Query 020050
Match_columns 332
No_of_seqs 187 out of 1468
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3E-105 6E-110 764.8 24.5 297 25-327 22-324 (324)
2 cd00693 secretory_peroxidase H 100.0 3.6E-98 8E-103 713.6 24.5 294 27-326 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 8.1E-71 1.8E-75 509.0 12.1 229 44-291 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 2.4E-68 5.2E-73 503.6 20.9 232 42-325 15-258 (289)
5 cd00691 ascorbate_peroxidase A 100.0 3.1E-65 6.8E-70 477.1 20.1 227 39-313 11-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 2.1E-64 4.6E-69 470.1 20.9 230 30-311 3-247 (250)
7 cd00692 ligninase Ligninase an 100.0 3.6E-63 7.9E-68 476.0 20.8 236 40-328 16-288 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 8.9E-63 1.9E-67 458.6 20.0 220 41-312 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 5.3E-59 1.1E-63 435.9 18.0 223 43-308 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 5.7E-57 1.2E-61 439.8 18.6 257 42-317 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 1.7E-54 3.6E-59 446.4 18.7 258 42-317 55-408 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4.8E-51 1E-55 418.7 18.6 257 42-317 57-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.4E-51 5.3E-56 381.8 10.4 220 44-308 27-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 1.4E-40 2.9E-45 313.4 17.7 220 46-310 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 2.2E-35 4.7E-40 304.9 16.8 220 44-311 430-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 9.7E-35 2.1E-39 298.7 17.4 220 46-311 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.2E-32 2.6E-37 272.0 15.6 252 42-310 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.6 3.1E-15 6.8E-20 149.1 13.6 216 46-310 452-725 (730)
19 PTZ00411 transaldolase-like pr 63.5 82 0.0018 31.1 10.7 47 135-181 180-230 (333)
20 COG3763 Uncharacterized protei 60.1 8.5 0.00018 29.4 2.5 30 43-72 24-53 (71)
21 PF11895 DUF3415: Domain of un 51.5 13 0.00029 29.1 2.4 18 294-311 2-19 (80)
22 PRK12309 transaldolase/EF-hand 46.8 1.6E+02 0.0034 29.8 9.8 48 135-182 174-225 (391)
23 PRK00523 hypothetical protein; 43.1 37 0.00081 26.1 3.6 35 28-71 19-53 (72)
24 PRK01844 hypothetical protein; 40.2 24 0.00052 27.1 2.2 35 28-71 18-52 (72)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.7e-105 Score=764.82 Aligned_cols=297 Identities=49% Similarity=0.830 Sum_probs=282.4
Q ss_pred CCCCCcCcccCCChhHHHHHHHHHHHHHHhchhhhHHHHHHHhhcccccCCCcccccCCCcccccccCCCCchhHHHHHH
Q 020050 25 KSQLSTNFYSKTCPNVLQIVRREVQKAIKVEMRMAASLIRLHFHDCFVNGCDASVLLDGSDSEKFAAPNRNSARGFEVID 104 (332)
Q Consensus 25 ~~~l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~~~~E~~~~~N~~~~~g~~~I~ 104 (332)
+++|+++||++|||++|+||++.|++++.++++++|++|||+||||||+||||||||++...||++++|. +++||++|+
T Consensus 22 ~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~-~l~Gf~~i~ 100 (324)
T PLN03030 22 GQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNL-LLRGYDVID 100 (324)
T ss_pred hccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCc-CcchHHHHH
Confidence 3679999999999999999999999999999999999999999999999999999998767899999998 689999999
Q ss_pred HHHHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCCCCCCCCCCHHHHHHHHHHcCCCcccc
Q 020050 105 AIKTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNITDL 184 (332)
Q Consensus 105 ~iK~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~ 184 (332)
.||+++|++||++||||||||+||||||+++|||.|+|++||||+++|...++.+||.|+.++++|++.|+++||+.+||
T Consensus 101 ~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~Dl 180 (324)
T PLN03030 101 DAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNTQDL 180 (324)
T ss_pred HHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCHHHh
Confidence 99999999999999999999999999999999999999999999999876544489999999999999999999999999
Q ss_pred ccccCccceecccccccccccccCCCCCC-CCCCCCCHHHHHHHHhhcC-CCCCCCCCCCCCCCccccchHHHHHHhhcc
Q 020050 185 VSLSGGAHTIGLAKCAFFSNRLSNFSGTG-APDATMDTSLVSELRSLCA-NGDGNNTAPLDRNSIDLFDNHYFQNLINNK 262 (332)
Q Consensus 185 VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~-~~dp~~d~~~~~~L~~~Cp-~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~ 262 (332)
|+||| |||||++||.+|.+|||||.+++ .+||+||++|+..|++.|| +++..+.+++|+.||.+|||+||++|+.++
T Consensus 181 VaLsG-AHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nll~~r 259 (324)
T PLN03030 181 VTLVG-GHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNLKNGR 259 (324)
T ss_pred eeeee-ccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHHHhcC
Confidence 99999 99999999999999999999875 5899999999999999999 333344688999999999999999999999
Q ss_pred ccccchhhhhcCCccchhHHHHHHHhhhCh----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccc
Q 020050 263 GLLSSDQILYSSDEAKSTTKSLVESYSSNS----NLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAVN 327 (332)
Q Consensus 263 gll~SD~~L~~d~~~~~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tG~~GeiR~~C~~~n 327 (332)
|+|+|||+|++|+ +|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 260 GlL~SDq~L~~d~----~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 260 GILESDQKLWTDA----STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred CCcCCchHhhcCc----cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 9999999999999 9999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.6e-98 Score=713.62 Aligned_cols=294 Identities=57% Similarity=0.968 Sum_probs=281.3
Q ss_pred CCCcCcccCCChhHHHHHHHHHHHHHHhchhhhHHHHHHHhhcccccCCCcccccCC---CcccccccCCCCchhHHHHH
Q 020050 27 QLSTNFYSKTCPNVLQIVRREVQKAIKVEMRMAASLIRLHFHDCFVNGCDASVLLDG---SDSEKFAAPNRNSARGFEVI 103 (332)
Q Consensus 27 ~l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~---~~~E~~~~~N~~~~~g~~~I 103 (332)
+|+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||++ +.+|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 589999999999999999999999999999999999999999999999999999985 56899999999 57999999
Q ss_pred HHHHHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCCCCCCCCCCHHHHHHHHHHcCCCccc
Q 020050 104 DAIKTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNITD 183 (332)
Q Consensus 104 ~~iK~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e 183 (332)
++||+++|+.||++||||||||||||+||+++|||.|+|++||+|+.+|.+..+..||.|+.+++++++.|+++||+++|
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~d 159 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVTD 159 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHHH
Confidence 99999999999999999999999999999999999999999999999877553338999999999999999999999999
Q ss_pred cccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcC-CCCCCCCCCCCCCCccccchHHHHHHhhcc
Q 020050 184 LVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCA-NGDGNNTAPLDRNSIDLFDNHYFQNLINNK 262 (332)
Q Consensus 184 ~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp-~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~ 262 (332)
||||+| |||||++||.+|.+|+|||+|++++||+||+.|+..|++.|| .++....+++|+.||.+|||+||++|+.++
T Consensus 160 ~VaL~G-aHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 160 LVALSG-AHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred heeecc-cceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 999999 999999999999999999999999999999999999999999 334556789999999999999999999999
Q ss_pred ccccchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 020050 263 GLLSSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRAV 326 (332)
Q Consensus 263 gll~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tG~~GeiR~~C~~~ 326 (332)
|+|+|||+|+.|+ +|+++|++||.|++.|+++|++||+||++|+|+||.+||||++|+++
T Consensus 239 glL~SD~~L~~d~----~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDP----RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCc----cHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999 99999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=8.1e-71 Score=509.03 Aligned_cols=229 Identities=52% Similarity=0.883 Sum_probs=208.5
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHhhcccc-cCCCcccccCCCcccccccCCCCchhHHHHHHHHHHHHHhhCCCCcchhH
