP   99 (332)
Q Consensus        96 ~g~~   99 (332)
                      ++.+
T Consensus       237 ~g~~  240 (369)
T 2eez_A          237 VLVP  240 (369)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8765

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.98  E-value=0.025  Score=54.64  Aligned_cols=72  Identities=15%  Similarity=0.081  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCC---CHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~~aDiVi~~   95 (332)
                      .++|.|+|+ |++|+.++..|+..|.  +|+++|++..  .+.++....  ..+.... ..+   ++.++++++|+||++
T Consensus         3 ~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~--~a~~la~~~--~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            3 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGV--QHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHH--HHHHTTTTC--TTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHH--HHHHHHHhc--CCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            468999997 9999999999998776  8999998642  222333221  1122111 112   344678899999999


Q ss_pred             CCC
Q 020049           96 AGV   98 (332)
Q Consensus        96 ~g~   98 (332)
                      ++.
T Consensus        76 a~~   78 (450)
T 1ff9_A           76 IPY   78 (450)
T ss_dssp             CC-
T ss_pred             Ccc
Confidence            864

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.97  E-value=0.0077  Score=55.84  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|+.+|... ......++.       +..    .++++.++.||+|+++...
T Consensus       145 g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~----~~l~ell~~aDvV~l~~P~  210 (330)
T 4e5n_A          145 NATVGFLGM-GAIGLAMADRLQGWGA--TLQYHEAKALDTQTEQRLG-------LRQ----VACSELFASSDFILLALPL  210 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHTTTSCC--EEEEECSSCCCHHHHHHHT-------EEE----CCHHHHHHHCSEEEECCCC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCCCcHhHHHhcC-------cee----CCHHHHHhhCCEEEEcCCC
Confidence            479999999 9999999999877676  999999876 332222221       121    2578899999999998532


Q ss_pred             -CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 -~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                       +...+.     +  |       .+.+...-|++++|+++  .++|.-
T Consensus       211 t~~t~~l-----i--~-------~~~l~~mk~gailIN~arg~~vd~~  244 (330)
T 4e5n_A          211 NADTLHL-----V--N-------AELLALVRPGALLVNPCRGSVVDEA  244 (330)
T ss_dssp             STTTTTC-----B--C-------HHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             CHHHHHH-----h--C-------HHHHhhCCCCcEEEECCCCchhCHH
Confidence             111111     1  1       12233335789999986  555544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.94  E-value=0.019  Score=52.97  Aligned_cols=69  Identities=12%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|||+ |.+|...+..|.......+|.++|++.  ++..+.++....  ..+. .   .++++++ ++|+|+++-
T Consensus       125 ~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~~-~---~~~~e~v-~aDvVi~aT  195 (322)
T 1omo_A          125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS-V---QPAEEAS-RCDVLVTTT  195 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE-E---CCHHHHT-SSSEEEECC
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceEE-E---CCHHHHh-CCCEEEEee
Confidence            468999999 999999988887643345999999986  333444443321  1233 2   3678889 999999984

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.94  E-value=0.017  Score=53.95  Aligned_cols=33  Identities=27%  Similarity=0.500  Sum_probs=26.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY   52 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~   52 (332)
                      +++||+|+||+|.+|..++..|...+.. +|+.+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai   35 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKV   35 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEE
Confidence            3579999998899999999988766533 77666

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=95.93  E-value=0.0064  Score=56.88  Aligned_cols=98  Identities=14%  Similarity=0.163  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||. |.+|+.+|..+...|.  +|+.+|.....   .......    +..   ..++++.+++||+|+++...
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~---~~~~~~g----~~~---~~~l~ell~~aDiV~l~~Pl  225 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGM--NVLVWGRENSK---ERARADG----FAV---AESKDALFEQSDVLSVHLRL  225 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSHHHH---HHHHHTT----CEE---CSSHHHHHHHCSEEEECCCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEECCCCCH---HHHHhcC----ceE---eCCHHHHHhhCCEEEEeccC
Confidence            3479999999 9999999999988787  99999975311   1111111    122   23678999999999998532


Q ss_pred             -CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 -~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                       +...+.     +  |.       +.+...-|++++|+++  .++|.-
T Consensus       226 t~~t~~l-----i--~~-------~~l~~mk~gailIN~aRg~~vd~~  259 (352)
T 3gg9_A          226 NDETRSI-----I--TV-------ADLTRMKPTALFVNTSRAELVEEN  259 (352)
T ss_dssp             STTTTTC-----B--CH-------HHHTTSCTTCEEEECSCGGGBCTT
T ss_pred             cHHHHHh-----h--CH-------HHHhhCCCCcEEEECCCchhhcHH
Confidence             111111     1  11       1233335789999986  555554

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.93  E-value=0.015  Score=53.83  Aligned_cols=97  Identities=22%  Similarity=0.246  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|..+|.+....        ........   ..++++.+++||+|+++..  
T Consensus       137 gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~--------~~~~~~~~---~~~l~ell~~aDvV~l~lP--  200 (324)
T 3evt_A          137 GQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPA--------DHFHETVA---FTATADALATANFIVNALP--  200 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCC--------TTCSEEEE---GGGCHHHHHHCSEEEECCC--
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchh--------HhHhhccc---cCCHHHHHhhCCEEEEcCC--
Confidence            468999999 9999999999988787  999999865210        00111111   2356889999999999852  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      ..+. ++ .++  |.       +.+....|++++|+++  .++|.-
T Consensus       201 lt~~-t~-~li--~~-------~~l~~mk~gailIN~aRG~~vd~~  235 (324)
T 3evt_A          201 LTPT-TH-HLF--ST-------ELFQQTKQQPMLINIGRGPAVDTT  235 (324)
T ss_dssp             CCGG-GT-TCB--SH-------HHHHTCCSCCEEEECSCGGGBCHH
T ss_pred             CchH-HH-Hhc--CH-------HHHhcCCCCCEEEEcCCChhhhHH
Confidence            1111 11 111  11       2233335788999986  445543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.92  E-value=0.017  Score=53.57  Aligned_cols=62  Identities=19%  Similarity=0.328  Sum_probs=47.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|||. |.+|+.+|..+...|.  +|+.+|...... ..++   .     . .  ..++++.+++||+|+++.
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~---~-----~-~--~~~l~ell~~aDvV~l~~  207 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK---G-----Y-Y--VDSLDDLYKQADVISLHV  207 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT---T-----C-B--CSCHHHHHHHCSEEEECS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh---C-----e-e--cCCHHHHHhhCCEEEEcC
Confidence            468999999 9999999999987777  999999876332 2211   1     1 1  125678899999999985

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=95.92  E-value=0.011  Score=55.15  Aligned_cols=79  Identities=16%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             HhhhhhccCCCCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEE-EEccCCcHH--HHHHHhcCCCCCeEEEEeCCCCHH
Q 020049            8 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLH-LYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLE   83 (332)
Q Consensus         8 ~~~~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~-~~~~~~ei~-L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~   83 (332)
                      +++.-+++..++++||+|||+ |.+|...+..|. ..+-. +|+ ++|.++.+.  .+..+.-     ....+   +|++
T Consensus        11 ~~~~~~~~~~m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~g~-----~~~~~---~~~~   80 (357)
T 3ec7_A           11 SSGRENLYFQGMTLKAGIVGI-GMIGSDHLRRLANTVSGV-EVVAVCDIVAGRAQAALDKYAI-----EAKDY---NDYH   80 (357)
T ss_dssp             -----------CCEEEEEECC-SHHHHHHHHHHHHTCTTE-EEEEEECSSTTHHHHHHHHHTC-----CCEEE---SSHH
T ss_pred             cCCccccccCCCeeeEEEECC-cHHHHHHHHHHHhhCCCc-EEEEEEeCCHHHHHHHHHHhCC-----CCeee---CCHH
Confidence            445556666677889999999 999999998887 43322 654 899987332  2232210     12222   3677


Q ss_pred             hhcC--CCcEEEEcC
Q 020049           84 NALT--GMDLVIIPA   96 (332)
Q Consensus        84 ~a~~--~aDiVi~~~   96 (332)
                      +.++  +.|+|+++.
T Consensus        81 ~ll~~~~~D~V~i~t   95 (357)
T 3ec7_A           81 DLINDKDVEVVIITA   95 (357)
T ss_dssp             HHHHCTTCCEEEECS
T ss_pred             HHhcCCCCCEEEEcC
Confidence            7776  589999984

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.87  E-value=0.016  Score=52.75  Aligned_cols=67  Identities=12%  Similarity=0.200  Sum_probs=45.0

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEccCCcHH--HHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           18 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~-~a~~l~~~~~~~ei~-L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      ++++||+|||+ |.+|.. ++..|...+.. +++ ++|.++.+.  .+..+.   . +.      .+|+++.++++|+|+
T Consensus         4 M~~~~igiIG~-G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~~---~-~~------~~~~~~ll~~~D~V~   71 (308)
T 3uuw_A            4 MKNIKMGMIGL-GSIAQKAYLPILTKSERF-EFVGAFTPNKVKREKICSDYR---I-MP------FDSIESLAKKCDCIF   71 (308)
T ss_dssp             -CCCEEEEECC-SHHHHHHTHHHHTSCSSS-EEEEEECSCHHHHHHHHHHHT---C-CB------CSCHHHHHTTCSEEE
T ss_pred             cccCcEEEEec-CHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcC---C-CC------cCCHHHHHhcCCEEE
Confidence            45689999999 999996 78777664432 665 899876322  222221   1 11      247788889999999


Q ss_pred             EcC
Q 020049           94 IPA   96 (332)
Q Consensus        94 ~~~   96 (332)
                      ++.
T Consensus        72 i~t   74 (308)
T 3uuw_A           72 LHS   74 (308)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            984

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.83  E-value=0.0071  Score=57.06  Aligned_cols=77  Identities=22%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++.+|+|+|+ |.+|..++..+...|.  +|+.+|++..+ ..+.+..  .....+.. ....++.+.++++|+||.++
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~--g~~~~~~~-~~~~~l~~~l~~aDvVi~~~  239 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEF--CGRIHTRY-SSAYELEGAVKRADLVIGAV  239 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSSEEEE-CCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhc--CCeeEecc-CCHHHHHHHHcCCCEEEECC
Confidence            45679999999 9999999999988887  89999987622 2222211  11111211 11235667789999999998


Q ss_pred             CCCC
Q 020049           97 GVPR  100 (332)
Q Consensus        97 g~~~  100 (332)
                      +.|.
T Consensus       240 ~~p~  243 (377)
T 2vhw_A          240 LVPG  243 (377)
T ss_dssp             CCTT
T ss_pred             CcCC
Confidence            8764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	3e-49
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	4e-48
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-42
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	6e-35
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	6e-31
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	6e-31
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	2e-29
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	3e-29
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	5e-29
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	8e-29
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	1e-28
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-28
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	2e-28
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	2e-28
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	4e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	4e-28
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	1e-26
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	9e-26
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	8e-25
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	1e-24
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	3e-24
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	8e-24
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	8e-24
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	2e-23
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	3e-23
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	4e-23
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	5e-23
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	5e-23
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	8e-23
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	9e-23
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	1e-22
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	1e-22
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-22
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	2e-22
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	4e-22
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	6e-22
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	3e-21
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	4e-21
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	9e-20
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	3e-19
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	4e-19
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-18
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	2e-18
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	3e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	3e-16
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	5e-14
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	1e-12

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  160 bits (405), Expect = 3e-49
 Identities = 88/167 (52%), Positives = 116/167 (69%)

Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 224
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P   F Q++   LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 225 RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFF 284
           RIQ  GTEVV+AKAGAGSATLSMAYA  +F  + +  + G  GVVEC+FV SQ T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 285 ASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSK 331
           ++ + LG++G E+   +G ++ +E   + +A  EL  SI+KG  F K
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVK 167

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  157 bits (398), Expect = 4e-48
 Identities = 87/168 (51%), Positives = 110/168 (65%), Gaps = 1/168 (0%)

Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 224
           VT LD++R+NTFVAE+ G  P +V+VPV+GGH+GVTILPLLSQV     FT++E   LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 225 RIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFF 284
           RIQN GTEVVEAKAG GSATLSM  AA +F  + +R L+G+ GVVECA+V        FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 285 ASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISFSKK 332
           +  + LG+ G EE   +G L+ +E+  LE     L   I  G  F  K
Sbjct: 120 SQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 167

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  142 bits (358), Expect = 2e-42
 Identities = 92/143 (64%), Positives = 115/143 (80%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
           ST+PI AEVFKK G Y+P K+ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (307), Expect = 6e-35
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 62  -DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           VN+TV IAAEV KKAG YD  KL G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  113 bits (283), Expect = 6e-31
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGA---VV 73
            +A+ GAAG I   L   +    +        L L     +      ++     +   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 74  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 132
           R              +D  ++    PR PGM R  L +IN  I     + +      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 133 VNLISNPVNSTVPIAAE 149
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  112 bits (281), Expect = 6e-31
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----FTQEETEYL 222
           +LD  R  +F+A  LG+  +D++  V+GGH    +  +                E  + L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 223 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP 282
             R +NGG E+VE     GSA  + A + V+  ++     R                +  
Sbjct: 63  VERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESI-VLDRKRVLPCAVGLEGQYGIDKT 120

Query: 283 FFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           F    V+LGR G E+I+++  L++ +   L+K+ K +  + + 
Sbjct: 121 FVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKM 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  107 bits (269), Expect = 2e-29
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+  +GA G +G   A    +N  V  + L D+      G   D++H   G      +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
               + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGV 165
           ++    I      K       ++ G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (268), Expect = 3e-29
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTGAVV 73
           +VA+ GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 74  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 132
            G       + A    D  ++    PRK GM R DL  +N  I       +A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKK 161
           V ++ NP N+   IA   +K A   +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  106 bits (266), Expect = 5e-29
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVAI+GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
               +     +K       K++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (265), Expect = 8e-29
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           K+ I+G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
               L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
               +    F K    DP+K+ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
              E      D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NP
Sbjct: 62  DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    IA  V +K       ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  106 bits (265), Expect = 1e-28
 Identities = 40/163 (24%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY----L 222
           +LD  R  TF+A   G+  +DV   ++GGH    +             ++         +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 223 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELP 282
             R + GG E+V      GSA  + A A  +  +A L+  +    V         + ++ 
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIY 121

Query: 283 FFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
           F    V LG  G E+I +L PLNE E   L  + K +  ++  
Sbjct: 122 FG-VPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 162

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL 77
           KV+++GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 78  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
            +        G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +      S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           NPV+    +      +AG    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  105 bits (263), Expect = 2e-28
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 22  KVAILGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV--- 73
           +V + GAAG I   L        +       +L L D+    GV   +        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 74  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 133
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K    +  
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 134 NL-ISNPVNSTVPIAAEVFKK 153
            + + NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  104 bits (260), Expect = 4e-28
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                     D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGV 165
           ++    +A            ++++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  104 bits (260), Expect = 4e-28
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQP 80
           K++I+GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
                    D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLG 164
           ++   +AAEV      +  ++++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  100 bits (251), Expect = 1e-26
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 18  AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 76
           A   K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 131
           +      + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165
            + +++NPV+  V +      +       K++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 99.4 bits (247), Expect = 9e-26
 Identities = 33/176 (18%), Positives = 57/176 (32%), Gaps = 13/176 (7%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
           T LD  RA   +A  LG+   DV   ++ G+   T  P ++  K      +         
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 226 IQNGGTEVVEAKAGAG---------SATLSMAYAAVKFADACLRGLRGDAGVVECAFVAS 276
                 E +      G         S+ +S A A          G      V        
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 277 Q---VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
               V +   ++  V +  +  + +  L P+N++ R  ++   KELA   +    F
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEF 175

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 95.9 bits (238), Expect = 8e-25
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
               I      K   +  ++++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 96.1 bits (238), Expect = 1e-24
 Identities = 27/169 (15%), Positives = 50/169 (29%), Gaps = 7/169 (4%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ-----EETE 220
             LD  R    + E LG+        V+G H                         ++ +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 221 YLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTE 280
                 ++      E     G  + ++  +    A+  ++ L     V         + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 281 LPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
             F +    L   G   I ++  L   E   L+K+   L   IQK + F
Sbjct: 123 NVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTLW-DIQKDLKF 169

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 94.4 bits (234), Expect = 3e-24
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQP 80
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +   
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 81  -QLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP   + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 93.2 bits (231), Expect = 8e-24
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 20  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFL 77
           G +V ++GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 78  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
                +      DLV+I AG  +KPG TR DL + N  I R++ E +          + +
Sbjct: 65  WHGDYD-DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           NPV+    I      K      ++++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 93.5 bits (232), Expect = 8e-24
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L D       G   D+ H     +    +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVF 78

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
            +  N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + +++NP
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    +      K   +   +++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 93.0 bits (230), Expect = 2e-23
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 17/174 (9%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILP----------LLSQVKPPCSFT 215
           T LD  R    +AE++ +D R V   ++G H                 +   VK      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 216 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 275
           +++   +   +++   E+++ K   G+    +A A  + + A L        +    ++ 
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLK---GATFYGIATALARISKAILNDENAV--LPLSVYMD 115

Query: 276 SQVTEL-PFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 328
            Q      +  +   + R G + I ++ PL ++E   ++K+  +L   +    +
Sbjct: 116 GQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDAFA 168

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 92.2 bits (228), Expect = 3e-23
 Identities = 29/160 (18%), Positives = 57/160 (35%), Gaps = 3/160 (1%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
             LD  R    ++E      ++V+  ++G H G   +P+ S+V    +  +   +     
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 226 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 285
           + +     ++     G+     A       +A L                    +   F 
Sbjct: 62  LGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-TAFG 120

Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
             V LG  G EEI +   L++YE+  +  A ++L+    K
Sbjct: 121 VPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 159

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 91.8 bits (227), Expect = 4e-23
 Identities = 26/172 (15%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------ 213
           T LD  R    +A+  G++ ++V   + G H    +    S                   
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 214 FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF 273
              ++ E +   ++N   +++  K     A   +  + V   +A L        V     
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYA---IGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 274 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
               ++++        L RQG        P+++ E   L+++ + L  +  +
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 167

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 91.8 bits (227), Expect = 5e-23
 Identities = 27/170 (15%), Positives = 53/170 (31%), Gaps = 8/170 (4%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYL 222
           T LD  R    + +   +DPR VD  ++G H G +     S       P     +E    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVS 59

Query: 223 TNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVT--- 279
            + +      V        +   +  Y          + +  D   V             
Sbjct: 60  DDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGL 119

Query: 280 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
              +  +   +G  G ++I +  PL+  E   ++ +   L   +  G++ 
Sbjct: 120 NDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLAE 168

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 5e-23
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ +    L   L L DV+     G   D+ H          +  
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                      +V++ AGV ++ G +R +L   N  + + +   I K  P+  + ++SNP
Sbjct: 81  KDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    +      K       +++G
Sbjct: 140 VDILTYVT----WKLSGLPKHRVIG 160

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.1 bits (225), Expect = 8e-23
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 10/170 (5%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------E 217
             LD  R    + E LG++P      V+G H   ++           +           +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 218 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 277
             ++  N  +       E     G  + ++  +    A + L+ L+    V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 278 VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGI 327
           + E  F +    LG  G  +  ++  +   E   L+K+   L   +QK +
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKKSADTLWN-MQKNL 170

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 91.1 bits (225), Expect = 9e-23
 Identities = 35/174 (20%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----------CSFT 215
           T+LD  R  T +A+  G  PR V V V+G H    +      +                 
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 216 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 275
            +  E    + +    E++E K     A        V+      + +   +  +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 276 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGISF 329
             +      +  V LG+ G E I +L  LNE E     K+   L  +I +  + 
Sbjct: 122 KDL----CISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEITAE 170

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 91.1 bits (225), Expect = 1e-22
 Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
           T LD +R    +A+  G+   +V   ++G H G +++PLLS         Q+   +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 226 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ----VTEL 281
           I     +V               +         +R +  +   +                
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 282 PFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
                 V++GR G EE+  +  L++ E I   K+ + +    ++
Sbjct: 122 VCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 164

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 90.7 bits (224), Expect = 1e-22
 Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 3/162 (1%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
           T+LD  R    V E   LDPR V    +G H G +     S V+          +     
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 226 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 285
           +     E  +      +     +Y     A    + +  DA                + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGI 327
               +GR G      L  L   E+  L +++  +     + +
Sbjct: 120 YPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIV 160

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 90.7 bits (224), Expect = 1e-22
 Identities = 20/173 (11%), Positives = 55/173 (31%), Gaps = 15/173 (8%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 216
           T+LD  R    + E   + P++V   ++G H    +              +         
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 217 -EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVA 275
            ++ E +   +++   +++E K               +        +   +  ++  +  
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 276 SQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 328
             V    +      + R G  E+ ++  LN+ E+     +   L   + +  +
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARAFT 168

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 89.1 bits (220), Expect = 2e-22
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD----VVNTPGVTADISHMDTGAVV--RG 75
           KV I+GA+G +G   A+L+   P +  L L      +    G+  DI     G       
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
           ++   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK-IFV 120

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 4e-22
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 216
             LD  R    +AE LG+ P      ++G H G + + + S V       Q         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 217 ---EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAF 273
              E  + +   +     EV++ K     A   +  +     ++ L+ L     V     
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWA---IGLSVADLIESMLKNLSRIHPVSTMVK 118

Query: 274 VASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGI 327
               +    F +    L  +G   +     L + E   L+K+   L   IQK +
Sbjct: 119 GMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKKSADTLWD-IQKDL 170

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 87.8 bits (217), Expect = 6e-22
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           K+ I+G  G +G  +A  +    +       D          I   D  A +        
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 82  LEN-ALTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
            +  AL   D+VI   G  +     P   R       + +V+++   + +   +  + +I
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           SNPV+    +   +F+    +   K++G
Sbjct: 122 SNPVD----VITALFQHVTGFPAHKVIG 145

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 87.2 bits (215), Expect = 3e-21
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 216
           T+LD +R    ++E LG+D ++V   ++G H    +           +  +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 217 --EETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFV 274
             E+ + +   ++  G  +++ K              V+        +R    V+   + 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 275 ASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
                     +    +  +G +E+ Q   L   E   L  + +++   + +
Sbjct: 121 IED----VAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 166

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 86.4 bits (213), Expect = 4e-21
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 14/162 (8%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL---------LSQVKPPCSFTQE 217
           +LD  R   ++++ L + PRDV+  +VG H    +L           L +       +  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 218 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 277
           E E + +R  N   E+V   A    A  +      +     L+ +   + ++E  +  S 
Sbjct: 62  ELEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSD 121

Query: 278 VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
           +    F  + V LG  G E++ +L  LN  E+   ++A  E 
Sbjct: 122 I----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAET 158

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 83.5 bits (206), Expect = 9e-20
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 12/164 (7%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET------ 219
           T LD  RA   +A   G+    V    + G+   T +P     K      +E        
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 220 -EYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ- 277
            E  T  +Q  G  +++      S+  S A +      + +             +     
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 278 --VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
             + E   F+   R    G  E+      +++    ++K++ EL
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKKSEAEL 162

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 81.7 bits (201), Expect = 3e-19
 Identities = 32/164 (19%), Positives = 54/164 (32%), Gaps = 7/164 (4%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK----PPCSFTQEETEY 221
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P       E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 222 LTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ--VT 279
                          +A   S+  S A AA++       G      V        +  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 280 ELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSI 323
           E   ++  V   + GA  + +   +NE+ R  +E   +EL   +
Sbjct: 122 EGIVYSFPV-TAKDGAYRVVEGLEINEFARKRMEITAQELLDEM 164

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 81.1 bits (199), Expect = 4e-19
 Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 13/171 (7%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFT---------QE 217
           MLD  R   +VA+ L + PRDV   V+G H    +  +                    ++
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 218 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQ 277
           + E +    +  G E+V    G GSA  + A +AV  A + L   +              
Sbjct: 63  QLEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYG 121

Query: 278 VTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQKGIS 328
           + +  F      +G  G E + +L  LNE E+   +K+  ++   + K ++
Sbjct: 122 LKD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMA-LNKAVA 169

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 79.5 bits (195), Expect = 2e-18
 Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 7/158 (4%)

Query: 168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS-----FTQEETEYL 222
           LD  RA + +A   G     ++   V G+   T+       +   +        +     
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 223 TNRIQNGGTEVVEAKAGAGSATLSM-AYAAVKFADACLRGLRGDAGVVECAFVASQVTEL 281
           T     G        A   S+  S    A     D  L        +   +  +  + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 282 PFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL 319
             F   V       + +  L  ++ + +  +     EL
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNEL 159

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 79.3 bits (195), Expect = 2e-18
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 32/167 (19%)

Query: 22  KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 76
           ++A++G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA----------- 125
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISD-TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 126 --------KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
                   +   NAT+   +NP         E  +     + +K +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 73.2 bits (179), Expect = 3e-16
 Identities = 26/161 (16%), Positives = 42/161 (26%), Gaps = 30/161 (18%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTGAV 72
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI-------- 124
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 125 ------------AKCCPNATVNLISNPVNSTVPIAAEVFKK 153
                        + CP+A +   +NP            K+
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ 162

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 73.1 bits (179), Expect = 3e-16
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 30/162 (18%)

Query: 21  FKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTGAV 72
           F + I G  G    P   L +L  +    +  L LYD      +      D+   +    
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPD 62

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA------- 125
           +         E A T +D V+    V +      D+   +  G+V     G         
Sbjct: 63  IEFA-ATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 126 -------------KCCPNATVNLISNPVNSTVPIAAEVFKKA 154
                        K  P+A +   SNP          +   +
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.7 bits (162), Expect = 5e-14
 Identities = 25/166 (15%), Positives = 41/166 (24%), Gaps = 34/166 (20%)

Query: 20  GFKVAILGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTGAV 72
             K+ I+GA G     L +   L K   L  S + L D+       +        +    
Sbjct: 2   SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI-------------------- 112
              F     L++ +   D VI  A V     + +                          
Sbjct: 61  DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120

Query: 113 ------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK 152
                        +   I K  P A     +NP+     +      
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.7 bits (152), Expect = 1e-12
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 12/160 (7%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
             LD  R    +      + R     ++G H G ++    S          E  E   N 
Sbjct: 2   NQLDSQRLKERLYNAGARNIRRA--WIIGEH-GDSMFVAKSLADFDGEVDWEAVE---ND 55

Query: 226 IQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFA 285
           ++    EV++     G+     A A  +   A +                  +  +    
Sbjct: 56  VRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 286 SKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQK 325
              +LG+ GAE +  +  L++ E   L  + K L   +++
Sbjct: 112 VPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE 149

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.98
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.98
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.98
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.97
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.97
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.97
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.97
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.97
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.97
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.97
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.96
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.96
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.96
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.96
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.96
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.96
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.96
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.95
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.95
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.95
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.94
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.93
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.93
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.91
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.91
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.56
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.11
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.95
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.86
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.58
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.57
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.53
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.49
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.45
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.44
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.41
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.4
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.4
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.39
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.33
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.32
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.28
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.25
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.17
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.14
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.11
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.11
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.09
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.08
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.05
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.05
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.05
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.01
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.99
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.95
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.94
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.9
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.85
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.85
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	97.79
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.78
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.75
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.75
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.75
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.69
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.68
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.64
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.64
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.63
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.63
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.6
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.59
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.54
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.48
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.46
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	97.41
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.4
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.4
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.4
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.39
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.36
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.36
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.35
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.32
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.31
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.31
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.3
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.29
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.28
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.25
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.24
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.22
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.22
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.21
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.2
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.2
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.18
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.17
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.17
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.17
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.14
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.11
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.1
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.09
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.09
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.07
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.06
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.05
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.04
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.01
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.0
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.96
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	96.96
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.95
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.93
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.9
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.87
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.86
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.84
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.83
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.79
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.71
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.71
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.69
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.68
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.68
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.67
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.66
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.66
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.65
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.65
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.65
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.65
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	96.61
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.59
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.56
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.55
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.55
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.54
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.51
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.5
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.47
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.47
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.43
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.4
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.37
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	96.35
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.34
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.28
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.25
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.17
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.14
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.04
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.03
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.02
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.0
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.94
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.91
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.9
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.89
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.87
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.78
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.73
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.68
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.66
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.65
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.61
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.6
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.6
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.57
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.54
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.53
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.52
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.51
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.51
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.44
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.41
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.4
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.39
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.37
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.36
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.36
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.32
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.29
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.27
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.27
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.24
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.23
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.21
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	95.17
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.17
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.1
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.05
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.03
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.03
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.03
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.95
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.86
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.72
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	94.7
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.68
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.65
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.64
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.61
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	94.59
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.51
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.42
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.41
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.37
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	94.31
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.29
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.29
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.25
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	94.24
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.22
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.21
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.19
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.18
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.08
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	94.07
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.96
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.93
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.92
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.87
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.83
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.77
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.76
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.76
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.73
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.73
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.7
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.65
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.63
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	93.52
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.51
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.47
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	93.47
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.46
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.45
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.42
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.34
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.32
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	93.31
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.28
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.22
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.14
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	92.97
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.72
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.54
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.4
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.4
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.38
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.27
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	92.0
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	91.98
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.96
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.9
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.8
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	91.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.65
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	91.56
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	91.56
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	91.52
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.51
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	91.49
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.48
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.45
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	91.31
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.27
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.76
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	90.69
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.69
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	90.01
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	89.97
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.92
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	89.79
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	89.71
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	89.61
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.54
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.26
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.96
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.61
d1ls1a2	207	GTPase domain of the signal sequence recognition p	88.44
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.24
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	88.21
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	88.12
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	87.96
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	87.87
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.82
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.78
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	87.76
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.6
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.46
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.44
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	87.4
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.89
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	86.8
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.77
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	86.65
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	86.35
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	86.2
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	85.89
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.81
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	85.63
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	85.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.18
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.15
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.01
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	84.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	84.7
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	83.85
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.75
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.51
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.25
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	83.06
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	82.71
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	82.15
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	81.85
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.51
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	81.43
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.07
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	80.45
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	80.12

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.1e-34  Score=237.26  Aligned_cols=143  Identities=64%  Similarity=1.084  Sum_probs=133.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  101 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~~  101 (332)
                      ||+||||+|+||+++|+.|+.+++.+||+|+|+++.+++++|+.|.........+..+.+++++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999988899999999987666655544456778999999999999999999


Q ss_pred             CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049          102 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus       102 ~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      +|++|.+++..|.++++++++.+.+++|+++++++|||+|++|+++++++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999988899999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-33  Score=233.11  Aligned_cols=143  Identities=59%  Similarity=0.970  Sum_probs=131.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+||||+|+||+++|+.|+.+ +...||+|+|+++ ++|+++||.|.........+.++++ +++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCc
Confidence            79999996699999999988754 7888999999987 7899999999876666666655666 5789999999999999


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |+++|++|.|++..|.+++++++++|.+++|++++|++|||+|+++++++++++++++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=9.9e-34  Score=232.78  Aligned_cols=139  Identities=27%  Similarity=0.418  Sum_probs=124.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |.||+|||| |+||+++|+.++.+++.+||+|+|+++  ++|+++||.|.... ...... .+++ +++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~-~~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDD-PEICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCC-HHHhhCCcEEEEec
Confidence            569999999 999999999999999999999999998  78999999998532 222222 2346 47899999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |.|+++|++|.|++..|.++++++++.|.+++|++++|++|||+|+||+++    ++.+|||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~----~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA----QKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH----HHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH----HHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999998764    78899999999997

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7.3e-33  Score=227.50  Aligned_cols=136  Identities=28%  Similarity=0.503  Sum_probs=123.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||| |+||+++|+.|+.+++.+||+|+|+++  ++|+++||.|...    .+++..   ++| +++++|||+||+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~---~~d-~~~~~~adiVvi   75 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc---CCC-HHHhccccEEEE
Confidence            79999998 999999999999999999999999998  7899999999742    233433   456 488999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ++|.|+++|++|.+++.+|.++++++++.+.+++|+++++++|||+|++|+++    ++++|||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViG~  142 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM----WKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH----HHHSCCCTTSEEEC
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH----HHHHCCChhcEecC
Confidence            99999999999999999999999999999999999999999999999998764    78899999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.98  E-value=4.3e-33  Score=230.70  Aligned_cols=139  Identities=24%  Similarity=0.330  Sum_probs=124.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      ...||+|||| |+||+++|+.|+..++.+||+|+|+++  ++|+++||.|....  ..+...  +.| +++++|||+||+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d-~~~l~daDvvvi   80 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGD-YDDCRDADLVVI   80 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECC-GGGTTTCSEEEE
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECC-HHHhccceeEEE
Confidence            3469999998 999999999999999999999999988  78999999997542  233433  346 588999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ++|.|+++|++|.|++.+|.++++++++.|.++||++++|++|||+|++|+++    ++.+|||++||||+
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~----~k~sg~p~~rViG~  147 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT----WKFSGLPHERVIGS  147 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH----HHHHTCCGGGEEEC
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH----HHHHCcChhheecC
Confidence            99999999999999999999999999999999999999999999999998764    78899999999996

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.98  E-value=2.7e-32  Score=224.17  Aligned_cols=137  Identities=29%  Similarity=0.391  Sum_probs=116.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      .||+|||| |+||+++++.++..++.+||+|+|+++  ++|+++||.|... ......+  +.+ +++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCc-HHHhCCCceEEEecc
Confidence            48999999 999999999999999999999999988  6899999999753 2344433  345 588999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      .++++|++|.+++.+|.++++++++.|.+++|++++|++|||+|++|+++    ++.+|||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~----~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI----QKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH----HHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999998764    78899999999996

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.98  E-value=1.1e-32  Score=226.19  Aligned_cols=137  Identities=29%  Similarity=0.500  Sum_probs=122.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      |||+|||| |+||+++++.++..++.+||+|+|+++  ++++++|+.|... .......  ++| +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCc-HHHhcCCCEEEEecc
Confidence            79999998 999999999999999999999999988  7899999998642 2233333  345 578999999999999


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      .|+++|++|.|++.+|.++++++++.|.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~----~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF----LKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999998764    78889999999995

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.97  E-value=2.7e-32  Score=227.72  Aligned_cols=139  Identities=22%  Similarity=0.338  Sum_probs=124.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      .+..||+|||+ |.||+++|+.|+..++.+||+|+|+++  ++|+++||.|....  .....  ...| +++++|||+||
T Consensus        18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~--~~~d-~~~~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIV--ADKD-YSVTANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEE--ECSS-GGGGTTCSEEE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEE--eccc-hhhcccccEEE
Confidence            34569999999 999999999999999999999999987  78999999997532  22222  2456 58899999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      +++|.++++|++|++++..|.++++++++.|.+++|++++|++|||+|++|+++    ++.+|||++||||
T Consensus        94 itAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~----~k~sglp~~rViG  160 (160)
T d1i0za1          94 VTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT----WKLSGLPKHRVIG  160 (160)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             EecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999998764    7888999999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=6.5e-32  Score=222.23  Aligned_cols=136  Identities=33%  Similarity=0.548  Sum_probs=122.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      |||+|||| |+||+++++.|+..++.+||+|+|+++  +++.++|+.|...    ..++..   ++| +++++|||+||+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~---~~~-~~~~~dadvvvi   75 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SND-YADTANSDIVII   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe---cCC-HHHhcCCeEEEE
Confidence            79999998 999999999999999999999999998  6788899988742    233432   346 588999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ++|.|+++|++|.+++.+|.++++++++.+.++||++|++++|||+|++|+++    ++.+|||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~----~~~sg~p~~rviG~  142 (142)
T d1guza1          76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA----WVRSGLPKERVIGM  142 (142)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH----HHHHCSCGGGEEEE
T ss_pred             EEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH----HHHhCCChHhEeeC
Confidence            99999999999999999999999999999999999999999999999998764    67789999999996

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.97  E-value=7.5e-33  Score=228.37  Aligned_cols=137  Identities=18%  Similarity=0.244  Sum_probs=115.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC--CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||| |+||+++|+.|+.++..+||+|+|+++  ++|+++||.|....  ......  +.| +++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--IND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccC-HHHhccccEEEEec
Confidence            59999998 999999999999999889999999988  68999999987532  233332  346 57899999999999


Q ss_pred             CCCC----CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           97 GVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        97 g~~~----~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |.++    ++|++|.|++..|.++++++++.+.++||++|+|++|||+|++|+++    ++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF----QHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH----HHHhCCCccceeCc
Confidence            9876    67899999999999999999999999999999999999999998764    78899999999995

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=5.7e-32  Score=221.69  Aligned_cols=137  Identities=28%  Similarity=0.392  Sum_probs=120.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCC-CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .||+||||+|+||+++|+.|+.+++..||+|+|++.    ++|+++||.|... ....+..  +.+ +++++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~--~~~-~~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR--QGG-YEDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE--ECC-GGGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe--eCC-HHHhhhcCEEEEe
Confidence            389999966999999999999999999999999764    5689999998532 2233333  235 5789999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      +|.|+++|++|.|++..|+++++++++.|.+++|+++++++|||+|++|++    +++++|||++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~----~~k~sg~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRH----LYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHH----HHHHSSSCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHH----HHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999999865    47899999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=3.8e-32  Score=224.24  Aligned_cols=138  Identities=25%  Similarity=0.394  Sum_probs=113.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||+|||+ |+||+++|+.|++.++..||+|+|+++  ++|+++|+.|.... ......  ++|+ ++++|||+||+++
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivvita   80 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVVITA   80 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEEEec
Confidence            479999998 999999999999999989999999998  78999999997532 222323  3464 7799999999999


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |.|+++|++|.+++..|.++++++++.|.+++|++++|++|||+|++|+++    ++.+|||++||||+
T Consensus        81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~----~k~sg~p~~rViG~  145 (146)
T d1ez4a1          81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT----WKFSGFPKERVIGS  145 (146)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH----HHHHCcCccceecC
Confidence            999999999999999999999999999999999999999999999998764    78899999999996

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=3.8e-31  Score=223.89  Aligned_cols=167  Identities=53%  Similarity=0.837  Sum_probs=144.4

Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +|.||++||++++|++||++|++|+++|+|+||+.+++|+||.+.++..+..++++++.+++++++++|++.+.+.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            47899999999999999999999999999999775889999998888888899999999999999999999876667778


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  324 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~  324 (332)
                      ++++.++++++.+++.+..+...+.+++.....+.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  160 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIK  160 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88899999999998876543334544443221224689999999999999999999767999999999999999999999


Q ss_pred             Hhhhhhc
Q 020049          325 KGISFSK  331 (332)
Q Consensus       325 ~~~~~~~  331 (332)
                      +|++|++
T Consensus       161 ~g~~fi~  167 (169)
T d1mlda2         161 KGEEFVK  167 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9999986

