BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020053
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 32/166 (19%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A +R+ Q+ ++ +P + PL NI EW + +RGP T +EGG YHG++ P E+P
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 72 FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
FKPPS ++T PNGRF+ T++CLSI++ H
Sbjct: 75 FKPPSIYMIT-------------------------------PNGRFKCNTRLCLSITDFH 103
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKEERRALAIKS 177
P+ W P+WSV T L L++FM LGS++ +R LA++S
Sbjct: 104 PDTWNPAWSVSTILTGLLSFM-VEKGPTLGSIETSDFTKRQLAVQS 148
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 22/141 (15%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +L E+K +Q P + F ++L E +++ W+ AI GP +T +EGG + R++ P +YP+
Sbjct: 10 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 69
Query: 73 KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
PP+F LT M H + D + PP + + S P
Sbjct: 70 SPPAFRFLTK-----MWHPNIYETGD----VCISILHPPVDDPQ-----------SGELP 109
Query: 133 -EHWQPSWSVRTALVALIAFM 152
E W P+ +VRT L+++I+ +
Sbjct: 110 SERWNPTQNVRTILLSVISLL 130
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 71/141 (50%), Gaps = 22/141 (15%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
K +L E+K +Q P + F ++L E +++ W+ AI GP +T +EGG + R++ P +YP+
Sbjct: 7 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPY 66
Query: 73 KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
PP+F LT M H + D + PP + + S P
Sbjct: 67 SPPAFRFLTK-----MWHPNIYETGD----VCISILHPPVDDPQ-----------SGELP 106
Query: 133 -EHWQPSWSVRTALVALIAFM 152
E W P+ +VRT L+++I+ +
Sbjct: 107 SERWNPTQNVRTILLSVISLL 127
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 33/146 (22%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E++++Q +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 7 ALKRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
FKPP T K Y PN + ICL I
Sbjct: 67 FKPPKVAFTT---------KIY------------------HPN--INSNGSICLDILR-- 95
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
W P+ +V L+++ + + +PN
Sbjct: 96 -SQWSPALTVSKVLLSICSLL-CDPN 119
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 33/146 (22%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + + P+ +++F WQ I GP D+ + GG++ I P++YP
Sbjct: 22 ALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYP 81
Query: 72 FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
FKPP T K Y PN +Q ICL I
Sbjct: 82 FKPPKVNFTT---------KIY------------------HPN--INSQGAICLDILK-- 110
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
+ W P+ ++ L+++ + + T+PN
Sbjct: 111 -DQWSPALTISKVLLSISSLL-TDPN 134
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 66/146 (45%), Gaps = 33/146 (22%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 20 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 79
Query: 72 FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
FKPP T K Y PN + ICL I
Sbjct: 80 FKPPKIAFTT---------KIY------------------HPN--INSNGSICLDILR-- 108
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
W P+ +V L+++ + + +PN
Sbjct: 109 -SQWSPALTVSKVLLSICSLL-CDPN 132
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 4 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKIAFTT 73
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 68 FKPPKIAFTT 77
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 48/169 (28%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
++ A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ +
Sbjct: 3 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 62
Query: 66 LPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKI 123
P +YP PP C F P P+GR +
Sbjct: 63 FPLDYPLSPPKMRF-------------------------TCEMFHPNIYPDGR------V 91
Query: 124 CLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
C+SI H P E W P SV L+++++ + P + +GA
Sbjct: 92 CISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 139
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 48/169 (28%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQ 65
++ A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ +
Sbjct: 2 HMAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 61
Query: 66 LPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKI 123
P +YP PP C F P P+GR +
Sbjct: 62 FPLDYPLSPPKMRF-------------------------TCEMFHPNIYPDGR------V 90
Query: 124 CLSISNHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
C+SI H P E W P SV L+++++ + P + +GA
Sbjct: 91 CISIL-HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 138
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 48/164 (29%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ + P +Y
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 71 PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKICLSIS 128
P PP C F P P+GR +C+SI
Sbjct: 64 PLSPPKMRF-------------------------TCEMFHPNIYPDGR------VCISIL 92
