BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020059
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AJ52|MURD_DESPS UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfotalea
psychrophila (strain LSv54 / DSM 12343) GN=murD PE=3
SV=1
Length = 456
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 19/288 (6%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA L ++G +V+ EL AA V+ R ++A+TGTNGK+TV + VG +L G FVGGN
Sbjct: 91 LARLRRAGVQVLGELALAAPVLDR--PVVAITGTNGKTTVTSLVGDLLRASGKRVFVGGN 148
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + L SS + V V+EVSS+Q+E+ F P ++++LNL+PDHL+RH
Sbjct: 149 IGVPL-------LDLLSSGDEVDVIVLEVSSFQLELAGD-FSPHIALLLNLSPDHLDRHG 200
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
+ Y K HLF T + ++ G+ L G ++ F D
Sbjct: 201 DLAGYRAAKMHLFQKQGMTDIAIVS-GDDPLCLLSDGCGEASRYLFGFSAAS-DISVAAG 258
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILRTPP 256
FE G L + + R + NAA AA L D+E I
Sbjct: 259 HFEFDFAGQREIYSLRDSALDNRTGWLNAAPAAFIARSLACAKADIE---RGIAAFTLDA 315
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
HRM+ V I GV + +DSKATN A + L L + +++ GG+ K
Sbjct: 316 HRMEPVA-SIAGVQYYNDSKATNTGAVISALQQLV--RVILIAGGRDK 360
>sp|B8FBS0|MURD_DESAA UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Desulfatibacillum alkenivorans (strain AK-01) GN=murD
PE=3 SV=1
Length = 450
Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 29/295 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L + G V+ E++ A++ I I+AVTGTNGK+TV + +G+M+ GI AFVGGN
Sbjct: 85 LEAAREKGVPVIGEVELASRFI--QAPIIAVTGTNGKTTVTSLIGEMMEASGISAFVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+GNPL + + K QV V E+SS+Q++ + F P V+++ N+T DH++R+
Sbjct: 143 IGNPL-------VNYAKGEDKAQVVVAEISSFQLDTI-ESFAPKVALLTNVTEDHMDRYD 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M+ YA +K +F + +L G + A+ G W F G + + EA A
Sbjct: 195 GMEGYAASKARVFMNQTGADFAILN-GCDKWSRAMCGGIKASQWF--FTG-REEAEAGIA 250
Query: 198 SFEVPAVGVVSQLQLH------NMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A+ + Q H M + G HN NAA AAL+ VE + I+
Sbjct: 251 -MNAGAMDFFTGAQKHWSLSLKKMTLSGEHNKENAAAAALAAYAAG--ASVEGIQGAIDA 307
Query: 252 LRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI--LLGGQAK 304
+ PHR++ V R++ V + DDSKATN++A L L+G + ++GG+ K
Sbjct: 308 FKGLPHRLEFV-REVMDVKYYDDSKATNVDAV---LRALEGFNAPVHLIMGGRDK 358
>sp|Q2IG29|MURD_ANADE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Anaeromyxobacter
dehalogenans (strain 2CP-C) GN=murD PE=3 SV=1
Length = 462
Score = 127 bits (320), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 29/298 (9%)
Query: 22 LQSGKR----VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQML-NHLGIEAFVGG 76
+Q+ +R V E++ AA+ + + I+ +TGTNGKST G +L H FVGG
Sbjct: 87 IQAARRRGVPVWGEVELAARFL-GGLPIVGITGTNGKSTTTALTGALLARHR--RTFVGG 143
Query: 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH 136
NLG PLSE S +P AVVE+SS+Q+E + F V+ VLN+TPDHL+R+
Sbjct: 144 NLGTPLSELVL------SGEPA-AAAVVELSSFQLEGIER-FRARVAAVLNVTPDHLDRY 195
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQH---LNEAIKGHRFNLAWIGAFPGVKID-- 191
+ YA K LF+ + + + + A +G + P D
Sbjct: 196 PDVDAYAAAKARLFATQEPDDVAVANARDPRALAMAGASRGDLHTFGFGAPVPASARDEG 255
Query: 192 ---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
TA + P + QLHN + GRHN NA A L +GV EA+ +
Sbjct: 256 GEPGPGGTAIWYTPRGRAPERYQLHNRALRGRHNRENAMAAVLCA--RLMGVPGEAVQAG 313
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAK 304
++ HR+++V + +GV WV+DSKATN+++T GL + V+++GG+ K
Sbjct: 314 LDAFPGLHHRLELVA-EGRGVEWVNDSKATNVDSTFVGLAAFPAGAPRVVLIMGGRGK 370
>sp|A8ZXW5|MURD_DESOH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfococcus
oleovorans (strain DSM 6200 / Hxd3) GN=murD PE=3 SV=1
Length = 459
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 147/289 (50%), Gaps = 27/289 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G VM E++ AA+ + + + AVTGTNGK+TV T +G ML G + FVGGN+G PL
Sbjct: 93 EKGIPVMGEMELAARFVTKPVA--AVTGTNGKTTVTTLLGDMLKASGRQVFVGGNIGAPL 150
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I +AVVEVSS+Q++ ++ F P V+V+LN+ DHL R+ Y
Sbjct: 151 -------IGFADKGENADMAVVEVSSFQLDT-SETFRPHVAVLLNIAEDHLARYVDFNAY 202
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-----FNLAWIGAFPGVKIDT--EAK 195
+K +F + + ++ + H+ +A KG R FN V DT E
Sbjct: 203 VRSKGRIFENQEADDVAVINGADFHVLQASKGIRSRKLTFNAGKNTQDGAVIGDTAVEIV 262
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
TA + + V S L + RHN N +AA ++ L +G VE + + ++ +
Sbjct: 263 TAGTKTATISVTSPL------MRARHNMEN--IAAATLAALAMGATVEGIQAAVDGFQGL 314
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
HR++ V I V + DDSKATN +A L + + V+LLGG+ K
Sbjct: 315 RHRLEYVA-SIDDVHYFDDSKATNPDAVRRAL-EFFTSRVVLLLGGEDK 361
>sp|Q7V0A5|MURD_PROMP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1986 / MED4) GN=murD
PE=3 SV=1
Length = 473
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 144/291 (49%), Gaps = 26/291 (8%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKERGIVVIGEINIAWESL-KNINWIGITGTNGKTTVTHLLSHILRENNLFAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPK-FQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTM 139
PL E A+ S+K K V E+SS+Q+EI P + + TPDHL+RHKT+
Sbjct: 158 PLCEIAY------STKSKNIDWIVAELSSFQIEIATHCIKPKIGIWTTFTPDHLDRHKTL 211
Query: 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
NY K L ++ + + +Q+L E K N WI P V +++ +
Sbjct: 212 DNYFKIKNSLLKQ---SEFRIYNYDDQYLKENFKS-LLNGIWITTNPNV---SDSDHCDY 264
Query: 200 EVPAVGVVSQ-----LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254
+ + + L L N K+ G HN N +A + IG+ E + + +
Sbjct: 265 WINNENFIVERREKLLSLKNFKLKGNHNTQNLLLAVAA--ARKIGLSTERIKNALLSYEQ 322
Query: 255 PPHRMQ-IVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
PHRM+ I RD + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 323 LPHRMETIFQRDELEI--INDSKATNFDSSVAGINAIKGSP-IIISGGRLK 370
>sp|Q5X1S4|MURD_LEGPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila (strain Paris) GN=murD PE=3 SV=1
Length = 447
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 91/322 (28%), Positives = 155/322 (48%), Gaps = 59/322 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P T+ K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQTDIKCISFGKD 237
Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++ G++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
Q K + F++L +P++
Sbjct: 355 QGKGAD------FQELAQPVSE 370
>sp|Q1IKG8|MURD_KORVE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Koribacter
versatilis (strain Ellin345) GN=murD PE=3 SV=1
Length = 453
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 19/285 (6%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
+ G V+ E++ AAQ +P + +A+TG+NGK+T + G +L G + VGGN+G P
Sbjct: 90 KQGIPVIGEIELAAQFVPGHV--IAITGSNGKTTTTSLCGDILQSGGKKTLVGGNIGTP- 146
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
I+ +V+E+SS+Q+E + F P ++ +LN+TPDHL+RH T + Y
Sbjct: 147 ------AISFAQLANDDTWSVLEISSFQLETIER-FRPEIAAILNITPDHLDRHGTFEKY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTAS--FE 200
A K +F + +L N+ E K + + W VK T + F
