Query 020059
Match_columns 331
No_of_seqs 244 out of 1267
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 06:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020059.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020059hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0771 MurD UDP-N-acetylmuram 100.0 1.8E-58 3.9E-63 431.3 31.6 296 2-324 70-369 (448)
2 TIGR01087 murD UDP-N-acetylmur 100.0 5.2E-57 1.1E-61 432.4 33.7 294 2-323 63-356 (433)
3 PRK01368 murD UDP-N-acetylmura 100.0 7.2E-57 1.6E-61 431.0 33.6 303 2-328 64-371 (454)
4 PRK04663 murD UDP-N-acetylmura 100.0 2.9E-56 6.2E-61 427.1 33.1 292 2-322 69-362 (438)
5 PRK04308 murD UDP-N-acetylmura 100.0 1.7E-55 3.7E-60 423.1 33.5 305 2-329 68-374 (445)
6 PRK03803 murD UDP-N-acetylmura 100.0 2.1E-55 4.5E-60 422.8 33.5 300 2-329 69-376 (448)
7 PRK03369 murD UDP-N-acetylmura 100.0 5.2E-55 1.1E-59 422.6 33.1 301 3-329 72-381 (488)
8 PRK01710 murD UDP-N-acetylmura 100.0 2.2E-54 4.7E-59 416.2 32.8 302 2-329 78-381 (458)
9 PRK00141 murD UDP-N-acetylmura 100.0 4.5E-54 9.8E-59 414.8 34.2 302 3-328 76-386 (473)
10 PRK02472 murD UDP-N-acetylmura 100.0 3.9E-54 8.5E-59 414.3 33.5 305 2-329 69-373 (447)
11 PRK02705 murD UDP-N-acetylmura 100.0 6.7E-54 1.5E-58 413.9 34.2 306 2-328 69-379 (459)
12 PRK03806 murD UDP-N-acetylmura 100.0 8.3E-54 1.8E-58 410.7 32.8 293 3-323 67-362 (438)
13 PRK04690 murD UDP-N-acetylmura 100.0 1.2E-53 2.7E-58 411.0 34.0 303 2-329 70-379 (468)
14 PRK01390 murD UDP-N-acetylmura 100.0 2.2E-53 4.8E-58 410.1 33.3 304 2-327 66-382 (460)
15 PRK01438 murD UDP-N-acetylmura 100.0 3.6E-53 7.8E-58 410.8 32.4 307 2-329 79-398 (480)
16 PRK14106 murD UDP-N-acetylmura 100.0 3.9E-52 8.4E-57 400.7 33.4 307 2-328 69-377 (450)
17 COG0773 MurC UDP-N-acetylmuram 100.0 2.1E-52 4.6E-57 386.4 30.0 307 2-329 67-386 (459)
18 TIGR01082 murC UDP-N-acetylmur 100.0 3.1E-52 6.7E-57 400.5 30.9 305 2-329 59-378 (448)
19 PRK00421 murC UDP-N-acetylmura 100.0 3.3E-52 7.2E-57 401.7 31.2 303 2-329 67-384 (461)
20 TIGR01081 mpl UDP-N-acetylmura 100.0 5.9E-52 1.3E-56 398.6 31.2 284 2-303 61-360 (448)
21 PRK02006 murD UDP-N-acetylmura 100.0 1.4E-51 3.1E-56 400.7 33.0 310 2-329 70-419 (498)
22 PRK10773 murF UDP-N-acetylmura 100.0 1.6E-52 3.5E-57 402.4 25.7 307 4-328 64-389 (453)
23 TIGR01143 murF UDP-N-acetylmur 100.0 2.1E-50 4.6E-55 384.5 25.6 272 42-329 73-361 (417)
24 PRK14093 UDP-N-acetylmuramoyla 100.0 4.6E-49 1E-53 380.8 24.7 275 41-329 106-406 (479)
25 COG0770 MurF UDP-N-acetylmuram 100.0 1.3E-48 2.8E-53 368.5 26.2 269 41-324 101-385 (451)
26 PRK14573 bifunctional D-alanyl 100.0 3.1E-48 6.7E-53 396.2 30.7 301 2-329 64-376 (809)
27 PRK03815 murD UDP-N-acetylmura 100.0 5.8E-48 1.3E-52 363.6 27.7 269 3-324 56-324 (401)
28 PRK00139 murE UDP-N-acetylmura 100.0 2E-46 4.4E-51 361.0 25.8 261 42-321 94-372 (460)
29 PRK00683 murD UDP-N-acetylmura 100.0 4.9E-46 1.1E-50 354.4 26.1 279 3-328 61-343 (418)
30 PRK11929 putative bifunctional 100.0 7.7E-46 1.7E-50 385.8 27.2 273 42-329 602-900 (958)
31 TIGR01085 murE UDP-N-acetylmur 100.0 2.5E-45 5.4E-50 354.3 27.8 275 42-329 84-391 (464)
32 PRK14022 UDP-N-acetylmuramoyla 100.0 2.8E-45 6.1E-50 355.0 23.0 264 41-322 108-391 (481)
33 PRK11930 putative bifunctional 100.0 6.3E-45 1.4E-49 372.7 25.2 271 41-329 105-396 (822)
34 PRK11929 putative bifunctional 100.0 2.4E-44 5.2E-49 374.6 25.5 271 41-322 110-408 (958)
35 TIGR01499 folC folylpolyglutam 100.0 1.6E-43 3.5E-48 335.2 23.9 271 31-323 3-328 (397)
36 COG0769 MurE UDP-N-acetylmuram 100.0 2.6E-42 5.7E-47 329.2 25.9 278 42-329 90-393 (475)
37 TIGR02068 cya_phycin_syn cyano 100.0 1.5E-40 3.3E-45 339.4 27.9 280 41-329 477-790 (864)
38 PLN02913 dihydrofolate synthet 100.0 3.3E-40 7.2E-45 319.3 25.4 286 29-329 58-428 (510)
39 COG0285 FolC Folylpolyglutamat 100.0 6.2E-40 1.3E-44 305.9 24.6 271 29-324 27-353 (427)
40 PRK10846 bifunctional folylpol 100.0 6.1E-40 1.3E-44 312.1 24.3 269 28-323 31-347 (416)
41 PLN02881 tetrahydrofolylpolygl 100.0 3.2E-37 6.8E-42 294.5 23.5 260 28-321 41-403 (530)
42 PRK14016 cyanophycin synthetas 100.0 1.6E-34 3.4E-39 290.2 16.4 251 7-261 445-726 (727)
43 PF08245 Mur_ligase_M: Mur lig 100.0 5.8E-33 1.2E-37 236.8 16.2 176 48-235 1-188 (188)
44 KOG2525 Folylpolyglutamate syn 100.0 4.2E-31 9E-36 243.3 15.7 253 41-323 70-390 (496)
45 PF02875 Mur_ligase_C: Mur lig 99.2 3.7E-11 8E-16 89.8 5.3 66 255-323 1-70 (91)
46 COG1703 ArgK Putative periplas 96.6 0.021 4.6E-07 51.2 9.7 118 41-169 49-204 (323)
47 PRK09435 membrane ATPase/prote 93.9 0.87 1.9E-05 42.2 11.3 115 41-165 54-205 (332)
48 cd01983 Fer4_NifH The Fer4_Nif 92.9 0.64 1.4E-05 33.7 7.4 30 46-75 2-33 (99)
49 COG1763 MobB Molybdopterin-gua 92.7 0.32 6.9E-06 40.1 5.8 38 43-80 2-41 (161)
50 PRK15453 phosphoribulokinase; 92.3 0.22 4.7E-06 44.8 4.7 29 41-69 3-33 (290)
51 cd02040 NifH NifH gene encodes 92.2 0.2 4.3E-06 44.7 4.5 31 44-74 2-34 (270)
52 TIGR03172 probable selenium-de 92.2 0.17 3.7E-06 44.2 3.9 33 45-77 1-33 (232)
53 PRK13232 nifH nitrogenase redu 91.4 0.29 6.2E-06 44.0 4.5 32 44-75 2-35 (273)
54 cd02117 NifH_like This family 91.3 0.3 6.5E-06 42.0 4.5 30 45-74 2-33 (212)
55 COG0132 BioD Dethiobiotin synt 90.7 0.37 8E-06 41.9 4.3 31 43-73 2-35 (223)
56 PRK13849 putative crown gall t 90.5 0.41 8.8E-06 42.0 4.5 31 44-74 2-35 (231)
57 PHA02518 ParA-like protein; Pr 90.4 0.41 8.8E-06 40.9 4.4 30 45-74 2-34 (211)
58 PRK13869 plasmid-partitioning 90.3 0.41 8.9E-06 45.7 4.8 34 42-75 120-156 (405)
59 PRK00652 lpxK tetraacyldisacch 90.3 0.4 8.8E-06 44.2 4.5 34 42-75 48-85 (325)
60 PRK13235 nifH nitrogenase redu 90.2 0.43 9.2E-06 42.9 4.6 31 44-74 2-34 (274)
61 PRK10037 cell division protein 90.2 0.43 9.4E-06 42.2 4.5 32 44-75 2-36 (250)
62 TIGR03029 EpsG chain length de 90.2 0.66 1.4E-05 41.6 5.8 34 41-74 101-137 (274)
63 PHA02519 plasmid partition pro 90.0 0.46 1E-05 45.0 4.8 35 42-76 105-142 (387)
64 COG2894 MinD Septum formation 89.9 0.37 8E-06 41.6 3.6 32 44-75 3-37 (272)
65 PF00485 PRK: Phosphoribulokin 89.9 0.34 7.3E-06 41.1 3.4 27 45-71 1-29 (194)
66 COG4240 Predicted kinase [Gene 89.8 0.54 1.2E-05 40.8 4.4 53 21-74 29-84 (300)
67 TIGR03371 cellulose_yhjQ cellu 89.7 0.51 1.1E-05 41.4 4.6 32 44-75 2-36 (246)
68 PRK13705 plasmid-partitioning 89.6 0.51 1.1E-05 44.8 4.7 34 42-75 105-141 (388)
69 TIGR01007 eps_fam capsular exo 89.6 0.78 1.7E-05 39.1 5.5 34 41-74 15-51 (204)
70 PRK14494 putative molybdopteri 89.6 0.52 1.1E-05 41.2 4.4 33 43-75 1-35 (229)
71 PRK13230 nitrogenase reductase 89.5 0.49 1.1E-05 42.6 4.4 31 44-74 2-34 (279)
72 COG0769 MurE UDP-N-acetylmuram 89.4 0.28 6.1E-06 47.7 2.8 122 13-138 35-161 (475)
73 COG2403 Predicted GTPase [Gene 89.1 0.45 9.7E-06 44.1 3.7 32 42-73 125-159 (449)
74 TIGR03453 partition_RepA plasm 88.8 0.63 1.4E-05 44.1 4.8 34 42-75 103-139 (387)
75 PRK13185 chlL protochlorophyll 88.8 0.63 1.4E-05 41.6 4.5 31 44-74 3-35 (270)
76 cd02032 Bchl_like This family 88.6 0.63 1.4E-05 41.5 4.4 29 46-74 3-33 (267)
77 PRK14493 putative bifunctional 88.3 0.74 1.6E-05 41.4 4.6 32 43-75 1-34 (274)
78 TIGR02016 BchX chlorophyllide 88.2 0.69 1.5E-05 42.2 4.4 30 45-74 2-33 (296)
79 TIGR00554 panK_bact pantothena 88.0 0.86 1.9E-05 41.4 4.8 27 41-67 60-88 (290)
80 cd02029 PRK_like Phosphoribulo 87.9 0.66 1.4E-05 41.5 4.0 28 45-72 1-30 (277)
81 PRK13234 nifH nitrogenase redu 87.7 0.81 1.7E-05 41.7 4.6 34 42-75 3-38 (295)
82 cd03116 MobB Molybdenum is an 87.7 0.98 2.1E-05 37.1 4.6 33 43-75 1-35 (159)
83 TIGR03018 pepcterm_TyrKin exop 87.4 1 2.2E-05 38.6 4.7 34 41-74 33-70 (207)
84 TIGR01968 minD_bact septum sit 87.4 0.83 1.8E-05 40.3 4.3 31 44-74 2-35 (261)
85 cd02033 BchX Chlorophyllide re 87.2 0.98 2.1E-05 41.8 4.8 35 41-75 29-65 (329)
86 TIGR01287 nifH nitrogenase iro 87.2 0.82 1.8E-05 41.0 4.3 30 45-74 2-33 (275)
87 PRK11670 antiporter inner memb 87.2 0.91 2E-05 42.8 4.7 33 42-74 106-141 (369)
88 PRK14495 putative molybdopteri 86.9 1.4 3.1E-05 42.1 5.7 34 43-76 1-36 (452)
89 PRK14974 cell division protein 86.6 1.1 2.5E-05 41.5 4.9 35 42-76 139-175 (336)
90 PF03205 MobB: Molybdopterin g 86.6 1 2.2E-05 36.1 4.1 31 44-74 1-33 (140)
91 PF06564 YhjQ: YhjQ protein; 86.2 0.74 1.6E-05 40.6 3.3 30 45-74 6-35 (243)
92 PRK13233 nifH nitrogenase redu 86.2 1.1 2.3E-05 40.3 4.4 32 44-75 3-37 (275)
93 TIGR01969 minD_arch cell divis 85.9 1.1 2.5E-05 39.2 4.4 30 45-74 2-34 (251)
94 PRK13231 nitrogenase reductase 85.8 0.6 1.3E-05 41.6 2.6 30 44-74 3-34 (264)
95 PRK13236 nitrogenase reductase 85.7 1.3 2.8E-05 40.4 4.7 33 42-74 5-39 (296)
96 COG1936 Predicted nucleotide k 85.6 0.73 1.6E-05 38.2 2.7 26 44-73 1-28 (180)
97 PRK07667 uridine kinase; Provi 85.6 2 4.3E-05 36.4 5.6 31 42-72 16-48 (193)
98 PF00448 SRP54: SRP54-type pro 85.6 0.84 1.8E-05 38.9 3.2 31 45-76 6-36 (196)
99 PRK00784 cobyric acid synthase 85.5 0.99 2.2E-05 44.2 4.2 30 44-73 3-35 (488)
100 PRK10416 signal recognition pa 85.5 1.3 2.9E-05 40.7 4.8 35 42-76 113-149 (318)
101 COG0552 FtsY Signal recognitio 85.5 1.2 2.6E-05 40.8 4.3 34 42-75 138-173 (340)
102 cd02037 MRP-like MRP (Multiple 85.3 1.1 2.5E-05 36.8 3.9 25 50-74 9-33 (169)
103 CHL00175 minD septum-site dete 85.3 1.4 3.1E-05 39.6 4.8 33 42-74 14-49 (281)
104 PF07015 VirC1: VirC1 protein; 85.2 1.4 3E-05 38.4 4.4 33 44-76 2-37 (231)
105 TIGR00064 ftsY signal recognit 85.1 1.4 3.1E-05 39.6 4.6 35 42-76 71-107 (272)
106 PF01656 CbiA: CobQ/CobB/MinD/ 85.1 1 2.2E-05 37.7 3.6 30 45-74 3-32 (195)
107 PRK10818 cell division inhibit 85.0 1.3 2.9E-05 39.5 4.5 31 44-74 3-36 (270)
108 COG1192 Soj ATPases involved i 85.0 1.4 3E-05 39.1 4.6 29 46-74 8-37 (259)
109 PRK06696 uridine kinase; Valid 84.8 2.2 4.9E-05 37.0 5.7 34 41-74 20-55 (223)
110 cd02028 UMPK_like Uridine mono 84.7 1.4 2.9E-05 37.0 4.1 29 45-73 1-31 (179)
111 PRK05439 pantothenate kinase; 84.6 1.9 4.1E-05 39.5 5.3 34 41-74 84-121 (311)
112 PRK09270 nucleoside triphospha 84.6 1.1 2.4E-05 39.1 3.6 43 28-71 19-63 (229)
113 TIGR00176 mobB molybdopterin-g 84.3 1.4 3E-05 36.1 3.8 32 45-76 1-34 (155)
114 COG1072 CoaA Panthothenate kin 84.2 2.1 4.5E-05 38.3 5.1 31 41-71 80-112 (283)
115 PRK10751 molybdopterin-guanine 83.6 1.9 4.1E-05 36.0 4.4 35 42-76 5-41 (173)
116 PRK12374 putative dithiobiotin 83.6 1.6 3.5E-05 38.1 4.3 31 45-75 4-37 (231)
117 cd03109 DTBS Dethiobiotin synt 83.4 2.5 5.4E-05 33.5 4.9 44 47-108 4-48 (134)
118 cd02025 PanK Pantothenate kina 82.9 1.7 3.7E-05 37.7 4.1 23 45-67 1-25 (220)
119 PF03308 ArgK: ArgK protein; 82.7 2.7 5.9E-05 37.3 5.2 115 41-167 27-180 (266)
120 COG3367 Uncharacterized conser 82.6 3.1 6.7E-05 38.0 5.6 36 42-77 147-185 (339)
121 TIGR00455 apsK adenylylsulfate 82.6 4 8.7E-05 34.0 6.2 41 30-71 6-48 (184)
122 COG3640 CooC CO dehydrogenase 82.3 1.7 3.7E-05 37.9 3.7 28 45-72 2-32 (255)
123 PF13500 AAA_26: AAA domain; P 82.3 1.8 3.8E-05 36.8 3.9 31 44-74 1-34 (199)
124 TIGR01281 DPOR_bchL light-inde 82.3 1.3 2.9E-05 39.4 3.3 26 49-74 8-33 (268)
125 TIGR00682 lpxK tetraacyldisacc 82.0 2.1 4.6E-05 39.3 4.5 34 42-75 27-64 (311)
126 cd02036 MinD Bacterial cell di 81.7 1.7 3.8E-05 35.7 3.6 29 47-75 6-34 (179)
127 COG0489 Mrp ATPases involved i 81.7 2.5 5.4E-05 37.9 4.8 33 42-74 56-91 (265)
128 KOG3022 Predicted ATPase, nucl 81.0 2.4 5.1E-05 37.9 4.2 31 44-74 48-81 (300)
129 PRK03846 adenylylsulfate kinas 80.6 4.8 0.0001 34.1 6.0 42 30-72 12-55 (198)
130 CHL00072 chlL photochlorophyll 80.6 1.7 3.6E-05 39.5 3.3 29 46-74 3-33 (290)
131 PRK01077 cobyrinic acid a,c-di 80.4 2.2 4.8E-05 41.4 4.3 32 43-74 3-37 (451)
132 PF09140 MipZ: ATPase MipZ; I 80.4 2.5 5.5E-05 37.3 4.2 30 45-74 2-34 (261)
133 KOG0780 Signal recognition par 79.9 3.8 8.3E-05 38.4 5.3 33 43-75 101-135 (483)
134 COG0572 Udk Uridine kinase [Nu 79.0 2 4.3E-05 37.1 3.1 26 43-68 8-35 (218)
135 cd02042 ParA ParA and ParB of 78.7 3 6.5E-05 31.0 3.7 47 45-109 4-50 (104)
136 PRK00090 bioD dithiobiotin syn 78.5 2.9 6.4E-05 36.0 4.1 28 47-74 3-33 (222)
137 PRK14489 putative bifunctional 78.2 3.2 6.9E-05 39.0 4.5 36 42-77 204-241 (366)
138 PRK01906 tetraacyldisaccharide 77.9 3.5 7.7E-05 38.3 4.6 33 42-74 55-91 (338)
139 COG1797 CobB Cobyrinic acid a, 77.9 5.8 0.00013 37.8 6.0 27 46-72 3-32 (451)
140 COG0541 Ffh Signal recognition 77.5 3.1 6.8E-05 39.6 4.1 106 44-158 101-216 (451)
141 TIGR03815 CpaE_hom_Actino heli 77.5 3.9 8.4E-05 37.7 4.8 61 14-74 53-127 (322)
142 COG1618 Predicted nucleotide k 77.3 3.3 7.2E-05 34.1 3.7 30 43-72 5-36 (179)
143 cd02034 CooC The accessory pro 76.8 3.2 7E-05 32.1 3.4 27 50-76 8-34 (116)
144 PF02606 LpxK: Tetraacyldisacc 76.5 3.9 8.4E-05 37.8 4.5 34 41-74 33-70 (326)
145 PRK00889 adenylylsulfate kinas 76.4 4.7 0.0001 33.3 4.6 32 41-72 2-35 (175)
146 KOG3347 Predicted nucleotide k 76.2 2.6 5.6E-05 34.2 2.7 25 42-66 6-32 (176)
147 PRK12723 flagellar biosynthesi 76.1 2.3 5E-05 40.3 2.9 33 44-76 175-213 (388)
148 TIGR00379 cobB cobyrinic acid 76.0 3.3 7.2E-05 40.1 4.1 26 49-74 7-33 (449)
149 PF13614 AAA_31: AAA domain; P 75.9 4.4 9.4E-05 32.6 4.2 31 44-74 1-34 (157)
150 PF02374 ArsA_ATPase: Anion-tr 75.7 4.6 0.0001 37.0 4.7 34 44-77 2-37 (305)
151 COG0237 CoaE Dephospho-CoA kin 75.7 2.8 6E-05 35.9 3.0 30 43-76 2-33 (201)
152 PF01583 APS_kinase: Adenylyls 75.4 5.7 0.00012 32.5 4.7 31 43-73 2-34 (156)
153 TIGR01425 SRP54_euk signal rec 75.3 5.2 0.00011 38.4 5.1 34 43-76 100-135 (429)
154 PRK09841 cryptic autophosphory 75.3 5.5 0.00012 41.1 5.6 35 41-75 529-566 (726)
155 COG3954 PrkB Phosphoribulokina 75.1 1.8 4E-05 36.5 1.7 32 41-72 3-36 (289)
156 PF13207 AAA_17: AAA domain; P 74.9 3.3 7.2E-05 31.7 3.1 21 45-65 1-23 (121)
157 COG1663 LpxK Tetraacyldisaccha 74.4 4.3 9.3E-05 37.4 4.0 33 42-74 46-82 (336)
158 PRK14491 putative bifunctional 73.0 5 0.00011 40.4 4.5 36 42-77 9-46 (597)
159 PLN02796 D-glycerate 3-kinase 72.7 5.5 0.00012 37.1 4.4 32 42-73 99-132 (347)
160 cd02023 UMPK Uridine monophosp 72.6 4.6 9.9E-05 34.1 3.7 21 45-65 1-23 (198)
161 TIGR00750 lao LAO/AO transport 72.1 6.6 0.00014 35.8 4.8 36 41-76 32-69 (300)
162 PF07755 DUF1611: Protein of u 71.9 5.8 0.00012 36.1 4.3 109 42-151 111-252 (301)
163 PTZ00451 dephospho-CoA kinase; 71.7 4.1 8.8E-05 36.0 3.2 21 44-64 2-24 (244)
164 TIGR00041 DTMP_kinase thymidyl 71.3 6.4 0.00014 33.0 4.3 31 43-73 3-35 (195)
165 cd01672 TMPK Thymidine monopho 70.8 6.9 0.00015 32.6 4.4 31 45-75 2-34 (200)
166 TIGR00313 cobQ cobyric acid sy 70.6 4.3 9.3E-05 39.7 3.4 28 47-74 2-32 (475)
167 PRK05480 uridine/cytidine kina 70.3 5.9 0.00013 33.8 3.9 25 41-65 4-30 (209)
168 PF01121 CoaE: Dephospho-CoA k 70.1 4.1 8.8E-05 34.2 2.7 24 45-72 2-27 (180)
169 PRK08233 hypothetical protein; 69.1 4.7 0.0001 33.2 3.0 24 43-66 3-28 (182)
170 TIGR00235 udk uridine kinase. 68.7 5.8 0.00013 33.9 3.5 27 41-67 4-32 (207)
171 PTZ00301 uridine kinase; Provi 68.7 6.6 0.00014 33.8 3.8 26 42-67 2-29 (210)
172 PRK00771 signal recognition pa 68.3 8.8 0.00019 37.0 4.9 34 43-76 95-130 (437)
173 COG1855 ATPase (PilT family) [ 68.3 5.3 0.00012 38.3 3.3 77 41-128 261-339 (604)
174 PRK11889 flhF flagellar biosyn 68.2 9 0.0002 36.5 4.8 34 43-76 241-276 (436)
175 cd03111 CpaE_like This protein 67.9 6.8 0.00015 29.5 3.4 45 49-109 8-53 (106)
176 PF01558 POR: Pyruvate ferredo 67.7 67 0.0015 26.3 9.8 150 52-252 3-153 (173)
177 TIGR03499 FlhF flagellar biosy 67.5 9 0.0002 34.6 4.6 34 42-75 193-230 (282)
178 PF01935 DUF87: Domain of unkn 67.4 6.7 0.00015 33.9 3.7 45 25-73 11-56 (229)
179 KOG1324 Dihydrofolate reductas 67.3 5.9 0.00013 32.9 3.0 14 250-263 61-74 (190)
180 cd02026 PRK Phosphoribulokinas 67.2 5.1 0.00011 36.0 2.9 26 45-70 1-28 (273)
181 PRK13768 GTPase; Provisional 67.1 8.9 0.00019 34.0 4.4 30 45-74 4-35 (253)
182 PRK11519 tyrosine kinase; Prov 66.3 12 0.00025 38.7 5.7 35 41-75 524-561 (719)
183 TIGR00959 ffh signal recogniti 66.2 5.4 0.00012 38.4 3.0 33 43-75 99-134 (428)
184 cd02024 NRK1 Nicotinamide ribo 66.2 4.8 0.0001 34.0 2.4 21 45-65 1-23 (187)
185 cd02019 NK Nucleoside/nucleoti 66.1 10 0.00023 26.0 3.8 21 45-65 1-23 (69)
186 PLN03046 D-glycerate 3-kinase; 65.6 9.1 0.0002 36.7 4.3 34 42-75 211-246 (460)
187 TIGR02880 cbbX_cfxQ probable R 65.2 5.9 0.00013 35.8 3.0 26 45-71 63-88 (284)
188 COG3172 NadR Predicted ATPase/ 64.8 6.5 0.00014 32.4 2.8 26 42-67 7-34 (187)
189 KOG3354 Gluconate kinase [Carb 64.8 5.4 0.00012 32.6 2.3 21 45-66 17-37 (191)
190 TIGR00347 bioD dethiobiotin sy 64.8 7.8 0.00017 31.6 3.4 26 50-75 7-32 (166)
191 PRK07933 thymidylate kinase; V 64.6 11 0.00024 32.5 4.4 30 45-74 2-33 (213)
192 COG0529 CysC Adenylylsulfate k 64.3 21 0.00045 30.0 5.6 33 41-73 21-55 (197)
193 KOG3308 Uncharacterized protei 63.8 6.4 0.00014 33.6 2.6 27 42-68 3-31 (225)
194 cd03115 SRP The signal recogni 63.7 13 0.00028 30.5 4.6 32 45-76 2-35 (173)
195 PF06418 CTP_synth_N: CTP synt 63.2 9.8 0.00021 33.9 3.8 31 44-74 2-36 (276)
196 PRK00698 tmk thymidylate kinas 62.8 14 0.0003 31.1 4.7 30 43-72 3-34 (205)
197 PRK10867 signal recognition pa 62.6 12 0.00027 36.0 4.7 34 43-76 100-136 (433)
198 PF00142 Fer4_NifH: 4Fe-4S iro 62.5 8.6 0.00019 34.3 3.3 28 50-77 9-36 (273)
199 TIGR01005 eps_transp_fam exopo 62.5 14 0.00029 38.5 5.4 35 41-75 544-581 (754)
200 PRK04040 adenylate kinase; Pro 62.2 9.9 0.00021 32.1 3.6 29 44-73 3-33 (188)
201 PRK07429 phosphoribulokinase; 61.5 9.1 0.0002 35.4 3.5 29 41-69 6-36 (327)
202 PF13521 AAA_28: AAA domain; P 61.4 5.9 0.00013 32.3 2.1 19 46-64 2-22 (163)
203 PRK06547 hypothetical protein; 61.0 15 0.00032 30.5 4.4 25 41-65 13-39 (172)
204 cd00550 ArsA_ATPase Oxyanion-t 60.8 13 0.00028 32.9 4.3 27 50-76 9-35 (254)
205 COG3265 GntK Gluconate kinase 60.5 5.2 0.00011 32.4 1.5 21 47-68 2-22 (161)