Q 020050 44 VRREVQKAIKVEMRMAASLIRLHFHDCFV-NGCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVERQCSGVVSCAD 122 (332)
Q Consensus 44 V~~~v~~~~~~~~~~a~~llRL~FHDc~v-~GcDgSill~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~cp~~VScAD 122 (332)
||++|++++.++++++|+||||+|||||+ +|||||||+ +..|+++++|.++.+++++|++||+++|++||++|||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~--~~~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~AD 78 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILL--FSAEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCAD 78 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGG--STTGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceec--cccccccccccCcceeeechhhHHhhhcccccCCCCHHH
Confidence 79999999999999999999999999999 999999999 578999999997656999999999999999999999999
Q ss_pred HHHHhhhhhccccCCCcceeecCCCCCCCccccCCCCCCCCCCCHHHHHHHHHHcCCCccccccccCccceecccccccc
Q 020050 123 ILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNITDLVSLSGGAHTIGLAKCAFF 202 (332)
Q Consensus 123 ilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGgaHTiG~~hc~~f 202 (332)
||+|||++||+.+|||.|+|++||+|+.+++..++.+||.|..+++++++.|+++|||++|||||+| |||||++||.+|
T Consensus 79 iialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsG-aHTiG~~~c~~f 157 (230)
T PF00141_consen 79 IIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSG-AHTIGRAHCSSF 157 (230)
T ss_dssp HHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHG-GGGSTEESGGCT
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceec-ccccccceeccc
Confidence 9999999999999999999999999999998743336999999999999999999999999999999 999999999999
Q ss_pred cccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHhhccccccchhhhhcCCccchhHH
Q 020050 203 SNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLINNKGLLSSDQILYSSDEAKSTTK 282 (332)
Q Consensus 203 ~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~gll~SD~~L~~d~~~~~~t~ 282 (332)
. |+| + .+||+||+.|+.. .|+ .+....+++| ||.+|||+||++|++++|+|.||++|++|+ +|+
T Consensus 158 ~-rl~-~----~~dp~~d~~~~~~---~C~-~~~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~----~t~ 221 (230)
T PF00141_consen 158 S-RLY-F----PPDPTMDPGYAGQ---NCN-SGGDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP----ETR 221 (230)
T ss_dssp G-GTS-C----SSGTTSTHHHHHH---SSS-TSGCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST----THH
T ss_pred c-ccc-c----cccccccccccee---ccC-CCcccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH----HHH
Confidence 9 999 4 5799999999988 995 3333378898 999999999999999999999999999999 999
Q ss_pred HHHHHhhhC
Q 020050 283 SLVESYSSN 291 (332)
Q Consensus 283 ~~V~~yA~d 291 (332)
++|++||+|
T Consensus 222 ~~V~~yA~d 230 (230)
T PF00141_consen 222 PIVERYAQD 230 (230)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 999999976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=2.4e-68 Score=503.62 Aligned_cols=232 Identities=27% Similarity=0.433 Sum_probs=210.8
Q ss_pred HHHHHHHHHHHHhchhhhHHHHHHHhhccc-------ccCCCcccccCCCcccccccCCCCchhHHHHHHHHHHHHHhhC
Q 020050 42 QIVRREVQKAIKVEMRMAASLIRLHFHDCF-------VNGCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVERQC 114 (332)
Q Consensus 42 ~iV~~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~c 114 (332)
+.+++++ ..+.+++.++|.+|||+||||| ++||||||+++ +|+++++|.++.+|+++|++||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~---- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH---- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchHHHHHHHHHHHHHc----
Confidence 4566777 4477899999999999999999 89999999984 6999999996657999999999987
Q ss_pred CCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCC-CCCCCCCCHHHHHHHHHHcCCCccccccccCccce
Q 020050 115 SGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAAVGLNITDLVSLSGGAHT 193 (332)
Q Consensus 115 p~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGgaHT 193 (332)
++|||||||+||||+||+.+|||.|+|++||+|+++++ ++ +||.|+.+++++++.|+++||+++|||+|+| |||
T Consensus 87 -~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG-AHT 161 (289)
T PLN02608 87 -PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG-GHT 161 (289)
T ss_pred -CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc-ccc
Confidence 38999999999999999999999999999999999986 45 8999999999999999999999999999999 999
Q ss_pred ecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHhhc--ccc--ccchh
Q 020050 194 IGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLINN--KGL--LSSDQ 269 (332)
Q Consensus 194 iG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~--~gl--l~SD~ 269 (332)
||++||. |+ +|.| .| + .||.+|||+||++|+.+ +|+ |+||+
T Consensus 162 iG~ahc~----r~-g~~g------------------------~~-----~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~ 206 (289)
T PLN02608 162 LGRAHPE----RS-GFDG------------------------PW-----T-KEPLKFDNSYFVELLKGESEGLLKLPTDK 206 (289)
T ss_pred ccccccc----CC-CCCC------------------------CC-----C-CCCCccChHHHHHHHcCCcCCccccccCH
Confidence 9999994 55 4432 11 1 68999999999999998 788 79999
Q ss_pred hhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCcccccccc
Q 020050 270 ILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKNCRA 325 (332)
Q Consensus 270 ~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tG~~GeiR~~C~~ 325 (332)
+|+.|+ +|+++|+.||.|+++|+++|++||+||++|+|+||.+||+.+.-+-
T Consensus 207 ~L~~d~----~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~~ 258 (289)
T PLN02608 207 ALLEDP----EFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTST 258 (289)
T ss_pred hhhcCh----hHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCcc
Confidence 999999 9999999999999999999999999999999999999999886653
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=3.1e-65 Score=477.10 Aligned_cols=227 Identities=26% Similarity=0.392 Sum_probs=204.4
Q ss_pred hHHHHHHHHHHHHHHhchhhhHHHHHHHhhcccccCCCcccccCC------CcccccccCCCCchhHHHHHHHHHHHHHh
Q 020050 39 NVLQIVRREVQKAIKVEMRMAASLIRLHFHDCFVNGCDASVLLDG------SDSEKFAAPNRNSARGFEVIDAIKTAVER 112 (332)
Q Consensus 39 ~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~GcDgSill~~------~~~E~~~~~N~~~~~g~~~I~~iK~~le~ 112 (332)
..++||+++|++.+. +++++|++|||+|||||+ ||+|+++++ +.+|+++++|.++.+||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~-- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY-- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc--
Confidence 457899999999999 999999999999999984 555554432 246999999997669999999999986
Q ss_pred hCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCC-CCCCCCCCHHHHHHHHHHcCCCccccccccCcc
Q 020050 113 QCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAAVGLNITDLVSLSGGA 191 (332)
Q Consensus 113 ~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGga 191 (332)
| +||||||||||||+||+.+|||.|+|++||+|+.++....++ +||.|+.+++++++.|+++||+++|||+|+| |
T Consensus 86 --~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG-a 161 (253)
T cd00691 86 --P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG-A 161 (253)
T ss_pred --C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc-c
Confidence 4 899999999999999999999999999999999999877777 8999999999999999999999999999999 9
Q ss_pred ceecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHhhccc--------
Q 020050 192 HTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLINNKG-------- 263 (332)
Q Consensus 192 HTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~g-------- 263 (332)
||||++||.. ++|.| .+ ..||.+|||+||++|+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g------------------------~~------~~tp~~FDn~Yy~~ll~~~g~~~~~~~~ 206 (253)
T cd00691 162 HTLGRCHKER-----SGYDG------------------------PW------TKNPLKFDNSYFKELLEEDWKLPTPGLL 206 (253)
T ss_pred ceeecccccC-----CCCCC------------------------CC------CCCCCcccHHHHHHHhcCCCccCcCcce
Confidence 9999999953 23322 11 15899999999999999999
Q ss_pred cccchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCC
Q 020050 264 LLSSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVSPLT 313 (332)
Q Consensus 264 ll~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t 313 (332)
+|+||++|+.|+ +|+++|+.||.|+++|+++|++||+||++|+|..