Sbjct: 200 AAAKERIFENQREHDFAILNADNEPCVEIAKRVKSQVLWFSRQHEVKHGTFVREDKIYFR 259
Query: 201 VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260
P G + + +M + G HN N V A +G+ V E + + + HR++
Sbjct: 260 DPK-GEREIMPVADMLLKGAHNVEN--VLAAVCVGVAASVAPEQIRKAVSQFKAVEHRLE 316
Query: 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDL-KGHKCVILLGGQAK 304
++GV + +DSKATN++AT L KG ++LGG+ K
Sbjct: 317 YTA-TVKGVDYYNDSKATNVDATIKALESFSKG--VHLILGGKDK 358
>sp|Q5ZSA3|MURD_LEGPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=murD PE=3 SV=1
Length = 447
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 59/322 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGASIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++ G++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTTYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
Q K + F++L +P++
Sbjct: 355 QGKGAD------FQELAQPVSE 370
>sp|Q5WTI5|MURD_LEGPL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Legionella
pneumophila (strain Lens) GN=murD PE=3 SV=1
Length = 447
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 154/322 (47%), Gaps = 59/322 (18%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
Q+G + +++ A+ I S ++A+TGTNGKSTV T VG+M G V GN+G P+
Sbjct: 87 QAGALIYGDIECLAREI--SAPVIAITGTNGKSTVTTLVGEMAKAAGFRVAVAGNIGTPV 144
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
+ + + + + V+E+SS+Q+++ P V+ +LN+TPDHL+RH TM+ Y
Sbjct: 145 -------LDMLDDEHHYDLWVLELSSFQLDL-TYSLSPVVATILNVTPDHLDRHHTMEAY 196
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF--E 200
K Q + K FN + P + K SF +
Sbjct: 197 TQAK-------------------QRIYRGAKAVLFNREDVYTVPHQSCQADIKCISFGKD 237
Query: 201 VPAV---GVVSQ-------------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEA 244
P++ G++ Q L + ++ + G HN+ NA A G+ ++
Sbjct: 238 APSMGNWGLIEQENTIYLAKGMERLLPVESILIKGVHNWMNALAACALAEAA--GISMQH 295
Query: 245 LNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH---KCVILLGG 301
+ + ++ PHR Q V R++ GV W++DSK TN+ AT + + + G K V++ GG
Sbjct: 296 ILNVLKTFPGLPHRCQWV-REVDGVGWINDSKGTNIGATISAINGIGGSMQGKIVLIAGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
Q K + F++L +P++
Sbjct: 355 QGKGAD------FQELAQPVSE 370
>sp|Q2RK81|MURD_MOOTA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Moorella
thermoacetica (strain ATCC 39073) GN=murD PE=3 SV=1
Length = 455
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 14/289 (4%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LA G V SEL+ A +++P +K++A+TGTNGK+T + G++L G A VGGN
Sbjct: 83 LARARARGIPVWSELELAYRLLPPGVKVVAITGTNGKTTTTSLCGRILQEAGWPAVVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G PL + IA P S V EVSS+Q+E F P V+ +LN+TPDHL+RH
Sbjct: 143 IGIPLVK-ELQEIA-PGS-----YVVCEVSSFQLEAITS-FHPQVAAILNITPDHLDRHG 194
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIG--AFPGVKIDTEAK 195
+++NY K + ++ +L + + H G R + + P + E
Sbjct: 195 SLENYIAAKARVMAYQEARDFAILNYDDPHTRSLAGGARSRVLFFSRRERPPLGAWLEDG 254
Query: 196 TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTP 255
++ A G V + + G HN N+ AAL L +GVD E L T++
Sbjct: 255 VICCDLGAGGTVKLCHCEELSLKGSHNLENSMAAALVA--LALGVDPEQLTRTLKTFPAV 312
Query: 256 PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
PHR++ V +I GV +++DSK TN EAT + + + V++ GG+ K
Sbjct: 313 PHRLEPVA-EINGVCYINDSKGTNPEATMKAI-NAYSNPLVLIAGGRNK 359
>sp|A0Q5C2|MURD_FRATN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella
tularensis subsp. novicida (strain U112) GN=murD PE=3
SV=1
Length = 417
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 46/284 (16%)
Query: 27 RVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85
+++S++D Q I + K +AVTG+NGKSTVVT +L LG ++ + GN+G P
Sbjct: 80 KIVSDIDIFYQYIKDTKAKTIAVTGSNGKSTVVTMTDFVLKDLGYKSILVGNIGTP---- 135
Query: 86 AFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSV--VLNLTPDHLERHKTMKNYA 143
AL KF VVEVSS+Q+++ N C + ++N++PDHL+R++ + Y
Sbjct: 136 -----ALNKIGEKFDYCVVEVSSFQIDLFN---CVRFDLGCIINVSPDHLDRYQNFEQYK 187
Query: 144 LTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+KL L F N + H + + G + ++ +
Sbjct: 188 -----------QSKLNLAKFSNDFFVYDV--HNNGIKYAGEYQIIRGAIYRNSTKL---- 230
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVA--ALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
L + K+ G HN N V L LGLDI +A++S I+ + HR +I
Sbjct: 231 ------LDIAETKLFGEHNLENIIVVLNILDRLGLDIN---QAIDS-IKKFKGLEHRCKI 280
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK 304
V + + G T+++DSK TN+ AT L + K +I LLGG AK
Sbjct: 281 VKK-VNGTTYINDSKGTNVGATIAALNSITNSKNIILLLGGVAK 323
>sp|Q3AZI5|MURD_SYNS9 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus
sp. (strain CC9902) GN=murD PE=3 SV=1
Length = 462
Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 142/300 (47%), Gaps = 29/300 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G ++ E++ A + + I + +TGTNGK+TV + +L H GI A +GGN
Sbjct: 86 LNGLRQEGVQIRGEIELAWEAL-NDIPWVGITGTNGKTTVTHLLSHVLGHAGIVAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI-PNKYFCPTVSVVLNLTPDHLERH 136
+G ++ A + KP + V+E+SSYQ+E PN P++ + LTPDHLERH
Sbjct: 145 MGVSAADMALKIRRGETPKPDW--LVMELSSYQIEAGPN--LAPSIGIWTTLTPDHLERH 200
Query: 137 KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA---WIGAFPGVKIDTE 193
T++ Y K H + + L F + + HR +L W+ A P D
Sbjct: 201 GTLEAYRAIK-----HSLLQRSSLAIFNGDDAD--LSAHRPSLKRGMWVKAAPPCHDD-- 251
Query: 194 AKTASFEVPAVGVVSQLQLHNM---KVM---GRHNYHNAAVAALSVLGLDIGVDVEALNS 247
A F + G V + M KV+ G HN N + ++ IG++ E +
Sbjct: 252 -PPADFWIDDAGTVQAREGGAMFPAKVLAMPGAHNRQN--LLLVTAAAAQIGLNAEQIAQ 308
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLN 307
+E PHR++ + +DSKATN +A GL + G V+L GGQ K N
Sbjct: 309 GLESFPGVPHRLENLG-STSSADVFNDSKATNYDAAAVGLQAMAG-PVVVLAGGQTKRGN 366
>sp|Q11RH3|MURD_CYTH3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Cytophaga
hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=murD
PE=3 SV=1
Length = 450
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 158/322 (49%), Gaps = 36/322 (11%)
Query: 14 KATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73
KA + + V+SE++FA + I K +A+TG+NGK+T +L LG
Sbjct: 76 KAPIMKLIRSKAIEVISEIEFAYRHIHPGAKFIAITGSNGKTTTTLLTHHILAQLGYSVG 135
Query: 74 VGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDH 132
+GGN+G L+ H K V V+E+SS+Q++ + Y F V+V+LN+TPDH
Sbjct: 136 LGGNIGTSLARQIIH--------EKKDVYVLELSSFQLD--DMYTFKADVAVLLNITPDH 185
Query: 133 LERHK-TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------- 182
L+R++ +NY +K +F ++ + + + K H + ++
Sbjct: 186 LDRYEYKFENYTASKFRIFQNLTPADYYITYSEDSVIESYKKDHPVDARYVPVSLKQLYS 245
Query: 183 -GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241
GA+ ++ KT VV+ + G+HNY N +AAL+ + IG D
Sbjct: 246 AGAY------SDEKTIQIHALDDTVVT-CNTEEFPLQGKHNYIN-IMAALNA-AVSIGAD 296
Query: 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
+ ++I+ R PHR++ V I GV +V+DSKATN+++ L +K V+++GG
Sbjct: 297 IHKSIASIKSFRNAPHRLEFVGS-IYGVKFVNDSKATNVDSVWYALDSMKT-PVVLIVGG 354
Query: 302 QAKVLNGQESNGFEKLIEPLNH 323
V G + + E L++ H
Sbjct: 355 ---VDKGNDYSQIEALVKEKVH 373