206 COG1428 Deoxynucleoside kinase 60.4 9.8 0.00021 32.7 3.2 25 42-66 3-29 (216)
207 PRK12726 flagellar biosynthesi 60.2 16 0.00035 34.6 4.9 35 42-76 205-241 (407)
208 COG4088 Predicted nucleotide k 60.0 12 0.00026 32.3 3.6 30 43-72 1-32 (261)
209 cd00477 FTHFS Formyltetrahydro 60.0 14 0.00031 36.0 4.5 32 42-73 37-74 (524)
210 COG0455 flhG Antiactivator of 60.0 14 0.00031 33.0 4.4 31 43-73 2-36 (262)
211 PRK06995 flhF flagellar biosyn 59.8 15 0.00032 36.0 4.7 33 42-74 255-291 (484)
212 PRK13886 conjugal transfer pro 58.8 11 0.00024 33.2 3.4 27 49-75 11-37 (241)
213 COG0504 PyrG CTP synthase (UTP 58.5 14 0.0003 35.8 4.2 31 44-74 2-36 (533)
214 COG0003 ArsA Predicted ATPase 58.1 16 0.00035 33.7 4.5 100 44-144 3-113 (322)
215 PF13238 AAA_18: AAA domain; P 58.0 10 0.00022 28.9 2.8 20 46-65 1-22 (129)
216 PRK14734 coaE dephospho-CoA ki 57.7 11 0.00024 32.1 3.2 25 44-72 2-28 (200)
217 cd02022 DPCK Dephospho-coenzym 57.4 13 0.00028 30.9 3.5 26 45-74 1-28 (179)
218 PLN02924 thymidylate kinase 57.0 18 0.00039 31.4 4.4 32 42-73 15-48 (220)
219 PRK14490 putative bifunctional 56.9 16 0.00034 34.4 4.3 33 42-75 4-38 (369)
220 KOG0635 Adenosine 5'-phosphosu 56.8 20 0.00043 29.3 4.2 33 40-72 28-62 (207)
221 cd02038 FleN-like FleN is a me 56.6 14 0.00031 29.2 3.5 50 46-109 5-55 (139)
222 PLN02348 phosphoribulokinase 56.6 15 0.00032 34.9 4.0 29 41-69 47-77 (395)
223 PRK13896 cobyrinic acid a,c-di 56.6 14 0.00031 35.6 4.0 29 45-73 3-34 (433)
224 TIGR00152 dephospho-CoA kinase 56.5 9.3 0.0002 32.0 2.5 21 45-65 1-23 (188)
225 COG0125 Tmk Thymidylate kinase 56.5 12 0.00025 32.3 3.1 32 43-74 3-36 (208)
226 cd03113 CTGs CTP synthetase (C 55.9 19 0.00041 31.8 4.2 31 44-74 1-35 (255)
227 PLN02974 adenosylmethionine-8- 55.9 16 0.00034 38.3 4.4 33 41-73 25-60 (817)
228 PLN02422 dephospho-CoA kinase 55.8 12 0.00027 32.7 3.2 26 44-73 2-29 (232)
229 PF08433 KTI12: Chromatin asso 55.7 16 0.00035 32.8 4.0 34 43-76 1-36 (270)
230 PRK14731 coaE dephospho-CoA ki 54.9 14 0.0003 31.6 3.4 27 42-72 4-32 (208)
231 PF05872 DUF853: Bacterial pro 54.5 9.7 0.00021 36.7 2.4 37 37-74 16-52 (502)
232 PRK13505 formate--tetrahydrofo 54.2 21 0.00046 35.3 4.7 32 42-73 54-91 (557)
233 cd01130 VirB11-like_ATPase Typ 54.2 16 0.00035 30.5 3.6 33 34-67 17-51 (186)
234 COG1102 Cmk Cytidylate kinase 53.8 16 0.00034 30.2 3.2 30 45-77 2-33 (179)
235 COG1348 NifH Nitrogenase subun 53.8 13 0.00027 32.7 2.8 33 45-77 3-37 (278)
236 PRK14732 coaE dephospho-CoA ki 53.6 11 0.00024 32.0 2.5 19 45-63 1-21 (196)
237 PRK05632 phosphate acetyltrans 53.1 18 0.00038 37.2 4.3 31 45-75 4-37 (684)
238 PF01268 FTHFS: Formate--tetra 52.9 19 0.00041 35.6 4.1 33 41-73 52-90 (557)
239 PF00580 UvrD-helicase: UvrD/R 52.9 14 0.00031 33.1 3.3 30 41-71 14-44 (315)
240 cd03114 ArgK-like The function 52.4 16 0.00034 29.5 3.1 29 46-74 2-32 (148)
241 cd02027 APSK Adenosine 5'-phos 52.3 22 0.00048 28.5 4.0 27 46-72 2-30 (149)
242 TIGR01360 aden_kin_iso1 adenyl 52.2 22 0.00047 29.4 4.1 29 42-73 2-32 (188)
243 PRK06761 hypothetical protein; 51.8 14 0.0003 33.4 2.9 29 44-72 4-34 (282)
244 PRK13506 formate--tetrahydrofo 51.7 20 0.00043 35.5 4.1 31 42-72 53-89 (578)
245 KOG2749 mRNA cleavage and poly 51.4 21 0.00046 33.2 4.0 31 42-72 103-134 (415)
246 PRK00081 coaE dephospho-CoA ki 51.4 16 0.00035 30.9 3.1 25 44-72 3-29 (194)
247 PRK14733 coaE dephospho-CoA ki 51.0 16 0.00034 31.4 3.0 27 43-72 6-34 (204)
248 PRK05541 adenylylsulfate kinas 50.8 32 0.00068 28.3 4.8 31 42-72 6-38 (176)
249 PRK05703 flhF flagellar biosyn 50.7 24 0.00053 33.9 4.6 34 43-76 221-258 (424)
250 cd02035 ArsA ArsA ATPase funct 50.5 17 0.00038 31.2 3.3 27 50-76 8-34 (217)
251 PRK05380 pyrG CTP synthetase; 50.3 23 0.00049 35.0 4.3 32 43-74 2-37 (533)
252 PRK14730 coaE dephospho-CoA ki 50.1 18 0.0004 30.6 3.3 26 44-72 2-29 (195)
253 PRK13695 putative NTPase; Prov 50.1 22 0.00049 29.2 3.8 28 45-72 2-31 (174)
254 PRK13507 formate--tetrahydrofo 49.9 19 0.00042 35.5 3.7 32 42-73 62-99 (587)
255 PRK00300 gmk guanylate kinase; 49.8 17 0.00037 30.7 3.1 26 41-66 3-30 (205)
256 PF02223 Thymidylate_kin: Thym 49.6 14 0.0003 30.7 2.5 21 52-72 7-27 (186)
257 COG4555 NatA ABC-type Na+ tran 49.5 16 0.00035 31.4 2.7 27 41-67 26-54 (245)
258 PRK13973 thymidylate kinase; P 49.2 17 0.00037 31.1 3.1 32 44-75 4-37 (213)
259 TIGR02322 phosphon_PhnN phosph 47.9 19 0.00041 29.7 3.0 24 44-67 2-27 (179)
260 PRK14722 flhF flagellar biosyn 47.9 29 0.00062 32.8 4.5 34 42-75 136-173 (374)
261 PRK06278 cobyrinic acid a,c-di 47.6 22 0.00048 34.7 3.8 28 41-68 236-266 (476)
262 PRK01184 hypothetical protein; 47.1 27 0.00059 28.9 3.9 26 44-73 2-29 (184)
263 PRK03333 coaE dephospho-CoA ki 46.3 19 0.00042 34.2 3.2 20 44-63 2-23 (395)
264 TIGR00337 PyrG CTP synthase. C 46.0 29 0.00063 34.2 4.3 31 44-74 2-36 (525)
265 TIGR01470 cysG_Nterm siroheme 45.8 12 0.00026 32.1 1.5 64 3-67 71-142 (205)
266 TIGR01033 DNA-binding regulato 45.5 61 0.0013 28.5 5.9 55 233-289 54-115 (238)
267 cd03243 ABC_MutS_homologs The 45.5 24 0.00051 29.9 3.3 23 42-64 28-52 (202)
268 PRK08118 topology modulation p 45.5 26 0.00056 28.8 3.4 22 45-66 3-26 (167)
269 PRK06762 hypothetical protein; 45.3 26 0.00056 28.4 3.4 22 44-65 3-26 (166)
270 PF12846 AAA_10: AAA-like doma 44.9 22 0.00048 31.6 3.2 30 43-73 4-33 (304)
271 cd03283 ABC_MutS-like MutS-lik 44.8 31 0.00067 29.3 3.9 28 43-70 25-56 (199)
272 PLN02327 CTP synthase 44.7 31 0.00066 34.3 4.2 31 44-74 2-36 (557)
273 COG4133 CcmA ABC-type transpor 44.7 22 0.00049 30.1 2.9 32 41-72 26-59 (209)
274 PLN02759 Formate--tetrahydrofo 44.7 31 0.00066 34.5 4.2 32 42-73 68-106 (637)
275 COG4586 ABC-type uncharacteriz 44.6 28 0.00061 31.4 3.6 64 13-76 17-85 (325)
276 PRK14723 flhF flagellar biosyn 44.6 33 0.00072 35.6 4.6 33 43-75 185-221 (767)
277 PF13604 AAA_30: AAA domain; P 44.5 35 0.00076 28.9 4.2 32 43-74 18-51 (196)
278 cd03281 ABC_MSH5_euk MutS5 hom 43.7 34 0.00074 29.4 4.0 29 44-72 30-62 (213)
279 PRK06217 hypothetical protein; 43.6 25 0.00054 29.2 3.1 21 45-65 3-25 (183)
280 PF00005 ABC_tran: ABC transpo 43.1 20 0.00043 27.9 2.4 25 42-66 10-36 (137)
281 PRK00131 aroK shikimate kinase 43.0 32 0.00068 27.8 3.6 24 42-65 3-28 (175)
282 cd03229 ABC_Class3 This class 42.1 21 0.00046 29.5 2.5 27 41-67 24-52 (178)
283 PRK13889 conjugal transfer rel 42.1 27 0.00058 37.4 3.7 29 45-73 364-394 (988)
284 COG5271 MDN1 AAA ATPase contai 42.0 27 0.00059 39.7 3.6 52 29-82 454-522 (4600)
285 cd03255 ABC_MJ0796_Lo1CDE_FtsE 41.8 23 0.00049 30.3 2.7 26 41-66 28-55 (218)
286 TIGR00150 HI0065_YjeE ATPase, 41.7 48 0.001 26.3 4.2 30 36-66 16-47 (133)
287 COG1131 CcmA ABC-type multidru 41.5 21 0.00045 32.5 2.4 28 41-68 29-58 (293)
288 PF13476 AAA_23: AAA domain; P 41.3 29 0.00063 28.7 3.2 27 42-68 18-46 (202)
289 PLN02318 phosphoribulokinase/u 41.3 29 0.00064 34.9 3.6 26 41-66 63-90 (656)
290 PRK04296 thymidine kinase; Pro 40.4 43 0.00092 28.1 4.1 32 44-75 3-36 (190)
291 cd03223 ABCD_peroxisomal_ALDP 39.9 33 0.00071 28.0 3.2 26 41-66 25-52 (166)
292 PF02562 PhoH: PhoH-like prote 39.8 36 0.00078 29.2 3.5 57 267-323 120-177 (205)
293 cd02020 CMPK Cytidine monophos 39.6 29 0.00062 27.2 2.8 21 45-65 1-23 (147)
294 PRK07261 topology modulation p 39.6 33 0.00072 28.3 3.2 20 46-65 3-24 (171)
295 cd01131 PilT Pilus retraction 39.6 41 0.0009 28.4 3.9 22 45-66 3-26 (198)
296 PRK06851 hypothetical protein; 39.5 50 0.0011 31.1 4.7 31 42-72 29-61 (367)
297 PRK13537 nodulation ABC transp 39.5 22 0.00047 32.5 2.3 27 41-67 31-59 (306)
298 PRK10463 hydrogenase nickel in 38.6 78 0.0017 28.7 5.6 41 41-81 102-144 (290)
299 cd03280 ABC_MutS2 MutS2 homolo 38.6 46 0.001 28.1 4.0 27 44-70 29-59 (200)
300 cd03226 ABC_cobalt_CbiO_domain 38.1 26 0.00057 29.6 2.5 26 41-66 24-51 (205)
301 PF02492 cobW: CobW/HypB/UreG, 37.6 49 0.0011 27.3 4.0 31 44-75 1-33 (178)
302 PRK13947 shikimate kinase; Pro 37.6 39 0.00084 27.4 3.4 21 45-65 3-25 (171)
303 cd03294 ABC_Pro_Gly_Bertaine T 37.5 26 0.00056 31.2 2.4 26 41-66 48-75 (269)
304 PF07931 CPT: Chloramphenicol 37.5 21 0.00045 29.8 1.7 23 44-66 2-26 (174)
305 cd03259 ABC_Carb_Solutes_like 37.4 28 0.00062 29.6 2.6 26 41-66 24-51 (213)
306 PF00391 PEP-utilizers: PEP-ut 37.3 65 0.0014 22.8 4.1 39 13-53 42-80 (80)
307 PF13555 AAA_29: P-loop contai 37.3 55 0.0012 22.2 3.4 26 44-69 24-51 (62)
308 PRK13826 Dtr system oriT relax 37.3 36 0.00078 36.9 3.7 31 43-73 397-429 (1102)
309 TIGR02782 TrbB_P P-type conjug 37.1 76 0.0016 28.9 5.4 34 33-67 123-158 (299)
310 COG2019 AdkA Archaeal adenylat 37.1 35 0.00076 28.4 2.8 23 43-65 4-28 (189)
311 PRK14528 adenylate kinase; Pro 36.8 57 0.0012 27.2 4.3 22 44-65 2-25 (186)
312 TIGR01313 therm_gnt_kin carboh 36.6 27 0.00058 28.3 2.2 19 47-65 2-22 (163)
313 PTZ00386 formyl tetrahydrofola 36.6 38 0.00082 33.8 3.4 32 42-73 67-105 (625)
314 PRK13975 thymidylate kinase; P 36.3 38 0.00082 28.3 3.1 24 44-67 3-28 (196)
315 TIGR01166 cbiO cobalt transpor 36.1 30 0.00064 28.9 2.4 26 41-66 16-43 (190)
316 COG0856 Orotate phosphoribosyl 36.0 82 0.0018 26.3 4.7 25 266-291 141-165 (203)
317 PRK12724 flagellar biosynthesi 35.7 60 0.0013 31.2 4.6 34 43-76 223-259 (432)
318 cd03222 ABC_RNaseL_inhibitor T 35.5 34 0.00074 28.5 2.7 27 41-67 23-51 (177)
319 KOG3220 Similar to bacterial d 35.5 38 0.00083 29.0 2.9 25 44-72 2-28 (225)
320 TIGR01613 primase_Cterm phage/ 35.5 26 0.00056 31.9 2.1 21 49-69 84-104 (304)
321 PF08303 tRNA_lig_kinase: tRNA 35.4 23 0.00051 29.2 1.6 21 46-67 5-25 (168)
322 PRK13540 cytochrome c biogenes 35.3 33 0.00072 28.9 2.6 26 41-66 25-52 (200)
323 cd01129 PulE-GspE PulE/GspE Th 35.2 63 0.0014 28.8 4.5 31 34-64 71-104 (264)
324 PF04693 DDE_Tnp_2: Archaeal p 35.2 36 0.00078 31.0 2.8 46 235-281 50-98 (327)
325 COG2759 MIS1 Formyltetrahydrof 35.0 36 0.00077 32.8 2.9 32 42-73 51-88 (554)
326 PRK12378 hypothetical protein; 34.9 1.6E+02 0.0035 25.8 6.8 65 225-289 44-112 (235)
327 KOG1532 GTPase XAB1, interacts 34.9 43 0.00094 30.2 3.2 27 45-72 24-50 (366)
328 PF08353 DUF1727: Domain of un 34.6 54 0.0012 25.2 3.4 43 277-319 2-51 (113)
329 KOG3062 RNA polymerase II elon 34.5 54 0.0012 28.7 3.7 29 43-71 1-31 (281)
330 PRK08099 bifunctional DNA-bind 34.5 41 0.0009 32.1 3.4 25 41-65 217-243 (399)
331 PRK14721 flhF flagellar biosyn 34.4 63 0.0014 31.1 4.5 24 42-65 190-215 (420)
332 PRK00110 hypothetical protein; 34.3 1.2E+02 0.0025 26.9 5.9 55 233-289 54-115 (245)
333 PRK15177 Vi polysaccharide exp 33.9 30 0.00064 29.7 2.1 26 41-66 11-38 (213)
334 PF01709 Transcrip_reg: Transc 33.8 77 0.0017 27.8 4.7 55 233-289 50-111 (234)
335 PRK11248 tauB taurine transpor 33.8 35 0.00075 30.2 2.6 26 41-66 25-52 (255)
336 PRK10744 pstB phosphate transp 33.7 36 0.00078 30.0 2.7 26 41-66 37-64 (260)
337 PRK09825 idnK D-gluconate kina 33.4 46 0.00099 27.6 3.1 23 44-66 4-28 (176)
338 PRK06731 flhF flagellar biosyn 33.4 74 0.0016 28.6 4.6 36 42-77 74-111 (270)
339 TIGR01420 pilT_fam pilus retra 33.3 49 0.0011 30.8 3.6 32 35-66 114-147 (343)
340 cd03278 ABC_SMC_barmotin Barmo 33.3 44 0.00096 28.2 3.1 23 45-67 24-48 (197)
341 cd03263 ABC_subfamily_A The AB 33.2 37 0.00079 29.0 2.6 26 41-66 26-53 (220)
342 COG1341 Predicted GTPase or GT 33.2 39 0.00084 32.0 2.8 33 42-74 72-106 (398)
343 PRK10247 putative ABC transpor 33.0 45 0.00098 28.7 3.2 26 41-66 31-58 (225)
344 cd03256 ABC_PhnC_transporter A 32.9 39 0.00085 29.3 2.8 26 41-66 25-52 (241)
345 smart00053 DYNc Dynamin, GTPas 32.7 37 0.00081 29.9 2.6 23 42-64 25-49 (240)
346 PRK13477 bifunctional pantoate 32.5 56 0.0012 32.3 4.0 24 42-65 283-308 (512)
347 cd01120 RecA-like_NTPases RecA 32.3 60 0.0013 25.5 3.6 31 46-76 2-34 (165)
348 COG1245 Predicted ATPase, RNas 32.1 46 0.00099 32.4 3.1 27 40-66 97-125 (591)
349 cd03293 ABC_NrtD_SsuB_transpor 32.0 34 0.00073 29.3 2.2 26 41-66 28-55 (220)
350 PRK08154 anaerobic benzoate ca 32.0 34 0.00073 31.3 2.3 25 41-65 131-157 (309)
351 PRK09493 glnQ glutamine ABC tr 31.9 37 0.00081 29.5 2.5 26 41-66 25-52 (240)
352 PRK13652 cbiO cobalt transport 31.9 37 0.0008 30.4 2.5 26 41-66 28-55 (277)
353 PRK10584 putative ABC transpor 31.9 40 0.00088 28.9 2.7 26 41-66 34-61 (228)
354 TIGR03608 L_ocin_972_ABC putat 31.8 39 0.00085 28.4 2.5 26 41-66 22-49 (206)
355 cd03231 ABC_CcmA_heme_exporter 31.5 39 0.00084 28.5 2.4 26 41-66 24-51 (201)
356 cd03274 ABC_SMC4_euk Eukaryoti 31.5 53 0.0012 28.1 3.3 21 44-64 26-48 (212)
357 cd03260 ABC_PstB_phosphate_tra 31.4 57 0.0012 28.0 3.5 25 41-65 24-50 (227)
358 cd03300 ABC_PotA_N PotA is an 31.3 41 0.0009 29.1 2.6 27 41-67 24-52 (232)
359 PRK13538 cytochrome c biogenes 31.2 41 0.00088 28.4 2.5 26 41-66 25-52 (204)
360 TIGR02768 TraA_Ti Ti-type conj 31.1 52 0.0011 34.2 3.7 29 45-74 373-401 (744)
361 cd03225 ABC_cobalt_CbiO_domain 31.0 45 0.00098 28.2 2.8 26 41-66 25-52 (211)
362 cd03232 ABC_PDR_domain2 The pl 30.8 51 0.0011 27.6 3.0 24 41-64 31-56 (192)
363 TIGR02673 FtsE cell division A 30.7 41 0.0009 28.5 2.5 26 41-66 26-53 (214)
364 TIGR00017 cmk cytidylate kinas 30.7 57 0.0012 28.1 3.4 23 44-66 3-27 (217)
365 TIGR01184 ntrCD nitrate transp 30.7 41 0.0009 29.1 2.5 25 42-66 10-36 (230)
366 PRK08537 2-oxoglutarate ferred 30.7 3E+02 0.0066 22.6 11.0 32 219-252 126-158 (177)
367 cd03265 ABC_DrrA DrrA is the A 30.6 41 0.00089 28.7 2.5 26 41-66 24-51 (220)
368 PRK13946 shikimate kinase; Pro 30.6 56 0.0012 27.1 3.3 22 44-65 11-34 (184)
369 KOG0460 Mitochondrial translat 30.6 35 0.00076 31.7 2.1 20 52-71 65-84 (449)
370 cd00227 CPT Chloramphenicol (C 30.6 64 0.0014 26.5 3.6 23 44-66 3-27 (175)
371 cd03253 ABCC_ATM1_transporter 30.5 50 0.0011 28.5 3.0 26 41-66 25-52 (236)
372 PRK10908 cell division protein 30.4 55 0.0012 28.0 3.2 26 41-66 26-53 (222)
373 PRK00023 cmk cytidylate kinase 30.4 62 0.0014 28.0 3.6 24 43-66 4-29 (225)
374 PRK13650 cbiO cobalt transport 30.3 43 0.00093 30.0 2.6 26 41-66 31-58 (279)
375 PRK14709 hypothetical protein; 30.2 36 0.00078 33.2 2.2 20 49-68 213-232 (469)
376 cd00267 ABC_ATPase ABC (ATP-bi 30.2 45 0.00098 26.7 2.5 26 42-67 24-51 (157)
377 PRK04182 cytidylate kinase; Pr 30.1 52 0.0011 26.8 2.9 21 45-65 2-24 (180)
378 cd03273 ABC_SMC2_euk Eukaryoti 30.0 62 0.0013 28.4 3.6 26 42-67 24-51 (251)
379 PRK14235 phosphate transporter 30.0 51 0.0011 29.3 3.1 26 41-66 43-70 (267)
380 TIGR02770 nickel_nikD nickel i 30.0 44 0.00095 28.9 2.6 26 41-66 10-37 (230)
381 cd03221 ABCF_EF-3 ABCF_EF-3 E 29.7 57 0.0012 25.9 3.0 26 41-66 24-51 (144)
382 PRK13539 cytochrome c biogenes 29.7 46 0.00099 28.2 2.6 26 41-66 26-53 (207)
383 TIGR00960 3a0501s02 Type II (G 29.6 43 0.00094 28.5 2.4 26 41-66 27-54 (216)
384 TIGR02315 ABC_phnC phosphonate 29.6 47 0.001 28.8 2.7 26 41-66 26-53 (243)
385 cd03269 ABC_putative_ATPase Th 29.5 42 0.00091 28.4 2.3 26 41-66 24-51 (210)
386 PRK06851 hypothetical protein; 29.4 94 0.002 29.3 4.7 31 43-73 214-246 (367)
387 TIGR02211 LolD_lipo_ex lipopro 29.3 46 0.00099 28.4 2.5 26 41-66 29-56 (221)
388 cd03258 ABC_MetN_methionine_tr 29.2 50 0.0011 28.5 2.8 26 41-66 29-56 (233)
389 cd03369 ABCC_NFT1 Domain 2 of 29.1 60 0.0013 27.4 3.2 26 41-66 32-59 (207)
390 PRK11629 lolD lipoprotein tran 29.1 43 0.00093 29.0 2.3 26 41-66 33-60 (233)
391 cd03272 ABC_SMC3_euk Eukaryoti 29.0 56 0.0012 28.3 3.1 24 43-66 23-48 (243)
392 cd03295 ABC_OpuCA_Osmoprotecti 29.0 50 0.0011 28.7 2.8 26 41-66 25-52 (242)
393 cd04236 AAK_NAGS-Urea AAK_NAGS 28.8 1E+02 0.0022 27.7 4.7 65 234-303 8-78 (271)
394 TIGR03864 PQQ_ABC_ATP ABC tran 28.8 46 0.00099 28.8 2.5 26 41-66 25-52 (236)
395 cd03247 ABCC_cytochrome_bd The 28.8 56 0.0012 26.9 2.9 26 41-66 26-53 (178)
396 cd03252 ABCC_Hemolysin The ABC 28.7 55 0.0012 28.3 3.0 27 41-67 26-54 (237)
397 COG0466 Lon ATP-dependent Lon 28.7 61 0.0013 33.2 3.5 64 11-77 321-386 (782)
398 COG3910 Predicted ATPase [Gene 28.6 44 0.00096 28.5 2.2 49 13-64 10-60 (233)
399 cd03240 ABC_Rad50 The catalyti 28.6 64 0.0014 27.4 3.3 23 44-66 23-47 (204)
400 PRK11153 metN DL-methionine tr 28.6 40 0.00087 31.3 2.2 27 41-67 29-57 (343)
401 cd03237 ABC_RNaseL_inhibitor_d 28.5 51 0.0011 29.0 2.7 25 42-66 24-50 (246)
402 cd03250 ABCC_MRP_domain1 Domai 28.5 56 0.0012 27.5 2.9 26 41-66 29-56 (204)
403 cd02021 GntK Gluconate kinase 28.5 47 0.001 26.3 2.4 19 47-65 3-23 (150)
404 cd03214 ABC_Iron-Siderophores_ 28.4 52 0.0011 27.2 2.7 27 41-67 23-51 (180)
405 PRK13976 thymidylate kinase; P 28.4 58 0.0013 27.9 3.0 21 52-72 11-33 (209)
406 PF03266 NTPase_1: NTPase; In 28.4 80 0.0017 26.0 3.7 27 46-72 2-30 (168)
407 TIGR01288 nodI ATP-binding ABC 28.4 44 0.00095 30.4 2.4 26 41-66 28-55 (303)
408 TIGR03771 anch_rpt_ABC anchore 28.3 51 0.0011 28.3 2.7 25 42-66 5-31 (223)
409 cd03228 ABCC_MRP_Like The MRP 28.3 58 0.0013 26.6 2.9 27 41-67 26-54 (171)
410 cd03213 ABCG_EPDR ABCG transpo 28.3 47 0.001 27.9 2.4 25 41-65 33-59 (194)
411 cd03262 ABC_HisP_GlnQ_permease 28.3 52 0.0011 27.9 2.7 26 41-66 24-51 (213)
412 cd03292 ABC_FtsE_transporter F 28.2 45 0.00098 28.2 2.3 26 41-66 25-52 (214)
413 cd03238 ABC_UvrA The excision 28.1 64 0.0014 26.8 3.1 21 41-61 19-41 (176)
414 PRK14250 phosphate ABC transpo 28.1 49 0.0011 28.8 2.5 26 41-66 27-54 (241)
415 PRK14238 phosphate transporter 28.0 57 0.0012 29.0 3.0 26 41-66 48-75 (271)
416 cd03216 ABC_Carb_Monos_I This 28.0 47 0.001 27.0 2.3 27 41-67 24-52 (163)
417 PRK11264 putative amino-acid A 27.9 50 0.0011 28.8 2.6 26 41-66 27-54 (250)
418 PRK04220 2-phosphoglycerate ki 27.8 1.1E+02 0.0023 28.1 4.7 23 43-65 92-116 (301)
419 PF01202 SKI: Shikimate kinase 27.8 42 0.00092 27.1 2.0 16 52-67 3-18 (158)
420 TIGR02173 cyt_kin_arch cytidyl 27.8 62 0.0013 26.1 3.0 21 45-65 2-24 (171)
