Query 020053
Match_columns 332
No_of_seqs 225 out of 1561
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020053.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020053hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0428 Non-canonical ubiquiti 100.0 3.2E-51 7E-56 378.3 17.3 295 1-331 1-312 (314)
2 KOG0417 Ubiquitin-protein liga 100.0 1.3E-42 2.8E-47 301.2 13.6 143 12-186 2-147 (148)
3 COG5078 Ubiquitin-protein liga 100.0 1.4E-41 3E-46 298.4 15.1 145 10-186 4-152 (153)
4 PTZ00390 ubiquitin-conjugating 100.0 1.4E-38 3.1E-43 278.9 16.4 144 12-187 3-149 (152)
5 PLN00172 ubiquitin conjugating 100.0 3.1E-38 6.7E-43 275.1 16.4 143 12-186 2-147 (147)
6 KOG0419 Ubiquitin-protein liga 100.0 1.4E-38 3.1E-43 270.8 13.0 144 8-183 1-147 (152)
7 KOG0418 Ubiquitin-protein liga 100.0 8.2E-35 1.8E-39 260.3 14.8 159 8-198 1-171 (200)
8 KOG0425 Ubiquitin-protein liga 100.0 5.4E-34 1.2E-38 248.8 15.1 143 11-183 5-162 (171)
9 KOG0426 Ubiquitin-protein liga 100.0 8.8E-34 1.9E-38 241.9 14.3 146 8-183 1-161 (165)
10 KOG0424 Ubiquitin-protein liga 100.0 2.7E-33 5.9E-38 241.4 15.1 149 8-186 1-157 (158)
11 PF00179 UQ_con: Ubiquitin-con 100.0 1.3E-33 2.8E-38 241.6 11.2 136 15-181 1-140 (140)
12 KOG0894 Ubiquitin-protein liga 100.0 5.7E-33 1.2E-37 253.0 15.8 156 9-198 3-158 (244)
13 cd00195 UBCc Ubiquitin-conjuga 100.0 1.3E-32 2.8E-37 235.9 14.4 137 14-181 2-141 (141)
14 smart00212 UBCc Ubiquitin-conj 100.0 1.1E-31 2.4E-36 231.1 14.8 141 14-185 1-145 (145)
15 KOG0421 Ubiquitin-protein liga 100.0 6.4E-32 1.4E-36 233.2 10.4 139 9-181 27-169 (175)
16 KOG0422 Ubiquitin-protein liga 100.0 1.6E-28 3.4E-33 211.1 12.8 145 12-188 3-151 (153)
17 KOG0416 Ubiquitin-protein liga 100.0 2.9E-28 6.2E-33 215.4 10.1 144 12-189 4-151 (189)
18 KOG0423 Ubiquitin-protein liga 100.0 4.8E-28 1E-32 214.7 11.2 153 1-199 1-156 (223)
19 KOG0420 Ubiquitin-protein liga 99.9 4.4E-26 9.5E-31 201.9 10.1 143 9-186 26-175 (184)
20 KOG0427 Ubiquitin conjugating 99.9 3.3E-25 7.1E-30 189.2 10.5 119 4-154 8-126 (161)
21 KOG0895 Ubiquitin-conjugating 99.6 3.2E-16 6.9E-21 168.2 6.7 117 13-156 853-974 (1101)
22 KOG0429 Ubiquitin-conjugating 99.6 4.6E-15 1E-19 136.6 12.6 137 15-184 23-168 (258)
23 KOG0895 Ubiquitin-conjugating 99.6 1.2E-14 2.5E-19 156.4 11.1 120 10-155 281-405 (1101)
24 KOG0896 Ubiquitin-conjugating 99.1 1.7E-10 3.7E-15 99.4 8.1 106 15-152 9-121 (138)
25 KOG0897 Predicted ubiquitin-co 98.0 4.6E-06 1E-10 70.5 2.6 63 61-153 14-76 (122)
26 PF14461 Prok-E2_B: Prokaryoti 97.9 1.8E-05 3.9E-10 67.9 6.2 72 56-156 34-108 (133)
27 PF05743 UEV: UEV domain; Int 97.4 0.00038 8.3E-09 59.3 6.1 86 39-156 31-119 (121)
28 PF08694 UFC1: Ubiquitin-fold 96.3 0.0035 7.6E-08 55.3 3.1 66 10-81 23-98 (161)
29 KOG2391 Vacuolar sorting prote 95.8 0.031 6.8E-07 55.5 7.8 118 6-156 15-139 (365)
30 PF05773 RWD: RWD domain; Int 94.2 0.13 2.8E-06 41.2 5.8 67 14-81 4-72 (113)
31 KOG3357 Uncharacterized conser 94.0 0.11 2.4E-06 45.4 5.2 65 11-81 27-101 (167)
32 smart00591 RWD domain in RING 93.1 0.39 8.4E-06 38.2 6.8 40 42-81 24-64 (107)
33 PF14462 Prok-E2_E: Prokaryoti 91.7 1 2.2E-05 38.9 8.0 101 30-152 13-119 (122)
34 PF14457 Prok-E2_A: Prokaryoti 85.0 6.6 0.00014 35.3 8.8 74 56-152 48-124 (162)
35 PF09765 WD-3: WD-repeat regio 71.8 7.6 0.00016 38.0 5.4 60 11-79 99-158 (291)
36 PF12669 P12: Virus attachment 64.8 5.6 0.00012 29.9 2.3 25 301-325 2-27 (58)
37 COG3765 WzzB Chain length dete 56.8 18 0.00039 36.5 4.8 42 281-322 300-344 (347)
38 PF01307 Plant_vir_prot: Plant 50.4 14 0.00031 30.9 2.6 40 293-332 5-52 (104)
39 KOG0309 Conserved WD40 repeat- 48.7 43 0.00093 37.4 6.4 68 13-82 422-491 (1081)
40 KOG4018 Uncharacterized conser 47.4 51 0.0011 31.2 5.9 64 15-81 6-72 (215)
41 PF04995 CcmD: Heme exporter p 42.8 29 0.00062 24.6 2.8 18 298-315 5-22 (46)
42 TIGR03141 cytochro_ccmD heme e 38.8 36 0.00079 24.1 2.8 18 298-315 6-23 (45)
43 PF06679 DUF1180: Protein of u 36.9 2.5E+02 0.0054 25.5 8.5 27 293-320 92-118 (163)
44 PF05763 DUF835: Protein of un 36.8 30 0.00064 30.1 2.6 23 309-331 61-83 (136)
45 PRK10381 LPS O-antigen length 35.3 60 0.0013 32.8 4.8 38 285-322 326-366 (377)
46 PTZ00234 variable surface prot 33.2 2.9E+02 0.0063 28.8 9.4 35 294-328 359-393 (433)
47 PF07462 MSP1_C: Merozoite sur 32.5 90 0.002 33.5 5.6 13 140-152 218-230 (574)
48 TIGR02929 anfG_nitrog Fe-only 32.5 1.9E+02 0.004 24.8 6.5 71 131-201 18-92 (109)
49 PF05957 DUF883: Bacterial pro 31.9 40 0.00087 26.9 2.4 14 301-314 74-87 (94)
50 PF13544 N_methyl_2: Type IV p 30.5 54 0.0012 21.5 2.4 23 292-314 9-31 (31)
51 PF14460 Prok-E2_D: Prokaryoti 30.3 28 0.0006 31.3 1.4 16 112-129 97-112 (175)
52 PF10215 Ost4: Oligosaccaryltr 29.6 73 0.0016 21.9 3.0 21 295-315 3-23 (35)
53 TIGR02930 vnfG_nitrog V-contai 29.0 2.2E+02 0.0048 24.3 6.4 71 131-201 18-92 (109)
54 PF07438 DUF1514: Protein of u 28.6 71 0.0015 24.9 3.1 14 313-326 36-49 (66)
55 COG4333 Uncharacterized protei 27.0 40 0.00087 30.3 1.7 17 314-330 60-76 (167)
56 PF13807 GNVR: G-rich domain o 26.7 77 0.0017 24.6 3.2 17 302-318 66-82 (82)
57 COG4499 Predicted membrane pro 25.9 50 0.0011 34.0 2.4 21 295-315 216-236 (434)
58 PRK10404 hypothetical protein; 25.7 54 0.0012 27.3 2.2 14 300-313 80-93 (101)
59 TIGR03737 PRTRC_B PRTRC system 25.5 41 0.0009 32.0 1.7 32 112-152 138-170 (228)
60 PF12652 CotJB: CotJB protein; 24.9 1.9E+02 0.0041 23.0 5.1 41 145-186 15-55 (78)
61 PF03139 AnfG_VnfG: Vanadium/a 24.8 2.8E+02 0.0061 23.8 6.3 72 130-201 20-95 (112)
62 PF03908 Sec20: Sec20; InterP 23.8 79 0.0017 25.3 2.8 24 294-317 67-90 (92)
63 PRK11053 dihydropteridine redu 23.7 1E+02 0.0022 27.9 3.9 32 298-331 135-166 (217)
64 PRK10132 hypothetical protein; 23.1 64 0.0014 27.2 2.2 13 301-313 87-99 (108)
65 PF13950 Epimerase_Csub: UDP-g 21.6 51 0.0011 24.8 1.2 25 134-158 37-61 (62)
66 KOG3593 Predicted receptor-lik 21.1 3E+02 0.0064 27.7 6.6 21 297-317 327-348 (355)
67 PF05808 Podoplanin: Podoplani 20.9 32 0.0007 31.2 0.0 17 302-318 140-156 (162)
No 1
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-51 Score=378.26 Aligned_cols=295 Identities=46% Similarity=0.711 Sum_probs=231.3
Q ss_pred CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (332)
Q Consensus 1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl 80 (332)
|++.+||.+|++.|||+||.++|+ +|.+.+.+.|.++|+++|+++|.||.||-||||+||.+|.||.+||++||.+..+
T Consensus 1 ~m~erYN~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLL 79 (314)
T KOG0428|consen 1 MMEERYNLKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILL 79 (314)
T ss_pred CchhhhcccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEE
Confidence 788999999999999999999999 8889999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCChh
Q 020053 81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGAL 160 (332)
Q Consensus 81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~~~ 160 (332)
| |||||+.+.+|||+|.++|+|.|.|+|+|++.|++|+.+|.+.|++++
T Consensus 80 T-------------------------------pNGRFE~nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~GAl 128 (314)
T KOG0428|consen 80 T-------------------------------PNGRFEVNKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPEGAL 128 (314)
T ss_pred c-------------------------------CCCceeeCceEEEEecCCCccccCcchhHHHHHHHHHccccCCCCCcc
Confidence 9 999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhHHhHHHHHHHHHHHHhh-hCChhHHHHH----H-HHHHHhhcCCCCCCCCCccccCC-C--CCCcccccccccc
Q 020053 161 GSLDYKKEERRALAIKSREAAPK-FGTPERQKLI----D-EIHEYMLSKAPPVPQLSTCEEQP-G--NREGEAQASSIDA 231 (332)
Q Consensus 161 ~a~~~~~~dr~~y~~kare~~~k-ya~~~~~~l~----~-e~~~~~~~~~~~vp~~~~~~~~~-~--~~~~~~~~~~~~~ 231 (332)
++.+|-.++|+.+++++++|..| |+.+.+++++ | ++|.+...|+-.++-....|... + .++.+.|.+...+
T Consensus 129 GSlDYpp~ERr~LAkkS~e~~ck~cGs~mk~~llp~~~d~~~~Q~~eaK~la~q~~f~~E~~~~~k~vsea~~q~~p~et 208 (314)
T KOG0428|consen 129 GSLDYPPEERRALAKKSQEFCCKGCGSAMKDVLLPLKSDSDSSQAQEAKELARQISFKAEVNSSGKTVSEADLQHSPSET 208 (314)
T ss_pred ccCcCCHHHHHHHHHhhcccCccccCChhhheeeeccCCchHHHHHHHHHHhhcCcchhhhccccchhhhhhccCCcccc
Confidence 99999999999999999999988 9999999998 5 89999888877766555544322 1 2333334433332
Q ss_pred cccC---CCCCCCCCCCCcccccccccCCCCCCCCCCCCCcccccCC-----CCccCcCCCCCcccccCCCccchhHHHH
Q 020053 232 MVTG---AGEGLPAPVGDRIIEEVQEDLPASMNPNPVVAGTSREVPA-----NASGVQLQPKPETRVQKPADDRLFTWAA 303 (332)
Q Consensus 232 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (332)
...- +..++.+-..+.+.+.-+.+.+++.|++.+. +.+..++ .++..-.|.......+++-|+ +||++
T Consensus 209 ~~~~e~~s~~T~~~~~~~~~a~~~e~~~~Vn~n~S~vP--~~~aqpavq~~~~~sp~v~Q~hapR~a~t~~d~--~t~l~ 284 (314)
T KOG0428|consen 209 DLQDEIASASTSYGLQNSSAASFHEPTQPVNKNTSMVP--QRRAQPAVQRRLSTSPDVIQGHAPRDAHTDHDG--STVLI 284 (314)
T ss_pred cchhhhhcccccccccchhhhhhcCCCcccccccccCc--hhcccccccceecCCchhhhccCcccccCCCCC--ceehH
Confidence 2211 1112222223333322222444444444433 2222221 122222222333455666555 99999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccccC
Q 020053 304 VGLTIAILVLLLKKFMKSNGHGTVFMDG 331 (332)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
+||||||++|++|||.++|||-.-|||.