>sp|Q8R9G4|MURD_THETN UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter tengcongensis (strain DSM 15242 /
JCM 11007 / NBRC 100824 / MB4) GN=murD PE=3 SV=1
Length = 450
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 99/306 (32%), Positives = 156/306 (50%), Gaps = 48/306 (15%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ A ++ I A+TGTNGK+T + +G+M + G + +V GN+G PL
Sbjct: 92 GLEILGEVELAYRL--SKAPIYAITGTNGKTTTTSLLGEMFRNAGRKVYVAGNIGYPLIY 149
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
AA A P+ V E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NYA
Sbjct: 150 AALE--AGPNDH-----IVAEISSFQLETV-KEFRPKISCIINITPDHLDRHKTFENYAN 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K +F + + +L + + + W G+K +AK F V
Sbjct: 202 IKGRIFENQREEEYVVLNYDDP------------VTW-----GLKERAKAKVFPFSRKKV 244
Query: 205 ----GVVSQ--LQLHNMKVM--------GRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
V + L L N KV+ G HN N A+AA SV L G++V+A+ +T+
Sbjct: 245 LENGAYVKEGFLYLQNKKVIKVEDIYIPGEHNLEN-ALAASSVAYLS-GIEVDAIETTLR 302
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
+ HR++ V +I+G+ + +DSK TN +A+ + LK V++ GG K G E
Sbjct: 303 TFKGVEHRIEFVA-EIEGIKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE 357
Query: 311 SNGFEK 316
+ F K
Sbjct: 358 FDEFVK 363
>sp|A2BY75|MURD_PROM5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9515) GN=murD PE=3 SV=1
Length = 477
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/294 (27%), Positives = 142/294 (48%), Gaps = 32/294 (10%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G V+ E++ A + + ++I + +TGTNGK+TV + +L + A GN+G
Sbjct: 99 LKEKGIEVLGEVNIAWESL-KNINWIGITGTNGKTTVTHLLSHILRTNNLLAPFAGNIGT 157
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
PL + A+ ++ S + VA E+SSYQ+EI P + + T DHL+RHKT+
Sbjct: 158 PLCKIAY---SIKSKNIDWLVA--ELSSYQIEIATLCIKPKIGIWTTFTADHLDRHKTLD 212
Query: 141 NYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFE 200
NY K L ++ + + + HL E K G+ I T +K + +
Sbjct: 213 NYFKIKNSLLKQ---SEFRIYNYDDIHLRENFKSLS---------KGIWITTSSKQSDLD 260
Query: 201 VPAVGVVSQ----------LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIE 250
+ ++ L L N K+ G HN N +A + IG+ E + + +
Sbjct: 261 HCDYWINNEDFIVERQENLLSLKNFKLKGNHNTQNLLLAIAA--ARKIGLSPEKIKNALL 318
Query: 251 ILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
PHRM+ +++ + ++DSKATN +++ G+ +KG +I+ GG+ K
Sbjct: 319 SYEQLPHRMETIYQS-NKLEIINDSKATNFDSSTAGIKAIKGAP-IIISGGKLK 370
>sp|P45063|MURD_HAEIN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=murD PE=3 SV=1
Length = 437
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 159/333 (47%), Gaps = 46/333 (13%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYS- 169
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL------LPFGNQHLNEA 171
+ VLN+T DH++R+ +++Y K ++ N K+G+ L FG NE
Sbjct: 170 LKAAAATVLNVTEDHMDRYMDLEDYRQAKLRIYH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
K +LLGG K + F +L E +N
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQ 362
>sp|A1AU63|MURD_PELPD UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelobacter
propionicus (strain DSM 2379) GN=murD PE=3 SV=1
Length = 446
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 30/315 (9%)
Query: 23 QSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82
++G ++SE++ A++ I ++A+TGTNGK+T T G + G FVGGN+GNPL
Sbjct: 90 EAGVEIISEIELASRFI--QAPLVAITGTNGKTTATTITGDIFIKNGFRTFVGGNIGNPL 147
Query: 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNY 142
E L S++P +V V E+SS+Q+E + F P V+ +LNL+ DHL+R+ + + Y
Sbjct: 148 IE------LLESAEPVERV-VAEISSFQLEWI-RAFRPAVAALLNLSEDHLDRYASYREY 199
Query: 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVP 202
K +F + ++ ++ + E +G R L FP + E F
Sbjct: 200 IEAKLRIFENQTADDYAVVNADDELVMEHSRGLRACL-----FPFSR-KQELDEGIFHRE 253
Query: 203 AV------GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
+ G + ++ G HN N A L L+ E+L + +
Sbjct: 254 GLIVWRHNGREERFPTAGFRLQGVHNLENIMAALACSLLLECR-PTESL-ACVREFEALH 311
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
HRM+ V R++ GV W +DSKATN+ + L ++ GG+ K G + +
Sbjct: 312 HRMEFV-RELNGVRWYEDSKATNVGSVEKALESFDA--ITLIAGGKDK---GGSYSPLSR 365
Query: 317 LIEPLNHHRCVITEC 331
L+ H +I E
Sbjct: 366 LVRERVRHLVLIGEA 380
>sp|C1F460|MURD_ACIC5 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=murD PE=3 SV=1
Length = 461
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 147/314 (46%), Gaps = 42/314 (13%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G ++ E++ AA+ + K LA+TG+NGK+T + G +L VGGN+G P+
Sbjct: 92 GLPIIGEVELAARFLKG--KTLAITGSNGKTTTTSLCGAILERAHQHVQVGGNIGLPV-- 147
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
IAL +V+E+SS+Q+E + F P ++V+LN+TPDHL+RH + +NY
Sbjct: 148 -----IALVDDSRDDGWSVLEISSFQLETTER-FRPGIAVILNITPDHLDRHGSFENYVA 201
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWI--------GAF--PGVKIDTEA 194
K +F+ + +L + + A + W GAF G + A
Sbjct: 202 AKERIFAAQTHDDALILNADDDAASRAAARASSRIFWFSRNRVIRQGAFVHEGNILFRAA 261
Query: 195 KTASFEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEIL 252
+ A+ E L L + + G HN N AAV A + GV EA+ +
Sbjct: 262 EDAATE-------PILPLSEIPLKGAHNVENVLAAVCAARL----AGVSAEAIRDAVRDF 310
Query: 253 RTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESN 312
R HR++ V +I GV++ +DSKATN++A + GG +L G++ N
Sbjct: 311 RAVEHRLEFVA-EIGGVSFYNDSKATNVDAARKAIEAFP--------GGIHLILGGKDKN 361
Query: 313 GFEKLIEPLNHHRC 326
+ + PL R
Sbjct: 362 SDYRTLRPLMAGRV 375
>sp|A5UIR0|MURD_HAEIG UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Haemophilus
influenzae (strain PittGG) GN=murD PE=3 SV=1
Length = 437
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 159/333 (47%), Gaps = 46/333 (13%)
Query: 5 WLFLLEFQLKATGLA-------CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTV 57
WL + + + GLA L++G V+ +++ + + I + +TG+NGKSTV
Sbjct: 62 WLLESDMIVISPGLAVKTPEIQTALKAGVEVIGDIELFCRAATKPI--VGITGSNGKSTV 119
Query: 58 VTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY 117
T V +M G++ +GGN+G P AL ++ V+E+SS+Q+E
Sbjct: 120 TTLVYEMAKAAGVKVGMGGNIGIP---------ALSLLNEDCELYVLELSSFQLETTYSL 170
Query: 118 FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL------LPFGNQHLNEA 171
V+ VLN+T DH++R+ +++Y K + N K+G+ L FG NE
Sbjct: 171 KAAAVT-VLNVTEDHMDRYMDLEDYRQAKLRIHH---NAKVGVLNNEDRLTFGE---NEN 223
Query: 172 IKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231
H + A A +K + + + + L ++GRHNY N + A
Sbjct: 224 QAKHTVSFAENSADYWLKTENGKQYLMVKDEVI-----LPCEEATLVGRHNYMN--ILAA 276
Query: 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK 291
+ L IG++++++ + + + HR Q+VH+ G+ W++DSKATN+ +T L L
Sbjct: 277 TALAQAIGINLDSIRTALRHFKGLDHRFQLVHQ-ANGIRWINDSKATNVGSTVAALAGLY 335
Query: 292 GH-KCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
K +LLGG K + F +L E +N
Sbjct: 336 IEGKLHLLLGGDGKGAD------FSELAELINQ 362
>sp|B0TZ72|MURD_FRAP2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Francisella
philomiragia subsp. philomiragia (strain ATCC 25017)
GN=murD PE=3 SV=1
Length = 414
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 136/281 (48%), Gaps = 38/281 (13%)