T Consensus 207 ~L~sD~~L~~d~----~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 207 MLPTDKALLEDP----KFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred echhhHHHHcCc----cHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999 9999999999999999999999999999999863
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=2.1e-64 Score=470.05 Aligned_cols=230 Identities=30% Similarity=0.507 Sum_probs=207.6
Q ss_pred cCcccC--CChhHHHHHHHHHHHHHHhchhhhHHHHHHHhh-----ccccc--CCCcccccCCCcccccccCCCCchhHH
Q 020050 30 TNFYSK--TCPNVLQIVRREVQKAIKVEMRMAASLIRLHFH-----DCFVN--GCDASVLLDGSDSEKFAAPNRNSARGF 100 (332)
Q Consensus 30 ~~fY~~--sCp~~e~iV~~~v~~~~~~~~~~a~~llRL~FH-----Dc~v~--GcDgSill~~~~~E~~~~~N~~~~~g~ 100 (332)
.+||.. -|+.+++.|+..+++.+ .+++++|.||||+|| ||+++ ||||||.+ .+|+++++|.++.+||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~---~~E~~~~~N~gl~~~~ 78 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF---DAEQAHGANSGIHIAL 78 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc---cccccCCCccCHHHHH
Confidence 356653 38899999999999988 789999999999999 88776 99999976 4699999999766999
Q ss_pred HHHHHHHHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCC-CCCCCCCCHHHHHHHHHH-cC
Q 020050 101 EVIDAIKTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAA-VG 178 (332)
Q Consensus 101 ~~I~~iK~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~-~G 178 (332)
++|+.||+++ ++|||||||+||||+||+.+|||.|+|++||+|+++++ ++ +||.|+.++++|++.|++ +|
T Consensus 79 ~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~~~~G 150 (250)
T PLN02364 79 RLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDVFAKQMG 150 (250)
T ss_pred HHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHHHHHhcC
Confidence 9999999998 48999999999999999999999999999999999987 45 799999999999999997 59
Q ss_pred CCccccccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHH
Q 020050 179 LNITDLVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNL 258 (332)
Q Consensus 179 l~~~e~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~l 258 (332)
||++|||||+| |||||++|| .|+ +|.| .+ + .||.+|||+||++|
T Consensus 151 l~~~d~VaLsG-aHTiG~~hc----~r~-~~~g------------------------~~-----~-~tp~~fDn~Yy~~l 194 (250)
T PLN02364 151 LSDKDIVALSG-AHTLGRCHK----DRS-GFEG------------------------AW-----T-SNPLIFDNSYFKEL 194 (250)
T ss_pred CCHHHheeeec-ceeeccccC----CCC-CCCC------------------------CC-----C-CCCCccchHHHHHH
Confidence 99999999999 999999999 454 4432 11 1 68999999999999
Q ss_pred hhc--ccccc--chhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCCC
Q 020050 259 INN--KGLLS--SDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVSP 311 (332)
Q Consensus 259 l~~--~gll~--SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv 311 (332)
+.+ +|+|. ||++|+.|+ +|+.+|+.||.|+++|+++|++||+||++|++
T Consensus 195 l~~~~~gll~l~sD~~L~~d~----~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~ 247 (250)
T PLN02364 195 LSGEKEGLLQLVSDKALLDDP----VFRPLVEKYAADEDAFFADYAEAHMKLSELGF 247 (250)
T ss_pred hcCCcCCCccccchHHHccCc----hHHHHHHHHhhCHHHHHHHHHHHHHHHHccCC
Confidence 998 89875 999999999 99999999999999999999999999999986
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.6e-63 Score=476.01 Aligned_cols=236 Identities=25% Similarity=0.397 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHhch---hhhHHHHHHHhhcccc------------cCCCcccccCCCcccccccCCCCchhHHHHHH
Q 020050 40 VLQIVRREVQKAIKVEM---RMAASLIRLHFHDCFV------------NGCDASVLLDGSDSEKFAAPNRNSARGFEVID 104 (332)
Q Consensus 40 ~e~iV~~~v~~~~~~~~---~~a~~llRL~FHDc~v------------~GcDgSill~~~~~E~~~~~N~~~~~g~~~I~ 104 (332)
+|..|++++++.+.++. ..|+.+|||+||||++ +|||||||+++ ..|+++++|.+ ++ ++|+
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~-~~E~~~~~N~g-L~--~vvd 91 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFD-DIETAFHANIG-LD--EIVE 91 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCC-cccccCCCCCC-HH--HHHH
Confidence 48899999999998554 5678899999999996 89999999963 47999999985 44 8999
Q ss_pred HHHHHHHhhCCCCcchhHHHHHhhhhhcccc-CCCcceeecCCCCCCCccccCCC-CCCCCCCCHHHHHHHHHHcCCCcc
Q 020050 105 AIKTAVERQCSGVVSCADILAIAARDSVLLS-GGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAAVGLNIT 182 (332)
Q Consensus 105 ~iK~~le~~cp~~VScADilalAa~~aV~~~-GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~ 182 (332)
.||..+|++| |||||||+||||+||+.+ |||.|+|++||+|++++. ++ +||.|+.++++|++.|+++||+++
T Consensus 92 ~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~ 165 (328)
T cd00692 92 ALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAGFSPD 165 (328)
T ss_pred HHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHH
Confidence 9999999998 999999999999999965 999999999999999986 45 899999999999999999999999
Q ss_pred ccccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHh-hc
Q 020050 183 DLVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLI-NN 261 (332)
Q Consensus 183 e~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll-~~ 261 (332)
|||+|+| |||||++|. +||+++ .+++| .||.+|||+||++++ .+
T Consensus 166 E~VaLsG-AHTiG~a~~---------------~Dps~~------------------g~p~D-~TP~~FDn~Yf~~ll~~~ 210 (328)
T cd00692 166 ELVALLA-AHSVAAQDF---------------VDPSIA------------------GTPFD-STPGVFDTQFFIETLLKG 210 (328)
T ss_pred HHhhhcc-cccccccCC---------------CCCCCC------------------CCCCC-CCcchhcHHHHHHHHHcC
Confidence 9999999 999999982 366664 24678 599999999999987 45
Q ss_pred cc-------------------cccchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 020050 262 KG-------------------LLSSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVSPLTGTNGEIRKN 322 (332)
Q Consensus 262 ~g-------------------ll~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tG~~GeiR~~ 322 (332)
++ +|+||++|+.|+ +|+.+|++||.||++|+++|++||+||++|||. ...+..
T Consensus 211 ~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~----~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~d 282 (328)
T cd00692 211 TAFPGSGGNQGEVESPLPGEFRLQSDFLLARDP----RTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTD 282 (328)
T ss_pred CCCCCccccccccccCccccccccchHHHhcCC----cHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhcc
Confidence 55 499999999999 999999999999999999999999999999986 347889
Q ss_pred cccccc
Q 020050 323 CRAVNS 328 (332)
Q Consensus 323 C~~~n~ 328 (332)
|+.|+.
T Consensus 283 cs~v~p 288 (328)
T cd00692 283 CSDVIP 288 (328)
T ss_pred CcccCC
Confidence 999883
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=8.9e-63 Score=458.56 Aligned_cols=220 Identities=28% Similarity=0.467 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHhhcccc-------cCCCcccccCCCcccccccCCCCchhHHHHHHHHHHHHHhh
Q 020050 41 LQIVRREVQKAIKVEMRMAASLIRLHFHDCFV-------NGCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVERQ 113 (332)
Q Consensus 41 e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgSill~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~ 113 (332)
.+-+++.+.+.+ ++...+|.+|||+||||.+ |||||||.+ ..|+++++|.|+..++++|++||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf---~~E~~~~~N~gL~~~~~~i~~iK~~~--- 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH---PQELAHDANNGLDIAVRLLDPIKELF--- 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecC---hhhccCCCcCChHHHHHHHHHHHHHc---
Confidence 344577777766 4679999999999999974 899999987 46999999998766999999999987
Q ss_pred CCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCC-CCCCCCCCHHHHHHHHHHcCCCccccccccCccc
Q 020050 114 CSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGAN-ALPSPFEGLNILTAKFAAVGLNITDLVSLSGGAH 192 (332)
Q Consensus 114 cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGgaH 192 (332)
++|||||||+||||+||+.+|||.|+|++||+|+.++. ++ +||.|+.++++|++.|+++||+++|||||+| ||
T Consensus 90 --~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG-aH 163 (251)
T PLN02879 90 --PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSG-GH 163 (251)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeec-cc
Confidence 48999999999999999999999999999999999885 45 8999999999999999999999999999999 99
Q ss_pred eecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHhhc--ccc--ccch
Q 020050 193 TIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLINN--KGL--LSSD 268 (332)
Q Consensus 193 TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~--~gl--l~SD 268 (332)
|||++||. | ++|.| . .| .||.+|||+||++|+.+ +|+ |+||
T Consensus 164 TiG~ah~~----r-~g~~g------------------------~-----~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD 208 (251)
T PLN02879 164 TLGRCHKE----R-SGFEG------------------------A-----WT-PNPLIFDNSYFKEILSGEKEGLLQLPTD 208 (251)
T ss_pred cccccccc----c-ccCCC------------------------C-----CC-CCccceeHHHHHHHHcCCcCCCccchhh
Confidence 99999995 4 34432 1 23 58999999999999998 888 6799
Q ss_pred hhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCCCC
Q 020050 269 QILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVSPL 312 (332)
Q Consensus 269 ~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 312 (332)
++|+.|+ +|+++|++||.||++|+++|++||+||++||+.