T Consensus 285 viltiAl~~lif~~~~lan~y~~dfmd~ 312 (314)
T KOG0428|consen 285 VILTIALAALIFRRIYLANEYIFDFMDF 312 (314)
T ss_pred HHHHHHHHHHHHHHHHHhccceeccccc
Confidence 9999999999999999999999999974
No 2
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-42 Score=301.15 Aligned_cols=143 Identities=31% Similarity=0.709 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK 91 (332)
Q Consensus 12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp 91 (332)
+.+||.||+++|++++++||++.|+++|+++|+++|.||.|||||||+|++.|.||++|||+||+|+|+| +|||
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~T-----kIyH- 75 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLT-----KIYH- 75 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeec-----cccc-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053 92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE 168 (332)
Q Consensus 92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~ 168 (332)
|| ++++|.||||||+ +.|+|+++|+.||++|++||.+ ||++++. .+..|+.
T Consensus 76 ---------------------PN--I~~~G~IclDILk---~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~ 129 (148)
T KOG0417|consen 76 ---------------------PN--IDSNGRICLDILK---DQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKT 129 (148)
T ss_pred ---------------------CC--cCccccchHHhhh---ccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHh
Confidence 99 6799999999998 8899999999999999999976 7788775 5788899
Q ss_pred hHHHHHHHHHHHHhhhCC
Q 020053 169 ERRALAIKSREAAPKFGT 186 (332)
Q Consensus 169 dr~~y~~kare~~~kya~ 186 (332)
||.+|.+.||+|++|||+
T Consensus 130 d~~~~~~~ARewt~kyA~ 147 (148)
T KOG0417|consen 130 DRAKYERTAREWTRKYAM 147 (148)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 999999999999999986
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-41 Score=298.42 Aligned_cols=145 Identities=33% Similarity=0.739 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053 10 NPAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM 88 (332)
Q Consensus 10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i 88 (332)
..+.+||++|++.|++++++++++.|.++ |+++|+++|.||.+||||||+|++.|.||++||++||+|+|.| +|
T Consensus 4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t-----~i 78 (153)
T COG5078 4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTT-----KI 78 (153)
T ss_pred hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecc-----CC
Confidence 34999999999999999999999999987 9999999999999999999999999999999999999999999 89
Q ss_pred cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHh
Q 020053 89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDY 165 (332)
Q Consensus 89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~ 165 (332)
|| || |+.+|+|||+||+ ++|+|+++|++||++|++||.+ |++++++ |+.+
T Consensus 79 ~H----------------------PN--V~~~G~vCLdIL~---~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~ 131 (153)
T COG5078 79 FH----------------------PN--VDPSGNVCLDILK---DRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATL 131 (153)
T ss_pred cC----------------------CC--cCCCCCChhHHHh---CCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHH
Confidence 99 99 6799999999998 9999999999999999999976 5566665 6788
Q ss_pred hHHhHHHHHHHHHHHHhhhCC
Q 020053 166 KKEERRALAIKSREAAPKFGT 186 (332)
Q Consensus 166 ~~~dr~~y~~kare~~~kya~ 186 (332)
+++|++.|.+++|+++.+|+.
T Consensus 132 ~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 132 YREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred HHhCHHHHHHHHHHHHHHhcc
Confidence 899999999999999999874
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=1.4e-38 Score=278.86 Aligned_cols=144 Identities=30% Similarity=0.591 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK 91 (332)
Q Consensus 12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp 91 (332)
+.|||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +|||
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t-----~i~H- 76 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLT-----KIYH- 76 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEec-----CCee-
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053 92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE 168 (332)
Q Consensus 92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~ 168 (332)
|| |+.+|.||+++|+ +.|+|+++|++||++|++||.+ +|+++++ ++++|++
T Consensus 77 ---------------------PN--V~~~G~iCl~iL~---~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~ 130 (152)
T PTZ00390 77 ---------------------PN--IDKLGRICLDILK---DKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKN 130 (152)
T ss_pred ---------------------ce--ECCCCeEECccCc---ccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 99 6789999999997 8999999999999999999965 6777765 6788899
Q ss_pred hHHHHHHHHHHHHhhhCCh
Q 020053 169 ERRALAIKSREAAPKFGTP 187 (332)
Q Consensus 169 dr~~y~~kare~~~kya~~ 187 (332)
|+..|.++||+|+++|+..
T Consensus 131 d~~~f~~~a~~~~~~~a~~ 149 (152)
T PTZ00390 131 NRADAEKVAREWNQKYAKH 149 (152)
T ss_pred CHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999873
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=3.1e-38 Score=275.12 Aligned_cols=143 Identities=33% Similarity=0.680 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK 91 (332)
Q Consensus 12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp 91 (332)
|.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.| +|||
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t-----~i~H- 75 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTT-----KIYH- 75 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEec-----Cccc-
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHH
Q 020053 92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKE 168 (332)
Q Consensus 92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~ 168 (332)
|| |+.+|.||+++|+ +.|+|+++|++||++|++||.+ +++++++ +++++.+
T Consensus 76 ---------------------PN--v~~~G~iCl~il~---~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~ 129 (147)
T PLN00172 76 ---------------------PN--INSNGSICLDILR---DQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKE 129 (147)
T ss_pred ---------------------ce--ECCCCEEEcccCc---CCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH
Confidence 99 6789999999997 8999999999999999999954 6666665 6788899
Q ss_pred hHHHHHHHHHHHHhhhCC
Q 020053 169 ERRALAIKSREAAPKFGT 186 (332)
Q Consensus 169 dr~~y~~kare~~~kya~ 186 (332)
|+++|+++||+|+.+|+.
T Consensus 130 ~~~~f~~~a~~~~~~~a~ 147 (147)
T PLN00172 130 NRSRYEATAREWTQRYAT 147 (147)
T ss_pred CHHHHHHHHHHHHHHhhC
Confidence 999999999999999873
No 6
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=270.77 Aligned_cols=144 Identities=31% Similarity=0.670 Sum_probs=135.0
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccc
Q 020053 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSL 87 (332)
Q Consensus 8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~ 87 (332)
|+.+|.+||++|++.|+++++.|++..|.++|++.|.++|+||.+|||+||+|++.|.|.++||.+||.|+|++ +
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs-----~ 75 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS-----K 75 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee-----e
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhH
Q 020053 88 MEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLD 164 (332)
Q Consensus 88 i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~ 164 (332)
||| || +|.+|.|||++|. ..|+|.|++.+||.+||+||.+ ||+++.+ |++
T Consensus 76 mFH----------------------PN--vya~G~iClDiLq---NrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~ 128 (152)
T KOG0419|consen 76 MFH----------------------PN--VYADGSICLDILQ---NRWSPTYDVASILTSIQSLLNDPNPNSPANSEAAR 128 (152)
T ss_pred ccC----------------------CC--cCCCCcchHHHHh---cCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHH
Confidence 999 99 7999999999998 7999999999999999999964 6666655 689
Q ss_pred hhHHhHHHHHHHHHHHHhh
Q 020053 165 YKKEERRALAIKSREAAPK 183 (332)
Q Consensus 165 ~~~~dr~~y~~kare~~~k 183 (332)
++.++++.|.+++++.+.+
T Consensus 129 Lf~e~~rey~rrVk~~veq 147 (152)
T KOG0419|consen 129 LFSENKREYERRVKETVEQ 147 (152)
T ss_pred HHhhChHHHHHHHHHHHHH
Confidence 9999999999999987644
No 7
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-35 Score=260.30 Aligned_cols=159 Identities=31% Similarity=0.527 Sum_probs=143.5
Q ss_pred CChHHHHHHHHHHHHHhhCC---CCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053 8 LKNPAVKRILQEVKEMQSNP---SDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC 84 (332)
Q Consensus 8 m~~~a~kRL~kEl~~l~~~p---~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~ 84 (332)
|++ +.+||++|++++.+++ ..||.+...++|+.+..+.|.||+|||||||+|.+.|++|++|||+||+|+|.|
T Consensus 1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~T--- 76 (200)
T KOG0418|consen 1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFIT--- 76 (200)
T ss_pred Ccc-HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeee---
Confidence 677 9999999999999988 579999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhhh-
Q 020053 85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALGS- 162 (332)
Q Consensus 85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~a- 162 (332)
+||| ||| ...+|.||||+|+ +.|.+++|++++|++||++|.. +|.++..+
T Consensus 77 --kIwH----------------------PnV-Ss~tGaICLDilk---d~Wa~slTlrtvLislQalL~~pEp~dPqDav 128 (200)
T KOG0418|consen 77 --KIWH----------------------PNV-SSQTGAICLDILK---DQWAASLTLRTVLISLQALLCAPEPKDPQDAV 128 (200)
T ss_pred --eeec----------------------CCC-Ccccccchhhhhh---cccchhhhHHHHHHHHHHHHcCCCCCChHHHH
Confidence 9999 998 4788999999998 9999999999999999999964 67766554
Q ss_pred -hHhhHHhHHHHHHHHHHHHhhhCCh------hHHHHHHHHHH
Q 020053 163 -LDYKKEERRALAIKSREAAPKFGTP------ERQKLIDEIHE 198 (332)
Q Consensus 163 -~~~~~~dr~~y~~kare~~~kya~~------~~~~l~~e~~~ 198 (332)
++.|.++++.|.+.+|.|+..||+. ...+.++.+.+
T Consensus 129 va~qy~~n~~~F~~TAr~WT~~fA~~~~~~~~~~~~~v~~l~~ 171 (200)
T KOG0418|consen 129 VAEQYVDNYEMFYKTARYWTTEFAGGRLPDDPWDKKKVDSLIE 171 (200)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 5666799999999999999999976 44466666665
No 8
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-34 Score=248.82 Aligned_cols=143 Identities=31% Similarity=0.639 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053 11 PAVKRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME 89 (332)
Q Consensus 11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~ 89 (332)
.+..-|+++|++|++++.+||.+..+++ |+++|.+.|.||++|+||||+|+.++.||.+||++||+++|.| +||
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s-----~mw 79 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS-----KMW 79 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh-----hhc
Confidence 4778899999999999999999988755 9999999999999999999999999999999999999999999 999
Q ss_pred ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC----------CCCCCCCCHHHHHHHHHHhCCCCCCCh
Q 020053 90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP----------EHWQPSWSVRTALVALIAFMPTNPNGA 159 (332)
Q Consensus 90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~----------e~WsP~~ti~sVL~sI~~lL~~nP~~~ 159 (332)
| || ||.+|++|++||.... |.|.|.+|+++||++|++|| ++||+.