Query: 26 KRVMSELDFAAQVIPRS-IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
++++S++D Q I + K++AVTG+NGKST+VT + +L +G ++ + GN+G P
Sbjct: 79 QKIVSDIDLFYQSIRNTKAKMIAVTGSNGKSTIVTMLDFVLRDMGYKSILVGNIGTP--- 135
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
L KF VVEVSS+Q+++ N + V+N++ DHL+R+K + Y
Sbjct: 136 ------PLNKIGEKFDYCVVEVSSFQIDLFNS-VEFDLGCVVNVSLDHLDRYKNYEEYK- 187
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
+KL L F + H + + G + V+ T
Sbjct: 188 ----------QSKLNLAKFSKDFFVYDV--HNTGIKYAGEYQIVRGSIYKDTTKL----- 230
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
L + + G HN N V L++ G+D+ + I+ + HR +IV +
Sbjct: 231 -----LDITETNLFGEHNLENIIV-VLNIFDR-FGIDISKAVAAIKKFKGLKHRCEIV-K 282
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVI-LLGGQAK 304
+I GVT+++DSK TN+ AT L + K +I LLGG AK
Sbjct: 283 NIAGVTYINDSKGTNVGATIAALNSITSSKNIILLLGGVAK 323
>sp|Q8E9P6|MURD_SHEON UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Shewanella
oneidensis (strain MR-1) GN=murD PE=3 SV=1
Length = 439
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 150/314 (47%), Gaps = 37/314 (11%)
Query: 22 LQSGKRVMSELD-FAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L G V+ +++ FA ++ R ++ +TG+NGK+TV T VG+ML GI VGGN+G
Sbjct: 87 LDMGIEVIGDVELFAREIADRKPCVIGITGSNGKTTVTTLVGEMLREAGIAVAVGGNIGI 146
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL K + V+E+SS+Q+E + C S LN+T DH++R+ M
Sbjct: 147 P---------ALDLLKENADIFVLELSSFQLETTHSLNC-VASTCLNVTEDHMDRYSDMD 196
Query: 141 NYALTKCHLF---SHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K L+ ++ + L + +N+ + F LA D++
Sbjct: 197 AYRKAKLRLYHQSRSIIFNRDDALTIPTEPMNQ----NSFGLAPPEGDEWGICDSKIYHG 252
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257
E+ + VS ++G HN+ N +AA++++ +GVD + + + H
Sbjct: 253 HSEIMPITEVS--------LIGSHNHAN-LLAAMALV-YAVGVDKQVMANVARTFTGLSH 302
Query: 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH--KCVILLGGQAKVLNGQESNGFE 315
R ++V GVT+V+DSKATN+ AT L L H +++ GG K + F
Sbjct: 303 RCEVVGVK-GGVTYVNDSKATNVGATVAALDGLSDHLGDIILIAGGDGKGAD------FS 355
Query: 316 KLIEPLNHHRCVIT 329
L EPL +IT
Sbjct: 356 PLEEPLTKVTHLIT 369
>sp|Q1MPC1|MURD_LAWIP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=murD PE=3 SV=1
Length = 440
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 134/281 (47%), Gaps = 44/281 (15%)
Query: 27 RVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAA 86
+V+SE + A + K++A+TGTNGK+T+ + ML GI FVGGN+G PLSE
Sbjct: 106 QVLSETELAWYQLSNE-KVIAITGTNGKTTIASLCAAMLVEQGISVFVGGNIGTPLSEYV 164
Query: 87 FHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
K K V V+E+SS+Q++ + F P +++ N++ +HL+ H+ M Y K
Sbjct: 165 L-------CKKKVSVVVLELSSFQLQTCS-LFRPDIAICSNISINHLDYHRNMDEYISAK 216
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
++ + + L +L PG+ EA S+ + A V
Sbjct: 217 LNICKNQCESDLAILK-----------------------PGM----EALVDSYNLKA-RV 248
Query: 207 VSQLQLHNM---KVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
V L N +++G HN NA A L+ ++GV E + HR++ V
Sbjct: 249 VFYRDLGNFSTSRLLGVHNLENAEAAWLAC--KELGVTEEIAKKVVTTFEPLEHRLEQV- 305
Query: 264 RDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
R + GV +V+DSK T +EA L K ++L GG+ K
Sbjct: 306 RLLNGVLYVNDSKGTTVEALRAALESFK-QPILLLAGGRFK 345
>sp|Q0AJD9|MURD_NITEC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Nitrosomonas
eutropha (strain C91) GN=murD PE=3 SV=1
Length = 470
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 153/309 (49%), Gaps = 21/309 (6%)
Query: 22 LQSGKRVMSELDFAA----QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
LQ G V+ +++ A Q P KILA+TG+NGK+TV T VG+M + G + V GN
Sbjct: 88 LQQGVSVIGDIELFAIALDQHAPPGTKILAITGSNGKTTVATMVGEMARNTGWDVEVAGN 147
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G +A I + + V+E+SS+Q+E + P +VVLNL+ DHL+R++
Sbjct: 148 IGLAALDALMQRI---DTGKWPHLWVLELSSFQLETTSS-LRPNAAVVLNLSEDHLDRYR 203
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
++ YA K +F N+ + +L + + + L + + P + +
Sbjct: 204 IIEEYAAAKARIFPDPHNSCVQVLNREDARVYAMAHENSKQLTFGLSAPAFDDEFGVLPS 263
Query: 198 SFEV-PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
++ A G +++ + V G HN NA A +D+ E L + I + P
Sbjct: 264 GSDLWLAQGTTRLMKVSELAVAGLHNAANALAALALCRAIDL--PFEPLLHALHIFKGLP 321
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILL-GGQAKVLNGQESNGFE 315
HRMQ + + GVT+ DDSK+TN+ + L + K VIL+ GG K GQ+ F
Sbjct: 322 HRMQKI-AEFNGVTFYDDSKSTNVGSAVAALNGFR--KNVILIAGGDGK---GQD---FS 372
Query: 316 KLIEPLNHH 324
L +P++ H
Sbjct: 373 PLEQPVSKH 381
>sp|Q04Z09|MURD_LEPBL UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550)
GN=murD PE=3 SV=1
Length = 462
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 136/297 (45%), Gaps = 58/297 (19%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ +TGT+GKST + V +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K
Sbjct: 147 EPISL---------AVLELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKL 196
Query: 148 HL-------FSHMVNTKL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+ S +V+ K+ LL FG +EAI
Sbjct: 197 KIADLQNPNHSLIVSEKIREKILNSTSVQCKLLSFGRATTSEAILDES------------ 244
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E +T+ F + +S+ L G HN N A A L+ IG E++ +
Sbjct: 245 --SSEIRTSKF----IYDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQ 291
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK 304
I PHR QI +G+++++DSK+TNL + G+ K + ++LGG+ K
Sbjct: 292 IPFFMGLPHRFQIAGEK-RGISFINDSKSTNLHSMLAGMSAWKNLDRTCLILGGRPK 347
>sp|Q04UG6|MURD_LEPBJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=murD PE=3 SV=1
Length = 462
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 93/297 (31%), Positives = 136/297 (45%), Gaps = 58/297 (19%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
V SE+D KI+ +TGT+GKST + V +L + GGNLG P +
Sbjct: 89 VFSEIDLGRFFFKG--KIIGITGTDGKSTTTSLVAHLLKKDFSDLKEGGNLGIPFTSFCK 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
I+L AV+E+SSYQ+E + VSV LNL PDHLERH+TM+NY K
Sbjct: 147 EPISL---------AVLELSSYQLEDSSPLDL-NVSVFLNLAPDHLERHETMENYFRAKL 196
Query: 148 HL-------FSHMVNTKL------------GLLPFGNQHLNEAIKGHRFNLAWIGAFPGV 188
+ S +V+ K+ LL FG +EAI
Sbjct: 197 KIADLQNPNHSLIVSEKIREKILNSTSVQCKLLSFGRATTSEAILDES------------ 244
Query: 189 KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E +T+ F + +S+ L G HN N A A L+ IG E++ +
Sbjct: 245 --SSEIRTSKF----IYDISRFYLP-----GTHNRENLAAAILASEA--IGGKPESIQAQ 291
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAK 304
I PHR QI +G+++++DSK+TNL + G+ K + ++LGG+ K
Sbjct: 292 IPFFMGLPHRFQIAGEK-RGISFINDSKSTNLHSMLAGMSAWKNLDRTCLILGGRPK 347
>sp|Q7V5V5|MURD_PROMM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Prochlorococcus
marinus (strain MIT 9313) GN=murD PE=3 SV=1
Length = 460
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 26/307 (8%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L Q G + E+ A + + + +A+TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LTALRQRGIDIDGEMAVAWRSLSH-LPWIAITGTNGKTTVTHLLNHVLESNGLRAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G+ +E A + +P + V+E+SSYQ+E + P + + NLTPDHLERH
