Query 020055
Match_columns 332
No_of_seqs 178 out of 732
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 06:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00262 Calreticulin: Calreti 100.0 3E-121 7E-126 893.6 14.8 310 19-329 1-365 (367)
2 KOG0674 Calreticulin [Posttran 100.0 2E-116 5E-121 834.6 22.9 318 9-329 11-331 (406)
3 KOG0675 Calnexin [Posttranslat 100.0 7E-107 1E-111 806.0 22.5 308 21-330 43-413 (558)
4 PF00262 Calreticulin: Calreti 99.9 4.8E-25 1E-29 216.6 0.8 101 190-290 224-340 (367)
5 KOG0674 Calreticulin [Posttran 99.9 1.9E-22 4.1E-27 193.2 12.3 262 2-302 1-290 (406)
6 KOG0675 Calnexin [Posttranslat 99.9 8.9E-22 1.9E-26 197.6 12.2 110 189-299 269-395 (558)
7 PF11025 GP40: Glycoprotein GP 70.0 14 0.0003 32.9 6.0 69 101-190 6-74 (165)
8 PLN03161 Probable xyloglucan e 46.9 3E+02 0.0064 27.2 12.9 27 163-190 139-165 (291)
9 PF07210 DUF1416: Protein of u 37.7 40 0.00086 27.4 3.2 28 86-114 5-32 (85)
10 PF06439 DUF1080: Domain of Un 23.7 4.6E+02 0.01 22.3 11.5 138 23-191 4-152 (185)
11 PF07691 PA14: PA14 domain; I 21.2 87 0.0019 25.8 2.7 27 166-192 58-84 (145)
No 1
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=3.2e-121 Score=893.59 Aligned_cols=310 Identities=51% Similarity=0.974 Sum_probs=233.0
Q ss_pred eeEEecCCCc--cCCCeEecccccCC---CCCccEEEeccccC-CCCCCcceeeccccchhhhhccCCC-cCCCCCceEE
Q 020055 19 IFFEERFDDG--WRSRWVISDWKRSE---GKAGYFKHTAGKWH-GDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (332)
Q Consensus 19 ~~F~E~Fd~~--~~~rWi~S~~~k~~---~~~G~w~~~~g~~~-~~~~DkGLv~~~~ak~yaIs~~l~~-~~~~~k~LVv 91 (332)
|||+|+|+++ |.+|||+|++++++ .|.|+|++++|+++ +.++|+||||+++|||||||++|++ |++++++|||
T Consensus 1 v~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVv 80 (367)
T PF00262_consen 1 VYFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVV 80 (367)
T ss_dssp EEEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEE
T ss_pred CeEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEE
Confidence 7999999986 99999999999874 67899999999665 5678999999999999999999998 9999999999
Q ss_pred EEEEeeeceeecCCceEEEcccccccc-cccCCCCeeEEEccCccCCCCceEEEEEEeCCC-------ccccccCCcccc
Q 020055 92 QYSIRFEQDIECGGGYIKLLSAYVNQK-KFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQ-------NYPIKKELECET 163 (332)
Q Consensus 92 QYEVK~q~~i~CGGaYIKLl~~~~d~~-~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~-------~~~~~~~~~~~~ 163 (332)
|||||||++|+|||||||||+.+.++. +|+++|||+||||||+|| .++||||||||++. +|..+++..+.+
T Consensus 81 QYeVK~q~~idCGGaYIKLL~~~~~~~~~f~~~TpY~IMFGPD~CG-~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~~ 159 (367)
T PF00262_consen 81 QYEVKFQQGIDCGGAYIKLLPASFDQEENFSDKTPYSIMFGPDKCG-SSNKVHFIFRHKNPITGEIEEKHLKKPPISCFT 159 (367)
T ss_dssp EEEEEETT--SEEE--EEEEBTTSSGGGG-STTS-ESEEEEEEEES-TTEEEEEEEEEE-TTTEETTEEEE-SSSSB-HH
T ss_pred EEEEEeecceeccceEEEEecCccchhhhcCCCCCceEEeCCccCC-CCceEEEEEEecCCCCCcccceecccCCccccc
Confidence 999999999999999999999988777 999999999999999999 77889999998652 233455666789
Q ss_pred cccCceEEEEECCCCceEEEECCeeecCCCCccCCc--cCCccccccCCCCCCCCcccccccCCCCCCCCCCCC------
Q 020055 164 DKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYD------ 235 (332)
Q Consensus 164 d~~tHlYTLii~~d~tyei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~a~KP~dWd------ 235 (332)