T Consensus 80 H----------------------PN--vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL-~~PN~~ 134 (171)
T KOG0425|consen 80 H----------------------PN--VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISML-NSPNDE 134 (171)
T ss_pred C----------------------CC--cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHH-cCCCCC
Confidence 9 99 8999999999996332 58999999999999999999 556543
Q ss_pred hh----hhHhhHHhHHHHHHHHHHHHhh
Q 020053 160 LG----SLDYKKEERRALAIKSREAAPK 183 (332)
Q Consensus 160 ~~----a~~~~~~dr~~y~~kare~~~k 183 (332)
.+ |+..+++++++|.+++++++.+
T Consensus 135 SPANVDAa~~~Ren~~EykkkV~r~vr~ 162 (171)
T KOG0425|consen 135 SPANVDAAKEWRENPEEYKKKVRRCVRR 162 (171)
T ss_pred CccchHHHHHHhhCHHHHHHHHHHHHHH
Confidence 32 5677789999999999998876
No 9
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-34 Score=241.86 Aligned_cols=146 Identities=32% Similarity=0.703 Sum_probs=133.6
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecC-CCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccc
Q 020053 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPL-EENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCS 86 (332)
Q Consensus 8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~-ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~ 86 (332)
|+..|+|||++||++|..++++||.+.|. ++|.++|.+.|.||++|+|+||+|..++.||.|||.+||+++|..
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc----- 75 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC----- 75 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec-----
Confidence 56789999999999999999999999997 789999999999999999999999999999999999999999998
Q ss_pred cccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----------CCCCCCCCCHHHHHHHHHHhCCCCC
Q 020053 87 LMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----------PEHWQPSWSVRTALVALIAFMPTNP 156 (332)
Q Consensus 87 ~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----------~e~WsP~~ti~sVL~sI~~lL~~nP 156 (332)
.||| || ++.+|+||++||... .+.|+|.++++.||+++.++| ..|
T Consensus 76 ~~fH----------------------PN--iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SML-aEP 130 (165)
T KOG0426|consen 76 EMFH----------------------PN--IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSML-AEP 130 (165)
T ss_pred cccc----------------------Cc--ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHH-cCC
Confidence 8888 99 899999999999633 268999999999999999999 556
Q ss_pred CChhh----hhHhhHHhHHHHHHHHHHHHhh
Q 020053 157 NGALG----SLDYKKEERRALAIKSREAAPK 183 (332)
Q Consensus 157 ~~~~~----a~~~~~~dr~~y~~kare~~~k 183 (332)
|+..+ |..++++||.+|.+.++..+.|
T Consensus 131 NdESgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 131 NDESGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred CcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66554 5788999999999999998876
No 10
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=241.44 Aligned_cols=149 Identities=24% Similarity=0.523 Sum_probs=133.4
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCeEEecCC-----CCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccc
Q 020053 8 LKNPAVKRILQEVKEMQSNPSDDFMSLPLE-----ENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTV 82 (332)
Q Consensus 8 m~~~a~kRL~kEl~~l~~~p~~gi~v~p~e-----dnl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~ 82 (332)
|+..++.||+.|-+.|.++.+-||++.|.. .|++.|+|.|.||.+|+||||.|.+++.||++||++||+++|.+
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~- 79 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKP- 79 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCC-
Confidence 567789999999999999999999999972 48999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh
Q 020053 83 RCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG 161 (332)
Q Consensus 83 ~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~ 161 (332)
++|| || ||.+|.|||+||+.. .+|+|++||.+||+.||.||.+ |+.++..
T Consensus 80 ----pl~H----------------------PN--VypsgtVcLsiL~e~-~~W~paitikqiL~gIqdLL~~Pn~~~pAq 130 (158)
T KOG0424|consen 80 ----PLFH----------------------PN--VYPSGTVCLSILNEE-KDWRPAITIKQILLGIQDLLDTPNITSPAQ 130 (158)
T ss_pred ----CCcC----------------------CC--cCCCCcEehhhhccc-cCCCchhhHHHHHHHHHHHhcCCCCCCchh
Confidence 7777 99 799999999999832 3599999999999999999954 4445433
Q ss_pred --hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053 162 --SLDYKKEERRALAIKSREAAPKFGT 186 (332)
Q Consensus 162 --a~~~~~~dr~~y~~kare~~~kya~ 186 (332)
|...+.+||..|++++|..+++|+.
T Consensus 131 ~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 131 TEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred hHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 5677789999999999999999874
No 11
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=1.3e-33 Score=241.58 Aligned_cols=136 Identities=40% Similarity=0.813 Sum_probs=118.7
Q ss_pred HHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccccc
Q 020053 15 RILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSY 93 (332)
Q Consensus 15 RL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~ 93 (332)
||++|+++|+++++.|+.+.+.++ |+++|+++|.||.+|||+||+|+++|.||++||++||+|+|.| +|||
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t-----~i~H--- 72 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLT-----PIFH--- 72 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESS-----S-SB---
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccc-----cccc---
Confidence 899999999999999999999986 9999999999999999999999999999999999999999999 8888
Q ss_pred ccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHhH
Q 020053 94 CLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEER 170 (332)
Q Consensus 94 ~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~dr 170 (332)
|| |+.+|.||+++|. .+.|+|.++|++||.+|+++|.+ +++++.+ ++..+++|+
T Consensus 73 -------------------Pn--i~~~G~icl~~l~--~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~ 129 (140)
T PF00179_consen 73 -------------------PN--IDENGRICLDILN--PESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDR 129 (140)
T ss_dssp -------------------TT--B-TTSBBGHGGGT--TTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCH
T ss_pred -------------------cc--ccccccchhhhhh--cccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCH
Confidence 99 6799999999997 34699999999999999999943 4444444 567888999
Q ss_pred HHHHHHHHHHH
Q 020053 171 RALAIKSREAA 181 (332)
Q Consensus 171 ~~y~~kare~~ 181 (332)
+.|.++||+|.
T Consensus 130 ~~f~~~~~~~~ 140 (140)
T PF00179_consen 130 EEFEKKAREWA 140 (140)
T ss_dssp HHHHHHHHHH-
T ss_pred HHHHHHHHHcC
Confidence 99999999873
No 12
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-33 Score=253.03 Aligned_cols=156 Identities=41% Similarity=0.847 Sum_probs=139.7
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM 88 (332)
Q Consensus 9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i 88 (332)
+..|.|||+|||+.|+++|.+++.+.|.++|+++||.+|.||+||||+||.|+.+|.||.+||++||.|+++|
T Consensus 3 ~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT------- 75 (244)
T KOG0894|consen 3 SKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT------- 75 (244)
T ss_pred chHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC-------
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCChhhhhHhhHH
Q 020053 89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKE 168 (332)
Q Consensus 89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~~~~a~~~~~~ 168 (332)
|||||-.+.++||++.++|++.|+|.|+|.+||..|.++|.++ ....++.+-...
T Consensus 76 ------------------------PNGRFktntRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~-~pTtGSI~tS~~ 130 (244)
T KOG0894|consen 76 ------------------------PNGRFKTNTRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTED-SPTTGSIETSDQ 130 (244)
T ss_pred ------------------------CCCceecCceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcC-CCccCcccccHH
Confidence 9999999999999999999999999999999999999999654 334566666678
Q ss_pred hHHHHHHHHHHHHhhhCChhHHHHHHHHHH
Q 020053 169 ERRALAIKSREAAPKFGTPERQKLIDEIHE 198 (332)
Q Consensus 169 dr~~y~~kare~~~kya~~~~~~l~~e~~~ 198 (332)
+++.|++.+..+- +-.+...++.-|+.+
T Consensus 131 ~kr~lA~~SlaFN--~kn~~F~~lFPE~Ve 158 (244)
T KOG0894|consen 131 DKRMLAKSSLAFN--LKNPKFCELFPEVVE 158 (244)
T ss_pred HHHHHHHhhhhhc--cCChHHHHHhHHHHH
Confidence 8999999998876 345555566655554
No 13
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=1.3e-32 Score=235.91 Aligned_cols=137 Identities=39% Similarity=0.793 Sum_probs=124.2
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccccc
Q 020053 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSY 93 (332)
Q Consensus 14 kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~ 93 (332)
|||++|+++|+++++.|+.+.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.| ++||
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~-----~i~H--- 73 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVT-----KIYH--- 73 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeC-----Cccc---
Confidence 79999999999999999999999999999999999999999999999999999999999999999999 8888
Q ss_pred ccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHhH
Q 020053 94 CLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEER 170 (332)
Q Consensus 94 ~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~dr 170 (332)
|| |+.+|.||+++|.. +.|+|+++|++||.+|+++|.+ +++++.+ |+.++++|+
T Consensus 74 -------------------pn--V~~~G~icl~~l~~--~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~ 130 (141)
T cd00195 74 -------------------PN--VDENGKICLSILKT--HGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENR 130 (141)
T ss_pred -------------------CC--CCCCCCCchhhcCC--CCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCH
Confidence 99 67999999999982 2499999999999999999963 3344443 677788999
Q ss_pred HHHHHHHHHHH
Q 020053 171 RALAIKSREAA 181 (332)
Q Consensus 171 ~~y~~kare~~ 181 (332)
+.|.+++++|+
T Consensus 131 ~~f~~~~~~~~ 141 (141)
T cd00195 131 EEFKKKAREWT 141 (141)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
No 14
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.97 E-value=1.1e-31 Score=231.12 Aligned_cols=141 Identities=35% Similarity=0.749 Sum_probs=127.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCC-CceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053 14 KRILQEVKEMQSNPSDDFMSLPLEE-NIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS 92 (332)
Q Consensus 14 kRL~kEl~~l~~~p~~gi~v~p~ed-nl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~ 92 (332)
+||++|+++|+++++.|+.+.+.++ |+++|+++|.||++|||+||+|++.|.||++||++||+|+|.+ ++||
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~-----~i~H-- 73 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFIT-----KIYH-- 73 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeC-----CceE--
Confidence 5999999999999999999998875 9999999999999999999999999999999999999999999 8888
Q ss_pred cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhHHh
Q 020053 93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKKEE 169 (332)
Q Consensus 93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~~d 169 (332)
|| |+.+|.||+++|. .++|+|.+++++||.+|+++|.+ +++++.+ |+.++.++
T Consensus 74 --------------------p~--i~~~G~icl~~l~--~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~ 129 (145)
T smart00212 74 --------------------PN--VDSSGEICLDILK--QEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKN 129 (145)
T ss_pred --------------------ee--ECCCCCEehhhcC--CCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHC
Confidence 99 6789999999996 36899999999999999999964 4445444 67788899
Q ss_pred HHHHHHHHHHHHhhhC
Q 020053 170 RRALAIKSREAAPKFG 185 (332)
Q Consensus 170 r~~y~~kare~~~kya 185 (332)
++.|++++++++.||.