Query: 129 NHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
H P E W P SV L+++++ + P + +GA
Sbjct: 93 -HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 135
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 153
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++Q +P + P+ +++F WQ I GP D+ ++GG++ + P +YP
Sbjct: 8 ALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYP 67
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 68 FKPPKIAFTT 77
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 48/164 (29%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A+KR++ E K++ NP + ++ P+ EEN FEW+ I GP DT FE G++ + P +Y
Sbjct: 10 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 69
Query: 71 PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKICLSIS 128
P PP C F P P+GR +C+SI
Sbjct: 70 PLSPPKMRF-------------------------TCEMFHPNIYPDGR------VCISIL 98
Query: 129 NHHP-----------EHWQPSWSVRTALVALIAFM--PTNPNGA 159
H P E W P SV L+++++ + P + +GA
Sbjct: 99 -HAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGA 141
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 33/146 (22%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ + GG++ I P +YP
Sbjct: 2 ALKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 72 FKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH 131
FKPP V + + H PN + ICL I
Sbjct: 62 FKPPK-----VNFTTRIYH----------------------PN--INSNGSICLDILR-- 90
Query: 132 PEHWQPSWSVRTALVALIAFMPTNPN 157
+ W P+ ++ L+++ + + T+PN
Sbjct: 91 -DQWSPALTISKVLLSISSLL-TDPN 114
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b,
Wild-Type
Length = 149
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 7 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 66
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 67 FKPPKVAFTT 76
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 80 FKPPKVAFTT 89
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating
Enzyme Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 62 FKPPKVAFTT 71
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 12 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 72 FKPPKVAFTT 81
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 80 FKPPKVAFTT 89
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 62 FKPPKVAFTT 71
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 5 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 65 FKPPKVAFTT 74
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ P+ +R++++ K++Q +P P E+NI W+ I GP +T FE G + ++
Sbjct: 1 MTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
EYP KPP TV+ S M H NV A ICL I
Sbjct: 61 EEYPNKPP-----TVKFISKMFHP------------NVYA------------DGSICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEER 170
+ W P++ V L ++ + + P +P +L + Y++ R
Sbjct: 92 LQN---RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRR 135
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 1 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 61 FKPPKVAFTT 70
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 12 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 71
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 72 FKPPKVAFTT 81
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 2 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 61
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 62 FKPPKVAFTT 71
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 36/168 (21%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
++ P+ +R++++ K++Q +P P E+NI W+ I GP +T FE G + ++
Sbjct: 3 HMTTPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEF 62
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
EYP KPP TV+ S M H NV A ICL
Sbjct: 63 TEEYPNKPP-----TVKFISKMFHP------------NVYA------------DGSICLD 93
Query: 127 ISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEER 170
I + W P++ V L ++ + + P +P +L + Y++ R
Sbjct: 94 ILQN---RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRR 138
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 10 ALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 69
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 70 FKPPKVAFTT 79
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A++RI +E++E+Q +P + + P+ ++IF W I GP D+ ++GG++ + P +YP
Sbjct: 5 AMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYP 64
Query: 72 FKPPSFMLLT 81
FK P +T
Sbjct: 65 FKAPRVTFMT 74
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI +E+ +++ +P + P+ ++++ WQ +I GP D+ + GG++ I P +YPFK
Sbjct: 5 KRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64
Query: 74 PPSFMLLT 81
PP T
Sbjct: 65 PPKISFTT 72
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 1 ASKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 60
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 61 FKPPKVAFTT 70