T Consensus 209 ~aL~~D~----~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 209 KALLDDP----LFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHhcCC----cHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999 999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=5.3e-59 Score=435.91 Aligned_cols=223 Identities=33% Similarity=0.487 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhccccc--------CCCcccccCCCcccccccCCCCchhHHHHHHHHHHHHHhhC
Q 020050 43 IVRREVQKAIKVEMRMAASLIRLHFHDCFVN--------GCDASVLLDGSDSEKFAAPNRNSARGFEVIDAIKTAVERQC 114 (332)
Q Consensus 43 iV~~~v~~~~~~~~~~a~~llRL~FHDc~v~--------GcDgSill~~~~~E~~~~~N~~~~~g~~~I~~iK~~le~~c 114 (332)
.|++.|++.+.+++.+++++|||+||||++. ||||||+++ +|+++++|.++.+++++|++||.++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~---~e~~~~~N~~l~~~~~~l~~ik~~~~~-- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE---PELDRPENGGLDKALRALEPIKSAYDG-- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc---ccccCcccccHHHHHHHHHHHHHHcCC--
Confidence 5889999999999999999999999999986 999999996 499999999878999999999999998
Q ss_pred CCCcchhHHHHHhhhhhcccc--CCCcceeecCCCCCCCcc--ccCCC-CCCCCCCCHHHHHHHHHHcCCCcccccccc-
Q 020050 115 SGVVSCADILAIAARDSVLLS--GGPTWKVLLGRRDGLVAN--QTGAN-ALPSPFEGLNILTAKFAAVGLNITDLVSLS- 188 (332)
Q Consensus 115 p~~VScADilalAa~~aV~~~--GGP~~~v~~GR~D~~~s~--~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs- 188 (332)
|++|||||||++||++||+.+ |||.|+|++||+|+..++ ...|. .+|.|+.+++++++.|+++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 899999999999999999999 999999999999999764 33456 789999999999999999999999999999
Q ss_pred Ccccee-cccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHhhcc-----
Q 020050 189 GGAHTI-GLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLINNK----- 262 (332)
Q Consensus 189 GgaHTi-G~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~----- 262 (332)
| |||| |++||..|..|+ | .+|..||.+|||+||++|+.++
T Consensus 157 G-aHti~G~~~~~~~~~~~------------------------~---------~~~~~tp~~fDN~yy~~l~~~~~~~~~ 202 (255)
T cd00314 157 G-AHTLGGKNHGDLLNYEG------------------------S---------GLWTSTPFTFDNAYFKNLLDMNWEWRV 202 (255)
T ss_pred C-CeeccCcccCCCCCccc------------------------C---------CCCCCCCCccchHHHHHHhcCCccccc
Confidence 7 9999 999998877665 1 1244799999999999999988
Q ss_pred -----------ccccchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhc
Q 020050 263 -----------GLLSSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGN 308 (332)
Q Consensus 263 -----------gll~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 308 (332)
++|+||++|+.|+ +|+.+|+.||.|+++|+++|++||+||++
T Consensus 203 ~~~~~~~~~~~~~l~sD~~L~~d~----~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 203 GSPDPDGVKGPGLLPSDYALLSDS----ETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CCccCCCcccCCCchhhHHHhcCH----hHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8999999999999 99999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=5.7e-57 Score=439.82 Aligned_cols=257 Identities=19% Similarity=0.284 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHhc--------hhhhHHHHHHHhhcccc-------cCCC-cccccCCCcccccccCCCCchhHHHHHHH
Q 020050 42 QIVRREVQKAIKVE--------MRMAASLIRLHFHDCFV-------NGCD-ASVLLDGSDSEKFAAPNRNSARGFEVIDA 105 (332)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~~~~g~~~I~~ 105 (332)
+.|++++++.+... ...+|.+|||+|||+.+ ||++ |+|.+ .+|++++.|.++.+++.++++
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf---~pe~~~~~N~gL~~a~~~L~p 121 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF---APLNSWPDNVNLDKARRLLWP 121 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc---ccccCcHhhhhHHHHHHHHHH
Confidence 68899999998865 37999999999999996 8997 78887 469999999999899999999
Q ss_pred HHHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccc-------------------------------
Q 020050 106 IKTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQ------------------------------- 154 (332)
Q Consensus 106 iK~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~------------------------------- 154 (332)
||+++ |..||+||+|+||+.+||+.+|||.|+|.+||.|...+..
T Consensus 122 ik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~m 197 (409)
T cd00649 122 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQM 197 (409)
T ss_pred HHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhc
Confidence 99987 3479999999999999999999999999999999976432
Q ss_pred -------cCCCCCCCCCCCHHHHHHHHHHcCCCcccccccc-CccceecccccccccccccCCCCCCCCCCCCCHHHHHH
Q 020050 155 -------TGANALPSPFEGLNILTAKFAAVGLNITDLVSLS-GGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSE 226 (332)
Q Consensus 155 -------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~ 226 (332)
..+..||.|..++.+|++.|++||||++|||||+ | |||||++||..|.+||. +||.+++.|++.
T Consensus 198 gliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sG-AHTiGkaHc~~~~~rlg-------~dP~~~~~~~~g 269 (409)
T cd00649 198 GLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAG-GHTFGKTHGAGPASHVG-------PEPEAAPIEQQG 269 (409)
T ss_pred cccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccC-CcceeecCcccccccCC-------CCCCcCHHHHHh
Confidence 1122699999999999999999999999999995 8 99999999999999982 699999999999
Q ss_pred HH--hhcCC--CCCCCCCCCC---CCCccccchHHHHHHhh------------------------------------ccc
Q 020050 227 LR--SLCAN--GDGNNTAPLD---RNSIDLFDNHYFQNLIN------------------------------------NKG 263 (332)
Q Consensus 227 L~--~~Cp~--~~~~~~~~lD---~~tp~~FDN~Yy~~ll~------------------------------------~~g 263 (332)
|. ..||. +.++..+.+| ..||.+|||+||++|+. +++
T Consensus 270 Lgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~g 349 (409)
T cd00649 270 LGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPM 349 (409)
T ss_pred hcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcc
Confidence 95 89993 2334456788 47999999999999998 568
Q ss_pred cccchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 020050 264 LLSSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKM--GNVSPLTGTNG 317 (332)
Q Consensus 264 ll~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tG~~G 317 (332)
||+||++|+.|+ +|+++|++||.|+++|+++|++||+|| +.+|+++...|
T Consensus 350 mL~SD~aL~~Dp----~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 350 MLTTDLALRFDP----EYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cchhhHhhhcCc----cHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999 999999999999999999999999999 68999887655
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.7e-54 Score=446.37 Aligned_cols=258 Identities=20% Similarity=0.267 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHhch--------hhhHHHHHHHhhcccc-------cCCC-cccccCCCcccccccCCCCchhHHHHHHH
Q 020050 42 QIVRREVQKAIKVEM--------RMAASLIRLHFHDCFV-------NGCD-ASVLLDGSDSEKFAAPNRNSARGFEVIDA 105 (332)
Q Consensus 42 ~iV~~~v~~~~~~~~--------~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~~~~g~~~I~~ 105 (332)
+.|++++++.+.... ..+|-+|||+||++.+ |||+ |+|.+ .+|++++.|.++.+++.++++
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf---~P~~sw~~N~~Ldka~~lL~p 131 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF---APLNSWPDNVNLDKARRLLWP 131 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec---ccccCchhhhhHHHHHHHHHH
Confidence 578999999998653 7899999999999996 7985 77887 469999999998899999999
Q ss_pred HHHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCcc--------------------------------
Q 020050 106 IKTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVAN-------------------------------- 153 (332)
Q Consensus 106 iK~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~-------------------------------- 153 (332)
||++ ||++|||||||+|||++||+.+|||.|+|.+||+|+..+.