|++||||||||+|||||||+|||+++.+|+|.+||+ ++||++|+||+|+||+||||+++|+||+|+||+|||
T Consensus 160 D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~p~~ 239 (367)
T PF00262_consen 160 DKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLLEDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDEPEF 239 (367)
T ss_dssp SSSEEEEEEEEETTTEEEEEETTEEEEEEEHHHHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS--SE
T ss_pred CCCcceEEEEEcCCCeEEEEECCEEeeccccccccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccCccc
Confidence 999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred --------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------CCCcccccCcCCCCC
Q 020055 236 --------------SIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNP------------------AYKGPWRPKRIKNPN 283 (332)
Q Consensus 236 --------------d~~~~I~dP~~~kP~dwd~~~~G~W~~p~I~nP------------------~ykG~W~~~~I~NP~ 283 (332)
+||++||||+|+||+|||+++||+|+||||+|| +|||+|+||||+||+
T Consensus 240 I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~Np~YkG~W~pp~I~NP~ 319 (367)
T PF00262_consen 240 IPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKNPNYKGKWKPPMIPNPN 319 (367)
T ss_dssp EE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-TT--SS----EEE-TT
T ss_pred ccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccCccccCCccccccCCcc
Confidence 689999999999999999999999999999999 999999999999999
Q ss_pred CCCcccccccCCCCCCCCCCCCCcCCceEEEEEeeeecCCceecCC
Q 020055 284 YKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGG 329 (332)
Q Consensus 284 Y~g~W~p~~i~NP~y~~d~~~~~~~~i~~ig~elW~~~~g~if~~~ 329 (332)
|+|+|+||+|+||+|++|.+|+.+.+|+|||||||||++|+||+|=
T Consensus 320 YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi 365 (367)
T PF00262_consen 320 YKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNI 365 (367)
T ss_dssp ---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEE
T ss_pred ccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeE
Confidence 9999999999999999999999999999999999999999999983
No 2
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-116 Score=834.58 Aligned_cols=318 Identities=54% Similarity=1.057 Sum_probs=307.3
Q ss_pred HHHhhhcceeeeEEecCC--CccCCCeEecccccCCCCCccEEEeccccCCCCC-CcceeeccccchhhhhccCCCcCCC
Q 020055 9 FLFFQISVSEIFFEERFD--DGWRSRWVISDWKRSEGKAGYFKHTAGKWHGDPD-DKGIQTHTDARHYAISAKIPEFSNK 85 (332)
Q Consensus 9 ~~~~~~~~~~~~F~E~Fd--~~~~~rWi~S~~~k~~~~~G~w~~~~g~~~~~~~-DkGLv~~~~ak~yaIs~~l~~~~~~ 85 (332)
|++++++++.|||.|.|. ++|+.||+.|++++. ..|.|.+++|+|++++. |+||+|+++|||||||++|+.|+++
T Consensus 11 l~~v~~~sa~Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK 88 (406)
T KOG0674|consen 11 LALVALASAEVYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFKPFSNK 88 (406)
T ss_pred HHHHHHHhhhhhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccccCcccccccccccccceeeeeeccccccccc
Confidence 334556678899999995 459999999998753 46999999999999987 9999999999999999999999999
Q ss_pred CCceEEEEEEeeeceeecCCceEEEcccccccccccCCCCeeEEEccCccCCCCceEEEEEEeCCCccccccCCcccccc
Q 020055 86 NRTLVVQYSIRFEQDIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDK 165 (332)
Q Consensus 86 ~k~LVvQYEVK~q~~i~CGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~~~~~~~~~d~ 165 (332)
+++|||||+||++|.++|||+||||+++..||.+|+++|||.||||||+||++|+|||+|++|+++||.|++.++|.+|.