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 73/176 (41%), Gaps = 40/176 (22%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA +R++++ K +Q +P P E NI +W I GP T FE G + I+
Sbjct: 1 MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
EYP KPP TVR S M H NV A ICL I
Sbjct: 61 EEYPNKPP-----TVRFLSKMFHP------------NVYA------------DGSICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFM-------PTNPNGALGSLDYKKE-ERRALAI 175
+ W P++ V + L ++ + + P N A + K+E E+R AI
Sbjct: 92 LQN---RWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAI 144
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ I GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E+ ++ +P + P+ +++F WQ GP D+ ++GG++ I P +YP
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 64 FKPPKVAFTT 73
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 36/167 (21%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA KR++++ K +Q +P P + NI W I GP DT ++GG + +Q
Sbjct: 1 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
+YP KPP TVR S M H PN ICL I
Sbjct: 61 EDYPNKPP-----TVRFVSRMFH----------------------PN--IYADGSICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEER 170
+ W P + V L ++ + + P +P + + Y + +R
Sbjct: 92 LQN---QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKR 135
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
A+KRI +E++++ +P + P+ +++F WQ I GP ++ ++GG++ I P +YP
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 72 FKPPSFMLLT 81
FKPP T
Sbjct: 65 FKPPKVAFTT 74
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI +E + + + P M++P+ EN + I GP T +EGG Y + LP +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
PP LT K Y PN + +ICL I +
Sbjct: 64 PPKVRFLT---------KIY------------------HPN--IDKLGRICLDILK---D 91
Query: 134 HWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRA 172
W P+ +RT L+++ A + P +P + + +K+++ A
Sbjct: 92 KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDA 134
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI +E + + + P M++P+ EN + I GP T +EGG Y + LP +YP +
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
PP LT K Y PN + +ICL I +
Sbjct: 64 PPKVRFLT---------KIY------------------HPN--IDKLGRICLDILK---D 91
Query: 134 HWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRA 172
W P+ +RT L+++ A + P +P + + +K+++ A
Sbjct: 92 KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDA 134
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 37/170 (21%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 8 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 67
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P LT K Y PN + +ICL +
Sbjct: 68 APKVRFLT---------KIY------------------HPN--IDRLGRICLDVLK---T 95
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
+W P+ +RT L+++ A + + NPN L + D+ K E+ A A K+RE
Sbjct: 96 NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 144
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 79/170 (46%), Gaps = 37/170 (21%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P LT K Y PN + +ICL +
Sbjct: 66 APKVRFLT---------KIY------------------HPN--IDRLGRICLDVLK---T 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
+W P+ +RT L+++ A + + NPN L + D+ K E+ A A K+RE
Sbjct: 94 NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 142
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
L + + KRI +E+ ++ +P + + P +NI+EW+ I GP + +EGG++ I
Sbjct: 45 LLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFT 104
Query: 68 AEYPFKPPSFMLLT-VRCCSLMEHKSYCL 95
EYPFKPP T + C++ CL
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICL 133
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYP 71
+ KRI +E+ E+ +P + + P +NI+EW+ I GP + +EGG++ I +YP
Sbjct: 4 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYP 63
Query: 72 FKPPSFMLLT-VRCCSLMEHKSYCL 95
FKPP T + C++ CL
Sbjct: 64 FKPPKVTFRTRIYHCNINSQGVICL 88
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 24/156 (15%)
Query: 18 QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
+++ E+ NP + F + +++N ++ W+ I GP DT +EGG++ + P +YP +PP
Sbjct: 24 RQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPK 83
Query: 77 FMLLT-VRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHW 135
+T + ++ ++ C+ + + + P+ E W
Sbjct: 84 MKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE--------------------ERW 123
Query: 136 QPSWSVRTALVALIAFMPTNPNG-ALGSLDYKKEER 170
P +V T ++++I+ + +PNG + ++D KE R
Sbjct: 124 LPIHTVETIMISVISML-ADPNGDSPANVDAAKEWR 158
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KR+ QE++ + + + P +N+F+W + GP DT +E Y ++ P++YP+K
Sbjct: 12 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYK 71
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
PP V F P + + ICL I E
Sbjct: 72 PP-----------------------------VVKFTTPCWHPNVDQSGNICLDILK---E 99
Query: 134 HWQPSWSVRTALVALIAFMPTNPNGA 159
+W S+ VRT L++L + + PN A
Sbjct: 100 NWTASYDVRTILLSLQSLL-GEPNNA 124