T Consensus 132 Ik~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~G 207 (716)
T TIGR00198 132 IKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMG 207 (716)
T ss_pred HHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhcc
Confidence 9985 7889999999999999999999999999999999994322
Q ss_pred -----ccCCCCCCCCCCCHHHHHHHHHHcCCCccccccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHHH
Q 020050 154 -----QTGANALPSPFEGLNILTAKFAAVGLNITDLVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELR 228 (332)
Q Consensus 154 -----~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~ 228 (332)
+..+..+|.|..++++|++.|++||||++|||||++||||||++||.+|.+|| ++||++++.|++.|+
T Consensus 208 liyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~~~gLg 280 (716)
T TIGR00198 208 LIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIEEQGLG 280 (716)
T ss_pred ccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHHHHHHhc
Confidence 01112699999999999999999999999999997449999999999999998 379999999999999
Q ss_pred hhcC-C---CCCCCCCCCC---CCCccccchHHHHHHhhc----------------------------------cccccc
Q 020050 229 SLCA-N---GDGNNTAPLD---RNSIDLFDNHYFQNLINN----------------------------------KGLLSS 267 (332)
Q Consensus 229 ~~Cp-~---~~~~~~~~lD---~~tp~~FDN~Yy~~ll~~----------------------------------~gll~S 267 (332)
.+|| . +.++..+.+| ..||.+|||+||++|+.. .++|+|
T Consensus 281 ~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~S 360 (716)
T TIGR00198 281 WHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDA 360 (716)
T ss_pred ccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccch
Confidence 9998 2 1233356788 579999999999999974 689999
Q ss_pred hhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhh--cCCCCCCCCC
Q 020050 268 DQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMG--NVSPLTGTNG 317 (332)
Q Consensus 268 D~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tG~~G 317 (332)
|++|..|+ +|+++|+.||.|+++|+++|++||+||+ .+|++...-|
T Consensus 361 DlaL~~Dp----~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 361 DLALRFDP----EFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred hHHhccCc----cHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhhhcC
Confidence 99999999 9999999999999999999999999999 4666554333
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.8e-51 Score=418.69 Aligned_cols=257 Identities=20% Similarity=0.288 Sum_probs=225.4
Q ss_pred HHHHHHHHHHHHhc--------hhhhHHHHHHHhhcccc-------cCCC-cccccCCCcccccccCCCCchhHHHHHHH
Q 020050 42 QIVRREVQKAIKVE--------MRMAASLIRLHFHDCFV-------NGCD-ASVLLDGSDSEKFAAPNRNSARGFEVIDA 105 (332)
Q Consensus 42 ~iV~~~v~~~~~~~--------~~~a~~llRL~FHDc~v-------~GcD-gSill~~~~~E~~~~~N~~~~~g~~~I~~ 105 (332)
+.|++++++.+... ...+|.+|||+||++.+ |||+ |+|.+ .+|++++.|.++.+++.++++
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf---~pe~~w~~N~gL~ka~~~L~p 133 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF---APLNSWPDNVNLDKARRLLWP 133 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC---cccccchhhhhHHHHHHHHHH
Confidence 57999999998865 37899999999999996 8997 77887 469999999999999999999
Q ss_pred HHHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCcccc------------------------------
Q 020050 106 IKTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQT------------------------------ 155 (332)
Q Consensus 106 iK~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~------------------------------ 155 (332)
||+++ |..||+||+|+||+.+|||.+|||.|+|.+||.|...+...
T Consensus 134 ik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~ 209 (726)
T PRK15061 134 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQ 209 (726)
T ss_pred HHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhh
Confidence 99988 45799999999999999999999999999999998654321
Q ss_pred ---------CCCCCCCCCCCHHHHHHHHHHcCCCcccccccc-CccceecccccccccccccCCCCCCCCCCCCCHHHHH
Q 020050 156 ---------GANALPSPFEGLNILTAKFAAVGLNITDLVSLS-GGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVS 225 (332)
Q Consensus 156 ---------~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLs-GgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~ 225 (332)
.++.+|.|..++.+|++.|.+||||++|||||+ | |||||++||..|.+|| ++||.+++.+++
T Consensus 210 mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaG-gHT~GkaHca~~~~rl-------gpdP~~a~~~~q 281 (726)
T PRK15061 210 MGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAG-GHTFGKTHGAGDASHV-------GPEPEAAPIEEQ 281 (726)
T ss_pred ccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccC-CceeeeCCCcCccccc-------CCCCCcCHHHHH
Confidence 111479999999999999999999999999996 7 9999999999999998 379999999999
Q ss_pred HHH--hhcCC--CCCCCCCCCC---CCCccccchHHHHHHhhc------------------------------------c
Q 020050 226 ELR--SLCAN--GDGNNTAPLD---RNSIDLFDNHYFQNLINN------------------------------------K 262 (332)
Q Consensus 226 ~L~--~~Cp~--~~~~~~~~lD---~~tp~~FDN~Yy~~ll~~------------------------------------~ 262 (332)
.|. +.||. +.++....+| ..||++|||+||++|+.+ .