421 TIGR03574 selen_PSTK L-seryl-t 27.8 67 0.0014 28.1 3.4 23 51-73 9-31 (249)
422 PRK09518 bifunctional cytidyla 27.8 60 0.0013 33.5 3.5 23 44-66 2-26 (712)
423 PF00004 AAA: ATPase family as 27.7 59 0.0013 24.6 2.7 20 47-66 2-23 (132)
424 PHA02575 1 deoxynucleoside mon 27.6 61 0.0013 28.3 2.9 24 45-72 2-27 (227)
425 PRK14530 adenylate kinase; Pro 27.6 69 0.0015 27.3 3.3 22 44-65 4-27 (215)
426 TIGR03263 guanyl_kin guanylate 27.5 61 0.0013 26.5 2.9 22 44-65 2-25 (180)
427 cd03266 ABC_NatA_sodium_export 27.5 56 0.0012 27.8 2.8 26 41-66 29-56 (218)
428 PRK13541 cytochrome c biogenes 27.4 56 0.0012 27.3 2.7 26 41-66 24-51 (195)
429 cd03301 ABC_MalK_N The N-termi 27.4 50 0.0011 28.0 2.4 26 41-66 24-51 (213)
430 cd03218 ABC_YhbG The ABC trans 27.1 53 0.0012 28.2 2.6 26 41-66 24-51 (232)
431 PRK14251 phosphate ABC transpo 27.1 54 0.0012 28.7 2.7 26 41-66 28-55 (251)
432 TIGR02769 nickel_nikE nickel i 27.1 50 0.0011 29.3 2.5 26 41-66 35-62 (265)
433 cd03244 ABCC_MRP_domain2 Domai 27.1 62 0.0013 27.6 3.0 26 41-66 28-55 (221)
434 TIGR01188 drrA daunorubicin re 27.1 47 0.001 30.1 2.3 27 41-67 17-45 (302)
435 cd03261 ABC_Org_Solvent_Resist 27.1 48 0.001 28.6 2.3 26 41-66 24-51 (235)
436 cd03249 ABC_MTABC3_MDL1_MDL2 M 26.9 59 0.0013 28.1 2.9 26 41-66 27-54 (238)
437 cd03282 ABC_MSH4_euk MutS4 hom 26.9 85 0.0018 26.8 3.7 29 42-70 28-60 (204)
438 PF03029 ATP_bind_1: Conserved 26.8 56 0.0012 28.7 2.6 23 52-74 7-29 (238)
439 cd03251 ABCC_MsbA MsbA is an e 26.8 64 0.0014 27.8 3.1 26 41-66 26-53 (234)
440 cd03235 ABC_Metallic_Cations A 26.8 49 0.0011 28.1 2.3 26 41-66 23-50 (213)
441 COG1149 MinD superfamily P-loo 26.5 92 0.002 28.0 3.9 25 45-69 3-30 (284)
442 PRK14274 phosphate ABC transpo 26.4 74 0.0016 28.0 3.4 26 41-66 36-63 (259)
443 cd03219 ABC_Mj1267_LivG_branch 26.3 50 0.0011 28.5 2.3 26 41-66 24-51 (236)
444 COG0283 Cmk Cytidylate kinase 26.3 71 0.0015 27.7 3.1 30 43-72 4-35 (222)
445 TIGR00101 ureG urease accessor 26.3 1E+02 0.0022 26.2 4.1 24 44-67 2-27 (199)
446 TIGR00972 3a0107s01c2 phosphat 26.2 57 0.0012 28.5 2.6 26 41-66 25-52 (247)
447 cd03298 ABC_ThiQ_thiamine_tran 26.1 55 0.0012 27.7 2.5 26 41-66 22-49 (211)
448 KOG1534 Putative transcription 26.1 65 0.0014 28.0 2.8 29 44-73 7-35 (273)
449 PRK10536 hypothetical protein; 26.1 1.3E+02 0.0027 27.0 4.7 56 267-322 177-233 (262)
450 PRK12338 hypothetical protein; 26.0 71 0.0015 29.5 3.2 25 42-66 3-29 (319)
451 PRK13536 nodulation factor exp 26.0 51 0.0011 30.6 2.4 27 41-67 65-93 (340)
452 cd03296 ABC_CysA_sulfate_impor 26.0 54 0.0012 28.4 2.4 26 41-66 26-53 (239)
453 PRK08356 hypothetical protein; 25.9 1.1E+02 0.0024 25.6 4.2 28 43-74 5-34 (195)
454 PRK11701 phnK phosphonate C-P 25.9 56 0.0012 28.7 2.6 26 41-66 30-57 (258)
455 PRK13635 cbiO cobalt transport 25.8 58 0.0013 29.2 2.6 26 41-66 31-58 (279)
456 PRK13648 cbiO cobalt transport 25.8 56 0.0012 29.0 2.5 26 41-66 33-60 (269)
457 cd03248 ABCC_TAP TAP, the Tran 25.7 69 0.0015 27.4 3.0 26 41-66 38-65 (226)
458 smart00382 AAA ATPases associa 25.6 66 0.0014 24.1 2.7 26 44-69 3-30 (148)
459 PRK12727 flagellar biosynthesi 25.6 1.2E+02 0.0026 30.3 4.8 35 42-76 349-387 (559)
460 KOG0447 Dynamin-like GTP bindi 25.6 66 0.0014 32.0 3.0 24 41-64 306-331 (980)
461 COG1474 CDC6 Cdc6-related prot 25.6 53 0.0011 30.9 2.4 23 46-68 45-69 (366)
462 TIGR02524 dot_icm_DotB Dot/Icm 25.5 83 0.0018 29.5 3.7 25 42-66 133-159 (358)
463 PRK11124 artP arginine transpo 25.4 56 0.0012 28.4 2.4 26 41-66 26-53 (242)
464 cd03267 ABC_NatA_like Similar 25.3 74 0.0016 27.6 3.2 26 41-66 45-72 (236)
465 PRK08534 pyruvate ferredoxin o 25.2 3.9E+02 0.0085 22.0 11.2 94 45-164 3-98 (181)
466 cd03110 Fer4_NifH_child This p 25.2 65 0.0014 26.4 2.7 16 50-65 9-24 (179)
467 TIGR02881 spore_V_K stage V sp 25.1 58 0.0012 28.8 2.5 26 44-69 43-70 (261)
468 PRK10078 ribose 1,5-bisphospho 25.0 58 0.0013 27.1 2.4 21 45-65 4-26 (186)
469 cd03297 ABC_ModC_molybdenum_tr 25.0 57 0.0012 27.7 2.4 25 41-66 22-48 (214)
470 TIGR02533 type_II_gspE general 24.8 95 0.0021 30.5 4.1 27 34-60 233-261 (486)
471 PRK14262 phosphate ABC transpo 24.8 59 0.0013 28.4 2.5 26 41-66 27-54 (250)
472 PRK13949 shikimate kinase; Pro 24.7 83 0.0018 25.8 3.2 22 45-66 3-26 (169)
473 PRK14258 phosphate ABC transpo 24.7 61 0.0013 28.6 2.6 27 41-67 31-59 (261)
474 PRK13948 shikimate kinase; Pro 24.7 91 0.002 26.1 3.4 24 42-65 9-34 (182)
475 COG1066 Sms Predicted ATP-depe 24.6 1.5E+02 0.0032 28.5 5.0 125 30-158 77-211 (456)
476 PRK03731 aroL shikimate kinase 24.6 86 0.0019 25.4 3.3 21 45-65 4-26 (171)
477 PRK14242 phosphate transporter 24.6 71 0.0015 27.9 3.0 26 41-66 30-57 (253)
478 PRK13649 cbiO cobalt transport 24.5 54 0.0012 29.3 2.2 26 41-66 31-58 (280)
479 cd03254 ABCC_Glucan_exporter_l 24.5 71 0.0015 27.4 2.9 26 41-66 27-54 (229)
480 cd03245 ABCC_bacteriocin_expor 24.5 75 0.0016 27.0 3.0 26 41-66 28-55 (220)
481 cd03257 ABC_NikE_OppD_transpor 24.4 60 0.0013 27.8 2.4 26 41-66 29-56 (228)
482 PRK13645 cbiO cobalt transport 24.4 62 0.0014 29.1 2.6 26 41-66 35-62 (289)
483 PF14516 AAA_35: AAA-like doma 24.3 1.5E+02 0.0033 27.3 5.2 34 41-74 29-64 (331)
484 TIGR03005 ectoine_ehuA ectoine 24.3 59 0.0013 28.5 2.4 26 41-66 24-51 (252)
485 COG0378 HypB Ni2+-binding GTPa 24.3 1.2E+02 0.0027 25.8 4.1 29 43-72 13-43 (202)
486 PRK14248 phosphate ABC transpo 24.3 73 0.0016 28.2 3.0 26 41-66 45-72 (268)
487 cd03246 ABCC_Protease_Secretio 24.2 91 0.002 25.5 3.4 27 41-67 26-54 (173)
488 PRK11022 dppD dipeptide transp 24.2 53 0.0011 30.3 2.1 26 41-66 31-58 (326)
489 PRK02496 adk adenylate kinase; 24.2 92 0.002 25.7 3.4 22 45-66 3-26 (184)
490 cd03279 ABC_sbcCD SbcCD and ot 24.2 44 0.00095 28.5 1.5 23 43-65 28-52 (213)
491 TIGR02640 gas_vesic_GvpN gas v 24.1 55 0.0012 29.1 2.1 21 44-65 25-45 (262)
492 PRK10619 histidine/lysine/argi 24.1 62 0.0014 28.4 2.5 26 41-66 29-56 (257)
493 PRK08533 flagellar accessory p 24.0 1.7E+02 0.0037 25.4 5.2 34 42-76 23-59 (230)
494 cd03285 ABC_MSH2_euk MutS2 hom 24.0 96 0.0021 26.8 3.6 28 42-69 29-60 (222)
495 TIGR03410 urea_trans_UrtE urea 23.9 65 0.0014 27.7 2.5 27 41-67 24-52 (230)
496 PF00919 UPF0004: Uncharacteri 23.8 2.6E+02 0.0056 20.7 5.4 14 292-305 68-81 (98)
497 cd00820 PEPCK_HprK Phosphoenol 23.8 51 0.0011 25.1 1.6 21 42-62 14-36 (107)
498 COG5623 CLP1 Predicted GTPase 23.7 96 0.0021 28.5 3.5 30 42-72 98-130 (424)
499 PRK08338 2-oxoglutarate ferred 23.7 4.1E+02 0.0089 21.7 12.4 144 46-253 3-149 (170)
500 TIGR03411 urea_trans_UrtD urea 23.6 69 0.0015 27.8 2.7 26 41-66 26-53 (242)
No 1
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.8e-58 Score=431.31 Aligned_cols=296 Identities=27% Similarity=0.441 Sum_probs=252.5
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||.||++|++||.+++|+..|++++.+++++++.. ...|+|+|||||||||||+||+++|++.|+++.++||+|.|
T Consensus 70 ~d~vV~SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~-~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 70 FDLVVKSPGIPPTHPLVEAAKAAGIEIIGDIELFYRLS-GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhc-CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 36899999999999999999999999999999999986 36679999999999999999999999999999999999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
......+ ..+.|+.|+|+||+|++.... ++|++++||||++||+|||+|+|+|..+|.+|+++..+ ++|+
T Consensus 149 ~l~~~~~-------~~~~d~~VlElSSfQL~~~~~-~~P~iavilNi~~DHLD~H~s~e~Y~~aK~~i~~~~~~--~~Vi 218 (448)
T COG0771 149 ALELLEQ-------AEPADVYVLELSSFQLETTSS-LRPEIAVILNISEDHLDRHGSMENYAAAKLRILEGQTE--VAVI 218 (448)
T ss_pred HHHhhcc-------cCCCCEEEEEccccccccCcc-CCccEEEEecCCHHHhhhccCHHHHHHHHHHHHcCCcc--EEEE
Confidence 8876431 346789999999999998765 89999999999999999999999999999999997644 8999
Q ss_pred eCCChhhHHHHhc-cCccEEEeccCCCcc---cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059 162 PFGNQHLNEAIKG-HRFNLAWIGAFPGVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (331)
Q Consensus 162 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~ 237 (331)
|.||+++..+... ....+.+|+...... +..+... .. .+ +.-+....++++|.||++|+++|+ |+|..
T Consensus 219 n~dd~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~~~~~~---~~--~~-~~i~~~~~l~l~G~hn~~N~lAa~--a~a~~ 290 (448)
T COG0771 219 NADDAYLKTLADEATKARVIWFSFGEPLADGDYIYDGKL---VF--KG-EKLLPADELKLPGAHNLENALAAL--ALARA 290 (448)
T ss_pred eCCcHHHhhhhhhcccceeEEEEccccccccceeecchh---cc--cc-ccccchhhcCCcchhhHHHHHHHH--HHHHH
Confidence 9999999888765 344566666543221 0000000 00 01 111112368999999999999999 99999
Q ss_pred cCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhh
Q 020059 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317 (331)
Q Consensus 238 lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l 317 (331)
+|++.+.|.++|.+|++++||||.+. +.+|+.||+|++|+|+.|+..||+.++ +|+++|+|+.++.+ ||.+|
T Consensus 291 ~gv~~e~i~~~L~~F~gl~HR~e~v~-~~~gv~f~NDSKATN~~At~~AL~~~~-~~v~lI~GG~~Kg~------df~~L 362 (448)
T COG0771 291 LGVPPEAILEALSSFTGLPHRLEFVG-EKDGVLFINDSKATNVDATLAALSGFD-GPVILIAGGDDKGA------DFSPL 362 (448)
T ss_pred cCCCHHHHHHHHHhCCCCCcceEEEE-ecCCEEEecCCCCCCHHHHHHHHHcCC-CCEEEEECCCCCCC------ChhHH
Confidence 99999999999999999999999997 689999999999999999999999998 79999999999876 58899
Q ss_pred hhhhcce
Q 020059 318 IEPLNHH 324 (331)
Q Consensus 318 ~~~l~~~ 324 (331)
.+.+++.
T Consensus 363 ~~~~~~~ 369 (448)
T COG0771 363 AEILAKV 369 (448)
T ss_pred HHHhhhc
Confidence 9999764
No 2
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=100.00 E-value=5.2e-57 Score=432.42 Aligned_cols=294 Identities=23% Similarity=0.425 Sum_probs=245.7
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||+||+++++||++++|+++|+|++++.+++++++ +.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus 63 ~d~vv~sp~i~~~~p~~~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 63 ADLVVKSPGIPPDHPLVQAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 36899999999999999999999999999999999887 6689999999999999999999999999999999999998
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
...... ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++..++++.+|+
T Consensus 141 ~~~~~~--------~~~~~~~V~E~~~~~l~~~~~-~~p~iaViTNI~~DHld~~gs~e~~~~~K~~i~~~~~~~~~~i~ 211 (433)
T TIGR01087 141 ALEVLD--------QEGAELYVLELSSFQLETTES-LRPEIALILNISEDHLDWHGSFEDYVAAKLKIFARQTEGDVAVL 211 (433)
T ss_pred HHHHHh--------ccCCCEEEEEcChhHhcCCcc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 543221 135689999999998875543 79999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~ 241 (331)
|.||+.+..+......++.+||...+.. ..+.....+..+....+.++++|.||++|+++|+ +++..+|++
T Consensus 212 n~dd~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi~ 282 (433)
T TIGR01087 212 NADDPRFARLAQKSKAQVIWFSVEKDAE-------RGLCIRDGGLYLKPNDLEGSLLGLHNAENILAAI--ALAKSLGLN 282 (433)
T ss_pred ECCCHHHHHhhhhcCceEEEEeCCccCC-------CceEEECCEEEEeccccccCCCcHHHHHHHHHHH--HHHHHcCCC
Confidence 9999988777665556778887532111 0111111111111112468999999999999999 899999999
Q ss_pred HHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (331)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l 321 (331)
.+.|+++|++|++++||||++. ..+++.+|||+++|||+|+.++++.++ +|+++|+|++.+.+ ||+++.+.+
T Consensus 283 ~~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idD~~atn~~a~~~al~~~~-~~ii~I~Gg~~~~~------d~~~~~~~l 354 (433)
T TIGR01087 283 LEAILEALRSFKGLPHRLEYVG-QKNGVHFYNDSKATNVHATLAALSAFD-NPVILIVGGDDKGA------DFSPLAPAA 354 (433)
T ss_pred HHHHHHHHHhCCCCCCceEEEE-EECCEEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHH
Confidence 9999999999999999999996 457899999988999999999999995 47999999987654 577888877
Q ss_pred cc
Q 020059 322 NH 323 (331)
Q Consensus 322 ~~ 323 (331)
.+
T Consensus 355 ~~ 356 (433)
T TIGR01087 355 AG 356 (433)
T ss_pred Hh
Confidence 54
No 3
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=7.2e-57 Score=431.03 Aligned_cols=303 Identities=25% Similarity=0.363 Sum_probs=244.9
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||.||+++++||++++|+++|+|++++++++++.. ++.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus 64 ~d~vV~SPgI~~~~p~~~~a~~~gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p 142 (454)
T PRK01368 64 LDKIVLSPGIPLTHEIVKIAKNFNIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP 142 (454)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence 36899999999999999999999999999999998876 46689999999999999999999999999999999999998
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
.... ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+
T Consensus 143 ~l~~----------~~~~~~~VlE~ss~ql~~~~-~~~P~iavitNI~~DHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vl 211 (454)
T PRK01368 143 ALQA----------KASKDGYVLELSSFQLDLVK-TFTAKIAVLLNITPDHLDRHQDMDGYIAAKSKIFDRMDKDSYAVI 211 (454)
T ss_pred Hhcc----------cCCCCEEEEEcCchhhcccc-ccCCCEEEEecCChhHhhccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 6432 12347899999999987654 389999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHHhcc----CccEEEeccCCCcccccccccceEEEec-CceeEEEEeecCCCCcHHHHHHHHHHHHHHHHH
Q 020059 162 PFGNQHLNEAIKGH----RFNLAWIGAFPGVKIDTEAKTASFEVPA-VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (331)
Q Consensus 162 n~dd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~ 236 (331)
|.||+.+..+.... ..++++|+...............+.... ..... ...+.++++|.||++|+++|+ +++.
T Consensus 212 n~Dd~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~hn~~Na~aAi--a~~~ 288 (454)
T PRK01368 212 NIDNDYCREIFIKLQQEQRIKLIPFSVTKILENGISVVDDKISDNFFDDISF-KLPFNKNLQGKHNCENIAASY--AVAK 288 (454)
T ss_pred eCCcHHHHHHHHHhhcccCceEEEEeCCcccCCCcEEECCEEEEEecCCcce-EEEecCCCCchhhHHHHHHHH--HHHH
Confidence 99999988765332 2356777753211000000000111110 01001 112357899999999999999 8899
Q ss_pred HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhh
Q 020059 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316 (331)
Q Consensus 237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~ 316 (331)
.+|++.+.|+++|++|+++|||||++. ..+++.+|||++||||+|+.+++++++ ++++|+|++++.+ +|.+
T Consensus 289 ~lgi~~~~i~~~L~~F~~~~~Rle~v~-~~~gv~~i~DS~atN~~a~~~al~~~~--~i~lI~Gg~dk~~------~~~~ 359 (454)
T PRK01368 289 IIGVEPKKILESISSFQSLPHRMQYIG-SINNISFYNDSKATNAISAVQSIKALD--NIYWLAGGIPKEG------GIEE 359 (454)
T ss_pred HcCCCHHHHHHHHHhCCCCCcceEEEE-EECCeEEEECCCCCCHHHHHHHHHhcC--CeEEEecccCCCC------CHHH
Confidence 999999999999999999999999996 457899999999999999999999994 6999999996543 6888
Q ss_pred hhhhhcceeEEE
Q 020059 317 LIEPLNHHRCVI 328 (331)
Q Consensus 317 l~~~l~~~~~~i 328 (331)
|.+.+.+.+.++
T Consensus 360 L~~~~~~v~~v~ 371 (454)
T PRK01368 360 IKPYFSKIKKAY 371 (454)
T ss_pred HHHHHHhhcEEE
Confidence 888776544443
No 4
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.9e-56 Score=427.14 Aligned_cols=292 Identities=28% Similarity=0.421 Sum_probs=239.9
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||+||+++++||++++|+++|+|++++++++++.+ +.++|+||||||||||++||+++|+..|.++.++||+|.|
T Consensus 69 ~d~vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~ 146 (438)
T PRK04663 69 ADLVVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146 (438)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHH
Confidence 46899999999999999999999999999999998877 4689999999999999999999999999999999999998
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
.... . ..+.+++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.++++. .+.+|+
T Consensus 147 ~~~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iavitNi~~dHld~~gs~e~y~~aK~~i~~~---~~~~v~ 213 (438)
T PRK04663 147 ALDL-L--------EQDAELYVLELSSFQLETTS-SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIFDH---AELAVV 213 (438)
T ss_pred HHhh-h--------cCCCCEEEEEcChhhhccCc-ccCCCEEEEecCChhhCcccCCHHHHHHHHHHHHhC---CCEEEE
Confidence 6321 1 23468999999999887543 489999999999999999999999999999999985 378999
Q ss_pred eCCChhhHHHHhccCccEEEeccCC-CcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~ 240 (331)
|.||+....... ..++.+||... ++.+.. .....+.... +.. .+...+++++|.||++|+++|+ +++..+|+
T Consensus 214 n~dd~~~~~~~~--~~~~~~~g~~~~~~~~~~-~~~~~~~~~~-~~~-~~~~~~l~l~G~hNv~NalaAi--a~a~~lGi 286 (438)
T PRK04663 214 NRDDKQTYPDHA--ELQLVTFGFDQQDFGLAQ-HQGREWLADN-GQP-VLASAELKLVGRHNVANVLVVL--ALLDAAGV 286 (438)
T ss_pred eCCCHHHHhhhc--CCcEEEEecCCCCCCeEe-cCCeEEEEeC-Cce-eeehhhcCCcchhhHHHHHHHH--HHHHHcCC
Confidence 999998754432 34567887542 111110 0111222221 111 1123578999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEEcCCCCCCCCccCCChhhhhh
Q 020059 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE 319 (331)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~G~~~~~g~~~~~~~~~~l~~ 319 (331)
++++|+++|++|++++||||++. ..+++.+|||+|++||+|+.+|++.+. ++|+|+|+|+|.+.++ |.++.+
T Consensus 287 ~~~~i~~~L~~f~g~~~R~e~v~-~~~g~~~idDs~~tn~~s~~~Al~~~~~~~~~i~IlGg~~~~~~------~~~l~~ 359 (438)
T PRK04663 287 DYRKALDALKSYTGLTHRCQVVA-DNHGIKWVNDSKATNVASTLAALSGLEIEGKLYLLVGGVGKGAD------FSPLKP 359 (438)
T ss_pred CHHHHHHHHHhCCCCCCceEEee-eeCCcEEEeCCCcCCHHHHHHHHHhcccCCcEEEEECCccCCCC------HHHHHH
Confidence 99999999999999999999996 357899999999999999999999985 3689999999988874 667877
Q ss_pred hhc
Q 020059 320 PLN 322 (331)
Q Consensus 320 ~l~ 322 (331)
.++
T Consensus 360 ~~~ 362 (438)
T PRK04663 360 VLA 362 (438)
T ss_pred HHH
Confidence 775
No 5
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.7e-55 Score=423.05 Aligned_cols=305 Identities=27% Similarity=0.449 Sum_probs=244.8
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC-CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN 80 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~ 80 (331)
.++||+||+++++||++++|+++|+|++++++++++... .+.++|+||||||||||+.||+++|+..|.++.+.||+|.