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.9e-32  Score=225.15  Aligned_cols=140  Identities=24%  Similarity=0.370  Sum_probs=124.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCC--eEEEEeCCCCHHhhcCCCcEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ..+..||+|||| |.||+++|+.|+..++..||+|+|+++  ++|+++||.|.....  .....  +.| ++++++||+|
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~--~~d-~~~~~~adiv   91 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF--GKD-YNVSANSKLV   91 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE--ESS-GGGGTTEEEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEe--ccc-hhhhccccEE
Confidence            344569999998 999999999999999999999999987  789999999986421  22222  346 5789999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |+++|.|+++|++|.|++..|+++++++++.+.+++|+++++++|||+|++|+++    ++.+|||++||||
T Consensus        92 vitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~----~k~sg~p~~rV~G  159 (159)
T d2ldxa1          92 IITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV----WKISGFPVGRVIG  159 (159)
T ss_dssp             EECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH----HHHHCSCTTTEEE
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH----HHHHCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999998764    7889999999998

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=2.2e-31  Score=219.16  Aligned_cols=137  Identities=31%  Similarity=0.471  Sum_probs=119.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----cHHHHHHHhcCCC--C--CeEEEEeCCCCHHhhcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDT--G--AVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~--~--~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      |||+||||+|+||+++|+.|+..++..||+|+|+++    ++|+++|+.|...  .  .++... .+.| +++++|||+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-~~~d-~~~l~~aDvV   78 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVE-SDEN-LRIIDESDVV   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEE-ETTC-GGGGTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccC-Ccch-HHHhccceEE
Confidence            799999977999999999999999999999999986    4688999998532  2  233332 2445 5899999999


Q ss_pred             EEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        93 i~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |+|||.|+++|++|.|++..|.++++++++.+.+++|++++ ++|||+|+|++++    ++.+|||++||||
T Consensus        79 VitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD~mt~~~----~k~sg~p~~rViG  145 (145)
T d1hyea1          79 IITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVDVMTYKA----LVDSKFERNQVFG  145 (145)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHHHHHHHH----HHHHCCCTTSEEE
T ss_pred             EEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999998864 5899999998764    7889999999998

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.97  E-value=5.5e-31  Score=217.63  Aligned_cols=145  Identities=18%  Similarity=0.251  Sum_probs=128.8

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCC-ceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      |.|||+||++.|++...   .++ +++|+|+||+ +++|+||.+++....   +++++.+++++.+++|++   +||+++
T Consensus         2 t~LDsaR~r~~l~~~~~---~~v~~a~ViGeHGd-s~vp~~S~~~i~g~~---~~~~i~~~v~~~g~eIi~---~kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGA---RNIRRAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIK---RKGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC---BSCCCCCEEBCSST-TCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHH---HHSSCC
T ss_pred             CccHHHHHHHHHHccCC---CCcceeEEEecCCC-ccccccccccccCcc---chhHhHHHHHHHHHHhhh---hcccee
Confidence            57999999999987654   445 8999999999 999999999985433   467899999999999998   468999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGS  322 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~  322 (332)
                      ||+|.++++++++|++|++   .++|++ +++|+| .+++|+|+||+||++|++ ++++ +|+++|+++|++|++.|++.
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~~  146 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRER  146 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999976   588886 789999 679999999999999984 8885 99999999999999999998


Q ss_pred             HHH
Q 020049          323 IQK  325 (332)
Q Consensus       323 ~~~  325 (332)
                      ++.
T Consensus       147 i~~  149 (152)
T d1ojua2         147 LEE  149 (152)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            875

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-30  Score=220.65  Aligned_cols=167  Identities=53%  Similarity=0.792  Sum_probs=145.7

Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCCCCHHHHHHHHHHHhccchhhhhcccCCCchh
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~~kg~~~  244 (332)
                      +|.||++|+++++|+++|++|++|+++|+|+||+.+++|++|.+.. ..+++.+++++.+++++++.++++.+.|++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            4789999999999999999999999999999998667777676553 457888899999999999999999887888999


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 020049          245 LSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  324 (332)
Q Consensus       245 ~s~a~a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~  324 (332)
                      ||+|.++++++++|+.+.++...+..+++....+++++|||+||++|++|+++++++++|+++|+++|++|+++|++.++
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I~  159 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIA  159 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988765544543344443346689999999999999999999757999999999999999999999


Q ss_pred             HhhhhhcC
Q 020049          325 KGISFSKK  332 (332)
Q Consensus       325 ~~~~~~~~  332 (332)
                      +|++|+++
T Consensus       160 ~~~~fi~~  167 (167)
T d2cmda2         160 LGQEFVNK  167 (167)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999986

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.97  E-value=7.6e-31  Score=220.73  Aligned_cols=153  Identities=28%  Similarity=0.471  Sum_probs=139.4

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----CCCHHHHHHHHHHHhccchhhhhcccCCC
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  241 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~i~~~~~~kg  241 (332)
                      +||++||++++|+++|++|++|+++|||+||+ +++|+||++++++     .++++.++++.++++++++++++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999999 9999999999854     2566778899999999999998854 789


Q ss_pred             chhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 020049          242 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  319 (332)
Q Consensus       242 ~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l  319 (332)
                      ++.|++|.++.+++++++.+++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999876   467775 789998 67999999999999999999996 99999999999999999


Q ss_pred             HHHHHH
Q 020049          320 AGSIQK  325 (332)
Q Consensus       320 ~~~~~~  325 (332)
                      ++.++.
T Consensus       157 ~~~i~~  162 (163)
T d1guza2         157 DENCKM  162 (163)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            988864

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=8.5e-31  Score=220.67  Aligned_cols=153  Identities=29%  Similarity=0.447  Sum_probs=139.7

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----CCCHHHHHHHHHHHhccchhhhhcccCCC
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  241 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~~~~l~~~v~~~~~~i~~~~~~kg  241 (332)
                      +||++||++++|+++|++|++|+++|||+||+ +++|+||.+++++     .+++..++++.+++++++++|++++ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            69999999999999999999999999999999 9999999998753     2466778999999999999998865 789


Q ss_pred             chhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHH
Q 020049          242 SATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKEL  319 (332)
Q Consensus       242 ~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l  319 (332)
                      ++.|++|.++++++++|+.+++   .+++++ +++|+| .++++||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999876   477665 789999 67899999999999999999996 99999999999999999


Q ss_pred             HHHHHH
Q 020049          320 AGSIQK  325 (332)
Q Consensus       320 ~~~~~~  325 (332)
                      ++.++.
T Consensus       157 k~~i~~  162 (164)
T d1uxja2         157 RATLDT  162 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999875

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.97  E-value=8.3e-31  Score=222.16  Aligned_cols=158  Identities=18%  Similarity=0.328  Sum_probs=143.5

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  235 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~  235 (332)
                      |.||++|++.++|+++|++|++|+++|||+||+ +++|+||++++.+          .+..+++.++.+.++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999999 9999999998753          25666788899999999999988


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          236 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       236 ~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                         +++++.|++|.++.+++++++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ---~k~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 ---LKGATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             ---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ---hhhhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence               4589999999999999999999875   466664 789999 77999999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhhhc
Q 020049          314 KAKKELAGSIQKGISFSK  331 (332)
Q Consensus       314 ~sa~~l~~~~~~~~~~~~  331 (332)
                      +|++.|++.++++++.++
T Consensus       153 ~s~~~l~~~i~~~l~~l~  170 (171)
T d1ez4a2         153 DSAATLKKVLNDGLAELE  170 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999999999999998875

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=1.2e-30  Score=222.71  Aligned_cols=161  Identities=22%  Similarity=0.261  Sum_probs=138.9

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEE-EecCCCceeecccCCCCCC-C----------CCHHHHHHHHHHHhccchhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVV-GGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEV  233 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~-G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i  233 (332)
                      |.||++||++++|+++||+|++|+++|+ |+||+ ++||+||++++++ +          +.....+++.+.++++++.|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999987555 99999 9999999999853 1          12234578889999999999


Q ss_pred             hhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeC-CC--CCccEEEEeEEEcCCceEEeccCCCCCHHHH
Q 020049          234 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVAS-QV--TELPFFASKVRLGRQGAEEIFQLGPLNEYER  309 (332)
Q Consensus       234 ~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g-~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~  309 (332)
                      ++.+  ++++.|++|.++++++++|+++.+... ++++ ++++| +|  ++++|||+||++|++|++++.++ +|+++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            8854  467789999999999999999987543 4444 46776 57  68999999999999999999996 9999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhc
Q 020049          310 IGLEKAKKELAGSIQKGISFSK  331 (332)
Q Consensus       310 ~~l~~sa~~l~~~~~~~~~~~~  331 (332)
                      ++|++|++.|+++++.++++++
T Consensus       156 ~~l~~Sa~~L~~~~~~~~~~l~  177 (179)
T d5mdha2         156 EKMDLTAKELAEEKETAFEFLS  177 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999986

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1.6e-30  Score=216.51  Aligned_cols=138  Identities=34%  Similarity=0.594  Sum_probs=122.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      +++||+|||| |.||+++|+.|++.++. ||+|+|+++  ++|+++|+.|...    ...+..   +++++++++|||+|
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~adiV   80 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGADCV   80 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTCSEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCchhhhhcCCCeE
Confidence            4579999999 99999999999888864 999999998  7899999998631    223332   45778899999999


Q ss_pred             EEcCCCCCCCCC-----ChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           93 IIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        93 i~~~g~~~~~g~-----~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      |+++|.++++|+     +|.+++..|.++++++++.+.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        81 vitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~----~~~sg~p~~rViG~  154 (154)
T d1pzga1          81 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM----CEASGVPTNMICGM  154 (154)
T ss_dssp             EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             EEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH----HHHhCcChhcEecC
Confidence            999999999985     8999999999999999999999999999999999999998764    78889999999996

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.97  E-value=2.3e-30  Score=219.25  Aligned_cols=152  Identities=17%  Similarity=0.337  Sum_probs=136.5

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-------------CCCHHHHHHHHHHHhccchh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-------------SFTQEETEYLTNRIQNGGTE  232 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-------------~~~~~~~~~l~~~v~~~~~~  232 (332)
                      |.||++|+++++|+++|+++++|+++|||+||+ +++|+||.+++++             .++...++++.+++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            689999999999999999999999999999999 9999999987632             13456678999999999999


Q ss_pred             hhhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 020049          233 VVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERI  310 (332)
Q Consensus       233 i~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~  310 (332)
                      |++   +||++.|++|.++++++++|+.+..   .+++++ +++|+| ++++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            998   5689999999999999999999875   466665 788998 67999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 020049          311 GLEKAKKELAGSIQK  325 (332)
Q Consensus       311 ~l~~sa~~l~~~~~~  325 (332)
                      +|++|++.||+.+++
T Consensus       153 ~l~~sa~~lk~~~~~  167 (170)
T d1llda2         153 ALKRSAETLKETAAQ  167 (170)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988753

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=3.4e-31  Score=219.27  Aligned_cols=138  Identities=30%  Similarity=0.507  Sum_probs=119.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ..||+|||+ |.||+++++.|+++++ .||+|+|+++  ++|+++|+.|...  ........ +.+ +++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~-~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT-YDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC-GGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-ccc-ccccCCCcEEEEe
Confidence            469999998 9999999998888886 5999999988  7899999999742  22222221 234 6889999999999


Q ss_pred             CCCCCCCCCC-----hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           96 AGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        96 ~g~~~~~g~~-----r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      +|.++++|++     |++++..|.++++++++.+.++||+++++++|||+|++|+++    ++.+|||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~----~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH----HHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH----HHHHCCCchheecc
Confidence            9999999876     999999999999999999999999999999999999998764    78899999999997

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=7.4e-30  Score=216.87  Aligned_cols=158  Identities=27%  Similarity=0.432  Sum_probs=135.1

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  235 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~  235 (332)
                      |+||++|+++++|+++|++|++|+++|||+||+ +++|+||++++.+          .....++.+.....+.++..++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            799999999999999999999999999999999 9999999998753          12344556666666777777766


Q ss_pred             cccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          236 AKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       236 ~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                      .+ ++|++.|++|.++++++++|+++++   .+++++ +++|+| .+++|||+||+||++|+++++++ +|+++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            44 7899999999999999999999875   477776 678999 56899999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q 020049          314 KAKKELAGSIQKGISFS  330 (332)
Q Consensus       314 ~sa~~l~~~~~~~~~~~  330 (332)
                      +|++.|++..+ .++.+
T Consensus       156 ~s~~~l~~~~~-~v~~l  171 (174)
T d1pzga2         156 KSVDDVMALNK-AVAAL  171 (174)
T ss_dssp             HHHHHHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHH-HHHhc
Confidence            99999997654 44444

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=1e-29  Score=217.95  Aligned_cols=160  Identities=18%  Similarity=0.153  Sum_probs=134.5

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCCCceeecccCCCCCC-----CCCHHH--HHHHHHHHhccchhhhhcc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-----SFTQEE--TEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~s~~~v~~-----~~~~~~--~~~l~~~v~~~~~~i~~~~  237 (332)
                      |.||++||+.+||+++||+|++|+ .+|||+||+ ++||+||.+++..     ..+++.  ++++.+.++++++++++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            679999999999999999999996 568899999 9999999998753     133444  4789999999999999964


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCC-C--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQ-V--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       238 ~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~-~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                        ++++.+|+|.|+++++++|+++++... ++++. +++|+ |  ++++|||+||+||++|+++++...+|+++|+++|+
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~~-~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~  156 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEGD-WFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK  156 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTTC-CEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCCc-eEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence              345567799999999999999987543 55554 67886 8  47999999999999999999753499999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 020049          314 KAKKELAGSIQKGISF  329 (332)
Q Consensus       314 ~sa~~l~~~~~~~~~~  329 (332)
                      +|+++|+++.+....+
T Consensus       157 ~S~~eL~~e~~~v~~L  172 (188)
T d7mdha2         157 KSEAELLAEKKCVAHL  172 (188)
T ss_dssp             HHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999887655433

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.96  E-value=3.6e-30  Score=211.49  Aligned_cols=134  Identities=28%  Similarity=0.523  Sum_probs=111.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC----CCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +||+|||+ |+||+++|+.|+.+++. +++|+|+++  ++++++|+.|...    ...+..   ++| +++++|||+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d-~~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNN-YADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCc-HHHhcCCCEEEE
Confidence            49999998 99999999999988874 899999988  6899999999852    233443   356 477999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      ++|.|+++|++|.|++..|.++++++++.+.+++|+++++++|||+|++||++    ++.+|||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~----~~~sglp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA----AEVSGFPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH----HHHHCCCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH----HHHHCcCcccccC
Confidence            99999999999999999999999999999999999999999999999999875    6788999999998

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=1.1e-29  Score=215.42  Aligned_cols=156  Identities=24%  Similarity=0.364  Sum_probs=139.4

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-----------CCCHHHHHHHHHHHhccchhhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV  234 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~  234 (332)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||.+++..           .+..+.++++.+.++..+++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            689999999999999999999999999999999 9999999988642           2556677899999999999998


Q ss_pred             hcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 020049          235 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  312 (332)
Q Consensus       235 ~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l  312 (332)
                      .   +++++.|++|.++++++.+++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        81 ~---~~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 E---RKGATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             H---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             e---ccccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            8   4588999999999999999999865   466665 678888 67999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 020049          313 EKAKKELAGSIQKGISF  329 (332)
Q Consensus       313 ~~sa~~l~~~~~~~~~~  329 (332)
                      ++|++.|++.++...+.
T Consensus       154 ~~sa~~lk~~i~~l~~~  170 (172)
T d1a5za2         154 RKSASILKNAINEITAE  170 (172)
T ss_dssp             HHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999886654

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.96  E-value=4.9e-30  Score=217.02  Aligned_cols=153  Identities=19%  Similarity=0.336  Sum_probs=134.9

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----C--------CCHHHHHHHHHHHhccchhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEV  233 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~--------~~~~~~~~l~~~v~~~~~~i  233 (332)
                      |.||++|+++++|+++|++|++|+++|||+||+ +++|+||+..+++    .        ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999999 9999999988642    1        22334578888999999998


Q ss_pred             hhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHH
Q 020049          234 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIG  311 (332)
Q Consensus       234 ~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~  311 (332)
                      +.   +++++.|++|.++++++++++.|.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++
T Consensus        80 ~~---~~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IK---NKGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HH---HTSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hh---hhhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            88   5689999999999999999999975   477775 789999 56999999999999999999996 999999999


Q ss_pred             HHHHHHHHHHHHHHh
Q 020049          312 LEKAKKELAGSIQKG  326 (332)
Q Consensus       312 l~~sa~~l~~~~~~~  326 (332)
                      |++|++.|++.++..
T Consensus       153 l~~s~~~lk~~~~~v  167 (169)
T d1y6ja2         153 LRFSAEQVKKVLNEV  167 (169)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998764

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.96  E-value=2.3e-29  Score=212.00  Aligned_cols=152  Identities=26%  Similarity=0.382  Sum_probs=136.3

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----------CCCHHHHHHHHHHHhccchhhhhc
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEA  236 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~  236 (332)
                      +||+.|+++++|+++|++|++|+++|||+||+ +++|+||..++..          ...++++.++.+.++++++++++ 
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN-   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh-
Confidence            68999999999999999999999999999999 9999999987642          34566778899999999999988 


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          237 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       237 ~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                        +++++.|++|.+++.++++++.+++   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++
T Consensus        80 --~~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          80 --LHASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             --HTSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             --hccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence              5688999999999999999999976   366664 889999 77999999999999999999996 999999999999


Q ss_pred             HHHHHHHHHHHh
Q 020049          315 AKKELAGSIQKG  326 (332)
Q Consensus       315 sa~~l~~~~~~~  326 (332)
                      |++.|++..+.|
T Consensus       154 s~~~lk~~~~~A  165 (165)
T d1t2da2         154 AIAETKRMKALA  165 (165)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999887653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=5.3e-29  Score=211.11  Aligned_cols=144  Identities=22%  Similarity=0.317  Sum_probs=123.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~-----~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~   88 (332)
                      .++.||+|+||+|++|+++++.|++++.+     .+|+|+|+++    +++.++|+.|+.. +.+.....+++.+++++|
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-~~~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-PLLREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-ccccCccccccchhhccC
Confidence            45679999999899999999999987543     3899999877    4788899999875 333332224567899999


Q ss_pred             CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~  165 (332)
                      ||+||+++|.|+++|++|.|++..|.++++++++.|.+||| +++|+++|||+|++|+++   ++.++++|++||+|+
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999997 899999999999999875   244699999999986

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=3e-29  Score=211.89  Aligned_cols=155  Identities=19%  Similarity=0.345  Sum_probs=129.5

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCC----C---CHHHHHHHHHHHhccchhhhhccc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----F---TQEETEYLTNRIQNGGTEVVEAKA  238 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~----~---~~~~~~~l~~~v~~~~~~i~~~~~  238 (332)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++.    +   ....++++.+.++++++.++.   
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---   78 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHH---
Confidence            789999999999999999999999999999999 99999999987531    1   112356788888888888877   


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 020049          239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVEC-AFVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  315 (332)
Q Consensus       239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  315 (332)
                      .++++.|++|.+++.++++++++.+   .++++ +++.|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|
T Consensus        79 ~k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          79 LKGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             hccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence            4578889999999999999999875   35554 5778776  67999999999999999999996 9999999999999


Q ss_pred             HHHHHHHHHHhhh
Q 020049          316 KKELAGSIQKGIS  328 (332)
Q Consensus       316 a~~l~~~~~~~~~  328 (332)
                      ++.|++.++...+
T Consensus       155 a~~lk~~~~~~k~  167 (168)
T d1hyea2         155 AEIIKKYCEEVKN  167 (168)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988754

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=1.1e-28  Score=206.77  Aligned_cols=154  Identities=25%  Similarity=0.392  Sum_probs=137.3

Q ss_pred             EEeehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC---CCCHHHHHHHHHHHhccchhhhhcccC
Q 020049          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC---SFTQEETEYLTNRIQNGGTEVVEAKAG  239 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~---~~~~~~~~~l~~~v~~~~~~i~~~~~~  239 (332)
                      || |+||++|+++++|+++|++|++|+++|||+||+ +++|+||.+.+..   ....++++++.++++..+.++.+   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            45 899999999999999999999999999999999 9999999998743   35667788888999999999877   5


Q ss_pred             CCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHH
Q 020049          240 AGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKK  317 (332)
Q Consensus       240 kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~  317 (332)
                      ++++.+++|.++++++.+++.+.+   .+++++ +++++| +++++||+||++|++|+++++++ +|+++|+++|++|++
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhccc---cceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            688999999999999999999875   355554 788888 77999999999999999999996 999999999999999


Q ss_pred             HHHHHHHH
Q 020049          318 ELAGSIQK  325 (332)
Q Consensus       318 ~l~~~~~~  325 (332)
                      .|++.+++
T Consensus       152 ~L~~~~~~  159 (161)
T d1o6za2         152 KLSDQYDK  159 (161)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999876

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=4.7e-29  Score=207.70  Aligned_cols=143  Identities=22%  Similarity=0.354  Sum_probs=118.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~-----~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~   88 (332)
                      ++|+||+||||+|+||+++++.|++++++     .+++|+|+++    +++..+|+.++......... .+.+.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVI-ATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEE-EESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccc-cCcccccccCC
Confidence            36899999998899999999999876543     4899999987    34455566776543222222 23456899999


Q ss_pred             CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCc-EEEEecCCCCchHHHHHHHHHHhC-CCCCCceEEe
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a-~viv~tNP~~~~t~~~~~~~~~~~-~~~~~kviG~  165 (332)
                      ||+||+++|.|+++|++|.|++..|.++++++++.|.++||++ ++|++|||+|++|+++    ++.+ |+|++||+|+
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~----~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA----SKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH----HHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH----HHHcCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999999855 6888999999998765    6766 9999999986

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=5e-29  Score=210.34  Aligned_cols=154  Identities=18%  Similarity=0.350  Sum_probs=135.0

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC----C-------CCHHHHHHHHHHHhccchhhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVV  234 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~----~-------~~~~~~~~l~~~v~~~~~~i~  234 (332)
                      |.||++||+.++|+++|++|++|+++|||+||+ +++|+||++++++    .       ......+++.+.++..+..+.
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999999 9999999988742    1       112345678888888888887


Q ss_pred             hcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 020049          235 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  312 (332)
Q Consensus       235 ~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l  312 (332)
                      .   .++++.|+++.++.+++.+++.+.+   .+++++ +++++| ++++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 E---KKGATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             H---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             H---hhccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            7   4578999999999999999999865   466665 678989 77999999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 020049          313 EKAKKELAGSIQKGI  327 (332)
Q Consensus       313 ~~sa~~l~~~~~~~~  327 (332)
                      ++|++.|++.+++|+
T Consensus       153 ~~s~~~lk~~i~~a~  167 (168)
T d1ldna2         153 HHSAATLKSVLARAF  167 (168)
T ss_dssp             HHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999876

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.96  E-value=1e-28  Score=207.54  Aligned_cols=155  Identities=20%  Similarity=0.262  Sum_probs=133.5

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----CC--HHHHHHHHHHHhccchhhhhccc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FT--QEETEYLTNRIQNGGTEVVEAKA  238 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----~~--~~~~~~l~~~v~~~~~~i~~~~~  238 (332)
                      |.||++||++++|+++|++|++|+++|||+||+ +++|+||++++++ +    ..  +..++++.+++++++++++.   
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~---   77 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---   77 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHH---
Confidence            679999999999999999999999999999999 9999999998753 1    12  22357999999999999988   


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEeeEEeCCCCCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHH
Q 020049          239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVASQVTELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKE  318 (332)
Q Consensus       239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~~~~g~~~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~  318 (332)
                      +||++.|++|.++..++.++..+.+   .+++++...+  ++++|||+||++|++|+++++++ +|+++|+++|++|++.
T Consensus        78 ~kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          78 GKGYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             HHHhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence            4589999999999999999999875   3555543211  45799999999999999999996 9999999999999999


Q ss_pred             HHHHHHHhhhhh
Q 020049          319 LAGSIQKGISFS  330 (332)
Q Consensus       319 l~~~~~~~~~~~  330 (332)
                      |++.++.+++.+
T Consensus       152 l~~~~~~~~~~l  163 (163)
T d1hyha2         152 IQQRFDEIVDTL  163 (163)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhC
Confidence            999999988753

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.96  E-value=6.7e-29  Score=210.45  Aligned_cols=151  Identities=18%  Similarity=0.249  Sum_probs=133.4

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC------------CCCHHHHHHHHHHHhccchhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEV  233 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~------------~~~~~~~~~l~~~v~~~~~~i  233 (332)
                      |.||++|+++++|+++|++|++|+++|||+||+ +++|+||+++++.            ......++++.+.++.++.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            689999999999999999999999999999999 9999999998743            122334678888999999999


Q ss_pred             hhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 020049          234 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERI  310 (332)
Q Consensus       234 ~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~  310 (332)
                      +.   +++++.|++|.++++++++++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~---~~~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IK---LKGYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HH---HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             ee---cccccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            88   4578999999999999999999865   478776 689999  56899999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHH
Q 020049          311 GLEKAKKELAGSIQ  324 (332)
Q Consensus       311 ~l~~sa~~l~~~~~  324 (332)
                      +|++|++.|++..+
T Consensus       155 ~l~~Sa~~l~~~~~  168 (172)
T d1i0za2         155 QLKKSADTLWDIQK  168 (172)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.1e-28  Score=205.42  Aligned_cols=142  Identities=26%  Similarity=0.464  Sum_probs=118.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEccCC----cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~e-----i~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      +|+||+||||+|+||+++++.|++.+++++     +.|+|.+.    ..+.++|+.+... +..+.+..+.+.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-PLLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-TTEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-ccccccccCCchhhhcccc
Confidence            578999999889999999999999876543     56666654    4677788888764 3333222234557999999


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      |+||+++|.++++|++|.|++..|.++++++++.+.++|| +++++++|||+|++|+++   +++++|||++|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            9999999999999999999999999999999999999996 799999999999999875   34569999999985

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.95  E-value=1.3e-28  Score=208.06  Aligned_cols=155  Identities=20%  Similarity=0.295  Sum_probs=130.1

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCCC---------CCHHHHHHHHHHHhccchhhhhc
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS---------FTQEETEYLTNRIQNGGTEVVEA  236 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~~---------~~~~~~~~l~~~v~~~~~~i~~~  236 (332)
                      |.||++|+++++|+++|++|++|+++|||+||+ +++|+||.+.+...         .....+.++..+++..+..+.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            689999999999999999999999999999999 99999999987431         1222234555566666666665 


Q ss_pred             ccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHH
Q 020049          237 KAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLE  313 (332)
Q Consensus       237 ~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~  313 (332)
                        +++++.|++|.++++++++++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence              4578899999999999999999975   477775 789998  56899999999999999999996 99999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 020049          314 KAKKELAGSIQKGISF  329 (332)
Q Consensus       314 ~sa~~l~~~~~~~~~~  329 (332)
                      +|++.|+ ++.+.++|
T Consensus       155 ~s~~~l~-~~~k~lkf  169 (169)
T d1ldma2         155 KSATTLW-DIQKDLKF  169 (169)
T ss_dssp             HHHHHHH-HHHHTCCC
T ss_pred             HHHHHHH-HHHHhcCC
Confidence            9999998 55566654

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.95  E-value=4.7e-30  Score=217.71  Aligned_cols=158  Identities=19%  Similarity=0.354  Sum_probs=137.9

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C----------CCHHHHHHHHHHHhccchhhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----------FTQEETEYLTNRIQNGGTEVV  234 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~  234 (332)
                      |.||++|+++++|+++|+++++|+++|||+||+ +++|+||.+++.+ +          +....++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999999 9999999987642 1          122234677778888899988


Q ss_pred             hcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC-CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHH
Q 020049          235 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV-TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGL  312 (332)
Q Consensus       235 ~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~-~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l  312 (332)
                      +   ++|++.|++|.++++++.+++.+.+   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCC---CCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCC---CccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   6789999999999999999999976   366664 789999 67899999999999999999996 9999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhc
Q 020049          313 EKAKKELAGSIQKGISFSK  331 (332)
Q Consensus       313 ~~sa~~l~~~~~~~~~~~~  331 (332)
                      ++|+++|++.++++++-++
T Consensus       153 ~~s~~~lk~~i~~~~~~~~  171 (172)
T d1llca2         153 QKSASQLKKVLTDAFAKND  171 (172)
T ss_dssp             HTTTTTTTTTTTTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999988877553

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.7e-27  Score=201.50  Aligned_cols=154  Identities=22%  Similarity=0.346  Sum_probs=130.5

Q ss_pred             ehhhHHHHHHHHHHHhCCCCCCCceeEEEecCCCceeecccCCCCCC-C-----------CCHHHHHHHHHHHhccchhh
Q 020049          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S-----------FTQEETEYLTNRIQNGGTEV  233 (332)
Q Consensus       166 ~~ld~~r~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~s~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i  233 (332)
                      |.||+.|+++++|+++|++|++|+++|||+|++ +++|+||.++++. +           ......+++...++..+..+
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            689999999999999999999999999999999 9999999998742 1           11223457777778777787


Q ss_pred             hhcccCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHH
Q 020049          234 VEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERI  310 (332)
Q Consensus       234 ~~~~~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~  310 (332)
                      ..   +++++.|++|.++..++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++|+++++++ +|+++|++
T Consensus        82 ~~---~k~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LD---MKGYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HH---HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hh---cccchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            76   4578999999999999999999865   466665 678998  57999999999999999999996 99999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 020049          311 GLEKAKKELAGSIQKGIS  328 (332)
Q Consensus       311 ~l~~sa~~l~~~~~~~~~  328 (332)
                      +|++|++.|++ +.+.++
T Consensus       155 ~l~~s~~~lk~-~~k~l~  171 (172)
T d2ldxa2         155 LLKKSADTLWN-MQKNLE  171 (172)
T ss_dssp             HHHHHHHHHHH-HTSCSC
T ss_pred             HHHHHHHHHHH-HHHhcC
Confidence            99999999985 444443

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.5e-26  Score=195.99  Aligned_cols=157  Identities=21%  Similarity=0.224  Sum_probs=126.2

Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCcee-EEEecCCCceeecccCCCCCC----CC-CHH-HHHHHHHHHhccchhhhhcc
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPC----SF-TQE-ETEYLTNRIQNGGTEVVEAK  237 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~s~~~v~~----~~-~~~-~~~~l~~~v~~~~~~i~~~~  237 (332)
                      +|.||++||++++|+++|++|++|+++ |||+||+ +++|+||++++.+    .+ .+. ...+..++....+..++.. 
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA-   78 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHH-
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHH-
Confidence            478999999999999999999999876 5799999 9999999999853    12 222 2234444444455555443 


Q ss_pred             cCCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHH
Q 020049          238 AGAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEK  314 (332)
Q Consensus       238 ~~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~  314 (332)
                       .++++.|++|.+++.++++++.+.+.. .+++++ +++|+|  ++++++|+||+++++|++.+.++ +|+++|+++|++
T Consensus        79 -~~~~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          79 -RGASSAASAANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHHTBCCTT-CCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             -hccCchhhHHHHHHHHHHHHhcccCCC-CceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence             357888999999999999999987643 478876 689998  68999999999987666666665 999999999999


Q ss_pred             HHHHHHHHHHHh
Q 020049          315 AKKELAGSIQKG  326 (332)
Q Consensus       315 sa~~l~~~~~~~  326 (332)
                      |+++|++.++..
T Consensus       156 s~~~L~~~~e~v  167 (173)
T d1y7ta2         156 TAQELLDEMEQV  167 (173)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998854

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.93  E-value=9.8e-26  Score=190.60  Aligned_cols=158  Identities=15%  Similarity=0.126  Sum_probs=121.8

Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCce-eEEEecCCCceeecccCCCCCCC-----CCHH--HHHHHHHHHhccchhhhhccc
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPCS-----FTQE--ETEYLTNRIQNGGTEVVEAKA  238 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~s~~~v~~~-----~~~~--~~~~l~~~v~~~~~~i~~~~~  238 (332)
                      -||++|+++++|+++|++|++|+. +|||+||+ +++|+||.+++...     ..+.  ..+++.+.++.++..+...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            489999999999999999999976 77799999 99999999998541     1112  22455666666666666544 


Q ss_pred             CCCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC--CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 020049          239 GAGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV--TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  315 (332)
Q Consensus       239 ~kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~--~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  315 (332)
                      +++++.++.+.++..+.+++..+.+   .+++++ +++|+|  ++++|||+||++|++|++.+.++ +|+++|+++|++|
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i~~~~~---~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWVLGTAG---KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHCCTT---CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHhCCCc---cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            4445555555555555555555443   366665 789998  68999999999999999999997 8999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q 020049          316 KKELAGSIQKGISFS  330 (332)
Q Consensus       316 a~~l~~~~~~~~~~~  330 (332)
                      +++|+++++....++
T Consensus       156 ~~~L~~e~~~v~~ll  170 (171)
T d1b8pa2         156 LNELLEEQNGVQHLL  170 (171)
T ss_dssp             HHHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999987766543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=1.5e-26  Score=195.16  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=108.8

Q ss_pred             CCeEEEEcCCCchHHHH--HHHHHhCCC--CcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCCC
Q 020049           20 GFKVAILGAAGGIGQPL--AMLMKINPL--VSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGM   89 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~--a~~l~~~~~--~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~a   89 (332)
                      ++||+|||| |++|.+.  +..++....  ..||+|+|+++  .++.++|+.+..    .....+... ++|++++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~-~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL-TLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE-ESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee-cCCchhhcCCC
Confidence            369999999 9888653  445554432  46999999988  567888876542    122333322 46888999999


Q ss_pred             cEEEEcCCCCCCCCCChhhh--------------------HhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHH
Q 020049           90 DLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  149 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~--------------------~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~  149 (332)
                      |+||+++|.+++++++|.|+                    +.+|++++++++++|+++|||+|+|++|||+|++|+++  
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~--  156 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV--  156 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH--
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH--
Confidence            99999999987777666554                    46899999999999999999999999999999998764  


Q ss_pred             HHHHhCCCCCCceEEee
Q 020049          150 VFKKAGTYDPKKLLGVT  166 (332)
Q Consensus       150 ~~~~~~~~~~~kviG~~  166 (332)
                        ++.  +|++||||+|
T Consensus       157 --~k~--~p~~kviGlC  169 (169)
T d1s6ya1         157 --LRY--TKQEKVVGLC  169 (169)
T ss_dssp             --HHH--CCCCCEEECC
T ss_pred             --HHH--CCCCCEEeeC
Confidence              565  5889999997

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.91  E-value=2.8e-25  Score=186.54  Aligned_cols=136  Identities=20%  Similarity=0.225  Sum_probs=106.9

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~--~l~~~~--~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~   88 (332)
                      +..||+|||| |++|.+.+.  .+....  ..+||+|+|+++  +++.+.++.+..    ....+..   ++|++++++|
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eal~~   77 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA---TTDPEEAFTD   77 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe---cCChhhccCC
Confidence            4579999999 999987543  333332  247999999998  555566665542    2234443   4688999999


Q ss_pred             CcEEEEcCCCCCCCCCChhhhH--------------------hhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHH
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLF--------------------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~--------------------~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~  148 (332)
                      ||+||+++|.++++|++|.+++                    .+|+++++++++.|+++||+||+|++|||+|++|+++ 
T Consensus        78 AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~-  156 (167)
T d1u8xx1          78 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT-  156 (167)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH-
T ss_pred             CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH-
Confidence            9999999999998888887765                    4679999999999999999999999999999998764 


Q ss_pred             HHHHHhCCCCCCceEE
Q 020049          149 EVFKKAGTYDPKKLLG  164 (332)
Q Consensus       149 ~~~~~~~~~~~~kviG  164 (332)
                         ++.  +|++|||.
T Consensus       157 ---~k~--~P~~rVI~  167 (167)
T d1u8xx1         157 ---RRL--RPNSKILN  167 (167)
T ss_dssp             ---HHH--STTCCEEE
T ss_pred             ---HHH--CCcccccC
Confidence               566  59999974

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=6.1e-26  Score=190.21  Aligned_cols=137  Identities=16%  Similarity=0.217  Sum_probs=102.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-h-C--CCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMK-I-N--PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~-~-~--~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      |||+|||| |++|.+.+...+ . .  ...+||+|+|+++ ..+.+.|+.+........... +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999999 999988875432 2 2  2357999999998 334456666553222222222 45678999999999999


Q ss_pred             CCCCCCCCCChhhhH--------------------hhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           96 AGVPRKPGMTRDDLF--------------------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~--------------------~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      +|.+++++++|.+.+                    .++++.+.++.+ +.++||++|+|++|||+|++|+++    ++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~----~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV----RNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH----HHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH----HHh-
Confidence            999887777665554                    456677777765 778899999999999999998654    666 


Q ss_pred             CCCCCceEEee
Q 020049          156 TYDPKKLLGVT  166 (332)
Q Consensus       156 ~~~~~kviG~~  166 (332)
                       +|++|++|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             4788999997

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=5.4e-24  Score=179.68  Aligned_cols=135  Identities=19%  Similarity=0.178  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHhC-CC-CcEEEEEccCC--cHHHHHHHhcCC----CCCeEEEEeCCCCHHhhcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAM--LMKIN-PL-VSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~--~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~   88 (332)
                      ++|||+|||| |++|++.+.  .++.. .+ ..||+|+|+++  +++.+.|+.|..    ...++..   ++|++++++|
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~---~td~~eaL~d   76 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK---TMNLDDVIID   76 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE---eCChhhcccC
Confidence            4689999999 999987543  34433 32 46999999998  567777777642    2234443   5688999999


Q ss_pred             CcEEEEcCCC------------------CCCCCCChhhh--------HhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           89 MDLVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        89 aDiVi~~~g~------------------~~~~g~~r~~~--------~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                      ||+||++++.                  +++++++|.+.        +.+|+++++++++.|+++||++|+|++|||+|+
T Consensus        77 ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv  156 (171)
T d1obba1          77 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  156 (171)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHH
Confidence            9999998654                  44556666554        568999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCceEE
Q 020049          143 TVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus       143 ~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      +|+++    ++++++   |+||
T Consensus       157 ~t~~~----~k~~~~---k~iG  171 (171)
T d1obba1         157 GTTLV----TRTVPI---KAVG  171 (171)
T ss_dssp             HHHHH----HHHSCS---EEEE
T ss_pred             HHHHH----HHhcCC---CccC
Confidence            98654    677654   8887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.7e-10  Score=95.53  Aligned_cols=120  Identities=15%  Similarity=0.205  Sum_probs=85.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHH--H----HHHhcCCC--------------CCeEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--T----ADISHMDT--------------GAVVRGF   76 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~----~dl~~~~~--------------~~~v~~~   76 (332)
                      -+||+|||| |.||+.+|..++..|+  +|+++|+++ .  ++.  .    ..+.....              ..++.. 
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-   79 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-   79 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-
Confidence            469999999 9999999999999999  999999987 1  111  1    11111110              013443 