T Consensus 89 ~kTLv~q~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~nhlikK~i~Ck~D~ 168 (406)
T KOG0674|consen 89 GKTLVIQFTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGKNHLIKKDIRCKDDE 168 (406)
T ss_pred CceEEEEEEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEEEEEecccccchhccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceEEEEECCCCceEEEECCeeecCCCCccCCccCCccccccCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 020055 166 LTHFYTFILRPDASYSILIDNRERDSGSMYTDWDILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDSIPKEIPDPK 245 (332)
Q Consensus 166 ~tHlYTLii~~d~tyei~iD~~~~~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~a~KP~dWdd~~~~I~dP~ 245 (332)
+|||||||||||+||+|+|||+.+.+|||.+||+++||+.|.||.++||+||+++++|+||+++||+||+ .|++||||+
T Consensus 169 ~tHlYTlIlRPd~TYeVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe-~pehipDpd 247 (406)
T KOG0674|consen 169 LTHLYTLILRPDATYEVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE-KPEHIPDPD 247 (406)
T ss_pred cceeEEEEecCCCeeEEEEcccccccCccccccccccccccCCccccCcccchhhccCCCccccCccccc-cccccCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 699999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCcccccccCCCCCCCCCCCCCcCCceEEEEEeeeecCCce
Q 020055 246 AKKPDNWDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSA 325 (332)
Q Consensus 246 ~~kP~dwd~~~~G~W~~p~I~nP~ykG~W~~~~I~NP~Y~g~W~p~~i~NP~y~~d~~~~~~~~i~~ig~elW~~~~g~i 325 (332)
|+||+|||+++||+|+||||+||.|+|+|+|++|.||+|||.|.+|+|.||+|..++.++.+.+|++||||||||+||||
T Consensus 248 akKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtI 327 (406)
T KOG0674|consen 248 AKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTI 327 (406)
T ss_pred cCCcccccccccCCcCCCCCCCccccCccCcccccCccccceeeccccCCCcCCCCcceeeecccceeeeeEEEeeccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 020055 326 GQGG 329 (332)
Q Consensus 326 f~~~ 329 (332)
|+|-
T Consensus 328 FDN~ 331 (406)
T KOG0674|consen 328 FDNF 331 (406)
T ss_pred ecce
Confidence 9984
No 3
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-107 Score=805.95 Aligned_cols=308 Identities=41% Similarity=0.795 Sum_probs=282.9
Q ss_pred EEecCCCc--cCCCeEecccccCC------CCCccEEEeccccCCCCCCcceeeccccchhhhhccCCC-cCCCCCceEE
Q 020055 21 FEERFDDG--WRSRWVISDWKRSE------GKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKIPE-FSNKNRTLVV 91 (332)
Q Consensus 21 F~E~Fd~~--~~~rWi~S~~~k~~------~~~G~w~~~~g~~~~~~~DkGLv~~~~ak~yaIs~~l~~-~~~~~k~LVv 91 (332)
|+++|+.+ +. |||.|.+||++ .|.|.|.+++++-.+.++|+|||++++|||||||+.|++ |.++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 66778765 34 89999998873 368999999988888999999999999999999999999 9999999999
Q ss_pred EEEEeeeceeecCCceEEEcccc---cccccccCCCCeeEEEccCccCCCCceEEEEEEeCC-C-----ccccccCCc--
Q 020055 92 QYSIRFEQDIECGGGYIKLLSAY---VNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-Q-----NYPIKKELE-- 160 (332)
Q Consensus 92 QYEVK~q~~i~CGGaYIKLl~~~---~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~-~-----~~~~~~~~~-- 160 (332)