T Consensus 130 ~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 130 REEFKKKAREWTKKYA 145 (145)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999874
No 15
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.4e-32 Score=233.24 Aligned_cols=139 Identities=27% Similarity=0.560 Sum_probs=126.4
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccc
Q 020053 9 KNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLM 88 (332)
Q Consensus 9 ~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i 88 (332)
.....|||++||..|.....+||+++|.++|++.|..+|.||.+|+|||-.|++.+.||.+||++||.|+|+| ++
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFlt-----pc 101 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLT-----PC 101 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeec-----cc
Confidence 3457899999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred cccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCCCCCC--hhh--hhH
Q 020053 89 EHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNG--ALG--SLD 164 (332)
Q Consensus 89 ~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~nP~~--~~~--a~~ 164 (332)
|| || |+..|.|||+||+ +.|+..++|++||++||+|| -.||+ +++ |++
T Consensus 102 ~H----------------------PN--VD~~GnIcLDILk---dKWSa~YdVrTILLSiQSLL-GEPNn~SPLNaqAAe 153 (175)
T KOG0421|consen 102 FH----------------------PN--VDLSGNICLDILK---DKWSAVYDVRTILLSIQSLL-GEPNNSSPLNAQAAE 153 (175)
T ss_pred cC----------------------CC--ccccccchHHHHH---HHHHHHHhHHHHHHHHHHHh-CCCCCCCcchhHHHH
Confidence 99 99 6889999999998 99999999999999999999 55554 455 678
Q ss_pred hhHHhHHHHHHHHHHHH
Q 020053 165 YKKEERRALAIKSREAA 181 (332)
Q Consensus 165 ~~~~dr~~y~~kare~~ 181 (332)
++. |.++|++...+..
T Consensus 154 lW~-d~~eykk~l~~~Y 169 (175)
T KOG0421|consen 154 LWS-DQEEYKKYLEALY 169 (175)
T ss_pred Hhc-CHHHHHHHHHHHh
Confidence 884 9999998776543
No 16
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=211.09 Aligned_cols=145 Identities=27% Similarity=0.529 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhhCCCCCeEE-ecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053 12 AVKRILQEVKEMQSNPSDDFMS-LPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH 90 (332)
Q Consensus 12 a~kRL~kEl~~l~~~p~~gi~v-~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H 90 (332)
+.+||+|||.+|+++....+.- ...+.|++.|++.|. |++-||..|.|+++|.||.+|||+||++.|.| +|||
T Consensus 3 a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~t-----kiYH 76 (153)
T KOG0422|consen 3 APRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKT-----KIYH 76 (153)
T ss_pred hhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeee-----eecc
Confidence 7899999999999998775543 334779999999999 89999999999999999999999999999999 8888
Q ss_pred cccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--hhHhhH
Q 020053 91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG--SLDYKK 167 (332)
Q Consensus 91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~--a~~~~~ 167 (332)
|| |+..|.||+.|+. .|+|.|++++++||.+|..++.+ +|..++. .++.|.
T Consensus 77 ----------------------pN--VDe~gqvClPiis--~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~ 130 (153)
T KOG0422|consen 77 ----------------------PN--VDEKGQVCLPIIS--AENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYI 130 (153)
T ss_pred ----------------------CC--CCCCCceeeeeee--cccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHH
Confidence 99 6788999999998 59999999999999999999954 5556655 467778
Q ss_pred HhHHHHHHHHHHHHhhhCChh
Q 020053 168 EERRALAIKSREAAPKFGTPE 188 (332)
Q Consensus 168 ~dr~~y~~kare~~~kya~~~ 188 (332)
+|+..|.++|.++++||+.+.
T Consensus 131 ~d~~kF~K~Aee~tkK~~e~r 151 (153)
T KOG0422|consen 131 KDPKKFVKNAEEFTKKYSEKR 151 (153)
T ss_pred HCHHHHHHhHHHHHHHhcCcC
Confidence 999999999999999998653
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.9e-28 Score=215.45 Aligned_cols=144 Identities=26% Similarity=0.553 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccccc
Q 020053 12 AVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHK 91 (332)
Q Consensus 12 a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp 91 (332)
.-|||..|+..|... +..+...++++.+++|.+.||.+||||||+|+++|.+|++||++.|+|.|.| +|||
T Consensus 4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvn-----KIfH- 74 (189)
T KOG0416|consen 4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVN-----KIFH- 74 (189)
T ss_pred cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCccccee-----eccC-
Confidence 568999999999875 3467777888999999999999999999999999999999999999999999 9999
Q ss_pred ccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC--CCCChhh--hhHhhH
Q 020053 92 SYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT--NPNGALG--SLDYKK 167 (332)
Q Consensus 92 ~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~--nP~~~~~--a~~~~~ 167 (332)
|||+ ..+|.|||++++ ..|+|.+.+..|+..+.-.|.. ||.++++ |+.++.
T Consensus 75 ---------------------PNID-e~SGsVCLDViN---QtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l 129 (189)
T KOG0416|consen 75 ---------------------PNID-EASGSVCLDVIN---QTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYL 129 (189)
T ss_pred ---------------------CCch-hccCccHHHHHh---hhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHh
Confidence 9986 778999999998 8999999999999887665544 6677776 677888
Q ss_pred HhHHHHHHHHHHHHhhhCChhH
Q 020053 168 EERRALAIKSREAAPKFGTPER 189 (332)
Q Consensus 168 ~dr~~y~~kare~~~kya~~~~ 189 (332)
++++.|++++|++++|||++..
T Consensus 130 ~~~~~Y~~~v~eY~~kYA~~~~ 151 (189)
T KOG0416|consen 130 RDPEEYEEKVKEYIKKYATPEA 151 (189)
T ss_pred cCHHHHHHHHHHHHHHhcChhh
Confidence 9999999999999999999874
No 18
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.8e-28 Score=214.73 Aligned_cols=153 Identities=28% Similarity=0.526 Sum_probs=141.5
Q ss_pred CCcccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccc
Q 020053 1 MAEDRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLL 80 (332)
Q Consensus 1 ma~~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~Fl 80 (332)
|| ...|+..-.+|.|.+|++.|...|++||.+.+.++|+...++.|.||.+|||++|+|+..+.+..|||.+||+-.|+
T Consensus 1 m~-snenlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFl 79 (223)
T KOG0423|consen 1 MA-SNENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFL 79 (223)
T ss_pred CC-cccCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceee
Confidence 66 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCCh
Q 020053 81 TVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGA 159 (332)
Q Consensus 81 T~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~ 159 (332)
| +||| || +..+|.||++.|. .+|+|.+.|+.||+.|.+||.. ||..+
T Consensus 80 T-----KIFH----------------------PN--VaaNGEICVNtLK---kDW~p~LGirHvLltikCLLI~PnPESA 127 (223)
T KOG0423|consen 80 T-----KIFH----------------------PN--VAANGEICVNTLK---KDWNPSLGIRHVLLTIKCLLIEPNPESA 127 (223)
T ss_pred e-----eecc----------------------CC--cccCceehhhhhh---cccCcccchhhHhhhhheeeecCChHHH
Confidence 9 9999 99 7899999999998 8999999999999999999875 88887
Q ss_pred hh--hhHhhHHhHHHHHHHHHHHHhhhCChhHHHHHHHHHHH
Q 020053 160 LG--SLDYKKEERRALAIKSREAAPKFGTPERQKLIDEIHEY 199 (332)
Q Consensus 160 ~~--a~~~~~~dr~~y~~kare~~~kya~~~~~~l~~e~~~~ 199 (332)
++ |-.+..++++.|.+++ .+++|||+.