Q ss_pred             eCCCCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        77 ~~~~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                        ++|+.+++++||+|+.++              .+|+++.+++...+++++| ++  |++||.......   +. ....
T Consensus        80 --~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~---~l-a~~~  137 (192)
T d1f0ya2          80 --STDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT--IFASNTSSLQIT---SI-ANAT  137 (192)
T ss_dssp             --ESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC--EEEECCSSSCHH---HH-HTTS
T ss_pred             --cchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCc--eeeccCcccccc---hh-hhhc
Confidence              457889999999999995              6789999999999999996 55  458888766542   22 2323


Q ss_pred             CCCCCceEEee
Q 020049          156 TYDPKKLLGVT  166 (332)
Q Consensus       156 ~~~~~kviG~~  166 (332)
                      . .+.|++|+.
T Consensus       138 ~-~p~r~ig~H  147 (192)
T d1f0ya2         138 T-RQDRFAGLH  147 (192)
T ss_dssp             S-CGGGEEEEE
T ss_pred             c-CHhHEEeec
Confidence            2 356787774

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.95  E-value=8.4e-10  Score=92.82  Aligned_cols=119  Identities=19%  Similarity=0.218  Sum_probs=83.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HH--HHH----HHhcCC-C--------CCeEEEEeCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PG--VTA----DISHMD-T--------GAVVRGFLGQPQ   81 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~--~~~----dl~~~~-~--------~~~v~~~~~~~d   81 (332)
                      -+||+|||| |.||+.+|..++..|+  +|+++|+++ .  ++  ...    ++.... .        ..++..   +++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~   77 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TLS   77 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---ccc
Confidence            468999999 9999999999999998  999999987 1  11  111    111111 1        123443   335


Q ss_pred             HHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        82 ~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                       .+++.+||+||.++              .+|+++.+++.+++++++| ++  |++||.......-+    ..... .|.
T Consensus        78 -~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~--IiaSnTS~l~i~~l----a~~~~-~p~  135 (186)
T d1wdka3          78 -YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA--ILASNTSTISISLL----AKALK-RPE  135 (186)
T ss_dssp             -STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC--EEEECCSSSCHHHH----GGGCS-CGG
T ss_pred             -cccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCe--eEEeccccccHHHH----HHhcc-Cch
Confidence             36799999999985              6789999999999999996 65  45888887665322    22222 346


Q ss_pred             ceEEee
Q 020049          161 KLLGVT  166 (332)
Q Consensus       161 kviG~~  166 (332)
                      |++|+.
T Consensus       136 r~~g~H  141 (186)
T d1wdka3         136 NFVGMH  141 (186)
T ss_dssp             GEEEEE
T ss_pred             heEeec
Confidence            787774

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=8e-09  Score=87.70  Aligned_cols=126  Identities=16%  Similarity=0.162  Sum_probs=80.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC----------------CCCeEEEEeCCCCHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN   84 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~   84 (332)
                      |||+|||+ |+||.++|..|+..|+  +|+.+|+++.  .+..+....                ....+..   ++|+.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHH
Confidence            79999999 9999999999999998  9999999861  111121110                1223443   457889


Q ss_pred             hcCCCcEEEEcCCCCCCCCCC-hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCchHHHHHHHHHHhCCC
Q 020049           85 ALTGMDLVIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g~~-r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ++++||+++++.++|.....+ ....+   ..+...+.+.++...++..||+- |-|.+..-.+....+.+.++.
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~  144 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGK  144 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSC
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccc
Confidence            999999999999988644322 22211   23444455555545566655554 677776654433334444333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.58  E-value=8.3e-08  Score=79.18  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCC---CCCeEE--EEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD---TGAVVR--GFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~---~~~~v~--~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +||+|||| |.+|+.+|..|.+.|+  +|.++|+++.+ ....+.....   ......  ....++|.++++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            69999999 9999999999999998  99999997622 1111111110   011111  01113577899999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCC
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~  140 (332)
                      +..                ......++++++.+. ++.+|+...|..
T Consensus        79 ~v~----------------~~~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          79 VVP----------------AIHHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             CSC----------------GGGHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEc----------------hhHHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            852                112456777788776 566655444443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.57  E-value=1.4e-07  Score=76.97  Aligned_cols=90  Identities=16%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      |||+|||+ |.||+++|..|...|+  +|+.+|+++. ...+.+   ... .. ..   .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~---~~~-~~-~~---~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVE---RQL-VD-EA---GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH---TTS-CS-EE---ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHH---hhc-cc-ee---eee-cccccccccccccC--c
Confidence            79999999 9999999999999998  9999998752 112221   111 11 11   124 47899999999984  2


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                                    ...+.++.+.+..+. ++.+|+..++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          344556667777665 5666655543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.53  E-value=1.6e-07  Score=78.02  Aligned_cols=97  Identities=24%  Similarity=0.250  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC----C---CCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----T---GAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----~---~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      |||+|||| |.+|+++|..|...++  +|.++.+......+..+....    .   ....... .++|+.+++++||+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF-WPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE-CGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc-ccccHHHHHhccchhh
Confidence            79999999 9999999999999888  999997643233334443221    1   1122222 3678889999999999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++.  |              ...++++++++..+.++..+++.|
T Consensus        77 ~av--p--------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          77 LGV--S--------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             ECS--C--------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             ccc--c--------------hhhhHHHHHhhccccccceecccc
Confidence            984  2              234567777787777666555553

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.49  E-value=1.4e-07  Score=79.02  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=52.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--------CCCeEEEEeCCCCHHhhcCCCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TGAVVRGFLGQPQLENALTGMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------~~~~v~~~~~~~d~~~a~~~aD   90 (332)
                      .+.||+|||| |..|+++|..|...++  +|.|+++++.......-.+..        ...++..   ++|+++++++||
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~~ad   79 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAE   79 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCS
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhccccccccccccccccccc---chhhhhccCCCC
Confidence            3457999999 9999999999999888  999999876221111111211        1234554   468899999999


Q ss_pred             EEEEcC
Q 020049           91 LVIIPA   96 (332)
Q Consensus        91 iVi~~~   96 (332)
                      +||++.
T Consensus        80 ~iiiav   85 (189)
T d1n1ea2          80 IILFVI   85 (189)
T ss_dssp             CEEECS
T ss_pred             EEEEcC
Confidence            999984

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.45  E-value=1.9e-07  Score=84.68  Aligned_cols=173  Identities=17%  Similarity=0.116  Sum_probs=97.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC---HHhhcC--CCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~--~aDiV   92 (332)
                      |||.|+||+|++|+.++..|+..|+  +|+++|...  .+.....+.+.. ...+..+. .-+|   +.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999998  999999643  222212121111 01122211 1123   445566  78999


Q ss_pred             EEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 020049           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (332)
Q Consensus        93 i~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~  170 (332)
                      |++|+.+..+  -+...+.+..|+...+++.+.++++....+|...|.-+..-..- ...........+...+|.+.+..
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~-~~~~e~~~~~~p~~~Y~~sK~~~  156 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPK-IPYVESFPTGTPQSPYGKSKLMV  156 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCS-SSBCTTSCCCCCSSHHHHHHHHH
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccc-cccccccccCCCcchHHHHHhhh
Confidence            9998754211  12345678889999999999999987665544433111100000 00000111223445566766665


Q ss_pred             HHHHHHHHHH-hCCCCCCC-ceeEEEecC
Q 020049          171 VRANTFVAEV-LGLDPRDV-DVPVVGGHA  197 (332)
Q Consensus       171 ~r~~~~la~~-l~v~~~~v-~~~v~G~hg  197 (332)
                      .++....++. .+.+..-+ -..++|.+.
T Consensus       157 e~~~~~~~~~~~~~~~~ilR~~~v~G~~~  185 (338)
T d1udca_         157 EQILTDLQKAQPDWSIALLRYFNPVGAHP  185 (338)
T ss_dssp             HHHHHHHHHHSTTCEEEEEEECEEECCCT
T ss_pred             hHHHHHHHhhccCCeEEEEeeccEEeccC
Confidence            5554433433 34433333 256677654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.5e-07  Score=84.60  Aligned_cols=165  Identities=12%  Similarity=0.045  Sum_probs=102.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +||.|+||+|++|++++..|+..|+  +|+.+|...  ....   +.+......+.... ...++.++.++|+||++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~---~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRN---VEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGG---TGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHHH---HHHhcCCCceEEEe-hHHHHHHHcCCCEEEECccc
Confidence            4899999999999999999999988  999998633  1111   11111122333222 22345667899999999875


Q ss_pred             CCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cC-----CCCc-hHHHHHHH-HHHhCCCCCCceEEeehh
Q 020049           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SN-----PVNS-TVPIAAEV-FKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        99 ~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tN-----P~~~-~t~~~~~~-~~~~~~~~~~kviG~~~l  168 (332)
                      ...+  .....+.+..|+....++.+.+++...  .+|.+ |.     |... ..    +- .....-+.|...+|.+.+
T Consensus        76 ~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~----e~~~~~~~~~~p~~~Y~~sK~  149 (312)
T d2b69a1          76 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQS----EDYWGHVNPIGPRACYDEGKR  149 (312)
T ss_dssp             CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBC----TTCCCBCCSSSTTHHHHHHHH
T ss_pred             CCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCC----ccccCCCCCCCCccHHHHHHH
Confidence            4311  134456678899999999999988754  44444 31     1100 00    00 000011234456777777


Q ss_pred             hHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          169 DVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ....+...+++..|++...++ +.++|.+.
T Consensus       150 ~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         150 VAETMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            777777888888888765553 55788553

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=2.6e-06  Score=74.33  Aligned_cols=81  Identities=10%  Similarity=-0.028  Sum_probs=61.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHH
Q 020049          240 AGSATLSMAYAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKA  315 (332)
Q Consensus       240 kg~~~~s~a~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~s  315 (332)
                      ++...||  ..+++++++|.+|++.   ++.++ .++|.+   |+++++++||+|+++|+.++-. ++|++...+++..-
T Consensus       127 ~~~~~~~--e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~  200 (253)
T d1up7a2         127 RGGSMYS--TAAAHLIRDLETDEGK---IHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAV  200 (253)
T ss_dssp             STTTTHH--HHHHHHHHHHHSSSCE---EEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHH
T ss_pred             ccCcchH--HHHHHHHHHHHcCCCc---EEEEeCCCcCcCCCCChhhheEEEEEecCCccccccc-CCCcHHHHHHHHHH
Confidence            3455565  7889999999999863   44454 577886   7899999999999999999877 69999988887665


Q ss_pred             HHHHHHHHHHh
Q 020049          316 KKELAGSIQKG  326 (332)
Q Consensus       316 a~~l~~~~~~~  326 (332)
                      ...-+-.++.+
T Consensus       201 ~~~e~L~veA~  211 (253)
T d1up7a2         201 KMYERLTIEAY  211 (253)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            44444344433

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.5e-06  Score=73.05  Aligned_cols=105  Identities=18%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-CCCeEEE--EeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRG--FLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~--~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .++||+|+||+|++|++++..|+..|+  +|.+++++..+     +.... ....+..  .....++.++++++|+||.+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~   74 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----cccccccccccccccccchhhHHHHhcCCCEEEEE
Confidence            457999999999999999999999998  99999987521     11111 1122221  11113466889999999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      +|........     ..+....+++++.+++..-+- +|.+
T Consensus        75 ~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~r-~i~~  109 (205)
T d1hdoa_          75 LGTRNDLSPT-----TVMSEGARNIVAAMKAHGVDK-VVAC  109 (205)
T ss_dssp             CCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCCE-EEEE
T ss_pred             eccCCchhhh-----hhhHHHHHHHHHHHHhcCCCe-EEEE
Confidence            8764222111     234566777888888776443 3444

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.40  E-value=2e-07  Score=85.05  Aligned_cols=174  Identities=15%  Similarity=0.047  Sum_probs=104.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe--CCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++|||.|+||+|++|++++..|++.|+  +|+.+|.........++    .........  ...++.+++++.|.||.++
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDM----FCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGG----TCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhc----ccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            579999999999999999999999998  99999976521111111    112222211  1123446678999999998


Q ss_pred             CCCCCC---CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHH--HHH---HHHHhCCCCCCceEEeehh
Q 020049           97 GVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI--AAE---VFKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        97 g~~~~~---g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~--~~~---~~~~~~~~~~~kviG~~~l  168 (332)
                      +.....   ..........|+.....+.+...+....-+|...|--+.....-  ..+   .....+...|...+|.+.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~  167 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL  167 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHH
Confidence            654321   22344556779999999999998776443333333211111000  000   0001111234456777777


Q ss_pred             hHHHHHHHHHHHhCCCCCCCc-eeEEEecCC
Q 020049          169 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  198 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v~-~~v~G~hg~  198 (332)
                      ...++...+.+..|++..-++ ..++|.++.
T Consensus       168 ~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         168 ATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            777777777888887755554 567776654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=4.1e-07  Score=83.18  Aligned_cols=167  Identities=14%  Similarity=0.031  Sum_probs=101.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcC--CCCCeEEEEeCC-C---CHHhhcCCC--c
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTGAVVRGFLGQ-P---QLENALTGM--D   90 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~--~~~~~v~~~~~~-~---d~~~a~~~a--D   90 (332)
                      ++.|+||+|++|++++..|++.|+  +|+.+|+...   ......+.+.  ....++..+.+. .   ++++.+++.  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            445999999999999999999998  9999998541   1111111111  112345543211 2   234556655  9


Q ss_pred             EEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCC--CcEEEEec------CCCCchHHHHHHHHHHhCCCCCC
Q 020049           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLIS------NPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        91 iVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p--~a~viv~t------NP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      +|+.+|+.....  ..+....+..|+....++.+.+++++-  ...+|.+|      +|.+...       .....+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~-------~E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQ-------KETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSB-------CTTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCc-------CCCCCCCCC
Confidence            999998875322  234455678899999999999998763  34555544      2222210       111123345


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ..+|.+.+...++...+++..+++..-++ +.++|...
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            67788877777788888888887765554 34777643

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.33  E-value=3.9e-07  Score=81.61  Aligned_cols=111  Identities=21%  Similarity=0.183  Sum_probs=74.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeCC----CCHHhhcCCC--cEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ----PQLENALTGM--DLV   92 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~a--DiV   92 (332)
                      ||.|+||+|++|++++..|++.|+  +|+.+|....   ......+...   ..+..+.+.    .++.++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999998  9999985431   1112223222   223322211    2345666655  999


Q ss_pred             EEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        93 i~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |++|+......  .+..+....|+....++.+...+....-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99987543221  2345667789999999999999887666555554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=2.2e-07  Score=75.28  Aligned_cols=102  Identities=17%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      |||+|||+ |.+|+.++..|.+.|+  +|.++|+++..................... ..+ .+++.++|+||++...+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT-AND-PDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE-ESC-HHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc-cch-hhhhcccceEEEeeccc-
Confidence            79999999 9999999999999999  999999887211111111111111111121 223 57789999999995321 


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCch
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST  143 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~  143 (332)
                                     -+.+..+.+..+. ++..|+.+.|=++..
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~  103 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTI  103 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHH
Confidence                           1345566666554 688888888876654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.28  E-value=1.4e-06  Score=78.12  Aligned_cols=175  Identities=16%  Similarity=0.185  Sum_probs=106.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC----CCHHhhcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~----~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~aDiV   92 (332)
                      |||.|+||+|++|++++..|++.|+    ..+++.+|.....+....+........+..+...    ........+.|.|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999988764    3578888875421111112222122344433211    1234567999999


Q ss_pred             EEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhH
Q 020049           93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (332)
Q Consensus        93 i~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~  170 (332)
                      +++|+.+....  ......+..|+.....+.+.+.++...-+|...|.-+..-..-  .-+....-+.|...+|.+.+..
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~--~~~~E~~~~~p~~~Y~~sK~~~  158 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDS--GSWTESSPLEPNSPYAASKAGS  158 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSS--SCBCTTSCCCCCSHHHHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCC--CCCCCCCCCCCCCHHHHHHHHH
Confidence            99986653221  2334556789999999999999887654443333211100000  0000111233445677776667


Q ss_pred             HHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          171 VRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       171 ~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ..+...+++..+++...++ +.++|.+.
T Consensus       159 E~~~~~~~~~~~~~~~~lR~~~vyGp~~  186 (322)
T d1r6da_         159 DLVARAYHRTYGLDVRITRCCNNYGPYQ  186 (322)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHhCCCEEEEEeeeEECcCC
Confidence            7777888888888876664 66788543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.5e-07  Score=78.63  Aligned_cols=111  Identities=17%  Similarity=0.072  Sum_probs=73.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE--EeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +++||.|+||+|++|++++..|++.+...+|.++++++..........    .....  +....++.++++++|+|+.++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~----i~~~~~D~~~~~~~~~~~~~~d~vi~~~   88 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN----VNQEVVDFEKLDDYASAFQGHDVGFCCL   88 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG----CEEEECCGGGGGGGGGGGSSCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce----eeeeeecccccccccccccccccccccc
Confidence            446899999999999999999998887679999998761100000010    11111  111235678899999999998


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                      |... ......++...|.....++++...+...+-++.
T Consensus        89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          89 GTTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             CCCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccc-cccchhhhhhhcccccceeeecccccCcccccc
Confidence            7542 112244556778888889998887765554433

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.17  E-value=2.6e-06  Score=69.04  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||. |.||+.+|..|+..|+  +|+.+|+++.  .+.++.....    ..   ..+..+++++||+|+++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~~----~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAGA----ET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTTC----EE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhhh----hh---cccHHHHHhCCCeEEEEc
Confidence            79999999 9999999999999999  9999998752  2233333221    11   235678999999999984

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.14  E-value=3.7e-06  Score=75.80  Aligned_cols=176  Identities=14%  Similarity=0.005  Sum_probs=107.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHH---HHHHHhcCCCCCeEEEEeC-CCC---HHhhcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG---VTADISHMDTGAVVRGFLG-QPQ---LENALTGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~---~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~~a   89 (332)
                      ++++|.|+||+|++|++++..|.+.|+  +|..+|...  ...   ....+........++.+.. ..|   ......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            356899999999999999999999999  999999643  111   1111111101123332221 122   33566888


Q ss_pred             cEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeeh
Q 020049           90 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (332)
Q Consensus        90 DiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~  167 (332)
                      |.|+..+....-+  ..+.......|+.....+.+.+.+.....+|...|..+..-..-.  -.....-..|...+|.+.
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~--~~~E~~~~~p~~~Y~~sK  170 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGL--PKVEDTIGKPLSPYAVTK  170 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCS--SBCTTCCCCCCSHHHHHH
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCC--CccCCCCCCCCCcchHHH
Confidence            9999887544221  233455678899999999999998876655555443221100000  000011123445678877


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-eeEEEecCC
Q 020049          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  198 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~  198 (332)
                      +..+++...+++..+++..-++ ..++|.+.+
T Consensus       171 ~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         171 YVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            7788888888888888866666 448886544

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.11  E-value=2.4e-06  Score=77.25  Aligned_cols=176  Identities=16%  Similarity=0.123  Sum_probs=101.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC----CCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~aDiVi~~   95 (332)
                      +|||.|+||+|++|++++..|+..|+...++.+|.....+....+... ....+..+.+.    ..+.+++++.|.|++.
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            589999999999999999999888874467777753311111111111 12334433221    2346778999999998


Q ss_pred             CCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc-h-----HHHH----HHHHHHhCCCCCCceE
Q 020049           96 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-T-----VPIA----AEVFKKAGTYDPKKLL  163 (332)
Q Consensus        96 ~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~-~-----t~~~----~~~~~~~~~~~~~kvi  163 (332)
                      |+......  .+..+.+..|+.....+.+...+....- +...|.-+.. .     .+..    ...+.......|...+
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~-i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRF-HHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEE-EEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccccc-cccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            86553222  2234567889999999999998887532 2222221110 0     0000    0000001112233457


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      |.+.+..+++...+++..+++..-++ ..++|.+.
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            77777777777777777777654443 45778544

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.11  E-value=1.8e-06  Score=79.02  Aligned_cols=176  Identities=16%  Similarity=0.062  Sum_probs=101.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeC-CCCH---HhhcC--CCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENALT--GMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~---~~a~~--~aDiVi~   94 (332)
                      |||.|+||+|++|++++..|+..++. .++++|.....+....+.+......+..+.. -+|.   ...++  +.|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999988872 4778886542111122333322344554321 1232   33333  5899999


Q ss_pred             cCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCC--------cEEEEecC-CCCchH---HHHHHH------HHHh
Q 020049           95 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN--------ATVNLISN-PVNSTV---PIAAEV------FKKA  154 (332)
Q Consensus        95 ~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~--------a~viv~tN-P~~~~t---~~~~~~------~~~~  154 (332)
                      +|+....+.  .+..+.+..|+....++.+.+.++...        ..+|.+|. -+....   .. .+-      ....
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-~~~~~~~~~~~e~  158 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDE-VENSVTLPLFTET  158 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGG-SCTTSCCCCBCTT
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCc-cccccCCCCcccC
Confidence            987542110  123456788888888888888765322        23444422 111000   00 000      0000


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCC
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  198 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~  198 (332)
                      ....|..++|.+.+..+++...+++..+++...++ ..|+|.++.
T Consensus       159 ~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~  203 (361)
T d1kewa_         159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHF  203 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCC
Confidence            11223455788877788888888888888766663 567886654

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=4e-06  Score=75.48  Aligned_cols=167  Identities=14%  Similarity=0.060  Sum_probs=96.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-C---C-HHhhcCCCcEEEEc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-P---Q-LENALTGMDLVIIP   95 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~---d-~~~a~~~aDiVi~~   95 (332)
                      |||.|+||+|++|++++..|+..|.. +|+.+|..... . ..+..   .+.+..+.+. +   + .+.+++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999998887732 89999986511 1 11111   2334433221 1   2 23477899999999


Q ss_pred             CCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCC------CchHHHHHHHHHHhCCCCCCceEEeeh
Q 020049           96 AGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (332)
Q Consensus        96 ~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~------~~~t~~~~~~~~~~~~~~~~kviG~~~  167 (332)
                      |+......  ......+..|+....++++.+.+....- ++..|.-+      .....- ........-..|...+|.+.
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~-~~~ss~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~~Y~~sK  152 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI-IFPSTSEVYGMCSDKYFDED-HSNLIVGPVNKPRWIYSVSK  152 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE-EEECCGGGGBTCCCSSBCTT-TCCCBCCCTTCGGGHHHHHH
T ss_pred             cccccccccccCCccccccccccccccccccccccccc-cccccccccccccccccccc-cccccccccCCCcchhhhcc
Confidence            87653222  1234567899999999999998776543 22222111      000000 00000000011234567776


Q ss_pred             hhHHHHHHHHHHHhCCCCCCCc-eeEEEe
Q 020049          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGG  195 (332)
Q Consensus       168 ld~~r~~~~la~~l~v~~~~v~-~~v~G~  195 (332)
                      +..+++....++..|++..-++ ..++|.
T Consensus       153 ~~~E~~~~~~~~~~~~~~~i~r~~~~~g~  181 (342)
T d2blla1         153 QLLDRVIWAYGEKEGLQFTLFRPFNWMGP  181 (342)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECSEECS
T ss_pred             cchhhhhhhhhcccCceeEEeeccccccc
Confidence            6777777888888887644332 334453

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.08  E-value=1.7e-05  Score=64.20  Aligned_cols=95  Identities=17%  Similarity=0.183  Sum_probs=61.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      +||+|||+ |.+|+++|..|...++..+|+.+|.++ ....+.+...    .... .  +........++|+||++.  |
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~----~~~~-~--~~~~~~~~~~~dlIila~--p   71 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI----IDEG-T--TSIAKVEDFSPDFVMLSS--P   71 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS----CSEE-E--SCGGGGGGTCCSEEEECS--C
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc----chhh-h--hhhhhhhccccccccccC--C
Confidence            37999999 999999999999998767999999986 2222232211    1111 1  112234557999999984  2


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP  139 (332)
                                    ...+.++.+.+..+. ++.+++-+++.
T Consensus        72 --------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 --------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             --------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             --------------chhhhhhhhhhhccccccccccccccc
Confidence                          334555666666655 56766655544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.05  E-value=5.4e-06  Score=69.10  Aligned_cols=108  Identities=18%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC--------------CCCeEEEEeCCCCHHhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~a~   86 (332)
                      |||+|||. |+||..+|..++ .|+  +|+.+|+++.  .+..+....              .......   +++...+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~---~~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhc---cchhhhhh
Confidence            79999998 999999997665 577  9999999861  111111110              1122332   23556888


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCc
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS  142 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~  142 (332)
                      .++|+++++..+|........     ....+....+.+....+...+++- |-|.+.
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt  123 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             hccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEeeeecCcee
Confidence            999999999776643221111     123445555556666666655444 345444

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=7.5e-06  Score=75.17  Aligned_cols=174  Identities=13%  Similarity=0.109  Sum_probs=101.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH------------------HHHHhcCCCCCeEEEEeCC-CC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV------------------TADISHMDTGAVVRGFLGQ-PQ   81 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~------------------~~dl~~~~~~~~v~~~~~~-~d   81 (332)
                      |||.|+||+|++|++++..|++.|+  +|+.+|.......                  ...+... ...++..+.+. +|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~Dl~d   78 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKAL-TGKSIELYVGDICD   78 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHH-HCCCCEEEESCTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhh-cCCCcEEEEccCCC
Confidence            7999999999999999999999998  9999994211000                  0000000 01223322211 22


Q ss_pred             ---HHhhcCC--CcEEEEcCCCCCCCC--CC---hhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc-hHHHH-HH
Q 020049           82 ---LENALTG--MDLVIIPAGVPRKPG--MT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-TVPIA-AE  149 (332)
Q Consensus        82 ---~~~a~~~--aDiVi~~~g~~~~~g--~~---r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~-~t~~~-~~  149 (332)
                         +.+++++  .|+|++.|+....+.  .+   ..+....|+....++.+.+.++..+..++..|..+.. ..... .+
T Consensus        79 ~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~  158 (393)
T d1i24a_          79 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEE  158 (393)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCS
T ss_pred             HHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccc
Confidence               3445554  499999987543111  12   2345678999999999999999988777666532211 00000 00


Q ss_pred             HHH--Hh--------CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          150 VFK--KA--------GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       150 ~~~--~~--------~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                      ...  ..        ....+...+|.+.+..+++...+++..+++...++ ..++|...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~  217 (393)
T d1i24a_         159 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  217 (393)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             ccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence            000  00        00122345677766666776777788887665554 45777543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=5.1e-06  Score=75.09  Aligned_cols=113  Identities=18%  Similarity=0.062  Sum_probs=73.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cH--HHHHHHhcCCCCCeEEE-EeCCCCHHhhcC--CCcEEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TP--GVTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVI   93 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~--~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVi   93 (332)
                      .|.|+||+|++|++++..|+..|+  +|+.+|...   ..  .....+.+... ..+.. +....+++.+++  +.|+|+
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHI-PFYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCC-CEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccCC-eEEEeecCCHHHHHHHHhccCCCEEE
Confidence            588999999999999999999998  999998643   11  11222222211 11221 100112333344  789999


Q ss_pred             EcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        94 ~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      ++|+.....  .+....+...|+.....+.+..++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            998765321  22345667789999999999999887666555444

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.01  E-value=3.6e-05  Score=69.23  Aligned_cols=114  Identities=14%  Similarity=0.000  Sum_probs=72.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcC-CCCCeEEEE----eCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHM-DTGAVVRGF----LGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~----~~~~d~~~a~~~aDiVi~   94 (332)
                      .||.|+||+|++|++++..|++.|+  +|+...++. .......+.+. ........+    .....+.++++++|.|+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            5899999999999999999999998  887666554 11111111111 111122211    112345678999999999


Q ss_pred             cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        95 ~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .++... ...+...+...|+....++.+.+.++.--..+|..|
T Consensus        90 ~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          90 IASVVS-FSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             CCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             hccccc-ccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence            876542 334455566779999999999998874323344443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.99  E-value=1.6e-05  Score=72.65  Aligned_cols=173  Identities=16%  Similarity=0.114  Sum_probs=101.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEccCC----------c-HHHHHHHhcCC------CCCeEEEEeC-CCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN----------T-PGVTADISHMD------TGAVVRGFLG-QPQ   81 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~-~~~~~ei~L~D~~~----------~-~~~~~dl~~~~------~~~~v~~~~~-~~d   81 (332)
                      |||.|+||+||+|++++..|+. .++  +|+.+|...          . ......+....      ....+..+.+ -.|
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccC
Confidence            7999999999999999988875 677  999998421          1 12222222221      1122332221 123


Q ss_pred             ---HHhhc---CCCcEEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCc-hHHHHHHHHH
Q 020049           82 ---LENAL---TGMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFK  152 (332)
Q Consensus        82 ---~~~a~---~~aDiVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~-~t~~~~~~~~  152 (332)
                         +++++   +++|+|+++|+......  .........|+.....+.+...+..+..++...+--+.. ....  ....
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~  158 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMG--SVST  158 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-------
T ss_pred             HHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCcccccccccccccccccc--cccc
Confidence               23333   57899999987543211  123445678999999999999988876654443211100 0000  0000


Q ss_pred             ------HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecC
Q 020049          153 ------KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA  197 (332)
Q Consensus       153 ------~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg  197 (332)
                            ...-+.|...+|.+.+...++...+.+..|++...++ +.++|...
T Consensus       159 ~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~  210 (383)
T d1gy8a_         159 NAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHE  210 (383)
T ss_dssp             CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCT
T ss_pred             cccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCc
Confidence                  0011234566777777777888888888898766553 55777544

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.95  E-value=2.4e-05  Score=68.64  Aligned_cols=74  Identities=12%  Similarity=0.052  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEee-EEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 020049          249 YAAVKFADACLRGLRGDAGVVECA-FVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  324 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~~-~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~  324 (332)
                      ..+++++++|.+|.+.   ++.++ .++|.+   |+++++++||+|+++|+.++.. ++|++..++++......-+-.++
T Consensus       146 e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~~~e~L~ve  221 (270)
T d1s6ya2         146 DAACSLISSIYNDKRD---IQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQIKSFERVAAE  221 (270)
T ss_dssp             HHHHHHHHHHHHTCCC---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999863   44444 677886   7899999999999999999876 69999999888776554444444


Q ss_pred             Hh
Q 020049          325 KG  326 (332)
Q Consensus       325 ~~  326 (332)
                      .+
T Consensus       222 Aa  223 (270)
T d1s6ya2         222 AA  223 (270)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.94  E-value=1.5e-05  Score=64.42  Aligned_cols=65  Identities=22%  Similarity=0.380  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||++||. |.||+.+|..|.+.|+  +|..+|++..  ...++.....   ..    ..+..++++.+|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~~---~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAGA---SA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTTC---EE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhhc---cc----cchhhhhccccCeeeecc
Confidence            358999999 9999999999999999  9999998752  2233433321   11    235679999999999984

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.90  E-value=6.7e-06  Score=74.10  Aligned_cols=113  Identities=17%  Similarity=0.155  Sum_probs=73.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeC-CCC---HHhhcC--CCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~--~aDi   91 (332)
                      .+||.|+||+|++|++++..|+..|+  +|+.+|+++.  ....... ..  ...+..+.+ -+|   +.++++  ..|+
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~-~~--~~~i~~~~~Dl~d~~~l~~~~~~~~~~~   82 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETA-RV--ADGMQSEIGDIRDQNKLLESIREFQPEI   82 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHT-TT--TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhh-hc--ccCCeEEEeeccChHhhhhhhhhchhhh
Confidence            46999999999999999999999998  9999998761  2222211 11  112222211 123   234444  4488


Q ss_pred             EEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           92 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        92 Vi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |+.+++.+....  .........|+....++.+.+.+......++..|
T Consensus        83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            888876542111  1234556779999999999999887666555443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.85  E-value=1.3e-05  Score=64.16  Aligned_cols=63  Identities=17%  Similarity=0.295  Sum_probs=47.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||+ |.+|++++..|...++  +++++|++..  +.....+.       +.   ...+..+++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~~~~l~~~~g-------~~---~~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSKEIAEQLA-------LP---YAMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHHHHHHHHT-------CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHhHHhhccccc-------ee---eechhhhhhhccceeeeec
Confidence            79999999 9999999999988877  9999998652  22222221       11   1346678899999999985

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.85  E-value=2.7e-05  Score=68.94  Aligned_cols=171  Identities=15%  Similarity=0.029  Sum_probs=98.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CCHH---hhc--CCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQLE---NAL--TGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d~~---~a~--~~aDiVi~   94 (332)
                      +||.|+||+|++|++++..|+..|+  +|+.+|+.........+.+.....++..+... .|..   ..+  ...++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3799999999999999999999998  99999986521111122222223445443221 2321   112  24567777


Q ss_pred             cCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC-CCchHHHHHHHHHHhCCCCCCceEEeehhhHH
Q 020049           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  171 (332)
Q Consensus        95 ~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~  171 (332)
                      +++.....  .......+..|+....++.+.+.++.+..+++..|.- +......  ......+-+.+...+|.+.+...
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~--~~~~E~~~~~p~~~Y~~sK~~~E  156 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQA--ERQDENTPFYPRSPYGVAKLYGH  156 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSS--SSBCTTSCCCCCSHHHHHHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccC--CCCCCCCCccccChhHHHHHHHH
Confidence            76543221  1234566788999999999999999877666655321 1000000  00001111223445676666667


Q ss_pred             HHHHHHHHHhCCCCCCCc-eeEEEe
Q 020049          172 RANTFVAEVLGLDPRDVD-VPVVGG  195 (332)
Q Consensus       172 r~~~~la~~l~v~~~~v~-~~v~G~  195 (332)
                      ++...+++..+++...++ +.++|.
T Consensus       157 ~~~~~~~~~~~~~~~~lr~~~vyGp  181 (321)
T d1rpna_         157 WITVNYRESFGLHASSGILFNHESP  181 (321)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHhhcCCcEEEEEEecccCC
Confidence            777777778887644332 335664

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=2.8e-05  Score=68.76  Aligned_cols=160  Identities=14%  Similarity=0.086  Sum_probs=94.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhh--cCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA--LTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a--~~~aDiVi~~~g~   98 (332)
                      +||.|+||+|++|++++..|++.|+  +++++|....    .|+.+.            ..+.+.  ....|.|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~------------~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDS------------RAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCH------------HHHHHHHhhcCCCEEEEcchh
Confidence            4899999999999999999999988  6677765431    001000            011111  1356889888754


Q ss_pred             CCCC---CCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHH--HHHHHH-HHhCCCCCCceEEeehhhHHH
Q 020049           99 PRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP--IAAEVF-KKAGTYDPKKLLGVTMLDVVR  172 (332)
Q Consensus        99 ~~~~---g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~--~~~~~~-~~~~~~~~~kviG~~~ld~~r  172 (332)
                      ....   .....+++..|+....++.+.+.++.-.-+|...|.-+..-..  -..|-. ...+-.+++..+|.+.+..++
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~  144 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIK  144 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHH
Confidence            3211   1234566788999999999999888644444333322211000  000000 000111223357777777788


Q ss_pred             HHHHHHHHhCCCCCCCc-eeEEEecCC
Q 020049          173 ANTFVAEVLGLDPRDVD-VPVVGGHAG  198 (332)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~hg~  198 (332)
                      +...+++..|++..-++ ..++|.++.
T Consensus       145 ~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         145 LCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            87778888887755554 667887654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.78  E-value=3.2e-05  Score=63.16  Aligned_cols=74  Identities=12%  Similarity=0.200  Sum_probs=47.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .|||+|||. |.||+++|..|+..|+  +|+.||+++.+  ............+.........++...+..++.++...
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            489999999 9999999999999998  99999997622  22222222222233333211123345566777777763

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.75  E-value=6.1e-05  Score=61.45  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCC-CCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .+|+|||. |.||+.+|..|+..|+  +|+.+|+++.+  +.++.... ............+..+++.++|.++++..  
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~--   75 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK--   75 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC--
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEecC--
Confidence            37999999 9999999999999999  99999998732  22332221 11122221112345688899999999842  


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEec
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~t  137 (332)
                                   +.+.+.++...+.... |+.++|..|
T Consensus        76 -------------~~~~v~~v~~~l~~~~~~g~iiid~s  101 (176)
T d2pgda2          76 -------------AGQAVDNFIEKLVPLLDIGDIIIDGG  101 (176)
T ss_dssp             -------------TTHHHHHHHHHHHHHCCTTCEEEECS
T ss_pred             -------------chHHHHHHHHHHHhccccCcEEEecC
Confidence                         1233444455555555 556666654

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=7.3e-05  Score=65.68  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHHHHHHHHHHHHHHHH
Q 020049          249 YAAVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERIGLEKAKKELAGSIQ  324 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~~l~~sa~~l~~~~~  324 (332)
                      ..+++++++|.+|.+.   .+.+ +.++|.+   |+|+++++||+|+++|+.++-. ++|++..+++++.-...-+-.++
T Consensus       153 e~av~ii~ai~~~~~~---~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~k~~e~Ltve  228 (276)
T d1u8xx2         153 SYIVDLARAIAYNTGE---RMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLMEQQVSVEKLTVE  228 (276)
T ss_dssp             HHHHHHHHHHHHTCCE---EEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCc---EEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999762   4444 4678886   7899999999999999999877 69999998888765544444444


Q ss_pred             Hh
Q 020049          325 KG  326 (332)
Q Consensus       325 ~~  326 (332)
                      .+
T Consensus       229 Aa  230 (276)
T d1u8xx2         229 AW  230 (276)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00043  Score=59.79  Aligned_cols=160  Identities=15%  Similarity=0.161  Sum_probs=94.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|++.|.  .|++.|+++  .+..+.++.......++..+.. -++.          .+.+.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4699999999999999999999998  999999887  3444555665433334443221 2231          23356


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhh----HHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNIN----AGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n----~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .-|++|..||......   .+   ....+..|    ....+.+++.+.+.. .++.||+++......            +
T Consensus        89 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~  156 (257)
T d1xg5a_          89 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR------------V  156 (257)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC------------C
Confidence            7899999998653221   22   12233344    455566777776665 367777776543221            1


Q ss_pred             CCCC--ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPK--KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~--kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..  -.++.+.-.-..+.+.+|..|.-.+..|++..+.
T Consensus       157 ~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         157 LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence            1111  1123322223346677777764445667666654

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3e-05  Score=69.49  Aligned_cols=167  Identities=13%  Similarity=0.040  Sum_probs=96.8

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-c--HHHHHHHhcC---CCCCeEEEEeCC-CC---HHhhc--C
Q 020049           21 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHM---DTGAVVRGFLGQ-PQ---LENAL--T   87 (332)
Q Consensus        21 ~kI-~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~~~dl~~~---~~~~~v~~~~~~-~d---~~~a~--~   87 (332)
                      +|| .|+||+|++|++++..|+..|+  +|+.+|+.. .  .+...++...   .....++.+... +|   +..++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            489 6999999999999999999998  999999864 1  1111111111   112334443221 22   22333  3