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 96/210 (45%), Gaps = 42/210 (20%)
Query: 3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
E+ Y + + R+ +E+K++++ + + + N FEW I+GP T +EGG +
Sbjct: 15 ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74
Query: 63 RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTK 122
I +P +YP+ PP ++ + + H PN +T
Sbjct: 75 AITIPNDYPYNPPK-----IKFVTKIWH----------------------PNISSQTGA- 106
Query: 123 ICLSISNHHPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSR 178
ICL + + W P+ ++RTAL+++ A + P +P A + YK E AL +K+
Sbjct: 107 ICLDVLKN---EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYK--ENHALFVKTA 161
Query: 179 EAAPK-FGT-PE---RQKLIDEIHEYMLSK 203
K F T P+ R+ +I +I E S+
Sbjct: 162 SVWTKTFATGPKEEPREVIIKKITEMGFSE 191
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 33/152 (21%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
+ PA +R++++ K M+ + + PL +N+ W I GP DT +E G + ++
Sbjct: 1 MSTPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSI 127
EYP KPP V+ S M H NV A NG +ICL I
Sbjct: 61 EEYPNKPPH-----VKFLSEMFHP------------NVYA------NG------EICLDI 91
Query: 128 SNHHPEHWQPSWSVRTALVALIAFMPTNPNGA 159
+ W P++ V + L ++ + +PN A
Sbjct: 92 LQN---RWTPTYDVASILTSIQSLF-NDPNPA 119
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 37/170 (21%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P LT K Y PN + +I L +
Sbjct: 66 APKVRFLT---------KIY------------------HPN--IDRLGRISLDVLK---T 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
+W P+ +RT L+++ A + + NPN L + D+ K E+ A A K+RE
Sbjct: 94 NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 142
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 6 YNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHG 62
+++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQL 111
Query: 63 RIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
I++P YPF PP +T + + +C D
Sbjct: 112 EIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 147
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 37/170 (21%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
KRI++E +++ S+P + P ++N+ +Q I GP + +E GI+ + LP +YP +
Sbjct: 6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPME 65
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P LT K Y D R I L +
Sbjct: 66 APKVRFLT---------KIYHPAIDRLGR--------------------ISLDVLK---T 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALG---SLDYKKEERRALAIKSRE 179
+W P+ +RT L+++ A + + NPN L + D+ K E+ A A K+RE
Sbjct: 94 NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKA-KARE 142
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 5 RYNLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYH 61
R ++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 15 RGSMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 74
Query: 62 GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
I++P YPF PP +T + + +C D
Sbjct: 75 LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 111
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 8 LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y I
Sbjct: 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 64
Query: 65 QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
++P YPF PP +T + + +C D
Sbjct: 65 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 98
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 7 NLKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGR 63
++ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y
Sbjct: 2 SMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLE 61
Query: 64 IQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
I++P YPF PP +T + + +C D
Sbjct: 62 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 96
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 43/163 (26%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A KR+L+E++++ + ++ P E NIF W I+GP DT + G+++ +++ P +Y
Sbjct: 5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDY 64
Query: 71 PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
P PP S++ Y PNG ++C+SI H
Sbjct: 65 PLSPPKLTFTP----SILHPNIY-------------------PNG------EVCISIL-H 94
Query: 131 HP-----------EHWQPSWSVRTALVALIAFMPTNPNGALGS 162
P E W P SV L+++++ + + PN G+
Sbjct: 95 SPGDDPNMYELAEERWSPVQSVEKILLSVMSML-SEPNIESGA 136
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 8 LKNPAVKRILQEVKEM--QSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+ N AV+RI +E KE+ S + + + L +EN E + I GP DT +EGG Y I
Sbjct: 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 61
Query: 65 QLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
++P YPF PP +T + + +C D
Sbjct: 62 KIPETYPFNPPKVRFITKIWHPNISSVTGAICLD 95
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 8 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 67
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P +T K Y PN + +ICL I +