T Consensus 128 LNEeAGkmLLEnYdeYa~rA-------------Rl~TeIHa~ 156 (223)
T KOG0423|consen 128 LNEEAGKMLLENYDEYARRA-------------RLYTEIHAK 156 (223)
T ss_pred HhHHHHHHHHHhHHHHHHHH-------------HHHHHhhcC
Confidence 77 4566679999999888 678899984
No 19
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.4e-26 Score=201.85 Aligned_cols=143 Identities=24% Similarity=0.476 Sum_probs=122.7
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCeEE-e---cCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccc
Q 020053 9 KNPAVKRILQEVKEMQSNPSDDFMS-L---PLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRC 84 (332)
Q Consensus 9 ~~~a~kRL~kEl~~l~~~p~~gi~v-~---p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~ 84 (332)
.+.+.-||++|+.++. .+++++. . +.+-+..+++++|. |+++.|+||.|.|.+++|+.||+.||+|+|+|
T Consensus 26 ~s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkClt--- 99 (184)
T KOG0420|consen 26 VSAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLT--- 99 (184)
T ss_pred ccHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeee---
Confidence 4568888888888875 4455442 2 22323336999999 99999999999999999999999999999999
Q ss_pred cccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC-CCCChhh--
Q 020053 85 CSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT-NPNGALG-- 161 (332)
Q Consensus 85 ~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~-nP~~~~~-- 161 (332)
+||| || |+.+|.|||+||+ ++|+|..+|.+|+..|+.|+.+ +|+|+++
T Consensus 100 --kV~H----------------------PN--Id~~GnVCLnILR---edW~P~lnL~sIi~GL~~LF~epn~eDpLN~e 150 (184)
T KOG0420|consen 100 --KVYH----------------------PN--IDLDGNVCLNILR---EDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKE 150 (184)
T ss_pred --cccc----------------------CC--cCCcchHHHHHHH---hcCccccchHHHHHHHHHHhccCCCcccccHH
Confidence 9999 99 7899999999998 8999999999999999999976 8889988
Q ss_pred hhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053 162 SLDYKKEERRALAIKSREAAPKFGT 186 (332)
Q Consensus 162 a~~~~~~dr~~y~~kare~~~kya~ 186 (332)
|++...+|++.|+.++|+....|.-
T Consensus 151 AA~~l~~n~e~F~~~Vr~~m~gg~v 175 (184)
T KOG0420|consen 151 AAAVLKSNREGFENNVRRAMSGGCV 175 (184)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCcc
Confidence 7888899999999999998877653
No 20
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.3e-25 Score=189.23 Aligned_cols=119 Identities=25% Similarity=0.581 Sum_probs=109.9
Q ss_pred ccCCCChHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccc
Q 020053 4 DRYNLKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVR 83 (332)
Q Consensus 4 ~~~~m~~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~ 83 (332)
.++-|+..|.+||+|||.+|+.+|+.|+... +.+|+..|.+.+.|-+||.|+|..|.+.+.||+.||+..|.|.|..+
T Consensus 8 ~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~- 85 (161)
T KOG0427|consen 8 SRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP- 85 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC-
Confidence 4667888999999999999999999999877 88999999999999999999999999999999999999999999983
Q ss_pred ccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCCHHHHHHHHHHhCCC
Q 020053 84 CCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPT 154 (332)
Q Consensus 84 ~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~ti~sVL~sI~~lL~~ 154 (332)
...| |. +|+||.|||+||. +.|+|++++.+|.++|.++|.+
T Consensus 86 ---~P~H----------------------PH--iYSNGHICL~iL~---d~WsPAmsv~SvClSIlSMLSS 126 (161)
T KOG0427|consen 86 ---APLH----------------------PH--IYSNGHICLDILY---DSWSPAMSVQSVCLSILSMLSS 126 (161)
T ss_pred ---CCCC----------------------Cc--eecCCeEEEEeec---ccCCcchhhHHHHHHHHHHHcc
Confidence 2233 66 8999999999998 9999999999999999999965
No 21
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.2e-16 Score=168.22 Aligned_cols=117 Identities=28% Similarity=0.492 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccc
Q 020053 13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKS 92 (332)
Q Consensus 13 ~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~ 92 (332)
.+..+.|.+-|..+.+.|+.+...++.|.-..+.|.||.+|||.+|.|.|.|.||++||.+||.+...+
T Consensus 853 ~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s----------- 921 (1101)
T KOG0895|consen 853 AKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHS----------- 921 (1101)
T ss_pred HHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeec-----------
Confidence 445556777777788999999999998888899999999999999999999999999999999988766
Q ss_pred cccccCCceeecccccCCCCCCccccCCCeEEeecCCCC----CCCCCCCCCHHHHHHHHHHhCC-CCC
Q 020053 93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHH----PEHWQPSWSVRTALVALIAFMP-TNP 156 (332)
Q Consensus 93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~----~e~WsP~~ti~sVL~sI~~lL~-~nP 156 (332)
+|+|+| || .|.+|+|||++|+.| +|-|+|+.++.+||++||.|+. +.|
T Consensus 922 ------~~~r~n--------pn--ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p 974 (1101)
T KOG0895|consen 922 ------GGVRLN--------PN--LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP 974 (1101)
T ss_pred ------CceeeC--------cc--cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence 569999 99 899999999999977 4789999999999999999974 344
No 22
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-15 Score=136.57 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=113.7
Q ss_pred HHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCccccccccccccccccc
Q 020053 15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPF--KPPSFMLLTVRCCSLMEHKS 92 (332)
Q Consensus 15 RL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~--~PP~V~FlT~~~~~~i~Hp~ 92 (332)
-|+.|+..+.+++.+||++.|+..|-+.|.++|++ ..+.|.||+|+|+|.+|++||. .-|+|.|.+ .++||.
T Consensus 23 ~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q-----~vfHP~ 96 (258)
T KOG0429|consen 23 ALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQ-----SVFHPL 96 (258)
T ss_pred HHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeec-----cccccc
Confidence 56778888888999999999999999999999996 4558999999999999999994 459999999 899965
Q ss_pred cccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCCCCh------hhhhHh
Q 020053 93 YCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNPNGA------LGSLDY 165 (332)
Q Consensus 93 ~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP~~~------~~a~~~ 165 (332)
.| ..++.+|++-.- ..|.. ...|.+||+.||..+.+ |+.. ..|+.+
T Consensus 97 ic-----------------------p~skeLdl~raf---~eWRk~ehhiwqvL~ylqriF~d-pd~si~kl~N~eAa~l 149 (258)
T KOG0429|consen 97 IC-----------------------PKSKELDLNRAF---PEWRKEEHHIWQVLVYLQRIFYD-PDVSIDKLINPEAAVL 149 (258)
T ss_pred cC-----------------------CCccceeHhhhh---hhhhccccHHHHHHHHHHHHhcC-cccchhhhcChHHHHH
Confidence 55 345789998655 34955 67899999999999943 3321 237889
Q ss_pred hHHhHHHHHHHHHHHHhhh
Q 020053 166 KKEERRALAIKSREAAPKF 184 (332)
Q Consensus 166 ~~~dr~~y~~kare~~~ky 184 (332)
|+++|+.|.++++++++..
T Consensus 150 ~~k~r~ef~~rvqe~vk~s 168 (258)
T KOG0429|consen 150 YKKHRDEFRERVQECVKAS 168 (258)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 9999999999999987653
No 23
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.2e-14 Score=156.41 Aligned_cols=120 Identities=28% Similarity=0.484 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccccccccccc
Q 020053 10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLME 89 (332)
Q Consensus 10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~ 89 (332)
..-.+|+++|++.|.++.+.|+.+.|.+..+...+++|.||.+|||++|+|.|+|.||..||..||.|.++|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt-------- 352 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLT-------- 352 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEee--------
Confidence 346889999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC----CCCCCC-CCHHHHHHHHHHhCCCC
Q 020053 90 HKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP----EHWQPS-WSVRTALVALIAFMPTN 155 (332)
Q Consensus 90 Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~----e~WsP~-~ti~sVL~sI~~lL~~n 155 (332)
++++|+| || .|.+|+||+++|..|. +.|+|. .++.++|.+||.++..+
T Consensus 353 --------~~~~R~n--------PN--lYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~e 405 (1101)
T KOG0895|consen 353 --------GGGVRLN--------PN--LYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILNE 405 (1101)
T ss_pred --------ccceeec--------CC--cccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhccc
Confidence 3478899 99 7999999999998663 579998 89999999999998654
No 24
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.7e-10 Score=99.36 Aligned_cols=106 Identities=28% Similarity=0.445 Sum_probs=82.0
Q ss_pred HHHHHHHHHhhCCCCCeEEecCC--CC--ceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccc
Q 020053 15 RILQEVKEMQSNPSDDFMSLPLE--EN--IFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEH 90 (332)
Q Consensus 15 RL~kEl~~l~~~p~~gi~v~p~e--dn--l~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~H 90 (332)
||.+|+.+=++.--+|....-.+ +| +..|...|.||+.|+||+.+|.++|.+..+||..||.|+|.+ +
T Consensus 9 rlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~t-----k--- 80 (138)
T KOG0896|consen 9 RLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGT-----K--- 80 (138)
T ss_pred hhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEE-----E---
Confidence 79999988877666665444333 23 679999999999999999999999999999999999999999 3
Q ss_pred cccccccCCceeecccccCCCCCCccccCCCeEE---eecCCCCCCCCCCCCCHHHHHHHHHHhC
Q 020053 91 KSYCLCADYGVRTNVCAFFPPQPNGRFETQTKIC---LSISNHHPEHWQPSWSVRTALVALIAFM 152 (332)
Q Consensus 91 p~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~IC---L~iL~~~~e~WsP~~ti~sVL~sI~~lL 152 (332)
+|+ +.+ ...+|.+- +..| .+|+-.++++.+|..++.+|
T Consensus 81 ------------inm-------~gv-n~~~g~Vd~~~i~~L----~~W~~~y~~~~vl~~lr~~m 121 (138)
T KOG0896|consen 81 ------------INM-------NGV-NSSNGVVDPRDITVL----ARWQRSYSIKMVLGQLRKEM 121 (138)
T ss_pred ------------eee-------ccc-ccCCCccCccccchh----hcccccchhhHHHHhhhHHH
Confidence 343 332 23344442 2334 68999999999999998766
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4.6e-06 Score=70.52 Aligned_cols=63 Identities=17% Similarity=0.377 Sum_probs=52.4
Q ss_pred EEEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCCCCC
Q 020053 61 HGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQPSWS 140 (332)
Q Consensus 61 ~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP~~t 140 (332)
-+.+.|+++||+.||.++... +.. -+|-+-.+|.||+.+|. +++|+.+++
T Consensus 14 ll~~~f~~~fp~~ppf~rvv~-----p~~-----------------------~~Gyvl~ggAIcmellt--~qgwssay~ 63 (122)
T KOG0897|consen 14 LLLDIFDDNFPFMPPFPRVVK-----PLE-----------------------DEGYVLEGGAICMELLT--KQGWSSAYE 63 (122)
T ss_pred EeeeecccCCCCCCCcceeee-----ecc-----------------------cCCEEecchhhHHHHHc--cccccchhh
Confidence 467889999999999999888 221 23336678999999998 589999999
Q ss_pred HHHHHHHHHHhCC
Q 020053 141 VRTALVALIAFMP 153 (332)
Q Consensus 141 i~sVL~sI~~lL~ 153 (332)
|+.++++|-..+-
T Consensus 64 Ve~vi~qiaatlV 76 (122)
T KOG0897|consen 64 VERVIMQIAATLV 76 (122)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999884
No 26
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=97.94 E-value=1.8e-05 Score=67.94 Aligned_cols=72 Identities=25% Similarity=0.588 Sum_probs=57.4
Q ss_pred CCCEEEEEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEe---ecCCCCC
Q 020053 56 EGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICL---SISNHHP 132 (332)
Q Consensus 56 eGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL---~iL~~~~ 132 (332)
.|+.|.+.|.||++||..||.|....+.....+ |. ++.+|.||+ ... .