T Consensus 68 ~d~vv~spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~ 147 (445)
T PRK04308 68 FDILALSPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGT 147 (445)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccH
Confidence 468999999999999999999999999999999988762 1468999999999999999999999999999889999999
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEE
Q 020059 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (331)
|+....... ...+.|++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++ +++.+|
T Consensus 148 ~~~~~~~~~-----~~~~~d~~VlE~~~~~l~~~~-~~~p~iaviTNI~~DHld~~~t~e~~~~~K~~i~~---~~~~~i 218 (445)
T PRK04308 148 PVLEAELQR-----EGKKADVWVLELSSFQLENTE-SLRPTAATVLNISEDHLDRYDDLLDYAHTKAKIFR---GDGVQV 218 (445)
T ss_pred HHHHHHHhh-----cCCCCcEEEEEeChHHhCcCc-ccCCCEEEEecCChHHhcccCCHHHHHHHHHHHhc---CCCEEE
Confidence 976543210 123578999999999887654 47999999999999999999999999999999987 468999
Q ss_pred EeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (331)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~ 240 (331)
+|.||+....+... ..++.+|+.....++........+... +.. .....+++++|.||++|+++|+ +++..+|+
T Consensus 219 ~n~dd~~~~~~~~~-~~~v~~~~~~~~~d~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 292 (445)
T PRK04308 219 LNADDAFCRAMKRA-GREVKWFSLEHEADFWLERETGRLKQG--NED-LIATQDIPLQGLHNAANVMAAV--ALCEAVGL 292 (445)
T ss_pred EeCCcHHHHHHhhc-CCcEEEecCCCCCceeEeccCCEEEEc--Cce-eeehhccCCcChhhHHHHHHHH--HHHHHcCC
Confidence 99999988776543 356778875321111000000112221 111 1112468999999999999999 88999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (331)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~ 320 (331)
++++++++|++|+++|||||++. ..++..+|||+|+|||+|+.++++.+. +++++|+|+|.+.+ ||+++.+.
T Consensus 293 ~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~iDDs~~~n~~s~~~al~~~~-~~~i~IlGg~~~~~------~~~~~~~~ 364 (445)
T PRK04308 293 PREALLEHVKTFQGLPHRVEKIG-EKNGVVFIDDSKGTNVGATAAAIAGLQ-NPLFVILGGMGKGQ------DFTPLRDA 364 (445)
T ss_pred CHHHHHHHHhhCCCCCCceEEEE-eeCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEeCCCCCCC------CHHHHHHH
Confidence 99999999999999999999996 357889999999999999999999995 47999999998765 56677776
Q ss_pred hcc-eeEEEe
Q 020059 321 LNH-HRCVIT 329 (331)
Q Consensus 321 l~~-~~~~i~ 329 (331)
+.+ .+.+++
T Consensus 365 l~~~~~~vil 374 (445)
T PRK04308 365 LAGKAKGVFL 374 (445)
T ss_pred HHHhCcEEEE
Confidence 654 344443
No 6
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.1e-55 Score=422.84 Aligned_cols=300 Identities=26% Similarity=0.397 Sum_probs=243.7
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||+||+++++||++++|+++|++++++++++++.+ +.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus 69 ~d~vV~sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 69 ASEIIISPGLALDTPALRAAAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 36899999999999999999999999999999999887 5689999999999999999999999999999999999998
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
..... ..+.+++|+|+|+++++.... ++|+++|||||++||+|+|||+|+|+++|.++++. .+.+|+
T Consensus 147 ~~~~~---------~~~~~~~V~E~ss~~l~~~~~-~~P~iaVITNI~~DHld~~gs~e~~~~~K~~i~~~---~~~~V~ 213 (448)
T PRK03803 147 ALDLL---------SDDPELYVLELSSFQLETTHS-LNAEVATVLNISEDHMDRYSDLEAYHQAKHRIYRG---AKQVVF 213 (448)
T ss_pred HHHHh---------cCCCCEEEEEcChhhhCcCcc-cCccEEEEecCChhHcccCCCHHHHHHHHHHHHhC---CCeEEE
Confidence 74321 124588999999999876654 79999999999999999999999999999999984 478999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCC----cccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPG----VKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~ 237 (331)
|.||+....+... ..++.+|+.... +.+... ....+.... +. ..+...+++++|.||++|+++|+ +++..
T Consensus 214 n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~l~l~G~Hn~~NalaAi--a~a~~ 287 (448)
T PRK03803 214 NRDDALTRPLVPD-NQPCLSFGLNAPDFDEWGLREG-DGETYLAHG-FE-RLMPVRELKLRGSHNLANALAAL--ALGEA 287 (448)
T ss_pred eCCCHHHHHHhhc-CCcEEEEeCCCCCcCceEEEec-CCeEEEEeC-Cc-eEEehhccCCCCHHHHHHHHHHH--HHHHH
Confidence 9999988776543 245677775311 111000 011122211 11 11122468999999999999999 89999
Q ss_pred cCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCCh
Q 020059 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGF 314 (331)
Q Consensus 238 lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~ 314 (331)
+|++++.|+++|++|+++|||||++. ..+++.+|||+|||||+|+.++++.+. ++|+++|+|++.+.+ ||
T Consensus 288 lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~gv~~idDs~atN~~a~~~al~~l~~~~~~~iilI~Gg~~k~~------d~ 360 (448)
T PRK03803 288 AGLPKEAMLEVLRTFTGLPHRCEWVR-EVAGVDYYNDSKGTNVGATVAAIEGLGAHIQGKLVLIAGGDGKGA------DF 360 (448)
T ss_pred cCCCHHHHHHHHhhCCCCCCceEEEE-EeCCeEEEEcCCcCCHHHHHHHHHhhhhcCCCCEEEEECCCCCCC------CH
Confidence 99999999999999999999999996 457789999999999999999999984 258999999987754 68
Q ss_pred hhhhhhhcc-eeEEEe
Q 020059 315 EKLIEPLNH-HRCVIT 329 (331)
Q Consensus 315 ~~l~~~l~~-~~~~i~ 329 (331)
+++.+.+.+ .+.+++
T Consensus 361 ~~l~~~l~~~~~~vil 376 (448)
T PRK03803 361 SPLREPVAKYVRAVVL 376 (448)
T ss_pred HHHHHHHHhhCCEEEE
Confidence 888888854 355543
No 7
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.2e-55 Score=422.60 Aligned_cols=301 Identities=24% Similarity=0.325 Sum_probs=237.4
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC-----CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
++||.||+++++||++++|+++|+|++++++++++... ...++|+||||||||||++||+++|+..|.++.+.||
T Consensus 72 D~VV~SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn 151 (488)
T PRK03369 72 ALVVTSPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN 151 (488)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC
Confidence 68999999999999999999999999999999876531 1347999999999999999999999999999899999
Q ss_pred CcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCc
Q 020059 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (331)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~ 157 (331)
+|.|+... + ..+.+++|+|+|+++++... .++|+++|||||++||+|+|||+|+|+++|.+|++ ++
T Consensus 152 iG~p~~~~-~--------~~~~~~~VlE~ss~ql~~~~-~~~P~vaVITNI~~DHLd~~gt~e~ya~aK~~I~~----~~ 217 (488)
T PRK03369 152 IGSPVLDV-L--------DEPAELLAVELSSFQLHWAP-SLRPEAGAVLNIAEDHLDWHGTMAAYAAAKARALT----GR 217 (488)
T ss_pred CchHHHHh-c--------cCCCCEEEEECChHHhCccc-ccCCCEEEEcCCCHHHhhhcCCHHHHHHHHHHHhc----CC
Confidence 99997432 1 23578999999999887553 48999999999999999999999999999999997 37
Q ss_pred eEEEeCCChhhHHHHhccCcc-EEEeccCCCcccccccccceEEEe--cCceeEEEEeecCCCCcHHHHHHHHHHHHHHH
Q 020059 158 LGLLPFGNQHLNEAIKGHRFN-LAWIGAFPGVKIDTEAKTASFEVP--AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (331)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~ 234 (331)
.+|+|.||+....+....... ...++.......+.......+... ..+.. .....+++++|.||++|+++|+ ++
T Consensus 218 ~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~G~hnv~NalaAl--a~ 294 (488)
T PRK03369 218 VAVVGLDDSRAAALLDTAPAPVRVGFRLGEPAAGELGVRDGHLVDRAFADDLR-LAPVASIPVPGPVGVLDALAAA--AL 294 (488)
T ss_pred EEEEECCCHHHHHHHHhCCCcEEEEEeCCCCCcCCceEECCEEEEeccCCccc-eechhhcCCCcHhHHHHHHHHH--HH
Confidence 899999999887765433222 222321110000000000011000 00100 0112468899999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCCh
Q 020059 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGF 314 (331)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~ 314 (331)
+..+|++.+.|+++|++|++++||||++. ..+++.+|||+|||||+|+.++++.++ ++++|+|++.+.. ||
T Consensus 295 a~~lGi~~e~i~~~L~~f~~~~gR~E~v~-~~~gv~iIDDS~AhNp~s~~aal~~~~--~iilI~GG~~k~~------d~ 365 (488)
T PRK03369 295 ARAVGVPAGAIADALASFRVGRHRAEVVA-VADGITYVDDSKATNPHAARASILAYP--RVVWIAGGLLKGA------SV 365 (488)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCccEEEE-cCCCEEEEECCCCCCHHHHHHHHHhCC--CeEEEecCcCCCC------CH
Confidence 99999999999999999999999999996 467889999999999999999999884 6999998888753 78
Q ss_pred hhhhhhhc-ceeEEEe
Q 020059 315 EKLIEPLN-HHRCVIT 329 (331)
Q Consensus 315 ~~l~~~l~-~~~~~i~ 329 (331)
.++++.++ +.+.+++
T Consensus 366 ~~l~~~l~~~~~~vi~ 381 (488)
T PRK03369 366 DALVAEMASRLVGAVL 381 (488)
T ss_pred HHHHHHHhhheeEEEE
Confidence 89999885 4566654
No 8
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.2e-54 Score=416.17 Aligned_cols=302 Identities=26% Similarity=0.363 Sum_probs=244.3
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||.||+++++||++.+|+++|+|++++++.+.+.. +.++|+||||||||||++||+++|+..|+++.++||+|.|
T Consensus 78 ~dlVV~Spgi~~~~p~~~~a~~~~i~i~s~~e~~~~~~--~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p 155 (458)
T PRK01710 78 FDVIFKTPSMRIDSPELVKAKEEGAYITSEMEEFIKYC--PAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTP 155 (458)
T ss_pred CCEEEECCCCCCCchHHHHHHHcCCcEEechHHhhhhc--CCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChh
Confidence 47899999999999999999999999999999887765 5689999999999999999999999999999899999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
+...... ..+.+++|+|+|++++.... ++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+
T Consensus 156 ~~~~~~~-------~~~~~~~VlE~~~~~~~~~~--~~PdiaViTNI~~dHld~~~s~e~~~~aK~~i~~~~~~~~~~v~ 226 (458)
T PRK01710 156 LFSNIEE-------IKEEDKVVLELSSFQLMTMD--VSPEVAVVTNLSPNHLDVHKDMEEYIDAKKNIFKYQSENDLLVL 226 (458)
T ss_pred HHHHHhh-------CCCCCEEEEEcCccccccCC--CCCCEEEEecCChhhccccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 8643211 22568899999998776553 69999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCCccccccc-ccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEA-KTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~ 240 (331)
|.||+.+..+......++++||...+.. .... ....+... +... ....+++++|.||++|+++|+ |++..+ +
T Consensus 227 n~Dd~~~~~~~~~~~~~~~~fg~~~~~~-~~~~~~~~~~~~~--~~~~-~~~~~l~l~G~hnv~NalaA~--a~a~~~-i 299 (458)
T PRK01710 227 NKDNEITNGMEKEAKGDVVKFSRKEKVY-EGAYLKNGKLYIR--GKEV-CKKDDIKLKGMHNVENLLAAF--CAVNDD-V 299 (458)
T ss_pred eCCcHHHHHHHhhcCCcEEEEeCCCCCC-CceEEeCCEEEEc--CceE-EEhhhcCCccHhHHHHHHHHH--HHHHhC-C
Confidence 9999998777654445677887532110 0000 01112221 1111 113578999999999999999 777776 9
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (331)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~ 320 (331)
+.++|.++|++|++++||||.+. ..+++.+|||+|+|||.|+.++|+.+.. ++++|+|+..+ ..+|.++.+.
T Consensus 300 ~~~~i~~~L~~f~~~~~R~e~~~-~~~g~~~i~Dsy~~np~s~~~al~~~~~-~~i~IlGg~~~------~~~~~~l~~~ 371 (458)
T PRK01710 300 SIESMKKVATTFSGVEHRCEFVR-EINGVKYYNDSIASSPTRTLAGLKAFEK-PVILIAGGYDK------KIPFEPLAEE 371 (458)
T ss_pred CHHHHHHHHHhCCCCCcceEEEE-EECCEEEecccccCCHHHHHHHHHhCCC-CEEEEeCCcCC------CCCHHHHHHH
Confidence 99999999999999999999986 3578999999999999999999999964 78999997543 2479999987
Q ss_pred hc-ceeEEEe
Q 020059 321 LN-HHRCVIT 329 (331)
Q Consensus 321 l~-~~~~~i~ 329 (331)
+. ..+.+++
T Consensus 372 ~~~~~~~vi~ 381 (458)
T PRK01710 372 GYEKIKTLIL 381 (458)
T ss_pred HHhhccEEEE
Confidence 75 3344543
No 9
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.5e-54 Score=414.84 Aligned_cols=302 Identities=26% Similarity=0.361 Sum_probs=239.3
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhh-----CCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQV-----IPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~-----~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
++||+||+++++||++++|+++|++++++++++.+. +....++|+||||||||||++||+++|+..|+++.+.||
T Consensus 76 d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gn 155 (473)
T PRK00141 76 SLVVTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGN 155 (473)
T ss_pred CEEEeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEecc
Confidence 689999999999999999999999999999986553 212347999999999999999999999999999999999
Q ss_pred CcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCc
Q 020059 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTK 157 (331)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~ 157 (331)
+|.|++.... ...+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|+++|.++++ .+
T Consensus 156 ig~p~~~~l~-------~~~~~~~~V~E~ss~~l~~~~-~~~pdiaViTNi~~dHLd~~~s~e~y~~aK~~l~~----~~ 223 (473)
T PRK00141 156 IGVPVSAALV-------AQPRIDVLVAELSSFQLHWSP-TLTPDVGVVLNLAEDHIDWHGSMRDYAADKAKVLR----GP 223 (473)
T ss_pred CChhHHHHHh-------cCCCCCEEEEecCCcccccCc-ccCCCEEEEcCCChhhccccCCHHHHHHHHHHHhh----CC
Confidence 9999874322 134568999999999886543 48999999999999999999999999999999996 36
Q ss_pred eEEEeCCChhhHHHHhcc-CccEEEeccCCCcccccccccceEEEecCceeEEEE-eecCCCCcHHHHHHHHHHHHHHHH
Q 020059 158 LGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLG 235 (331)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~NalaA~~~a~~ 235 (331)
.+|+|.||+.+..+.... ..++++||.........+.....+....++..+.+. ...++++|.||++|+++|+ +++
T Consensus 224 ~~vln~Dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~aA~--a~~ 301 (473)
T PRK00141 224 VAVIGADDEYVVQLTSAADLSGLIGFTMGEPAAGQVGVRDGELVDNAFGQNVVLASAEGISPAGPAGVLDALAAA--AVA 301 (473)
T ss_pred EEEEECCCHHHHHHHhhcCCCcEEEEeCCCCCcCcceEECCEEEEecCCCceEEeehhhcCCCcHhHHHHHHHHH--HHH
Confidence 899999999988776543 235678875321100000111112211122222221 2468999999999999999 899
Q ss_pred HHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCC-CCCCCCccCCCh
Q 020059 236 LDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQ-AKVLNGQESNGF 314 (331)
Q Consensus 236 ~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~-~~~g~~~~~~~~ 314 (331)
..+|++.+.++++|++|++++||||++. ..++..+|||+|||||+|++++++.++ ++++|+|++ .++ |+
T Consensus 302 ~~lgi~~~~i~~~l~~~~~~~~R~e~~~-~~~~~~iiDdsyahNp~s~~~~l~~l~--~~~~i~gG~~kdk-------d~ 371 (473)
T PRK00141 302 RSQGVAPEAIARALSSFEVAGHRGQVVA-EHGGVTWIDNSKATNPHAADAALAGHE--SVVWVAGGQLKGA-------DI 371 (473)
T ss_pred HHcCCCHHHHHHHHhhCCCCCCceEEEE-EeCCEEEEEcCCCCCHHHHHHHHHhcC--CEEEEecCccCCC-------Ch
Confidence 9999999999999999999888999996 356789999999999999999999995 688999666 444 78
Q ss_pred hhhhhhhcc-eeEEE
Q 020059 315 EKLIEPLNH-HRCVI 328 (331)
Q Consensus 315 ~~l~~~l~~-~~~~i 328 (331)
+++++.+.+ .+.++
T Consensus 372 ~~~~~~l~~~~~~~~ 386 (473)
T PRK00141 372 DDLIRTHAPRIKAAV 386 (473)
T ss_pred HHHHHHHHhhccEEE
Confidence 899988854 34343
No 10
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.9e-54 Score=414.27 Aligned_cols=305 Identities=27% Similarity=0.397 Sum_probs=246.4
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
+++||.||+++++||++++|+++|++++++.+++.+.. +.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 69 ~d~vV~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~--~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p 146 (447)
T PRK02472 69 FDLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYLIS--EAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYP 146 (447)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChh
Confidence 57899999999999999999999999999999866665 5689999999999999999999999999999999999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
.+.... ...+.+++|+|+|++++.... .++|+++|||||++||+++|||+|+|+++|.++++..++.+.+|+
T Consensus 147 ~~~~~~-------~~~~~~~~V~E~ss~~~~~~~-~~~P~iaVITnI~~DHld~~gt~e~i~~~K~~i~~~~~~~~~~v~ 218 (447)
T PRK02472 147 ASEVAQ-------KATADDTLVMELSSFQLMGIE-TFRPHIAVITNIYPAHLDYHGTFENYVAAKWNIQKNQTEDDYLVI 218 (447)
T ss_pred hHHHHh-------cCCCCCEEEEEcCchhhCccc-ccCCCEEEEeccChhhhcccCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 765311 123468999999998876443 479999999999999999999999999999999998878889999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVD 241 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~ 241 (331)
|.||+....+......++.+|+...............+... +.. .+...+++++|.||++|+++|+ +++..+|++
T Consensus 219 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~l~l~G~hn~~Na~aAi--a~~~~lgi~ 293 (447)
T PRK02472 219 NFDQEEVKELAKQTKATVVPFSTTEKVEDGAYIKDGALYFK--GEK-IMAADDIVLPGSHNLENALAAI--AAAKLLGVS 293 (447)
T ss_pred eCCcHHHHHHHhhcCceEEEeecCCCCcCceEEECCEEEEC--Cce-EEehhhcCCCCHHHHHHHHHHH--HHHHHcCCC
Confidence 99999887766555556777775422100000000012221 111 1112368999999999999999 889999999
Q ss_pred HHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (331)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l 321 (331)
.+.|+++|++|++++||||++. ..++..+|||+|||||+|+.++++.+ ++|+++|+|++... .+|.++++.+
T Consensus 294 ~~~i~~~L~~f~~~~~R~e~~~-~~~g~~vi~D~~a~N~~s~~~al~~~-~~~ii~I~g~~~~~------~~~~~l~~~l 365 (447)
T PRK02472 294 NEAIREVLSTFSGVKHRLQYVG-TIDGRKFYNDSKATNILATQKALSGF-NQPVVLLAGGLDRG------NEFDELVPYL 365 (447)
T ss_pred HHHHHHHHHhCCCCCCcceEEE-EECCeEEEECCCCCCHHHHHHHHHhC-CCCEEEEECCCCCC------CCHHHHHHHH
Confidence 9999999999999999999996 35678999998899999999999998 46899999975432 2788999888
Q ss_pred cceeEEEe
Q 020059 322 NHHRCVIT 329 (331)
Q Consensus 322 ~~~~~~i~ 329 (331)
.+.+.+++
T Consensus 366 ~~~~~v~~ 373 (447)
T PRK02472 366 KNVKAMVV 373 (447)
T ss_pred hccCEEEE
Confidence 66655543
No 11
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=6.7e-54 Score=413.89 Aligned_cols=306 Identities=26% Similarity=0.407 Sum_probs=242.9
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||+||+++++||++++|++.|++++++++++++.. .+.++|+||||||||||++||+++|+..|.++..+||+|.|
T Consensus 69 ~d~vv~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~ 147 (459)
T PRK02705 69 PDLVVVSPGIPWDHPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYA 147 (459)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChh
Confidence 36799999999999999999999999999999998876 46789999999999999999999999999999899999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
...... + ......+.|++|+|+|+++++..+. ++|+++|||||++||+++|||+|+|+++|.++++ +++.+|+
T Consensus 148 ~~~~~~--~-~~~~~~~~d~~VlE~~s~~l~~~~~-~~p~iaVITNI~~DHld~~gt~e~~~~~K~~i~~---~~~~~Vl 220 (459)
T PRK02705 148 ACELAL--L-RSGKAQKPDWIVAELSSYQIESSPE-LAPKIGIWTTFTPDHLERHGTLENYFAIKASLLE---RSEIRIL 220 (459)
T ss_pred HHHHHh--h-hhccCCCCCEEEEEccccccccCcc-cCCCEEEEecCChhhhcccCCHHHHHHHHHHHhc---cCCEEEE
Confidence 875432 0 0011346789999999999887765 8999999999999999999999999999999998 3679999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCC-cccc-cccc--cceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPG-VKID-TEAK--TASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~ 237 (331)
|.||+.+..+..... +..+++.... .... .+.. .....+.. +.. .+...+++++|.||++|+++|+ +++..
T Consensus 221 n~dd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~NalaAi--a~a~~ 295 (459)
T PRK02705 221 NGDDPYLRQHRSSWP-KGYWTSTQGKASLLGQADGWILEEGWVVER-GEP-LFPLSALKMPGAHNLQNLLLAV--AAARL 295 (459)
T ss_pred ECCCHHHHHHHhcCC-ceEEeccCCccccccccceeEecCCEEEEC-Ccc-eeeHHHcCCccHHHHHHHHHHH--HHHHH
Confidence 999998877754432 3456654211 1100 0000 00011111 110 1111358999999999999999 89999
Q ss_pred cCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhh
Q 020059 238 IGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKL 317 (331)
Q Consensus 238 lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l 317 (331)
+|++++.+.++|++|++++||||++. ..+++.+|||+|||||+|+.++++.++ +++++|+|+|.+.++ +.++
T Consensus 296 lgv~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~ii~Ds~a~N~~s~~~al~~l~-~~~i~IlGg~~~~~d------~~~~ 367 (459)
T PRK02705 296 AGLSAEAIAEALRSFPGVPHRLERIG-TINGIDFINDSKATNYDAAEVGLKAVP-GPVILIAGGEAKQGD------DSAW 367 (459)
T ss_pred cCCCHHHHHHHHHhCCCCCCceEEEE-eeCCcEEEEeCCCCCHHHHHHHHHhCC-CCeEEEecCccCCCC------HHHH
Confidence 99999999999999999999999986 356789999988999999999999996 478999999988764 6677
Q ss_pred hhhhcc-eeEEE
Q 020059 318 IEPLNH-HRCVI 328 (331)
Q Consensus 318 ~~~l~~-~~~~i 328 (331)
++.+.+ .+.++
T Consensus 368 ~~~l~~~~~~vi 379 (459)
T PRK02705 368 LKQIKAKAAAVL 379 (459)
T ss_pred HHHHHhheeEEE
Confidence 777743 34444
No 12
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=8.3e-54 Score=410.72 Aligned_cols=293 Identities=27% Similarity=0.418 Sum_probs=237.9
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (331)
+++|.||+++++||++.+|+++|++++++.+++.+.. +.++|+||||||||||++||+++|+..|+++.++||+|.|.