Q ss_pred             CCcEEEEcCCCCCCC--CCChhhhHhhhHHHHHHHHHHHHhhCC-C-cEEEEecC------CCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP-N-ATVNLISN------PVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~--g~~r~~~~~~n~~~~~~i~~~i~~~~p-~-a~viv~tN------P~~~~t~~~~~~~~~~~~~  157 (332)
                      +.|+|+..++.....  .....+++..|+....++.+.+++++- + ..+|.+|.      |-....       ....-+
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-------~E~~~~  151 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQ-------KETTPF  151 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSB-------CTTSCC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCC-------CCCCCC
Confidence            456777776544211  123455667899999999999988763 2 35555541      111110       011123


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEec
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~h  196 (332)
                      .|...+|.+.+..+++...+++..+++...++ ..++|..
T Consensus       152 ~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         152 YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            34566888877777777777788876644332 4466653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3e-05  Score=69.64  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=69.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---------cHHH--HHHHhcCCCCCeEEEEeCC-CC---HHh
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---------TPGV--TADISHMDTGAVVRGFLGQ-PQ---LEN   84 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---------~~~~--~~dl~~~~~~~~v~~~~~~-~d---~~~   84 (332)
                      ..||.|+||+|++|++++..|+..|+  +|+.+|...         ....  ...+..    .++..+... +|   +++
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~l~~   75 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELTG----RSVEFEEMDILDQGALQR   75 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHHT----CCCEEEECCTTCHHHHHH
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhcC----CCcEEEEeeccccccccc
Confidence            35899999999999999999999998  899998522         1111  112222    223322211 23   334


Q ss_pred             hcCCCc--EEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 020049           85 ALTGMD--LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus        85 a~~~aD--iVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                      ++.+.|  +|+++|+.+....  ....+....|+.....+.+.++++....++.
T Consensus        76 ~~~~~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~  129 (346)
T d1ek6a_          76 LFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVF  129 (346)
T ss_dssp             HHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccccccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccc
Confidence            454444  6777777542111  1345667889999999999998887665443

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.66  E-value=1.6e-05  Score=66.58  Aligned_cols=102  Identities=11%  Similarity=0.040  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi~~   95 (332)
                      |+||.|+||+|++|++++..|+..++..+|+...++...          ..+.+...  ..|+    .....+.|.|+.+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~~~~~--~~d~~~~~~~~~~~~d~vi~~   69 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNP--VGPLAELLPQLDGSIDTAFCC   69 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECC--BSCHHHHGGGCCSCCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hccccccc--ccchhhhhhccccchheeeee
Confidence            469999999999999999999998875566666544310          01222211  1121    2233557999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEE
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~v  133 (332)
                      +|...........+...|......+++..++....-++
T Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          70 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeeeccccccccccccchhhhhhhcccccccccccccc
Confidence            87654333344566678888888899888876545443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.64  E-value=0.00026  Score=54.62  Aligned_cols=99  Identities=21%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HH-hhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LE-NALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~a~~~aDiVi~~~   96 (332)
                      |||.|+|+ |.+|+.++..|...|+  +++++|.++..  +.++.... ...+- +...+|   +. ..+++||.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~-~~~vi-~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVI-NGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEE-ESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhh-hhhhc-cCcccchhhhhhcChhhhhhhcccC
Confidence            79999999 9999999999999998  99999998621  12222111 11221 111223   22 2258999999873


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      ..         |  ..|+-.    +..+++++++.+|..+.+|..
T Consensus        74 ~~---------d--~~N~~~----~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          74 GK---------E--EVNLMS----SLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             SC---------H--HHHHHH----HHHHHHTTCCCEEEECSSTTH
T ss_pred             Cc---------H--HHHHHH----HHHHHHcCCceEEEEecCHHH
Confidence            21         1  345422    223445667666555566653

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.64  E-value=4e-05  Score=63.45  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcC-CCCCeEEEEeCCCCHHhhcCCCcE
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      +...+.++|.|+||+|.+|..++..|++.|.  +|+++|++.  ....+..+... ......-......+.++++.++|+
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDi   95 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHF   95 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCe
Confidence            3455667999999999999999999999998  999999987  22333333221 111111112222456778999999


Q ss_pred             EEEcCCCC
Q 020049           92 VIIPAGVP   99 (332)
Q Consensus        92 Vi~~~g~~   99 (332)
                      ||.++|.+
T Consensus        96 lin~Ag~g  103 (191)
T d1luaa1          96 VFTAGAIG  103 (191)
T ss_dssp             EEECCCTT
T ss_pred             eeecCccc
Confidence            99998764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.63  E-value=7.6e-05  Score=62.22  Aligned_cols=110  Identities=15%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEE-EeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +++|.|+||+|++|++++..|+..|+...++.+++++  ....++....  ..+.. .....++.++++++|.||++++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~--~~~~~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA--QGKEKIGGEA--DVFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH--HHHHHTTCCT--TEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH--HHHHhccCCc--EEEEeeeccccccccccccceeeEEEEee
Confidence            4689999999999999999999988733455444433  1222222211  11121 11112456788999999999765


Q ss_pred             CCCCC---------------CChhhhHhhhHHHHHHHHHHHHhhCCCcEE
Q 020049           99 PRKPG---------------MTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (332)
Q Consensus        99 ~~~~g---------------~~r~~~~~~n~~~~~~i~~~i~~~~p~a~v  133 (332)
                      .....               .........|....+.++............
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  128 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccc
Confidence            32100               112233455677777888777766654433

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00011  Score=58.23  Aligned_cols=92  Identities=11%  Similarity=0.104  Sum_probs=58.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      +||+|+||+|.||+-+...|+.++  ...+++++......+.........  ..+..   ..+ .++++++|++|++.+ 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~~---~~~-~~~~~~~DivF~a~~-   74 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-LEALKALDIIVTCQG-   74 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCEE---TTC-HHHHHTCSEEEECSC-
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeeec---ccc-hhhhhcCcEEEEecC-
Confidence            489999999999999998776654  346888887655222111111111  11111   234 467899999999963 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                                     ....+++++.+.+...+++||
T Consensus        75 ---------------~~~s~~~~~~~~~~g~~~~VI   95 (146)
T d1t4ba1          75 ---------------GDYTNEIYPKLRESGWQGYWI   95 (146)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCCEEE
T ss_pred             ---------------chHHHHhhHHHHhcCCCeecc
Confidence                           455667777777665555443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.61  E-value=3.5e-05  Score=61.39  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=46.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||+|||. |.||+.++..|.+.|+  ++..+|......... .....   .+..     +..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~~-----~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVTE-----TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCEE-----CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---cccc-----cHHHHHhhcCeEEEEe
Confidence            79999999 9999999999999998  899999766222111 11111   1111     2368899999999984

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.60  E-value=0.00047  Score=59.37  Aligned_cols=154  Identities=19%  Similarity=0.252  Sum_probs=89.7

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           22 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        22 kI-~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      || .|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++.+..  .++..+. +-+|.          .+.+.
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            66 6779999999999999999998  999999987  344455565432  2222221 11231          13356


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||......   .+.   ...+..|+    ...+...+.+.+....+.|++++......            +.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~------------~~  145 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV------------GN  145 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc------------cC
Confidence            8999999998753221   222   22334454    44455666667777777777765433211            11


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+.-.-..+.+.+|..++  +..|++-.+
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  179 (255)
T d1gega_         146 PELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGY  179 (255)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccccchhCHHHHHhhHHHHHHHhh--hhCcEEEEE
Confidence            2111223322223456777787775  555654444

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.59  E-value=0.00011  Score=58.36  Aligned_cols=112  Identities=12%  Similarity=0.097  Sum_probs=68.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      |||+||||+|++|+-+...|....  ...++.++......+...++.    ........ ..+ .+.++++|+|+++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~----~~~~~~~~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFG----KDAGMLHD-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSS----SCCCBCEE-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccC----Ccceeeec-ccc-hhhhccccEEEEecC-
Confidence            799999999999999998776543  245888876654222211111    11111111 234 477899999999852 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhh
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  169 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld  169 (332)
                                     -...+++++.+.+.+.+.+|  +.|-.|.             .+++.-++++.-+-
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEiN  114 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPVN  114 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCcC
Confidence                           34566888888877777755  4443332             24555667775433

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=0.00011  Score=56.88  Aligned_cols=68  Identities=12%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC--CCHHhh-cCCCcEEEEcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPA   96 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~--~d~~~a-~~~aDiVi~~~   96 (332)
                      |++|+|+ |.+|+.++..|...|+  +++++|.++.  .+.++.+..  ..+.....+  ..++++ +.+||.||++.
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~--~~~~~~~~~--~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYA--THAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHHTTTTC--SEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHH--HHHHHHHhC--CcceeeecccchhhhccCCccccEEEEEc
Confidence            6899999 9999999999999998  8999999862  223333322  222211111  123333 78999988874

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.00012  Score=62.94  Aligned_cols=154  Identities=16%  Similarity=0.195  Sum_probs=89.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCC------HHhhcCCCcE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ------LENALTGMDL   91 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d------~~~a~~~aDi   91 (332)
                      .+++.|+||++.+|..+|..|++.|.  +|++.|+++  ++..+.++...   ..+. . .-+|      .-+.+..-|+
T Consensus         7 GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~---~~~~-~-Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           7 GRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGI---EPVC-V-DLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC---EEEE-C-CTTCHHHHHHHHTTCCCCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCC---eEEE-E-eCCCHHHHHHHHHHhCCceE
Confidence            35899999999999999999999998  999999986  22233333211   1111 0 1122      1234578899


Q ss_pred             EEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCc
Q 020049           92 VIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (332)
Q Consensus        92 Vi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~k  161 (332)
                      +|..||......   .+.   ...+..|+    ...+.+++.+.+....+.||+++.-....            +.|..-
T Consensus        80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~~~~~~  147 (244)
T d1pr9a_          80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR------------AVTNHS  147 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBH
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc------------cccchh
Confidence            999998754321   222   22334444    34556666555555567777775432111            122222


Q ss_pred             eEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       162 viG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       148 ~Y~asKaal~~lt~~lA~el~--~~gIrvN~I~  178 (244)
T d1pr9a_         148 VYCSTKGALDMLTKVMALELG--PHKIRVNAVN  178 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhhhhHHHHHHHHHHHHHHhC--CCcEEEEEEe
Confidence            333333233456778888776  5666555553

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.46  E-value=5.7e-05  Score=60.11  Aligned_cols=65  Identities=15%  Similarity=0.119  Sum_probs=44.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |||++||+ |.||++++..|...+. .+|.++|+++.+  ..++....   .+...   .+. ++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~--~~~l~~~~---~~~~~---~~~-~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---ATL-PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SSC-CCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhH--HHHhhhhc---ccccc---ccc-ccccccceEEEec
Confidence            79999999 9999999997776652 299999997622  12222211   12322   232 5588999999985

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=0.00016  Score=63.42  Aligned_cols=53  Identities=11%  Similarity=-0.049  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCC
Q 020049          249 YAAVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLN  305 (332)
Q Consensus       249 ~a~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~  305 (332)
                      ..++++++||.+|++.   ++.+ +.++|.+   |++.++++||+|+++|+.++-. +++.
T Consensus       153 e~a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~v-g~~~  209 (278)
T d1vjta2         153 EQHIPFINAIANNKRV---RLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKV-EPDL  209 (278)
T ss_dssp             CSHHHHHHHHHHCCCE---EEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCC-CSCC
T ss_pred             HHHHHHHHHHhCCCCe---EEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeec-CCCC
Confidence            5668999999999863   4444 4678886   7899999999999999999865 3443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.40  E-value=6.6e-05  Score=66.82  Aligned_cols=172  Identities=12%  Similarity=0.011  Sum_probs=93.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHH----HHHHhcCCCCCeEEEEe-CCCCH---Hhhc--C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV----TADISHMDTGAVVRGFL-GQPQL---ENAL--T   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~----~~dl~~~~~~~~v~~~~-~~~d~---~~a~--~   87 (332)
                      +|+.|+||+|++|++++..|++.|+  +|+.+|+...   ...    ..+.... ....+..+. ..++.   ..++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHHHHHHHhhh
Confidence            4799999999999999999999999  9999997430   000    0111111 112233221 12232   2223  4


Q ss_pred             CCcEEEEcCCCCCCCC--CChhhhHhhhHHHHHHHHHHHHhhC----CCcEEEEecCC-CCchHHHHHHHHHHhCCCCCC
Q 020049           88 GMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLISNP-VNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~----p~a~viv~tNP-~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      +.|+|+++|+......  .........|......+...+.+..    ...+++..+.. +.....   .......-+.|.
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~---~~~~E~~~~~p~  155 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP---PPQSETTPFHPR  155 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC---SSBCTTSCCCCC
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC---CCCCCCCCCCCc
Confidence            6699999987643211  2334455677777777777666443    22333333211 100000   000011113345


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCc-eeEEEecCC
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG  198 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~-~~v~G~hg~  198 (332)
                      ..+|.+.+...++....++..+++...++ ..|+|.+..
T Consensus       156 ~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         156 SPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            56777777777777777888887654443 457786543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.40  E-value=0.001  Score=57.30  Aligned_cols=157  Identities=17%  Similarity=0.123  Sum_probs=88.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..++..|++.|.  +|++.|+++  ++....++.......++..+. +-+|.          .+.+.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4688899999999999999999998  999999986  233333343322222333221 11232          12346


Q ss_pred             CCcEEEEcCCCCCCCC----CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG----MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g----~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .-|++|..||.....+    .+.   ...+..|+    ...+.+.+.+.+.. .+.||+++......            +
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~------------~  149 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR------------G  149 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS------------B
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc------------C
Confidence            7999999998643222    222   22334454    44445555555443 55666665432211            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       150 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i~  185 (258)
T d1iy8a_         150 IGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAIA  185 (258)
T ss_dssp             CSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEEe
Confidence            22222233332233456777888775  5667655554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.40  E-value=5.6e-05  Score=65.27  Aligned_cols=89  Identities=21%  Similarity=0.197  Sum_probs=58.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|...|+  +|+.+|+++.     |+.+            ..++++.++  +.|+||.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d------------~~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITN------------VLAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCC------------HHHHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999999888  9999997641     1111            012234443  56999998765


Q ss_pred             CCCCC--CChhhhHhhhHHHHHHHHHHHHhhC
Q 020049           99 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCC  128 (332)
Q Consensus        99 ~~~~g--~~r~~~~~~n~~~~~~i~~~i~~~~  128 (332)
                      .....  .........|......+.+......
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~   94 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVG   94 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred             cccccccccchhhccccccccccccccccccc
Confidence            42111  1223444556666666666665543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.39  E-value=8.7e-05  Score=59.96  Aligned_cols=81  Identities=21%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      .+.+|-||+|+|| |.+|.+-+...+..|-  +|..+|.+. ......+....  ..... .+....+++.+++||+||-
T Consensus        28 ~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~--~~~~~-~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          28 PGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS--RVELL-YSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             TTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG--GSEEE-ECCHHHHHHHHHTCSEEEE
T ss_pred             CCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc--cceee-hhhhhhHHHhhccCcEEEE
Confidence            3457889999999 9999999888887776  999999986 22222222211  12222 2223457889999999999


Q ss_pred             cCCCCCCC
Q 020049           95 PAGVPRKP  102 (332)
Q Consensus        95 ~~g~~~~~  102 (332)
                      ++-.|.+.
T Consensus       102 aalipG~~  109 (168)
T d1pjca1         102 AVLVPGRR  109 (168)
T ss_dssp             CCCCTTSS
T ss_pred             eeecCCcc
Confidence            98777543

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=0.00035  Score=62.13  Aligned_cols=61  Identities=13%  Similarity=0.036  Sum_probs=48.0

Q ss_pred             HHHHHHHHHcCCCCCCcEEEe-eEEeCCC---CCccEEEEeEEEcCCceEEeccCCCCCHHHHH-HHHH
Q 020049          251 AVKFADACLRGLRGDAGVVEC-AFVASQV---TELPFFASKVRLGRQGAEEIFQLGPLNEYERI-GLEK  314 (332)
Q Consensus       251 ~~~ii~ai~~~~~~~~~v~~~-~~~~g~~---~~~~~~s~Pv~ig~~Gv~~i~~~~~L~~~E~~-~l~~  314 (332)
                      ++++++||.+|++.   ++.+ +.++|.+   |+|.++++||+|+++|+.++...++|++.-.+ +++.
T Consensus       184 a~~ii~ai~~~~~~---~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~~  249 (308)
T d1obba2         184 HIPFIDALLNDNKA---RFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRP  249 (308)
T ss_dssp             HHHHHHHHHHCCCE---EEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHH
T ss_pred             HHHHHHHHHcCCCe---EEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHHH
Confidence            78999999999863   4444 4678886   78999999999999999998632589987654 4544

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=0.00016  Score=62.02  Aligned_cols=153  Identities=16%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCH------HhhcCCCcEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL------ENALTGMDLV   92 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~------~~a~~~aDiV   92 (332)
                      +++.|+||++.+|..+|..|+..|.  +|++.|+++  +.....++...   ..+. . .-+|.      -+.+..-|++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~---~~~~-~-Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGI---EPVC-V-DLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC---EEEE-C-CTTCHHHHHHHHTTCCCCSEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC---eEEE-E-eCCCHHHHHHHHHHcCCCeEE
Confidence            5789999999999999999999998  999999876  22222333211   1111 1 11232      1234678999


Q ss_pred             EEcCCCCCCCC---CCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           93 IIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        93 i~~~g~~~~~g---~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      |..||......   .+.   ...+..|+.    ..+...+.+.+....+.||+++......            +.|..-.
T Consensus        79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~------------~~~~~~~  146 (242)
T d1cyda_          79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV------------TFPNLIT  146 (242)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS------------CCTTBHH
T ss_pred             EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc------------cCCcccc
Confidence            99998754321   222   223334443    4445555555555566777765432111            1222222


Q ss_pred             EEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      ++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       147 Y~asKaal~~lt~~lA~e~~--~~gIrvN~I~  176 (242)
T d1cyda_         147 YSSTKGAMTMLTKAMAMELG--PHKIRVNSVN  176 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ccchHHHHHHHHHHHHHHhC--ccCeecccCC
Confidence            33333233456777887775  5566555553

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.35  E-value=0.00015  Score=63.09  Aligned_cols=76  Identities=17%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHHHH---HHhcCCCCCeEEE--EeCCCCHHhhcCCCc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTA---DISHMDTGAVVRG--FLGQPQLENALTGMD   90 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~~~---dl~~~~~~~~v~~--~~~~~d~~~a~~~aD   90 (332)
                      +++||.|+||+|++|++++..|+..|+  +|+.++++.  . .....   .+.+..  ..+..  ......+.+++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~--v~~v~~d~~d~~~~~~~~~~~~   77 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLG--AKLIEASLDDHQRLVDALKQVD   77 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTT--CEEECCCSSCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhccCC--cEEEEeecccchhhhhhccCcc
Confidence            456999999999999999999999987  888888765  1 11111   222221  12111  111123557889999


Q ss_pred             EEEEcCCC
Q 020049           91 LVIIPAGV   98 (332)
Q Consensus        91 iVi~~~g~   98 (332)
                      .++.+++.
T Consensus        78 ~~~~~~~~   85 (312)
T d1qyda_          78 VVISALAG   85 (312)
T ss_dssp             EEEECCCC
T ss_pred             hhhhhhhh
Confidence            99998653

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.32  E-value=4e-05  Score=66.55  Aligned_cols=98  Identities=16%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEEEcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi~~~g~   98 (332)
                      |||.|+||+|++|++++..|...+   +++.+|.+... ...|+.            ....+++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~------------~~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFS------------NPKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTT------------CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCC------------CHHHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999888766   45666665410 000110            0112344454  35999999975


Q ss_pred             CCC--CCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe
Q 020049           99 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (332)
Q Consensus        99 ~~~--~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~  136 (332)
                      ...  ...........|......+.+...+..  .+++.+
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~~~~  102 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETG--AWVVHY  102 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTT--CEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhccc--cccccc
Confidence            421  123344556778888888888887654  344444

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.31  E-value=0.0024  Score=55.02  Aligned_cols=156  Identities=14%  Similarity=0.112  Sum_probs=91.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH---H-------hhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---E-------NAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~   86 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|++.   ++..+.++....  .++..+. +-+|.   +       +.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4688889999999999999999998  999999875   233344454432  2333221 11231   1       223


Q ss_pred             CCCcEEEEcCCCCCCCC---CChh---hhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r~---~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..-|++|..+|......   .+..   ..+..|    ....+.+++.+.+....+.|+++|......            +
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~------------~  151 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI------------P  151 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS------------C
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc------------c
Confidence            57899999998754221   2222   223444    455666677777666566666665433221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       152 ~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  187 (261)
T d1geea_         152 WPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIG  187 (261)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CccccccccCCccchhhHHHHHHHhh--hhCcEEEEEe
Confidence            22222233333333456778888776  5566655553

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.31  E-value=0.0014  Score=58.34  Aligned_cols=105  Identities=14%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC-CC----HHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d----~~~a~~~aDiVi   93 (332)
                      ++++|+|+||+|++|++++..|+..|+  +|+.+-++........+...   ..+..+... .|    +..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~---~~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAI---PNVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTS---TTEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhccc---CCCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            346899999999999999999999988  78887665522222333322   222222111 22    456889999988


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      ......          ...+....+.+++...+.+-..+++..|-
T Consensus        77 ~~~~~~----------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~  111 (350)
T d1xgka_          77 INTTSQ----------AGDEIAIGKDLADAAKRAGTIQHYIYSSM  111 (350)
T ss_dssp             ECCCST----------TSCHHHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred             eecccc----------cchhhhhhhHHHHHHHHhCCCceEEEeec
Confidence            864221          12345555667777776664444554443

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.30  E-value=0.0017  Score=55.76  Aligned_cols=152  Identities=14%  Similarity=0.147  Sum_probs=88.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~~   87 (332)
                      +++.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++..     +...+. +-+|.+          +.+.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999998  999999986  3344444421     122111 112211          2335


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..+|......   .+   ....+..|+    ...+.+++.+.+....+.||+++......            +.
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------------~~  146 (256)
T d1k2wa_          79 SIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR------------GE  146 (256)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS------------CC
T ss_pred             CccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc------------cc
Confidence            7899999998653221   12   223344454    44455666666665567777776433211            12


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       147 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V  180 (256)
T d1k2wa_         147 ALVGVYCATKAAVISLTQSAGLNLI--RHGINVNAI  180 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccccchhhhhhHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            2222233332233456777888776  555644443

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.29  E-value=0.0013  Score=56.35  Aligned_cols=156  Identities=15%  Similarity=0.051  Sum_probs=88.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++...   ..+..+. +-+|.          .+.+.
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4788889999999999999999998  999999976  23333444321   2233222 12232          13346


Q ss_pred             CCcEEEEcCCCCCCC---CCChh---hhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~r~---~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||.....   ..+..   ..+..|+    ...+..++.|.+....+.||+++......            +.
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~------------~~  149 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV------------GD  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS------------CC
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec------------cC
Confidence            789999999865322   12222   2334444    45566666666655566777776533221            12


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+.-.-..+.+.+|..+.+.+..|++-.+
T Consensus       150 ~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I  185 (251)
T d1zk4a1         150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTV  185 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEE
Confidence            222223333222334556666654334566655444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.002  Score=55.16  Aligned_cols=115  Identities=14%  Similarity=0.178  Sum_probs=68.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhh
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENA   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   85 (332)
                      +.+.+.|+||++.+|..+|..|++.|.  +|++.|+++  +...+.++.+.. ..++..+. +-+|.          .+.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999998  999999986  233344443321 12222221 11221          133


Q ss_pred             cCCCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEec
Q 020049           86 LTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      +..-|++|..||......   .+.   ...+..|+    ...+.+++.|.+.. .+.||+++
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~  141 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIG  141 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEEC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccc
Confidence            457999999998754322   222   22334454    44555555555443 44555553

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.25  E-value=0.00021  Score=61.59  Aligned_cols=73  Identities=21%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc----HHHHH---HHhcCCCCCeEEE--EeCCCCHHhhcCCCcE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTA---DISHMDTGAVVRG--FLGQPQLENALTGMDL   91 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~---dl~~~~~~~~v~~--~~~~~d~~~a~~~aDi   91 (332)
                      +||.|+||+|++|++++..|+..|+  +|+.++++..    .....   .+....  ..+..  ........++++++|.
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASG--ANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTT--CEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhccCC--cEEEEeecccchhhhhhhhhcee
Confidence            4899999999999999999999998  8999998761    11111   122211  12211  0001234577899999


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      |+..++
T Consensus        80 vi~~~~   85 (307)
T d1qyca_          80 VISTVG   85 (307)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            998864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.24  E-value=0.005  Score=53.03  Aligned_cols=163  Identities=16%  Similarity=0.107  Sum_probs=92.9

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC--------
Q 020049           14 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ--------   81 (332)
Q Consensus        14 ~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d--------   81 (332)
                      ++.+-+.+++.|+||++.+|..++..|+..|.  +|++.|.+.   ++..+..+....  .++..+. ..+|        
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~   87 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMF   87 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHH
Confidence            44555667899999999999999999999998  999999876   233333444332  2222211 1223        


Q ss_pred             --HHhhcCCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHH
Q 020049           82 --LENALTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        82 --~~~a~~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                        ..+.+..-|++|..+|......   .+   ....+..|+.....+.+.+.++- ..+.+++++.-....         
T Consensus        88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~---------  158 (272)
T d1g0oa_          88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA---------  158 (272)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC---------
T ss_pred             HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc---------
Confidence              2244567899999988653322   12   23344556666666666666554 345555554322111         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                        ...+..=.++.+.-.-..+.+.+|..++  +..|++-.+
T Consensus       159 --~~~~~~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I  195 (272)
T d1g0oa_         159 --KAVPKHAVYSGSKGAIETFARCMAIDMA--DKKITVNVV  195 (272)
T ss_dssp             --SSCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --ccccchhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEE
Confidence              1111112233332233456788888876  455644444

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.22  E-value=0.002  Score=55.21  Aligned_cols=154  Identities=15%  Similarity=0.123  Sum_probs=89.0

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           22 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        22 kI-~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      || .|+||++.+|..+|..|++.|.  +|++.|+++  ++..+.++....  .++..+. .-+|.          .+.+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            56 6789999999999999999998  999999986  344455565432  2233222 11231          23346


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhh-----CCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~-----~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .-|++|..||......   .+   ..+.+..|+.....+.+.+-++     ...+.||+++......            +
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~------------~  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ------------G  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS------------C
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc------------c
Confidence            7899999998754322   12   2344566766666666655433     1245566664322111            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  181 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAV  181 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            22212233332233456778888875  555655444

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.22  E-value=0.00087  Score=52.74  Aligned_cols=54  Identities=22%  Similarity=0.351  Sum_probs=43.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..+||+|||+.|.||+.+|..|...|+  +|..+|++...                      ..++...++|+++.+.
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSV   61 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECS
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhcccccccc
Confidence            346999999449999999999999999  99999986521                      1245678899999874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.21  E-value=0.0011  Score=57.06  Aligned_cols=155  Identities=13%  Similarity=0.158  Sum_probs=90.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++....++....  .++..+.. -+|.          .+.+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5788999999999999999999998  999999987  344445555432  23332221 1221          23346


Q ss_pred             CCcEEEEcCCCCCCCC----CCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g----~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .-|++|..+|.....+    .+.   ...+..|+.    ..+.+.+.+.+. ..+.||+++....           . .+
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~-~~  148 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------V-KG  148 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------H-SC
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------c-cC
Confidence            8999999998643222    222   223344544    455555555544 4667777754221           1 12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+.-....|.+.+|..++  +..|++-.+-
T Consensus       149 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  184 (260)
T d1zema1         149 PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAIS  184 (260)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEec
Confidence            23222344433334457788888876  5566555544

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.20  E-value=0.012  Score=50.31  Aligned_cols=156  Identities=12%  Similarity=0.081  Sum_probs=88.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEE-eCCCCHH----------hh
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQLE----------NA   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~----------~a   85 (332)
                      +.+++.|+||++.+|..+|..|++.|.  +|++.|+++  ++.....+.....  .+..+ ..-++.+          +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999987  3333444544332  22221 1122322          22


Q ss_pred             cC-CCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           86 LT-GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        86 ~~-~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      +. --|++|..+|......   .+.   ...+..|    ....+.+.+.+.+. +.+.+|+++......           
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~~-----------  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGFS-----------  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGTS-----------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-ccccccccccccccc-----------
Confidence            32 3789998888654322   122   2223333    34455555666554 455666665443222           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       +.|..-.++.+.-.-..+.+.+|+.++  +..|++-.+
T Consensus       149 -~~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  184 (258)
T d1ae1a_         149 -ALPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSV  184 (258)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -ccccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEE
Confidence             223222333332233456778888887  555544443

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.20  E-value=0.003  Score=53.99  Aligned_cols=154  Identities=16%  Similarity=0.204  Sum_probs=90.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|+++|+++  ++..+.++....  .++..+. .-+|.          .+.+.
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            3466779999999999999999998  999999986  344455565543  2233221 12232          13346


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..+|......   .+.   ...+..|+    ...+...+.+.+. ..+.||++|.....          .  +.
T Consensus        87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~----------~--~~  153 (251)
T d2c07a1          87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINN-RYGRIINISSIVGL----------T--GN  153 (251)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH----------H--CC
T ss_pred             CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccC-CCeEEEEECCHHhc----------C--CC
Confidence            8999999988654322   222   22333443    4455566666655 35677777643211          1  22


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       154 ~~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V  187 (251)
T d2c07a1         154 VGQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  187 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            3222344443334456778888775  555655444

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.18  E-value=0.00029  Score=60.50  Aligned_cols=151  Identities=16%  Similarity=0.179  Sum_probs=86.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|++.|.  +|++.|+++  ++....++...     ...+. +-+|.          .+.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAFG   79 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            5688889999999999999999998  999999987  33344444321     11111 11221          23346


Q ss_pred             CCcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||.....   ..+.   ...+.-|+.    ..+...+.+.+. +.+.||+++......            +.
T Consensus        80 ~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------~~  146 (244)
T d1nffa_          80 GLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGLA------------GT  146 (244)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------CC
T ss_pred             CCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEecccccccc------------cc
Confidence            789999999865322   1222   223344543    444555555544 456777776543221            12


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       147 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  180 (244)
T d1nffa_         147 VACHGYTATKFAVRGLTKSTALELG--PSGIRVNSI  180 (244)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence            2222233333233456777787775  555654444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0041  Score=53.24  Aligned_cols=156  Identities=15%  Similarity=0.158  Sum_probs=89.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~   86 (332)
                      .+.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++....  .++..+. .-+|.          .+.+
T Consensus        11 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999998  999999876  334444555432  2222221 12232          2334


Q ss_pred             CCCcEEEEcCCCCCCC--CCChh---hhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           87 TGMDLVIIPAGVPRKP--GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~--g~~r~---~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ..-|++|..+|.....  ..+..   ..+.-|+    ...+.+++.+.+.. .+.||+++.-....            +.
T Consensus        87 g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~~------------~~  153 (255)
T d1fmca_          87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAEN------------KN  153 (255)
T ss_dssp             SSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC------------CC
T ss_pred             CCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchhc------------cc
Confidence            6899999999865322  22322   2233443    44556666666554 45556654322111            12


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      |..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       154 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  188 (255)
T d1fmca_         154 INMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEee
Confidence            2222233333233456777887775  5566554443

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.17  E-value=0.0011  Score=57.44  Aligned_cols=156  Identities=17%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~   86 (332)
                      .+.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++....   .+..+. +-+|.          .+.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35788899999999999999999998  999999987  334444554322   122211 11221          1334


Q ss_pred             CCCcEEEEcCCCCCCC-----CCCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 TGMDLVIIPAGVPRKP-----GMTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~-----g~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      ...|++|..+|.....     ..+.   ...+..|+    ...+.+.+.|.+.. .+.+|+++......           
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~-----------  148 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFT-----------  148 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTC-----------
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCccccccccccc-----------
Confidence            5789999999864322     1222   22234444    44555566665443 45566655432211           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .+.+..-.++.+.-....+.+.+|..++  +..|++-.+-
T Consensus       149 ~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  186 (268)
T d2bgka1         149 AGEGVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCVS  186 (268)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccccccchhHHHHHhCHHHHHHHhC--hhCeEEEecC
Confidence            1111111233333333456777887776  5556544443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.17  E-value=0.00021  Score=57.75  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHh
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADIS   65 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~   65 (332)
                      |||+||||+|.+|+++|..|+..|+  +|++.++++  +...+.++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            7999996669999999999999999  999999987  333444444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0051  Score=52.35  Aligned_cols=118  Identities=20%  Similarity=0.278  Sum_probs=75.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~   86 (332)
                      .+.+.|+||++.+|..+|..|++.|.  +|++.|+++  ++..+.++....  .++..+. +-+|.+          +.+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            34688889999999999999999998  999999987  344555565432  3333222 223422          345


Q ss_pred             CCCcEEEEcCCCCCCCCC--Ch----hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCc
Q 020049           87 TGMDLVIIPAGVPRKPGM--TR----DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~--~r----~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~  142 (332)
                      ...|++|..+|.......  ..    .+.+.-|    +...+.+.+.+.+. ..+.||+++.....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhc-CCceEEEeecchhc
Confidence            679999999987643321  11    2223333    45566677777655 46777777665544

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.001  Score=57.60  Aligned_cols=122  Identities=15%  Similarity=0.150  Sum_probs=71.3

Q ss_pred             hhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC-------
Q 020049           12 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ-------   81 (332)
Q Consensus        12 ~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d-------   81 (332)
                      |-+|+--+.+++.|+||++.+|..+|..|+..|.  +|++.|+++  ++....++.... ......+.. ..+       
T Consensus         6 ~f~~~~L~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~   82 (269)
T d1xu9a_           6 EFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQF   82 (269)
T ss_dssp             CCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHH
T ss_pred             cCCccccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHH
Confidence            4455555567899999999999999999999998  999999987  333333333222 122222211 111       


Q ss_pred             ---HHhhcCCCcEEEEcCCCCCCCC---CChh---hhHhhh----HHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           82 ---LENALTGMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        82 ---~~~a~~~aDiVi~~~g~~~~~g---~~r~---~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                         ..+.+...|+++..+|......   .+..   ..+.-|    ....+.+.+.+++.  ++.+|+++.
T Consensus        83 ~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS  150 (269)
T d1xu9a_          83 VAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSS  150 (269)
T ss_dssp             HHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred             HHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEecc
Confidence               1223457899999887543221   2222   223334    34556666666543  455666543

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.11  E-value=0.0079  Score=51.08  Aligned_cols=156  Identities=17%  Similarity=0.192  Sum_probs=87.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLE----------NALTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~~~   88 (332)
                      .+.+.|+||++.+|..+|..|+..|.  .|++.|+++.+.....+....  .++..+. +-+|.+          +.+..
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            34688899999999999999999998  999999987332222233322  2222221 112321          23467


Q ss_pred             CcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCC
Q 020049           89 MDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~  158 (332)
                      -|++|..||......   .+.   ...+..|    ....+.+.+.+.+.. .+.||++|......            +.|
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~------------~~~  147 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYWL------------KIE  147 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGGS------------CCS
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhcc------------cCc
Confidence            999999998753221   222   2233344    345556666666554 56667765432111            122


Q ss_pred             CCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       159 ~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      ..-.++.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       148 ~~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  181 (247)
T d2ew8a1         148 AYTHYISTKAANIGFTRALASDLG--KDGITVNAIA  181 (247)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ccccchhhhccHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            222233332223346677777775  5556554443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.10  E-value=0.0042  Score=53.25  Aligned_cols=156  Identities=13%  Similarity=0.094  Sum_probs=87.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCC---H-------Hhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~   86 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++   ++....++.... ..++..+. +-+|   .       .+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4678889999999999999999998  999999976   222233332211 11222211 1122   1       2334


Q ss_pred             CCCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ..-|++|..||......   .+.   ...+..|    ....+.+.+.+.+.. .+.||+++......            +
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~------------~  148 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV------------A  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS------------C
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccccccee------------c
Confidence            57899999998754321   122   2233444    445566666666553 56677775433221            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  184 (260)
T d1x1ta1         149 SANKSAYVAAKHGVVGFTKVTALETA--GQGITANAIC  184 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             cCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEEe
Confidence            22212233332233456778888876  5666544443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.09  E-value=0.0051  Score=53.05  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=88.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeC-CCCH----------Hhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL----------ENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~-~~d~----------~~a~   86 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++....++..... ..++..+.. -+|.          .+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4788999999999999999999998  999999987  3444555655432 233443221 1231          1234


Q ss_pred             CCCcEEEEcCCCCCCCC-------CC---hhhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPRKPG-------MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g-------~~---r~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                      ..-|++|..+|......       ++   ....+.-|+.    ..+.+.+.+.+. +.++|++.|......         
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~Ss~a~~~---------  153 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSSIVAGPQ---------  153 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCGGGSSS---------
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccchhcccc---------
Confidence            57899999998753221       11   1222334544    445555556543 455555544222111         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         +.|..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       154 ---~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  189 (272)
T d1xkqa_         154 ---AQPDFLYYAIAKAALDQYTRSTAIDLA--KFGIRVNSV  189 (272)
T ss_dssp             ---CCCSSHHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             ---CCCCcchhhhHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence               122222233333233456777887775  555655444

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0036  Score=53.49  Aligned_cols=115  Identities=16%  Similarity=0.103  Sum_probs=72.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~~   87 (332)
                      +.+.|+||++.+|..+|..|++.|.  +|++.|++.  +.....++.......++..+. +-+|.+          +.+.
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4678889999999999999999998  999999986  233344454432223333322 123321          2345


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhH----HHHHHHHHHHHhhC--CCcEEEEecCC
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKCC--PNATVNLISNP  139 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~----~~~~~i~~~i~~~~--p~a~viv~tNP  139 (332)
                      .-|++|..||.....  +..+.+..|+    ...+...+.+.+..  ..+.||+++..
T Consensus        82 ~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~  137 (254)
T d2gdza1          82 RLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  137 (254)
T ss_dssp             CCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccH
Confidence            789999999875432  3334444444    45566666665543  24677777543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.07  E-value=0.00021  Score=57.28  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCC---CCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~---~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|+|| |.+|+++|..|...|+  +|+++|++..  .+.++..... .........   ....+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQ-HSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCT-TEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhccc-ccccccccccchhhhHhhhhccceeEeec
Confidence            58999999 9999999999999998  9999999753  3334444321 111111111   12346678899888763