Sbjct: 145 VGHAAAEVALKWRQPNAQRPDW--LVMELSSYQIEAAPE-IAPRMGIWTNLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA-FPGVKIDTEAKT 196
T+ Y K L +++ + + L L W+ + PG T
Sbjct: 202 TLDAYRTIKRGLLER---SEIRIFNGDDPDLRSQRSSWDKGL-WVSSEGPG----TANHR 253
Query: 197 ASFEVPAVGVVSQLQ-----LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEI 251
A F + A G+V + Q + + G+HN N + ++ G+ +A+ +++
Sbjct: 254 ADFWIDAEGLVREPQGALFAASALAMPGQHNLQN--LLLVTAAARQTGLPAKAIEASLRS 311
Query: 252 LRTPPHRM-QIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQE 310
PHR+ Q+ H IQ ++ +DSKATN +A C GL + V+L GGQ K G
Sbjct: 312 FPGVPHRLEQLGH--IQQMSVYNDSKATNYDAACVGLKAVP-PPAVVLAGGQTK--QGDA 366
Query: 311 SNGFEKL 317
S ++L
Sbjct: 367 SGWLKQL 373
>sp|Q31I61|MURD_THICR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Thiomicrospira
crunogena (strain XCL-2) GN=murD PE=3 SV=1
Length = 449
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 41/299 (13%)
Query: 20 CLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79
C+ Q G V+ +++ A+ + I +A+TG+NGKSTV T V + L G VGGN+G
Sbjct: 80 CINQ-GTEVIGDIELFARAAGKPI--VAITGSNGKSTVTTLVAEALKEAGYAVGVGGNIG 136
Query: 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV-SVVLNLTPDHLERHKT 138
P A + P+ +F V V+E+SS+Q+E Y T+ + VLN++ DH++R+
Sbjct: 137 CP----ALDLLTHPT---EFDVYVLELSSFQLE--TTYSLQTIAATVLNISEDHMDRYLA 187
Query: 139 MKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP----GVKIDT 192
+++Y K + + NT+L +LP + + A G RF L + A P G+ +
Sbjct: 188 LEDYIQAKMTILN---NTELAVLPLDFERVGIARPGDEVRFGLNYAEALPPKEYGIVMKN 244
Query: 193 EAKTASFE----VPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+E VP + Q G H+ NA A+ L +
Sbjct: 245 GQAWLGWEDHASVPVTAMAQQ---------GLHHQLNA--LAMMALCRPFDLSDAVFEKV 293
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAK 304
++ + PHR Q+V +GV W++DSK TN+ AT T + +K + +++ GG K
Sbjct: 294 LKTFKGLPHRTQVVLEQ-EGVRWINDSKGTNVGATVTAIESIKETLDGQVILIAGGVGK 351
>sp|Q01Q46|MURD_SOLUE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Solibacter
usitatus (strain Ellin6076) GN=murD PE=3 SV=1
Length = 442
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 145/299 (48%), Gaps = 23/299 (7%)
Query: 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSE 84
G RV+ E++ AA + + + +TG+NGK+T + G +L G+ VGGN+G P++
Sbjct: 86 GVRVIGEVELAAPFL--KGRTIGITGSNGKTTTTSLTGHILREAGVPVQVGGNIGLPVT- 142
Query: 85 AAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYAL 144
A+ S V+E+SS+Q+E ++ F + + LN+T +HL+RH T +NYA
Sbjct: 143 ------AMVESSRDDGWNVLELSSFQLETIHE-FRAHIGLALNVTQNHLDRHHTFENYAA 195
Query: 145 TKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAV 204
K LF +L + R + W + K+D A ++
Sbjct: 196 IKGRLFETQQAGDYAVLNAEDPVCVAYAARTRATVQWFSSRK--KVDPGATLCGNKLVLF 253
Query: 205 GVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
G + ++ + + GRHN N V A ++ GV+ A+ + + R HR++ V R
Sbjct: 254 GKL-LMEAGEIPIRGRHNIEN--VLAAAIAASRAGVEHAAIAAAVRSFRAVEHRLEFV-R 309
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323
+ GV + +DSKAT+++AT L G VI LGG+ K L+ + L EPL
Sbjct: 310 KLNGVDFYNDSKATSVDATLKALDAFPGGLWVI-LGGKDKGLD------YAALREPLTE 361
>sp|C4Z534|MURD_EUBE2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Eubacterium
eligens (strain ATCC 27750 / VPI C15-48) GN=murD PE=3
SV=1
Length = 450
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/262 (31%), Positives = 135/262 (51%), Gaps = 20/262 (7%)
Query: 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAV 103
KI+A+TGTNGK+T VGQ++ + FV GN+GN ++ L +S+ + VA
Sbjct: 109 KIIAITGTNGKTTTTALVGQIIAAYNEKTFVVGNIGN-----SYTGEVLKTSEDSYTVA- 162
Query: 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163
E+SS+Q+E ++ F P VS +LN+TPDHL RH TM+ YA TK + + +L
Sbjct: 163 -EISSFQLETVHE-FHPIVSAILNITPDHLNRHHTMECYAWTKERISENQTKADTCVLNL 220
Query: 164 GNQHLNEAIKGHRFNLAWIGA--FPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRH 221
+++L + + N+ W + P V + + + L +H+M ++G+H
Sbjct: 221 EDKYLTDFAPECKANVVWFSSERKPSVGAYVDGEMIKY-TDGTNDYDMLNVHDMNLLGKH 279
Query: 222 NYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATN 279
NY N AA+A G+ + +E ++ + HR++ V GV + +DSK TN
Sbjct: 280 NYENVCAAIAMTKAAGIPDDIIIE----QVKKFKAVEHRIEYVATK-NGVDYYNDSKGTN 334
Query: 280 LEATCTGLMDLKGHKCVILLGG 301
EA + + K IL+GG
Sbjct: 335 PEAAVKAIEAMV--KPTILIGG 354
>sp|A6TS63|MURD_ALKMQ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Alkaliphilus
metalliredigens (strain QYMF) GN=murD PE=3 SV=1
Length = 455
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 149/302 (49%), Gaps = 39/302 (12%)
Query: 12 QLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71
Q+KA G+ ++ E++ A + + R KI+A+TGTNGK+T G++ G
Sbjct: 89 QIKAQGI--------EIIGEVELAFR-LSRG-KIVAITGTNGKTTTTALTGEIFKGAGKN 138
Query: 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPD 131
+V GN+G P E A + V V+EVSS+Q+E K F P V +LNLTPD
Sbjct: 139 TYVVGNIGVPFIEKALDT-------TEEDVIVIEVSSFQLE-SIKEFHPKVGTLLNLTPD 190
Query: 132 HLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA--------IKGHRFNLAWIG 183
HL RHKT++NY K +LF + +L + + EA I R + G
Sbjct: 191 HLNRHKTIENYREAKLNLFMNQSLQDYAVLNYDDITSREAGKTLAAQKIYFSRKQILEEG 250
Query: 184 AFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242
F ++ T + K ++V + + +K++G+HN NA A + + +GV
Sbjct: 251 VFVDNQLITIQTKEKRYDV--------IHIDEIKILGQHNLENALAA--TAMTFILGVSA 300
Query: 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ 302
E + + HR++ V +I+GV +++DSK TN +A+ + + ++L GGQ
Sbjct: 301 EDIAKGLRNFPGVAHRLEFVE-EIEGVKYINDSKGTNTDASIKAIEAAQA-PIILLAGGQ 358
Query: 303 AK 304
K
Sbjct: 359 DK 360
>sp|Q5FUJ7|MURD_GLUOX UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Gluconobacter
oxydans (strain 621H) GN=murD PE=3 SV=2
Length = 448
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 135/302 (44%), Gaps = 42/302 (13%)
Query: 25 GKRVMSELDFAAQVIPRS---IKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
G +++S+ + + + +S +AVTGTNGKST + + G GGNLG
Sbjct: 91 GIQILSDAEILYRAVRKSGSKAAFIAVTGTNGKSTTTALIAHLFTTAGRPCAAGGNLGT- 149
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
+ALP P V V+E+SSY +E +++ + +LNLTPDHL+RH M
Sbjct: 150 ------ASLALPL-LPDDGVYVIEMSSYMLERLDRFHA-NAACLLNLTPDHLDRHGDMAG 201
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
YA K H+F +M L ++ + W A I ++ + +V
Sbjct: 202 YAAAKAHVFDNMGPDDLAVIGMDDD--------------WCRA-----IASQVASRGVQV 242
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
+ + + GRHN N V A + +G+D A+ + ++ HR+Q
Sbjct: 243 VELDADALPPYDGPALPGRHNAQN--VGAALTIASHLGLDEAAIRTGLKSFPGLEHRLQK 300
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321
V + GV++++DSKATN EA L K + + GG AK + G E L
Sbjct: 301 V-AECDGVSFINDSKATNAEAVSKALAAYD--KVMWIAGGVAK------AGGIESLAPFF 351
Query: 322 NH 323
H
Sbjct: 352 RH 353
>sp|Q4FQ21|MURD_PSYA2 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Psychrobacter
arcticus (strain DSM 17307 / 273-4) GN=murD PE=3 SV=1
Length = 476
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 137/281 (48%), Gaps = 44/281 (15%)
Query: 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQV 101