Sbjct: 68 APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 95
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
W P+ +RT L+++ A + NP+ L +
Sbjct: 96 KWSPALQIRTVLLSIQALLSAPNPDDPLAN 125
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 65
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P +T K Y PN + +ICL I +
Sbjct: 66 APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 93
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
W P+ +RT L+++ A + NP+ L +
Sbjct: 94 KWSPALQIRTVLLSIQALLSAPNPDDPLAN 123
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 9 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 68
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P +T K Y PN + +ICL I +
Sbjct: 69 APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 96
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
W P+ +RT L+++ A + NP+ L +
Sbjct: 97 KWSPALQIRTVLLSIQALLSAPNPDDPLAN 126
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 4 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 63
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P +T K Y PN + +ICL I +
Sbjct: 64 APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 91
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
W P+ +RT L+++ A + NP+ L +
Sbjct: 92 KWSPALQIRTVLLSIQALLSAPNPDDPLAN 121
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 62/150 (41%), Gaps = 33/150 (22%)
Query: 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFK 73
+RI++E + + + P + P E N + I GP D+ FEGG + + LP EYP
Sbjct: 11 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 70
Query: 74 PPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE 133
P +T K Y PN + +ICL I +
Sbjct: 71 APKVRFMT---------KIY------------------HPN--VDKLGRICLDILK---D 98
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGALGS 162
W P+ +RT L+++ A + NP+ L +
Sbjct: 99 KWSPALQIRTVLLSIQALLSAPNPDDPLAN 128
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 44/177 (24%)
Query: 18 QEVKEMQSNPSDDFMSLPLEEN-IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPS 76
+++ +M+ P D F + +++N I++W+ + GP DT +EGG + + P +YP KPP
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 77 FMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP---- 132
++ S + H PN + + +C+SI H P
Sbjct: 70 -----MKFISEIWH----------------------PN--IDKEGNVCISIL-HDPGDDK 99
Query: 133 -------EHWQPSWSVRTALVALIAFMPTNPN-GALGSLDYKKEERRALAIKSREAA 181
E W P +V T L+++I+ M T+PN + ++D K +R A ++ A
Sbjct: 100 WGYERPEERWLPVHTVETILLSVIS-MLTDPNFESPANVDAAKMQRENYAEFKKKVA 155
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A +R+++E++E++ +F ++ ++E N+ WQ I P + ++ G + I PAEY
Sbjct: 5 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 63
Query: 71 PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
PFKPP T K Y PN + + ++CL + +
Sbjct: 64 PFKPPKITFKT---------KIY------------------HPN--IDEKGQVCLPVISA 94
Query: 131 HPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSREAAPKFG 185
E+W+P+ + +LIA + P +P A + +Y K +R+ + E K+G
Sbjct: 95 --ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 150
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 38/179 (21%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A +R+++E++E++ +F ++ ++E N+ WQ I P + ++ G + I PAEY
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 61
Query: 71 PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
PFKPP T K Y PN + + ++CL + +
Sbjct: 62 PFKPPKITFKT---------KIY------------------HPN--IDEKGQVCLPVISA 92
Query: 131 HPEHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKEERRALAIKSREAAPKFG 185
E+W+P+ + +LIA + P +P A + +Y K +R+ + E K+G
Sbjct: 93 --ENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSK-DRKKFCKNAEEFTKKYG 148
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 36/160 (22%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
KRI++E++ ++ +P+ + E +I + GP T +EGG + I++P EYPF
Sbjct: 4 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 63
Query: 73 KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
KPP T K Y PN T ICL I +
Sbjct: 64 KPPKMQFDT---------KVY------------------HPNISSVTGA-ICLDILKN-- 93
Query: 133 EHWQPSWSVRTALVALIAFM----PTNPNGALGSLDYKKE 168
W P ++++AL++L A + P +P A + Y ++
Sbjct: 94 -AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRD 132
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 36/151 (23%)
Query: 14 KRILQEVKEMQSNPSDDF-MSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF 72
KRI++E++ ++ +P+ + E +I + GP T +EGG + I++P EYPF
Sbjct: 5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPF 64
Query: 73 KPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132
KPP T K Y PN T ICL I +
Sbjct: 65 KPPKMQFDT---------KVY------------------HPNISSVTGA-ICLDILRN-- 94
Query: 133 EHWQPSWSVRTALVALIAFM----PTNPNGA 159
W P ++++AL++L A + P +P A
Sbjct: 95 -AWSPVITLKSALISLQALLQSPEPNDPQDA 124
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY 60
