BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020057
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99155|PEX2_YARLI Peroxisomal biogenesis factor 2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX2 PE=3 SV=2
Length = 381
Score = 35.4 bits (80), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 139 GSPLPGVKPQQLDEYIRIPKETIDILKDQVF-GFDTFFVTNQEPYE 183
G+P+P V+ QLD + + E +D+LK+Q+F GF F ++ YE
Sbjct: 11 GAPVPNVRVHQLDASL-LDAELVDLLKNQLFKGFTNFHPEFRDKYE 55
>sp|Q9PNM6|Y1068_CAMJE Putative zinc metalloprotease Cj1068 OS=Campylobacter jejuni subsp.
jejuni serotype O:2 (strain NCTC 11168) GN=Cj1068 PE=3
SV=1
Length = 368
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 288 LPGALVTALVIGVHELGHILAAKSTGVELGV 318
L LV + +I HELGH LAA+S GV++ V
Sbjct: 23 LATVLVISFLIFFHELGHFLAARSLGVKVEV 53
>sp|P38920|MLH1_YEAST DNA mismatch repair protein MLH1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MLH1 PE=1 SV=2
Length = 769
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 109 QPQVENQINGNDVADTKGGVQDDGNGEVAS-GSPLPGVKPQQLDEYIRIPKETIDI 163
QP+ N IN ND+ D Q G+ +V S P D YIR+PKE +++
Sbjct: 454 QPRDANTINDNDLKDQPKKKQKLGDYKVPSIADDEKNALPISKDGYIRVPKERVNV 509
>sp|Q924T3|XRCC4_MOUSE DNA repair protein XRCC4 OS=Mus musculus GN=Xrcc4 PE=1 SV=1
Length = 326
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 36 RPVRCRLGNFSSYKVSRFCRKKRELICRVTDTQTEPDSNND 76
+ V RLG+F+ KVS RELIC DT TE + N+
Sbjct: 102 KDVSFRLGSFNLDKVSNSAEVIRELICYCLDTITEKQAKNE 142
>sp|A8N936|DNLI4_COPC7 DNA ligase 4 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC
MYA-4618 / FGSC 9003) GN=LIG4 PE=3 SV=2
Length = 1025
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 66 DTQTEPDSNNDKEKEVH-----DGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
D + P+ +++ E+H D +++ A D+ED ++ DS ++ E + + +D
Sbjct: 812 DEEQAPEIKEEQDGELHEWLKVDDRKSPALPAHDEEDSVTEDDSD-NADVADEEEPDLDD 870
Query: 121 VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRI--PKETIDILKDQVFGFDTFFVTN 178
KG +D+G G +A+ S P +D +++ +E +D D +F F++ +
Sbjct: 871 WFQVKGETEDEGAGALATASRHRETTP-DVDGDVKMGESEEAMDYDPDVIFKHLCFYLDS 929
Query: 179 -QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFG-----DQYKLFLLVNPEDDKPVAVV 232
G+ + K++E++ +K+ G D+ KL +V + D V
Sbjct: 930 PANAQRHGMATRPKYEAAITKSFEEVEKLIKDNGGKIVDLDEPKLTHVVLDKRDDSRRVE 989
Query: 233 VPRKTLQP 240
+ ++T +P
Sbjct: 990 LMKRTSKP 997
>sp|Q7Z7W5|DNLI4_COPCI DNA ligase 4 OS=Coprinopsis cinerea GN=LIG4 PE=2 SV=1
Length = 1025
Score = 32.0 bits (71), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 86/188 (45%), Gaps = 15/188 (7%)
Query: 66 DTQTEPDSNNDKEKEVH-----DGQENQPATASDQEDDKSQPDSQLDSQPQVENQINGND 120
D + P+ +++ E+H D +++ A D+ED ++ DS ++ E + + +D
Sbjct: 812 DEEQAPEIKEEQDGELHEWLKVDDRKSPALPAHDEEDSVTEDDSD-NADVADEEEPDLDD 870
Query: 121 VADTKGGVQDDGNGEVASGSPLPGVKPQQLDEYIRI--PKETIDILKDQVFGFDTFFVTN 178
KG +D+G G +A+ S P +D +++ +E +D D +F F++ +
Sbjct: 871 WFQVKGETEDEGAGALATASRHRETTP-DVDGDVKMGESEEAMDYDPDVIFKHLCFYLDS 929
Query: 179 -QEPYEGGVLFKGNLRGQAAKTYEKISTRMKNKFG-----DQYKLFLLVNPEDDKPVAVV 232
G+ + K++E++ +K+ G D+ KL +V + D V
Sbjct: 930 PANAQRHGMATRPKYEAAITKSFEEVEKLIKDNGGKIVDLDEPKLTHVVLDKRDDSRRVE 989
Query: 233 VPRKTLQP 240
+ ++T +P
Sbjct: 990 LMKRTSKP 997
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,579,090
Number of Sequences: 539616
Number of extensions: 5897203
Number of successful extensions: 22367
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 21519
Number of HSP's gapped (non-prelim): 855
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)