|||||||+|++|||||||||+.. ..+++|+++|||+||||||+|| .++||||||||++ . +++.+.++.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG-~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l 200 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCG-ETNKVHFIFRHKNPITGEISEKHLKAPPSSL 200 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccC-CcccEEEEEeeccCCCCeeehhhccCCCccc
Confidence 99999999999999999999983 4789999999999999999999 9999999999975 2 355555543
Q ss_pred --ccccccCceEEEEECCCCceEEEECCeeecCCCCccCCc--cCCccccccCCCCCCCCcccccccCCCCCCCCCCCCC
Q 020055 161 --CETDKLTHFYTFILRPDASYSILIDNRERDSGSMYTDWD--ILPPRKIKAVNAKKPADWDDREYIDDPNAVKPEGYDS 236 (332)
Q Consensus 161 --~~~d~~tHlYTLii~~d~tyei~iD~~~~~~g~l~~d~~--~~~p~~I~Dp~~~KP~DW~d~~~I~Dp~a~KP~dWdd 236 (332)
..+|++|||||||++|||||+|||||++|..|+|.+|+. ++||++|+||++.||+|||+|++||||+|+||+|||+
T Consensus 201 ~~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWDE 280 (558)
T KOG0675|consen 201 KKPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLLTDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWDE 280 (558)
T ss_pred ccccccCCceeEEEEecCCCeEEEEecCcEEEecccccccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccCc
Confidence 567999999999999999999999999999999999995 8999999999999999999999999999999999994
Q ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCCC-------------------CCCCCCCCCcccccC
Q 020055 237 --------------------IPKEIPDPKAKKPDNWDEDEDGLWKP-------------------PKIPNPAYKGPWRPK 277 (332)
Q Consensus 237 --------------------~~~~I~dP~~~kP~dwd~~~~G~W~~-------------------p~I~nP~ykG~W~~~ 277 (332)
||++|+||+|+||+|||++++|+|+| |||.||+|||+|.+|
T Consensus 281 ~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~p 360 (558)
T KOG0675|consen 281 DAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWILP 360 (558)
T ss_pred CCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCccc
Confidence 68999999999999999999887665 566778899999999
Q ss_pred cCCCCCCCCcccccccCCCCCCCCCCCCCcCCceEEEEEeeeecCCceecCCc
Q 020055 278 RIKNPNYKGKWKIPYIDNPEFEDDPDLYVLKPIKYVGIEVWQITWLSAGQGGF 330 (332)
Q Consensus 278 ~I~NP~Y~g~W~p~~i~NP~y~~d~~~~~~~~i~~ig~elW~~~~g~if~~~~ 330 (332)
||.||+|+|+|+||+|+||+||++.+|+.+.+|+|||||||+|+++++|+|=+
T Consensus 361 mI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~ 413 (558)
T KOG0675|consen 361 MIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNII 413 (558)
T ss_pred cccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeE
Confidence 99999999999999999999999999999999999999999999999999843
No 4
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.90 E-value=4.8e-25 Score=216.65 Aligned_cols=101 Identities=44% Similarity=0.876 Sum_probs=48.7
Q ss_pred cCCCCccCCccCCccccccCCCCCCCCccc--ccccCCCCCCCCCCCCC------CCCCCCCCCCCCC--CCC------C
Q 020055 190 DSGSMYTDWDILPPRKIKAVNAKKPADWDD--REYIDDPNAVKPEGYDS------IPKEIPDPKAKKP--DNW------D 253 (332)
Q Consensus 190 ~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d--~~~I~Dp~a~KP~dWdd------~~~~I~dP~~~kP--~dw------d 253 (332)
....+++||+...|++|+||++.||++|++ +++|+||+|+||+|||+ ++++|+||.|..+ .-| |