M + NL ++ + +EV + ++P D P EE++ + Q I GP T + GG++
Sbjct: 3 MNSNVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLF 62
Query: 61 HGRIQLPAEYPFKPPSFMLLT 81
++ L ++P PP LT
Sbjct: 63 RMKLLLGKDFPASPPKGYFLT 83
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 35/125 (28%)
Query: 39 NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
+I W+ I GP T +EGG + I +P +YP+ PP +T K +
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT---------KIW----- 118
Query: 99 YGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFM----PT 154
PN +T ICL I H W P+ ++RTAL+++ A + PT
Sbjct: 119 -------------HPNISSQTGA-ICLDILKH---EWSPALTIRTALLSIQAMLADPVPT 161
Query: 155 NPNGA 159
+P A
Sbjct: 162 DPQDA 166
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 32/144 (22%)
Query: 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPA 68
+ P KR+ QE+ + + + P +N+F+W I G T +E Y ++ P+
Sbjct: 28 RGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPS 87
Query: 69 EYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSIS 128
YP+ P+ LT C PN +TQ I L I
Sbjct: 88 GYPYNAPTVKFLTP-----------CY----------------HPN--VDTQGNISLDIL 118
Query: 129 NHHPEHWQPSWSVRTALVALIAFM 152
E W + VRT L+++ + +
Sbjct: 119 K---EKWSALYDVRTILLSIQSLL 139
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 46/182 (25%)
Query: 15 RILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAE 69
R+ +E K+ + + F + P + ++ W+ I G T +EGG+Y + P E
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 70 YPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISN 129
YP +PP C F PP + +CLSI N
Sbjct: 74 YPTRPPK-----------------------------CRFTPPLFHPNVYPSGTVCLSILN 104
Query: 130 HHPEHWQPSWSVRTALVALIAFMPTNPNGA---------LGSLDYKKEERRALAIKSREA 180
E W+P+ +++ L+ + + +PN A + D + E+R A ++RE
Sbjct: 105 EE-EGWKPAITIKQILLGIQDLL-DDPNIASPAQTEAYTMFKKDKVEYEKRVRA-QAREN 161
Query: 181 AP 182
AP
Sbjct: 162 AP 163
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 7 NLKNPAVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYH 61
N+ A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++
Sbjct: 2 NMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 62 GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQT 121
R+ +YP PP C F PP +
Sbjct: 62 LRMLFKDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSG 92
Query: 122 KICLSISNHHPEHWQPSWSVRTALVAL 148
+CLSI + W+P+ +++ L+ +
Sbjct: 93 TVCLSILEED-KDWRPAITIKQILLGI 118
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + + +CLS
Sbjct: 68 KDDYPSSPPK-----------------------------CKFEPPLFHPQVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 99 ILEED-KDWRPAITIKQILLGI 119
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 68 KDDYPSSPPK-----------------------------CKFEPPLFHPNVAPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 99 ILEED-KDWRPAITIKQILLGI 119
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 10 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 69
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 70 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 100
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 101 ILEED-KDWRPAITIKQILLGI 121
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 7 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 66
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 67 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 97
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 98 ILEED-KDWRPAITIKQILLGI 118
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 6 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 65
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 66 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 96
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 97 ILEED-KDWRPAITIKQILLGI 117
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 65 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 95
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 96 ILEED-KDWRPAITIKQILLGI 116
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 68 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 99 ILEED-KDWRPAITIKQILLGI 119
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 68 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 99 ILEED-KDWRPAITIKQILLGI 119
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 35/142 (24%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 8 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 67
Query: 67 PAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLS 126
+YP PP C F PP + +CLS
Sbjct: 68 KDDYPSSPPK-----------------------------CKFEPPLFHPNVYPSGTVCLS 98
Query: 127 ISNHHPEHWQPSWSVRTALVAL 148
I + W+P+ +++ L+ +
Sbjct: 99 ILEED-KDWRPAITIKQILLGI 119
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 45/155 (29%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPP--SFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQP 113