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~------------------------pH--v~~~G~LCl~~~~~~---~ 84 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLL------------------------PH--VESDGKLCLLDEELV---L 84 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCcc------------------------Ce--EcCCCeEEEecCCcc---c
Confidence 789999999999999999999988762110011 44 788999999 444 3
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCC
Q 020053 133 EHWQPSWSVRTALVALIAFMPTNP 156 (332)
Q Consensus 133 e~WsP~~ti~sVL~sI~~lL~~nP 156 (332)
+.|.|...+.++|...+.+|.+.+
T Consensus 85 D~~~P~~~~~~~l~~a~~lL~~~~ 108 (133)
T PF14461_consen 85 DPWDPEGIIADCLERAIRLLEDGL 108 (133)
T ss_pred CccCHHHHHHHHHHHHHHHHHHhh
Confidence 899999999999999999996443
No 27
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=97.38 E-value=0.00038 Score=59.28 Aligned_cols=86 Identities=21% Similarity=0.443 Sum_probs=54.8
Q ss_pred CceEEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCcc
Q 020053 39 NIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGR 116 (332)
Q Consensus 39 nl~~W~v~I~GP~dTpYeGGiF~--l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~ 116 (332)
.+....++|. -.|+|..|. +.|.+|.+||..||.+.+... ..|. ++.+ .+
T Consensus 31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt---~~m~-----------I~~~--------~~-- 82 (121)
T PF05743_consen 31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPT---PSMV-----------IKPS--------HH-- 82 (121)
T ss_dssp EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GC---CTEC-----------CGGC--------CC--
T ss_pred eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCC---CCCC-----------cCCC--------Ce--
Confidence 4555555554 248888885 677789999999999876541 1111 0111 24
Q ss_pred ccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCC
Q 020053 117 FETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP 156 (332)
Q Consensus 117 v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP 156 (332)
++.+|+|.+..| +.|++ ..++.+++..++..+.++|
T Consensus 83 Vd~~G~v~~pyL----~~W~~~~s~L~~lv~~l~~~F~~~p 119 (121)
T PF05743_consen 83 VDSNGRVYLPYL----QNWNPPSSNLVDLVQELQAVFSEEP 119 (121)
T ss_dssp B-TTSBB-SHHH----HT--TTTS-HHHHHHHHHHCCCHS-
T ss_pred ECCCCCEeCchh----ccCCCCCCCHHHHHHHHHHHHhHcC
Confidence 789999999999 57977 8899999999998886543
No 28
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=96.26 E-value=0.0035 Score=55.30 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCcccc
Q 020053 10 NPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGG----------IYHGRIQLPAEYPFKPPSFML 79 (332)
Q Consensus 10 ~~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGG----------iF~l~I~fP~~YP~~PP~V~F 79 (332)
..-..||..||..|.+. +....++=..|.-.=.-+.||-|.|. .|.+++.+|..||..||.+..
T Consensus 23 ~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 45678999999998651 11111111122222223444444443 345667789999999999876
Q ss_pred cc
Q 020053 80 LT 81 (332)
Q Consensus 80 lT 81 (332)
-.
T Consensus 97 Pe 98 (161)
T PF08694_consen 97 PE 98 (161)
T ss_dssp GG
T ss_pred cc
Confidence 54
No 29
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.031 Score=55.45 Aligned_cols=118 Identities=21% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHHHHhhCCCC-CeEEecC--CCCceEEEEEEeCCCCCCCCCCEEE--EEEEcCCCCCCCCCccccc
Q 020053 6 YNLKNPAVKRILQEVKEMQSNPSD-DFMSLPL--EENIFEWQFAIRGPGDTEFEGGIYH--GRIQLPAEYPFKPPSFMLL 80 (332)
Q Consensus 6 ~~m~~~a~kRL~kEl~~l~~~p~~-gi~v~p~--ednl~~W~v~I~GP~dTpYeGGiF~--l~I~fP~~YP~~PP~V~Fl 80 (332)
+|-...+.+.+...+.....-.+. ..+...+ ..+++...++|. .+|.|-.|. +.|.+.+.||+.||.+...
T Consensus 15 ~~~~~~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~Vn 90 (365)
T KOG2391|consen 15 YNYKDLTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVN 90 (365)
T ss_pred ccchhhHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEec
Confidence 334444555555544444432222 2222322 235665555554 468888876 5677899999999988655
Q ss_pred ccccc-ccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhCCCCC
Q 020053 81 TVRCC-SLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFMPTNP 156 (332)
Q Consensus 81 T~~~~-~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL~~nP 156 (332)
...+- .++ | -+ |+.+|+|.|..|. .|.+ +.++..++.-|.+.+.++|
T Consensus 91 PT~~M~ik~-~----------------------~h--Vd~nG~V~LPYLh----~W~~pssdLv~Liq~l~a~f~~~p 139 (365)
T KOG2391|consen 91 PTSTMIIKV-H----------------------EH--VDPNGKVYLPYLH----NWDPPSSDLVGLIQELIAAFSEDP 139 (365)
T ss_pred CCchhhhHH-h----------------------hc--cCCCCeEechhhc----cCCCccchHHHHHHHHHHHhcCCC
Confidence 42110 111 2 33 7899999999995 7965 7788888888888885543
No 30
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.18 E-value=0.13 Score=41.23 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053 14 KRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLT 81 (332)
Q Consensus 14 kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~G--P~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT 81 (332)
.+...|+..|+.--++.+ ......+...+.+.+.+ ...+.-....+++.|.||++||..+|.|.+..
T Consensus 4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~ 72 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLES 72 (113)
T ss_dssp HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEE
T ss_pred HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEc
Confidence 467788888887555544 22334455566777732 23344455689999999999999999998777
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.11 Score=45.43 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCE----------EEEEEEcCCCCCCCCCccccc
Q 020053 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGI----------YHGRIQLPAEYPFKPPSFMLL 80 (332)
Q Consensus 11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGi----------F~l~I~fP~~YP~~PP~V~Fl 80 (332)
.=+.||..||+.|... +.-..++-..|.-.=.-+.+|-|-|.. |.+++.+|-.||...|.+..-
T Consensus 27 ~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeialp 100 (167)
T KOG3357|consen 27 LWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIALP 100 (167)
T ss_pred HHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccccc
Confidence 3468999999998652 111222223444444557777776643 456677899999999988654
Q ss_pred c
Q 020053 81 T 81 (332)
Q Consensus 81 T 81 (332)
.
T Consensus 101 e 101 (167)
T KOG3357|consen 101 E 101 (167)
T ss_pred c
Confidence 4
No 32
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=93.11 E-value=0.39 Score=38.23 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=27.4
Q ss_pred EEEEEEeCCCC-CCCCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053 42 EWQFAIRGPGD-TEFEGGIYHGRIQLPAEYPFKPPSFMLLT 81 (332)
Q Consensus 42 ~W~v~I~GP~d-TpYeGGiF~l~I~fP~~YP~~PP~V~FlT 81 (332)
.+.+.+....+ +.-..-.+.+.|.||.+||..+|.+.+..
T Consensus 24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~ 64 (107)
T smart00591 24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN 64 (107)
T ss_pred EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence 45555542221 12334568899999999999999988876
No 33
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=91.74 E-value=1 Score=38.89 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=60.7
Q ss_pred CeEEecCCCCceEEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccc
Q 020053 30 DFMSLPLEENIFEWQFAIRG--PGDTEFEGGIYHGRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCA 107 (332)
Q Consensus 30 gi~v~p~ednl~~W~v~I~G--P~dTpYeGGiF~l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~ 107 (332)
|+....+.+.-..|.+ |.| -+.+.|....-.+-|.+|..||..+|.+.+..+. -.+.+++.+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~---------L~~~~G~~i------ 76 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPP---------LKLADGGPI------ 76 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCc---------eEccCCCcC------
Confidence 5555555455556655 665 3456699999999999999999999988777731 111111111
Q ss_pred cCCCCCCc---cccCCCeEEeecCCCCCCCCCCCC-CHHHHHHHHHHhC
Q 020053 108 FFPPQPNG---RFETQTKICLSISNHHPEHWQPSW-SVRTALVALIAFM 152 (332)
Q Consensus 108 ~~h~~PNv---~v~~~G~ICL~iL~~~~e~WsP~~-ti~sVL~sI~~lL 152 (332)
||- .-.-.|+.=--...+ +..|.|.. +|.+.|.-|...|
T Consensus 77 -----P~~~~~~~~~~G~~wQrWSRH-~~~W~P~~D~l~T~l~~v~~~L 119 (122)
T PF14462_consen 77 -----PNAAEVTQTFDGRTWQRWSRH-NNPWRPGVDDLWTHLARVEHAL 119 (122)
T ss_pred -----CchhcchhhcCCeeeeeecCC-CCCCCCCCCcHHHHHHHHHHHH
Confidence 210 011224443334443 46788854 6888877777655
No 34
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=84.98 E-value=6.6 Score=35.27 Aligned_cols=74 Identities=23% Similarity=0.428 Sum_probs=50.6
Q ss_pred CCCEEE---EEEEcCCCCCCCCCccccccccccccccccccccccCCceeecccccCCCCCCccccCCCeEEeecCCCCC
Q 020053 56 EGGIYH---GRIQLPAEYPFKPPSFMLLTVRCCSLMEHKSYCLCADYGVRTNVCAFFPPQPNGRFETQTKICLSISNHHP 132 (332)
Q Consensus 56 eGGiF~---l~I~fP~~YP~~PP~V~FlT~~~~~~i~Hp~~~~~~~~~~~~n~~~~~h~~PNv~v~~~G~ICL~iL~~~~ 132 (332)
.+|+.. +.|.|+.+||+.+|.|.++..+|-...-| .|+-. ...-..+||---..
T Consensus 48 ~~gir~~E~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH--------------------~~~~~-~~~p~~lCl~~~~~-- 104 (162)
T PF14457_consen 48 PVGIRRVERVAIVFPPDSPLSAPEVPALRKDFPGNLPH--------------------QNPGP-EGEPVSLCLYEGPW-- 104 (162)
T ss_pred CCCccccceEEEEecCCCCCCCccchhhHhhCCCCCCc--------------------cCCCC-CCCCccceEecCCH--
Confidence 345554 56899999999999887777444222222 11221 12336899975542
Q ss_pred CCCCCCCCHHHHHHHHHHhC
Q 020053 133 EHWQPSWSVRTALVALIAFM 152 (332)
Q Consensus 133 e~WsP~~ti~sVL~sI~~lL 152 (332)
..|.+.++++.+|..|..-|
T Consensus 105 ~e~~~~~g~~~~l~rl~~Wl 124 (162)
T PF14457_consen 105 SEWRPSWGPEGFLDRLFDWL 124 (162)
T ss_pred HHhhhccCHHHHHHHHHHHH
Confidence 67999999999999998887
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=71.79 E-value=7.6 Score=38.02 Aligned_cols=60 Identities=22% Similarity=0.430 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccc
Q 020053 11 PAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPAEYPFKPPSFML 79 (332)
Q Consensus 11 ~a~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF~l~I~fP~~YP~~PP~V~F 79 (332)
....+|.+|+.++..+....+ -.++++...++.+. |+ ...-.++|.+|.+||.++|.+..
T Consensus 99 ~~ys~ll~EIe~IGW~kl~~i---~~d~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~ 158 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKLVQI---QFDDDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSL 158 (291)
T ss_dssp GGC-CHHHHHHHHHCGCCEEE---EE-CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS
T ss_pred HHHHHHHHHHHHhccccceEE---ecCCCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeC
Confidence 355688889998876553221 13678888888888 33 24667899999999999997543
No 36
>PF12669 P12: Virus attachment protein p12 family
Probab=64.79 E-value=5.6 Score=29.89 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHhcCCc
Q 020053 301 WAAVGLTIAILVLL-LKKFMKSNGHG 325 (332)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~~~~~~~~ 325 (332)
|++.++.+++++++ +++|.|..--|
T Consensus 2 iII~~Ii~~~~~~v~~r~~~k~~K~G 27 (58)
T PF12669_consen 2 IIIGIIILAAVAYVAIRKFIKDKKKG 27 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666666654 59999765433
No 37
>COG3765 WzzB Chain length determinant protein [Cell envelope biogenesis, outer membrane]
Probab=56.81 E-value=18 Score=36.49 Aligned_cols=42 Identities=24% Similarity=0.299 Sum_probs=30.9
Q ss_pred cCCCCCcccccCCCccchh---HHHHHHHHHHHHHHHHHHHHHhc
Q 020053 281 QLQPKPETRVQKPADDRLF---TWAAVGLTIAILVLLLKKFMKSN 322 (332)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 322 (332)
--.++|.+++++-.--|-+ -|++||+.++.++.|+|.|+|++
T Consensus 300 RYl~~P~~Pvkrd~PrrA~ilil~~LiGgm~g~g~vL~R~~lk~~ 344 (347)
T COG3765 300 RYLQKPTLPVKRDSPRRAIILILGALIGGMLGAGVVLLRNALKKY 344 (347)
T ss_pred EecCCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444677766653334555 34889999999999999999986
No 38
>PF01307 Plant_vir_prot: Plant viral movement protein; InterPro: IPR001896 This family of membrane/coat proteins are found in a number of different ssRNA plant virus families that include Potexvirus, Hordeivirus and Carlavirus.