++ I+A+TG+N KSTV T VGQM GI VGGN+G P ++L S+ K ++
Sbjct: 114 TVPIVAITGSNAKSTVTTLVGQMAADAGINVGVGGNIGVP-------ALSLLSND-KMEL 165
Query: 102 AVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLF----SHMVNTK 157
AV+E+SS+Q+E V+ VLN++PDHL+RH M Y K +F S ++N +
Sbjct: 166 AVIELSSFQLETVTN-LGAQVATVLNMSPDHLDRHGDMLGYHQAKHRIFQGAKSVVINRE 224
Query: 158 LGL--------LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQ 209
L LP + ++ KGH G+ D +T A G
Sbjct: 225 DALTRPLVSDSLPRLSTGIHAPNKGHY----------GLITDAAGQT----YLARGTERL 270
Query: 210 LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGV 269
+ +K+ GRHN A LG G+ +E++ ST++ HR Q V I G+
Sbjct: 271 ISADKLKIKGRHN--LLNAQAALALGELAGLPLESMLSTLQQFAGLEHRCQYV-ATIAGI 327
Query: 270 TWVDDSKATNLEATCTGLMDL------KGHKCVILLGGQAK 304
+ +DSK TN+ +T + L K K +++LGGQ K
Sbjct: 328 DYFNDSKGTNIGSTMAAVEGLGAVYAPKDGKLLLILGGQGK 368
>sp|Q7MNV3|MURD_VIBVY UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
vulnificus (strain YJ016) GN=murD PE=3 SV=1
Length = 442
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 62/327 (18%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+L G V+ +++ A + ++A+TG+NGKSTV G M N G++ +GGN+G
Sbjct: 88 VLARGVAVVGDIELFAWAADK--PVIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGV 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + + ++ V+E+SS+Q+E + LNL+ DH++R++ M
Sbjct: 146 P---------ALDLLEQEVELYVLELSSFQLETTTSLHL-VAAAFLNLSEDHMDRYQGMD 195
Query: 141 NYALTKCHLFSH----MVN--------------TKLGLLPFGNQHLNEAIKGHRFNLAWI 182
+Y K +F H +VN L L+ FG+ + H+ +W+
Sbjct: 196 DYRQAKLRIFQHAKHGVVNRDDRQTYPETSHGQQSLALVTFGSDDKEFGVMSHQGE-SWL 254
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGV 240
+ + AS E +K++G+HN N V A L+ G+D
Sbjct: 255 ------SYNQQPILASRE--------------LKLVGQHNVANVLVVLALLTCAGIDYRK 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILL 299
+ AL S + HR Q+V D +G+ WV+DSKATNL +T L L K +L+
Sbjct: 295 GLSALKSYTGL----THRCQVV-ADNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLV 349
Query: 300 GGQAKVLNGQESNGFEKLIEPLNHHRC 326
GG K G + + + ++ LN C
Sbjct: 350 GGDGK---GADFSPLKPILAQLNLQLC 373
>sp|Q1RI52|MURD_RICBR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rickettsia
bellii (strain RML369-C) GN=murD PE=3 SV=1
Length = 450
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 145/288 (50%), Gaps = 35/288 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+ S++D + + + +LAVTGTNGKST + +L+ G++ V GN+G P+ +A
Sbjct: 90 ITSDIDLFFEK-SKGLNLLAVTGTNGKSTTTALISHILSDNGLDYPVAGNIGVPVLQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M+ Y K
Sbjct: 147 -----KASKGGY---VLELSSFQLDLV-KTFAAKIAVLLNITPDHLDRHENMEGYITAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA---------IKGHRFNLAWIGAFPGVKIDTEAKTAS 198
+F M G++ N + +E IK F++ I G+ I + T +
Sbjct: 198 KIFDRMDKDSYGIINIDNDYCHEIFTNLQQKHHIKLIPFSVTKILE-KGISIVNDIITDN 256
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHN--AAVAALSVLGLDIGVDVEALNSTIEILRTPP 256
F +S + N + G HN N A+ A ++GL+ +E+++S + P
Sbjct: 257 F----FEHISFKLISNKSLQGIHNSENIAASYAVARIIGLEPVKIIESISS----FQGLP 308
Query: 257 HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
HRMQ + +I + + +DSKA+N A + L L GG AK
Sbjct: 309 HRMQYL-GNIDDINFYNDSKASNAIAAVQSIKALDN--IYWLAGGIAK 353
>sp|Q8DEK8|MURD_VIBVU UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
vulnificus (strain CMCP6) GN=murD PE=3 SV=1
Length = 442
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 62/327 (18%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
+L G V+ +++ A + ++A+TG+NGKSTV G M N G++ +GGN+G
Sbjct: 88 VLARGVAVVGDIELFAWAADK--PVIAITGSNGKSTVTDLTGVMANACGVKCAIGGNIGV 145
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMK 140
P AL + + ++ V+E+SS+Q+E + + LNL+ DH++R++ M
Sbjct: 146 P---------ALDLLEQEVELYVLELSSFQLETTSSLHL-VAAAFLNLSEDHMDRYQGMD 195
Query: 141 NYALTKCHLFSH----MVN--------------TKLGLLPFGNQHLNEAIKGHRFNLAWI 182
+Y K +F H +VN L L+ FG+ + H+ +W+
Sbjct: 196 DYRQAKLRIFQHAKHGVVNRDDRQTYPETSHGQQSLALVTFGSDDKEFGVISHQGE-SWL 254
Query: 183 GAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV--AALSVLGLDIGV 240
+ + AS E +K++G+HN N V A L+ G+D
Sbjct: 255 ------SYNQQPILASRE--------------LKLVGQHNVANVLVVLALLTCAGIDYRK 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILL 299
+ AL S + HR Q+V D +G+ WV+DSKATNL +T L L K +L+
Sbjct: 295 GLSALKSYTGL----THRCQVV-ADNRGIKWVNDSKATNLASTQAALSGLNCAGKLYLLV 349
Query: 300 GGQAKVLNGQESNGFEKLIEPLNHHRC 326
GG K G + + + ++ LN C
Sbjct: 350 GGDGK---GADFSPLKPILAQLNLQLC 373
>sp|Q3AHP0|MURD_SYNSC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus
sp. (strain CC9605) GN=murD PE=3 SV=1
Length = 461
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/296 (29%), Positives = 142/296 (47%), Gaps = 28/296 (9%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
L L G +V E+D A + + I + +TGTNGK+TV + +L G+ A +GGN
Sbjct: 86 LVQLRSEGVQVRGEMDTAWDAL-QQIPWIGITGTNGKTTVTHLLSHVLEAAGLTAPMGGN 144
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G LS A C +KP+ V+E+SSYQ+E P + + LTPDHLERH
Sbjct: 145 IG--LSAAELACQIGSGAKPRPDWLVMELSSYQIEAA-PAVAPKIGIWTTLTPDHLERHG 201
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLA-WI---GAFPGVKIDTE 193
+++ Y K L ++ L + L + + +N W+ GA P +
Sbjct: 202 SLEAYRAIKRGLLER---SECALFNADDPDLRQ--QRSSWNRGTWVSSEGAHP------D 250
Query: 194 AKTASFEVPAVGVV--SQLQLHNMKVM---GRHNYHNAAVAALSVLGLDIGVDVEALNST 248
+ A + G+V + +L V+ GRHN N + ++ L+ G+ + +
Sbjct: 251 NQPADLWIDDEGMVRNNTTRLFAADVLAMPGRHNRQN--LLLVTAAALEAGLSPQQIADA 308
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
+ PHR++ + + G + +DSKATN +A GL ++G V+L GGQ K
Sbjct: 309 LRTFPGVPHRLEQLGT-LAGASVFNDSKATNYDAAEVGLRAVQG-PVVVLAGGQTK 362
>sp|Q3AAE4|MURD_CARHZ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=murD PE=3
SV=1
Length = 451
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 151/304 (49%), Gaps = 17/304 (5%)
Query: 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFV 61
W L + L +A L+ G V+ E++ A + + I+AVTGTNGK+T +++
Sbjct: 69 WELLVVSPGVPLTEEPIAYSLKEGIPVLGEIELAYKEL--KAPIIAVTGTNGKTTTTSWI 126
Query: 62 GQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPT 121
G++L G + + GN+G PL EA + ++ +EVSS+Q+E K F P
Sbjct: 127 GEVLKIAGFKTLIAGNIGYPLIEAV---------EEEWDAVSLEVSSFQLETI-KSFKPK 176
Query: 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAW 181
V+V+LNLTPDHL+RHKT++ Y K +F + T + +L + + + + + +
Sbjct: 177 VAVLLNLTPDHLDRHKTLEGYLEAKARIFINQDRTDVTVLNYDDPRIRSLGRKTPGRVFY 236
Query: 182 IGAFPGVKIDTEAKTASFEVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240
++ K V ++GV + + + N+ + G HN NA + GV
Sbjct: 237 FSQKEELEEGVFVKKGKIVVRSLGVEEEIIDIENLPLPGPHNLENALATVAACWSF--GV 294
Query: 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLG 300
+ + + + HR++ V +I GV +V+DSK TN ++T L + V++ G
Sbjct: 295 SGKNIERGLRNFQGVAHRLEKVA-EINGVLYVNDSKGTNPDSTIKALNSYE-RPIVLIAG 352
Query: 301 GQAK 304
G+ K
Sbjct: 353 GRNK 356
>sp|B5FB37|MURD_VIBFM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio fischeri
(strain MJ11) GN=murD PE=3 SV=1
Length = 440
