Query 020054
Match_columns 332
No_of_seqs 121 out of 132
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 11:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu1_A DSRBP-ZFA, RNA binding 96.5 0.0016 5.6E-08 54.2 3.4 37 32-68 90-126 (127)
2 1zr9_A Zinc finger protein 593 94.9 0.012 4.1E-07 49.8 2.5 40 30-69 45-84 (124)
3 1zu1_A DSRBP-ZFA, RNA binding 94.1 0.021 7.2E-07 47.4 2.4 35 35-69 32-66 (127)
4 3eph_A TRNA isopentenyltransfe 94.1 0.025 8.7E-07 56.0 3.2 37 34-70 359-401 (409)
5 2yrk_A Zinc finger homeobox pr 83.7 0.67 2.3E-05 34.2 2.6 35 35-69 13-47 (55)
6 3cw1_L U1 small nuclear ribonu 80.7 0.91 3.1E-05 35.5 2.6 32 36-67 4-37 (77)
7 4dgw_A PRE-mRNA-splicing facto 74.6 1.2 4E-05 44.2 2.0 39 31-69 288-326 (402)
8 2xus_A Breast cancer metastasi 32.1 1E+02 0.0034 22.1 5.3 32 259-291 16-47 (49)
9 2cs3_A Protein C14ORF4, MY039 20.9 41 0.0014 26.8 1.7 19 28-46 8-26 (93)
10 3gs2_B Chromobox protein homol 20.4 34 0.0012 22.2 1.0 10 204-213 19-28 (30)
No 1
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=96.47 E-value=0.0016 Score=54.22 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=33.9
Q ss_pred CCCCceeecccccccCcchhHHhhCChHHHHHHHHHh
Q 020054 32 EFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIK 68 (332)
Q Consensus 32 ~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk 68 (332)
..+.+.|.+|++.+.++..+..|+.||.|+.++.++.
T Consensus 90 ~~~~~~C~~C~~~f~s~~~~~~H~~gk~H~~~~~~~~ 126 (127)
T 1zu1_A 90 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE 126 (127)
T ss_dssp CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred CCCCeEcCCCCCEeCCHHHHHHHHCCHHHHHHHHHhc
Confidence 4678899999999999999999999999999998763
No 2
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4
Probab=94.88 E-value=0.012 Score=49.77 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=36.4
Q ss_pred cCCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054 30 YNEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 30 Yn~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (332)
.+..|+..|..|+....+++.+..|.+||.|+.++..++.
T Consensus 45 ~tGekpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~ 84 (124)
T 1zr9_A 45 LPGGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV 84 (124)
T ss_dssp SGGGGCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred CCCCcceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence 3456899999999999999999999999999999999874
No 3
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4
Probab=94.14 E-value=0.021 Score=47.44 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.4
Q ss_pred CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (332)
.+.|.+|++.+.+++.-.+|..|+.|+.+|..+..
T Consensus 32 ~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~ 66 (127)
T 1zu1_A 32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMA 66 (127)
T ss_dssp SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhc
Confidence 48999999999999999999999999999987655
No 4
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.09 E-value=0.025 Score=56.04 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=31.9
Q ss_pred CCceeecccc------cccCcchhHHhhCChHHHHHHHHHhhh
Q 020054 34 DQPVCRVCDV------VLKSDSQWDAHQASRKHHEAIKNIKAG 70 (332)
Q Consensus 34 GqL~C~lC~~------~vksEslW~aH~~Sk~Hr~~~~~lk~~ 70 (332)
-+-+|-+|+. ++-.|--|..|+.|+.||.++.+.++-
T Consensus 359 ~~~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~ 401 (409)
T 3eph_A 359 THYTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQ 401 (409)
T ss_dssp CEEEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred cceeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3458999997 788889999999999999999887653
No 5
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=83.66 E-value=0.67 Score=34.22 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=29.3
Q ss_pred CceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054 35 QPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 35 qL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (332)
++.|.+|++.--+-.--..||.|++|-.+|..+-.