T Consensus 282 gLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~ 361 (726)
T PRK15061 282 GLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAP 361 (726)
T ss_pred hccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCc
Confidence 885 99993 2334456788 579999999999999984 5
Q ss_pred ccccchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 020050 263 GLLSSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGN--VSPLTGTNG 317 (332)
Q Consensus 263 gll~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~tG~~G 317 (332)
+||+||++|..|| +++++|++||.|+++|+++|++||+||++ +|+++..-|
T Consensus 362 ~MLtSD~AL~~DP----~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 362 TMLTTDLALRFDP----EYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccccccHHhhcCC----cHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 8999999999999 99999999999999999999999999955 776654433
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.4e-51 Score=381.79 Aligned_cols=220 Identities=24% Similarity=0.305 Sum_probs=178.1
Q ss_pred HHHHHHHHHHhchhhhHHHHHHHhhccc-------ccCCCcccccCCCccccc-ccCCCCchhHHHHHHHHHHHHHhhCC
Q 020050 44 VRREVQKAIKVEMRMAASLIRLHFHDCF-------VNGCDASVLLDGSDSEKF-AAPNRNSARGFEVIDAIKTAVERQCS 115 (332)
Q Consensus 44 V~~~v~~~~~~~~~~a~~llRL~FHDc~-------v~GcDgSill~~~~~E~~-~~~N~~~~~g~~~I~~iK~~le~~cp 115 (332)
|...-..+...+++++++||||+||||| ++||||||+++.+.+|+. ...|. .+++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~-~l~~~~~i~~~--------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNT-TLNFFVNFYSP--------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhh-ccccceeeccC---------
Confidence 3333344555789999999999999999 899999999965455665 33333 56777766443
Q ss_pred CCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccccCCCCCCCCCCCHHHHHHHHHHcCCCccccccccCccceec
Q 020050 116 GVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQTGANALPSPFEGLNILTAKFAAVGLNITDLVSLSGGAHTIG 195 (332)
Q Consensus 116 ~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGgaHTiG 195 (332)
+||||||||||||+||+.||||.|+|++||+|++++.+. .||.|+.++++|++.|+++||+++|||+|||||||||
T Consensus 97 -~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG 172 (264)
T cd08201 97 -RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLG 172 (264)
T ss_pred -ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeee
Confidence 699999999999999999999999999999999988743 6999999999999999999999999999997699999
Q ss_pred ccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHHHHHHhhccc----------cc
Q 020050 196 LAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHYFQNLINNKG----------LL 265 (332)
Q Consensus 196 ~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Yy~~ll~~~g----------ll 265 (332)
++||..|.+++-. + + ..+...++| .||.+|||+||.+++.+.. .+
T Consensus 173 ~ahc~~f~~~~~~--g------~----------------~~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~ 227 (264)
T cd08201 173 GVHSEDFPEIVPP--G------S----------------VPDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTT 227 (264)
T ss_pred ecccccchhhcCC--c------c----------------ccCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCc
Confidence 9999998877521 0 0 001234567 6999999999999998642 46
Q ss_pred cchhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhc
Q 020050 266 SSDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGN 308 (332)
Q Consensus 266 ~SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 308 (332)
.||..++...+| .| ++++| +++.|.+.++..+.||.+
T Consensus 228 ~sd~r~f~~d~n--~t---~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 228 NSDLRIFSSDGN--VT---MNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred cchhhheecCcc--HH---HHHhc-ChHHHHHHHHHHHHHHhC
Confidence 799999987644 34 45666 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=1.4e-40 Score=313.36 Aligned_cols=220 Identities=18% Similarity=0.241 Sum_probs=182.2
Q ss_pred HHHHHHHHhchhhhHHHHHHHhhcccc-------cCCCcc-cccCCCcccccccCCCC--chhHHHHHHHHHHHHHhh-C
Q 020050 46 REVQKAIKVEMRMAASLIRLHFHDCFV-------NGCDAS-VLLDGSDSEKFAAPNRN--SARGFEVIDAIKTAVERQ-C 114 (332)
Q Consensus 46 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~~-c 114 (332)
+.+++.+....-.++.+|||+||++.+ ||++|+ |.+ .+|++++.|.+ +.+.+.++++||+++... -
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl---~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~ 93 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL---APQKDWEVNEPEELAKVLAVLEGIQKEFNESQS 93 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC---ccccCcCccCcHHHHHHHHHHHHHHHHhccccc
Confidence 677888888888999999999999996 899999 666 57999999998 788999999999998521 1
Q ss_pred C-CCcchhHHHHHhhhhhccccCC-----CcceeecCCCCCCCccccCC--C-CCCCCC------------CCHHHHHHH
Q 020050 115 S-GVVSCADILAIAARDSVLLSGG-----PTWKVLLGRRDGLVANQTGA--N-ALPSPF------------EGLNILTAK 173 (332)
Q Consensus 115 p-~~VScADilalAa~~aV~~~GG-----P~~~v~~GR~D~~~s~~~~~--~-~lP~p~------------~~~~~l~~~ 173 (332)
+ ..||.||+|+||+.+|||.+|| |.|++.+||.|+..+..... . .+|.+. ...+.|++.
T Consensus 94 ~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~ 173 (297)
T cd08200 94 GGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDK 173 (297)
T ss_pred CCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHH
Confidence 1 2699999999999999999999 99999999999987642211 1 345332 235789999
Q ss_pred HHHcCCCccccccccCccc-eecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccch
Q 020050 174 FAAVGLNITDLVSLSGGAH-TIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDN 252 (332)
Q Consensus 174 F~~~Gl~~~e~VaLsGgaH-TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN 252 (332)
|.++|||++|||||+| || ++|++|..+ +.| .|+ .+|.+|||
T Consensus 174 f~rlglsd~EmvaL~G-g~r~lG~~~~~s-------~~G------------------------~wT------~~p~~f~N 215 (297)
T cd08200 174 AQLLTLTAPEMTVLVG-GLRVLGANYGGS-------KHG------------------------VFT------DRPGVLTN 215 (297)
T ss_pred HHhCCCChHHHhheec-chhhcccCCCCC-------CCC------------------------CCc------CCCCcccc
Confidence 9999999999999999 86 799988422 111 233 58999999
Q ss_pred HHHHHHhhcc--------------------c-----cccchhhhhcCCccchhHHHHHHHhhhC--hHHHHHHHHHHHHH
Q 020050 253 HYFQNLINNK--------------------G-----LLSSDQILYSSDEAKSTTKSLVESYSSN--SNLFFANFVNSMIK 305 (332)
Q Consensus 253 ~Yy~~ll~~~--------------------g-----ll~SD~~L~~d~~~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~K 305 (332)
.||++|++.. | .+.+|.+|.+|+ +.|++|+.||.| +++||+||++||.|
T Consensus 216 ~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~----~~R~~ve~YA~dd~~~~F~~DF~~A~~K 291 (297)
T cd08200 216 DFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNS----ELRAVAEVYASDDAQEKFVKDFVAAWTK 291 (297)
T ss_pred HHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCH----HHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 9999999520 1 257899999999 999999999998 99999999999999
Q ss_pred hhcCC
Q 020050 306 MGNVS 310 (332)
Q Consensus 306 m~~lg 310 (332)
|+++.
T Consensus 292 lmeld 296 (297)
T cd08200 292 VMNLD 296 (297)
T ss_pred HHhcC
Confidence 99874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.2e-35 Score=304.95 Aligned_cols=220 Identities=20% Similarity=0.315 Sum_probs=177.7
Q ss_pred HHHHHHH---HHHhchhhhHHHHHHHhhcccc-------cCCCcc-cccCCCcccccccCC--CCchhHHHHHHHHHHHH
Q 020050 44 VRREVQK---AIKVEMRMAASLIRLHFHDCFV-------NGCDAS-VLLDGSDSEKFAAPN--RNSARGFEVIDAIKTAV 110 (332)
Q Consensus 44 V~~~v~~---~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N--~~~~~g~~~I~~iK~~l 110 (332)
|+++|.+ .+....-..+.|||++||++.+ ||++|+ |.+ .+|++++.| .++.+.++++++||+++
T Consensus 430 v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl---~pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL---EPQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec---chhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 3444444 4556667889999999999996 899999 777 579999999 77889999999999988
Q ss_pred HhhCCCCcchhHHHHHhhhhhcccc---CCC--cceeecCCCCCCCccccCCC-CC---CCC------------CCCHHH
Q 020050 111 ERQCSGVVSCADILAIAARDSVLLS---GGP--TWKVLLGRRDGLVANQTGAN-AL---PSP------------FEGLNI 169 (332)
Q Consensus 111 e~~cp~~VScADilalAa~~aV~~~---GGP--~~~v~~GR~D~~~s~~~~~~-~l---P~p------------~~~~~~ 169 (332)
.. ..||.||+|+||+.+|||.+ ||| .++|.+||.|++.+.. +++ .. |.+ ....+.