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00017  Score=61.97  Aligned_cols=154  Identities=15%  Similarity=0.149  Sum_probs=87.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC------HHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ------LENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d------~~~a~~~aDiVi~   94 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++.  ...++.+.. ....... ...+      ..+.+..-|++|.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~--~l~~~~~~~-~~~~~~~-d~~~~~~~~~~~~~~~~id~lVn   80 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINES--KLQELEKYP-GIQTRVL-DVTKKKQIDQFANEVERLDVLFN   80 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHH--HHGGGGGST-TEEEEEC-CTTCHHHHHHHHHHCSCCSEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHH--HHHHHHhcc-CCceeee-eccccccccccccccccceeEEe
Confidence            4688889999999999999999998  9999998752  112222221 1111111 1111      2244578999999


Q ss_pred             cCCCCCCCC---CChh---hhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEE
Q 020049           95 PAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (332)
Q Consensus        95 ~~g~~~~~g---~~r~---~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG  164 (332)
                      .+|.+....   .+..   ..+.-|    ....+.+.+.+.+. +.+.|++++......           .+++..-.++
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~-----------~~~~~~~~Y~  148 (245)
T d2ag5a1          81 VAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV-----------KGVVNRCVYS  148 (245)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT-----------BCCTTBHHHH
T ss_pred             cccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc-----------CCccchhHHH
Confidence            998764321   2222   222334    34455555555544 466677776543322           1222222344


Q ss_pred             eehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       165 ~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       149 ~sKaal~~l~r~lA~e~~--~~gIrvN~I~  176 (245)
T d2ag5a1         149 TTKAAVIGLTKSVAADFI--QQGIRCNCVC  176 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            433334457788888886  5566655553

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.06  E-value=0.00059  Score=55.66  Aligned_cols=86  Identities=21%  Similarity=0.178  Sum_probs=55.0

Q ss_pred             hccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCC------eEEE----------
Q 020049           13 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGA------VVRG----------   75 (332)
Q Consensus        13 ~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~------~v~~----------   75 (332)
                      +..++.+|-||+|||| |.+|.+-+...+..|-  .|..+|++. ......++.......      ....          
T Consensus        22 ~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~   98 (183)
T d1l7da1          22 TAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGE   98 (183)
T ss_dssp             ETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC--------------------
T ss_pred             cccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCH
Confidence            4455677889999999 9999998888776666  999999987 444444332110000      0000          


Q ss_pred             -EeC--CCCHHhhcCCCcEEEEcCCCCCC
Q 020049           76 -FLG--QPQLENALTGMDLVIIPAGVPRK  101 (332)
Q Consensus        76 -~~~--~~d~~~a~~~aDiVi~~~g~~~~  101 (332)
                       +..  ...+.+.+++||+||.++-.|.+
T Consensus        99 ~~~~~~~~~l~~~l~~aDlVI~talipG~  127 (183)
T d1l7da1          99 EFRKKQAEAVLKELVKTDIAITTALIPGK  127 (183)
T ss_dssp             ---CCHHHHHHHHHTTCSEEEECCCCTTS
T ss_pred             HHHHHHHHHHHHHHHhhhhheeeeecCCc
Confidence             000  01234568999999999877643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.05  E-value=0.0046  Score=53.45  Aligned_cols=156  Identities=15%  Similarity=0.148  Sum_probs=86.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCC-CeEEEEeC-CCCH----------Hhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLG-QPQL----------ENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~-~~d~----------~~a~   86 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++...... .++..+.. -+|.          .+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999998  999999986  34445556544321 23433221 1231          1233


Q ss_pred             CCCcEEEEcCCCCCCCC-----CChh---hhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           87 TGMDLVIIPAGVPRKPG-----MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g-----~~r~---~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      ..-|++|..+|.....+     ++..   ..+..|+.    ..+.+.+.+.+ .+.+.|++.|.-...            
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~-~~~g~ii~~ss~~~~------------  149 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIK-TKGEIVNVSSIVAGP------------  149 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSS------------
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccc-cccccccchhhhhcc------------
Confidence            56899999988643222     1222   22334444    44555555544 345666655421111            


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .+.|..-.++.+.-.-..+.+.+|..++  +..|++-.+
T Consensus       150 ~~~~~~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I  186 (274)
T d1xhla_         150 QAHSGYPYYACAKAALDQYTRCTAIDLI--QHGVRVNSV  186 (274)
T ss_dssp             SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             ccCCCCceehhhhhHHHHHHHHHHHHHh--HhCCceeee
Confidence            0111111233322223456777887775  555654444

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.04  E-value=0.0028  Score=54.46  Aligned_cols=81  Identities=15%  Similarity=0.091  Sum_probs=53.6

Q ss_pred             CCCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCC---------CHHhh
Q 020049           18 AAGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQP---------QLENA   85 (332)
Q Consensus        18 ~~~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~---------d~~~a   85 (332)
                      -+.+++.|+||+|  .+|.++|..|+..|.  +|++.|+++ +...+.++........+.....+.         ...+.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence            3456899999877  599999999999999  999999987 444444444332222222111111         12344


Q ss_pred             cCCCcEEEEcCCCCC
Q 020049           86 LTGMDLVIIPAGVPR  100 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~  100 (332)
                      +...|++|..+|...
T Consensus        81 ~g~id~lV~nag~~~   95 (274)
T d2pd4a1          81 LGSLDFIVHSVAFAP   95 (274)
T ss_dssp             TSCEEEEEECCCCCC
T ss_pred             cCCCCeEEeeccccc
Confidence            578999999988643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.01  E-value=0.0059  Score=52.32  Aligned_cols=155  Identities=13%  Similarity=0.070  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~   86 (332)
                      .+.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++....  .....+. +-+|.+          +.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999998  999999986  334444554432  2332221 112211          223


Q ss_pred             C-CCcEEEEcCCCCCCCC---CCh---hhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 T-GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~-~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      . .-|++|..+|......   .+.   ...+.-|+..    .+...+.+.+. +.+.||+++.-....            
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~------------  150 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGAL------------  150 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGTS------------
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccccccccc------------
Confidence            3 3799999998754322   222   2334455543    34444444433 456677765432211            


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      +.|..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  186 (259)
T d2ae2a_         151 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGV  186 (259)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEe
Confidence            122222233332223456777887775  555654444

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0082  Score=52.54  Aligned_cols=162  Identities=12%  Similarity=0.086  Sum_probs=92.3

Q ss_pred             ccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCC---CCCeEEEEeC-CCCHH----
Q 020049           14 AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD---TGAVVRGFLG-QPQLE----   83 (332)
Q Consensus        14 ~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~~-~~d~~----   83 (332)
                      +|+.=+.+.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++....   ...++..+.. -+|.+    
T Consensus         6 ~~g~L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~   83 (297)
T d1yxma1           6 APGLLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNN   83 (297)
T ss_dssp             CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence            45545567899999999999999999999998  999999986  344455564321   1233433221 12321    


Q ss_pred             ------hhcCCCcEEEEcCCCCCCCC---CC---hhhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHH
Q 020049           84 ------NALTGMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  147 (332)
Q Consensus        84 ------~a~~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~  147 (332)
                            +.+..-|++|..||......   .+   ....+..|+.    ..+.+++.+.+.. .+.||+++.....     
T Consensus        84 ~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~Ii~~ss~~~~-----  157 (297)
T d1yxma1          84 LVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH-GGSIVNIIVPTKA-----  157 (297)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH-CEEEEEECCCCTT-----
T ss_pred             HHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc-ccccccccccccc-----
Confidence                  23457899999988653221   12   2233445544    3445555555443 4445555433211     


Q ss_pred             HHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          148 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       148 ~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                              ++|..-.++.+.-.-..+.+.+|..++  +..|++-.+
T Consensus       158 --------~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  193 (297)
T d1yxma1         158 --------GFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCV  193 (297)
T ss_dssp             --------CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             --------cccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEe
Confidence                    122222233333233456778888875  555654444

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.96  E-value=0.0063  Score=52.82  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=85.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||+|.+|..+|..|+..|.  +|++.|+++  +...+.++.... ...+..+. .-++.          .+.+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            5689999999999999999999998  999999987  334444453221 12222211 12232          23346


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHH----HHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~----~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      ..|++|..+|......   .+   ....+..|...    ....+..+........+++.+......            +.
T Consensus       103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~------------~~  170 (294)
T d1w6ua_         103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET------------GS  170 (294)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH------------CC
T ss_pred             ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhh------------cc
Confidence            7899999988654322   11   12222333332    333444444444455555554322111            11


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      |..-.++.+.-.-..+.+.+|..++  +..|++-.+
T Consensus       171 ~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I  204 (294)
T d1w6ua_         171 GFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVI  204 (294)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEE
Confidence            2111233333333456778888876  555654444

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0025  Score=54.82  Aligned_cols=106  Identities=8%  Similarity=0.041  Sum_probs=66.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCC---HHhhcCCCcEEEEcCCCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENALTGMDLVIIPAGVP   99 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a~~~aDiVi~~~g~~   99 (332)
                      |.|+||+|++|++++..|++.|+. +|+.+|..........+.+... ..........+   ....+.++++|+..|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~-~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGIT-DILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCC-CEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCC-eEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            889999999999999999998842 7888884331111122332221 12111000000   013457889999988766


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCC
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  130 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~  130 (332)
                      .............|......+.+........
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555556666677788888888888877644

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.00059  Score=57.96  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCC---CHHhhcCCCcEEEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP---QLENALTGMDLVII   94 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~---d~~~a~~~aDiVi~   94 (332)
                      .+.+++.|+||++.+|..+|..|++.|.  +|++.|+++.  .   +.+..  ........+.   ...+.+..-|++|.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~---l~~~~--~~~~~~Dv~~~~~~~~~~~g~iD~lVn   72 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--L---LKRSG--HRYVVCDLRKDLDLLFEKVKEVDILVL   72 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--H---HHHTC--SEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--H---HHhcC--CcEEEcchHHHHHHHHHHhCCCcEEEe
Confidence            3557899999999999999999999998  9999998751  1   11111  1111100011   23466789999999


Q ss_pred             cCCCCCCCC---CChh---hhHhhhH----HHHHHHHHHHHhhCCCcEEEEec
Q 020049           95 PAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        95 ~~g~~~~~g---~~r~---~~~~~n~----~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      .||.+....   .+..   ..+..|+    ...+.+.+.+++.. .+.+|+++
T Consensus        73 nAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~  124 (234)
T d1o5ia_          73 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAIT  124 (234)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             cccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-cccccccc
Confidence            998764322   2222   2233343    35566666666543 45555554

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.93  E-value=0.0069  Score=51.81  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~   86 (332)
                      .+.+.|+||++.+|..+|..|+..|.  +|++.|+++  +.....++.     ..+..+. +-++.          .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhC-----CceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999998  999999976  222223332     1222211 11221          1334


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      ...|++|..||......   .+   ....+..|+    ...+.+.+.+.+. ..+.||+++.-....            +
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~-~~G~II~isS~~~~~------------~  144 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDA-GGGSIVNISSAAGLM------------G  144 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS------------C
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhc-CCCeecccccchhcc------------c
Confidence            68999999998753221   12   223344444    4455555565554 356777776433211            1


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .|..-.++.+.-.-..|-+.+|..++  +..|++-.+
T Consensus       145 ~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I  179 (254)
T d1hdca_         145 LALTSSYGASKWGVRGLSKLAAVELG--TDRIRVNSV  179 (254)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhC--CCceEEEEe
Confidence            22222233333233456677777765  455654444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00055  Score=58.57  Aligned_cols=152  Identities=14%  Similarity=0.213  Sum_probs=87.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++...     ...+. .-+|.          .+.+.
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGAN-----GKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCC-----CcEEEEEecCHHHhhhhhhhhhcccC
Confidence            4677889999999999999999998  999999986  33334444221     11111 11221          13345


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||......   .+.   ...+.-|+    ...+.+.+.|.+. ..+.||++|....          ..  +.
T Consensus        78 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~----------~~--~~  144 (243)
T d1q7ba_          78 EVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKK-RHGRIITIGSVVG----------TM--GN  144 (243)
T ss_dssp             SCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH----------HH--CC
T ss_pred             CcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHc-CCCEeeeecchhh----------cC--CC
Confidence            7999999998654322   122   22234444    4555666666554 3567777764221          11  22


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      |..-.++.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       145 ~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I~  179 (243)
T d1q7ba_         145 GGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVVA  179 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            3222344443334457778888775  5556544443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.87  E-value=0.0013  Score=56.39  Aligned_cols=151  Identities=15%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCC----------HHhhcCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQ----------LENALTGM   89 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d----------~~~a~~~a   89 (332)
                      +.+.|+||++.+|..+|..|++.|.  +|++.|+++. ...+..+...    .+. . +-+|          ..+.+..-
T Consensus         6 K~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~----~~~-~-Dv~~~~~v~~~~~~~~~~~G~i   77 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGA----FFQ-V-DLEDERERVRFVEEAAYALGRV   77 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCE----EEE-C-CTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCe----EEE-E-eCCCHHHHHHHHHHHHHhcCCC
Confidence            5799999999999999999999998  9999999872 2222222111    011 0 1112          22445689


Q ss_pred             cEEEEcCCCCCCC---CCCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           90 DLVIIPAGVPRKP---GMTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        90 DiVi~~~g~~~~~---g~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      |++|..||.....   ..+.   ...+.-|+    ...+.+.+.|.+. ..+.||+++......            +.|.
T Consensus        78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~~G~Ii~isS~~~~~------------~~~~  144 (248)
T d2d1ya1          78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASVQGLF------------AEQE  144 (248)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCGGGTS------------BCTT
T ss_pred             CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccc-ccccccccccccccc------------cccc
Confidence            9999999864321   1222   22334454    4455555655544 356777776433221            1222


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       145 ~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  177 (248)
T d2d1ya1         145 NAAYNASKGGLVNLTRSLALDLA--PLRIRVNAVA  177 (248)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cchhHHHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            22233332233456778888876  5556554443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0035  Score=46.65  Aligned_cols=69  Identities=19%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .+||.|||+ |.+|...+..|+..|.  .|.+++......... +.+..   .+.......+ ++.+.++++|+.+.
T Consensus        12 ~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~~-~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          12 DRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFTV-WANEG---MLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHHH-HHTTT---SCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHHH-HHhcC---CceeeccCCC-HHHhCCCcEEeecC
Confidence            358999999 9999999999999887  899999765333322 33322   2222211223 46799999999884

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.84  E-value=0.007  Score=51.83  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=85.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hh
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NA   85 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a   85 (332)
                      +.+.+.|+||++.+|..+|..|+..|.  .|++.|+++  ++..+.++....  .++..+. .-++.+          +.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSM   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999998  999999987  344444554432  2232221 112211          22


Q ss_pred             cCC-CcEEEEcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           86 LTG-MDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        86 ~~~-aDiVi~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      +.+ -|++|..+|.....   ..+.   ...+..|+.    ..+.+.+.|++.. .+.||+++......           
T Consensus        83 ~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------  150 (259)
T d1xq1a_          83 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------  150 (259)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC-----------------
T ss_pred             hCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc-----------
Confidence            323 79999999864321   2222   223344544    4455555555443 45666665433222           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       +.|..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       151 -~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V  186 (259)
T d1xq1a_         151 -SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAV  186 (259)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -cccccccccccccchhhhhHHHHHHhc--ccCeEEEEe
Confidence             122222344443333456777887775  555655544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.83  E-value=0.0074  Score=51.62  Aligned_cols=115  Identities=14%  Similarity=0.179  Sum_probs=70.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|++.|.  +|++.|+++  +...+.++.... ..++..+. +-+|.          .+.+.
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5788999999999999999999998  999999987  333333343211 12222221 11232          13456


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      .-|++|..+|......   .+.   ...+..|+    ...+.+++.+.+....+.+++.+.
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            8999999988653221   222   22334444    455666677766666666666543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0005  Score=49.76  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=49.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .+||+|+|. |..|.++|..|...|.  ++.++|.+.......++.+   ...+..  +..+ ...+.++|+||.+-|.|
T Consensus         5 ~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           5 GKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGIA   75 (93)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTSC
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCCC
Confidence            458999999 9999999999999988  8999998662111111221   122332  1222 46688999999998877


Q ss_pred             C
Q 020049          100 R  100 (332)
Q Consensus       100 ~  100 (332)
                      .
T Consensus        76 ~   76 (93)
T d2jfga1          76 L   76 (93)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.71  E-value=0.00052  Score=56.23  Aligned_cols=77  Identities=14%  Similarity=0.223  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHH-HHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +.++.||+|+||+|++|.-+...|...+.+ ||..+-.+...|. ..+..............  ....+.++++|+|+.+
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNLV--AVKDADFSNVDAVFCC   78 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCCB--CGGGCCGGGCSEEEEC
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccch--hhhhhhhcccceeeec
Confidence            356789999999999999999999887754 7776654442222 11111111011111111  1123557899999998


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      .
T Consensus        79 l   79 (183)
T d2cvoa1          79 L   79 (183)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.71  E-value=0.011  Score=50.51  Aligned_cols=157  Identities=13%  Similarity=0.116  Sum_probs=85.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC-CCeEEEEeC-CCCH----------Hhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT-GAVVRGFLG-QPQL----------ENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~-~~d~----------~~a~   86 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++..... ..++..+.. -++.          .+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3567789999999999999999998  999999987  3445555654432 223443321 1221          1234


Q ss_pred             CCCcEEEEcCCCCCCCC-------CCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           87 TGMDLVIIPAGVPRKPG-------MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g-------~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                      ..-|++|..+|......       .+.   ...+..|+.    ..+.+.+.+++. ..++|++.|--....         
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S~~~~~~---------  153 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGLH---------  153 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSSS---------
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeeeeccccc---------
Confidence            57899999998642111       121   223334444    455666666544 344554444222111         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                         +.|..-.++.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       154 ---~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  190 (264)
T d1spxa_         154 ---ATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSIS  190 (264)
T ss_dssp             ---CCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             ---cCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence               122112233333233456777887775  5566554443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0067  Score=51.75  Aligned_cols=150  Identities=17%  Similarity=0.120  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC----------HHhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++....++..      ...+. +-+|          ..+.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~------~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCC------CeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999998  999999986  2222222221      11111 1122          123346


Q ss_pred             CCcEEEEcCCCCCCCC----CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCC
Q 020049           88 GMDLVIIPAGVPRKPG----MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g----~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~  156 (332)
                      .-|++|..||.....+    .+.   ...+..|    ....+...+.|++.  .+.||+++.....            .+
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~~------------~~  144 (250)
T d1ydea1          79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVGA------------IG  144 (250)
T ss_dssp             CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHHH------------HC
T ss_pred             CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCccccccccc------------cc
Confidence            7899999998643222    222   2223344    44556666666654  3667776542211            12


Q ss_pred             CCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       157 ~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .|..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       145 ~~~~~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~  180 (250)
T d1ydea1         145 QAQAVPYVATKGAVTAMTKALALDES--PYGVRVNCIS  180 (250)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             ccCcchhHHHHhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            23222344443333456778888875  5566555443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.68  E-value=0.0089  Score=48.68  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=48.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ..++|+|+|. |.+|..++..+..-+.  +|..+|... ......+..       +..   ..++++.+++||+|++..
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~~  108 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNC  108 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECS
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhcc
Confidence            4579999999 9999999999987676  999999865 222222221       111   246789999999999975

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.01  Score=50.28  Aligned_cols=159  Identities=13%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             CCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC----------HHhh
Q 020049           19 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ----------LENA   85 (332)
Q Consensus        19 ~~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d----------~~~a   85 (332)
                      +.++|.|+||+|  .+|..+|..|++.|.  +|++.|+++ ....+.++............ ...+          ..+.
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEEC-CTTCHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeec-ccchHHHHHHHHHHhhhc
Confidence            446899999976  588999999999998  999999987 44444443332211111111 1112          1233


Q ss_pred             cCCCcEEEEcCCCCCCCCCC-------hh----hhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHH
Q 020049           86 LTGMDLVIIPAGVPRKPGMT-------RD----DLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK  153 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~~~g~~-------r~----~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~  153 (332)
                      +...|++|..++........       ..    ....-|......+.+.+..+- +...|+++|......          
T Consensus        81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~----------  150 (258)
T d1qsga_          81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER----------  150 (258)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS----------
T ss_pred             ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhcc----------
Confidence            45678888887654222111       11    122344555555555555544 344555555432111          


Q ss_pred             hCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       154 ~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                        +.|..-.++.+.-....+.+.+|..++  ++.|++-.+-
T Consensus       151 --~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         151 --AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             --BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             --CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence              123222344443334567888999887  6677666554

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.67  E-value=0.00037  Score=59.25  Aligned_cols=159  Identities=13%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCC-C-eEEEEeCCCCHHhhcC--CCcEEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTG-A-VVRGFLGQPQLENALT--GMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~-~-~v~~~~~~~d~~~a~~--~aDiVi~   94 (332)
                      .++|.|+||+|.+|..++..|++.|.  +|+++|.++.. .......+.... . .....  .....+.+.  .-|++|.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iD~lIn   77 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEASASVIVKMTDSFTEQADQV--TAEVGKLLGDQKVDAILC   77 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSSEEEECCCCSCHHHHHHHH--HHHHHHHHTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccccccceeecccCcHHHHHHH--HHHHHHHhCCCCceEEEE
Confidence            36899999999999999999999998  99999987621 000000000000 0 00000  001112222  4799999


Q ss_pred             cCCCCC--CC-CCC----hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEee
Q 020049           95 PAGVPR--KP-GMT----RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (332)
Q Consensus        95 ~~g~~~--~~-g~~----r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~  166 (332)
                      .||...  .+ ...    ....+..|+......++.+.++- +.+.||+++.-...            .+.|..-.++.+
T Consensus        78 nAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~------------~~~~~~~~Y~as  145 (236)
T d1dhra_          78 VAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL------------DGTPGMIGYGMA  145 (236)
T ss_dssp             CCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHH
T ss_pred             CCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc------------CCccCCcccHHH
Confidence            988422  11 112    12234556665555555555544 35677776542211            122222223333


Q ss_pred             hhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          167 MLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       167 ~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      .-.-..|.+.+|..++-.+..|++..+.
T Consensus       146 Kaal~~lt~~la~El~~~~~gI~vn~v~  173 (236)
T d1dhra_         146 KGAVHQLCQSLAGKNSGMPSGAAAIAVL  173 (236)
T ss_dssp             HHHHHHHHHHHTSTTSSCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHhccCCCcEEEEEEE
Confidence            3233445566666655335667665554

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.66  E-value=0.00035  Score=59.34  Aligned_cols=158  Identities=14%  Similarity=0.045  Sum_probs=80.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH-HHHHHHhcCCCCCeEEEEe-CCCCHHhh--cCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFL-GQPQLENA--LTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~-~~~d~~~a--~~~aDiVi~~~   96 (332)
                      -||.|+||+|.+|..++..|++.|+  +|+++|+++.. ........... ....... ........  ...-|++|..|
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~iD~linnA   79 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQADSNILVDGNK-NWTEQEQSILEQTASSLQGSQVDGVFCVA   79 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSSEEEECCTTS-CHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCchhcccccceecccc-CchhHHHHHHHHHHHHhcCCCeeEEEECC
Confidence            3899999999999999999999998  99999997611 00000000000 0000000 00001121  24469999999


Q ss_pred             CCCCC--C-CCCh----hhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehh
Q 020049           97 GVPRK--P-GMTR----DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (332)
Q Consensus        97 g~~~~--~-g~~r----~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~l  168 (332)
                      |....  + ..+.    ...+..|+.....+++...++- +.+.|++++.....            .+.|..-.++.+.-
T Consensus        80 G~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~------------~~~~~~~~Y~asKa  147 (235)
T d1ooea_          80 GGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM------------GPTPSMIGYGMAKA  147 (235)
T ss_dssp             CCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG------------SCCTTBHHHHHHHH
T ss_pred             cccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhc------------CCcccccchHHHHH
Confidence            85321  1 1221    2234556655555555554443 35677776532211            12222222333333


Q ss_pred             hHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          169 DVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       169 d~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      ....|.+.+|..++-.+..|++..+
T Consensus       148 al~~l~~~la~e~~~~~~~i~v~~i  172 (235)
T d1ooea_         148 AVHHLTSSLAAKDSGLPDNSAVLTI  172 (235)
T ss_dssp             HHHHHHHHHHSTTSSCCTTCEEEEE
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEE
Confidence            3345666777666544455655444

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.66  E-value=0.0019  Score=51.52  Aligned_cols=73  Identities=16%  Similarity=0.248  Sum_probs=51.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHH--HHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      ..+..||.|||+ |.+|..++..|...+. .++.++.+...++  .+..+.     .....   -.++.+++.++|+||.
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~-----~~~~~---~~~~~~~l~~~Divi~   90 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG-----GEAVR---FDELVDHLARSDVVVS   90 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT-----CEECC---GGGHHHHHHTCSEEEE
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhh-----ccccc---chhHHHHhccCCEEEE
Confidence            345679999999 9999999999988775 3799998764222  222221     12221   2467889999999999


Q ss_pred             cCCCC
Q 020049           95 PAGVP   99 (332)
Q Consensus        95 ~~g~~   99 (332)
                      +.+.+
T Consensus        91 atss~   95 (159)
T d1gpja2          91 ATAAP   95 (159)
T ss_dssp             CCSSS
T ss_pred             ecCCC
Confidence            86644

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.65  E-value=0.011  Score=50.00  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=87.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hh
Q 020049           23 VAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------EN   84 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~   84 (332)
                      |.|+||++.+|..+|..|+..|.     ...|+++|+++  ++....++....  .+...+. +-+|.          .+
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            56889999999999999998875     13489999886  344455565432  2333222 12232          23


Q ss_pred             hcCCCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHh
Q 020049           85 ALTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (332)
Q Consensus        85 a~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~  154 (332)
                      .+..-|++|..||......   .+.   ...+..|+    ...+.+.+.|++. ..+.||+++.-....           
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~-----------  149 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAATK-----------  149 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGTS-----------
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechhhcC-----------
Confidence            3467999999998754322   121   22334444    5556666666654 356677775433221           


Q ss_pred             CCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       155 ~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                       ++|..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       150 -~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i  185 (240)
T d2bd0a1         150 -AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDV  185 (240)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             -CCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEe
Confidence             223222333333233456677777775  556655444

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.00055  Score=55.75  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=44.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHH-HHHh-cCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADIS-HMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-~dl~-~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++||+|+||+|++|.-+...|...+.+ +|..+=.+...|.. .+.. +......+.    ..+.++..+++|+|+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~----~~~~~~~~~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILS----EFDPEKVSKNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCB----CCCHHHHHHHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccccc----ccCHhHhccccceEEEcc
Confidence            479999999999999999999887754 66665333322221 1121 111111222    234456667999999985

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.65  E-value=0.0016  Score=55.43  Aligned_cols=151  Identities=19%  Similarity=0.144  Sum_probs=82.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCC---H-------HhhcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQ---L-------ENALT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d---~-------~~a~~   87 (332)
                      .+++.|+||++.+|..+|..|+..|.  +|++.|+++.  +..+.++.   . ..+. . +-+|   .       .+.+.
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~---~-~~~~-~-Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVG---A-HPVV-M-DVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTT---C-EEEE-C-CTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcC---C-eEEE-E-ecCCHHHHHHHHHHHHHhcC
Confidence            35789999999999999999999998  9999999862  22222221   1 0111 0 1112   1       23345


Q ss_pred             CCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHH----HHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~----~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||......   .+   ....+.-|+....    .+.+.+.+. ..+.+++.+. ...            .+.
T Consensus        77 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~~~i~~~ss-~~~------------~~~  142 (242)
T d1ulsa_          77 RLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREK-NPGSIVLTAS-RVY------------LGN  142 (242)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CCEEEEEECC-GGG------------GCC
T ss_pred             CceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccc-ccceeeeecc-ccc------------cCC
Confidence            7899999998754321   22   2233445554444    444444433 3444554433 110            123


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      |..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       143 ~~~~~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~  177 (242)
T d1ulsa_         143 LGQANYAASMAGVVGLTRTLALELG--RWGIRVNTLA  177 (242)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHh--hhCcEEEEEe
Confidence            3333344443333456777887775  5556555443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.65  E-value=0.012  Score=49.78  Aligned_cols=152  Identities=16%  Similarity=0.114  Sum_probs=90.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeC-CCC----------HHhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ----------LENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d----------~~~a~~   87 (332)
                      +++.|+||++.+|..+|..|+..|.  +|++.|+++.  .....++   .  .++..+.. -++          ..+.+.
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dls~~~~i~~~~~~i~~~~g   78 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAAL---E--AEAIAVVADVSDPKAVEAVFAEALEEFG   78 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTC---C--SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc---C--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999998  9999998862  2222222   1  22222111 112          123346


Q ss_pred             CCcEEEEcCCCCCCC---CCC---hhhhHhhhHHHHHHHHHHHHhhCC-CcEEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 020049           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~---g~~---r~~~~~~n~~~~~~i~~~i~~~~p-~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                      .-|++|..+|.....   ..+   ....+.-|+.....+.+...++.. ...+++.|.......+-             .
T Consensus        79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~-------------~  145 (241)
T d2a4ka1          79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG-------------L  145 (241)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH-------------H
T ss_pred             CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC-------------c
Confidence            799999988764322   122   234456777777777777776664 34455555443222110             1


Q ss_pred             ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       161 kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      -.++.+.-....+.+.+|+.++  +..|++-.+-
T Consensus       146 ~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~  177 (241)
T d2a4ka1         146 AHYAAGKLGVVGLARTLALELA--RKGVRVNVLL  177 (241)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEEE
T ss_pred             cccchhhHHHHHHHHHHHHHHh--HhCCEEeeec
Confidence            1234443344567889999987  5566655554

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.61  E-value=0.016  Score=49.12  Aligned_cols=153  Identities=8%  Similarity=0.026  Sum_probs=85.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCH-------HhhcCCCcEEE
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL-------ENALTGMDLVI   93 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-------~~a~~~aDiVi   93 (332)
                      ...|+||++.+|..+|..|++.|.  +|++.|++. .......+.......++..   ..+.       .+.+-.-|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEE
Confidence            467999999999999999999998  999999876 2222222221111122221   2222       24456889999


Q ss_pred             EcCCCCCCCC----CChhh---hHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCce
Q 020049           94 IPAGVPRKPG----MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (332)
Q Consensus        94 ~~~g~~~~~g----~~r~~---~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kv  162 (332)
                      ..+|.....+    .+..+   .+..|    ....+.+.+.|.+.. .+.||++|.-....            +.|..-.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~------------~~~~~~~  143 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFG------------PWKELST  143 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTS------------CCTTCHH
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeeccccccccc------------ccccccc
Confidence            9887542221    22222   22233    455667777777654 45666665433221            1221122


Q ss_pred             EEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       163 iG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      ++.+.-....|.+.+|..++  +..|++-.+-
T Consensus       144 Y~asKaal~~lt~~lA~ela--~~gIrVN~I~  173 (252)
T d1zmta1         144 YTSARAGACTLANALSKELG--EYNIPVFAIG  173 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCCEEEEE
T ss_pred             cccccccHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            33333233456777887776  5556555444

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.59  E-value=0.013  Score=49.97  Aligned_cols=111  Identities=12%  Similarity=0.130  Sum_probs=67.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCC----------HHhhcCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ----------LENALTG   88 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d----------~~~a~~~   88 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  ++..+.++....    +.....-+|          ..+.+..
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERS----MFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTE----EEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCe----EEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4688889999999999999999998  999999986  333444443221    110001111          1234567


Q ss_pred             CcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           89 MDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        89 aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      -|++|..+|......   .+.   ...+.-|+    ...+...+.|++  ..+.||+++..
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~--~~G~Iv~isS~  139 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKE--TGGSIINMASV  139 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--TCEEEEEECCG
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCCceecccch
Confidence            899999998754321   222   22334443    445566666653  24777777643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.56  E-value=0.00045  Score=58.95  Aligned_cols=154  Identities=16%  Similarity=0.212  Sum_probs=83.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HH---HHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~---~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      +.+++.|+||++.+|..+|..|++.|.  +|++.|+++.  +.   ...|+.+..   .++...  ....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~~--~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRAF--TAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHHH--HHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHHH--HHHHHhcCCceEEE
Confidence            446899999999999999999999998  9999999761  10   001111100   000000  01234456899999


Q ss_pred             EcCCCCCCC---CCCh---hhhHhhhHH----HHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceE
Q 020049           94 IPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (332)
Q Consensus        94 ~~~g~~~~~---g~~r---~~~~~~n~~----~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kvi  163 (332)
                      ..||.....   ..+.   ...+.-|+.    ..+.+.+.+.+. ..+.||+++.-.....            .|..-.+
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~Iv~isS~~~~~~------------~~~~~~Y  145 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSGLWG------------IGNQANY  145 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC-----------------CCHHH
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccc-CCCceEEEcchhhccC------------CcccHHH
Confidence            999864321   1222   223444544    345556666544 4566777765443221            1111223


Q ss_pred             EeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          164 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       164 G~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      +.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       146 ~asKaal~~lt~~lA~e~~--~~gIrVN~I~  174 (237)
T d1uzma1         146 AASKAGVIGMARSIARELS--KANVTANVVA  174 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhh--cCCceeeeee
Confidence            3332233456677787775  5556554443

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.55  E-value=0.032  Score=47.35  Aligned_cols=115  Identities=17%  Similarity=0.147  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeC--CCCH----------Hhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG--QPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~--~~d~----------~~a~   86 (332)
                      .+.|.|+||++.+|..+|..|+..|.  .+++++.+. ....+.++........+..+..  +.+.          .+.+
T Consensus         5 gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           5 NKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  666665443 2222222322211223332211  1121          1224


Q ss_pred             CCCcEEEEcCCCCCCCCCChhhhHhhhH----HHHHHHHHHHHhh--CCCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKC--CPNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g~~r~~~~~~n~----~~~~~i~~~i~~~--~p~a~viv~tN  138 (332)
                      ...|++|..||....  .+....+..|+    ...+.+.+.|.+.  .+.+.||+++.
T Consensus        83 g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS  138 (254)
T d1sbya1          83 KTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             SCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence            689999999986532  23334444554    4566667777543  35677777753

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.0049  Score=48.54  Aligned_cols=61  Identities=15%  Similarity=0.087  Sum_probs=38.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ||++||. |.||+.+|..|+..++  .++..|. ..+.  .++..... . ..     .. .+.+.++|++|.+.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~~~~~-~~~~--~~~~~~~~-~-~~-----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLVWNRT-FEKA--LRHQEEFG-S-EA-----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEEECSS-THHH--HHHHHHHC-C-EE-----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEEEeCC-HHHH--HHHHHHcC-C-cc-----cc-cccccceeEEEecc
Confidence            7999999 9999999999998776  6654443 3221  11211111 1 11     12 35677899999873

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.018  Score=44.76  Aligned_cols=102  Identities=9%  Similarity=-0.037  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi   93 (332)
                      ..+|.|+|. |.+|..++..|...+.  +++++|.++.  .....++....  ..+.. ...+|.    ...+..||.||
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~--~~vi~-Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN--ADVIP-GDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT--CEEEE-SCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCC--cEEEE-ccCcchHHHHHhccccCCEEE
Confidence            347999999 9999999999999887  8999998862  23334343322  22221 112231    23467899999


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe-cCCCCc
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS  142 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~-tNP~~~  142 (332)
                      ++.+.         |  ..|+.+    +..+++.+|+..++.- .+|-+.
T Consensus        77 ~~~~~---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~  111 (153)
T d1id1a_          77 ALSDN---------D--ADNAFV----VLSAKDMSSDVKTVLAVSDSKNL  111 (153)
T ss_dssp             ECSSC---------H--HHHHHH----HHHHHHHTSSSCEEEECSSGGGH
T ss_pred             Ecccc---------H--HHHHHH----HHHHHHhCCCCceEEEEcCHHHH
Confidence            98421         1  344433    3455677888755555 455443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.51  E-value=0.0021  Score=52.81  Aligned_cols=98  Identities=18%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC-C
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-V   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g-~   98 (332)
                      .++|+|||. |.+|+.++..+..-|.  ++..+|............ ..     ..   ..++++.++.||+|++... .
T Consensus        47 g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-~~-----~~---~~~l~~ll~~sD~v~l~~plt  114 (191)
T d1gdha1          47 NKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY-QA-----TF---HDSLDSLLSVSQFFSLNAPST  114 (191)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH-TC-----EE---CSSHHHHHHHCSEEEECCCCC
T ss_pred             ccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcc-cc-----cc---cCCHHHHHhhCCeEEecCCCC
Confidence            478999999 9999999998886666  999999865211111111 11     11   2367899999999999743 2


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      +...++-       |.       +.+...-|++++||++  .-+|--
T Consensus       115 ~~T~~li-------~~-------~~l~~mk~~a~lIN~sRG~ivde~  147 (191)
T d1gdha1         115 PETRYFF-------NK-------ATIKSLPQGAIVVNTARGDLVDNE  147 (191)
T ss_dssp             TTTTTCB-------SH-------HHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             chHhhee-------cH-------HHhhCcCCccEEEecCCccchhhH
Confidence            2222221       11       1222334788999986  444443

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.50  E-value=0.015  Score=49.21  Aligned_cols=154  Identities=18%  Similarity=0.182  Sum_probs=88.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH----------HhhcC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (332)
                      =|.|+||++.+|..+|..|+..|.  +|++.|.+.   .+.....+....  .++..+. +-+|.          .+.+.
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWG   78 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            367889999999999999999998  899987765   223333333221  2332221 11232          22346


Q ss_pred             CCcEEEEcCCCCCCCC---CCh---hhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCC
Q 020049           88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g---~~r---~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~  157 (332)
                      .-|++|..||......   .+.   ...+.-|    ....+.+++.|.+. ..+.||++|.-...          .  +.
T Consensus        79 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~~----------~--~~  145 (244)
T d1edoa_          79 TIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVGL----------I--GN  145 (244)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHHH----------H--CC
T ss_pred             CCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhhc----------C--CC
Confidence            7899999998654322   121   2233344    44556666666654 46777777652211          1  23


Q ss_pred             CCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       158 ~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      |..-.++.+.-.-..|.+.+|..++  +..|++-.+-
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I~  180 (244)
T d1edoa_         146 IGQANYAAAKAGVIGFSKTAAREGA--SRNINVNVVC  180 (244)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEEe
Confidence            3333444444344567788888876  5566555543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.016  Score=45.92  Aligned_cols=98  Identities=16%  Similarity=0.170  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--------CCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL--------TGM   89 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--------~~a   89 (332)
                      +..+|+|+|+ |.+|...+..+...|. ..|+.+|.++ ....+.++.   . ..+... ...+..+..        .++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a-~~~~~~-~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---A-DLVLQI-SKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---C-SEEEEC-SSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---C-cccccc-cccccccccccccccCCCCc
Confidence            3458999998 9999999988888775 3799999987 233333331   1 122222 223433322        379