Probab=50.40 E-value=14 Score=30.95 Aligned_cols=40 Identities=28% Similarity=0.572 Sum_probs=29.6
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHH--------HHhcCCccccccCC
Q 020053 293 PADDRLFTWAAVGLTIAILVLLLKKF--------MKSNGHGTVFMDGS 332 (332)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 332 (332)
|..-+.+..+|+|+++|+++.++++- +-+--||+.|-||.
T Consensus 5 pd~sk~~l~~aiG~~lal~i~~ltr~tlPhvGDniH~LPhGG~YrDGT 52 (104)
T PF01307_consen 5 PDYSKSYLAAAIGVSLALIIFTLTRSTLPHVGDNIHSLPHGGRYRDGT 52 (104)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCC
Confidence 44456677799999999999888762 22335889999983
No 39
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=48.75 E-value=43 Score=37.35 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCCCCCCEE-EEEEEcCCCCCCC-CCccccccc
Q 020053 13 VKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIY-HGRIQLPAEYPFK-PPSFMLLTV 82 (332)
Q Consensus 13 ~kRL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTpYeGGiF-~l~I~fP~~YP~~-PP~V~FlT~ 82 (332)
..-|.+|+.-+-..- ..+.+.-.+-.-..-.+.+.||-.-. .|-+| ++.|.||.+||.+ +|+++|..+
T Consensus 422 pQnLgeE~S~Ig~k~-~nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 422 PQNLGEEFSLIGVKI-RNVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhHHhHHhHhhccc-cccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 344556665553321 22222212222335566677765432 44455 7899999999986 699999873
No 40
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=47.40 E-value=51 Score=31.23 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCCCeEEecCCCCceEEEEEEeCCCCCC---CCCCEEEEEEEcCCCCCCCCCcccccc
Q 020053 15 RILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPGDTE---FEGGIYHGRIQLPAEYPFKPPSFMLLT 81 (332)
Q Consensus 15 RL~kEl~~l~~~p~~gi~v~p~ednl~~W~v~I~GP~dTp---YeGGiF~l~I~fP~~YP~~PP~V~FlT 81 (332)
-..+|+.-|.+--++.+... .+.+...+.+.|. ...+- |.| .+.+.+.++.+||..+|.+.+..
T Consensus 6 eQe~E~EaLeSIY~de~~~i-~~~~~~~f~v~iq-~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~~~ 72 (215)
T KOG4018|consen 6 EQEEELEALESIYPDEFKHI-NSEDPPIFEVTIQ-YEEGENDEPKG-SFILVFSLTENYPDEAPLIEAFE 72 (215)
T ss_pred HHHHHHHHHHHhccchhhhh-hccCCccceeeee-cccccCCCccc-cEEEEEEccCCCCCCCcceeccc
Confidence 34567777776555544211 1223333677776 33222 333 78899999999999999984433
No 41
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=42.81 E-value=29 Score=24.63 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 020053 298 LFTWAAVGLTIAILVLLL 315 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~ 315 (332)
.+-|.++|+++.+++.++
T Consensus 5 ~yVW~sYg~t~~~l~~l~ 22 (46)
T PF04995_consen 5 FYVWSSYGVTALVLAGLI 22 (46)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 357999999988776654
No 42
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=38.76 E-value=36 Score=24.07 Aligned_cols=18 Identities=33% Similarity=0.757 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 020053 298 LFTWAAVGLTIAILVLLL 315 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~ 315 (332)
.+-|.++|+++..++.|+
T Consensus 6 ~yVW~sYg~t~l~l~~li 23 (45)
T TIGR03141 6 FYVWLAYGITALVLAGLI 23 (45)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467999999988776554
No 43
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=36.89 E-value=2.5e+02 Score=25.47 Aligned_cols=27 Identities=19% Similarity=0.442 Sum_probs=16.9
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHH
Q 020053 293 PADDRLFTWAAVGLTIAILVLLLKKFMK 320 (332)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (332)
|.--|.| ..++|+++.++++++=|.++
T Consensus 92 ~~l~R~~-~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 92 PMLKRAL-YVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred cchhhhH-HHHHHHHHHHHHHHHHHHHh
Confidence 4455787 56677777766665555543
No 44
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=36.82 E-value=30 Score=30.14 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCccccccC
Q 020053 309 AILVLLLKKFMKSNGHGTVFMDG 331 (332)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
..+.-++.+|++++|+|.|++||
T Consensus 61 ~~l~~~i~~fl~~~~~~vViiD~ 83 (136)
T PF05763_consen 61 HKLLDTIVRFLKENGNGVVIIDG 83 (136)
T ss_pred HHHHHHHHHHHHhCCCcEEEEec
Confidence 35566788999999999999997
No 45
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=35.26 E-value=60 Score=32.82 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCcccccCCCccchh---HHHHHHHHHHHHHHHHHHHHHhc
Q 020053 285 KPETRVQKPADDRLF---TWAAVGLTIAILVLLLKKFMKSN 322 (332)
Q Consensus 285 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 322 (332)
.|+.++++=.--|.| -|+.+|+.+++++.|+|.|+++.
T Consensus 326 ~p~~P~~rd~Pkr~lIlvl~~llG~~lg~~~vL~r~~~r~~ 366 (377)
T PRK10381 326 SPSLPVKKDGPGKALIVILAALIGGMLACGFVLLRHAMRSR 366 (377)
T ss_pred CCcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444332223655 45899999999999999999875
No 46
>PTZ00234 variable surface protein Vir12; Provisional
Probab=33.23 E-value=2.9e+02 Score=28.77 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=24.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 020053 294 ADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVF 328 (332)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (332)
.|-..+.=+|+|++|--.++.|==|-+|+|+..-|
T Consensus 359 ~dSn~~rniim~~ailGtifFlfyyn~ss~lks~~ 393 (433)
T PTZ00234 359 LKSEYFRHSIVGASIIGVLVFLFFFFKSTPIRSQT 393 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhcccchhccc
Confidence 34555666888888866666666778888876543
No 47
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=32.50 E-value=90 Score=33.45 Aligned_cols=13 Identities=8% Similarity=0.258 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHhC
Q 020053 140 SVRTALVALIAFM 152 (332)
Q Consensus 140 ti~sVL~sI~~lL 152 (332)
.+.+||..+..++
T Consensus 218 gLhHv~tElKeii 230 (574)
T PF07462_consen 218 GLHHVFTELKEII 230 (574)
T ss_pred hHHHHHHHHHHHH
Confidence 3555666665555
No 48
>TIGR02929 anfG_nitrog Fe-only nitrogenase, delta subunit. Nitrogenase, also called dinitrogenase, is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfG, represents the delta subunit of the Fe-only alternative nitrogenase. It is homologous to VnfG, the delta subunit of the V-containing (vanadium) nitrogenase.
Probab=32.46 E-value=1.9e+02 Score=24.75 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCC-CCChhhhhHhhHHhHHHHHHHHHH---HHhhhCChhHHHHHHHHHHHhh
Q 020053 131 HPEHWQPSWSVRTALVALIAFMPTN-PNGALGSLDYKKEERRALAIKSRE---AAPKFGTPERQKLIDEIHEYML 201 (332)
Q Consensus 131 ~~e~WsP~~ti~sVL~sI~~lL~~n-P~~~~~a~~~~~~dr~~y~~kare---~~~kya~~~~~~l~~e~~~~~~ 201 (332)
|+..|...-.++.||.....+|... |....++-.+|=-|.-.++...++ |.......+.+.||+.+|+.+.
T Consensus 18 ~SRsWDRe~q~egIl~kt~~lL~GE~~~~~Tp~Dr~y~~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~rl~ 92 (109)
T TIGR02929 18 NSRGWDREIQNEGILMKTRQILCGENAREDTSADRCYWVDAVTLAGAYKRRFPWLEDMTKDEIKTLMQALHEKMD 92 (109)
T ss_pred cccchhHHHhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999754 444344433333555555554444 5555556677788888887654
No 49
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=31.95 E-value=40 Score=26.95 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHH
Q 020053 301 WAAVGLTIAILVLL 314 (332)
Q Consensus 301 ~~~~~~~~~~~~~~ 314 (332)
|.++|+++++++||
T Consensus 74 ~~svgiAagvG~ll 87 (94)
T PF05957_consen 74 WQSVGIAAGVGFLL 87 (94)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666666666655
No 50
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=30.49 E-value=54 Score=21.49 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=9.4
Q ss_pred CCCccchhHHHHHHHHHHHHHHH
Q 020053 292 KPADDRLFTWAAVGLTIAILVLL 314 (332)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~ 314 (332)
++...+||||+=+=++++|+.++
T Consensus 9 ~~~~~~GFTLiEllVa~~I~~il 31 (31)
T PF13544_consen 9 RRRRQRGFTLIELLVAMAILAIL 31 (31)
T ss_dssp ---------HHHHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHHHC
Confidence 34566999997776666666553
No 51
>PF14460 Prok-E2_D: Prokaryotic E2 family D
Probab=30.30 E-value=28 Score=31.31 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=12.5
Q ss_pred CCCccccCCCeEEeecCC
Q 020053 112 QPNGRFETQTKICLSISN 129 (332)
Q Consensus 112 ~PNv~v~~~G~ICL~iL~ 129 (332)
.+| |+.+|+||+.-..
T Consensus 97 f~N--V~~~g~vC~G~~~ 112 (175)
T PF14460_consen 97 FFN--VYSNGSVCWGNNS 112 (175)
T ss_pred ccc--cCCCCcEeeCCCc
Confidence 378 6889999997643
No 52
>PF10215 Ost4: Oligosaccaryltransferase ; InterPro: IPR018943 Ost4 is a very short, approximately 30 residues, enzyme found from fungi to vertebrates. It is a member of the ER oligosaccaryltansferase complex, 2.4.1.119 from EC, that catalyses the asparagine-linked glycosylation of proteins. It appears to be an integral membrane protein that mediates the en bloc transfer of a pre-assembled high-mannose oligosaccharide onto asparagine residues of nascent polypeptides as they enter the lumen of the rough endoplasmic reticulum. ; PDB: 1RKL_A 2LAT_A.