T Consensus 67 d~vv~spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p~ 144 (438)
T PRK03806 67 DLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLPA 144 (438)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchhH
Confidence 6899999999999999999999999999999987766 56899999999999999999999999999999999999986
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceEEE
Q 020059 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
... . ..+.+++|+|+|+++++... .++|+++|||||++||+|+| +|+|+|+++|.++++. .+.+|+
T Consensus 145 ~~~-~--------~~~~~~~V~E~ss~~l~~~~-~~~p~iaViTNI~~DHld~~g~s~e~~~~~K~~i~~~---~~~~v~ 211 (438)
T PRK03806 145 LSL-L--------DQECELYVLELSSFQLETTS-SLKAAAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCVV 211 (438)
T ss_pred HHh-h--------ccCCCEEEEEccchhhccCc-ccCCCEEEEecCcHHHhccccCCHHHHHHHHHHHHhC---CCeEEE
Confidence 321 1 23468999999999887654 37899999999999999999 5999999999999984 478999
Q ss_pred eCCChhhHHHHhccCccEEEeccCC-CcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFP-GVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~ 240 (331)
|.||+....+... ..++.+|+... ++..... ....+.... +.. .+..++++++|.||++|+++|+ |++..+|+
T Consensus 212 n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~-~~~~~~l~l~G~hn~~Na~aAi--a~a~~lgi 285 (438)
T PRK03806 212 NADDALTMPIRGA-DKRCVSFGVNMGDYHLNRQ-QGETWLRVK-GEK-VLNTKEMKLSGQHNYTNALAAL--ALADAVGI 285 (438)
T ss_pred eCCCHHHHHHhcC-CceEEEEecCCCceEEEec-CCeEEEEec-Cce-eeehhhcCCcccccHHHHHHHH--HHHHHcCC
Confidence 9999988775432 34566776431 1111100 111111111 111 1123468999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-CCcEEEEEcCCCCCCCCccCCChhhhhh
Q 020059 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-GHKCVILLGGQAKVLNGQESNGFEKLIE 319 (331)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-~~~~i~V~G~~~~~g~~~~~~~~~~l~~ 319 (331)
++++++++|++|++++||||++. ..+++.+|||+|+|||+|++++++.+. ++|+++|+|++.+.+ ||.++.+
T Consensus 286 ~~~~i~~~L~~f~~~~gR~E~v~-~~~~~~~i~Ds~a~n~~a~~~al~~l~~~~~~i~IlG~~~k~~------d~~~l~~ 358 (438)
T PRK03806 286 PRASSLKALTTFTGLPHRFQLVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPLAR 358 (438)
T ss_pred CHHHHHHHHHhCCCCCCeEEEEE-eeCCEEEEEcCCCCCHHHHHHHHHhCccCCcEEEEECCcCCCC------CHHHHHH
Confidence 99999999999999999999996 356889999988999999999999996 357999999987765 5778887
Q ss_pred hhcc
Q 020059 320 PLNH 323 (331)
Q Consensus 320 ~l~~ 323 (331)
.+++
T Consensus 359 ~l~~ 362 (438)
T PRK03806 359 YLNG 362 (438)
T ss_pred HHHh
Confidence 7753
No 13
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.2e-53 Score=411.02 Aligned_cols=303 Identities=23% Similarity=0.310 Sum_probs=241.7
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHH-HHhhCCC---CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDF-AAQVIPR---SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~-~~~~~~~---~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
.++||.||+++++||++++|+++|+|+++++++ +.+.... ..++|+||||||||||+.||+++|+..|.++.+.||
T Consensus 70 ~d~vV~SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~Gn 149 (468)
T PRK04690 70 FDVVVKSPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGN 149 (468)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCC
Confidence 368999999999999999999999999999998 4443311 247999999999999999999999999998999999
Q ss_pred CcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059 78 LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (331)
Q Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~ 156 (331)
+|.|+..... ...+.+++|+|+|++++..... .++|+++|||||++||+|+|||+|+|.++|.++++..++
T Consensus 150 iG~p~~~~~~-------~~~~~~~~VlE~ss~q~~~~~~~~~~P~iaVItNI~~DHld~~gs~e~y~~aK~~i~~~~~~- 221 (468)
T PRK04690 150 IGVPLLEVLA-------PQPAPEYWAIELSSYQTGDVARSGARPELAVVLNLFPEHLDWHGGEARYYRDKLSLVTEGRP- 221 (468)
T ss_pred CCcchHHHhc-------cCCCCcEEEEEecCCcccccccccCCCCEEEEcCCCHHHhcccCCHHHHHHHHHHHHhCCCC-
Confidence 9999854321 1235689999999998765543 378999999999999999999999999999999987543
Q ss_pred ceEEEeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHH
Q 020059 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGL 236 (331)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~ 236 (331)
+.+|+|.||+....+.. ...++.+|+...+.... ..+.+.. + ...+....++++|.||++|+++|+ +++.
T Consensus 222 ~~~v~n~dd~~~~~~~~-~~~~v~~~~~~~~~~~~-----~~~~~~~-~-~~~~~~~~~~l~G~h~~~Na~~A~--a~~~ 291 (468)
T PRK04690 222 RIALLNAADPRLAALQL-PDSEVVWFNHPDGWHVR-----GDVVYRG-E-QALFDTALVPLPGRHNRGNLCAVL--AALE 291 (468)
T ss_pred CeEEEeCccHHHHHHhc-CCCeEEEeeCCccceec-----ceEEEcC-C-ceEEeeccccCccHhhHHHHHHHH--HHHH
Confidence 67899999998766532 23466777643211110 1122221 1 111223468899999999999999 8889
Q ss_pred HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhh
Q 020059 237 DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEK 316 (331)
Q Consensus 237 ~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~ 316 (331)
.+|++.+.|+++|++|+++|||||++. ..+|+.+||||+||||+++.++++.++.+++++|+|++.++. ||.+
T Consensus 292 ~lgi~~~~i~~~l~~~~~~~gR~e~~~-~~~g~~iidDs~ahNp~a~~~al~~~~~~~i~~i~Gg~~k~k------d~~~ 364 (468)
T PRK04690 292 ALGLDAVALAPAAAGFRPLPNRLQELG-SRDGITYVNDSISTTPHASLAALDCFAGRRVALLVGGHDRGL------DWTD 364 (468)
T ss_pred HcCCCHHHHHHHHHhCCCCCCCcEEEE-ccCCeEEEEeCCCCCHHHHHHHHHhccCCcEEEEEcCCCCCC------CHHH
Confidence 999999999999999998899999996 456899999988999999999999987668999999875432 7889
Q ss_pred hhhhhcce--eEEEe
Q 020059 317 LIEPLNHH--RCVIT 329 (331)
Q Consensus 317 l~~~l~~~--~~~i~ 329 (331)
+++.+.+. +.+++
T Consensus 365 l~~~l~~~~~~~v~~ 379 (468)
T PRK04690 365 FAAHMAQRAPLEIVT 379 (468)
T ss_pred HHHHHHhccCeEEEE
Confidence 99988653 44444
No 14
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=2.2e-53 Score=410.09 Aligned_cols=304 Identities=26% Similarity=0.353 Sum_probs=238.7
Q ss_pred ceeeeeccccccCCh----HHHHHHHcCCeeeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 2 WMLWLFLLEFQLKAT----GLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p----~~~~a~~~g~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.++||+||+++++|| ++..|++.|+|++++++++++.+. .+.++|+||||||||||++||+++|+..|+++.+
T Consensus 66 ~d~vv~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~ 145 (460)
T PRK01390 66 FAALVLSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQM 145 (460)
T ss_pred CCEEEECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEE
Confidence 468999999999988 999999999999999999887641 2568999999999999999999999999999999
Q ss_pred cccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccC
Q 020059 75 GGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV 154 (331)
Q Consensus 75 ~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~ 154 (331)
+||+|.|+..... ..+.+++|+|+|+++++..+. ++|+++|||||+.||+++|||+|+|+++|+++++..+
T Consensus 146 ~gnig~~~~~~~~--------~~~~~~~V~E~~~~~ld~t~~-i~P~iaVITNI~~DHld~lgsle~ia~~K~~ii~~~~ 216 (460)
T PRK01390 146 GGNIGTAVLTLEP--------PPAGRVYVLELSSYQIDLAPS-LDPDVGVLLNLTPDHLDRHGTMEGYAAAKERLFAGQG 216 (460)
T ss_pred cCccchhhhhccc--------CCCCCEEEEEcCccccccccc-cCCCEEEEecCChhHhcccCCHHHHHHHHHHHHhcCC
Confidence 9999998765321 235689999999999876554 7999999999999999999999999999999999776
Q ss_pred CCceEEEeCCChhhHHHHhcc---CccEEEeccCCCc--ccccccccceEEEecCceeEEEEe-ecCCCCcHHHHHHHHH
Q 020059 155 NTKLGLLPFGNQHLNEAIKGH---RFNLAWIGAFPGV--KIDTEAKTASFEVPAVGVVSQLQL-HNMKVMGRHNYHNAAV 228 (331)
Q Consensus 155 ~~~~~v~n~dd~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~G~~n~~Nala 228 (331)
+ +.+|+|.||+.+..+.... ..++.+++..... ..... ....+..........+.. ..++++|.||++|+++
T Consensus 217 ~-~~~V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~G~hn~~Na~a 294 (460)
T PRK01390 217 P-DTAVIGVDDAYCRAIADRLEAAGRRVVRISAGKPLADGVYAD-GGKLVDARGGRQVEIADLRGIPSLPGAHNAQNAAA 294 (460)
T ss_pred C-CEEEEeCCCHHHHHHHHhccccCceEEEEeCCCCCcCceEEe-CCEEEEecCCCcceeeeHHhhccCCchhHHHHHHH
Confidence 6 8999999999887765432 2356677643210 00000 011122111000001100 0157899999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCC
Q 020059 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG 308 (331)
Q Consensus 229 A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~ 308 (331)
|+ +++..+|++.+.|+++|++|+++|||||++. ..++..+|||+|||||+|+.++|+.++ ++++|+|+++++.
T Consensus 295 Ai--aa~~~lgi~~~~i~~gL~~~~~~~gR~e~i~-~~~g~~vIdDs~ahNp~s~~~aL~~~~--~i~~I~G~~d~~~-- 367 (460)
T PRK01390 295 AY--AAARALGLSPEEIAAGLASFPGLAHRMEQVG-RRGGVLFVNDSKATNADAAAKALSSFD--RIYWIAGGKPKEG-- 367 (460)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEe-eeCCcEEEEcCCCCCHHHHHHHHHhCC--CeEEEecCccCCC--
Confidence 99 8899999999999999999998999999996 346789999988999999999999874 7899999876653
Q ss_pred ccCCChhhhhhhhcceeEE
Q 020059 309 QESNGFEKLIEPLNHHRCV 327 (331)
Q Consensus 309 ~~~~~~~~l~~~l~~~~~~ 327 (331)
+++.|.+.+...+.+
T Consensus 368 ----~~~~L~~~~~~v~~v 382 (460)
T PRK01390 368 ----GIESLAPFFPRIAKA 382 (460)
T ss_pred ----CHHHHHHHHHhhCEE
Confidence 466676655444443
No 15
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.6e-53 Score=410.77 Aligned_cols=307 Identities=30% Similarity=0.395 Sum_probs=240.9
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC--CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP--RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG 79 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~--~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g 79 (331)
.++||+|++++|++|++..|++.|++++++++++++... ++.++|+||||||||||++||+++|+..|.++.+.||+|
T Consensus 79 ~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig 158 (480)
T PRK01438 79 TDLVVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIG 158 (480)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCcc
Confidence 478999999999999999999999999999999877652 245799999999999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceE
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~ 159 (331)
.|+..... ...+.+++|+|+|+++++..+ .++|+++|||||+.||+++|||+|+|+++|.+|++. ..+.+
T Consensus 159 ~~~~~~~~-------~~~~~~~~V~E~ss~~l~~~~-~i~P~iaVITNI~~DHld~lgt~e~ia~~K~~I~~~--~~~~~ 228 (480)
T PRK01438 159 TPVLDAVR-------DPEGYDVLAVELSSFQLHWSP-SVSPHSAAVLNLAPDHLDWHGSMEAYAAAKARIYEG--TTVAC 228 (480)
T ss_pred HHHHHHHh-------cCCCCCEEEEEcChHHhCcCc-ccCCCEEEEecCChhhccccCCHHHHHHHHHHHHhC--CCceE
Confidence 98764221 234678999999999887665 378999999999999999999999999999999985 34689
Q ss_pred EEeCCChhhHHHHhcc----CccEEEeccCCC----cccccccc-cceEEEecCceeEEEE-eecCCCCcHHHHHHHHHH
Q 020059 160 LLPFGNQHLNEAIKGH----RFNLAWIGAFPG----VKIDTEAK-TASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVA 229 (331)
Q Consensus 160 v~n~dd~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~NalaA 229 (331)
|+|.|||....+.... ..++.+|+.... +....+.. ...+.....+..+.+. ..+++++|.||++|+++|
T Consensus 229 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~Na~aA 308 (480)
T PRK01438 229 VYNVADPATEDLVEEADVVEGARAIGFTLGTPGPSQLGVVDGILVDRAFVEDRQTSALELATLEDLRPAAPHNIANALAA 308 (480)
T ss_pred EEeCCcHHHHHHHhhhcccCCceEEEEeCCCCCCCCceEECCEEEEEeeccccccccceeeeHHHcCCCCHHHHHHHHHH
Confidence 9999999887765432 345667764211 11000000 0001111001111111 125899999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCc
Q 020059 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ 309 (331)
Q Consensus 230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~ 309 (331)
+ +++..+|++.+.|+++|++|++++||||++. ..+++.+|||+|||||+|++++|+.++ ++++|+|++.+..
T Consensus 309 i--a~~~~lgi~~~~i~~~L~~~~~~~gR~E~i~-~~~~~~iiDDs~ahNp~a~~aaL~~l~--~i~~I~gG~~~~k--- 380 (480)
T PRK01438 309 A--ALARSFGVPPAAVRDGLRAFRPDAHRIEHVA-DADGVTWVDDSKATNPHAAAASLAAYP--SVVWIAGGLAKGA--- 380 (480)
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEecCccCCHHHHHHHHHhCC--CEEEEEecccCCC---
Confidence 9 8888999999999999999999999999996 356788999989999999999999993 7899997555432
Q ss_pred cCCChhhhhhhhcc-eeEEEe
Q 020059 310 ESNGFEKLIEPLNH-HRCVIT 329 (331)
Q Consensus 310 ~~~~~~~l~~~l~~-~~~~i~ 329 (331)
|+..+++.+.+ .+.+++
T Consensus 381 ---d~~~~~~~l~~~~~~vi~ 398 (480)
T PRK01438 381 ---DFDDLVRRAAGRLRGVVL 398 (480)
T ss_pred ---CHHHHHHHHHhhceEEEE
Confidence 78888888854 455554
No 16
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=3.9e-52 Score=400.74 Aligned_cols=307 Identities=27% Similarity=0.448 Sum_probs=245.4
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||.+++++++||++.+|+++|++++++++.+.+.. + .++|+||||||||||++||+++|+..|+++.+.|++|.|
T Consensus 69 ~d~vv~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~ 146 (450)
T PRK14106 69 VDLVVVSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP 146 (450)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHH
Confidence 46899999999999999999999999999999998876 3 799999999999999999999999999988899999998
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
+...... ..+.+++|+|+|+++..... .++|+++|||||+.||+++|||+|+|+++|.++++..++.+.+++
T Consensus 147 ~~~~~~~-------~~~~~~~v~E~~~~~~~~~~-~~~P~i~VITnI~~dHl~~~gt~e~ia~~K~~i~~~~~~~~~~vl 218 (450)
T PRK14106 147 LIDAVEE-------YGEDDIIVAEVSSFQLETIK-EFKPKVGCILNITPDHLDRHKTMENYIKAKARIFENQRPSDYTVL 218 (450)
T ss_pred HHHHHhc-------CCCCCEEEEEcChhhhcccc-ccCCCEEEEecCCcchhcccCCHHHHHHHHHHHHhCCCCCCEEEE
Confidence 7643221 22568999999987654333 479999999999999999999999999999999998888899999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEE-EeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL-QLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~G~~n~~NalaA~~~a~~~~lg~ 240 (331)
|.||+....+......++.+|+.+.............+.+..++..... ....++++|.||++|+++|+ +++..+|+
T Consensus 219 n~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~h~~~Na~aAi--a~~~~lgi 296 (450)
T PRK14106 219 NYDDPRTRSLAKKAKARVIFFSRKSLLEEGVFVKNGKIVISLGGKEEEVIDIDEIFIPGEHNLENALAAT--AAAYLLGI 296 (450)
T ss_pred eCCcHHHHHHHhhcCceEEEEecCccCcCceEEECCEEEEecCCCcceEEEHHHcCCCCHHHHHHHHHHH--HHHHHcCC
Confidence 9999988877766666778888542111000000112222222211111 11368999999999999999 88999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (331)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~ 320 (331)
+.++++++|++|+++|||||++. ..++..+|+|+|||||+|++++++.++ +++++|+|+|... .+|.++++.
T Consensus 297 ~~~~i~~~L~~~~~~~gR~e~i~-~~~~~~vi~D~~ahNP~s~~~~l~~l~-~~~i~v~g~~~~~------k~~~~~~~~ 368 (450)
T PRK14106 297 SPDVIANTLKTFKGVEHRIEFVA-EINGVKFINDSKGTNPDAAIKALEAYE-TPIVLIAGGYDKG------SDFDEFAKA 368 (450)
T ss_pred CHHHHHHHHHhCCCCCcceEEEe-eECCEEEEeCCCccCHHHHHHHHHhCC-CCeEEEeCCcCCC------CCHHHHHHH
Confidence 99999999999998999999985 345688999978999999999999995 4688899877432 268888887
Q ss_pred hcc-eeEEE
Q 020059 321 LNH-HRCVI 328 (331)
Q Consensus 321 l~~-~~~~i 328 (331)
+.+ .+.++
T Consensus 369 l~~~~~~vi 377 (450)
T PRK14106 369 FKEKVKKLI 377 (450)
T ss_pred HHhhCCEEE
Confidence 753 34443
No 17
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.1e-52 Score=386.35 Aligned_cols=307 Identities=20% Similarity=0.260 Sum_probs=245.5
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee--ecccCc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGNLG 79 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~--~~g~~g 79 (331)
++.||+|+|++++|||+++|+++++|+++|.+++..++ +....|+|+||+||||||+||+++|.+.|+.+. .+|.+.
T Consensus 67 ~~~VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm-~~~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG~~~ 145 (459)
T COG0773 67 ADVVVVSNAIKEDNPEIVAALERGIPVISRAEMLAELM-RFRTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGGILK 145 (459)
T ss_pred CceEEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHH-hCCeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECcccc
Confidence 35699999999999999999999999999999999998 578999999999999999999999999998763 344332
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceE
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~ 159 (331)
..-.... ....+++|+|++++...++ .++|+++|+|||..||+|+|+++|++.+++..+++.+|..|.+
T Consensus 146 ~~g~na~---------~g~~~~fV~EADEsD~sFl--~~~P~~aIvTNid~DH~D~y~~~~~i~~~F~~f~~~vp~~G~~ 214 (459)
T COG0773 146 NFGTNAR---------LGSGDYFVAEADESDSSFL--HYNPRVAIVTNIEFDHLDYYGDLEAIKQAFHHFVRNVPFYGRA 214 (459)
T ss_pred cCCcccc---------cCCCceEEEEecccccccc--cCCCCEEEEeCCCcchhhhhCCHHHHHHHHHHHHHhCCccceE
Confidence 2211111 2233789999998875554 3799999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHhc-cCccEEEeccCC--Ccc---cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059 160 LLPFGNQHLNEAIKG-HRFNLAWIGAFP--GVK---IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (331)
Q Consensus 160 v~n~dd~~~~~~~~~-~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a 233 (331)
|+|.|||.++++... +..++.+||.+. ++. +..+.....|.+...+. .+..+.++++|+||+.|+++|+ |
T Consensus 215 v~~~dd~~l~~l~~~~~~~~v~tyG~~~~ad~~a~ni~~~~~~~~F~V~~~g~--~~~~~~l~~pG~HNvlNAlaai--a 290 (459)
T COG0773 215 VVCGDDPNLRELLSRGCWSPVVTYGFDDEADWRAENIRQDGSGTTFDVLFRGE--ELGEVKLPLPGRHNVLNALAAI--A 290 (459)
T ss_pred EEECCCHHHHHHHhcccCCcEEeecCCCcCcEEEEEeEEeccccEEEEEEcCc--eeEEEEEcCCchhhHHHHHHHH--H
Confidence 999999999997765 566789999875 222 12222333354444443 2345689999999999999999 9
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----C-CcEEEEEcCCCCCCCC
Q 020059 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----G-HKCVILLGGQAKVLNG 308 (331)
Q Consensus 234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~-~~~i~V~G~~~~~g~~ 308 (331)
+|..+|++.+.|+++|++|+++.+|||+.+ +.+++++|||| +|+|..+.++|+.++ . +|+++||---.-.--
T Consensus 291 ~a~~~Gi~~~~i~~aL~~F~GvkRRfe~~g-~~~~~~viDDY-aHHPtEI~aTL~aaR~~~~~~~rIvaifQPHrySRt- 367 (459)
T COG0773 291 VARELGIDPEAIAEALASFQGVKRRFELKG-EVNGVTVIDDY-AHHPTEIKATLAAARQKVPGGKRIVAVFQPHRYSRT- 367 (459)
T ss_pred HHHHcCCCHHHHHHHHHhCCCcceeeEEee-eECCEEEEecC-CCCHHHHHHHHHHHHHhcCCCceEEEEECCCchHhH-
Confidence 999999999999999999999999999887 57889999995 999999999887763 2 688888854321111
Q ss_pred ccCCChhhhhhhhcceeEEEe
Q 020059 309 QESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 309 ~~~~~~~~l~~~l~~~~~~i~ 329 (331)
..-+.+.++.++..+.+++
T Consensus 368 --~~~~~dF~~~l~~AD~v~l 386 (459)
T COG0773 368 --RDLLDDFAKALSDADEVIL 386 (459)
T ss_pred --HHHHHHHHHHHhcCCEEEE
Confidence 1135666777766655553
No 18
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=100.00 E-value=3.1e-52 Score=400.53 Aligned_cols=305 Identities=19% Similarity=0.277 Sum_probs=239.5
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCC--CeeecccCc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGI--EAFVGGNLG 79 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~--~~~~~g~~g 79 (331)
.++||+||+++++||++++|+++|+|++++++++++.+ ++.++|+||||||||||+.||+++|+..|+ ++..+|+++
T Consensus 59 ~d~vV~spgi~~~~p~~~~a~~~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~ 137 (448)
T TIGR01082 59 ADVVVVSAAIKDDNPEIVEAKERGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGLDPTVVVGGLVK 137 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHcCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCCCCeEEECcccc
Confidence 46899999999999999999999999999999999887 356899999999999999999999999997 556788888
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhh-ccCCHHHHHHHHHHhccccCCCce
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLE-RHKTMKNYALTKCHLFSHMVNTKL 158 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~-~~gt~e~~~~~K~~i~~~~~~~~~ 158 (331)
.+...... ...+++|+|+|++++.. ..++|+++|||||++||+| +|+|+|+|+++|.++++.+++++.
T Consensus 138 ~~~~~~~~---------~~~~~~V~E~s~~q~~~--~~~~p~vaVitNI~~DHld~~~~s~e~y~~aK~~i~~~~~~~~~ 206 (448)
T TIGR01082 138 EAGTNARL---------GSGEYLVAEADESDASF--LHLQPNVAIVTNIEPDHLDTYGSSFERLKAAFEKFIHNLPFYGL 206 (448)
T ss_pred cCCccccc---------CCCCEEEEECCCccchH--hhccCCEEEEecCChhhcchhcCCHHHHHHHHHHHHHhCCCCCE
Confidence 77654321 23588999999988755 3479999999999999999 888999999999999998878899
Q ss_pred EEEeCCChhhHHHHhccCccEEEeccCC-C--ccc---ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHH
Q 020059 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFP-G--VKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALS 232 (331)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~ 232 (331)
+|+|.||+....+......++.+|+... . +.. ........|.+...+. ......++++|.||++|+++|+
T Consensus 207 ~V~n~dd~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~l~G~hn~~N~~aA~-- 282 (448)
T TIGR01082 207 AVICADDPVLRELVPKATEQVITYGGSGEDADYRAENIQQSGAEGKFSVRGKGK--LYLEFTLNLPGRHNVLNALAAI-- 282 (448)
T ss_pred EEEECCCHHHHHHHhhcCCCEEEeCCCCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEecCccHhHHHHHHHHH--
Confidence 9999999998877655445677887541 1 111 0001111222221111 1112468899999999999999
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcC--CCCCC
Q 020059 233 VLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QAKVL 306 (331)
Q Consensus 233 a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~--~~~~g 306 (331)
+++..+|++.+.+.++|++|++++||||++. ..+++.+|||+ ||||.++.++++.++ .+|+++|+|+ +.+..