T Consensus 224 p~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~~gCG~w~~p~i~N 303 (367)
T PF00262_consen 224 PNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKEPGCGEWKPPMIKN 303 (367)
T ss_dssp SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTTS-BSS----EEE-
T ss_pred ccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccCCCccccccccccC
Confidence 355666777766677777777777777776 57999999999999997 5899999988873 234 7
Q ss_pred CCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCcccc
Q 020055 254 EDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKI 290 (332)
Q Consensus 254 ~~~~G~W~~p~I~nP~ykG~W~~~~I~NP~Y~g~W~p 290 (332)
.+++|+|+||||+||+|||+|+||+|+||+|..+=.|
T Consensus 304 p~YkG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p 340 (367)
T PF00262_consen 304 PNYKGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNP 340 (367)
T ss_dssp TT--SS----EEE-TT---S----EEE-TT--SSTTT
T ss_pred ccccCCccccccCCccccccccccccCCCcccCCCCc
Confidence 7999999999999999999999999999999987544
No 5
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.9e-22 Score=193.16 Aligned_cols=262 Identities=27% Similarity=0.495 Sum_probs=184.4
Q ss_pred hhHHHHHHHHhhhcceeeeEEecCCCcc--CCCeEecccccCCCCCccEEEeccccCCCCCCcceeeccccchhhhhccC
Q 020055 2 MLKLLVLFLFFQISVSEIFFEERFDDGW--RSRWVISDWKRSEGKAGYFKHTAGKWHGDPDDKGIQTHTDARHYAISAKI 79 (332)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~F~E~Fd~~~--~~rWi~S~~~k~~~~~G~w~~~~g~~~~~~~DkGLv~~~~ak~yaIs~~l 79 (332)
||..+++|+||+. .+-+.-...|.+.+ ...|. .+|.++... ++ ..|. -..+.+++|+-..+
T Consensus 1 ~~~~~~~~~ll~~-v~~~sa~Vyf~E~F~d~~~w~-~rwv~skhk-~~---~fG~----------f~ls~g~f~g~~~~- 63 (406)
T KOG0674|consen 1 MLPSFWVLCLLAL-VALASAEVYFKEEFLDEDGWE-NRWVQSKHK-SR---DFGK----------FVLSAGKFYGDEEK- 63 (406)
T ss_pred CchhHHHHHHHHH-HHHHhhhhhhhhhhcCCCCce-EEEEEeecc-cc---ccCc----------eEeccccccCcccc-
Confidence 3446677887766 66777788999997 67886 555543221 11 3344 34556899999887
Q ss_pred CC-cCCCCCceEEEEEEeeeceeecCC-ceEEEcccccccccccCCCCeeEEEccCccCCCCceEEEEEEeCC-Cccccc
Q 020055 80 PE-FSNKNRTLVVQYSIRFEQDIECGG-GYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQG-QNYPIK 156 (332)
Q Consensus 80 ~~-~~~~~k~LVvQYEVK~q~~i~CGG-aYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~-~~~~~~ 156 (332)
++ ++++..-....-..+|.. ++..| .-+-.++....|+ .+|..-|..+|--|.-. ..+.+ ..|.+.
T Consensus 64 DkGiqTsqd~rfya~sa~F~~-FsnK~kTLv~q~tVkheQ~-~dcgggyiKl~~~d~Dq---------~~f~ges~y~iM 132 (406)
T KOG0674|consen 64 DKGIQTSQDARFYAISAKFKP-FSNKGKTLVIQFTVKHEQK-IDCGGGYIKLFPADLDQ---------TDFHGESPYNIM 132 (406)
T ss_pred cccccccccceeeeeeccccc-ccccCceEEEEEEeccccc-ccCCceeEEeeecccch---------hhcCCCcccccc
Confidence 55 999887778888888887 66667 5566677666654 48888899999877753 34444 344442
Q ss_pred -cCCccc-ccccCceEEEEECCCCceEEEEC--CeeecCCCCccCCccCCc----cccccC---CCCCCCCcc--ccccc
Q 020055 157 -KELECE-TDKLTHFYTFILRPDASYSILID--NRERDSGSMYTDWDILPP----RKIKAV---NAKKPADWD--DREYI 223 (332)
Q Consensus 157 -~~~~~~-~d~~tHlYTLii~~d~tyei~iD--~~~~~~g~l~~d~~~~~p----~~I~Dp---~~~KP~DW~--d~~~I 223 (332)
.+-.|+ ..++.|+ +..+.+.+-.|+-+ ++......|++-- +.|. -.|+.- +.+--.||+ .++.|