Probab=29.62 E-value=73 Score=21.86 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=16.0
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 020053 295 DDRLFTWAAVGLTIAILVLLL 315 (332)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~ 315 (332)
+|--|.-+|+.|++++++|++
T Consensus 3 sD~qL~~lan~lG~~~~~LIV 23 (35)
T PF10215_consen 3 SDVQLYTLANFLGVAAMVLIV 23 (35)
T ss_dssp SSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 566677788889988887754
No 53
>TIGR02930 vnfG_nitrog V-containing nitrogenase, delta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfG, represents the delta subunit of the V-containing (vanadium) alternative nitrogenase. It is homologous to AnfG, the delta subunit of the Fe-only nitrogenase.
Probab=29.02 E-value=2.2e+02 Score=24.30 Aligned_cols=71 Identities=8% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCCC-CCChhhhhHhhHHhHHHHHHHHHH---HHhhhCChhHHHHHHHHHHHhh
Q 020053 131 HPEHWQPSWSVRTALVALIAFMPTN-PNGALGSLDYKKEERRALAIKSRE---AAPKFGTPERQKLIDEIHEYML 201 (332)
Q Consensus 131 ~~e~WsP~~ti~sVL~sI~~lL~~n-P~~~~~a~~~~~~dr~~y~~kare---~~~kya~~~~~~l~~e~~~~~~ 201 (332)
|...|...-.++.||.....+|... |....++-.+|=-|.-.++...++ |.......+...||+.+++.+.
T Consensus 18 ~SRsWDRe~q~egIl~~t~~ll~GE~~~~~Tp~Dr~yy~DAv~la~~~k~rfpW~~~~~kdei~~l~~~lk~rl~ 92 (109)
T TIGR02930 18 FSRTWDREENIEGVMTMAGKLLNGEKINLETPMDKLFYADAKNLASDIKERFPWISELDKDQILELVESVKKRLV 92 (109)
T ss_pred cccchhHHHhHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999754 444344433333555555555544 4555556677778888887554
No 54
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=28.62 E-value=71 Score=24.91 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=10.5
Q ss_pred HHHHHHHHhcCCcc
Q 020053 313 LLLKKFMKSNGHGT 326 (332)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (332)
+|.++|.|.+|+.+
T Consensus 36 yL~~~~v~~~g~~g 49 (66)
T PF07438_consen 36 YLFDQFVRDNGYEG 49 (66)
T ss_pred HHHHHHhhccCcch
Confidence 46678888888765
No 55
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.99 E-value=40 Score=30.28 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCcccccc
Q 020053 314 LLKKFMKSNGHGTVFMD 330 (332)
Q Consensus 314 ~~~~~~~~~~~~~~~~~ 330 (332)
.+-.|++|-|||+|||-
T Consensus 60 rci~fA~swgyGgvy~~ 76 (167)
T COG4333 60 RCISFAKSWGYGGVYMA 76 (167)
T ss_pred HHHHHHhhcccCcEEee
Confidence 34468999999999984
No 56
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=26.66 E-value=77 Score=24.64 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020053 302 AAVGLTIAILVLLLKKF 318 (332)
Q Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (332)
+.+|+.+++++.++|.|
T Consensus 66 ~~~Gl~lgi~~~~~re~ 82 (82)
T PF13807_consen 66 LFLGLILGIGLAFLREM 82 (82)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 56788888888888864
No 57
>COG4499 Predicted membrane protein [Function unknown]
Probab=25.93 E-value=50 Score=34.02 Aligned_cols=21 Identities=29% Similarity=0.679 Sum_probs=17.2
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 020053 295 DDRLFTWAAVGLTIAILVLLL 315 (332)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~ 315 (332)
-=+.|.|++|||+|+++.+++
T Consensus 216 k~~ifk~~giGliillvl~li 236 (434)
T COG4499 216 KYTIFKYFGIGLIILLVLLLI 236 (434)
T ss_pred cceehhhHHHhHHHHHHHHHH
Confidence 448899999999988877665
No 58
>PRK10404 hypothetical protein; Provisional
Probab=25.69 E-value=54 Score=27.29 Aligned_cols=14 Identities=21% Similarity=0.688 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHH
Q 020053 300 TWAAVGLTIAILVL 313 (332)
Q Consensus 300 ~~~~~~~~~~~~~~ 313 (332)
+|.+||++++++++
T Consensus 80 Pw~avGiaagvGll 93 (101)
T PRK10404 80 PWQGIGVGAAVGLV 93 (101)
T ss_pred cHHHHHHHHHHHHH
Confidence 37666666555544
No 59
>TIGR03737 PRTRC_B PRTRC system protein B. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This protein family is designated protein B.
Probab=25.48 E-value=41 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=19.5
Q ss_pred CCCccccCCCeEEeecCCCCCCCCCC-CCCHHHHHHHHHHhC
Q 020053 112 QPNGRFETQTKICLSISNHHPEHWQP-SWSVRTALVALIAFM 152 (332)
Q Consensus 112 ~PNv~v~~~G~ICL~iL~~~~e~WsP-~~ti~sVL~sI~~lL 152 (332)
++| |+.+|+||+.-.. .| ..++.+ +......+
T Consensus 138 ffN--V~~~G~VC~G~~~------~P~~~~~~~-i~~we~~F 170 (228)
T TIGR03737 138 LFN--VWSNGEICAGNAR------LPDRPTVAN-ISAWEDAF 170 (228)
T ss_pred cCc--cCCCCeEeeCCCc------CCCCcCHHH-HHHHHHHH
Confidence 378 7889999996543 23 345555 44444443
No 60
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=24.93 E-value=1.9e+02 Score=23.05 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=26.2
Q ss_pred HHHHHHhCCCCCCChhhhhHhhHHhHHHHHHHHHHHHhhhCC
Q 020053 145 LVALIAFMPTNPNGALGSLDYKKEERRALAIKSREAAPKFGT 186 (332)
Q Consensus 145 L~sI~~lL~~nP~~~~~a~~~~~~dr~~y~~kare~~~kya~ 186 (332)
++.+.-.|.+.|+|.. |..++.+-.++..+..+++.++||.
T Consensus 15 ~~dl~LyLDTHP~d~~-Al~~y~~~~~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 15 VVDLNLYLDTHPDDQE-ALEYYNEYSKQRKQLKKEYEKRYGP 55 (78)
T ss_pred HHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455556777888765 4455556666666666777777773
No 61
>PF03139 AnfG_VnfG: Vanadium/alternative nitrogenase delta subunit; InterPro: IPR004349 The nitrogenase complex 1.18.6.1 from EC catalyses the conversion of molecular nitrogen to ammonia (nitrogen fixation). The complex is hexameric, consisting of 2 alpha, 2 beta, and 2 delta subunits. This family represents the delta subunit of a group of nitrogenases that do not utilise molybdenum (Mo) as a cofactor, but instead use either vanadium (V nitrogenases), or iron (alternative nitrogenases). ; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0055114 oxidation-reduction process
Probab=24.84 E-value=2.8e+02 Score=23.79 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCC-CChhhhhHhhHHhHHHHHHHHHH---HHhhhCChhHHHHHHHHHHHhh
Q 020053 130 HHPEHWQPSWSVRTALVALIAFMPTNP-NGALGSLDYKKEERRALAIKSRE---AAPKFGTPERQKLIDEIHEYML 201 (332)
Q Consensus 130 ~~~e~WsP~~ti~sVL~sI~~lL~~nP-~~~~~a~~~~~~dr~~y~~kare---~~~kya~~~~~~l~~e~~~~~~ 201 (332)
+|+..|...-.++.||.....+|...| ....++-.+|=-|...++...++ |.......+.+.||+.+|+.+.
T Consensus 20 F~SR~WDRe~qnegIL~kt~qlL~gE~v~~eTp~Drcyw~DAv~la~~~k~rfpW~~~~~k~ei~~lm~~lk~rld 95 (112)
T PF03139_consen 20 FHSRSWDREEQNEGILNKTTQLLCGEPVDLETPADRCYWVDAVCLAEAFKERFPWINEMSKDEIKSLMQGLKERLD 95 (112)
T ss_pred hcccchhHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHcCcHHHHCCHHHHHHHHHHHHHHHh
Confidence 345899999999999999999997644 33334433333454444444443 4555556677788888887654
No 62
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=23.80 E-value=79 Score=25.28 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=19.1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHH
Q 020053 294 ADDRLFTWAAVGLTIAILVLLLKK 317 (332)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~ 317 (332)
.-||.+-|+++++.++.++.+++|
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYILWR 90 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhh
Confidence 357888888888888888877765
No 63
>PRK11053 dihydropteridine reductase; Provisional
Probab=23.71 E-value=1e+02 Score=27.87 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccccccC
Q 020053 298 LFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMDG 331 (332)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (332)
...|+..+..+|+.-|+|. +++-|+|+++|.|
T Consensus 135 ~~~~~~~~~~ia~~~lmLa--A~~~Glgs~~i~g 166 (217)
T PRK11053 135 LQHWMEKQVYLALGNLLLG--AAALGIDATPIEG 166 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHcCCCCCCcCC
Confidence 3467788888888888775 7899999999976
No 64
>PRK10132 hypothetical protein; Provisional
Probab=23.13 E-value=64 Score=27.20 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHH
Q 020053 301 WAAVGLTIAILVL 313 (332)
Q Consensus 301 ~~~~~~~~~~~~~ 313 (332)
|.+||++++++++
T Consensus 87 w~svgiaagvG~l 99 (108)
T PRK10132 87 WCSVGTAAAVGIF 99 (108)
T ss_pred HHHHHHHHHHHHH
Confidence 6555555544443
No 65
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=21.57 E-value=51 Score=24.79 Aligned_cols=25 Identities=28% Similarity=0.679 Sum_probs=16.9
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCCC
Q 020053 134 HWQPSWSVRTALVALIAFMPTNPNG 158 (332)
Q Consensus 134 ~WsP~~ti~sVL~sI~~lL~~nP~~ 158 (332)
+|+|.++|+++|.........||++
T Consensus 37 gW~p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp ----SSSHHHHHHHHHHHHHHSTTT
T ss_pred CCCcCCCHHHHHHHHHHHHHHCcCC
Confidence 6999999999999887776567753
No 66
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=21.10 E-value=3e+02 Score=27.74 Aligned_cols=21 Identities=24% Similarity=0.051 Sum_probs=15.8
Q ss_pred chhHH-HHHHHHHHHHHHHHHH
Q 020053 297 RLFTW-AAVGLTIAILVLLLKK 317 (332)
Q Consensus 297 ~~~~~-~~~~~~~~~~~~~~~~ 317 (332)
-+|++ +|+|..|+.++-|.++
T Consensus 327 i~fPi~ii~~a~ip~lfcl~~~ 348 (355)
T KOG3593|consen 327 IAFPISIIGGAFIPDLFCLCAL 348 (355)
T ss_pred chhhHHHHHhhhhHHHHHHHHh
Confidence 34444 7888999999888775
No 67
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=20.89 E-value=32 Score=31.18 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020053 302 AAVGLTIAILVLLLKKF 318 (332)
Q Consensus 302 ~~~~~~~~~~~~~~~~~ 318 (332)
.|||+..+|+++++||.
T Consensus 140 laIG~igGIIivvvRKm 156 (162)
T PF05808_consen 140 LAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp -----------------
T ss_pred HHHHHHhheeeEEeehh
Confidence 45666667777888885
Done!