E + I++P+ YP PP SFM + C++
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK------------------------- 97
Query: 114 NGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 148
+ICL+I PE W P W + + A+
Sbjct: 98 ----SATGEICLNILK--PEEWTPVWDLLHCVHAV 126
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 45/155 (29%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPP--SFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQP 113
E + I++P+ YP PP SFM + C++
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVK------------------------- 97
Query: 114 NGRFETQTKICLSISNHHPEHWQPSWSVRTALVAL 148
+ICL+I PE W P W + + A+
Sbjct: 98 ----SATGEICLNILK--PEEWTPVWDLLHCVHAV 126
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 12 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 71
Query: 64 IQLPAEYPFKPPSFMLLT 81
++ +YP PPS +T
Sbjct: 72 VECGPKYPEAPPSVRFVT 89
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 7 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 66
Query: 64 IQLPAEYPFKPPSFMLLT 81
++ +YP PPS +T
Sbjct: 67 VECGPKYPEAPPSVRFVT 84
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 2 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 61
Query: 64 IQLPAEYPFKPPSFMLLT 81
++ +YP PPS +T
Sbjct: 62 VECGPKYPEAPPSVRFVT 79
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 1 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLK 60
Query: 64 IQLPAEYPFKPPSFMLLT 81
++ +YP PPS +T
Sbjct: 61 VECGPKYPEAPPSVRFVT 78
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 42 EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCAD 98
E+ GP T +EGG++ R+ LP +YPFK PS + ++ S +C D
Sbjct: 52 EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLD 108
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 41/153 (26%)
Query: 8 LKNPAVKRILQEVKE-MQSNPSDDFMSLPL-----------EENIFEWQFAIRGPGDTEF 55
+ + + RI++E K +++ SDD ++ P E ++ +W+ I GP DT +
Sbjct: 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPY 62
Query: 56 EGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNG 115
E + I++P+ YP PP S M++ + +NV +
Sbjct: 63 ENHQFRILIEVPSSYPMNPPKI--------SFMQNNI--------LHSNVKS-------- 98
Query: 116 RFETQTKICLSISNHHPEHWQPSWSVRTALVAL 148
+ICL+I PE W P W + + A+
Sbjct: 99 ---ATGEICLNILK--PEEWTPVWDLLHCVHAV 126
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 42 EWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGV 101
++ GP T +EGGI+ + LP +YPF PS + ++ S +C D
Sbjct: 30 DFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVIN 89
Query: 102 RT--------NVCAFFPPQ 112
+T NV F PQ
Sbjct: 90 QTWTPLYSLVNVFEVFLPQ 108
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYPFKPP 75
+YP PP
Sbjct: 65 KDDYPSSPP 73
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
A+ R+ QE K + + F+++P + N+ W+ AI G T +EGG++ R+
Sbjct: 5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 64
Query: 67 PAEYPFKPP 75
+YP PP
Sbjct: 65 KDDYPSSPP 73
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 38 ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCA 97
+ + E+ +GP T +E G + +QLP++YPFK PS ++ +S +C
Sbjct: 35 DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCL 94
Query: 98 D 98
D
Sbjct: 95 D 95
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 4 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMILGPPRTIYENRIYSLK 63
Query: 64 IQLPAEYPFKPPSFMLLT 81
I+ +YP PP +T
Sbjct: 64 IECGPKYPEAPPFVRFVT 81
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
Length = 152
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A R+++E++++Q P +L ++ N+ W A+ P + ++ RI P EY
Sbjct: 2 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 60
Query: 71 PFKPPSFMLLT 81
PFKPP T
Sbjct: 61 PFKPPMIKFTT 71
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 12 AVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
A R+++E++++Q P +L ++ N+ W A+ P + ++ RI P EY
Sbjct: 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEY 63
Query: 71 PFKPPSFMLLT 81
PFKPP T
Sbjct: 64 PFKPPMIKFTT 74
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 22 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 81
Query: 64 IQLPAEYPFKPPSFMLLT 81
I+ +YP PP +T
Sbjct: 82 IECGPKYPEAPPFVRFVT 99
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEEN----IFEWQFAIRGPGDTEFEGGIYHGR 63
+K P R+L+E++E Q D +S LE++ + W I GP T +E IY +
Sbjct: 32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLK 91
Query: 64 IQLPAEYPFKPPSFMLLT 81
I+ +YP PP +T
Sbjct: 92 IECGPKYPEAPPFVRFVT 109
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 40/153 (26%)
Query: 13 VKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
++R+ +E K+ + + F + P+++ ++ +W+ I G T + GG+Y ++ P
Sbjct: 8 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 67
Query: 68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKICL 125
EYP KPP F+ P P+G ICL
Sbjct: 68 NEYPSKPPKVKF-------------------------PAGFYHPNVYPSGT------ICL 96