T Consensus 133 fGPDICG~~tkKVhv--il~ykg~nhlikK~i~Ck~D~~tHlYTlI-lRPd~TYeVkIDn~~~esGsle~DWdll~~KKi 209 (406)
T KOG0674|consen 133 FGPDICGFGTKKVHV--ILNYKGKNHLIKKDIRCKDDELTHLYTLI-LRPDATYEVKIDNQQVESGSLEDDWDLLPPKKI 209 (406)
T ss_pred cCCcccCCCCceEEE--EEecccccchhccccccccCCcceeEEEE-ecCCCeeEEEEcccccccCcccccccccccccc
Confidence 222465 4788884 44455555566544 3333334444321 1111 145443 466778999 47899
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCcccccCcCCCCCCCCccccccc
Q 020055 224 DDPNAVKPEGYDSIPKEIPDPKAKKPDNWDEDEDGLWKPPKIPNPA----------YKGPWRPKRIKNPNYKGKWKIPYI 293 (332)
Q Consensus 224 ~Dp~a~KP~dWdd~~~~I~dP~~~kP~dwd~~~~G~W~~p~I~nP~----------ykG~W~~~~I~NP~Y~g~W~p~~i 293 (332)
-||.|+||+|||+ .++|+||+.+||++|+ .|..|++|. ..|+|.||||+||.|+|+|+|++|
T Consensus 210 kdP~a~KPedWDe-r~~I~DpeD~Kp~dwe-------~pehipDpdakKpedWddemDGEWe~P~i~nPey~gewkPkqi 281 (406)
T KOG0674|consen 210 KDPDAKKPEDWDE-REYIPDPEDKKPQDWE-------KPEHIPDPDAKKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQI 281 (406)
T ss_pred CCccccCcccchh-hccCCCccccCccccc-------cccccCCcccCCcccccccccCCcCCCCCCCccccCccCcccc
Confidence 9999999999997 9999999999999998 366788874 479999999999999999999999
Q ss_pred CCCCCCCCC
Q 020055 294 DNPEFEDDP 302 (332)
Q Consensus 294 ~NP~y~~d~ 302 (332)
.||+|++-.
T Consensus 282 ~np~yKg~w 290 (406)
T KOG0674|consen 282 KNPAYKGKW 290 (406)
T ss_pred cCcccccee
Confidence 999998654
No 6
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=8.9e-22 Score=197.61 Aligned_cols=110 Identities=36% Similarity=0.635 Sum_probs=96.2
Q ss_pred ecCCCCccCCccCCccccccCCCCCCCCcccc--cccCCCCCCCCCCCCC------CCCCCCCCCCCC---------CCC
Q 020055 189 RDSGSMYTDWDILPPRKIKAVNAKKPADWDDR--EYIDDPNAVKPEGYDS------IPKEIPDPKAKK---------PDN 251 (332)
Q Consensus 189 ~~~g~l~~d~~~~~p~~I~Dp~~~KP~DW~d~--~~I~Dp~a~KP~dWdd------~~~~I~dP~~~k---------P~d 251 (332)
..++.+++||+...|.+|+|+.+.||++|.+. ++|+||+|+||+|||+ |+++|.||.|++ |..
T Consensus 269 DpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I 348 (558)
T KOG0675|consen 269 DPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMI 348 (558)
T ss_pred CcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCccc
Confidence 45678999999999999999999999999974 5999999999999997 689999999984 444
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccccCcCCCCCCCCcccccccCCCCCC
Q 020055 252 WDEDEDGLWKPPKIPNPAYKGPWRPKRIKNPNYKGKWKIPYIDNPEFE 299 (332)
Q Consensus 252 wd~~~~G~W~~p~I~nP~ykG~W~~~~I~NP~Y~g~W~p~~i~NP~y~ 299 (332)
=|..++|.|.+|||.||+|+|+|.||+|+||+|...=+| -+-+|=|-
T Consensus 349 ~NP~YKGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p-~~~~pIsa 395 (558)
T KOG0675|consen 349 NNPNYKGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKP-FTLTPISA 395 (558)
T ss_pred CCCccCCCCccccccCccccCccccccCCCcccccccCc-ccccchhh
Confidence 589999999999999999999999999999999988544 35556543
No 7
>PF11025 GP40: Glycoprotein GP40 of Cryptosporidium; InterPro: IPR021035 This entry represents proteins that are highly conserved in Cryptosporidium spp. Many members are annotated as being a 60 kDa glycoprotein.