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      |+||.+.|.+               ..+....+.   ..|.+.+++++.|.+
T Consensus        99 Dvvid~~G~~---------------~~~~~a~~~---~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          99 EVTIECTGAE---------------ASIQAGIYA---TRSGGTLVLVGLGSE  132 (171)
T ss_dssp             SEEEECSCCH---------------HHHHHHHHH---SCTTCEEEECSCCCS
T ss_pred             eEEEeccCCc---------------hhHHHHHHH---hcCCCEEEEEecCCC
Confidence            9999997633               112222222   237888888865543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.47  E-value=0.0079  Score=49.31  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||. |.+|+.+|..+..-|.  +|..+|............       +..   ..++++.++.||+|++....
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~~~~pl  114 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCGL  114 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCCC
T ss_pred             eCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEEEeecc
Confidence            3468999999 9999999999986666  999999865222211111       111   24688999999999998532


Q ss_pred             -CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 -~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                       +...++-       |.+       .+....|++++||++  .-+|.-
T Consensus       115 t~~T~~li-------~~~-------~l~~mk~~a~lIN~sRG~ivde~  148 (193)
T d1mx3a1         115 NEHNHHLI-------NDF-------TVKQMRQGAFLVNTARGGLVDEK  148 (193)
T ss_dssp             CTTCTTSB-------SHH-------HHTTSCTTEEEEECSCTTSBCHH
T ss_pred             cccchhhh-------hHH-------HHhccCCCCeEEecCCceEEcHH
Confidence             2222221       111       133334789999996  334443

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.43  E-value=0.0073  Score=51.38  Aligned_cols=158  Identities=14%  Similarity=0.198  Sum_probs=86.6

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCH----------Hhhc
Q 020049           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL----------ENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~   86 (332)
                      .+++.|+||+|  .+|..+|..|+..|.  +|++.|+++ ....+.++........... ..-+|.          .+.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFR-ADVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEE-CCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccc-cccCCHHHHHHHHHHHHHhc
Confidence            35799999976  599999999999998  899999887 3333333332221111111 111221          2334


Q ss_pred             CCCcEEEEcCCCCCCC-------CCChhh---hHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhC
Q 020049           87 TGMDLVIIPAGVPRKP-------GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~-------g~~r~~---~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~  155 (332)
                      ..-|++|..+|.....       ..+..+   .+.-|+.....+++....+- ..+.||+++.....            .
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~------------~  152 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE------------K  152 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT------------S
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc------------C
Confidence            5789999998864211       122222   23455555555665554433 24667766532211            1


Q ss_pred             CCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       156 ~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                      +.|..-.++.+.-.-..+.+.+|..++  +..|++-.+-
T Consensus       153 ~~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I~  189 (256)
T d1ulua_         153 VVPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAIS  189 (256)
T ss_dssp             BCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeeec
Confidence            223222334433233456778888876  5566554443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.40  E-value=0.0042  Score=53.02  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=31.8

Q ss_pred             CCCCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           18 AAGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        18 ~~~~kI~IiGa~G~--vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+.+++.|+||+|.  +|.++|..|+..|.  +|+|.+.++
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            34568999997664  99999999999998  999999886

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.37  E-value=0.0051  Score=49.70  Aligned_cols=73  Identities=18%  Similarity=0.283  Sum_probs=43.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc---CCcHHHHHHHhc--C--CCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV---VNTPGVTADISH--M--DTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~---~~~~~~~~dl~~--~--~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ++||+|+||+|++|.-+...|...+.+ +|.-+-.   ....|....-.+  .  .........   .+......++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            579999999999999999999988654 5544322   111121111111  1  112223322   2334557899999


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      +.+.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9984

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.35  E-value=0.0023  Score=52.17  Aligned_cols=88  Identities=23%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|||. |.+|..++..+..-|.  +|..+|....+        ..  .  ..   ..++++.+++||+|++..  
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~--------~~--~--~~---~~~l~ell~~sDiv~~~~--  100 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKE--------GP--W--RF---TNSLEEALREARAAVCAL--  100 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCC--------SS--S--CC---BSCSHHHHTTCSEEEECC--
T ss_pred             cCceEEEecc-ccccccceeeeecccc--ccccccccccc--------cc--e--ee---eechhhhhhccchhhccc--
Confidence            3468999999 9999999999987777  99999986421        10  0  11   135689999999999974  


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                      |..+. ++ .++  |.       +.+....|++++|+++
T Consensus       101 pl~~~-t~-~li--~~-------~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         101 PLNKH-TR-GLV--KY-------QHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CCSTT-TT-TCB--CH-------HHHTTSCTTCEEEECS
T ss_pred             ccccc-cc-ccc--cc-------ceeeeccccceEEecc
Confidence            32221 11 111  11       2333345789999986

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.34  E-value=0.004  Score=51.38  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=46.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      .++|+|||. |.+|+.+|..+..-|.  +|..+|.........   . ..    .    ..++++.++.||+|++..
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~----~----~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GY----Y----VDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TC----B----CSCHHHHHHHCSEEEECS
T ss_pred             CCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-ee----e----eccccccccccccccccC
Confidence            468999999 9999999999986666  999999765221111   1 11    1    235789999999999985

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.28  E-value=0.024  Score=44.71  Aligned_cols=101  Identities=14%  Similarity=0.047  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHH---hhc-----C
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE---NAL-----T   87 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~---~a~-----~   87 (332)
                      -.+..+|+|+|+ |.+|...++.+...|.  +|+.+|.++ ....+.++..   ...+.......+..   +.+     .
T Consensus        24 ~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          24 VQLGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhccccc
Confidence            334468999998 9999999988888886  899999986 3333443321   11111111112211   111     5


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      ++|+||.++|.+               ..+...   ++-..|.+.+++++.|..
T Consensus        98 g~D~vid~~g~~---------------~~~~~a---~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          98 LPNVTIDCSGNE---------------KCITIG---INITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             CCSEEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCSS
T ss_pred             CCceeeecCCCh---------------HHHHHH---HHHHhcCCceEEEecCCC
Confidence            699999997633               112222   232348898888876543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.25  E-value=0.0037  Score=50.98  Aligned_cols=96  Identities=23%  Similarity=0.350  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC-
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG-   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g-   97 (332)
                      ..++|+|+|. |.+|+.++..+..-+.  +|+.+|.........+..       +..    .++++.++.||+|++... 
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv~~~~Pl  108 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLPK  108 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCCC
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEEEEcCCC
Confidence            3468999999 9999999998876555  999999865333322221       121    257899999999999742 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCc
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  142 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~  142 (332)
                      .+...++-       |.       +.+....|++++||++  .=+|-
T Consensus       109 t~~T~~li-------n~-------~~l~~mk~~a~lIN~sRG~iVde  141 (184)
T d1ygya1         109 TPETAGLI-------DK-------EALAKTKPGVIIVNAARGGLVDE  141 (184)
T ss_dssp             STTTTTCB-------CH-------HHHTTSCTTEEEEECSCTTSBCH
T ss_pred             Cchhhhhh-------hH-------HHHhhhCCCceEEEecchhhhhh
Confidence            22222221       11       2223334789999996  44443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.17  E-value=0.015  Score=51.82  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=53.2

Q ss_pred             hhhccCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC
Q 020049           11 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        11 ~~~~~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~   88 (332)
                      .+.+++.   ..++|||+ |..+...+..+...-.+.+|.++|++.  ....+.++.... ...+..   ..++++++++
T Consensus       122 ~LA~~da---~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v~~---~~s~~eav~~  193 (340)
T d1x7da_         122 ALARPNA---RKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYS-GLTIRR---ASSVAEAVKG  193 (340)
T ss_dssp             HHSCTTC---CEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCT-TCEEEE---CSSHHHHHTT
T ss_pred             HhhccCC---ceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhcc-CCCcee---cCCHHHHHhc
Confidence            3444543   57999999 998887776665433367999999986  334455565322 234443   3578999999


Q ss_pred             CcEEEEcC
Q 020049           89 MDLVIIPA   96 (332)
Q Consensus        89 aDiVi~~~   96 (332)
                      ||+|+.+-
T Consensus       194 ADIi~t~T  201 (340)
T d1x7da_         194 VDIITTVT  201 (340)
T ss_dssp             CSEEEECC
T ss_pred             CCceeecc
Confidence            99999753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.14  E-value=0.0028  Score=54.65  Aligned_cols=39  Identities=21%  Similarity=0.228  Sum_probs=34.1

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +...+|+||+|||| |..|.+.|..|.+.|+  +|+++|.++
T Consensus        25 ~~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          25 KATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CCCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            34456789999999 9999999999999998  999999764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.04  E-value=0.029  Score=47.62  Aligned_cols=156  Identities=18%  Similarity=0.150  Sum_probs=83.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEe-CCCCH----------Hhhc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL----------ENAL   86 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~   86 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.+.+.   .+.....+.+..  .++..+. +-+|.          .+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999  888865544   233334444432  2222221 11231          1234


Q ss_pred             CCCcEEEEcCCCCCCCC---CC---hhhhHhhhHHHHHHHHHHHHhhC-CCcEEEEecCCCCchHHHHHHHHHHhCCCCC
Q 020049           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---~~---r~~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~  159 (332)
                      ..-|++|..+|......   .+   ....+..|+.....+.+.+.++. .++.+++++......           .++|.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~-----------~~~~~  151 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVM-----------TGIPN  151 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTC-----------CSCCS
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccc-----------cCCCC
Confidence            57899999998643221   12   22334455554444444444443 234444443222111           12332


Q ss_pred             CceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       160 ~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .-.++.+.-....+.+.+|..++  +..|++-.+
T Consensus       152 ~~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I  183 (259)
T d1ja9a_         152 HALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCI  183 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             chhHHHHHHHHHHHHHHHHHHHh--hcCeEEecc
Confidence            22233333333457788888887  455644444

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.03  E-value=0.047  Score=43.42  Aligned_cols=70  Identities=20%  Similarity=0.212  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.++|.|+|+ |.++.++++.|.+.+  .+|++++++.  ++..+.++...   ..+....  .+ ...+.++|+||.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~~~~~~diiIN~t   87 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SIPLQTYDLVINAT   87 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GCCCSCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cccccccceeeecc
Confidence            4568999999 999999999888755  4999999876  33344444432   2333321  12 23478999999985


Q ss_pred             C
Q 020049           97 G   97 (332)
Q Consensus        97 g   97 (332)
                      .
T Consensus        88 p   88 (171)
T d1p77a1          88 S   88 (171)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.02  E-value=0.0034  Score=52.39  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +||+|||| |..|.+.|..|.+.|+  +|.++|.+.
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            58999999 9999999999999998  999999754

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.091  Score=43.83  Aligned_cols=155  Identities=14%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCC----------HHhhc
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ----------LENAL   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d----------~~~a~   86 (332)
                      |.+.+.|+||++.+|..+|..|++.|.  +|++.|+++  ++....++....  .....  ...+          .....
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~   77 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGNNC--VFAPA--DVTSEKDVQTALALAKGKF   77 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCTTE--EEEEC--CTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCc--ccccc--ccccccccccccccccccc
Confidence            445678999999999999999999998  999999987  344444443221  11110  0111          12334


Q ss_pred             CCCcEEEEcCCCCCCCC---------CC---hhhhHhhhHHHH----HHHHHHHHhhC-----CCcEEEEecCCCCchHH
Q 020049           87 TGMDLVIIPAGVPRKPG---------MT---RDDLFNINAGIV----RTLCEGIAKCC-----PNATVNLISNPVNSTVP  145 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g---------~~---r~~~~~~n~~~~----~~i~~~i~~~~-----p~a~viv~tNP~~~~t~  145 (332)
                      ...|+.+..++.....+         .+   ....+..|+...    +.+.+.+.+..     ..+.||++|.....   
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~---  154 (248)
T d2o23a1          78 GRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF---  154 (248)
T ss_dssp             SCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH---
T ss_pred             ccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhc---
Confidence            56788888765422111         11   122334454444    44444443322     34567777653311   


Q ss_pred             HHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          146 IAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       146 ~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                              . +.|..=.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       155 --------~-~~~~~~~Y~asKaal~~lt~~la~e~~--~~gIrvN~I  191 (248)
T d2o23a1         155 --------E-GQVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTI  191 (248)
T ss_dssp             --------H-CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             --------c-CCCCchHHHHHHHHHHHHHHHHHHHhc--ccCcceeee
Confidence                    1 223222344433333457788888876  555654444

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.94  E-value=0.02  Score=45.20  Aligned_cols=100  Identities=16%  Similarity=0.250  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      -.+..+|+|+|+ |.+|...++.+...|.  +++.+|.++ ....+.++.-    ..+.............+++|+||.+
T Consensus        28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC----cEEEECchhhHHHHhcCCCceeeee
Confidence            344468999998 9999999988888887  677788766 3334444431    1111111111122334689999999


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      .|.+..                  +-..+.-..|.+.+++++.|.+
T Consensus       101 ~g~~~~------------------~~~~~~~l~~~G~iv~~G~~~~  128 (168)
T d1uufa2         101 VAAPHN------------------LDDFTTLLKRDGTMTLVGAPAT  128 (168)
T ss_dssp             CSSCCC------------------HHHHHTTEEEEEEEEECCCC--
T ss_pred             eecchh------------------HHHHHHHHhcCCEEEEeccCCC
Confidence            764420                  1122233457888888865544

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.91  E-value=0.0072  Score=47.96  Aligned_cols=66  Identities=23%  Similarity=0.281  Sum_probs=40.8

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcC-CCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVi~~   95 (332)
                      .+||+|||+ |.+|.. ..+.+...+. .+++++|.++.  ...+.++..    +  ..   .+|+++.++ +.|+|+++
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~----~--~~---~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV----S--AT---CTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC----C--CC---CSSTTGGGGGCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc----c--cc---cccHHHhcccccceeccc
Confidence            379999999 999976 5666655543 38889998762  222222211    1  11   235555553 78999987


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.90  E-value=0.038  Score=39.73  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=53.3

Q ss_pred             cCCCCCCeEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEE
Q 020049           15 KGGAAGFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (332)
Q Consensus        15 ~~~~~~~kI~IiGa~G~vG-~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi   93 (332)
                      |+-.+.+||-+||- |-+| +++|..|...|+  +|.-.|.... ....+|.+..  ..+..  +. + ++.++++|+||
T Consensus         3 ~~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G--i~v~~--g~-~-~~~i~~~d~vV   72 (96)
T d1p3da1           3 PEMRRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG--AKIYI--GH-A-EEHIEGASVVV   72 (96)
T ss_dssp             CCCTTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT--CEEEE--SC-C-GGGGTTCSEEE
T ss_pred             ccchhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC--CeEEE--CC-c-cccCCCCCEEE
Confidence            34456689999999 6677 778999999999  9999998752 2233455432  33332  22 3 45689999999


Q ss_pred             EcCCCC
Q 020049           94 IPAGVP   99 (332)
Q Consensus        94 ~~~g~~   99 (332)
                      .+.+.|
T Consensus        73 ~S~AI~   78 (96)
T d1p3da1          73 VSSAIK   78 (96)
T ss_dssp             ECTTSC
T ss_pred             ECCCcC
Confidence            998777

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.89  E-value=0.035  Score=48.43  Aligned_cols=155  Identities=13%  Similarity=0.166  Sum_probs=86.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----------cHHHHHHHhcCCCCCeEEEEeCCCCH-------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----------TPGVTADISHMDTGAVVRGFLGQPQL-------   82 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----------~~~~~~dl~~~~~~~~v~~~~~~~d~-------   82 (332)
                      +.+.|+||++.+|..+|..|+..|.  .|++.|++.           ++..+.++..... ..........+.       
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG-KAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC-EEEEECCCGGGHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc-ccccccchHHHHHHHHHHH
Confidence            4688889999999999999999998  999999753           1122233333221 111111111121       


Q ss_pred             HhhcCCCcEEEEcCCCCCCCC---CCh---hhhHhhhH----HHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           83 ENALTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        83 ~~a~~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~----~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                      .+.+..-|++|..||......   .+.   ...+.-|+    ...+.+.+.|++.. .+.||+++....          .
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~----------~  153 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASG----------I  153 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH----------H
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhh----------c
Confidence            134567999999999754321   222   22334454    45566666666553 567777764221          0


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .  +.|..-.++.+.-.-..|.+.+|..++  +..|++-.+
T Consensus       154 ~--~~~~~~~Y~asKaal~~lt~~la~E~~--~~gIrVN~I  190 (302)
T d1gz6a_         154 Y--GNFGQANYSAAKLGLLGLANTLVIEGR--KNNIHCNTI  190 (302)
T ss_dssp             H--CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             C--CCCCcHHHHHHHHHHHHHHHHHHHHHh--ccCCceeee
Confidence            1  223222344443334456777777765  455654444

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.87  E-value=0.068  Score=45.72  Aligned_cols=150  Identities=21%  Similarity=0.195  Sum_probs=83.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEe-CCCC----------HHhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~~   87 (332)
                      +.+.|+||++.+|..+|..|+..|.  +|++.|+++  +.....++..     ++..+. .-++          ..+.+.
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHHhC
Confidence            5799999999999999999999998  999999986  2233333322     111111 1112          123456


Q ss_pred             CCcEEEEcCCCCCCCC-------CC----hhhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           88 GMDLVIIPAGVPRKPG-------MT----RDDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g-------~~----r~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                      ..|++|..||......       +.    ....+.-|    ....+.+.+.|.+.. ..+|++.|. ....         
T Consensus        79 ~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~-~~~~---------  147 (276)
T d1bdba_          79 KIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISN-AGFY---------  147 (276)
T ss_dssp             CCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCG-GGTS---------
T ss_pred             CcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeec-hhcc---------
Confidence            8899999998643221       11    11223334    345566666666542 344444332 2111         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~G  194 (332)
                         +.|..-.++.+.-.-..|.+.+|..++  +. |++-.+-
T Consensus       148 ---~~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrVN~I~  183 (276)
T d1bdba_         148 ---PNGGGPLYTAAKHAIVGLVRELAFELA--PY-VRVNGVG  183 (276)
T ss_dssp             ---TTSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             ---CCCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEEcccC
Confidence               112112233332233456778888886  33 6555444

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.78  E-value=0.0045  Score=52.08  Aligned_cols=34  Identities=15%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.||+|||| |..|.++|..|++.|+  +++++|.+.
T Consensus         4 ~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            469999999 9999999999999998  999999753

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.73  E-value=0.013  Score=46.73  Aligned_cols=66  Identities=20%  Similarity=0.374  Sum_probs=44.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |+++||+|+|. |.+|+.++..+...+-..-+.++|.+...         ........   ..+..+...+.|+|+++.
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~---~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFD---VADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEE---GGGGGGTTTTCSEEEECS
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------cccccccc---chhhhhhccccceEEEeC
Confidence            45689999998 99999999888876543334567765411         11122332   235567789999999985

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0035  Score=50.04  Aligned_cols=73  Identities=21%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCC--CCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ++||+|+||+|.||+.++..+.+.+-..=+..+|.......-.|+.....  ...+..   +.++++.++.+|+||=.
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            57999999999999999998877643211245565431111112221111  122222   23556788999988764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.047  Score=44.14  Aligned_cols=95  Identities=24%  Similarity=0.328  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      ..++|+|+|. |.+|..++..+..-+.  +|..+|....         ........    ..++++.++.||+|++....
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~---------~~~~~~~~----~~~l~ell~~sDii~i~~pl  106 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENK---------LPLGNATQ----VQHLSDLLNMSDVVSLHVPE  106 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCC---------CCCTTCEE----CSCHHHHHHHCSEEEECCCS
T ss_pred             cceEEEEeec-ccchhhhhhhcccccc--eEeecccccc---------chhhhhhh----hhhHHHHHhhccceeecccC
Confidence            3469999999 9999999998877676  9999997641         00001111    23678999999999998543


Q ss_pred             C-CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec--CCCCch
Q 020049           99 P-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST  143 (332)
Q Consensus        99 ~-~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t--NP~~~~  143 (332)
                      . ...++-       |.       +.+....+++++||++  .=+|.-
T Consensus       107 t~~T~~li-------~~-------~~l~~mk~~a~lIN~aRG~lvde~  140 (188)
T d1sc6a1         107 NPSTKNMM-------GA-------KEISLMKPGSLLINASRGTVVDIP  140 (188)
T ss_dssp             STTTTTCB-------CH-------HHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             Ccchhhhc-------cH-------HHHhhCCCCCEEEEcCcHHhhhhH
Confidence            2 222221       11       1233345789999996  444443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.0011  Score=51.98  Aligned_cols=62  Identities=10%  Similarity=0.071  Sum_probs=34.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      |.+||+ |+||++++..|...+.  ...+++++.  ..+.++.+... .  . .  . +..++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~-~--~-~--~-~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYG-G--K-A--A-TLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTC-C--C-C--C-SSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhccc-c--c-c--c-chhhhhccCcEEEEec
Confidence            689999 9999999987755443  234677754  22233333221 1  0 1  1 2357889999999995

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.61  E-value=0.029  Score=44.76  Aligned_cols=77  Identities=16%  Similarity=0.172  Sum_probs=48.8

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhc------CC
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TG   88 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~   88 (332)
                      +-.+..+|+|+|+ |.+|...++.+...|. ..|+.+|.++ ....+.++.-    ..+-.. ...++.+.+      ++
T Consensus        24 ~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa----~~~i~~-~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          24 DIEMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA----TDILNY-KNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TCCTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC----SEEECG-GGSCHHHHHHHHTTTSC
T ss_pred             CCCCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc----cccccc-cchhHHHHHHHHhhccC
Confidence            3344568999998 9999998888887765 3699999987 3334444431    111111 122333322      46


Q ss_pred             CcEEEEcCCCC
Q 020049           89 MDLVIIPAGVP   99 (332)
Q Consensus        89 aDiVi~~~g~~   99 (332)
                      +|+||.+.|.+
T Consensus        97 ~D~vid~~g~~  107 (174)
T d1jqba2          97 VDRVIMAGGGS  107 (174)
T ss_dssp             EEEEEECSSCT
T ss_pred             cceEEEccCCH
Confidence            99999998654

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.60  E-value=0.0041  Score=52.51  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |||+|||| |..|.+.|..|.+.|+  +|.+++.+.
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            78999999 9999999999999998  899999764

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.60  E-value=0.012  Score=48.42  Aligned_cols=89  Identities=21%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC-
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV-   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~-   98 (332)
                      .++|+|+|. |.+|+.++..+..-|.  +|+.+|.....+         .......    .++++.++.||+|++.... 
T Consensus        45 ~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~---------~~~~~~~----~~l~~l~~~~D~v~~~~plt  108 (199)
T d1dxya1          45 QQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG---------DHPDFDY----VSLEDLFKQSDVIDLHVPGI  108 (199)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS---------CCTTCEE----CCHHHHHHHCSEEEECCCCC
T ss_pred             ceeeeeeec-ccccccccccccccce--eeeccCCccchh---------hhcchhH----HHHHHHHHhcccceeeeccc
Confidence            368999999 9999999999986666  999999864210         0111222    2578889999999998421 


Q ss_pred             CCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        99 ~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +...++       -|.       +.+....+++++||++=
T Consensus       109 ~~T~~l-------i~~-------~~l~~mk~~a~lIN~aR  134 (199)
T d1dxya1         109 EQNTHI-------INE-------AAFNLMKPGAIVINTAR  134 (199)
T ss_dssp             GGGTTS-------BCH-------HHHHHSCTTEEEEECSC
T ss_pred             cccccc-------ccH-------HHhhccCCceEEEeccc
Confidence            111111       111       22333357889999973

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.57  E-value=0.046  Score=43.60  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhh---c------CC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENA---L------TG   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a---~------~~   88 (332)
                      +..+|.|+|| |.+|...++.+...|. ..|+.+|.++ ....+.++.   . ..+-.. ..++..+.   +      .+
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lG---a-~~vi~~-~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIG---A-DLTLNR-RETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTT---C-SEEEET-TTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECC-Cccchhheeccccccc-cccccccccccccccccccc---c-eEEEec-cccchHHHHHHHHHhhCCCC
Confidence            3458999998 9999999888888775 3799999987 233444432   1 122211 12332221   1      36


Q ss_pred             CcEEEEcCCCC
Q 020049           89 MDLVIIPAGVP   99 (332)
Q Consensus        89 aDiVi~~~g~~   99 (332)
                      +|+||.+.|.+
T Consensus       101 ~Dvvid~vG~~  111 (182)
T d1vj0a2         101 ADFILEATGDS  111 (182)
T ss_dssp             EEEEEECSSCT
T ss_pred             ceEEeecCCch
Confidence            99999998654

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.54  E-value=0.0067  Score=47.33  Aligned_cols=72  Identities=21%  Similarity=0.333  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++|||+|+||+|++|.-+...|.+.+ ...+|.++-.....|+..  ..  ....+...  ..+ .+.+.++|+++++.+
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~--~~~~~~~~--~~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GF--AESSLRVG--DVD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EE--TTEEEECE--EGG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--ee--ccccchhc--cch-hhhhccceEEEecCC
Confidence            36899999999999999999887544 345888886654222211  11  12233322  112 356789999999853

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.12  Score=43.41  Aligned_cols=115  Identities=19%  Similarity=0.150  Sum_probs=64.5

Q ss_pred             eEEEE-cCCCchHHHHHHHHHh---CCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCCHH---hhc-----
Q 020049           22 KVAIL-GAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQLE---NAL-----   86 (332)
Q Consensus        22 kI~Ii-Ga~G~vG~~~a~~l~~---~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d~~---~a~-----   86 (332)
                      ||+|| ||++.+|..+|..|++   .|.  .|++.|+++  ++..+.++.......++..+.. -++.+   +.+     
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            56555 9988999999999985   456  999999987  3444555543322344544332 23321   111     


Q ss_pred             ------CCCcEEEEcCCCCC--CCC----CC---hhhhHhhhHHHHHHHHHHHHhhC-----CCcEEEEecC
Q 020049           87 ------TGMDLVIIPAGVPR--KPG----MT---RDDLFNINAGIVRTLCEGIAKCC-----PNATVNLISN  138 (332)
Q Consensus        87 ------~~aDiVi~~~g~~~--~~g----~~---r~~~~~~n~~~~~~i~~~i~~~~-----p~a~viv~tN  138 (332)
                            -+-|++|..+|...  ..+    .+   ....+.-|+.....+.+.+.++-     +.+.||+++.
T Consensus        85 ~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS  156 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS  156 (259)
T ss_dssp             SCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECC
T ss_pred             hhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccc
Confidence                  24567777777532  111    22   22344566665555555554443     2356666653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.52  E-value=0.0063  Score=53.63  Aligned_cols=40  Identities=23%  Similarity=0.279  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHH
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT   61 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~   61 (332)
                      +++||+|||| |..|.+.|..|++.|+  +|.++|.+. .-|.+
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~   41 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNS   41 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCee
Confidence            3579999999 9999999999998888  999999877 33443

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.027  Score=44.30  Aligned_cols=65  Identities=12%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             CeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEccCCc--HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +||+|||+ |.+|.. .+..+...+...-+.++|.++.  ...+.++. .      ..   .+++++.+++.|+|+++.
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-~------~~---~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-I------PY---ADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-C------CB---CSSHHHHHTTCSEEEECS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-c------cc---cccchhhhhhcccccccc
Confidence            69999998 999975 5667766544434568898873  22223221 1      11   235667779999999883

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.51  E-value=0.15  Score=42.58  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=48.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc---HHHHHHHhcCCCCCeEEEEeCC---CC-----------HHhh
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQ---PQ-----------LENA   85 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~---~d-----------~~~a   85 (332)
                      ..|+||++.+|..+|..|+..|.  +|++.|++..   +..+.++...............   .+           ..+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            47899999999999999999998  9999998862   2334444433211111111001   11           1123


Q ss_pred             cCCCcEEEEcCCCCC
Q 020049           86 LTGMDLVIIPAGVPR  100 (332)
Q Consensus        86 ~~~aDiVi~~~g~~~  100 (332)
                      +...|++|..+|...
T Consensus        82 ~g~iDilvnnAG~~~   96 (266)
T d1mxha_          82 FGRCDVLVNNASAYY   96 (266)
T ss_dssp             HSCCCEEEECCCCCC
T ss_pred             hCCCCEEEECCccCC
Confidence            467999999998643

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.44  E-value=0.011  Score=47.63  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=42.8

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEEE
Q 020049           18 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVI   93 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~-~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVi   93 (332)
                      |+++||+|||+ |.+|.. .+..+...+...+|+ ++|.++.+..  .+.+....+  ..+   +|+++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~--~~~~~~~~~--~~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAE--EFAKMVGNP--AVF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHH--HHHHHHSSC--EEE---SCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhh--hhhcccccc--cee---eeeeccccccccceee
Confidence            45689999999 999986 567776544323555 7888763221  121110011  222   36777764  688898


Q ss_pred             EcC
Q 020049           94 IPA   96 (332)
Q Consensus        94 ~~~   96 (332)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            873

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.041  Score=46.99  Aligned_cols=115  Identities=16%  Similarity=0.138  Sum_probs=69.5

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCH----------Hhhc
Q 020049           21 FKV-AILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENAL   86 (332)
Q Consensus        21 ~kI-~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~----------~~a~   86 (332)
                      ++| .|+||++.+|..+|..|+.. +.  .|++.++++  .+..+.++............ +-+|.          .+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~-Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQL-DIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEEC-CTTCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEE-ecCCHHHHHHHHHHHHHhc
Confidence            467 47799999999999998864 66  899999987  34444556543222222111 11232          2334


Q ss_pred             CCCcEEEEcCCCCCCCC-C--Chh---hhHhhhHHHHHHHHHHHHhhC-CCcEEEEecC
Q 020049           87 TGMDLVIIPAGVPRKPG-M--TRD---DLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (332)
Q Consensus        87 ~~aDiVi~~~g~~~~~g-~--~r~---~~~~~n~~~~~~i~~~i~~~~-p~a~viv~tN  138 (332)
                      ..-|++|..||...... .  +..   ..+.-|+.....+.+.+-.+- +.+.||+++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            68999999999753221 1  111   234456666656666555443 3567777765

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.033  Score=46.37  Aligned_cols=102  Identities=20%  Similarity=0.195  Sum_probs=67.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC----------cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----------TPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~----------~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (332)
                      .+..||++.|| |..|..++..+...+. .+++++|.+-          ......++.+......     ...++.++++
T Consensus        24 l~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l~   96 (222)
T d1vl6a1          24 IEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETALE   96 (222)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHHT
T ss_pred             hhhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhcc
Confidence            34579999999 9999999998887664 5999999874          1112222322211111     1246789999


Q ss_pred             CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchH
Q 020049           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  144 (332)
Q Consensus        88 ~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t  144 (332)
                      ++|+++-+..    +|.-+.              +.|++.+++.+|+-.|||..-..
T Consensus        97 g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1          97 GADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             TCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSC
T ss_pred             Ccceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchh
Confidence            9998777642    222111              34667788998888899987654

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.39  E-value=0.0061  Score=49.53  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |||+|||| |++|..+|..|...+...+|.+++.+.
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999 999999999998766555999998754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.017  Score=46.59  Aligned_cols=75  Identities=20%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-H----HHHHHHhcCCCCCeEEEEeC--CCCHHhhcCCCcE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P----GVTADISHMDTGAVVRGFLG--QPQLENALTGMDL   91 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~----~~~~dl~~~~~~~~v~~~~~--~~d~~~a~~~aDi   91 (332)
                      +..+|+|+|+ |.+|.+++..|...+. .+|++++++.. .    ..+.++.... ...+.....  ..++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhhcccce
Confidence            3469999999 9999999999988765 48999999762 1    2222333221 122222211  1234566789999


Q ss_pred             EEEcC
Q 020049           92 VIIPA   96 (332)
Q Consensus        92 Vi~~~   96 (332)
                      ||.+.
T Consensus        94 iIN~T   98 (182)
T d1vi2a1          94 LTNGT   98 (182)
T ss_dssp             EEECS
T ss_pred             ecccc
Confidence            99984

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.009  Score=48.34  Aligned_cols=36  Identities=22%  Similarity=0.330  Sum_probs=32.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+++||+|||| |..|...|..|.+.|+  ++.|+|...
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            34579999999 9999999999999999  999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.033  Score=44.19  Aligned_cols=70  Identities=14%  Similarity=0.272  Sum_probs=46.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcH--HHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+.++|.|+|| |..+.++++.|...+.  +|.+++++..+  ..+..+.+.   ..+...  +.+ ......+|+||.+
T Consensus        16 ~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~--~~~-~~~~~~~dliIN~   86 (170)
T d1nyta1          16 RPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQAL--SMD-ELEGHEFDLIINA   86 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEEC--CSG-GGTTCCCSEEEEC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---cccccc--ccc-cccccccceeecc
Confidence            34569999999 9999999999998886  79999987532  223323221   233432  112 2335789999998


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      .
T Consensus        87 T   87 (170)
T d1nyta1          87 T   87 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.32  E-value=0.006  Score=49.02  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.||+|||| |..|...|..|.+.|+- +|.++|...
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~-~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYS-DITIFEKQE   38 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCC-CEEEEESSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCC-eEEEEEecC
Confidence            469999999 99999999999999872 589999876

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.29  E-value=0.024  Score=45.41  Aligned_cols=70  Identities=10%  Similarity=0.218  Sum_probs=43.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc--CCCcEEEEcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA   96 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVi~~~   96 (332)
                      +||+|||+ |.+|..++..+...+.. +|+ ++|.++.++.... .........+.+   +|+++.+  .+.|+|+++.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFA-TANNYPESTKIH---GSYESLLEDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHH-HHTTCCTTCEEE---SSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccccch-hccccccceeec---CcHHHhhhccccceeeecc
Confidence            69999998 99999999888766433 555 6788763222110 111112233333   3666665  5689999873

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.27  E-value=0.008  Score=50.53  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +||+|||| |..|.+.|..|++.|+  +|.++|...
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            58999999 9999999999999998  999999754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.27  E-value=0.065  Score=37.87  Aligned_cols=70  Identities=23%  Similarity=0.238  Sum_probs=50.1

Q ss_pred             CCeEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCC
Q 020049           20 GFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (332)
Q Consensus        20 ~~kI~IiGa~G~vG-~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~   98 (332)
                      .|||=+||- |-+| +++|..|.+.|+  .|.-.|..+.. ....|+...  ..+.  .+ .+ .+.++++|+||.+.++
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~G--i~i~--~g-h~-~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLG--IPIF--VP-HS-ADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT--CCEE--SS-CC-TTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCC--CeEE--ee-ec-ccccCCCCEEEEecCc
Confidence            379999999 7777 578999999999  99999987622 223366553  2232  22 23 4668999999999877


Q ss_pred             C
Q 020049           99 P   99 (332)
Q Consensus        99 ~   99 (332)
                      |
T Consensus        71 ~   71 (89)
T d1j6ua1          71 R   71 (89)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.24  E-value=0.0079  Score=47.21  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +||+|||| |++|..+|..|...+...+|+++|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999999 999999999998876555999999876

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.23  E-value=0.089  Score=44.01  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeC-CCC---HHhh------
Q 020049           21 FKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ---LENA------   85 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~---~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~a------   85 (332)
                      ++|.|+||++.+|..+|..|+.   .|.  .|++.++++  ++. +.++....  .++..+.. -+|   .+++      
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~-~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKE-LEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHH-HHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHH-HHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence            4699999999999999988864   455  899999987  332 22333221  22332211 112   1111      


Q ss_pred             ---cCCCcEEEEcCCCCCC
Q 020049           86 ---LTGMDLVIIPAGVPRK  101 (332)
Q Consensus        86 ---~~~aDiVi~~~g~~~~  101 (332)
                         ...-|++|..||....
T Consensus        78 ~~~~~~iDiLvnNAg~~~~   96 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPK   96 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCC
T ss_pred             HhhcCCcceEEeecccccc
Confidence               2458999999987543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.028  Score=44.57  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      ++++|+|- |.+|..+|..+...|.  .|..+|+++.++... ..+..     +.    ..+++++..+|+||.+.|...
T Consensus        25 k~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~-----~v----~~~~~a~~~adivvtaTGn~~   91 (163)
T d1li4a1          25 KVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY-----EV----TTMDEACQEGNIFVTTTGCID   91 (163)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC-----EE----CCHHHHTTTCSEEEECSSCSC
T ss_pred             CEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce-----Ee----eehhhhhhhccEEEecCCCcc
Confidence            58999999 9999999999998887  999999987433322 12211     11    246899999999999865432


Q ss_pred             CCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCCchH
Q 020049          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTV  144 (332)
Q Consensus       101 ~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~~~t  144 (332)
                      -  .+               .+.+++.-+++++.|++ -...+-.
T Consensus        92 v--I~---------------~eh~~~MKdgaIL~N~Ghfd~EId~  119 (163)
T d1li4a1          92 I--IL---------------GRHFEQMKDDAIVCNIGHFDVEIDV  119 (163)
T ss_dssp             S--BC---------------HHHHTTCCTTEEEEECSSSTTSBCH
T ss_pred             c--hh---------------HHHHHhccCCeEEEEeccccceecH
Confidence            1  11               12333344577777775 4444443

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=95.17  E-value=0.018  Score=47.13  Aligned_cols=74  Identities=15%  Similarity=0.176  Sum_probs=48.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe---------------------C
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFL---------------------G   78 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~---------------------~   78 (332)
                      +||.|||. |..|..++..+...++ ..+.+.+|.+.     .+|.+.....++..-.                     .
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999999 9999999998877664 35888898874     2233332222222100                     0


Q ss_pred             CCCHHhhcCCCcEEEEcCCCCC
Q 020049           79 QPQLENALTGMDLVIIPAGVPR  100 (332)
Q Consensus        79 ~~d~~~a~~~aDiVi~~~g~~~  100 (332)
                      .....+.++++|+||+++|...
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGG   96 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGG   96 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTS
T ss_pred             HHHHHHHhcCCCeEEEEEecCC
Confidence            0134567889999999887663

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.012  Score=43.76  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |.||+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            579999999 9999999999998887  999999876

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.10  E-value=0.014  Score=43.30  Aligned_cols=35  Identities=14%  Similarity=0.162  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            3579999999 9999999999998887  999999766

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.05  E-value=0.03  Score=43.39  Aligned_cols=32  Identities=16%  Similarity=0.233  Sum_probs=28.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~   54 (332)
                      .++|.|||| |.+|..-+..|+..|.  +|++++.
T Consensus        13 gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          13 DKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             TCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            468999999 9999999999999887  8899964

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.04  E-value=0.011  Score=49.80  Aligned_cols=35  Identities=20%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |+||+|||| |..|.++|..|.+.|+. .|.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~-~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIG-KVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            689999999 99999999999998842 788999865