T Consensus 507 ~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~ 582 (716)
T TIGR00198 507 AK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEEL 582 (716)
T ss_pred CC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHH
Confidence 42 26999999999999999999 897 5899999999987642 232 22 211 123567
Q ss_pred HHHHHHHcCCCccccccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 020050 170 LTAKFAAVGLNITDLVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDL 249 (332)
Q Consensus 170 l~~~F~~~Gl~~~e~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~ 249 (332)
|++.|.++|||++|||||+||.|++|++|..+ +.| .|+ .+|.+
T Consensus 583 l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G------------------------~~T------~~p~~ 625 (716)
T TIGR00198 583 LLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG------------------------VFT------DRVGV 625 (716)
T ss_pred HHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC------------------------CCc------CCCCc
Confidence 89999999999999999999346999998532 111 233 58999
Q ss_pred cchHHHHHHhhcc--------------------c---cc--cchhhhhcCCccchhHHHHHHHhhhCh--HHHHHHHHHH
Q 020050 250 FDNHYFQNLINNK--------------------G---LL--SSDQILYSSDEAKSTTKSLVESYSSNS--NLFFANFVNS 302 (332)
Q Consensus 250 FDN~Yy~~ll~~~--------------------g---ll--~SD~~L~~d~~~~~~t~~~V~~yA~d~--~~F~~~Fa~A 302 (332)
|||.||++|++.. | ++ .+|..|.+|+ +.|++|+.||+|+ ++|++||++|
T Consensus 626 f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~----~lra~aE~YA~dd~~~~F~~DF~~A 701 (716)
T TIGR00198 626 LSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNS----ILRAVAEVYAQDDAREKFVKDFVAA 701 (716)
T ss_pred cccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCH----HHHHHHHHHhcccccchHHHHHHHH
Confidence 9999999999621 1 22 6799999999 9999999999997 8999999999
Q ss_pred HHHhhcCCC
Q 020050 303 MIKMGNVSP 311 (332)
Q Consensus 303 m~Km~~lgv 311 (332)
|.|+++++-
T Consensus 702 w~Klm~ldr 710 (716)
T TIGR00198 702 WTKVMNLDR 710 (716)
T ss_pred HHHHHhCCC
Confidence 999999974
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=9.7e-35 Score=298.68 Aligned_cols=220 Identities=19% Similarity=0.260 Sum_probs=181.9
Q ss_pred HHHHHHHHhchhhhHHHHHHHhhcccc-------cCCCcc-cccCCCcccccccCCC--CchhHHHHHHHHHHHHHhhC-
Q 020050 46 REVQKAIKVEMRMAASLIRLHFHDCFV-------NGCDAS-VLLDGSDSEKFAAPNR--NSARGFEVIDAIKTAVERQC- 114 (332)
Q Consensus 46 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N~--~~~~g~~~I~~iK~~le~~c- 114 (332)
..+++.+....-..+.|||++||++.+ ||++|+ |.| .+|++++.|. ++.+.++++++||+++...-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl---~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~ 518 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL---APQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQS 518 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec---ccccCccccCHHHHHHHHHHHHHHHHHHhhccC
Confidence 577777888888899999999999986 899999 777 4799999999 77889999999999996432
Q ss_pred -CCCcchhHHHHHhhhhhcccc---CC--CcceeecCCCCCCCccccCCC----CCCCCC------------CCHHHHHH
Q 020050 115 -SGVVSCADILAIAARDSVLLS---GG--PTWKVLLGRRDGLVANQTGAN----ALPSPF------------EGLNILTA 172 (332)
Q Consensus 115 -p~~VScADilalAa~~aV~~~---GG--P~~~v~~GR~D~~~s~~~~~~----~lP~p~------------~~~~~l~~ 172 (332)
...||.||+|+||+.+|||.+ || |.|++.+||.|++.+.. +++ .+|.+. ...+.|++
T Consensus 519 ~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 519 GGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 136999999999999999999 68 99999999999987542 221 356532 12478999
Q ss_pred HHHHcCCCccccccccCccc-eecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 020050 173 KFAAVGLNITDLVSLSGGAH-TIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFD 251 (332)
Q Consensus 173 ~F~~~Gl~~~e~VaLsGgaH-TiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FD 251 (332)
.|.++|||++|||||+| || ++|++|..+ +. +.|+ .+|.+||
T Consensus 598 ~a~~lglt~~EmvaL~G-g~r~Lg~~~~~S-------~~------------------------G~~T------~~p~~fs 639 (726)
T PRK15061 598 KAQLLTLTAPEMTVLVG-GLRVLGANYGGS-------KH------------------------GVFT------DRPGVLT 639 (726)
T ss_pred HHHhCCCChHHHhheec-chhhcccCCCCC-------CC------------------------CCCc------CCCCccc
Confidence 99999999999999999 75 899987322 11 1233 4799999
Q ss_pred hHHHHHHhhc----------c----------c---c--ccchhhhhcCCccchhHHHHHHHhhhC--hHHHHHHHHHHHH
Q 020050 252 NHYFQNLINN----------K----------G---L--LSSDQILYSSDEAKSTTKSLVESYSSN--SNLFFANFVNSMI 304 (332)
Q Consensus 252 N~Yy~~ll~~----------~----------g---l--l~SD~~L~~d~~~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~ 304 (332)
|.||++|++. . | + +.+|..|.+|+ +.|++|+.||.| +++|++||++||.
T Consensus 640 NdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds----~lRa~aEvYA~dd~~~kF~~DF~~Aw~ 715 (726)
T PRK15061 640 NDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNS----QLRALAEVYASDDAKEKFVRDFVAAWT 715 (726)
T ss_pred cHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCH----HHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 9999999952 1 1 1 36799999999 999999999999 9999999999999
Q ss_pred HhhcCCC
Q 020050 305 KMGNVSP 311 (332)
Q Consensus 305 Km~~lgv 311 (332)
|+++++-
T Consensus 716 Kvmeldr 722 (726)
T PRK15061 716 KVMNLDR 722 (726)
T ss_pred HHHhCCC
Confidence 9999974
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-32 Score=271.97 Aligned_cols=252 Identities=19% Similarity=0.275 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHHhch--------hhhHHHHHHHhhcccc-------cCCCcccccCCCcccccccCCCCchhHHHHHHHH
Q 020050 42 QIVRREVQKAIKVEM--------RMAASLIRLHFHDCFV-------NGCDASVLLDGSDSEKFAAPNRNSARGFEVIDAI 106 (332)
Q Consensus 42 ~iV~~~v~~~~~~~~--------~~a~~llRL~FHDc~v-------~GcDgSill~~~~~E~~~~~N~~~~~g~~~I~~i 106 (332)
..|++++...+.... ...|.+|||+||-+.+ ||..+.-.. +.++.++|.|.++.+++.++++|
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qR--FaPlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQR--FAPLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCcee--cccccCCCcccchHHHHHHhhhH
Confidence 456677777777654 5789999999999986 566665444 56789999999999999999999
Q ss_pred HHHHHhhCCCCcchhHHHHHhhhhhccccCCCcceeecCCCCCCCccc--------------------------------
Q 020050 107 KTAVERQCSGVVSCADILAIAARDSVLLSGGPTWKVLLGRRDGLVANQ-------------------------------- 154 (332)
Q Consensus 107 K~~le~~cp~~VScADilalAa~~aV~~~GGP~~~v~~GR~D~~~s~~-------------------------------- 154 (332)
|+++ +..||+||+++||+.+|++.+|++++.+..||.|-..+..
T Consensus 148 KkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMG 223 (730)
T COG0376 148 KKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMG 223 (730)
T ss_pred hHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheee
Confidence 9998 4689999999999999999999999999999999877664
Q ss_pred ------cCCCCCCCCCCCHHHHHHHHHHcCCCccccccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHH-
Q 020050 155 ------TGANALPSPFEGLNILTAKFAAVGLNITDLVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSEL- 227 (332)
Q Consensus 155 ------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~e~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L- 227 (332)
.+++..|.|..+..++++.|++|++|++|+|||++||||+|++|...-.+-+ +|+|.-.+.-.+.|
T Consensus 224 LIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlG 296 (730)
T COG0376 224 LIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLG 296 (730)
T ss_pred eEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccc
Confidence 2233689999999999999999999999999999999999999975422222 46776555555543
Q ss_pred -HhhcC-C-CCCCCCCCCC---CCCccccchHHHHHHhhc-----------------------------------ccccc
Q 020050 228 -RSLCA-N-GDGNNTAPLD---RNSIDLFDNHYFQNLINN-----------------------------------KGLLS 266 (332)
Q Consensus 228 -~~~Cp-~-~~~~~~~~lD---~~tp~~FDN~Yy~~ll~~-----------------------------------~gll~ 266 (332)
...|. . +.++....+. ..||++|||.||.+|+.. ..||.
T Consensus 297 W~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Mlt 376 (730)
T COG0376 297 WANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLT 376 (730)
T ss_pred cccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeec
Confidence 34554 1 1222222333 258999999999999852 14799
Q ss_pred chhhhhcCCccchhHHHHHHHhhhChHHHHHHHHHHHHHhhcCC
Q 020050 267 SDQILYSSDEAKSTTKSLVESYSSNSNLFFANFVNSMIKMGNVS 310 (332)
Q Consensus 267 SD~~L~~d~~~~~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lg 310 (332)
+|.+|.-|| ..+.+.++|..||+.|.+.|++||.||.+-.