Probab=70.02 E-value=14 Score=32.85 Aligned_cols=69 Identities=16% Similarity=0.341 Sum_probs=42.9
Q ss_pred eecCCceEEEcccccccccccCCCCeeEEEccCccCCCCceEEEEEEeCCCccccccCCcccccccCceEEEEECCCCce
Q 020055 101 IECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSYQGQNYPIKKELECETDKLTHFYTFILRPDASY 180 (332)
Q Consensus 101 i~CGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~~~~~~~~~~~~~~~~d~~tHlYTLii~~d~ty 180 (332)
=+||-.||--+....-...+.|. -|+|...|.+-. -.+.|++.+...+.+ |+ -+.++|.
T Consensus 6 eeCgtsFvmWf~~GtpvaTlkcg-~YTiVyAP~k~~------------------t~PaPrYISGev~~V-tF-eksd~Tv 64 (165)
T PF11025_consen 6 EECGTSFVMWFGEGTPVATLKCG-DYTIVYAPEKDQ------------------TDPAPRYISGEVKSV-TF-EKSDSTV 64 (165)
T ss_pred hhcceeEEEEecCCcceEEEecC-CEEEEEccccCC------------------CCCCCceeecceEEE-EE-eccCCeE
Confidence 46999999888765444444443 388888887742 112233444344433 33 3368999
Q ss_pred EEEECCeeec
Q 020055 181 SILIDNRERD 190 (332)
Q Consensus 181 ei~iD~~~~~ 190 (332)
.|+|||+...
T Consensus 65 kIkvd~kefs 74 (165)
T PF11025_consen 65 KIKVDGKEFS 74 (165)
T ss_pred EEEECCeEcc
Confidence 9999998754
No 8
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=46.91 E-value=3e+02 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.1
Q ss_pred ccccCceEEEEECCCCceEEEECCeeec
Q 020055 163 TDKLTHFYTFILRPDASYSILIDNRERD 190 (332)
Q Consensus 163 ~d~~tHlYTLii~~d~tyei~iD~~~~~ 190 (332)
....-|.|++.=.| +.....|||+.+.
T Consensus 139 pt~dFHtYsI~Wtp-~~I~wyVDG~~iR 165 (291)
T PLN03161 139 PTADFHNYTIHWNP-SEVVWYVDGTPIR 165 (291)
T ss_pred CccCcEEEEEEEch-hhEEEEECCEEEE
Confidence 34556999999987 4577789999876
No 9
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=37.69 E-value=40 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=24.3
Q ss_pred CCceEEEEEEeeeceeecCCceEEEcccc
Q 020055 86 NRTLVVQYSIRFEQDIECGGGYIKLLSAY 114 (332)
Q Consensus 86 ~k~LVvQYEVK~q~~i~CGGaYIKLl~~~ 114 (332)
.|..|||=.|. ..+---||||+.||..+
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 57789999999 77888899999999863
No 10
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=23.71 E-value=4.6e+02 Score=22.34 Aligned_cols=138 Identities=9% Similarity=0.098 Sum_probs=63.6
Q ss_pred ecCCCccCCCeEecccccCCCCCccEEEeccccC---CCCCCcceeeccccchhhhhccCCCcCCCCCceEEEEEEeeec
Q 020055 23 ERFDDGWRSRWVISDWKRSEGKAGYFKHTAGKWH---GDPDDKGIQTHTDARHYAISAKIPEFSNKNRTLVVQYSIRFEQ 99 (332)
Q Consensus 23 E~Fd~~~~~rWi~S~~~k~~~~~G~w~~~~g~~~---~~~~DkGLv~~~~ak~yaIs~~l~~~~~~~k~LVvQYEVK~q~ 99 (332)
.=|+..-.+.|...... ...+.|.+..|... ......|+++++ + .=++++|+.++|+..