Query: 126 SISNHHPEHWQPSWSVRTALVALIAFMPT-NPN 157
SI N + W+P+ +++ ++ + + + NPN
Sbjct: 97 SILNED-QDWRPAITLKQIVLGVQDLLDSPNPN 128
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 66/153 (43%), Gaps = 40/153 (26%)
Query: 13 VKRILQEVKEMQSNPSDDFMSLPLEE-----NIFEWQFAIRGPGDTEFEGGIYHGRIQLP 67
++R+ +E K+ + + F + P+++ ++ +W+ I G T + GG+Y ++ P
Sbjct: 6 LQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYP 65
Query: 68 AEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQ--PNGRFETQTKICL 125
EYP KPP F+ P P+G ICL
Sbjct: 66 NEYPSKPPKVKF-------------------------PAGFYHPNVYPSGT------ICL 94
Query: 126 SISNHHPEHWQPSWSVRTALVALIAFMPT-NPN 157
SI N + W+P+ +++ ++ + + + NPN
Sbjct: 95 SILNED-QDWRPAITLKQIVLGVQDLLDSPNPN 126
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 22 EMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT 81
+++ N + P+ E++ EW+ I G ++ ++G ++ I +EY + PP +T
Sbjct: 34 DLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT 93
Query: 82 V 82
+
Sbjct: 94 I 94
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 31/148 (20%)
Query: 15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKP 74
R+ +E+ + + P ++ + + + I G +T +E G++ + +P YPF+P
Sbjct: 8 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67
Query: 75 PSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPE- 133
P LT P + ++ +ICL + P+
Sbjct: 68 PQIRFLT-----------------------------PIYHPNIDSAGRICLDVLKLPPKG 98
Query: 134 HWQPSWSVRTALVALIAFMPT-NPNGAL 160
W+PS ++ T L ++ M NP+ L
Sbjct: 99 AWRPSLNIATVLTSIQLLMSEPNPDDPL 126
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2
From Plasmodium Falciparum
Length = 136
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 3 EDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHG 62
+ +YNL N A RI +E+ NP + NI W G +T + +Y
Sbjct: 13 KTKYNLGN-ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKI 71
Query: 63 RIQLPAEYPFKPPSFMLL 80
+I P YP KPP L
Sbjct: 72 KIIFPDNYPLKPPIVYFL 89
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 5 RYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRI 64
+YN+ N A RI +E+ +NP + NI W G +T + +Y +I
Sbjct: 1 KYNMGN-ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 65 QLPAEYPFKPPSFMLL 80
P +YP KPP L
Sbjct: 60 IFPDDYPLKPPIVYFL 75
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 34/142 (23%)
Query: 14 KRILQEVKEMQSNPSDDFMSL---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEY 70
KR+ +E+ +Q++P M+L ++ +I +W + G T +EG + + + Y
Sbjct: 25 KRLQKELLALQNDPPPG-MTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 71 PFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNH 130
PF P M N+ P P+ + ICLSI
Sbjct: 84 PFDSPQVMF---------------------TGENI----PVHPH--VYSNGHICLSILT- 115
Query: 131 HPEHWQPSWSVRTALVALIAFM 152
E W P+ SV++ +++I+ +
Sbjct: 116 --EDWSPALSVQSVCLSIISML 135
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 38/108 (35%), Gaps = 28/108 (25%)
Query: 37 EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLC 96
EE + + I GP DT + G + + P +YP PP L T
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT-------------- 151
Query: 97 ADYGVRTNVCAFFPPQPNGRFETQTKICLSISN----HHPEHWQPSWS 140
+ VR N PN K+CLSI N E W P S
Sbjct: 152 GGHSVRFN--------PN--LYNDGKVCLSILNTWHGRPEEKWNPQTS 189
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 114 NGRFETQTK-----ICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLD 164
NG F T I S++N+ SW+ TA VA +++ P N A GSLD
Sbjct: 502 NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 557
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
P R+L E++ Q + +S LE + W I G T FE IY I
Sbjct: 25 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 84
Query: 67 PAEYPFKPPS 76
YP PP+
Sbjct: 85 DDNYPDSPPT 94
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE----NIFEWQFAIRGPGDTEFEGGIYHGRIQL 66
P R+L E++ Q + +S LE + W I G T FE IY I
Sbjct: 21 PRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFC 80
Query: 67 PAEYPFKPPS 76
YP PP+
Sbjct: 81 DDNYPDSPPT 90
>pdb|1WXQ|A Chain A, Crystal Structure Of Gtp Binding Protein From Pyrococcus
Horikoshii Ot3
Length = 397
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 10/118 (8%)
Query: 164 DYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEYMLSKAP--PVPQLSTCEEQPGN-- 219
D ++++RAL + + +FG+ Q++I+ + +L P PV + +Q GN
Sbjct: 280 DXSEKQKRALXVIKEKVLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVL 339
Query: 220 ------REGEAQASSIDAMVTGAGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSR 271
++G + T G+G + R V ED N + +R
Sbjct: 340 PHVFLXKKGSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSVTR 397
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,971,086
Number of Sequences: 62578
Number of extensions: 470825
Number of successful extensions: 1425
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1290
Number of HSP's gapped (non-prelim): 139
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)