T Consensus 377 tDlaLr~DP----~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 377 TDLALRFDP----EYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred cchhhhcCh----HHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 999999999 9999999999999999999999999998754
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.63 E-value=3.1e-15 Score=149.07 Aligned_cols=216 Identities=22% Similarity=0.352 Sum_probs=163.5
Q ss_pred HHHHHHHHhchhhhHHHHHHHhhcccc-------cCCCcc-cccCCCcccccccCCCC--chhHHHHHHHHHHHHHhhCC
Q 020050 46 REVQKAIKVEMRMAASLIRLHFHDCFV-------NGCDAS-VLLDGSDSEKFAAPNRN--SARGFEVIDAIKTAVERQCS 115 (332)
Q Consensus 46 ~~v~~~~~~~~~~a~~llRL~FHDc~v-------~GcDgS-ill~~~~~E~~~~~N~~--~~~g~~~I~~iK~~le~~cp 115 (332)
..+++.+.+..-....++-.+|-.+-+ ||.+|. |.| .+.++++.|.. +.+-+.+++.|.+.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirL---aPqkdWevN~P~~l~kvl~~le~iq~~fn---- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRL---APQKDWEVNQPAELAKVLAVLEKIQKEFN---- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEee---cccccCCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 467777888888889999999998875 789988 556 46899999963 4468889999998886
Q ss_pred CCcchhHHHHHhhhhhcccc---CCCc--ceeecCCCCCCCccccCCC--CC--CCC------------CCCHHHHHHHH
Q 020050 116 GVVSCADILAIAARDSVLLS---GGPT--WKVLLGRRDGLVANQTGAN--AL--PSP------------FEGLNILTAKF 174 (332)
Q Consensus 116 ~~VScADilalAa~~aV~~~---GGP~--~~v~~GR~D~~~s~~~~~~--~l--P~p------------~~~~~~l~~~F 174 (332)
..||.||+|+|++..||+.+ +|-. +||.+||.|+.+.... ++ .+ |-. ..+-+-|++.-
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 36999999999999999987 6655 5667999999775422 21 11 211 12244577888
Q ss_pred HHcCCCccccccccCccceecccccccccccccCCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCCCCCCCccccchHH
Q 020050 175 AAVGLNITDLVSLSGGAHTIGLAKCAFFSNRLSNFSGTGAPDATMDTSLVSELRSLCANGDGNNTAPLDRNSIDLFDNHY 254 (332)
Q Consensus 175 ~~~Gl~~~e~VaLsGgaHTiG~~hc~~f~~Rl~~~~g~~~~dp~~d~~~~~~L~~~Cp~~~~~~~~~lD~~tp~~FDN~Y 254 (332)
+-.+|+..||++|+||-..+|. ||.| ....|.-| .|.++.|.|
T Consensus 604 qlL~LtapemtVLiGGlRvLg~-----------n~g~------------------------s~~GVfT~--~pg~LtndF 646 (730)
T COG0376 604 QLLTLTAPEMTVLIGGLRVLGA-----------NYGG------------------------SKHGVFTD--RPGVLTNDF 646 (730)
T ss_pred HHhccCCccceEEEcceEeecc-----------CCCC------------------------Cccceecc--Ccccccchh
Confidence 8899999999999998888886 3332 22344444 689999999
Q ss_pred HHHHhhc----------cccc---------------cchhhhhcCCccchhHHHHHHHhhhC--hHHHHHHHHHHHHHhh
Q 020050 255 FQNLINN----------KGLL---------------SSDQILYSSDEAKSTTKSLVESYSSN--SNLFFANFVNSMIKMG 307 (332)
Q Consensus 255 y~~ll~~----------~gll---------------~SD~~L~~d~~~~~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km~ 307 (332)
|.||++- ++++ ..|..+-+++ ..|.+.+-||.| +++|.+||+.||.|.+
T Consensus 647 FvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns----~LRA~aEVYa~dda~ekFv~DFvaaw~kVM 722 (730)
T COG0376 647 FVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNS----ELRALAEVYASDDAKEKFVKDFVAAWTKVM 722 (730)
T ss_pred hhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcH----HHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 9999963 1222 2355555555 999999999985 7899999999999999
Q ss_pred cCC
Q 020050 308 NVS 310 (332)
Q Consensus 308 ~lg 310 (332)
++.
T Consensus 723 n~D 725 (730)
T COG0376 723 NLD 725 (730)
T ss_pred ccc
Confidence 885
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=63.46 E-value=82 Score=31.13 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=28.0
Q ss_pred cCCCcceeecCCCCCCCccccCCCCCCC-C---CCCHHHHHHHHHHcCCCc
Q 020050 135 SGGPTWKVLLGRRDGLVANQTGANALPS-P---FEGLNILTAKFAAVGLNI 181 (332)
Q Consensus 135 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~-p---~~~~~~l~~~F~~~Gl~~ 181 (332)
+|-..+..++||.+...-.+......+. . -.++.++.+.|++.|+..
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 3778889999999554221111111221 1 135777888888888754
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.06 E-value=8.5 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhchhhhHHHHHHHhhcccc
Q 020050 43 IVRREVQKAIKVEMRMAASLIRLHFHDCFV 72 (332)
Q Consensus 43 iV~~~v~~~~~~~~~~a~~llRL~FHDc~v 72 (332)
|.|+.+.+.+.++|.+-...||+-+--.+.
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qmGq 53 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQMGQ 53 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhCC
Confidence 999999999999999999999999876653
No 21
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=51.52 E-value=13 Score=29.06 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 020050 294 LFFANFVNSMIKMGNVSP 311 (332)
Q Consensus 294 ~F~~~Fa~Am~Km~~lgv 311 (332)
+...+|..||.||+.||.
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 355799999999999975
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=46.78 E-value=1.6e+02 Score=29.81 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=29.6
Q ss_pred cCCCcceeecCCCCCCCccccCCCCCCCCCC----CHHHHHHHHHHcCCCcc
Q 020050 135 SGGPTWKVLLGRRDGLVANQTGANALPSPFE----GLNILTAKFAAVGLNIT 182 (332)
Q Consensus 135 ~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~----~~~~l~~~F~~~Gl~~~ 182 (332)
+|-..+..+.||.|-..-.......+|...+ .+.++.+.|++.|+..+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 4778899999998773321111112443332 47778888888887543
No 23
>PRK00523 hypothetical protein; Provisional
Probab=43.14 E-value=37 Score=26.07 Aligned_cols=35 Identities=11% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCcCcccCCChhHHHHHHHHHHHHHHhchhhhHHHHHHHhhccc
Q 020050 28 LSTNFYSKTCPNVLQIVRREVQKAIKVEMRMAASLIRLHFHDCF 71 (332)
Q Consensus 28 l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~ 71 (332)
+--||| +-|+.+++.+.++|.+-...||.-+--.+
T Consensus 19 ~~~Gff---------iark~~~k~l~~NPpine~mir~M~~QMG 53 (72)
T PRK00523 19 GIIGYF---------VSKKMFKKQIRENPPITENMIRAMYMQMG 53 (72)
T ss_pred HHHHHH---------HHHHHHHHHHHHCcCCCHHHHHHHHHHhC
Confidence 455688 89999999999999999999999887664
No 24
>PRK01844 hypothetical protein; Provisional
Probab=40.20 E-value=24 Score=27.11 Aligned_cols=35 Identities=9% Similarity=0.283 Sum_probs=30.5
Q ss_pred CCcCcccCCChhHHHHHHHHHHHHHHhchhhhHHHHHHHhhccc
Q 020050 28 LSTNFYSKTCPNVLQIVRREVQKAIKVEMRMAASLIRLHFHDCF 71 (332)
Q Consensus 28 l~~~fY~~sCp~~e~iV~~~v~~~~~~~~~~a~~llRL~FHDc~ 71 (332)
+--||| +-|+.+++.++++|.+-...||.-+--.+
T Consensus 18 ~~~Gff---------~ark~~~k~lk~NPpine~mir~Mm~QMG 52 (72)
T PRK01844 18 VALGFF---------IARKYMMNYLQKNPPINEQMLKMMMMQMG 52 (72)
T ss_pred HHHHHH---------HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 355688 89999999999999999999999887664
Done!