T Consensus 4 ~lf~g~~l~gW~~~~~~---~~~~~~~v~dG~l~~~~~~~~~~~~l~~~------------~---~~~df~l~~d~k~~~ 65 (185)
T PF06439_consen 4 SLFNGKDLDGWKIYGGG---WFEGGWSVKDGVLVSNGSSGSGGGYLYTD------------K---KFSDFELEVDFKITP 65 (185)
T ss_dssp ESS-SSCGTTEEETTSS---SETTTEEEETTEEE-GGGGESSS--EEES------------S---EBSSEEEEEEEEE-T
T ss_pred EeECCCCHHHCeeCCCC---ccccCcEeeCCEEEecccCCCCcceEEEC------------C---ccccEEEEEEEEECC
Confidence 34665556889877422 23577877777543 111122222221 1 125589999999833
Q ss_pred eeecCCceEEEcccccccccccCCCCeeEEEccCccCCCCceEEEEEEe-CCCccc-----ccc--CCcccccccCceEE
Q 020055 100 DIECGGGYIKLLSAYVNQKKFGGDAPYSLMFGPDICGTQKKHLHVILSY-QGQNYP-----IKK--ELECETDKLTHFYT 171 (332)
Q Consensus 100 ~i~CGGaYIKLl~~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvHfI~~~-~~~~~~-----~~~--~~~~~~d~~tHlYT 171 (332)
+- .+|-++ .... .........-|.+-..++.++ . ...+ .+..+. ... ......+ .-|=++
T Consensus 66 ~~-~sGi~~--r~~~-~~~~~~~~~gy~~~i~~~~~~-~------~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~W~~~~ 133 (185)
T PF06439_consen 66 GG-NSGIFF--RAQS-PGDGQDWNNGYEFQIDNSGGG-T------GLPNSTGSLYDEPPWQLEPSVNVAIPPG-EWNTVR 133 (185)
T ss_dssp T--EEEEEE--EESS-ECCSSGGGTSEEEEEE-TTTC-S------TTTTSTTSBTTTB-TCB-SSS--S--TT-SEEEEE
T ss_pred CC-CeEEEE--Eecc-ccCCCCcceEEEEEEECCCCc-c------CCCCccceEEEeccccccccccccCCCC-ceEEEE
Confidence 11 334333 3321 111112233477777777764 0 0011 122220 111 1112223 333345
Q ss_pred EEECCCCceEEEECCeeecC
Q 020055 172 FILRPDASYSILIDNRERDS 191 (332)
Q Consensus 172 Lii~~d~tyei~iD~~~~~~ 191 (332)
++.+ .+++.+.|||+.+..
T Consensus 134 I~~~-g~~i~v~vnG~~v~~ 152 (185)
T PF06439_consen 134 IVVK-GNRITVWVNGKPVAD 152 (185)
T ss_dssp EEEE-TTEEEEEETTEEEEE
T ss_pred EEEE-CCEEEEEECCEEEEE
Confidence 5665 688999999987754
No 11
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=21.23 E-value=87 Score=25.77 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=22.0
Q ss_pred cCceEEEEECCCCceEEEECCeeecCC
Q 020055 166 LTHFYTFILRPDASYSILIDNRERDSG 192 (332)
Q Consensus 166 ~tHlYTLii~~d~tyei~iD~~~~~~g 192 (332)
.+-.||+.+..++.+++.|||+.+...
T Consensus 58 ~~G~y~f~~~~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 58 ETGTYTFSLTSDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SSEEEEEEEEESSEEEEEETTEEEEEC
T ss_pred cCceEEEEEEecccEEEEECCEEEEcC
Confidence 345689999999999999999887543
Done!