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 151/294 (51%), Gaps = 44/294 (14%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
+ G +++ +++ A + + ++A+TG+NGKSTV G+M G++ VGGN+G
Sbjct: 89 IDKGIQIVGDIELFAWAV--NAPVIAITGSNGKSTVTDLTGEMAKAAGVKTAVGGNIG-- 144
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
AL + ++ V+E+SS+Q+E + + LNL+ DH++R++ M +
Sbjct: 145 -------FAALDLLEQDAELYVLELSSFQLETTSTLKLK-AAAFLNLSEDHMDRYQGMAD 196
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQH----LNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
Y K +F H ++ ++ ++ + + +K F+ G I+ AK A
Sbjct: 197 YRQAKLRIFDH---AEVCIVNRDDKQTYPDVEKTLKSFGFDQGDYGCIEKDGIEYLAKDA 253
Query: 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNA--AVAALSVLGLDIGVDVEALNSTIEILRTP 255
+S L + + ++G+HN N+ A+A L +G++ L++T++ LRT
Sbjct: 254 ---------MSLLAANELGLVGKHNIANSLVAIALLDAVGIN-------LDATLDTLRTY 297
Query: 256 ---PHRMQIVHRDIQGVTWVDDSKATNLEATCTGL--MDLKGHKCVILLGGQAK 304
HR Q+V D G+ WV+DSKATN+ +T L + L+G K +L+GG K
Sbjct: 298 NGLTHRCQVV-ADNNGIRWVNDSKATNVASTLAALSGLQLEG-KLHLLVGGVGK 349
>sp|Q64ZL9|MURD_BACFR UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacteroides
fragilis (strain YCH46) GN=murD PE=3 SV=1
Length = 444
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 152/310 (49%), Gaps = 40/310 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K G
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---G 353
Query: 309 QESNGFEKLI 318
+ E+L+
Sbjct: 354 NDYTEIEELV 363
>sp|Q5LIJ5|MURD_BACFN UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Bacteroides
fragilis (strain ATCC 25285 / NCTC 9343) GN=murD PE=3
SV=1
Length = 444
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 81/310 (26%), Positives = 152/310 (49%), Gaps = 40/310 (12%)
Query: 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80
L + G ++SE++FA + K++ +TG+NGK+T + + + G+ + GN+G
Sbjct: 82 LREQGTPIISEIEFAGRYT--DAKMICITGSNGKTTTTSLIYHIFKSAGLNVGLAGNIGK 139
Query: 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKY-FCPTVSVVLNLTPDHLERHK-T 138
L AL ++ K V+E+SS+Q++ N Y F ++V++N+TPDHL+R+
Sbjct: 140 SL--------ALQVAEEKHDYYVIELSSFQLD--NMYNFRADIAVLMNITPDHLDRYDHC 189
Query: 139 MKNYALTKCHLFSHMVNTKLGLL----PFGNQHLNE-AIKGHRFNLAWIGAFPGVKIDTE 193
M+NY K + + + + P + L++ I+ H +P I E
Sbjct: 190 MQNYINAKFRITQNQTSEDAFIFWNDDPIIKRELDKHGIRAH--------LYPFSAIKEE 241
Query: 194 AKTASFEVPAVGVVS----QLQLHNMKVMGRHNYHNAAVAALSV-LGLDIGVDVEALNST 248
A E V + ++ + + G+HN +N+ A +S L G+ E +
Sbjct: 242 GSIAYVEDHEVVITEPIAFNMEQEQLALTGQHNLYNSLAAGISANLA---GITKEDIRKA 298
Query: 249 IEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308
+ + HR++ V R ++G+ +++DSKATN+ + L + K V++LGG+ K G
Sbjct: 299 LSDFQGVEHRLEKVAR-VRGIDFINDSKATNVNSCWYALQSMTT-KTVLILGGKDK---G 353
Query: 309 QESNGFEKLI 318
+ E+L+
Sbjct: 354 NDYTEIEELV 363
>sp|Q4ULT8|MURD_RICFE UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rickettsia felis
(strain ATCC VR-1525 / URRWXCal2) GN=murD PE=3 SV=1
Length = 449
Score = 101 bits (251), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 125/256 (48%), Gaps = 22/256 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++ +AVTGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLNFIAVTGTNGKSTTTALISHILNSNGLDYPVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + ++E+SS+Q+++ K F ++V+LN+TPDHL+RH+ M Y K
Sbjct: 147 -----KASKDGY---ILELSSFQLDLV-KTFTAKIAVLLNITPDHLDRHQDMTGYIAAKS 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEAI----KGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203
+F M + N + E + R L F KI + +
Sbjct: 198 KIFDRMDKDSYAAINIDNYYCREIFMLLQQEQRIKLI---PFSVTKILKNGISVVGDKIN 254
Query: 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263
+S N + G HN N +AA + IGV+ + + +I ++ PHRMQ +
Sbjct: 255 DNDISYKLPFNKNLQGTHNCEN--IAASYAVAKIIGVESKKILESISSFQSLPHRMQYIG 312
Query: 264 RDIQGVTWVDDSKATN 279
I + + +DSKATN
Sbjct: 313 S-INNIGFYNDSKATN 327
>sp|Q68WW9|MURD_RICTY UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Rickettsia typhi
(strain ATCC VR-144 / Wilmington) GN=murD PE=3 SV=1
Length = 457
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 140/277 (50%), Gaps = 23/277 (8%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++S++D + +++K +A+TGTNGKST + +LN G++ V GN+G P +A
Sbjct: 90 IISDIDLLFEK-SKNLKFIAITGTNGKSTTAALISHILNSNGLDYTVAGNIGVPALQA-- 146
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+SK + V+E+SS+Q+++ K F V+V+LN+TPDHL+R++ M Y K
Sbjct: 147 -----KASKDGY---VLELSSFQLDLV-KIFTVKVAVLLNITPDHLDRYQDMNGYIAAKA 197
Query: 148 HLFSHMVNTKLGLLPFGNQHLNEA-IKGHRFNLAWIGAFPGVKI-DTEAKTASFEVPAVG 205
+F M ++ N + + + R L + F KI + ++
Sbjct: 198 KIFDRMDKDSYAVINIDNDYCRKIFLLLQREQLIKLIPFSVTKILNNGISIVDDKIHDNN 257
Query: 206 VVSQLQLHNMKVMGRHNYHN-AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264
+ +L L N + G HN N AA A+S + IGV+ + + +I ++ HRMQ +
Sbjct: 258 LTYKLPL-NKNLQGLHNCENIAASYAVSKI---IGVESKKILESISSFQSLHHRMQYIGS 313
Query: 265 DIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGG 301
I +++ +DSKATN + L +K + L G
Sbjct: 314 -INNISFYNDSKATN---AISALQSIKALDNIYWLAG 346
>sp|B0K3H2|MURD_THEPX UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter sp. (strain X514) GN=murD PE=3
SV=1
Length = 454
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 151/298 (50%), Gaps = 34/298 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 95 LLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV- 151
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 ----MEAAEDDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIKG 204
Query: 148 HLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+F + + +L + N+ R +L GA+ K S
Sbjct: 205 RIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGSI 256
Query: 200 EVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ G + + + + + G HN N A+AA SV L G+ + + +T++ + HR
Sbjct: 257 YISVNGNAEKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISADVIANTLKTFKGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316
++ V +I GV + +DSK TN +A+ + LK V++ GG K G E + F K
Sbjct: 315 IEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSEFDEFVK 367
>sp|Q9KPG5|MURD_VIBCH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=murD PE=3 SV=2
Length = 440
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 152/324 (46%), Gaps = 53/324 (16%)
Query: 2 WML-WLFLLEFQLKATGLAC-------LLQSGKRVMSELD-FAAQVIPRSIKILAVTGTN 52
W L WL + + G+A +L +G V+ +++ FA V ++A+TG+N
Sbjct: 61 WNLEWLLNADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHV---DTPVIAITGSN 117
Query: 53 GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQME 112
GKSTV G + N G++A VGGN+G P AL P ++ V+E+SS+Q+E
Sbjct: 118 GKSTVTDLSGVLANAAGVKAAVGGNIGVP---------ALDLISPDVELYVLELSSFQLE 168
Query: 113 IPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSH----MVNT-KLGLLPFGNQH 167
+ + LNL+ DH++R++ M++Y K +F H +VN P H
Sbjct: 169 TTSSLKL-KAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDHAETAVVNADDTQTFPDHAAH 227
Query: 168 LNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNY 223
L G +F+LA + EA A E + ++GRHN
Sbjct: 228 LQVVTFGVEQAAQFSLAQHQGREYLFARDEAVMACAE--------------LSLVGRHNV 273