T Consensus 283 a~~~~lgi~~~~i~~~l~~f~~~~~R~e~~~-~~~gv~~i~D~-ahn~~~~~a~~~al~~~~~~~~ii~i~g~~~~~r~k 360 (448)
T TIGR01082 283 AVALELGIDFEAILRALANFQGVKRRFEILG-EFGGVLLIDDY-AHHPTEIKATLKAARQGYPDKRIVVVFQPHRYSRTR 360 (448)
T ss_pred HHHHHcCCCHHHHHHHHHhCCCCCccceEEE-EeCCeEEEEcC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCCCccHH
Confidence 8899999999999999999999999999996 45779999995 999999998877663 3578899985 43321
Q ss_pred CCccCCChhhhhhhhcceeEEEe
Q 020059 307 NGQESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 307 ~~~~~~~~~~l~~~l~~~~~~i~ 329 (331)
+ ++.++++.+++.+.+++
T Consensus 361 ~-----~~~~~~~~l~~~d~v~l 378 (448)
T TIGR01082 361 D-----LFDDFAKVLSDADELIL 378 (448)
T ss_pred H-----HHHHHHHHHHhCCEEEE
Confidence 1 35677877765555443
No 19
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3.3e-52 Score=401.69 Aligned_cols=303 Identities=19% Similarity=0.244 Sum_probs=234.2
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCC--eeecccCc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG 79 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~--~~~~g~~g 79 (331)
.++||.||+++++||++++|+++|+|+++++++++++. ++.++|+||||||||||+.|++++|+..|+. +..+|+++
T Consensus 67 ~d~vv~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~~~~~~~gg~~~ 145 (461)
T PRK00421 67 ADVVVYSSAIPDDNPELVAARELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGLDPTFLIGGILN 145 (461)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCCCCeEEECceec
Confidence 46899999999999999999999999999999999887 3458999999999999999999999999964 44566544
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceE
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLG 159 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~ 159 (331)
.+..... ..+.+++|+|+|+++... ..++|+++|||||++||+|+|||+|+|+++|.+++..+++++.+
T Consensus 146 ~~~~~~~---------~~~~~~~V~E~ss~q~~~--~~~~p~vaViTNI~~DHld~~gt~e~y~~ak~k~~~~~~~~~~~ 214 (461)
T PRK00421 146 AAGTNAR---------LGNSDYFVAEADESDRSF--LKLHPDIAIVTNIDADHLDYYGDFEDLKDAFQEFAHNLPFYGAL 214 (461)
T ss_pred cCCcccc---------cCCCCEEEEECCCccchH--hhcCCCEEEEccCChhhccccCCHHHHHHHHHHHHhcCCCCCEE
Confidence 4322111 234689999999987643 24799999999999999999999999999999999888778899
Q ss_pred EEeCCChhhHHHHhccCccEEEeccCC--Ccccc---cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHH
Q 020059 160 LLPFGNQHLNEAIKGHRFNLAWIGAFP--GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (331)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~ 234 (331)
|+|.||+....+......++.+|+... ++... .......|.+...+.. +....++++|.||++|+++|+ ++
T Consensus 215 V~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~h~~~N~~aA~--a~ 290 (461)
T PRK00421 215 VACGDDPELRELLPRVSRPVITYGFSEDADFRAENIRQDGGGTHFDVLRRGEV--LGDFTLPLPGRHNVLNALAAI--AV 290 (461)
T ss_pred EEECCCHHHHHHHHhcCCCEEEecCCCCCcEEEEEEEEcCCceEEEEEECCce--EEEEEecCCcHHHHHHHHHHH--HH
Confidence 999999998887765556778887532 11110 0001112332211111 112468999999999999999 88
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---C-CcEEEEEc---CCCCCCC
Q 020059 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G-HKCVILLG---GQAKVLN 307 (331)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~-~~~i~V~G---~~~~~g~ 307 (331)
+..+|++++.|.++|++|++++||||++. ..+++.+|+|+ +|||.++.++++.++ + +|+++|+| .+.++
T Consensus 291 ~~~lgv~~~~i~~~l~~f~~~~~R~e~~~-~~~g~~~i~D~-aHnp~~~~a~~~al~~~~~~~~i~~v~gp~~~~r~k-- 366 (461)
T PRK00421 291 ALELGIDDEAIREALATFKGVKRRFEEKG-EVGGVVLIDDY-AHHPTEIKATLKAARQGYPDKRIVAVFQPHRYSRTR-- 366 (461)
T ss_pred HHHcCCCHHHHHHHHHhCCCCCcccEEEE-ecCCcEEEEeC-CCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCccHH--
Confidence 99999999999999999999999999996 45678999995 999999998877763 2 68899998 33333
Q ss_pred CccCCChh-hhhhhhcceeEEEe
Q 020059 308 GQESNGFE-KLIEPLNHHRCVIT 329 (331)
Q Consensus 308 ~~~~~~~~-~l~~~l~~~~~~i~ 329 (331)
|+. .++..+...+.+++
T Consensus 367 -----d~~~~~~~~l~~~d~vi~ 384 (461)
T PRK00421 367 -----DLLDEFAEALSDADEVIL 384 (461)
T ss_pred -----HHHHHHHHHHHHCCEEEE
Confidence 444 46666643444443
No 20
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=100.00 E-value=5.9e-52 Score=398.60 Aligned_cols=284 Identities=21% Similarity=0.260 Sum_probs=222.5
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-----ecc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-----VGG 76 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-----~~g 76 (331)
.++||+||+++++||++++|+++|+|+++|++++++...+..++|+||||||||||+.||+++|+..|+++. +.|
T Consensus 61 ~d~vV~SpgI~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~~~g 140 (448)
T TIGR01081 61 PDLVVIGNAMKRGNPCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGGVPG 140 (448)
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCcccc
Confidence 368999999999999999999999999999999887531234599999999999999999999999998763 567
Q ss_pred cCcccchhhhhhcccCCCCCCCCcEEEEEecccccccc---Cc--eecccEEEEecCChhhhhccCCHHHHHHHHHHhcc
Q 020059 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---NK--YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (331)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~---~~--~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~ 151 (331)
|+|.|... .+.+++|+|+|++++... .. .++|+++|||||++||+|+|+|+|+|+++|.++++
T Consensus 141 n~G~~~~~------------~~~~~~V~E~~s~~~~~~~~l~~~~~~~P~iaVITNI~~DHld~~~t~e~~~~~K~~i~~ 208 (448)
T TIGR01081 141 NFGVSARL------------GESPFFVIEADEYDTAFFDKRSKFVHYRPRTLVLNNLEFDHADIFDDLKAIQRQFHHLVR 208 (448)
T ss_pred cCcccccc------------CCCCEEEEEccCcCccccccccceeecCCCEEEEeCCChHhccccCCHHHHHHHHHHHHH
Confidence 88877531 135889999999876532 11 36999999999999999999999999999999999
Q ss_pred ccCCCceEEEeCCChhhHHHHhc-cCccEEEeccCCCcccc-cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHH
Q 020059 152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKID-TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (331)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA 229 (331)
.+++++.+|+|.||+.+..+... ...++.+|+...++... .......|.+...+.. ...+.++++|.||++|+++|
T Consensus 209 ~~~~~~~~i~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~G~hn~~Na~~A 286 (448)
T TIGR01081 209 TVPGEGLILCPGRDQSLKDTLAKGCWSEQEFFGEQGEWQAEKITADGSHFDVLLDGEK--VGEVKWSLVGRHNMHNALMA 286 (448)
T ss_pred hCCCCCEEEEeCCCHHHHHHHHhccCCCeEEECCCCCEEEEEEecCCcEEEEEECCce--eEEEEecCCcHHHHHHHHHH
Confidence 87777899999999988765432 22345566532211100 0001112222212211 11235789999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCC----CcEEEEEcCCC
Q 020059 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG----HKCVILLGGQA 303 (331)
Q Consensus 230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~----~~~i~V~G~~~ 303 (331)
+ +++..+|++.+.++++|++|++++||||++. ..++..+|+|+ ||||+|++++++.++. +|+++|+|+..
T Consensus 287 ~--a~~~~lgi~~~~i~~~L~~~~~~~~R~e~~~-~~~g~~ii~D~-ahNp~s~~~~l~~l~~~~~~~~ii~I~g~~~ 360 (448)
T TIGR01081 287 I--AAARHVGVAIEDACEALGSFVNAKRRLELKG-EANGITVYDDF-AHHPTAIEATLQGLRQKVGGARILAVLEPRS 360 (448)
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCcceEEEE-ecCCeEEEEeC-CCCHHHHHHHHHHHHHhcCCCeEEEEECCCc
Confidence 9 8899999999999999999999999999995 34678999997 9999999999998852 46799999654
No 21
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=1.4e-51 Score=400.68 Aligned_cols=310 Identities=28% Similarity=0.388 Sum_probs=240.3
Q ss_pred ceeeeeccccccCC----hHHHHHHHcCCeeeeHHHHHHhhCC------CCCcEEEEeCCCChHhHHHHHHHHHHhcCCC
Q 020059 2 WMLWLFLLEFQLKA----TGLACLLQSGKRVMSELDFAAQVIP------RSIKILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 2 ~~~~~~~~~~~~~~----p~~~~a~~~g~~~l~~~~~~~~~~~------~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~ 71 (331)
.++||+||+++++| |++.+|++.++|++++++++++.+. .+.++|+||||||||||++||+++|+..|++
T Consensus 70 ~d~vv~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 70 VDLVALSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred CCEEEECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 46899999999998 9999999999999999999877651 1348999999999999999999999999999
Q ss_pred eeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhcc
Q 020059 72 AFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (331)
Q Consensus 72 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~ 151 (331)
+++.||++.+......+... .....+++|+|+|+++++... .++|+++|||||++||+++|+|+|+|+++|.++++
T Consensus 150 ~~~~Gni~~~~~~~~~~~~~---~~~~~~~~V~E~ss~~l~~~~-~~~p~iaviTNI~~DHld~~gs~e~y~~aK~~i~~ 225 (498)
T PRK02006 150 VAVAGNISPAALDKLMEAID---AGALPDVWVLELSSFQLETTH-TLAPDAATVLNITQDHLDWHGSMAAYAAAKARIFG 225 (498)
T ss_pred EEEECCCCHHHHHHHHHhhc---cCCCCcEEEEEccHHHhCccc-ccCCCEEEEcCCChhhhcccCCHHHHHHHHHHHcC
Confidence 99899988664432211111 011237899999999886544 37999999999999999999999999999999997
Q ss_pred ccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCCC-----cccccccccceEEEecCcee------------------
Q 020059 152 HMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPG-----VKIDTEAKTASFEVPAVGVV------------------ 207 (331)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~------------------ 207 (331)
+++.+|+|.|||.+..+.... ..++.+||.... +..... ....+.+......
T Consensus 226 ---~~~~~Vln~dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (498)
T PRK02006 226 ---PRTVRVLNRDDARVMAMAPPGGAADAVTFGLDEPAADGDYGLLRD-NGMAWLVEAEDRDAADPAPSRRRKKDAAPPP 301 (498)
T ss_pred ---CCCEEEEeCCCHHHHHHhhccCCccEEEEeCCCccccccceEEec-CCeEEEEecCccccccccccccccccccccc
Confidence 478999999999988776543 235678875321 111000 0000111100000
Q ss_pred -E---E-EEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHH
Q 020059 208 -S---Q-LQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEA 282 (331)
Q Consensus 208 -~---~-~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s 282 (331)
+ . ....+++++|.||++|+++|+ +++..+|++.+.++++|++|++++||||++. ..+++.+|||+|+|||+|
T Consensus 302 ~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~~~~lgi~~~~i~~aL~~f~~~~gR~e~~~-~~~g~~~idDs~~tn~~s 378 (498)
T PRK02006 302 DIRLKRLMPADALRIRGLHNAANALAAL--ALARAIGLPAAPLLHGLREYRGEPHRVELVA-TIDGVDYYDDSKGTNVGA 378 (498)
T ss_pred ccchhceeeHhhcCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCceEEEE-EECCEEEEEcCCCCCHHH
Confidence 0 1 111368999999999999999 8999999999999999999999999999996 357889999999999999
Q ss_pred HHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhhc-ceeEEEe
Q 020059 283 TCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN-HHRCVIT 329 (331)
Q Consensus 283 ~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~-~~~~~i~ 329 (331)
+.++++.++ +|+++|+|+|.+.+ +|+++.+.+. ..+.+|+
T Consensus 379 ~~~al~~~~-~~ii~IlGg~~~~~------~~~~~~~~l~~~~~~vi~ 419 (498)
T PRK02006 379 TVAALDGLA-QRVVLIAGGDGKGQ------DFSPLAAPVARHARAVVL 419 (498)
T ss_pred HHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHHHHHHhCCEEEE
Confidence 999999984 68999999987654 6778887774 3455543
No 22
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=100.00 E-value=1.6e-52 Score=402.44 Aligned_cols=307 Identities=19% Similarity=0.263 Sum_probs=229.0
Q ss_pred eeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----Cc
Q 020059 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (331)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g 79 (331)
.+|+++++++++|.+.- ++....+..++..++.. .+.++|+||||||||||++||+++|+..|.++.+.|+ +|
T Consensus 64 ~vv~~~~~~~~~p~i~v--~d~~~al~~la~~~~~~-~~~~vI~VTGSnGKTTT~~ml~~iL~~~g~~~~t~gn~n~~~G 140 (453)
T PRK10773 64 ALLVSRPLDIDLPQLVV--KDTRLAFGQLAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILRQCGNTLYTAGNLNNDIG 140 (453)
T ss_pred EEEEecCcCCCCCEEEE--CCHHHHHHHHHHHHHhc-CCCCEEEEcCCCchHHHHHHHHHHHHhcCcccccCccccCCcc
Confidence 45666666556666541 11112344444444332 2468999999999999999999999999988877777 45
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccc---cccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~---~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~ 156 (331)
.|.+... ..++++++|+|+|+. .++.....++|+++|||||++||+|+|||+|+|+++|.++++.++++
T Consensus 141 ~~~~~~~--------~~~~~~~~V~E~g~~~~gei~~~~~~~~p~iaViTNI~~dHld~~gs~e~~~~aK~~l~~~~~~~ 212 (453)
T PRK10773 141 VPLTLLR--------LTPEHDYAVIELGANHQGEIAYTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (453)
T ss_pred cccHHhc--------CCCCCcEEEEEcCCCCcchhHHhcCccCCCEEEEeCCCHHHHhhcCCHHHHHHHHHHHHcccCCC
Confidence 5544322 135679999999962 33333445899999999999999999999999999999999988888
Q ss_pred ceEEEeCCChhhHHHHhccCc-cEEEeccCC--Ccccc-----cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHH
Q 020059 157 KLGLLPFGNQHLNEAIKGHRF-NLAWIGAFP--GVKID-----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAV 228 (331)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~-~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~Nala 228 (331)
+.+|+|.|||....+...... ++.+||... +.++. .......|.+...+..+ .+.++++|.||++|+++
T Consensus 213 g~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~i~~~~~~~~f~~~~~~~~~---~~~l~l~G~hnv~Nala 289 (453)
T PRK10773 213 GIAIMNADSNDWLNWQSVIGSKTVWRFSPNAANSVDFTATNIHVTSHGTEFTLHTPTGSV---DVLLPLPGRHNIANALA 289 (453)
T ss_pred CEEEEECCcHhHHHHHHHhcCCcEEEEeCCCCCcCcEEEEEEEEeCCeeEEEEEecCceE---EEEecCCcHhHHHHHHH
Confidence 999999999987766544332 456777532 11111 01111223322211111 24789999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCCC
Q 020059 229 AALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVL 306 (331)
Q Consensus 229 A~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~g 306 (331)
|+ +++..+|++++.|+++|++|++++||||.+. ..++..||||+|||||+|++++|+.++ ++|+++|+|+|.++|
T Consensus 290 Ai--a~a~~lGi~~~~i~~~L~~~~~~~gR~e~v~-~~~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG 366 (453)
T PRK10773 290 AA--ALAMSVGATLDAVKAGLANLKAVPGRLFPIQ-LAEGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELG 366 (453)
T ss_pred HH--HHHHHcCCCHHHHHHHHHhCCCCCCceeEEE-CCCCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence 99 8999999999999999999999999999985 346789999999999999999998874 357899999999999
Q ss_pred CCccCCChhhhhhhhcc--eeEEE
Q 020059 307 NGQESNGFEKLIEPLNH--HRCVI 328 (331)
Q Consensus 307 ~~~~~~~~~~l~~~l~~--~~~~i 328 (331)
+.++.. |+++.+.+.. .+.++
T Consensus 367 ~~~~~~-h~~~~~~~~~~~~d~v~ 389 (453)
T PRK10773 367 AESEAC-HRQVGEAAKAAGIDKVL 389 (453)
T ss_pred hHHHHH-HHHHHHHHHHcCCCEEE
Confidence 988655 8899888853 34444
No 23
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=100.00 E-value=2.1e-50 Score=384.46 Aligned_cols=272 Identities=23% Similarity=0.292 Sum_probs=210.4
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--cc
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--IP 114 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~-~~~~~--~~ 114 (331)
+.++|+||||||||||++||+++|+..|+.+++.|+ +|.|.+... ...+++++|+|+| ++..+ ..
T Consensus 73 ~~~vI~VTGTnGKTTt~~ll~~iL~~~g~~~~t~gn~n~~ig~p~~~l~--------~~~~~~~~VlE~g~s~~g~~~~~ 144 (417)
T TIGR01143 73 SGKVIGITGSSGKTTTKEMLAAILSHKYKVFATPGNFNNEIGLPLTLLR--------APGDHDYAVLEMGASHPGEIAYL 144 (417)
T ss_pred CCCEEEEcCCCchhHHHHHHHHHHhccCcEecCCCcCCCccchhHHHhc--------CCCCCeEEEEEeCCCCCCcHHHH
Confidence 568999999999999999999999999987777777 555554321 2557899999998 43332 12
Q ss_pred CceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccC-ccEEEeccCC-Cccc--
Q 020059 115 NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR-FNLAWIGAFP-GVKI-- 190 (331)
Q Consensus 115 ~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~-~~~~~~~~~~-~~~~-- 190 (331)
...++|+++|||||++||+|+|||+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||... ++..
T Consensus 145 ~~~~~p~vaviTNi~~dHld~~gs~e~~~~aK~~l~~~~~~~~~~vln~Dd~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 224 (417)
T TIGR01143 145 AEIAKPDIAVITNIGPAHLEGFGSLEGIAEAKGEILQGLKENGIAVINADDPAFAKFAKRLPNKAILSFGFEGGDFSAAD 224 (417)
T ss_pred hCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHcccCCCCEEEEeCCcHHHHHHHHhccCCcEEEECCCCCcEEEEE
Confidence 23479999999999999999999999999999999998888899999999998877765443 4567887532 1110
Q ss_pred -cccccc-ceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCc
Q 020059 191 -DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG 268 (331)
Q Consensus 191 -~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~ 268 (331)
...... ..|.+...+... .+.++++|.||++|+++|+ +++..+|+++++|+++|++|++++|||| +. ..++
T Consensus 225 i~~~~~~~~~~~~~~~~~~~---~~~~~l~G~hn~~N~laAi--a~~~~lGi~~~~i~~~l~~~~~~~gR~e-~~-~~~~ 297 (417)
T TIGR01143 225 ISYSALGSTGFTLVAPGGEF---EVSLPLLGRHNVMNALAAA--ALALELGIPLEEIAEGLAELKLVKGRFE-IQ-TKNG 297 (417)
T ss_pred EEEcCCCCEEEEEEeCCceE---EEEccCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCcee-EE-cCCC
Confidence 001111 223332222112 2468999999999999999 8999999999999999999999999999 43 4678
Q ss_pred EEEEEcCCCCCHHHHHHHHhccCC--CcEEEEEcCCCCCCCCccCCChhhhhhhhcc-e-eEEEe
Q 020059 269 VTWVDDSKATNLEATCTGLMDLKG--HKCVILLGGQAKVLNGQESNGFEKLIEPLNH-H-RCVIT 329 (331)
Q Consensus 269 ~~iidD~~a~np~s~~~al~~~~~--~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~-~~~i~ 329 (331)
..+|||+|||||+|++++|+.++. +|+++|+|+|.|+|+++.. .++.+.+.+.+ . +.+|+
T Consensus 298 ~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~~-~~~~l~~~~~~~~~d~vi~ 361 (417)
T TIGR01143 298 LTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEE-LHAEVGRYANSLGIDLVFL 361 (417)
T ss_pred cEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHHH-HHHHHHHHHHHcCCCEEEE
Confidence 999999889999999999998852 5899999999999987743 36677777743 2 45543
No 24
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=4.6e-49 Score=380.80 Aligned_cols=275 Identities=19% Similarity=0.188 Sum_probs=211.8
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC----cccchhhhhhcccCCCCCCCCcEEEEEec-ccccc--c
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL----GNPLSEAAFHCIALPSSKPKFQVAVVEVS-SYQME--I 113 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~----g~~~~~~~~~~~~~~~~~~~~~~~VlE~~-~~~~~--~ 113 (331)
.+.++|+||||||||||++||+++|+..|.++.+.|++ |.|.+... ...+++++|+|+| ++..+ .
T Consensus 106 ~~~~vIgVTGS~GKTTT~~ml~~iL~~~g~~~~~~g~~n~~iG~p~~l~~--------~~~~~~~~V~E~g~s~~~e~~~ 177 (479)
T PRK14093 106 LEAKVIAVTGSVGKTSTKEALRGVLGAQGETHASVASFNNHWGVPLSLAR--------CPADARFAVFEIGMNHAGEIEP 177 (479)
T ss_pred cCCCEEEEcCCCCccHHHHHHHHHHHhcCCccCCCccCCCccchhHHHHc--------CCCCCcEEEEEeCCCCCchHHH
Confidence 36789999999999999999999999999888777764 44443221 1356789999999 45444 2
Q ss_pred cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccC----ccEEEeccCCCcc
Q 020059 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR----FNLAWIGAFPGVK 189 (331)
Q Consensus 114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~----~~~~~~~~~~~~~ 189 (331)
....++|+++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||....+..... .++++||.....+
T Consensus 178 ~~~~~~PdiaViTNI~~DHLd~~gt~e~~~~aK~~l~~~~~~~g~~VlN~Dd~~~~~l~~~~~~~~~~~vi~~g~~~~~~ 257 (479)
T PRK14093 178 LVKMVRPHVAIITTVEPVHLEFFSGIEAIADAKAEIFTGLEPGGAAVLNRDNPQFDRLAASARAAGIARIVSFGADEKAD 257 (479)
T ss_pred HhcccCCCEEEEcCCCHHHHhhcCCHHHHHHHHHHHHccCCCCCEEEEeCCcHHHHHHHHHhhhccCCcEEEEeCCCCcc
Confidence 233579999999999999999999999999999999998888899999999999887754322 2567888542211
Q ss_pred cc-----cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEee
Q 020059 190 ID-----TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHR 264 (331)
Q Consensus 190 ~~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~ 264 (331)
+. .......+.+...+... .+.++++|.||++|+++|+ +++..+|++.++|+++|++|++++||+|.+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~l~~~~~~~gR~~~~r~ 332 (479)
T PRK14093 258 ARLLDVALHADCSAVHADILGHDV---TYKLGMPGRHIAMNSLAVL--AAAELAGADLALAALALSQVQPAAGRGVRHTL 332 (479)
T ss_pred EEEEEEEEcCCceEEEEEECCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCcCCcceEEEe
Confidence 11 00111223332222222 2478999999999999999 89999999999999999999999999998742
Q ss_pred e--cCcEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEEcCCCCCCCCccCCChhhhhhhhc--ceeEEEe
Q 020059 265 D--IQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN--HHRCVIT 329 (331)
Q Consensus 265 ~--~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~--~~~~~i~ 329 (331)
+ .++..||||+|||||+|++++|+.++ ++|+|+|||+|.++|..+... |+++.+.+. ..+.+++
T Consensus 333 ~~~~~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~-h~~~~~~~~~~~~d~v~~ 406 (479)
T PRK14093 333 EVGGGEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPEL-HRGLAEAIRANAIDLVFC 406 (479)
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHH-HHHHHHHHHHcCCCEEEE
Confidence 2 34589999999999999999998763 358999999999999887544 888988885 3354443
No 25
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.3e-48 Score=368.46 Aligned_cols=269 Identities=24% Similarity=0.331 Sum_probs=221.4
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEecc---ccccc
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSS---YQMEI 113 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~---~~~~~ 113 (331)
.+.++|+||||+|||||+.|++++|+..|....+.|| +|.|++.... ..++|++|+|+|. +.+..
T Consensus 101 ~~~kvIaITGS~GKTTTKe~la~iL~~~~~v~~t~gn~Nn~iGlPltll~~--------~~~~e~~VlEmG~~~~GeI~~ 172 (451)
T COG0770 101 FNAKVIAITGSNGKTTTKEMLAAILSTKGKVHATPGNFNNEIGLPLTLLRL--------PADTEYAVLEMGMNHPGEIAE 172 (451)
T ss_pred cCCcEEEEeCCCCcHHHHHHHHHHHhhcCeEecCCCccCccccchhHHHhC--------CCcccEEEEEcCCCCCCcHHH
Confidence 4789999999999999999999999999988877777 5777776654 4568999999995 35555
Q ss_pred cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCC--Ccc-
Q 020059 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFP--GVK- 189 (331)
Q Consensus 114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~--~~~- 189 (331)
+..+.+|+++|||||+.+|+++|||.|.++++|.+|+..+++++.+|+|.|++......... ..++++||... ++.
T Consensus 173 l~~i~~P~iavItnIg~aHle~fgs~e~Ia~aK~Ei~~~~~~~g~ai~n~d~~~~~~~~~~~~~~~v~~fg~~~~~d~~~ 252 (451)
T COG0770 173 LSEIARPDIAVITNIGEAHLEGFGSREGIAEAKAEILAGLRPEGIAILNADNPLLKNWAAKIGNAKVLSFGLNNGGDFRA 252 (451)
T ss_pred HhcccCCCEEEEcChhHHHHHhcCCHHHHHHHHHHHHhccCCCcEEEEECccHHHHHHHhhcCCCcEEEEcCCCCCceee
Confidence 66668999999999999999999999999999999999999999999999999977766553 45788888541 111
Q ss_pred --cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecC
Q 020059 190 --IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQ 267 (331)
Q Consensus 190 --~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~ 267 (331)
+..+.....|.+...+.+.. +.+|++|+||+.|+++|+ ++++.+|++.++|+++|+.+++++||+|.+. ..+
T Consensus 253 ~~i~~~~~~~~f~~~~~~~~~~---~~l~~~G~hn~~NalaA~--a~a~~lG~~~e~i~~~L~~~~~~~gR~~~~~-~~~ 326 (451)
T COG0770 253 TNIHLDEEGSSFTLDIEGGEAE---FELPLPGRHNVTNALAAA--ALALELGLDLEEIAAGLKELKPVKGRLEVIL-LAN 326 (451)
T ss_pred EEEEEcCCceEEEEEecCceEE---EEecCCcHhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCccceeEe-cCC
Confidence 11122224444443333332 579999999999999999 8999999999999999999999999999543 578
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcce
Q 020059 268 GVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNHH 324 (331)
Q Consensus 268 ~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~ 324 (331)
+.++|||+||.||+||.++++.+ +.++.|+|+|+|.|+|++++.. |.++.+.+...