T Consensus 13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v~ 47 (55)
T 2yrk_A 13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRETVG 47 (55)
T ss_dssp CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTTC
T ss_pred CccccccCcccccccchhhhhccHHHHHHHHHHHH
Confidence 48999999987766778899999999999876544
No 6
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=80.67 E-value=0.91 Score=35.49 Aligned_cols=32 Identities=38% Similarity=0.623 Sum_probs=27.0
Q ss_pred ceeecccccccCc--chhHHhhCChHHHHHHHHH
Q 020054 36 PVCRVCDVVLKSD--SQWDAHQASRKHHEAIKNI 67 (332)
Q Consensus 36 L~C~lC~~~vksE--slW~aH~~Sk~Hr~~~~~l 67 (332)
--|--|+.-|.+. +.|..|+.|++|+.|+...
T Consensus 4 YyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y 37 (77)
T 3cw1_L 4 FYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY 37 (77)
T ss_pred cccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence 4699999999555 4589999999999999873
No 7
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=74.62 E-value=1.2 Score=44.18 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=34.2
Q ss_pred CCCCCceeecccccccCcchhHHhhCChHHHHHHHHHhh
Q 020054 31 NEFDQPVCRVCDVVLKSDSQWDAHQASRKHHEAIKNIKA 69 (332)
Q Consensus 31 n~~GqL~C~lC~~~vksEslW~aH~~Sk~Hr~~~~~lk~ 69 (332)
+..+.+-|..|....+++++-.+|+.||+|..++++.+.
T Consensus 288 ~~~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~k~ 326 (402)
T 4dgw_A 288 SEAKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRN 326 (402)
T ss_dssp ETTTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHSHH
T ss_pred CCCcCeeehhhhhhhccccccHHHhcccccchhHHHHHH
Confidence 456789999999999999999999999999998876543
No 8
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=32.11 E-value=1e+02 Score=22.10 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 020054 259 AAEMIEEYESVDQKTFREKVEALRKKKMEWEAA 291 (332)
Q Consensus 259 ~~~ere~~eidEQi~~~~RV~~L~~kk~e~~~~ 291 (332)
+..+++-.++-||+ |..|+..|+.++++++..
T Consensus 16 ~~LEkqF~~LkEql-Y~ERl~ql~~~Leel~~g 47 (49)
T 2xus_A 16 LDLEKQFSELKEKL-FRERLSQLRLRLEEVGAE 47 (49)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcc
Confidence 33445566678886 889999999999988654
No 9
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=20.94 E-value=41 Score=26.84 Aligned_cols=19 Identities=16% Similarity=0.368 Sum_probs=14.7
Q ss_pred cccCCCCCceeeccccccc
Q 020054 28 VRYNEFDQPVCRVCDVVLK 46 (332)
Q Consensus 28 A~Yn~~GqL~C~lC~~~vk 46 (332)
..-++...|.|+||+..+-
T Consensus 8 ~~~~~~a~l~CtlC~erLE 26 (93)
T 2cs3_A 8 SPMANSGPLCCTICHERLE 26 (93)
T ss_dssp CSSCSCCSCCCSSSCSCCS
T ss_pred CCCCCCCeeEeecchhhhc
Confidence 3445788999999997764
No 10
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=20.41 E-value=34 Score=22.16 Aligned_cols=10 Identities=40% Similarity=0.850 Sum_probs=7.7
Q ss_pred CCCCCCCCCC
Q 020054 204 GALPEGFFDN 213 (332)
Q Consensus 204 ~~LPEGFFDD 213 (332)
-..|+|||-+
T Consensus 19 ~~~p~gff~~ 28 (30)
T 3gs2_B 19 AQAAEGFFRD 28 (30)
T ss_dssp ESCSTTTSCC
T ss_pred cCCCcccccc
Confidence 3479999975
Done!