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.03  E-value=0.016  Score=43.29  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            579999999 9999999999988777  999999754

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0038  Score=54.51  Aligned_cols=107  Identities=21%  Similarity=0.229  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEccCCc--HHHHHHHhcCC-CCCeEEEEeCCCCHHhhcC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVNT--PGVTADISHMD-TGAVVRGFLGQPQLENALT   87 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~----~~~-----~~ei~L~D~~~~--~~~~~dl~~~~-~~~~v~~~~~~~d~~~a~~   87 (332)
                      ..||+|.|| |..|..++..|..    .|+     ...++++|.+-+  ++...++.... ...+-.......++.++++
T Consensus        25 d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i~  103 (294)
T d1pj3a1          25 EHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVN  103 (294)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHH
T ss_pred             HcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHHH
Confidence            369999999 9999998876543    343     257999998651  11110111100 0011000011235777765


Q ss_pred             --CCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           88 --GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        88 --~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                        +.|++|-+.+.+   |.           +.+++.+.|.+.+++.+|+-.|||..
T Consensus       104 ~~kptvliG~S~~~---g~-----------ft~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         104 ILKPSTIIGVAGAG---RL-----------FTPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HHCCSEEEECCCSS---CC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hcCCceEEEecCCC---Cc-----------CCHHHHHHHHhcCCCcEEEEccCCCC
Confidence              788887775543   21           12466777888999999999999975

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.048  Score=43.49  Aligned_cols=55  Identities=18%  Similarity=0.393  Sum_probs=42.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|||.+..||..++..|++.+.  .+..++..                       +.++.+-+++||+||.+.|.|
T Consensus        39 Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~-----------------------t~~l~~~~~~aDivi~a~G~~   93 (170)
T d1a4ia1          39 GRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVATGQP   93 (170)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECCCCT
T ss_pred             cceEEEEecCCccchHHHHHHHhccC--ceEEEecc-----------------------cccHHHHHhhccchhhccccc
Confidence            46899999988899999999998887  78887753                       234456677788888777655

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.95  E-value=0.01  Score=47.58  Aligned_cols=74  Identities=19%  Similarity=0.315  Sum_probs=48.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCC---CCeEEEEeCCCCHHhhcCCCcEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      .+.++|.|+|+ |.++.++++.|...+   +|++++++.  .+..+.++.....   ...+..    .++...+.++|+|
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dli   87 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDII   87 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhh
Confidence            45569999999 999999888885433   899999876  3334444433211   112332    1345667899999


Q ss_pred             EEcCCCC
Q 020049           93 IIPAGVP   99 (332)
Q Consensus        93 i~~~g~~   99 (332)
                      |.+...+
T Consensus        88 In~tp~g   94 (177)
T d1nvta1          88 INATPIG   94 (177)
T ss_dssp             EECSCTT
T ss_pred             ccCCccc
Confidence            9985433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.86  E-value=0.018  Score=43.25  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++.+|+|||| |++|.-+|..|.+.+.  +|.+++..+
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            3469999999 9999999999999887  999999876

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.83  E-value=0.035  Score=44.12  Aligned_cols=55  Identities=22%  Similarity=0.482  Sum_probs=44.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++|+|||.+..||..++..|.+.+.  .|...+..                       +.++.+-+++||+||.++|.|
T Consensus        37 GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~p   91 (166)
T d1b0aa1          37 GLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGKP   91 (166)
T ss_dssp             TCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCCT
T ss_pred             cceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccCc
Confidence            46899999988899999999988876  67766532                       335667789999999998866

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.019  Score=43.14  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.|++|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            4579999999 9999999999998887  999999865

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=94.70  E-value=0.2  Score=41.84  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=69.4

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-----cHHHHHHHhcCCCCCeEEEEeC-CCCHH---h--
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLG-QPQLE---N--   84 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~~-~~d~~---~--   84 (332)
                      .|.+...|.|+||+|.+|..++..|++.|.. .|+|+.++.     ......++....  ..+..+.. -+|..   +  
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~-~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAP-HLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCS-EEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhh
Confidence            3445558999999999999999999998862 688886542     333444554432  34443322 12311   1  


Q ss_pred             -hc---CCCcEEEEcCCCCCCCC---CCh---hhhHhhhHHHHHHHHHHHHhhCCCcEEEEec
Q 020049           85 -AL---TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (332)
Q Consensus        85 -a~---~~aDiVi~~~g~~~~~g---~~r---~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t  137 (332)
                       .+   -..|.|++.+|......   ++.   ...+.-|+.....+.+.+... +.+.++++|
T Consensus        82 ~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             HTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence             11   24788899888654322   222   223455777777776666544 344555554

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.68  E-value=0.02  Score=43.03  Aligned_cols=35  Identities=20%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +..+|+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3468999999 9999999999999888  999998765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.65  E-value=0.012  Score=49.83  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      -|+|||| |-+|.++|+.|++.|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3999999 9999999999999997  999999865

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.64  E-value=0.027  Score=42.93  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+.||+|||| |++|.-+|..|...|.  ++.+++...
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            4569999999 9999999999999888  999999865

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.61  E-value=0.017  Score=49.06  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++.||+|||| |.-|.+.|..|.+.|+  +|.+++.+.
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4569999999 9999999999999998  999998765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.3  Score=41.66  Aligned_cols=154  Identities=12%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             CeEEE-EcCCCchHHHHHHHHHhCCCCcEEEEEc---cCC--cHHH---HHHHhcCCCCCeEEEEe-CCCCHHh---h--
Q 020049           21 FKVAI-LGAAGGIGQPLAMLMKINPLVSVLHLYD---VVN--TPGV---TADISHMDTGAVVRGFL-GQPQLEN---A--   85 (332)
Q Consensus        21 ~kI~I-iGa~G~vG~~~a~~l~~~~~~~ei~L~D---~~~--~~~~---~~dl~~~~~~~~v~~~~-~~~d~~~---a--   85 (332)
                      +||++ +||++.+|..+|..|+..|.  .+++++   .+.  ....   +..+...  ...+..+. +-+|.++   +  
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~   77 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACP--PGSLETLQLDVRDSKSVAAARE   77 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCC--TTSEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhcc--CCceEEEeccccchHhhhhhhh
Confidence            47765 59999999999999999886  444443   222  1111   1222221  23333322 1233211   1  


Q ss_pred             ---cCCCcEEEEcCCCCCCCC---CC---hhhhHhhh----HHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHH
Q 020049           86 ---LTGMDLVIIPAGVPRKPG---MT---RDDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (332)
Q Consensus        86 ---~~~aDiVi~~~g~~~~~g---~~---r~~~~~~n----~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~  152 (332)
                         -...|++|..+|......   .+   ....+.-|    +...+.+.+.|.+.. .+.||+++.-....         
T Consensus        78 ~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~~---------  147 (285)
T d1jtva_          78 RVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLM---------  147 (285)
T ss_dssp             TCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTS---------
T ss_pred             hccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhcC---------
Confidence               146899999988654322   12   12233344    445667777777654 45566664322111         


Q ss_pred             HhCCCCCCceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       153 ~~~~~~~~kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                         +.|..-.++.+.-.-..|.+.++..+.  +..|++..+
T Consensus       148 ---~~~~~~~Y~asKaal~~l~~~la~El~--~~gIrVn~V  183 (285)
T d1jtva_         148 ---GLPFNDVYCASKFALEGLCESLAVLLL--PFGVHLSLI  183 (285)
T ss_dssp             ---CCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---CCCCchHHHHHHHHHHHHHHHHHHHhh--ccCcEEEEE
Confidence               122222233332223445666776664  455655444

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.51  E-value=0.019  Score=50.45  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +||+|||| |..|...|..|+..+...+|++++.+.
T Consensus         5 KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            47999999 999999999888877666999999875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.42  E-value=0.047  Score=43.18  Aligned_cols=66  Identities=15%  Similarity=0.204  Sum_probs=43.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +..||+|+|+ |.++.++++.|.+.+. .+|.+++++..++.  .|.+..  . .....   .  ....++|+||.+-
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka~--~L~~~~--~-~~~~~---~--~~~~~~DliINaT   81 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTGQ--YLAALY--G-YAYIN---S--LENQQADILVNVT   81 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHHH--HHHHHH--T-CEEES---C--CTTCCCSEEEECS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHHH--HHHHhh--h-hhhhh---c--ccccchhhheecc
Confidence            4568999999 9999999999998875 47999988753222  222111  0 11111   1  1236899999974

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.41  E-value=0.011  Score=50.47  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|||| |.+|.++|..|.+.|+  ++.++|...
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            47999999 9999999999999998  999999865

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.37  E-value=0.22  Score=40.14  Aligned_cols=113  Identities=13%  Similarity=0.129  Sum_probs=61.9

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhc------CC
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL------TG   88 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~   88 (332)
                      +-.+..+|+|+|| |.+|...+..++..+. ..|+.+|.++. ...+.++.     ..........++.+.+      .+
T Consensus        22 ~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~rl~~a~~~G-----a~~~~~~~~~~~~~~i~~~t~g~g   94 (195)
T d1kola2          22 GVGPGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPE   94 (195)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCCCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchhhHhhhhcc-----ccEEEeCCCcCHHHHHHHHhCCCC
Confidence            3344468999998 9999887777766664 38999998762 23333221     2222211233443332      47


Q ss_pred             CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecC
Q 020049           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (332)
Q Consensus        89 aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tN  138 (332)
                      +|++|.+.|.+........-.-......+.+..+.+   .|.+.|+++..
T Consensus        95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~---r~gG~v~~~G~  141 (195)
T d1kola2          95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVT---RVAGKIGIPGL  141 (195)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE---EEEEEEEECSC
T ss_pred             cEEEEECccccccCCcccceeecCcHHHHHHHHHHH---hcCCEEEEeee
Confidence            999999987553221110000011223333333333   37888887753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.31  E-value=0.036  Score=48.77  Aligned_cols=68  Identities=10%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +..++|||+ |..+...+..+...-.+.+|.++|+++  .+..+.++.+..  ..+..     +..+++.+||+|+.+
T Consensus       125 ~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~~-----~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISASV-----QPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEEE-----CCHHHHTSSSEEEEC
T ss_pred             ccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Ccccc-----chhhhhccccEEEEe
Confidence            357999999 999988877666544467999999876  344455555432  22222     226889999999886

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.29  E-value=0.019  Score=47.48  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|||| |..|.+.|..|...+...+|.++|..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999999 999999999887664434999999876

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.29  E-value=0.019  Score=39.73  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++|+|+|+ |+.|+-++......|+  +++.+|.++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            47999999 9999999988888888  999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.25  E-value=0.092  Score=41.48  Aligned_cols=73  Identities=15%  Similarity=0.239  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-----CCCcEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL-----TGMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-----~~aDiV   92 (332)
                      +..+|+|+|+ |.+|...+..+...+.. .|+..|.++ ....+.++.-    ..+-.. ...|+.+.+     .++|+|
T Consensus        28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~-~v~~~~~~~~k~~~a~~~Ga----~~~i~~-~~~~~~~~i~~~t~gg~D~v  100 (174)
T d1f8fa2          28 PASSFVTWGA-GAVGLSALLAAKVCGAS-IIIAVDIVESRLELAKQLGA----THVINS-KTQDPVAAIKEITDGGVNFA  100 (174)
T ss_dssp             TTCEEEEESC-SHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHTC----SEEEET-TTSCHHHHHHHHTTSCEEEE
T ss_pred             CCCEEEEeCC-CHHHhhhhhcccccccc-eeeeeccHHHHHHHHHHcCC----eEEEeC-CCcCHHHHHHHHcCCCCcEE
Confidence            3458999999 99999999888776652 677888876 3344444431    222211 233444433     248999


Q ss_pred             EEcCCC
Q 020049           93 IIPAGV   98 (332)
Q Consensus        93 i~~~g~   98 (332)
                      |.+.|.
T Consensus       101 id~~G~  106 (174)
T d1f8fa2         101 LESTGS  106 (174)
T ss_dssp             EECSCC
T ss_pred             EEcCCc
Confidence            999753

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.24  E-value=0.13  Score=40.25  Aligned_cols=73  Identities=12%  Similarity=0.088  Sum_probs=48.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC--c-HHHHH---HHhcCCCCCeEEEEeCCCCHHhhcCCCcE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~~~---dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      .+..||+++|-...|..+++..+...|.  ++.++-...  . .....   +..... ...+..   +.|..+++++||+
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~d~~ea~~~adv   75 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAES-GGSFEL---LHDPVKAVKDADV   75 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEE---ESCHHHHTTTCSE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcc-cceEEE---ecCHHHHhhhccE
Confidence            3457999999966777888877777776  899997754  1 21111   111111 234554   3477899999999


Q ss_pred             EEEcC
Q 020049           92 VIIPA   96 (332)
Q Consensus        92 Vi~~~   96 (332)
                      |..+-
T Consensus        76 iy~~~   80 (163)
T d1pvva2          76 IYTDV   80 (163)
T ss_dssp             EEECC
T ss_pred             Eeecc
Confidence            98763

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.22  E-value=0.022  Score=42.15  Aligned_cols=35  Identities=14%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.|++|+|| |++|.-+|..|...|.  +|.+++..+
T Consensus        20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          20 LPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            3579999999 9999999999998887  999999865

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.21  E-value=0.29  Score=41.19  Aligned_cols=31  Identities=19%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        24 ~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|+||++.+|..+|..|+..|.  +|++.|.+.
T Consensus         6 lITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           6 LVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            4559988999999999999998  899988765

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.19  E-value=0.032  Score=41.27  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||.|+|+ |+.|.-++......|+  +++.+|.++
T Consensus        12 ~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          12 TRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            58999999 9999999999888888  999999875

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.18  E-value=0.072  Score=43.87  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~   56 (332)
                      .||.|||. |.-|..++..+...++ ..+.+.+|.+.
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~   51 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA   51 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH
Confidence            59999999 9999999998887764 45888888864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.08  E-value=0.0081  Score=48.25  Aligned_cols=78  Identities=19%  Similarity=0.228  Sum_probs=50.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc----HHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +.++|+|||.|.-||..++..|++.+.  .+...|.+..    +.....+.+.. ...+..+. ..++++....||+||.
T Consensus        28 ~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~lk~~~~~aDIvIs  103 (171)
T d1edza1          28 YGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHH-VEDLGEYS-EDLLKKCSLDSDVVIT  103 (171)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCE-EEEEEECC-HHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeec-cccccccc-hhHHhhccccCCEEEE
Confidence            346899999977899999999998877  8888887641    10001111111 11222221 1236777889999999


Q ss_pred             cCCCCC
Q 020049           95 PAGVPR  100 (332)
Q Consensus        95 ~~g~~~  100 (332)
                      .+|.|.
T Consensus       104 avG~p~  109 (171)
T d1edza1         104 GVPSEN  109 (171)
T ss_dssp             CCCCTT
T ss_pred             ccCCCc
Confidence            988764

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.07  E-value=0.023  Score=47.90  Aligned_cols=163  Identities=16%  Similarity=0.107  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEe-CCCCHH----------hhc-
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQLE----------NAL-   86 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a~-   86 (332)
                      .++.|.|+||++.+|..+|..|+..|....|++.++++.+.  .++.... ..++..+. .-++.+          +.+ 
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~--~~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA--TELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC--HHHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHH--HHHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            45679999999999999999999988644788888776221  2233222 22333222 112321          111 


Q ss_pred             -CCCcEEEEcCCCCCCC----CCCh---hhhHhhhH----HHHHHHHHHHHhhC----------CCcEEEEecCCCCchH
Q 020049           87 -TGMDLVIIPAGVPRKP----GMTR---DDLFNINA----GIVRTLCEGIAKCC----------PNATVNLISNPVNSTV  144 (332)
Q Consensus        87 -~~aDiVi~~~g~~~~~----g~~r---~~~~~~n~----~~~~~i~~~i~~~~----------p~a~viv~tNP~~~~t  144 (332)
                       .+-|++|..||.....    ..+.   ...+..|+    ...+.+.+.|++..          ..+.+++.+.......
T Consensus        79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~  158 (250)
T d1yo6a1          79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT  158 (250)
T ss_dssp             GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred             CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccccccccc
Confidence             2389999999964321    1222   22334443    44555566665432          2355666554433321


Q ss_pred             HHHHHHHHHhCCCCCC--ceEEeehhhHHHHHHHHHHHhCCCCCCCceeEE
Q 020049          145 PIAAEVFKKAGTYDPK--KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (332)
Q Consensus       145 ~~~~~~~~~~~~~~~~--kviG~~~ld~~r~~~~la~~l~v~~~~v~~~v~  193 (332)
                      .       ...+.+..  -.++.+...-..+.+.+|..+.  +..|++..+
T Consensus       159 ~-------~~~~~~~~~~~aY~aSKaal~~l~~~la~el~--~~gI~v~~i  200 (250)
T d1yo6a1         159 D-------NTSGSAQFPVLAYRMSKAAINMFGRTLAVDLK--DDNVLVVNF  200 (250)
T ss_dssp             T-------CCSTTSSSCBHHHHHHHHHHHHHHHHHHHHTG--GGTCEEEEE
T ss_pred             C-------CcccccchhHHHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            0       01111111  1233343344456777777764  555655554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.96  E-value=0.013  Score=48.32  Aligned_cols=37  Identities=14%  Similarity=0.147  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~   56 (332)
                      +|.||+|||| |.-|.+.|..|+..|+     ..+|.++|...
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4679999999 9999999999988763     23899999876

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.035  Score=41.69  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |.||+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            469999999 9999999999998887  999999875

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.92  E-value=0.55  Score=35.63  Aligned_cols=113  Identities=9%  Similarity=0.005  Sum_probs=67.1

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++.|+||||+   +..|..++..|...|+  +|+.+..+..     ++.      ....   ..++.+.=...|+|++..
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~-----~i~------G~~~---~~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE-----EVL------GRKC---YPSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EET------TEEC---BSSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc-----ccC------CCcc---cccccccCccceEEEEEe
Confidence            3479999996   5788999999999998  8999976430     010      1111   224444334689988874


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-eh-hhHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM-LDVVR  172 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~~-ld~~r  172 (332)
                                      +.+.+.++.+++.+..++++++....-.+..    .+.+++ .|+   +++|= |. .+..|
T Consensus        83 ----------------p~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~----~~~a~~-~gi---~vig~~C~~v~~~r  136 (139)
T d2d59a1          83 ----------------KPKLTMEYVEQAIKKGAKVVWFQYNTYNREA----SKKADE-AGL---IIVANRCMMREHER  136 (139)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCSEEEECTTCCCHHH----HHHHHH-TTC---EEEESCCHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCEEEEeccccCHHH----HHHHHH-CCC---EEEcCCcChhhhhh
Confidence                            1455666666666777776444333322222    233333 343   78886 73 34444

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.87  E-value=0.03  Score=42.01  Aligned_cols=35  Identities=14%  Similarity=-0.036  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.|++|||| |++|.-+|..|...|.  +|.++..++
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            4568999999 9999999999998887  888887654

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.83  E-value=0.004  Score=51.64  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=26.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEcc
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDV   54 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~----~~ei~L~D~   54 (332)
                      |||+|||| |-+|.++|..|++.|+    ..++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999999 9999999999998764    235556554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.77  E-value=0.023  Score=46.19  Aligned_cols=33  Identities=21%  Similarity=0.318  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ||+|||| |..|.+.|..|.+.|+. +|.++|...
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~~-~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGIT-DLLILEATD   34 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTCC-CEEEECSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCCC-cEEEEECCC
Confidence            8999999 99999999999998852 699999865

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.76  E-value=0.098  Score=42.04  Aligned_cols=71  Identities=15%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CCeEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHH---HHHhcCCCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           20 GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVT---ADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa-~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~---~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ..||+++|= ..+|..+++..+...|.  ++.++-...   .....   .++.... ...+..   +.|.++++++||+|
T Consensus         5 ~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~d~~eai~~aDvV   78 (185)
T d1dxha2           5 DISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTL---TEDPKEAVKGVDFV   78 (185)
T ss_dssp             GCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEE---ESCHHHHTTTCSEE
T ss_pred             CCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEE---EeChhhccccccEE
Confidence            479999994 23788888888887777  999998754   12222   2222111 244554   35789999999998


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      ....
T Consensus        79 yt~~   82 (185)
T d1dxha2          79 HTDV   82 (185)
T ss_dssp             EECC
T ss_pred             Eeeh
Confidence            8763

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.76  E-value=0.04  Score=45.72  Aligned_cols=36  Identities=28%  Similarity=0.327  Sum_probs=32.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..+.||+|||| |..|.+.|..|.+.|+  ++.++|...
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            34579999999 9999999999999998  999999865

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.73  E-value=0.19  Score=39.04  Aligned_cols=99  Identities=19%  Similarity=0.237  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhh----cCCCcE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDL   91 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----~~~aDi   91 (332)
                      -.+..+|+|+|+ |.+|...+..+...|.  +++.+|.++ ....+.++.   . ..+-.. ...+..+.    ..+.|.
T Consensus        25 ~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~G---a-~~~i~~-~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          25 ARPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLG---A-SLTVNA-RQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---C-SEEEET-TTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccC---c-cccccc-cchhHHHHHHHhhcCCcc
Confidence            344468999998 9999999988888885  899999876 233333332   1 122111 22343333    345666


Q ss_pred             EEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        92 Vi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      +|...+.+               ..+.+   .++-..|.+.+++++.|.+
T Consensus        97 ~i~~~~~~---------------~~~~~---~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          97 VLVTAVSN---------------SAFGQ---AIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             EEECCSCH---------------HHHHH---HHTTEEEEEEEEECCCCSS
T ss_pred             cccccccc---------------hHHHH---HHHHhcCCcEEEEEEecCC
Confidence            67664321               11222   3333347888888865543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.028  Score=47.32  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|.. +|+|+|-+.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gvg-~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGVG-NLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCCC-eEEEECCcc
Confidence            48999999 99999999999999874 999999875

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.70  E-value=0.076  Score=41.57  Aligned_cols=71  Identities=21%  Similarity=0.259  Sum_probs=47.0

Q ss_pred             CCeEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHH---HHhcCCCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           20 GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa-~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~---dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      ..||+++|= ..+|..+++..+...|.  ++++.-...   ......   ++.... ...+..   ++|+++++++||+|
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~-~~~i~~---~~d~~~ai~~aDvi   76 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKET-DGSVSF---TSNLEEALAGADVV   76 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHH-CCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhc-CCceEE---EecHHHhhhhhhhe
Confidence            469999993 24688888888877777  888887644   122111   111111 245554   35789999999999


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      ..+.
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            9873

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.65  E-value=0.064  Score=42.27  Aligned_cols=67  Identities=21%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      .++++|+|= |.+|..+|..+...|.  .|..+++++.++... ..+.   -  +.    .+++++++.+|+||.+-|..
T Consensus        23 Gk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdG---f--~v----~~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          23 GKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEG---F--NV----VTLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             TSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTT---C--EE----CCHHHHTTTCSEEEECCSSS
T ss_pred             CCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcC---C--cc----CchhHccccCcEEEEcCCCC
Confidence            368999999 9999999999998777  999999998443322 1121   1  11    24689999999999986543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.08  Score=41.58  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=49.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHH-hhcCCCcEEEE
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE-NALTGMDLVII   94 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~-~a~~~aDiVi~   94 (332)
                      -.+..+|.|+|+ |.+|...++.+...|.  +++.+|.++ ....+.++.-    ..+.......++. ......|+|+.
T Consensus        25 ~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa----~~~i~~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGA----DHYIATLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTC----SEEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCC----cEEeeccchHHHHHhhhcccceEEE
Confidence            344569999998 9999998888877787  899999987 3444555531    1121111122322 33467899999


Q ss_pred             cCCCC
Q 020049           95 PAGVP   99 (332)
Q Consensus        95 ~~g~~   99 (332)
                      +.+.+
T Consensus        98 ~~~~~  102 (168)
T d1piwa2          98 CASSL  102 (168)
T ss_dssp             CCSCS
T ss_pred             EecCC
Confidence            87644

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=93.52  E-value=0.0095  Score=52.00  Aligned_cols=107  Identities=16%  Similarity=0.218  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTG   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~----~~~-----~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~   88 (332)
                      ...||+|.|| |..|..++..+..    .|.     ..+++++|.+- ....-.|+.+... ...+......++.++.+.
T Consensus        24 ~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~-~~a~~~~~~~~l~~~i~~  101 (298)
T d1gq2a1          24 SDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKE-HFAHEHCEMKNLEDIVKD  101 (298)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGG-GGCBSCCCCCCHHHHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHH-HHHHHhhhhhhhHHHhhc
Confidence            3469999999 9999998876642    243     24799999875 1111112221110 000000012244555543


Q ss_pred             --CcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           89 --MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        89 --aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                        .+++|-+.+.+   |.           +.+++.+.|.+++++.+|+-.|||..
T Consensus       102 vkptvliG~s~~~---g~-----------ft~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1         102 IKPTVLIGVAAIG---GA-----------FTQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             HCCSEEEECSCCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             cChheeEeccccc---Cc-----------CCHHHHHHHHhhCCCCEEEEccCCCC
Confidence              55666665444   21           12355667778899999998999975

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.51  E-value=0.033  Score=46.71  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.2

Q ss_pred             Ce-EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FK-VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~k-I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      || |.|+||++.+|..+|..|+..|.  +|++.|+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            44 57889999999999999999998  999999875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.47  E-value=0.052  Score=40.32  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.||+|||| |++|.-+|..|...|.  +|.++...+
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            4579999999 9999999999998887  888888665

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=93.47  E-value=0.0095  Score=52.17  Aligned_cols=103  Identities=14%  Similarity=0.179  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEccCCc--HHHHHHHhcC--CCCCeEEEEeCCCCHHhhc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVNT--PGVTADISHM--DTGAVVRGFLGQPQLENAL   86 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~----~~~~-----~ei~L~D~~~~--~~~~~dl~~~--~~~~~v~~~~~~~d~~~a~   86 (332)
                      ..||+|.|| |..|..++..|..    .|+-     .+++++|.+-+  ... .|+...  .+.....   ...++.+++
T Consensus        25 d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r-~d~~~~k~~~a~~~~---~~~~l~~~i   99 (308)
T d1o0sa1          25 QEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR-KEMNPRHVQFAKDMP---ETTSILEVI   99 (308)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC-SSCCGGGTTTCBSSC---CCCCHHHHH
T ss_pred             HcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCC-cccCHHHHHHHHhcc---cCCcHHHHH
Confidence            469999999 9999998876643    3432     46999998651  111 122111  1111111   123455555


Q ss_pred             CCC--cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           87 TGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        87 ~~a--DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      +.+  +++|-+.+.+   |.           +.+++.+.|.+++++.+|+-.|||..
T Consensus       100 ~~~kptvliG~s~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1         100 RAARPGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             HHHCCSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             hccccccEEeccccc---CC-----------CCHHHHHHHHhhCCCcEEEEccCCCC
Confidence            444  4555554433   21           12355677888999999988999985

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.46  E-value=0.041  Score=41.06  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+|+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            58999999 9999999999998887  999999876

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.45  E-value=0.58  Score=36.71  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC-HH---h--hcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ-LE---N--ALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d-~~---~--a~~~aDiV   92 (332)
                      ...|+|+|+ |.+|...+..+...|. .+|+.+|.++ ....+.++.-..   .+. .....+ .+   +  .=.++|+|
T Consensus        30 g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~---~in-~~~~~~~~~~~~~~~~g~G~d~v  103 (176)
T d1d1ta2          30 GSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE---CIS-PKDSTKPISEVLSEMTGNNVGYT  103 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE---EEC-GGGCSSCHHHHHHHHHTSCCCEE
T ss_pred             CCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE---EEC-ccccchHHHHHHHHhccccceEE
Confidence            357999999 9999999988888775 3899999987 344555553211   111 111111 11   1  22689999


Q ss_pred             EEcCCC
Q 020049           93 IIPAGV   98 (332)
Q Consensus        93 i~~~g~   98 (332)
                      |.+.|.
T Consensus       104 i~~~g~  109 (176)
T d1d1ta2         104 FEVIGH  109 (176)
T ss_dssp             EECSCC
T ss_pred             EEeCCc
Confidence            999653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.42  E-value=0.03  Score=43.81  Aligned_cols=69  Identities=20%  Similarity=0.408  Sum_probs=44.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ||+|+||+|++|.-+...|...++ ..++.++..++..|.  .+...  ........ .  .+..+.++|+++++.+
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~--~~~~~--~~~~~~~~-~--~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--SLKFK--DQDITIEE-T--TETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC--EEEET--TEEEEEEE-C--CTTTTTTCSEEEECSC
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc--ccccc--CCcccccc-c--chhhhhhhhhhhhccC
Confidence            899999999999999998887763 568888765432221  11111  12222221 1  2456789999999853

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.34  E-value=0.39  Score=37.77  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCC-CHHh-----hcCCCc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQP-QLEN-----ALTGMD   90 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~-d~~~-----a~~~aD   90 (332)
                      .+..+|+|+|+ |.+|...++.+...|. ..|+..|.++ ....+.++...    .+....... ..+.     .-.++|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGAT----DCLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCC----cccCCccchhhhhhhHhhhhcCCCc
Confidence            34468999998 9999999988888775 3789999987 34445544321    111111011 1111     127899


Q ss_pred             EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCC-cEEEEecCCCCc
Q 020049           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNS  142 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~-a~viv~tNP~~~  142 (332)
                      +||.+.|.+               ..+   -..++-..|. +.++++..|.+-
T Consensus       101 ~vie~~G~~---------------~~~---~~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         101 YSLDCAGTA---------------QTL---KAAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEEESSCCH---------------HHH---HHHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEEecccc---------------hHH---HHHHHHhhcCCeEEEecCCCCCc
Confidence            999997644               111   2223323464 788888776553

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.32  E-value=0.077  Score=43.87  Aligned_cols=71  Identities=17%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             CCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEccCCcHH--HHHHHhcCCCCCeEEEEeCCCCHHhhcC--CCcEE
Q 020049           19 AGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALT--GMDLV   92 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~-~a~~l~~~~~~~ei~-L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiV   92 (332)
                      ++.||+|||+ |.+|.. ++..+...+.. +|+ ++|+++.++  .+.++. .. ...+..   .+|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~---~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYD---YSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEEC---SSSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-cccccc---cCchhhhcccccceee
Confidence            4569999999 999974 55555554433 555 899876322  222221 11 123443   246667674  58889


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8873

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.31  E-value=0.04  Score=41.79  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL   45 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~   45 (332)
                      |||+|.|++|.||+.++..+...++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999999999999887777766

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.28  E-value=0.3  Score=37.63  Aligned_cols=100  Identities=17%  Similarity=0.220  Sum_probs=58.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHH----hhcCCCc
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLE----NALTGMD   90 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~----~a~~~aD   90 (332)
                      +-.+..+|+|.|+ |.+|...+..+...+.  +++.+|.++. ...+.++   .. ..+... ...|..    +...+.|
T Consensus        24 ~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~---Ga-~~~~~~-~~~~~~~~~~~~~~~~~   95 (168)
T d1rjwa2          24 GAKPGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKEL---GA-DLVVNP-LKEDAAKFMKEKVGGVH   95 (168)
T ss_dssp             TCCTTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---TC-SEEECT-TTSCHHHHHHHHHSSEE
T ss_pred             CCCCCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhc---Cc-ceeccc-ccchhhhhcccccCCCc
Confidence            3344568999998 9999998888888777  8999998762 2233322   11 122211 123332    3346778


Q ss_pred             EEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCC
Q 020049           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (332)
Q Consensus        91 iVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~  141 (332)
                      .+|++++.+               ..+....+.   ..|++.++++..|.+
T Consensus        96 ~~v~~~~~~---------------~~~~~a~~~---l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2          96 AAVVTAVSK---------------PAFQSAYNS---IRRGGACVLVGLPPE  128 (168)
T ss_dssp             EEEESSCCH---------------HHHHHHHHH---EEEEEEEEECCCCSS
T ss_pred             eEEeecCCH---------------HHHHHHHHH---hccCCceEecccccC
Confidence            888875422               122222222   247888888755443

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.22  E-value=0.059  Score=39.79  Aligned_cols=35  Identities=9%  Similarity=0.100  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ++.+|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            3569999999 9999999999998876  899999865

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.14  E-value=0.055  Score=43.18  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=45.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhc-CC----CCCeEE-----EEeCCCCHHhhcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MD----TGAVVR-----GFLGQPQLENALTG   88 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~----~~~~v~-----~~~~~~d~~~a~~~   88 (332)
                      +++||+|.|- |.+|..++..+..++-..-+.+-|..+......-+.. ..    ....+.     .+....++.+.+.+
T Consensus         1 M~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           1 MKVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             CcEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhcc
Confidence            3579999999 9999999998887764433445565442211110111 10    000000     01113356777899


Q ss_pred             CcEEEEcCC
Q 020049           89 MDLVIIPAG   97 (332)
Q Consensus        89 aDiVi~~~g   97 (332)
                      +|+|+.+.|
T Consensus        80 vDvViEcTG   88 (172)
T d2czca2          80 VDIIVDATP   88 (172)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEECCC
Confidence            999999965

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=92.97  E-value=0.039  Score=47.27  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +|+|||| |-+|.++|+.|+..|+. +|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~-~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWN-NITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCC-CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCC-cEEEEeCCC
Confidence            7999999 99999999999988752 699999864

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.72  E-value=0.11  Score=41.55  Aligned_cols=72  Identities=18%  Similarity=0.167  Sum_probs=44.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EccCCc-HHHHHHHhcCC---C--------CCeEEEEeCCCCHHhhcC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNT-PGVTADISHMD---T--------GAVVRGFLGQPQLENALT   87 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L-~D~~~~-~~~~~dl~~~~---~--------~~~v~~~~~~~d~~~a~~   87 (332)
                      .||+|.|- |.+|..++..+.+++-. +|+- -|..+. .....-..+..   .        ...+.   ...++++.+.
T Consensus         2 IKVaINGf-GRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~~   76 (178)
T d1b7go1           2 VNVAVNGY-GTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLIK   76 (178)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHHH
T ss_pred             eEEEEECC-CHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhhh
Confidence            58999998 99999999999887644 5544 455442 22211111110   0        01111   1345677788


Q ss_pred             CCcEEEEcCC
Q 020049           88 GMDLVIIPAG   97 (332)
Q Consensus        88 ~aDiVi~~~g   97 (332)
                      ++|+||.+.|
T Consensus        77 ~vDiViecTG   86 (178)
T d1b7go1          77 TSDIVVDTTP   86 (178)
T ss_dssp             HCSEEEECCS
T ss_pred             cCCEEEECCC
Confidence            9999999964

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.54  E-value=0.047  Score=43.98  Aligned_cols=32  Identities=22%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      -|+|||| |..|.+.|..|++.|.  +|.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            4899999 9999999999999998  899999976

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.40  E-value=0.049  Score=46.02  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=28.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |+|||| |.+|.++|+.|++.|+  +|+++|...
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            899999 9999999999999998  999999754

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.40  E-value=0.16  Score=41.34  Aligned_cols=90  Identities=19%  Similarity=0.238  Sum_probs=56.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEE-------E--------------eCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRG-------F--------------LGQ   79 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-------~--------------~~~   79 (332)
                      +|-|||- |..|.+++..+...++ ..+++.+|.|. +    +|.......++..       .              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~-~----~L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA-Q----ALLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH-H----HHHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH-H----HHhcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6889999 9999999999988775 45888888764 1    1222221111111       0              001


Q ss_pred             CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHH
Q 020049           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI  124 (332)
Q Consensus        80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i  124 (332)
                      ....++++++|+||++||.....|       ..=.|++-++++..
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~  114 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKL  114 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHc
Confidence            234578899999999998764333       22266666666664

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.38  E-value=0.19  Score=39.60  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhc------CCCcE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL   91 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aDi   91 (332)
                      .+..+|.|+||+|.+|...++.+...|.  +++..+.++.  ....+.... ...+... .+.|+.+.+      +++|+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~G-a~~vi~~-~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLG-VEYVGDS-RSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTC-CSEEEET-TCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccc--cceeeecccc--ccccccccc-ccccccC-CccCHHHHHHHHhCCCCEEE
Confidence            3346899999989999999998888787  7777765432  112233322 1222222 244665555      67999


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      |+.+.|
T Consensus        98 v~d~~g  103 (183)
T d1pqwa_          98 VLNSLA  103 (183)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.27  E-value=0.27  Score=36.49  Aligned_cols=95  Identities=14%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCH----HhhcCCCcEEEEcCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL----ENALTGMDLVIIPAG   97 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDiVi~~~g   97 (332)
                      +|.|+|. |.+|..++..|.  +.  +++++|.++....  .+..... .-+.+  ..++.    +..+..|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~--~~--~i~vi~~d~~~~~--~~~~~~~-~~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELR--GS--EVFVLAEDENVRK--KVLRSGA-NFVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSC--GG--GEEEEESCTTHHH--HHHHTTC-EEEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHc--CC--CCEEEEcchHHHH--HHHhcCc-ccccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            6999999 999999998874  33  5788888773222  2222221 11221  12232    133688999999731


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEec-CCCC
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVN  141 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~t-NP~~  141 (332)
                      -         |  ..|+.    ++..+++.+|+..++..+ +|-.
T Consensus        72 ~---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          72 S---------D--SETIH----CILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             S---------H--HHHHH----HHHHHHHHCSSSCEEEECSSGGG
T ss_pred             c---------h--hhhHH----HHHHHHHHCCCceEEEEEcCHHH
Confidence            1         1  34443    344567788987665555 5543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.34  Score=37.79  Aligned_cols=97  Identities=14%  Similarity=0.144  Sum_probs=57.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhc------CCC
Q 020049           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL------TGM   89 (332)
Q Consensus        17 ~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~a   89 (332)
                      -.+..+|.|+||+|.+|...+..+...|.  +++..+.++. ...+.+   ... ..+-.. .+.|+.+.+      ++.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~---~Ga-~~vi~~-~~~~~~~~i~~~t~~~g~   98 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQ---NGA-HEVFNH-REVNYIDKIKKYVGEKGI   98 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH---TTC-SEEEET-TSTTHHHHHHHHHCTTCE
T ss_pred             CCCCCEEEEEeccccccccccccccccCc--ccccccccccccccccc---cCc-cccccc-ccccHHHHhhhhhccCCc
Confidence            34456899999889999999988888887  7777776542 222222   221 222222 234554443      458


Q ss_pred             cEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        90 DiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      |+|+.+.|                -+.+.+..+.+   .|.+.++.+.++
T Consensus        99 d~v~d~~g----------------~~~~~~~~~~l---~~~G~iv~~G~~  129 (174)
T d1yb5a2          99 DIIIEMLA----------------NVNLSKDLSLL---SHGGRVIVVGSR  129 (174)
T ss_dssp             EEEEESCH----------------HHHHHHHHHHE---EEEEEEEECCCC
T ss_pred             eEEeeccc----------------HHHHHHHHhcc---CCCCEEEEEecC
Confidence            99998853                11233333333   477888887544