T Consensus 327 g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~-H~~v~~~~~~~ 385 (451)
T COG0770 327 GKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEEL-HEEVGEYAVEA 385 (451)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHH-HHHHHHHHHhc
Confidence 89999999999999999998876 3444499999999999887555 99999998653
No 26
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=100.00 E-value=3.1e-48 Score=396.16 Aligned_cols=301 Identities=15% Similarity=0.184 Sum_probs=229.1
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCC--eeecccCc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE--AFVGGNLG 79 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~--~~~~g~~g 79 (331)
.++||+||+++++||++++|+++|+|+++++++++++. +..++|+||||||||||++||+++|+..|+. +.++|++|
T Consensus 64 ~d~vV~SpgI~~~~p~~~~a~~~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~~~~~~~gG~~g 142 (809)
T PRK14573 64 DAVVVYSSSISKDNVEYLSAKSRGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKKDPSYAIGGLNQ 142 (809)
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCeEEECCccc
Confidence 36899999999999999999999999999999999887 3558999999999999999999999999975 45788888
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCce
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKL 158 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~ 158 (331)
.|.... ..+.+++|+|+|+++ ... ..++|+++|||||++||+|+| +|+|+|+++|..+++.+++++.
T Consensus 143 ~~~~~~----------~~~~d~~V~E~ss~~-~~~-~~~~P~iaViTNI~~DHLd~~~gs~e~y~~ak~~~~~~~~~~~~ 210 (809)
T PRK14573 143 EGLNGY----------SGSSEYFVAEADESD-GSL-KHYTPEFSVITNIDNEHLSNFEGDRELLLASIQDFARKVQQINK 210 (809)
T ss_pred cccccc----------cCCCCEEEEECCCCc-chh-heeecCEEEEeCCChhhhhhhcCCHHHHHHHHHHHHhcCCCCCE
Confidence 765532 123689999999986 322 258999999999999999988 7999999999999887777889
Q ss_pred EEEeCCChhhHHHHhccCccEEEeccCCCccc-----ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059 159 GLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (331)
Q Consensus 159 ~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a 233 (331)
+|+|.||+...... +..+|+......+ ..+.....|.+...+. .+....++++|.||++|+++|+ +
T Consensus 211 ~V~N~Dd~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~f~l~~~~~--~~~~~~l~l~G~hn~~Na~aAi--a 281 (809)
T PRK14573 211 CFYNGDCPRLKGCL-----QGHSYGFSSSCDLHILSYYQEGWRSYFSAKFLGV--VYQDIELNLVGMHNVANAAAAM--G 281 (809)
T ss_pred EEEeCCCHHHHhhc-----ccEEEccCCCCcEEEEEEEecCCeEEEEEEECCc--eEEEEEeccccHhhHHHHHHHH--H
Confidence 99999999765422 1234553211111 0011111233222221 1123468899999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCc
Q 020059 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQ 309 (331)
Q Consensus 234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~ 309 (331)
++..+|++.+.|+++|++|++++||||++. ..+++.+|+| |||||++++++++.++ .+|+++||+......-
T Consensus 282 ~~~~lgi~~~~i~~~L~~f~~~~~R~e~~~-~~~~~~~i~D-~ahnP~~~~a~l~~l~~~~~~~rli~vf~~~~~~~~-- 357 (809)
T PRK14573 282 IALTLGIDEGAIRNALKGFSGVQRRLERKN-SSETFLFLED-YAHHPSEISCTLRAVRDAVGLRRIIAICQPHRFSRL-- 357 (809)
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEe-ccCCcEEEEE-CCCCHHHHHHHHHHHHhhcCCCEEEEEEcCCcchhH--
Confidence 899999999999999999999999999996 3567889999 5999999999988873 3678899964433321
Q ss_pred cCCChhhhhhhhcceeEEEe
Q 020059 310 ESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 310 ~~~~~~~l~~~l~~~~~~i~ 329 (331)
..++.+++..+...+.+++
T Consensus 358 -~~~~~~~~~~l~~~d~vil 376 (809)
T PRK14573 358 -RECLDSFPSAFQDADEVIL 376 (809)
T ss_pred -HHHHHHHHHHHHHCCEEEE
Confidence 1134444455554555544
No 27
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=5.8e-48 Score=363.56 Aligned_cols=269 Identities=25% Similarity=0.361 Sum_probs=216.7
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPL 82 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~ 82 (331)
++||+||+++++||++++|++ ++++++++.+.. .++|+||||||||||++||+++|+..|.. .+||+|.|+
T Consensus 56 d~vv~sp~i~~~~~~~~~a~~----i~~~~e~~~~~~---~~~i~ITGT~GKTTTt~ml~~iL~~~g~~--~~gniG~p~ 126 (401)
T PRK03815 56 DLEIPSPGIPPSHPLIQKAKN----LISEYDYFYDVM---PFSIWISGTNGKTTTTQMTTHLLEDFGAV--SGGNIGTPL 126 (401)
T ss_pred CEEEECCCCCCCCHHHHHHHH----HhhHHHHHHHhc---CCEEEEECCCcHHHHHHHHHHHHHHCCCc--EEEEecHhH
Confidence 689999999999999999988 689999988765 25999999999999999999999999843 578999987
Q ss_pred hhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEe
Q 020059 83 SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (331)
.. . ..+.+++|+|+|+++++... .++|+++|||||++||+|+|+|+|+|.++|.+|++.+++++.+|+|
T Consensus 127 ~~--~--------~~~~~~~V~E~ss~~~~~~~-~~~p~iavitNi~~dHld~~~s~e~~~~~k~~i~~~~~~~~~~v~n 195 (401)
T PRK03815 127 AE--L--------DKNAKIWVLETSSFTLHYTN-KAKPNIYLLLPITPDHLSWHGSFENYVKAKLKPLKRMNEGDVAILP 195 (401)
T ss_pred Hh--c--------CCCCCEEEEECChHHhhCCc-cCCCcEEEEcCCcccchhhcCCHHHHHHHHHHHHhCCCcCCEEEEe
Confidence 65 2 23458999999988765544 3799999999999999999999999999999999999889999999
Q ss_pred CCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCH
Q 020059 163 FGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDV 242 (331)
Q Consensus 163 ~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~ 242 (331)
.||+... ...++++||...+. . ..+.+.. ..+.+.+. |++|+++|+ +++..+|+
T Consensus 196 ~dd~~~~-----~~~~~~~fg~~~~~------~-~~~~~~~---------~~~~~~~~-~~~NalaA~--a~a~~~G~-- 249 (401)
T PRK03815 196 KKFKNTP-----TKAQKIFYEDEEDL------A-EKFGIDS---------EKINFKGP-FLLDALLAL--AVYKILFD-- 249 (401)
T ss_pred ccccccc-----cCCcEEEEecCCcc------c-cceeEeh---------HhcCCchH-HHHHHHHHH--HHHHHhCc--
Confidence 9998642 12356677632110 0 0111111 12334455 499999999 89999994
Q ss_pred HHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhhhc
Q 020059 243 EALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (331)
Q Consensus 243 ~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~ 322 (331)
+.+.++|++|+++++|||++. ..+++.+|||+|++||+|+.++|+.++.+|+++|+|+..+. .+|.++.+.++
T Consensus 250 ~~~~~~L~~f~~~~~R~e~~~-~~~gv~~idDs~~tn~~a~~~al~~~~~~~ii~IlGG~~k~------~~~~~l~~~~~ 322 (401)
T PRK03815 250 ELDYERLNAFKIGKHKLEEFR-DKQGRLWVDDSKATNVDATLQALKRYKDKKIHLILGGDDKG------VDLTPLFEFMK 322 (401)
T ss_pred HHHHHHHHhCCCCCceEEEEE-EECCEEEEECCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHHHH
Confidence 556678999999999999996 46889999999999999999999999656789999975443 26788888885
Q ss_pred ce
Q 020059 323 HH 324 (331)
Q Consensus 323 ~~ 324 (331)
..
T Consensus 323 ~~ 324 (401)
T PRK03815 323 NL 324 (401)
T ss_pred hh
Confidence 43
No 28
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=100.00 E-value=2e-46 Score=361.05 Aligned_cols=261 Identities=25% Similarity=0.310 Sum_probs=199.7
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCCC-----------CCCCCcEEEEEeccc
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALPS-----------SKPKFQVAVVEVSSY 109 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~~-----------~~~~~~~~VlE~~~~ 109 (331)
+.++|+||||||||||++||+++|++.|+++++.||++.++.....+. .+++. .+.+++++|+|+|++
T Consensus 94 ~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~gn~~~~i~~~~~~~~~~t~~~~~~~~~l~~~~~~~~~~~VlE~~s~ 173 (460)
T PRK00139 94 KLKLIGVTGTNGKTTTAYLLAQILRLLGEKTALIGTLGNGIGGELIPSGLTTPDALDLQRLLAELVDAGVTYAAMEVSSH 173 (460)
T ss_pred ccEEEEEECCCCchhHHHHHHHHHHHcCCCEEEECCcccccCCeecccCCCCcCHHHHHHHHHHHHHCCCCEEEEEcchh
Confidence 678999999999999999999999999999999999887765422110 11110 145789999999987
Q ss_pred cccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccC-CC
Q 020059 110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAF-PG 187 (331)
Q Consensus 110 ~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~-~~ 187 (331)
+++..+. .++|+++|||||+.||+++|||+|+|+++|.+|++.. .+.+|+|.||+....+... ..+|+.. ..
T Consensus 174 ~~~~~~l~~~~p~iaViTnI~~dHl~~~gt~e~i~~~K~~i~~~~--~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~ 247 (460)
T PRK00139 174 ALDQGRVDGLKFDVAVFTNLSRDHLDYHGTMEDYLAAKARLFSEL--GLAAVINADDEVGRRLLAL----PDAYAVSMAG 247 (460)
T ss_pred hHhhchhcCCcCCEEEEcCCCcccCCcCCCHHHHHHHHHHHHhcC--CCeEEEEcCcHhHHHHHhh----cEEEEecCCC
Confidence 7643221 2789999999999999999999999999999999864 2489999999988766542 3445532 11
Q ss_pred cccccccccceEEEecCceeEEEE-eecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeec
Q 020059 188 VKIDTEAKTASFEVPAVGVVSQLQ-LHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI 266 (331)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~ 266 (331)
. +.....+.....+..+.+. .+.++++|+||++|+++|+ +++..+|+++++|+++|++|++++||||++. ..
T Consensus 248 ~----~~~~~~~~~~~~~~~~~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~ 320 (460)
T PRK00139 248 A----DLRATDVEYTDSGQTFTLVTEVESPLIGRFNVSNLLAAL--AALLALGVPLEDALAALAKLQGVPGRMERVD-AG 320 (460)
T ss_pred C----cEEEEEEEEecCceEEEEEEEEEecccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEE-cC
Confidence 1 1111122222233334332 3578999999999999999 8999999999999999999999999999995 24
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059 267 QGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (331)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l 321 (331)
++..+|+| |||||+|++++++.+. ++|+++|+|+..++.. ++++++..+
T Consensus 321 ~~~~iI~D-yahNP~s~~aal~~l~~~~~~r~i~VlG~g~~k~~-----~~~~~~~~~ 372 (460)
T PRK00139 321 QGPLVIVD-YAHTPDALEKVLEALRPHAKGRLICVFGCGGDRDK-----GKRPLMGAI 372 (460)
T ss_pred CCCEEEEE-CCCCHHHHHHHHHHHHhhcCCcEEEEECCCCCCch-----hhhHHHHHH
Confidence 67899999 6999999999999885 3689999998555532 566776665
No 29
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=100.00 E-value=4.9e-46 Score=354.45 Aligned_cols=279 Identities=25% Similarity=0.386 Sum_probs=215.4
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCC-CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIP-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~-~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
+++|.+++++++||.+++|+++|++++++.+.+.+... .+.++|+||||||||||++||+++|+..|.++.+.||+|.|
T Consensus 61 dlvV~s~gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p 140 (418)
T PRK00683 61 DLVVRSPGIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIP 140 (418)
T ss_pred CEEEECCCCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHH
Confidence 68999999999999999999999999999988665421 25689999999999999999999999999999999999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGL 160 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v 160 (331)
+... ..+.+++|+|+|++++..... ...|+++|||||++||+|+|+|+|+|+++|.+++..+..
T Consensus 141 ~l~~----------~~~~~~~V~E~~s~~~~~~~~~~~~~~iavitNi~~dHld~~~s~e~y~~aK~~i~~~~~~----- 205 (418)
T PRK00683 141 ILDG----------MQQPGVRVVEISSFQLADQEKSYPVLSGGMILNISDNHLDYHGNLSAYFQAKQNIAKCLRN----- 205 (418)
T ss_pred HHHH----------hhcCCEEEEEechhhhCcCcccCCCccEEEEecCChhHhccCCCHHHHHHHHHHHHHhhhC-----
Confidence 7332 123578999999998765333 223489999999999999999999999999999975432
Q ss_pred EeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH-cC
Q 020059 161 LPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD-IG 239 (331)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~-lg 239 (331)
.|+.... ...+|+.. . ....... +.....+ ..++++|.||++|+++|+ +++.. +|
T Consensus 206 --~~~~~~~--------~~~~~~~~--~--~~~~~~~-~~~~~~~-------~~~~~~g~hn~~Na~aA~--a~~~~l~g 261 (418)
T PRK00683 206 --PDDLWVG--------DERSYGHS--Y--LEYVQEI-MRLLDKG-------SALKPLYLHDRYNYCAAY--ALANEVFP 261 (418)
T ss_pred --ccccccc--------ccCCcCce--e--ecCcchh-hhhhccc-------cccCCCccchHHHHHHHH--HHHHHhcC
Confidence 2222110 01122211 0 0000000 0000011 246789999999999999 88888 69
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhh
Q 020059 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIE 319 (331)
Q Consensus 240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~ 319 (331)
++.++++++|++|++++||||++. ..++..+|||+||+||+|+.++++.++ +|+++|+|+|.+.+ ||.++.+
T Consensus 262 ~~~~~i~~~l~~~~~~~~R~e~v~-~~~g~~~i~Ds~~t~~~s~~~al~~~~-~~~i~vlG~~~~~~------d~~~l~~ 333 (418)
T PRK00683 262 ISEESFLEAVATFEKPPHRMEYLG-EKDGVHYINDSKATTVSAVEKALLAVG-NQVIVILGGRNKGC------DFSSLLP 333 (418)
T ss_pred CCHHHHHHHHHhCCCCCCceEEEe-ecCCeEEEEcCCCCCHHHHHHHHHhCC-CCEEEEEcCCCCCC------CHHHHHH
Confidence 999999999999999999999996 357899999999999999999999874 58999999988876 4667777
Q ss_pred hhcc-eeEEE
Q 020059 320 PLNH-HRCVI 328 (331)
Q Consensus 320 ~l~~-~~~~i 328 (331)
.+.+ .+.++
T Consensus 334 ~~~~~~~~v~ 343 (418)
T PRK00683 334 VLRQTAKHVV 343 (418)
T ss_pred HHHHhCCEEE
Confidence 7754 34444
No 30
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=7.7e-46 Score=385.79 Aligned_cols=273 Identities=19% Similarity=0.242 Sum_probs=208.9
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhc---CCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEeccc---cc
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHL---GIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY---QM 111 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~---g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~---~~ 111 (331)
+.++|+||||||||||++||+++|+.. +....+.|+ +|.|.+... ...+.+++|+|+|++ ++
T Consensus 602 ~~~vI~VTGTnGKTTT~~ml~~iL~~~~~~~~~~~t~gn~n~~~g~~~~l~~--------~~~~~~~~VlE~s~~~~g~~ 673 (958)
T PRK11929 602 SLPVVAITGSNGKTTTKEMIAAILAAWQGEDRVLATEGNFNNEIGVPLTLLR--------LRAQHRAAVFELGMNHPGEI 673 (958)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhcCCCCcEEccCcccCCCcchHHHHhc--------CCCCCcEEEEEeCCCCCccH
Confidence 568999999999999999999999998 444556666 455544322 145678999999975 44
Q ss_pred cccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc-CccEEEeccCCCccc
Q 020059 112 EIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH-RFNLAWIGAFPGVKI 190 (331)
Q Consensus 112 ~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~-~~~~~~~~~~~~~~~ 190 (331)
+.....++|+++|||||++||+|+|+|+|+|+++|.++++.+++++.+|+|.||+....+.... ..++.+||......+
T Consensus 674 ~~~~~~~~pdiaViTNI~~dHLd~~~s~e~y~~aK~~i~~~~~~~~~~Vln~Dd~~~~~~~~~~~~~~~~~fg~~~~~~~ 753 (958)
T PRK11929 674 AYLAAIAAPTVALVTNAQREHQEFMHSVEAVARAKGEIIAALPEDGVAVVNGDDPYTAIWAKLAGARRVLRFGLQPGADV 753 (958)
T ss_pred HHHhCccCCCEEEEcCCcHHHhhhcCCHHHHHHHHHHHHccCCCCCEEEEECCcHHHHHHHHhhcCCcEEEEeCCCCcce
Confidence 4443446999999999999999999999999999999999888889999999999987765433 235677875321111
Q ss_pred c-----cc-----cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 020059 191 D-----TE-----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (331)
Q Consensus 191 ~-----~~-----~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e 260 (331)
. .+ .....+.+...+... .+.++++|.||++|+++|+ +++..+|++.++++++|++|+++|||||
T Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e 828 (958)
T PRK11929 754 YAEKIAKDISVGEAGGTRCQVVTPAGSA---EVYLPLIGEHNLRNALAAI--ACALAAGASLKQIRAGLERFQPVAGRMQ 828 (958)
T ss_pred EeeecccceeecCCCceEEEEEECCceE---EEEeCCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHhhCCCCCCCce
Confidence 0 00 011122222111111 2468999999999999999 8999999999999999999999999999
Q ss_pred EEeeecCcEEEEEcCCCCCHHHHHHHHhccCC---CcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEEe
Q 020059 261 IVHRDIQGVTWVDDSKATNLEATCTGLMDLKG---HKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVIT 329 (331)
Q Consensus 261 ~~~~~~~~~~iidD~~a~np~s~~~al~~~~~---~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i~ 329 (331)
++. ..++..+|||+|||||+|++++|+.++. +|+++|+|+|.++|+++.+. |+++.+.+.+ .+.+++
T Consensus 829 ~~~-~~~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~-h~~~g~~~~~~~~~~vi~ 900 (958)
T PRK11929 829 RRR-LSCGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAM-HREVGKYARQLGIDALIT 900 (958)
T ss_pred EEE-cCCCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHH-HHHHHHHHHHcCCCEEEE
Confidence 996 3578899999889999999999998852 68999999999999877433 5666666633 355554
No 31
>TIGR01085 murE UDP-N-acetylmuramyl-tripeptide synthetase. A close homolog, scoring just below the trusted cutoff, is found (with introns) in Arabidopsis thaliana. Its role is unknown.
Probab=100.00 E-value=2.5e-45 Score=354.28 Aligned_cols=275 Identities=24% Similarity=0.327 Sum_probs=200.8
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhh---h-cccCC-----------CCCCCCcEEEEEe
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAF---H-CIALP-----------SSKPKFQVAVVEV 106 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~---~-~~~~~-----------~~~~~~~~~VlE~ 106 (331)
+.++|+||||||||||++||+++|+..|+++++.|+.|.+...... . ..+++ ..+.+.+++|+|+
T Consensus 84 ~~~vI~ITGTnGKTTT~~ml~~iL~~~g~~~~~~~t~g~~~~~n~~ig~p~~~tt~~~~~~~~~l~~~~~~~~~~~VlE~ 163 (464)
T TIGR01085 84 KLKVIGVTGTNGKTTTTSLIAQLLRLLGKKTGLIGTIGYRLGGNDLIKNPAALTTPEALTLQSTLAEMVEAGAQYAVMEV 163 (464)
T ss_pred ccEEEEEECCCCcHhHHHHHHHHHHHcCCCEEEECccceeECCeeeecCcccCCCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5789999999999999999999999999998877777765332110 0 00110 1134679999999
Q ss_pred ccccccc--cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEecc
Q 020059 107 SSYQMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGA 184 (331)
Q Consensus 107 ~~~~~~~--~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~ 184 (331)
|+++++. ... ++|+++|||||++||+++|||+|+|+++|.++++.++++|.+|+|.|||....+.......+.++..
T Consensus 164 g~~~~~~~~l~~-~~p~iaviTnI~~dHl~~~gs~e~i~~~K~~i~~~~~~~g~~v~n~dd~~~~~~~~~~~~~~~~~~~ 242 (464)
T TIGR01085 164 SSHALAQGRVRG-VRFDAAVFTNLSRDHLDFHGTMENYFAAKASLFTELGLKRFAVINLDDEYGAQFVKRLPKDITVSAI 242 (464)
T ss_pred cHHHHhhCCccC-ceeCEEEEccCCCCCCcccCCHHHHHHHHHHHhccccCCCeEEEEcCCHHHHHHHHhcCCCeEEEEe
Confidence 9876543 333 7999999999999999999999999999999999887788999999999987776543332222221
Q ss_pred CC-----Cccccc-c----cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHhhcCC
Q 020059 185 FP-----GVKIDT-E----AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIG-VDVEALNSTIEILR 253 (331)
Q Consensus 185 ~~-----~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg-~~~~~i~~~l~~~~ 253 (331)
.. ..++.. + .....|.+...+... .+.++++|.||++|+++|+ |++..+| ++.+.|+++|++|+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a~a~~lg~i~~e~i~~~L~~~~ 317 (464)
T TIGR01085 243 TQPADGRAQDIKITDSGYSFEGQQFTFETPAGEG---HLHTPLIGRFNVYNLLAAL--ATLLHLGGIDLEDIVAALEKFR 317 (464)
T ss_pred cCCCccccccEEEEEEEEecCceEEEEEeCCceE---EEEecCccHhHHHHHHHHH--HHHHHcCCCCHHHHHHHHHhCC
Confidence 11 001100 0 011122222211111 2468999999999999999 8899998 99999999999999
Q ss_pred CCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEE
Q 020059 254 TPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVI 328 (331)
Q Consensus 254 ~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i 328 (331)
+++||||++. ..++..+|+| |||||+|++++++.+. .+|+++|+|...++. ..|++++..+.. .+.++
T Consensus 318 ~~~gR~e~~~-~~~g~~vi~D-y~~NP~s~~aal~~l~~~~~~r~i~VlGlg~~~~-----~~~~~~~~~~~~~~~d~vi 390 (464)
T TIGR01085 318 GVPGRMELVD-GGQKFLVIVD-YAHTPDALEKALRTLRKHKDGRLIVVFGCGGDRD-----RGKRPLMGAIAEQLADLVI 390 (464)
T ss_pred CCCCCcEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCcEEEEECCCCCCC-----cchhHHHHHHHHhcCCEEE
Confidence 9999999995 3457899999 6999999999999884 368899999333331 247788877743 24444
Q ss_pred e
Q 020059 329 T 329 (331)
Q Consensus 329 ~ 329 (331)
+
T Consensus 391 ~ 391 (464)
T TIGR01085 391 L 391 (464)
T ss_pred E
Confidence 3
No 32
>PRK14022 UDP-N-acetylmuramoylalanyl-D-glutamate--L-lysine ligase; Provisional
Probab=100.00 E-value=2.8e-45 Score=354.97 Aligned_cols=264 Identities=23% Similarity=0.283 Sum_probs=192.1
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcc-------------cchhhhhhcccCCCCCCCCcEEEEEec
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGN-------------PLSEAAFHCIALPSSKPKFQVAVVEVS 107 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~-------------~~~~~~~~~~~~~~~~~~~~~~VlE~~ 107 (331)
.+.++|+||||||||||++||+++|+..|.++++.|+.|. |.....++.. ....+.+.+++|||+|
T Consensus 108 ~~~~vIgITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~ig~~~~~~~~~~p~~~~l~~~~-~~~~e~g~~~~v~Evs 186 (481)
T PRK14022 108 HKLKLLAFTGTKGKTTAAYFAYHILKQLHKPAMLSTMNTTLDGETFFKSALTTPESLDLFKMM-AEAVDNGMTHLIMEVS 186 (481)
T ss_pred hccEEEEEeCCCcHHHHHHHHHHHHHHCCCCEEEEeeeeeccCCeeeeCCCCCchHHHHHHHH-HHHHHCCCCEEEEEec
Confidence 4678999999999999999999999999988877766443 3211111000 0012346789999999
Q ss_pred cccccccCc-eecccEEEEecCChhhhhc--cCCHHHHHHHHHHhccccCCCceEEEeCC-ChhhHHHHhccCccEEEec
Q 020059 108 SYQMEIPNK-YFCPTVSVVLNLTPDHLER--HKTMKNYALTKCHLFSHMVNTKLGLLPFG-NQHLNEAIKGHRFNLAWIG 183 (331)
Q Consensus 108 ~~~~~~~~~-~~~p~i~viTni~~dHl~~--~gt~e~~~~~K~~i~~~~~~~~~~v~n~d-d~~~~~~~~~~~~~~~~~~ 183 (331)
|+++...+. .++|+++|||||++||+++ |+|+|+|+++|.+|++ +++.+|+|.| |+...........++.+||
T Consensus 187 S~~~~~~r~~~~~pdiaViTNI~~DHld~L~~~t~e~~a~aK~~i~~---~~~~~Vln~d~d~~~~~~~~~~~~~~~~~g 263 (481)
T PRK14022 187 SQAYLVGRVYGLTFDVGVFLNITPDHIGPIEHPTFEDYFYHKRLLME---NSKAVVVNSDMDHFSELLEQVTPQEHDFYG 263 (481)
T ss_pred hhHHHhccccCccccEEEEcCCCcccCCCCCCCCHHHHHHHHHHHhc---CCCEEEEEcCCCHHHHHHHHhcCCCEEEEe
Confidence 986543322 3689999999999999999 8999999999999996 4678999998 5553322222223567777
Q ss_pred cCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEe
Q 020059 184 AFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVH 263 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~ 263 (331)
......+... ..|.+...+.. ...+.++++|.||++|+++|+ +++..+|++++.|+++|++ +++|||||++.