Query: 224 HN--AAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLE 281
N +A L G++ + ++AL S + HR Q+V D G+ WV+DSKATN+
Sbjct: 274 ANVLTVLALLDSAGVNFRLALDALKSYTGL----THRCQVV-ADNHGIKWVNDSKATNVA 328
Query: 282 ATCTGLMDLKGH-KCVILLGGQAK 304
+T L LK + +L+GG K
Sbjct: 329 STLAALSGLKIEGQLYLLVGGVGK 352
>sp|B0K8K5|MURD_THEP3 UDP-N-acetylmuramoylalanine--D-glutamate ligase
OS=Thermoanaerobacter pseudethanolicus (strain ATCC
33223 / 39E) GN=murD PE=3 SV=1
Length = 454
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 154/304 (50%), Gaps = 37/304 (12%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
++ E++FA + I A+TGTNGK+T + +G+M + G + +V GN+G PL A
Sbjct: 95 LLGEVEFAYRF--SKAPIYAITGTNGKTTTTSLLGEMFKNTGRKVYVAGNIGYPLIYAV- 151
Query: 88 HCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKC 147
+ +++ F VA E+SS+Q+E K F P +S ++N+TPDHL+RHKT +NY K
Sbjct: 152 ----MEAAEGDFIVA--EISSFQLETI-KEFKPKISCIINITPDHLDRHKTFENYRDIKG 204
Query: 148 HLFSHMVNTKLGLLPFG--------NQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASF 199
+F + + +L + N+ R +L GA+ K S
Sbjct: 205 RIFENQREDEYTVLNYDDPVTWSLKNKAKCRVFPFSRKSLLENGAY--------IKDGSI 256
Query: 200 EVPAVGVVSQ-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
+ G + + + + + G HN N A+AA SV L G+ + + +T++ + HR
Sbjct: 257 YISVNGNAEKIIDIEEIYIPGEHNLEN-ALAASSVAYLS-GISADVIANTLKTFKGVEHR 314
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
++ V +I GV + +DSK TN +A+ + LK V++ GG K G E F++ +
Sbjct: 315 IEFVD-EINGVKFYNDSKGTNPDASIKAIQALK-TPIVLIAGGYDK---GSE---FDEFV 366
Query: 319 EPLN 322
+ N
Sbjct: 367 KAFN 370
>sp|Q8DVE3|MURD_STRMU UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
mutans serotype c (strain ATCC 700610 / UA159) GN=murD
PE=3 SV=1
Length = 451
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 152/300 (50%), Gaps = 29/300 (9%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L+ V++E++ A + I+ +TG+NGK+T T + +LNH G A + GN+G P
Sbjct: 93 LEKNIPVITEVELAYLI--SEAPIIGITGSNGKTTTTTMIADVLNHAGQSARLSGNIGFP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
SE +A P ++ + V+E+SS+Q+ + + F P ++V+ NL P H++ H + +N
Sbjct: 151 ASE-----VAQPVTEK--DILVMELSSFQL-MGTESFHPHMAVITNLMPTHIDYHGSFEN 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT---EAKTAS 198
Y K ++ +M +L F NQ L + + ++ I K+D + +
Sbjct: 203 YIEAKWNIQKNMTKEDFLVLNF-NQDLAKDL-ANQTQAKIIPFSTKEKVDGAYLDGQMLC 260
Query: 199 FEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258
F+ A+ S+L V G HN N A+A ++V L GV EA+ T+ HR
Sbjct: 261 FKGQAIMSASEL-----GVPGSHNVEN-ALATIAVAKLS-GVSNEAIRETLIHFGGVKHR 313
Query: 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
+Q + +I GV + +DSK+TN+ AT L K +++ GG + N F++L+
Sbjct: 314 LQSLG-NIAGVKFYNDSKSTNILATQKALSGFDNSKVILIAGGLDR------GNEFDELV 366
>sp|B8DP81|MURD_DESVM UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Desulfovibrio
vulgaris (strain Miyazaki F / DSM 19637) GN=murD PE=3
SV=1
Length = 445
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 127/278 (45%), Gaps = 31/278 (11%)
Query: 28 VMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF 87
+M+E++ A + + +LAVTGT+GK+T V+ ML G+ F+GGN+G PLSE
Sbjct: 105 IMAEMELAWRQLDGE-PVLAVTGTSGKTTTVSLCAAMLRAQGLSVFLGGNIGTPLSEYVL 163
Query: 88 HCI-ALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTK 146
+ + V V+E+SS+Q++ F P V+++LN++ +HL+ H M Y K
Sbjct: 164 SVAHGGADGQGRADVLVIEISSFQLQACTT-FRPRVAMLLNISENHLDYHADMAEYIDAK 222
Query: 147 CHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGV 206
LF M L + G + L A D + +T F+ A
Sbjct: 223 FRLFRCMEEGDLAIFGQGVRDLVAA------------------RDLKPRTLFFDAAA--- 261
Query: 207 VSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266
+ ++G HN N A + + GV EA + HR++ V +
Sbjct: 262 ---RRFPRTCLLGGHNQANIEAAWQAC--REFGVTPEAAEKAVADFAPMEHRLEAVA-ER 315
Query: 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAK 304
GV WV+DSK T +EA L V+++GG+ K
Sbjct: 316 NGVLWVNDSKCTTVEALRVALQAFD-RPVVLMVGGKFK 352
>sp|C1CJF2|MURD_STRZP UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain P1031) GN=murD PE=3 SV=1
Length = 450
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 23/297 (7%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELV 366
>sp|C1C648|MURD_STRP7 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Streptococcus
pneumoniae (strain 70585) GN=murD PE=3 SV=1
Length = 450
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 146/297 (49%), Gaps = 23/297 (7%)
Query: 22 LQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81
L G V++E++ A + I+ +TG+NGK+T T +G++L G + GN+G P
Sbjct: 93 LAKGIPVLTEVELAYLI--SEAPIIGITGSNGKTTTTTMIGEVLTAAGQHGLLSGNIGYP 150
Query: 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKN 141
S+ A + S K V+E+SS+Q+ + + F P ++V+ NL P H++ H +
Sbjct: 151 ASQVA----QIASDKDTL---VMELSSFQL-MGVQEFHPEIAVITNLMPTHIDYHGSFSE 202
Query: 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEV 201
Y K ++ + M +L F NQ L + + A + F ++ A ++
Sbjct: 203 YVAAKWNIQNKMTAADFLVLNF-NQDLAKDLTSK--TEATVVPFSTLEKVDGAYLEDGQL 259
Query: 202 PAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQI 261
G V + + + V G HN N A+A ++V L GVD + + T+ HR+Q
Sbjct: 260 YFRGEVV-MAANEIGVPGSHNVEN-ALATIAVAKLR-GVDNQTIKETLSAFGGVKHRLQF 316
Query: 262 VHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLI 318
V DI+GV + +DSK+TN+ AT L K V++ GG + N F++L+
Sbjct: 317 VD-DIKGVKFYNDSKSTNILATQKALSGFDNSKVVLIAGGLDR------GNEFDELV 366
>sp|Q87SG6|MURD_VIBPA UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=murD PE=3 SV=1
Length = 437
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 148/320 (46%), Gaps = 47/320 (14%)
Query: 18 LACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77
+ +L G V+ +++ A + + + +A+TG+NGKSTV G M G+ VGGN
Sbjct: 85 IQTVLAKGTPVVGDIELFAWAVNKPV--VAITGSNGKSTVTDLTGVMAKAAGLTVGVGGN 142
Query: 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHK 137
+G P AL + + V+E+SS+Q+E + + LNL+ DH++R++
Sbjct: 143 IGVP---------ALELLEQDADLYVLELSSFQLETTSSLKL-KAAAFLNLSEDHMDRYE 192
Query: 138 TMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTA 197
M +Y K +F H +L ++ +Q ++ P V ++ +
Sbjct: 193 GMADYRAAKLRIFDH---AELAVVNRDDQETYPEVE-----------MPVVTFGSDEQAY 238
Query: 198 SFEVPAVGVVSQLQLH--------NMKVMGRHNYHNAAV--AALSVLGLDIGVDVEALNS 247
EV G + L H +K++G+HN NA V A L G+D + AL +
Sbjct: 239 GLEVD--GSRTWLLDHGQRVIASDELKLVGKHNLANALVVLALLKAAGVDYHNALNALKN 296
Query: 248 TIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGH-KCVILLGGQAKVL 306
+ HR Q+V D +GV WV+DSKATN+ +T L L+ K +L+GG K
Sbjct: 297 YTGL----THRCQVV-ADNRGVKWVNDSKATNIASTMAALSGLESTGKLYLLVGGVGK-- 349
Query: 307 NGQESNGFEKLIEPLNHHRC 326
G + + + LN C
Sbjct: 350 -GADFTPLKPIFATLNLQLC 368
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,099,370
Number of Sequences: 539616
Number of extensions: 4785037
Number of successful extensions: 14839
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 399
Number of HSP's that attempted gapping in prelim test: 12800
Number of HSP's gapped (non-prelim): 1242
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)