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=91.98  E-value=0.58  Score=36.61  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=46.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCC-HHhhc-----CCCc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMD   90 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aD   90 (332)
                      ++..+|+|+|+ |.+|...+..+...|. .+|+.+|.++ ....+.++.-    ..+.......+ .++..     .++|
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa----~~~i~~~~~d~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGGVD   99 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCC----cEEEcCCCchhHHHHHHHHhcCCCCc
Confidence            33468999998 9999999988887774 3899999987 3344444321    11111111111 22222     4799


Q ss_pred             EEEEcCC
Q 020049           91 LVIIPAG   97 (332)
Q Consensus        91 iVi~~~g   97 (332)
                      +||.+.|
T Consensus       100 ~vid~~g  106 (174)
T d1p0fa2         100 YAVECAG  106 (174)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCC
Confidence            9999975

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.90  E-value=0.053  Score=46.85  Aligned_cols=33  Identities=21%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .+|+|||| |..|.++|..|++.|.  +|.++|.+.
T Consensus         2 ~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             ccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            47999999 9999999999998887  899999876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.80  E-value=0.092  Score=39.37  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.+++|||| |.+|.-+|..+...|.  ++.+++..+
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            3579999999 9999999999988887  999998755

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.77  E-value=0.069  Score=44.09  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +++.|+||++.+|..+|..|++.|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3688999999999999999999998  999999876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.65  E-value=0.4  Score=37.13  Aligned_cols=77  Identities=17%  Similarity=0.145  Sum_probs=47.6

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhc------CC
Q 020049           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL------TG   88 (332)
Q Consensus        16 ~~~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~   88 (332)
                      +-.+..+|+|+|++|.+|...+..+...+. .+|+..|.++ ....+.++.   . ..+-. ....|+.+.+      ++
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a-~~~i~-~~~~~~~~~~~~~~~~~~   97 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---A-DYVIN-ASMQDPLAEIRRITESKG   97 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---C-SEEEE-TTTSCHHHHHHHHTTTSC
T ss_pred             CCCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---C-ceeec-cCCcCHHHHHHHHhhccc
Confidence            334446899999779999988887776664 3899999876 233333332   1 11111 1223433332      46


Q ss_pred             CcEEEEcCCC
Q 020049           89 MDLVIIPAGV   98 (332)
Q Consensus        89 aDiVi~~~g~   98 (332)
                      .|+|+.+.|.
T Consensus        98 ~d~vid~~g~  107 (170)
T d1jvba2          98 VDAVIDLNNS  107 (170)
T ss_dssp             EEEEEESCCC
T ss_pred             chhhhccccc
Confidence            9999998753

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.56  E-value=0.13  Score=40.50  Aligned_cols=73  Identities=21%  Similarity=0.267  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      +..+|.|.||+|.+|+..+..++..|.  +++..+.++ ....+.++   .. ..+..+....+....-+++|+|+-+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~l---Ga-~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLAL---GA-EEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHT---TC-SEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccc---cc-ceeeehhhhhhhhhccccccccccccc
Confidence            446899999889999999988888887  788887765 22333332   11 222222110111234578999999864

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=91.56  E-value=0.19  Score=38.91  Aligned_cols=70  Identities=13%  Similarity=0.070  Sum_probs=42.8

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~--vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ..||+++|=..+  |..+++..+...|.  +++++=..+....-.++.+. ....+..+   +|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~~---~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKEV---ENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEEE---SCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEEE---eCHHHHhhcCCeEEEe
Confidence            469999998333  78888888887776  55544333311000111111 13455543   4778999999988876

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=91.52  E-value=0.23  Score=40.44  Aligned_cols=65  Identities=25%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhc-CCCcEEEEc
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIP   95 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVi~~   95 (332)
                      -+.++|+|-|- |+||+.+|..|...|.  .|+..|++. ......   ...  .  ...    +.++.+ .+||+++-+
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~~~~~~~~---~~g--~--~~~----~~~~~~~~~~DI~iPc   90 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDTERVAHAV---ALG--H--TAV----ALEDVLSTPCDVFAPC   90 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH---HTT--C--EEC----CGGGGGGCCCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchHHHHHHHH---hhc--c--ccc----Cccccccccceeeecc
Confidence            45679999999 9999999999999887  899999975 111111   111  1  111    123444 589998887


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      |
T Consensus        91 A   91 (201)
T d1c1da1          91 A   91 (201)
T ss_dssp             S
T ss_pred             c
Confidence            6

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.51  E-value=0.075  Score=48.61  Aligned_cols=34  Identities=29%  Similarity=0.534  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||.|||+ |.+|+.++..|+..|.. +|.|+|-+.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gvg-~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGFR-QIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTCC-CEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCCC-eEEEEECCC
Confidence            48999999 99999999999999874 899999875

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.49  E-value=0.095  Score=42.71  Aligned_cols=89  Identities=18%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEccCCcHHHHHHHhcCCCCCeEEE---------------------EeCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRG---------------------FLGQ   79 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~---------------------~~~~   79 (332)
                      +|.|||- |..|.+++..+...++ ..+++.+|.+.     .+|.......++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6899999 9999999999888764 35889999876     11222211111110                     0001


Q ss_pred             CCHHhhcCCCcEEEEcCCCCCCCCCChhhhHhhhHHHHHHHHHH
Q 020049           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG  123 (332)
Q Consensus        80 ~d~~~a~~~aDiVi~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~  123 (332)
                      ....+.++++|+||++||.....|       ..=.|++-+++++
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake  113 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKE  113 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHH
Confidence            124577899999999988764322       2225555555544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.48  E-value=0.35  Score=37.76  Aligned_cols=72  Identities=17%  Similarity=0.077  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCCHHhhc------CCCcE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL   91 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aDi   91 (332)
                      +..+|.|+||+|.+|...++.+...|.  +++..|.++. ...+.++.   . ..+-.. .+.|+.+.+      ++.|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a-~~vi~~-~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---A-WQVINY-REEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---C-SEEEET-TTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---C-eEEEEC-CCCCHHHHHHHHhCCCCeEE
Confidence            345899999988899999988888787  8999998762 33333332   1 222222 245665544      46799


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      |+.+.|
T Consensus       101 v~d~~g  106 (179)
T d1qora2         101 VYDSVG  106 (179)
T ss_dssp             EEECSC
T ss_pred             EEeCcc
Confidence            888864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.45  E-value=0.075  Score=39.63  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|.+++|||| |.+|.-+|..+...|.  +|.++...+
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            4679999999 9999999999998887  999998765

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=91.31  E-value=0.33  Score=38.61  Aligned_cols=72  Identities=13%  Similarity=0.234  Sum_probs=46.9

Q ss_pred             CCCeEEEEcCC-CchHHHHHHHHHhCCCCcEEEEEccCC---cHH---HHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcE
Q 020049           19 AGFKVAILGAA-GGIGQPLAMLMKINPLVSVLHLYDVVN---TPG---VTADISHMDTGAVVRGFLGQPQLENALTGMDL   91 (332)
Q Consensus        19 ~~~kI~IiGa~-G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~---~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (332)
                      +..||+++|=. ..|..+++..+...|.  +|+++-..+   ...   .+.+..... ...+..   +.|.+++++++|+
T Consensus         4 ~~l~i~~vGD~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~~-g~~~~~---~~d~~~a~~~aDv   77 (183)
T d1duvg2           4 NEMTLVYAGDARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQN-GGNITL---TEDVAKGVEGADF   77 (183)
T ss_dssp             GGCEEEEESCTTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHHT-TCEEEE---ESCHHHHHTTCSE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHhc-CCceEE---EechhhccccCCE
Confidence            35799999951 2577888777776676  999997754   111   222222211 244554   3578899999999


Q ss_pred             EEEcC
Q 020049           92 VIIPA   96 (332)
Q Consensus        92 Vi~~~   96 (332)
                      |..+.
T Consensus        78 vyt~~   82 (183)
T d1duvg2          78 IYTDV   82 (183)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            98874

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.27  E-value=0.3  Score=37.68  Aligned_cols=62  Identities=13%  Similarity=0.183  Sum_probs=43.1

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa--~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      .+||+++|=  .+.|..+++..+..-|.  ++++....+.       ...  ...+..+   .++++++++||+|..+
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~--~~~~~~~---~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDE--ENTFGTY---VSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hcc--ccceeEE---EechhccccCceeeee
Confidence            479999997  45688898888887776  7888776431       111  1123332   3568999999999876

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.76  E-value=0.055  Score=40.75  Aligned_cols=36  Identities=22%  Similarity=0.367  Sum_probs=27.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.+|+|+|| |..|..++..+....-..-+.++|.++
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            348999999 999999987665443334678999876

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.69  E-value=0.93  Score=33.74  Aligned_cols=85  Identities=15%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           19 AGFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        19 ~~~kI~IiGa~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      +|+.|+|||||   +..|..+...|...+ ..+|+.+......     +.      .+..+   .++.+.=...|+++++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~-----i~------G~~~y---~sl~dlp~~vDlvvi~   71 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEE-----VQ------GVKAY---KSVKDIPDEIDLAIIV   71 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSE-----ET------TEECB---SSTTSCSSCCSEEEEC
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCccc-----cC------CeEee---cchhhcCCCCceEEEe
Confidence            56789999997   788888888876654 4589999765310     10      11211   2333323468999988


Q ss_pred             CCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEE
Q 020049           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (332)
Q Consensus        96 ~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~vi  134 (332)
                      .  |              .+.+.++.+++.+..-.+.++
T Consensus        72 v--p--------------~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          72 V--P--------------KRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             S--C--------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred             c--C--------------hHHhHHHHHHHHHcCCCEEEE
Confidence            4  1              444556666666666555444

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.69  E-value=0.096  Score=43.20  Aligned_cols=32  Identities=25%  Similarity=0.217  Sum_probs=29.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      -|+|||| |..|...|..|++.|+  +|.|+|.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999998  999999876

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.50  E-value=0.9  Score=35.14  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..|.|+|+ |.+|...+..+...+.. .++..|.++
T Consensus        34 ~~vli~Ga-G~vG~~~~~~a~~~g~~-~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGV-GGLGHIAVQLLKVMTPA-TVIALDVKE   67 (172)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCCC-EEEEEESSH
T ss_pred             CEEEEeCC-ChHHHHHHHHHHhhcCc-ccccccchh
Confidence            48999998 99999988877766642 788889876

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.01  E-value=0.12  Score=44.64  Aligned_cols=33  Identities=18%  Similarity=0.209  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..|+|||| |..|...|..|.+.|+  +++++|..+
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            47999999 9999999999999888  899999876

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.97  E-value=0.66  Score=43.20  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .||+|+|+ |.+|+.++..|+..|. .++.++|-+.
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            48999999 9999999999999886 4899999764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.92  E-value=0.73  Score=35.80  Aligned_cols=74  Identities=16%  Similarity=0.201  Sum_probs=44.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCc-HHHHHHHhcCCCCCeEEEEeCCCC-HHh-----hcCCCcEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQ-LEN-----ALTGMDLV   92 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d-~~~-----a~~~aDiV   92 (332)
                      ..+|+|+|+ |.+|...+..++..+. .+|+..|.++. ...+.++..    ..........+ ..+     .-.++|+|
T Consensus        29 GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~G~D~v  102 (176)
T d2jhfa2          29 GSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKEVGA----TECVNPQDYKKPIQEVLTEMSNGGVDFS  102 (176)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHHHHHHHHHhCC----eeEEecCCchhHHHHHHHHHhcCCCCEE
Confidence            358999999 8899998888887764 28999999873 333333321    11111111111 111     11579999


Q ss_pred             EEcCCCC
Q 020049           93 IIPAGVP   99 (332)
Q Consensus        93 i~~~g~~   99 (332)
                      |.+.|.+
T Consensus       103 id~~G~~  109 (176)
T d2jhfa2         103 FEVIGRL  109 (176)
T ss_dssp             EECSCCH
T ss_pred             EecCCch
Confidence            9997643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.79  E-value=0.12  Score=44.24  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |+|||| |..|.+.|..|++.|+  +|.++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            899999 9999999999999998  899999754

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=89.71  E-value=0.43  Score=39.40  Aligned_cols=70  Identities=13%  Similarity=0.260  Sum_probs=39.9

Q ss_pred             CCCCeEEEEcCCCc----hHHHHHHHHHhCCCCcEEE-EEccCCcHH--HHHHHhcCCCCCeEEEEeCCCCHHhhc--CC
Q 020049           18 AAGFKVAILGAAGG----IGQPLAMLMKINPLVSVLH-LYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENAL--TG   88 (332)
Q Consensus        18 ~~~~kI~IiGa~G~----vG~~~a~~l~~~~~~~ei~-L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~   88 (332)
                      .+++||+|||+ |.    ++......+.......+|+ ++|.+....  ....+   . ......+   .++++.+  .+
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~---~-~~~~~~~---~~~~~l~~~~~   85 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL---Q-LKHATGF---DSLESFAQYKD   85 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT---T-CTTCEEE---SCHHHHHHCTT
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc---c-cccceee---cchhhcccccc
Confidence            56789999998 76    4445555665543223666 789875222  22221   1 1222333   3566666  46


Q ss_pred             CcEEEEc
Q 020049           89 MDLVIIP   95 (332)
Q Consensus        89 aDiVi~~   95 (332)
                      .|+|+++
T Consensus        86 iD~V~i~   92 (237)
T d2nvwa1          86 IDMIVVS   92 (237)
T ss_dssp             CSEEEEC
T ss_pred             cceeecc
Confidence            7788887

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.61  E-value=0.15  Score=39.22  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=26.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ||+|||| |++|..+|..|.. +.  +|.+++...
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            8999999 9999999988864 44  899998643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.085  Score=41.96  Aligned_cols=32  Identities=28%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .+|+|||+ |..|...|..+++.+.  +++++|..
T Consensus         6 ~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           6 SKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            48999999 9999999999999888  88888854

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.26  E-value=0.25  Score=38.34  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      +.+|+|||| |.+|.-+|..|...+.-..|++++..
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            458999999 99999999999998875566666653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.96  E-value=0.2  Score=36.61  Aligned_cols=36  Identities=14%  Similarity=0.047  Sum_probs=28.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~   56 (332)
                      |.||+|||| |++|.-+|..+... ....+|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            579999999 99999999766543 2345999998765

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.61  E-value=0.24  Score=36.27  Aligned_cols=36  Identities=17%  Similarity=0.069  Sum_probs=28.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~-~~~ei~L~D~~~   56 (332)
                      |.+|+|||| |++|.-+|..+...+ ...+|.+++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            569999999 999999997665433 234899998765

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=88.44  E-value=4.7  Score=32.21  Aligned_cols=143  Identities=19%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             eEEEEcCCCchHHHH-----HHHHHhCCCCcEEEEEccCC-cHH---HHHHHhcCCCCCeEEEEeCCCCHHh--------
Q 020049           22 KVAILGAAGGIGQPL-----AMLMKINPLVSVLHLYDVVN-TPG---VTADISHMDTGAVVRGFLGQPQLEN--------   84 (332)
Q Consensus        22 kI~IiGa~G~vG~~~-----a~~l~~~~~~~ei~L~D~~~-~~~---~~~dl~~~~~~~~v~~~~~~~d~~~--------   84 (332)
                      -|.++|- ..+|-+.     |..+...+.  .+.++..+. .-+   +..-+.+.. ...+.......++.+        
T Consensus        12 vi~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l-~v~~~~~~~~~~~~~~~~~~~~~   87 (207)
T d1ls1a2          12 LWFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDGESPESIRRRVEEK   87 (207)
T ss_dssp             EEEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHhc-CCccccccccchhhHHHHHHHHH
Confidence            3677999 6688653     234445555  778888776 211   111122211 122332222234332        


Q ss_pred             -hcCCCcEEEE-cCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEe--cCCCCchHHHHHHHHHHhCCCCCC
Q 020049           85 -ALTGMDLVII-PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTYDPK  160 (332)
Q Consensus        85 -a~~~aDiVi~-~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~--tNP~~~~t~~~~~~~~~~~~~~~~  160 (332)
                       .+.++|+|++ |+|...           .+...+.++.+..+...|+-++++.  +.+-+.+..  .+.+.+..++  .
T Consensus        88 ~~~~~~d~vlIDTaGr~~-----------~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~--~~~f~~~~~~--~  152 (207)
T d1ls1a2          88 ARLEARDLILVDTAGRLQ-----------IDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSV--ARAFDEKVGV--T  152 (207)
T ss_dssp             HHHHTCCEEEEECCCCSS-----------CCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHH--HHHHHHHTCC--C
T ss_pred             HhhccCcceeecccccch-----------hhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHH--HHHHHhhCCC--C
Confidence             2589999999 676442           2233444554444445677655555  344334422  1223333332  2


Q ss_pred             ceEEeehhhHH-HHHHHH--HHHhCCC
Q 020049          161 KLLGVTMLDVV-RANTFV--AEVLGLD  184 (332)
Q Consensus       161 kviG~~~ld~~-r~~~~l--a~~l~v~  184 (332)
                      . +=+|.+|+. |+-..+  +...+++
T Consensus       153 ~-~I~TKlDe~~~~G~~l~~~~~~~~P  178 (207)
T d1ls1a2         153 G-LVLTKLDGDARGGAALSARHVTGKP  178 (207)
T ss_dssp             E-EEEECGGGCSSCHHHHHHHHHHCCC
T ss_pred             e-eEEeecCccccchHHHHHHHHHCCC
Confidence            2 233666663 322333  3555655

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.24  E-value=0.19  Score=41.77  Aligned_cols=32  Identities=22%  Similarity=0.222  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|+|||| |..|...|..|++.|.  +|.++|.+.
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            6999999 9999999999999998  899999876

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.21  E-value=0.19  Score=38.93  Aligned_cols=38  Identities=24%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +|++|+|+|++|++|.+...-+.+.+-.-+|+.+-.+.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            35799999999999999888777764322777776555

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=88.12  E-value=0.33  Score=40.82  Aligned_cols=114  Identities=24%  Similarity=0.246  Sum_probs=70.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCCCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g~~   99 (332)
                      ..||++||-     ......+...+.  ++..+|.++..+            ..   . ...-++.+..||+||+|+   
T Consensus       122 g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~g------------d~---p-~~~~~~lLp~aD~viiTG---  175 (251)
T d2h1qa1         122 GKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEEG------------DY---P-LPASEFILPECDYVYITC---  175 (251)
T ss_dssp             TSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCTT------------CE---E-GGGHHHHGGGCSEEEEET---
T ss_pred             CCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCCC------------CC---C-chHHHHhhhcCCEEEEEe---
Confidence            359999987     245555666665  899999875211            11   1 223468899999999996   


Q ss_pred             CCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEeehhhHHHHHHHHHH
Q 020049          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE  179 (332)
Q Consensus       100 ~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~~~ld~~r~~~~la~  179 (332)
                                    ..++..-.+.+-++++++..+++.-|...+.+.   ++ + .|.  +.+=|+-..|..++.+.+++
T Consensus       176 --------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~---lf-~-~Gv--~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         176 --------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPV---LF-E-HGL--QELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             --------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGG---GG-G-TTC--SEEEEEEESCHHHHHHHHTT
T ss_pred             --------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHH---HH-h-cCC--ceEeEEEEeCHHHHHHHHHc
Confidence                          455556666667778777444444444444432   12 3 233  33444567788888877765


Q ss_pred             H
Q 020049          180 V  180 (332)
Q Consensus       180 ~  180 (332)
                      -
T Consensus       235 G  235 (251)
T d2h1qa1         235 A  235 (251)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.96  E-value=0.32  Score=36.90  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=25.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ||+|+||+|.||+.++..+...+-..=+..+|..+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~   35 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD   35 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            79999999999999998877654332234556543

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=87.87  E-value=0.21  Score=38.96  Aligned_cols=36  Identities=25%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             CCCeEEEEcCCCchHHHHH-HHHHhCCCCcEEEEE-ccCC
Q 020049           19 AGFKVAILGAAGGIGQPLA-MLMKINPLVSVLHLY-DVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a-~~l~~~~~~~ei~L~-D~~~   56 (332)
                      +++||+|||+ |.+|..+. ..|...+.. |++.+ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecch
Confidence            3579999997 99998754 454444444 66554 7765

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.82  E-value=0.19  Score=43.21  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=27.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHh-----CCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKI-----NPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~-----~~~~~ei~L~D~~~   56 (332)
                      -|+|||| |-+|.++|..|++     .|+  ++.++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            4999999 9999999999964     567  899999864

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.78  E-value=1.2  Score=34.36  Aligned_cols=73  Identities=15%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCH-Hhhc-----CCCcE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQL-ENAL-----TGMDL   91 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-~~a~-----~~aDi   91 (332)
                      +..+|+|+|+ |.+|...+..++..+. .+|+.+|.++ ....+.++.-    ..+.......+. ++..     .++|+
T Consensus        28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~~GA----d~~in~~~~~~~~~~~~~~~~~~G~d~  101 (175)
T d1cdoa2          28 PGSTCAVFGL-GAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKVFGA----TDFVNPNDHSEPISQVLSKMTNGGVDF  101 (175)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTC----CEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCEEEEEec-CCccchHHHHHHHHhh-chheeecchHHHHHHHHHcCC----cEEEcCCCcchhHHHHHHhhccCCcce
Confidence            3468999999 8888888777776554 3899999987 3334444431    111111111111 1111     58999


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      |+.+.|
T Consensus       102 vid~~G  107 (175)
T d1cdoa2         102 SLECVG  107 (175)
T ss_dssp             EEECSC
T ss_pred             eeeecC
Confidence            999975

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=87.76  E-value=2.9  Score=30.23  Aligned_cols=80  Identities=10%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcCC
Q 020049           21 FKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (332)
Q Consensus        21 ~kI~IiGa~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~g   97 (332)
                      ++|+|||||   +..|..+...|++.|+  +|+.+..+..     ++      ..+..+   .++.+.=...|++++.. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~-----~i------~G~~~y---~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD-----EI------EGLKCY---RSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EE------TTEECB---SSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc-----cc------cCcccc---ccchhccccceEEEEEe-
Confidence            379999986   4678888899999999  8888865420     01      112222   24433334569988873 


Q ss_pred             CCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcE
Q 020049           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT  132 (332)
Q Consensus        98 ~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~  132 (332)
                       |              .+.+.++.+++.+..+.++
T Consensus        65 -p--------------~~~~~~~l~~~~~~g~k~v   84 (116)
T d1y81a1          65 -P--------------PKVGLQVAKEAVEAGFKKL   84 (116)
T ss_dssp             -C--------------HHHHHHHHHHHHHTTCCEE
T ss_pred             -C--------------HHHHHHHHHHHHhcCCceE
Confidence             1              3444555555666666653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.60  E-value=1  Score=34.73  Aligned_cols=73  Identities=19%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCC-CCHHhhc-----CCCcE
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ-PQLENAL-----TGMDL   91 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~-~d~~~a~-----~~aDi   91 (332)
                      +..+|+|.|+ |.+|...++.++..+. ..|+..|.++ ....+.++.-.    .+.....+ .+..+.+     .++|+
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~----~~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGAT----ECINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCc----EEEeCCchhhHHHHHHHHHcCCCCcE
Confidence            3458999999 8899988888877664 2788888877 34455555421    11111111 1222222     67999


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      ||.+.|
T Consensus       102 vid~~G  107 (176)
T d2fzwa2         102 SFECIG  107 (176)
T ss_dssp             EEECSC
T ss_pred             eeecCC
Confidence            999975

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.46  E-value=0.18  Score=40.04  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .+|+|||| |..|...|..+++.+.  +++++|..
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            58999999 9999999999999888  78888854

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.23  Score=39.88  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=28.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      -|+|||| |..|...|..+.+.|.  ++.++|.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899999 9999999999999888  899999765

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=87.40  E-value=0.23  Score=38.91  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=26.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEcc
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~   54 (332)
                      +.||+|||+ |++|..+|..|.+.+.-..|+++..
T Consensus         3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            347999999 9999999999988776446666543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=86.89  E-value=0.48  Score=37.29  Aligned_cols=76  Identities=18%  Similarity=0.114  Sum_probs=43.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EccCCcHHHHHHHh-cCC---C-CCeEE-----EEeCCCCHHhhcCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADIS-HMD---T-GAVVR-----GFLGQPQLENALTG   88 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L-~D~~~~~~~~~dl~-~~~---~-~~~v~-----~~~~~~d~~~a~~~   88 (332)
                      +.||+|-|- |.+|..++..+...+.. +|+. -|..+......-+. +..   . .....     .+....++.+++.+
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~   78 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE   78 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcC
Confidence            358999999 99999999988777643 5554 44443222111111 111   0 00000     01112345677899


Q ss_pred             CcEEEEcCC
Q 020049           89 MDLVIIPAG   97 (332)
Q Consensus        89 aDiVi~~~g   97 (332)
                      +|+||.+-|
T Consensus        79 vDvViEcTG   87 (171)
T d1cf2o1          79 ADIVIDCTP   87 (171)
T ss_dssp             CSEEEECCS
T ss_pred             CCEEEEccC
Confidence            999999854

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=86.80  E-value=0.24  Score=41.72  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=28.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~-~~~~ei~L~D~~~   56 (332)
                      -|+|||| |..|...|..|++. |+  ++.++|..+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            4999999 99999999999864 88  999999865

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.77  E-value=0.26  Score=39.78  Aligned_cols=32  Identities=19%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      =|+|||| |..|.+.|..+++.|.  ++.++|..+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899999 9999999999999988  999999765

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.57  Score=36.50  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcC--CCCCeEEEEeCCCCHHhhcCCCcEE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHM--DTGAVVRGFLGQPQLENALTGMDLV   92 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~--~~~~~v~~~~~~~d~~~a~~~aDiV   92 (332)
                      .+..||+++|-...|..+++..+...|.  +++++-...   ......+....  .....+..   +.|+.+++++||+|
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~--~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~---~~d~~~~~~~advi   76 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGM--HLQAATPKGYEPDASVTKLAEQYAKENGTKLLL---TNDPLEAAHGGNVL   76 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE---ESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCC--EEEEEeccccCCchHHHHHHHHHHhccCCEEEE---EcCHHHHHhhhhhe
Confidence            3557999999822333333333333455  888887654   12211111111  01244554   34788999999999


Q ss_pred             EEcC
Q 020049           93 IIPA   96 (332)
Q Consensus        93 i~~~   96 (332)
                      +...
T Consensus        77 ~~~~   80 (170)
T d1otha2          77 ITDT   80 (170)
T ss_dssp             EECC
T ss_pred             eeec
Confidence            9874

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=86.35  E-value=3.3  Score=30.76  Aligned_cols=116  Identities=10%  Similarity=0.026  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCC---chHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           20 GFKVAILGAAG---GIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        20 ~~kI~IiGa~G---~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      ++.|+|||||-   ..|..++..|...|+  .++++-.+...            ..+.......++.+.=...|+|++..
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~------------~~i~g~~~~~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQG------------EELFGEEAVASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTT------------SEETTEECBSSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEecccc------------ceeeceecccchhhccCCCceEEEec
Confidence            35799999963   677888889999998  88888765310            01111111234433335679999883


Q ss_pred             CCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCCCCchHHHHHHHHHHhCCCCCCceEEe-e-hhhHHHH
Q 020049           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T-MLDVVRA  173 (332)
Q Consensus        97 g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~~~~~kviG~-~-~ld~~r~  173 (332)
                        |              .+.+.++.+++.+...+++++...--.+-+    .+.+++ .|+   ++++= | ..+..||
T Consensus        79 --p--------------~~~v~~~v~~~~~~g~k~i~~q~G~~~~e~----~~~a~~-~Gi---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 --P--------------PSALMDHLPEVLALRPGLVWLQSGIRHPEF----EKALKE-AGI---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             --C--------------HHHHTTTHHHHHHHCCSCEEECTTCCCHHH----HHHHHH-TTC---CEEESCCHHHHHHHH
T ss_pred             --c--------------HHHHHHHHHHHHhhCCCeEEEecCccCHHH----HHHHHH-cCC---EEEcCCccHHHHHHh
Confidence              1              333444555555566666544333222222    233333 454   67774 7 3444443

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.20  E-value=0.66  Score=36.69  Aligned_cols=65  Identities=25%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEcC
Q 020049           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (332)
Q Consensus        19 ~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~~   96 (332)
                      +.+||+|||= |+-|.+.|..|...|+  +|++ -..+ .......-.+.   -  ...    +.+||.+.||+|.+..
T Consensus        15 k~k~IaViGY-GsQG~AhAlNLrDSG~--~V~V-GLr~gs~s~~~A~~~G---f--~v~----~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTV-GLRSGSATVAKAEAHG---L--KVA----DVKTAVAAADVVMILT   80 (182)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEE-ECCTTCHHHHHHHHTT---C--EEE----CHHHHHHTCSEEEECS
T ss_pred             CCCEEEEEee-CcHhHHHHhhhhhcCC--CEEE-EcCCCCccHHHHhhhc---c--ccc----cHHHHhhhcCeeeeec
Confidence            3468999999 9999999999999998  5443 3333 22222111221   1  222    4589999999999983

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.89  E-value=1  Score=35.36  Aligned_cols=93  Identities=13%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhh-----cCCCcEEE
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENA-----LTGMDLVI   93 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-----~~~aDiVi   93 (332)
                      ..+|.|.||+|.||+...+.....|.  +++-...++ ....+.++..    ..+...  +++.++.     =++.|+|+
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~Ga--~Viat~~s~~k~~~~~~lGa----~~vi~~--~~~~~~~~~~~~~~gvD~vi  103 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKRGY--TVEASTGKAAEHDYLRVLGA----KEVLAR--EDVMAERIRPLDKQRWAAAV  103 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCTTCHHHHHHTTC----SEEEEC--C---------CCSCCEEEEE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHcCC--ceEEecCchHHHHHHHhccc----ceeeec--chhHHHHHHHhhccCcCEEE
Confidence            45799999999999999999888887  677776654 3334443321    111111  1111121     15789998


Q ss_pred             EcCCCCCCCCCChhhhHhhhHHHHHHHHHHHHhhCCCcEEEEecCC
Q 020049           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (332)
Q Consensus        94 ~~~g~~~~~g~~r~~~~~~n~~~~~~i~~~i~~~~p~a~viv~tNP  139 (332)
                      -+.|-.                   .+.+.++-..|++.++.+++.
T Consensus       104 d~vgg~-------------------~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         104 DPVGGR-------------------TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             ECSTTT-------------------THHHHHHTEEEEEEEEECSCC
T ss_pred             EcCCch-------------------hHHHHHHHhCCCceEEEeecc
Confidence            886422                   122334444588888887543

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=0.39  Score=36.11  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~--~~~~ei~L~D~~~   56 (332)
                      ..+|+|||| |++|.-+|..|...  ....+|.+++...
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            358999999 99999988877532  1233999998865

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=85.63  E-value=1.8  Score=33.62  Aligned_cols=74  Identities=15%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCCcHHHHHHHhcCCCCCeEEEEeCCCCHHhh------cCCCcE
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA------LTGMDL   91 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a------~~~aDi   91 (332)
                      ++...|.|.||+|.+|+..+...+..|.  +++..+.++.+  ...+..... ..+-.. .+.++.+.      -+++|+
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~~~--~~~~~~~Ga-~~vi~~-~~~~~~~~~~~~~~~~Gvd~  101 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEK--IAYLKQIGF-DAAFNY-KTVNSLEEALKKASPDGYDC  101 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHH--HHHHHHTTC-SEEEET-TSCSCHHHHHHHHCTTCEEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCHHH--HHHHHhhhh-hhhccc-ccccHHHHHHHHhhcCCCce
Confidence            3446899999989999999999998887  88888765422  121222221 222221 12232222      267999


Q ss_pred             EEEcCC
Q 020049           92 VIIPAG   97 (332)
Q Consensus        92 Vi~~~g   97 (332)
                      |+-+.|
T Consensus       102 v~D~vG  107 (182)
T d1v3va2         102 YFDNVG  107 (182)
T ss_dssp             EEESSC
T ss_pred             eEEecC
Confidence            999864

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=85.38  E-value=4.2  Score=32.96  Aligned_cols=69  Identities=13%  Similarity=0.012  Sum_probs=40.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEE-EEEccCC-cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPL----VSVL-HLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~----~~ei-~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      +||+|||= |+-|.+.|..|...|+    .-.| +-+.... ....+.  .+..-.......    +.+||.+.||+|.+
T Consensus        45 KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~~v~----~v~EAv~~ADiVmi  117 (226)
T d1qmga2          45 KQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENGTLG----DMWETISGSDLVLL  117 (226)
T ss_dssp             SEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGTCEE----EHHHHHHTCSEEEE
T ss_pred             CEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCCccc----CHHHHHhhCCEEEE
Confidence            58999999 9999999999998542    0122 2222221 223332  222101111111    24789999999999


Q ss_pred             cC
Q 020049           95 PA   96 (332)
Q Consensus        95 ~~   96 (332)
                      +.
T Consensus       118 Ll  119 (226)
T d1qmga2         118 LI  119 (226)
T ss_dssp             CS
T ss_pred             ec
Confidence            83

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.18  E-value=0.36  Score=37.47  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      -|+|||| |..|...|..+.+.|.  ++.++|.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            4899999 9999999999999888  88888853

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.15  E-value=0.28  Score=39.39  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=28.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      =|+|||| |..|.+.|..+++.|.  +++++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899999 9999999999999888  899999764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.01  E-value=0.34  Score=41.09  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      -|+|||+ |..|...|..|++.|.  +|+|+|...
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            4999999 9999999999999998  899999865

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.92  E-value=1.2  Score=34.04  Aligned_cols=69  Identities=20%  Similarity=0.333  Sum_probs=46.3

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEccCC---cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEE
Q 020049           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (332)
Q Consensus        20 ~~kI~IiGa~--G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~   94 (332)
                      ..||+++|=.  +.|..+++..+...|.  +++++-...   .......+...  ...+..   +.|+++++++||+|..
T Consensus         4 gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~--~~~~~~---~~d~~~av~~aDvvy~   76 (157)
T d1ml4a2           4 GLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREK--GMKVVE---TTTLEDVIGKLDVLYV   76 (157)
T ss_dssp             SEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHT--TCCEEE---ESCTHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhh--ccccee---ecCHHHhhccCcEEEe
Confidence            4699999983  4678888888877776  888887654   22222323322  234443   2477899999998887


Q ss_pred             c
Q 020049           95 P   95 (332)
Q Consensus        95 ~   95 (332)
                      +
T Consensus        77 ~   77 (157)
T d1ml4a2          77 T   77 (157)
T ss_dssp             C
T ss_pred             e
Confidence            6

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.70  E-value=0.35  Score=43.01  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=28.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHh------CCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~------~~~~~ei~L~D~~~   56 (332)
                      =|+|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            4999999 9999999999986      677  999999864

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.85  E-value=0.4  Score=38.87  Aligned_cols=31  Identities=23%  Similarity=0.216  Sum_probs=28.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      =|+|||| |..|.+.|..+++.|.  ++.++|..
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~--kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFV   35 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCC--CEEEECCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEecc
Confidence            3899999 9999999999999998  99999954

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.75  E-value=0.44  Score=38.62  Aligned_cols=32  Identities=22%  Similarity=0.266  Sum_probs=29.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      =|+|||| |..|.+.|..+.+.+.  ++.++|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4899999 9999999999999998  999999765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.51  E-value=0.48  Score=38.32  Aligned_cols=33  Identities=9%  Similarity=0.064  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      .++|||| |+.|..+|..|.+.++..+|++++..
T Consensus         6 ~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           6 PFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            5899999 99999999999888876789999864

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.8  Score=30.95  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=28.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        20 ~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      ..+|.|.||+|.||+...+.++..|.  +|+..-..+
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~--~Vi~~t~s~   66 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGRE   66 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCG
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCC--eEEEEECCH
Confidence            45899999999999999998888887  777665544

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.06  E-value=0.65  Score=39.13  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           19 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        19 ~~~kI~IiGa~G--~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +.+++.|+||+|  .+|..+|..|++.|.  +|++.|.+.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            346899999965  699999999999998  999998765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=82.71  E-value=0.42  Score=38.48  Aligned_cols=32  Identities=19%  Similarity=0.102  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .|+|||| |..|...|..+++.|.  ++.|+|.+.
T Consensus         7 DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           7 TLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            5999999 9999999999999898  999999765

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.7  Score=35.58  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=27.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      +||+|+|++|++|.+...-+.+.+---+|+.+--+.
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            479999999999999888777765322666665544

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.85  E-value=0.6  Score=37.29  Aligned_cols=31  Identities=13%  Similarity=0.029  Sum_probs=28.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        23 I~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      |+|||| |..|...|..+++.|.  ++.++|...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            899999 9999999999999998  899999765

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.51  E-value=0.45  Score=37.97  Aligned_cols=31  Identities=26%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      =|+|||| |..|.+.|..+++.|.  ++.++|..
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~   35 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKY   35 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEecc
Confidence            4899999 9999999999999998  89999964

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=81.43  E-value=1.8  Score=33.12  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=43.8

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEccCC--cHHHHHHHhcCCCCCeEEEEeCCCCHHhhcCCCcEEEEc
Q 020049           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (332)
Q Consensus        20 ~~kI~IiGa~G~--vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVi~~   95 (332)
                      ..||+++|=..+  |..+++..+...+. ..+++.-...  ......+..+.. ...+..   +.|+++++++||+|..+
T Consensus         4 gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~~   78 (160)
T d1ekxa2           4 NLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYMT   78 (160)
T ss_dssp             SCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEEC
T ss_pred             CCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEee
Confidence            469999997333  77777777665543 2667766543  222223333222 234444   35778999999999876


Q ss_pred             C
Q 020049           96 A   96 (332)
Q Consensus        96 ~   96 (332)
                      -
T Consensus        79 ~   79 (160)
T d1ekxa2          79 R   79 (160)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.07  E-value=0.59  Score=39.92  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        21 ~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      .=|+|||+ |..|.+.|..|++.|.  +|+|++...
T Consensus        24 ~DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             CSEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             ceEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            45999999 9999999999999998  899999765

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.45  E-value=0.72  Score=36.68  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=28.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccCC
Q 020049           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (332)
Q Consensus        22 kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~~   56 (332)
                      -|+|||| |..|.+.|..+++.|.  +++++|...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4899999 9999999999999888  899998765

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.12  E-value=0.23  Score=38.89  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=25.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEccC
Q 020049           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (332)
Q Consensus        18 ~~~~kI~IiGa~G~vG~~~a~~l~~~~~~~ei~L~D~~   55 (332)
                      ..++||+|||+ |.+|...+..+...+....+.++|..
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            35679999999 99999988877654322234555543