T Consensus 264 ~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~i~~~L~~-~~~~gR~e~i~ 335 (481)
T PRK14022 264 IDSENQIMAS---NAFSFEATGKL--AGTYDIQLIGKFNQENAMAAG--LACLRLGASLEDIQKGIAQ-TPVPGRMEVLT 335 (481)
T ss_pred cCCccceEEE---EEEEEEEcccC--CceEEEEEechhhHHHHHHHH--HHHHHcCCCHHHHHHHhcc-CCCCCCeEEEE
Confidence 5422111100 02333211110 011356799999999999999 8899999999999999999 88999999995
Q ss_pred eecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhhc
Q 020059 264 RDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (331)
Q Consensus 264 ~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~ 322 (331)
..+++.+|+| |||||+|++++++.++ ++|+++|+|+|.++|... +.++.+.+.
T Consensus 336 -~~~g~~vi~D-yahNP~s~~aal~~l~~~~~~r~i~V~G~~~e~g~~~----~~~~~~~~~ 391 (481)
T PRK14022 336 -QSNGAKVFID-YAHNGDSLNKLIDVVEEHQKGKLILLLGAAGNKGESR----RPDFGRVAN 391 (481)
T ss_pred -CCCCCEEEEE-CCCCHHHHHHHHHHHhhhCCCCEEEEECCCCCCCcch----hHHHHHHHH
Confidence 3467889999 6999999999998874 468999999999998644 344555553
No 33
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=100.00 E-value=6.3e-45 Score=372.70 Aligned_cols=271 Identities=17% Similarity=0.220 Sum_probs=207.5
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecc----cCcccchhhhhhcccCCCCCCCCcEEEEEecccc-ccc--
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG----NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEI-- 113 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g----~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~-~~~-- 113 (331)
.+.++|+||||||||||+.||+++|+..|.++.+.+ ++|.|.+... ..++.+++|+|+|+++ .+.
T Consensus 105 ~~~~vIgVTGT~GKTTT~~ll~~iL~~~~~~~~~~~~~n~~ig~p~~~~~--------~~~~~~~~V~E~s~s~~~~~~~ 176 (822)
T PRK11930 105 FDIPVIGITGSNGKTIVKEWLYQLLSPDYNIVRSPRSYNSQIGVPLSVWQ--------LNEEHELGIFEAGISQPGEMEA 176 (822)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhccCcEecCCcccCcchhHHHHHhc--------CCCCCcEEEEEeCCCCCChHHH
Confidence 467899999999999999999999999887665544 3566665322 1356789999999543 232
Q ss_pred cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhcc--CccEEEeccCC-Cccc
Q 020059 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGH--RFNLAWIGAFP-GVKI 190 (331)
Q Consensus 114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~--~~~~~~~~~~~-~~~~ 190 (331)
....++|+++|||||+.||+|+|+|+|+|+++|.++++. .+.+|+|.||+....+.... ..++.+||... ..++
T Consensus 177 l~~~~~PdiaViTNI~~dHLd~~gt~e~y~~aK~~i~~~---~~~~vin~Dd~~~~~~~~~~~~~~~~~~~g~~~~~~d~ 253 (822)
T PRK11930 177 LQKIIKPTIGILTNIGGAHQENFRSIKQKIMEKLKLFKD---CDVIIYNGDNELISSCITKSNLTLKLISWSRKDPEAPL 253 (822)
T ss_pred HhhhhCCCEEEEcCccHHHHhhcCCHHHHHHHHHHHhcC---CCEEEEeCCCHHHHHHHHhhhcCCcEEEEcCCCCCCcE
Confidence 223478999999999999999999999999999999984 47899999999987755322 23567777532 1111
Q ss_pred --c---cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeee
Q 020059 191 --D---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRD 265 (331)
Q Consensus 191 --~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~ 265 (331)
. .......+.+...+... .+.++++|+||++|+++|+ +++..+|++.+++.++|++|++++||||++. .
T Consensus 254 ~~~~i~~~~~~~~~~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~f~~~~gR~e~~~-~ 327 (822)
T PRK11930 254 YIPFVEKKEDHTVISYTYKGEDF---HFEIPFIDDASIENLIHCI--AVLLYLGYSADQIQERMARLEPVAMRLEVKE-G 327 (822)
T ss_pred EEEEEEEcCCceEEEEEeCCceE---EEEecCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCCeeEEEE-c
Confidence 0 01111223332222211 2478999999999999999 8899999999999999999999999999996 3
Q ss_pred cCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc--eeEEEe
Q 020059 266 IQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH--HRCVIT 329 (331)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~--~~~~i~ 329 (331)
.+++.+|||+|||||+|++++|+.++ ++++++|+|+|.++|+.+.. .|.++.+.+.. .+.+|+
T Consensus 328 ~~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~-~~~~l~~~l~~~~i~~vi~ 396 (822)
T PRK11930 328 INNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEE-LYRKVAQLISKRGIDRLIG 396 (822)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHH-HHHHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999885 25789999999999876633 48889888853 345543
No 34
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=100.00 E-value=2.4e-44 Score=374.61 Aligned_cols=271 Identities=23% Similarity=0.285 Sum_probs=205.7
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCC-----------CCCCCCcEEEEEecc
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSS 108 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~VlE~~~ 108 (331)
.+.++|+||||||||||++||+++|+..|+++++.|++|.++....+.. .+++ ..+.+++++|+|+|+
T Consensus 110 ~~~~vI~ITGTnGKTTT~~~l~~iL~~~g~~~~~~g~~~~~i~~~~i~~~~t~~~~~~~~~~l~~~~~~~~~~~VlE~ss 189 (958)
T PRK11929 110 EQLSLVAVTGTNGKTSCAQLLAQLLTRLGKPCGSIGTLGARLDGRLIPGSLTTPDAIILHRILARMRAAGADAVAMEASS 189 (958)
T ss_pred hccEEEEEECCCccHHHHHHHHHHHHHcCCCEEEECCccccCCCeeeecCCCCCCHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 3678999999999999999999999999999999999888654322211 1111 114578999999998
Q ss_pred ccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccC--ccEEEeccC
Q 020059 109 YQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHR--FNLAWIGAF 185 (331)
Q Consensus 109 ~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~--~~~~~~~~~ 185 (331)
++++..+. .++|+++|||||++||+++|||+|+|+++|++|++.+++++.+|+|.|||....+..... ..+.+++..
T Consensus 190 ~~l~~~rl~~~~p~iaviTnI~~dHl~~~gt~e~i~~~K~~i~~~~~~~~~~Vln~dd~~~~~~~~~~~~~~~~~~~~~~ 269 (958)
T PRK11929 190 HGLEQGRLDGLRIAVAGFTNLTRDHLDYHGTMQDYEEAKAALFSKLPGLGAAVINADDPAAARLLAALPRGLKVGYSPQN 269 (958)
T ss_pred chHhhCcccccccCEEEEeCCCccccccCCCHHHHHHHHHHHhcCCccCCeEEEECCCHHHHHHHHHcCCCceEEEEeeC
Confidence 87753332 268999999999999999999999999999999998888899999999999887765432 133444422
Q ss_pred C--Cccc---ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCcee
Q 020059 186 P--GVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQ 260 (331)
Q Consensus 186 ~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e 260 (331)
. ++.. ........|.+...+.... +.++++|.||++|+++|+ +++..+|+++++|+++|++|+++|||||
T Consensus 270 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a~a~~lgi~~~~I~~~L~~~~~~~gR~e 344 (958)
T PRK11929 270 AGADVQARDLRATAHGQVFTLATPDGSYQ---LVTRLLGRFNVSNLLLVA--AALKKLGLPLAQIARALAAVSPVPGRME 344 (958)
T ss_pred CCccEEEEEEEEcCCceEEEEEeCCceEE---EEecCccHhhHHHHHHHH--HHHHHcCCCHHHHHHHHhcCCCCCCCcE
Confidence 1 1111 0011122233332222222 368999999999999999 8999999999999999999999999999
Q ss_pred EEe--eecCcEEEEEcCCCCCHHHHHHHHhccC------CCcEEEEEcCCCCCCCCccCCChhhhhhhhc
Q 020059 261 IVH--RDIQGVTWVDDSKATNLEATCTGLMDLK------GHKCVILLGGQAKVLNGQESNGFEKLIEPLN 322 (331)
Q Consensus 261 ~~~--~~~~~~~iidD~~a~np~s~~~al~~~~------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~ 322 (331)
++. ...++..+|+| |||||+|++++++.++ .+|+++|+|+..+++. ++++++..+.
T Consensus 345 ~i~~~~~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~~~~r~i~V~g~g~~r~~-----~~~~~~~~~~ 408 (958)
T PRK11929 345 RVGPTAGAQGPLVVVD-YAHTPDALAKALTALRPVAQARNGRLVCVFGCGGDRDK-----GKRPEMGRIA 408 (958)
T ss_pred EeccccCCCCCEEEEE-CCCCHHHHHHHHHHHHHhcccCCCcEEEEECCCCCCCc-----chhHHHHHHH
Confidence 983 12357788889 5999999999998875 2678999997766632 6788887773
No 35
>TIGR01499 folC folylpolyglutamate synthase/dihydrofolate synthase. A mutation study of the FolC gene of E. coli suggests that both activitities belong to the same active site. Because some examples are monofunctional (and these cannot be separated phylogenetically), the model is treated as subfamily, not equivalog.
Probab=100.00 E-value=1.6e-43 Score=335.23 Aligned_cols=271 Identities=20% Similarity=0.250 Sum_probs=196.2
Q ss_pred HHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhhc------
Q 020059 31 ELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC------ 89 (331)
Q Consensus 31 ~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~------ 89 (331)
|+..+.+.+. ++.++||||||||||||++||+++|++.|+++++.++. |.+++...+..
T Consensus 3 r~~~~l~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~g~~vg~~tSphl~~~~eri~i~g~~i~~~~~~~~~~~v~ 82 (397)
T TIGR01499 3 RMKKLLEALGNPQDLYPVIHVAGTNGKGSTCAFLESILRAAGYKVGLFTSPHLVSFNERIRINGEPISDEELAQAFEQVR 82 (397)
T ss_pred HHHHHHHHcCCcHhhCCEEEEeCCCChHHHHHHHHHHHHHcCCCeeEEeCCCcCccceEEEECCEECCHHHHHHHHHHHH
Confidence 4444444431 35689999999999999999999999999999777663 33333311100
Q ss_pred --c-c---CC-------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHH
Q 020059 90 --I-A---LP-------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCH 148 (331)
Q Consensus 90 --~-~---~~-------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~ 148 (331)
. . ++ +.+.++|++|||+|.+ .++.++ .++|+++|||||+.||+++|| |+|+|+++|++
T Consensus 83 ~~~~~~~~~~~~fe~~t~~A~~~f~~~~~d~~VlEvGlggrld~tn-~i~p~vaViTnI~~DHl~~lG~t~e~ia~~Ka~ 161 (397)
T TIGR01499 83 PILEKLSQQPTYFELLTLLAFLYFAQAQVDVAVLEVGLGGRLDATN-VIEPLVSVITSIGLDHTEILGDTLEEIAWEKAG 161 (397)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHCCCCEEEEeecCCCCccccc-ccCCCeEEEccccHHHHHHhCccHHHHHHHHhC
Confidence 0 0 11 2257899999999975 456554 478999999999999999999 99999999999
Q ss_pred hccccCCCceEEEeCCChhhHHHHhc----cCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHH
Q 020059 149 LFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYH 224 (331)
Q Consensus 149 i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~ 224 (331)
|++ +++.+|+|.||+....+... ...++.+++.+ +.+.. .....+.+..... ....+.++++|.||++
T Consensus 162 I~k---~~~~~v~~~d~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~~~~~~l~G~~~~~ 233 (397)
T TIGR01499 162 IIK---EGVPIVTGPQEPEALNVLKKKAQEKGAPLFVVGRD--FNYSE-TDENYLSFSGANL--FLEPLALSLLGDHQAE 233 (397)
T ss_pred ccC---CCCCEEEcCCChHHHHHHHHHHHHcCCCEEEeccc--eeecc-cccceEEeecccc--cccccCCCCCCHHHHH
Confidence 998 46789999999887655322 23345555532 11110 0011233321111 0112367899999999
Q ss_pred HHHHHHHHHHHHHcCC-----CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcE
Q 020059 225 NAAVAALSVLGLDIGV-----DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKC 295 (331)
Q Consensus 225 NalaA~~~a~~~~lg~-----~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~ 295 (331)
|+++|+ +++..+|. +.+.|+++|+++. +|||||++. .++..+|.|+ ||||+|++++++.++ .+++
T Consensus 234 N~~~Ai--aa~~~lg~~~~~i~~~~i~~~L~~~~-~pGR~e~i~--~~~~~viiD~-AHNp~a~~~~l~~l~~~~~~~~i 307 (397)
T TIGR01499 234 NAALAL--AALEVLGKQRPKLSEEAIRKGLANTI-WPGRLEILS--EDNPNILLDG-AHNPHSAEALAEWFKKRFNGRPI 307 (397)
T ss_pred HHHHHH--HHHHHHHhccCCCCHHHHHHHHHhCC-CCceEEEEe--cCCCEEEEEC-CCCHHHHHHHHHHHHHhcCCCCe
Confidence 999999 78888875 5899999999998 599999995 3356676775 999999999998874 2478
Q ss_pred EEEEcCCCCCCCCccCCChhhhhhhhcc
Q 020059 296 VILLGGQAKVLNGQESNGFEKLIEPLNH 323 (331)
Q Consensus 296 i~V~G~~~~~g~~~~~~~~~~l~~~l~~ 323 (331)
++|+|+++++ |+.++...+.+
T Consensus 308 ~~V~G~~~dk-------d~~~~~~~l~~ 328 (397)
T TIGR01499 308 ILLFGALADK-------DAAAMLAPLKP 328 (397)
T ss_pred EEEEEeeCCC-------CHHHHHHHHhh
Confidence 8999999887 78898888754
No 36
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.6e-42 Score=329.22 Aligned_cols=278 Identities=25% Similarity=0.334 Sum_probs=215.5
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccch-hhhhh-cccCC-----------CCCCCCcEEEEEecc
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAFH-CIALP-----------SSKPKFQVAVVEVSS 108 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~-~~~~~-~~~~~-----------~~~~~~~~~VlE~~~ 108 (331)
+.++|+||||||||||++++.++++..|+++++.|+.|..++ ..... ..++| ..+...++++||+++
T Consensus 90 ~l~vigvTGTNgKTt~t~~~~~~~~~~g~~~~~~gT~g~~~~~~~~~~~~~tTP~~~~l~~~~~~~~d~~~e~~vmEvss 169 (475)
T COG0769 90 KLKVIGVTGTNGKTTTTSLLAQILKKLGKKTALIGTEGDELSPGILEPTGLTTPEALDLQNLLRDLLDRGAEIAVMEVSS 169 (475)
T ss_pred CceEEEEcCCCcHHHHHHHHHHHHHhcCCceEEEEEEeeeccCCcccccCCCCccHHHHHHHHHHHHHcCCcEEEEEeeh
Confidence 589999999999999999999999999999988888776553 11111 12333 125678999999999
Q ss_pred ccccccCce-ecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHH---HhccCccEEEecc
Q 020059 109 YQMEIPNKY-FCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEA---IKGHRFNLAWIGA 184 (331)
Q Consensus 109 ~~~~~~~~~-~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~---~~~~~~~~~~~~~ 184 (331)
+++.+.+.. ...+++++||++.||+|+|+|+|+|+.+|..+|+.+++.+..|+|.||++...+ ......+.+++|.
T Consensus 170 h~l~~~Rv~~~~f~v~~ftnls~DHlD~h~t~e~Y~~aK~~lf~~~~~~~~~Vin~dd~~~~~~~~~~~~~~~~~~~~~~ 249 (475)
T COG0769 170 HGLVQGRVEGVTFDVGVFTNLSRDHLDYHGTMEYYGAAKAVLFESLPHSGEAVINPDDGHGLDYKERLKNALGDYITYGC 249 (475)
T ss_pred hHHHhCCccCceEEEEeccccCchhhcccCcHHHHHHHHHHHHhhcCCCccEEEccCCchHHHHHHHHHhcCCCEEEeCC
Confidence 998776664 367999999999999999999999999999999866778899999999998443 3333335677776
Q ss_pred CCCcc------cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCc
Q 020059 185 FPGVK------IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHR 258 (331)
Q Consensus 185 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR 258 (331)
..... ++.......+.+...+... .+++|++|.||++|+|+|+ +++..+|+|+++|+++++++++++||
T Consensus 250 ~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~---~~~~~L~G~fNv~NaLaA~--a~~~~lG~~~e~i~~~l~~~~~v~GR 324 (475)
T COG0769 250 DFKRPDLDYRGIEESSSGSDFVFEPSGGIG---EYELPLPGLFNVYNALAAV--AAALALGVDLEDILAGLETLKPVPGR 324 (475)
T ss_pred CCchhhhhhccceeeeccceeEEEccCCce---eEeccccchhHHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCCCc
Confidence 54311 1111111222222222222 3479999999999999999 88999999999999999999999999
Q ss_pred eeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhhcceeEEEe
Q 020059 259 MQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 259 ~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~~~~i~ 329 (331)
||.+. .++..++.| |||||++++++|+.++ .+|+++|+|+.++. |.+++.+...++..+.+. ++||
T Consensus 325 mE~v~--~~~~~v~VD-yAHnPd~le~~L~~~~~~~~g~li~VfG~gGDr-D~~kr~~mg~ia~~~ad~-vivt 393 (475)
T COG0769 325 MELVN--IGGKLVIVD-YAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDR-DKSKRPDMGAIAEQLADI-VIVT 393 (475)
T ss_pred ceEec--CCCCeEEEE-eccChHHHHHHHHHHHhhcCCcEEEEECccCCC-CcccccchHHHHHhcCCc-EEEc
Confidence 99996 347777778 5999999999998875 47899999999998 778777777777776653 4443
No 37
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=100.00 E-value=1.5e-40 Score=339.41 Aligned_cols=280 Identities=19% Similarity=0.212 Sum_probs=204.8
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc--ccCC------CCCCCCcEEEEEecccccc
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC--IALP------SSKPKFQVAVVEVSSYQME 112 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~--~~~~------~~~~~~~~~VlE~~~~~~~ 112 (331)
.+.|+|+||||||||||++||+++|+..|+++++.++.|..+.....+. .+.+ ..++++|++|+|++++++.
T Consensus 477 ~~ipiI~VTGTNGKTTTt~mia~IL~~~G~~vG~~tS~G~~i~~~~i~~g~~t~p~sa~~~l~~~~vd~aVlE~~~ggil 556 (864)
T TIGR02068 477 GRIPIVSVTGTNGKTTTTRLVAHILKQTGKVVGMTTTDGVYIGKYLVEKGDNTGPASARRILMDPTVDAAVLETARGGIL 556 (864)
T ss_pred CceEEEEEeCCCCHhHHHHHHHHHHHHCCCcEEEecCCceEECCEEEecCCCCChHHHHHHhhCCCCCEEEEEccCCchh
Confidence 4578999999999999999999999999999987666554433221100 0000 1356789999999998864
Q ss_pred cc-CceecccEEEEecCChhhhhcc--CCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCcc
Q 020059 113 IP-NKYFCPTVSVVLNLTPDHLERH--KTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVK 189 (331)
Q Consensus 113 ~~-~~~~~p~i~viTni~~dHl~~~--gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~ 189 (331)
.. ....+|+++|||||+.||++++ +|+|+|+++|+.+++.+++++.+|+|+|||.+..++.....++++|+.+.+..
T Consensus 557 ~~gl~~~~pdvaVITNI~~DHL~~~g~~tlE~ia~~K~~i~~~i~~~g~~VlNaDd~~~~~~a~~~~~~vi~f~~~~~~~ 636 (864)
T TIGR02068 557 REGLAFDRCDVGVVTNIAGDHLGIGDINTIEDLADVKRVVVEVVLPDGYAVLNADDPMVAAMAEKCKGKIAYFSMDPNNP 636 (864)
T ss_pred hccCCcccccEEEEecCCHHHcCCCCCCCHHHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHhCCCCEEEEecCCCCh
Confidence 43 3345899999999999999864 69999999999999988889999999999999888776666788887543211
Q ss_pred c-----cccccc-----ceEEEecCceeE---EEEeecCCCCc--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC
Q 020059 190 I-----DTEAKT-----ASFEVPAVGVVS---QLQLHNMKVMG--RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT 254 (331)
Q Consensus 190 ~-----~~~~~~-----~~~~~~~~~~~~---~~~~~~l~l~G--~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~ 254 (331)
. ..+... ..+.....+... ....+.+++.| .||++|+++|+ ++++.+|++.+.|+++|++|++
T Consensus 637 ~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~lpl~~~G~g~~nv~NalaAi--aaa~~lgi~~e~I~~gL~~F~~ 714 (864)
T TIGR02068 637 TVAAHIADGGRAVYYENGYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRTFDA 714 (864)
T ss_pred HHHHHHHcCCcEEEEcCCEEEEEecCccccccceeeeccccCCcccchHHHHHHHH--HHHHHcCCCHHHHHHHHHhccc
Confidence 1 001000 001111111111 11122344445 89999999999 8899999999999999999986
Q ss_pred ----CCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc---CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeE
Q 020059 255 ----PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL---KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRC 326 (331)
Q Consensus 255 ----~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~---~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~ 326 (331)
.|||||++. .++..+|+|| ||||+|++++++.+ +.+|+++|+|+++++.+ .++.++.+.+.+ .+.
T Consensus 715 ~~~~~pGR~e~~~--~~g~~vI~Dy-AHNP~a~~all~~l~~~~~~r~i~Vig~~gdr~~----~~~~~lg~~l~~~~d~ 787 (864)
T TIGR02068 715 DAAQAPGRFNLFN--LGGAHVLVDY-GHNPAAIEAVGAAIRNWPARRRIGVIGGPGDRRD----EDLVEQGELLGGAFDQ 787 (864)
T ss_pred cccCCCCceEEEE--eCCcEEEEEc-CCCHHHHHHHHHHHHhcCCCCEEEEECCCCCCCh----hHHHHHHHHHHHhCCE
Confidence 899999984 4678899994 99999999776665 34678999999977643 357777777754 344
Q ss_pred EEe
Q 020059 327 VIT 329 (331)
Q Consensus 327 ~i~ 329 (331)
+|+
T Consensus 788 vil 790 (864)
T TIGR02068 788 IIL 790 (864)
T ss_pred EEE
Confidence 443
No 38
>PLN02913 dihydrofolate synthetase
Probab=100.00 E-value=3.3e-40 Score=319.29 Aligned_cols=286 Identities=16% Similarity=0.191 Sum_probs=198.2
Q ss_pred eeHHHHHHhhC--C-CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------C--cccchhhhhhc--
Q 020059 29 MSELDFAAQVI--P-RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------L--GNPLSEAAFHC-- 89 (331)
Q Consensus 29 l~~~~~~~~~~--~-~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~--g~~~~~~~~~~-- 89 (331)
|.|+..+.+.+ | ++.++|+||||||||||++||+++|+++|++++++.+ . |.|++...+..
T Consensus 58 L~r~~~ll~~LG~P~~~~~vIhVaGTNGKGSt~a~l~~iL~~aG~~vG~fTSPHl~~~~ERi~in~~g~~is~~~~~~~~ 137 (510)
T PLN02913 58 LGRMRRLMDRLGNPHSKFKAVHVAGTKGKGSTAAFLSNILRAQGYSVGCYTSPHLRSIRERISVGKLGKPVSTNTLNDLF 137 (510)
T ss_pred HHHHHHHHHHcCCchhhCcEEEEeCCCchHHHHHHHHHHHHhcCCCeEEECCCCCceeceEEEECCCCCcCCHHHHHHHH
Confidence 56677666655 2 3568999999999999999999999999999976654 2 45555443210
Q ss_pred ---------c-------cCC-----------CCCCCCcEEEEEeccc-cccccCce--ecccEEEEecCChhhhhccC-C
Q 020059 90 ---------I-------ALP-----------SSKPKFQVAVVEVSSY-QMEIPNKY--FCPTVSVVLNLTPDHLERHK-T 138 (331)
Q Consensus 90 ---------~-------~~~-----------~~~~~~~~~VlE~~~~-~~~~~~~~--~~p~i~viTni~~dHl~~~g-t 138 (331)
. .+. +.+.++|++|+|+|.| .+|.++.. ..|+++|||||+.||++++| |
T Consensus 138 ~~v~~~~~~~~~~~~~~~T~FE~~T~~A~~~F~~~~vD~aVlEvGlGGrlDaTNvi~~~~p~vsVITnIg~DH~~~LG~T 217 (510)
T PLN02913 138 HGIKPILDEAIQLENGSLTHFEVLTALAFKLFAQENVDIAVIEAGLGGARDATNVIDSSGLAASVITTIGEEHLAALGGS 217 (510)
T ss_pred HHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhCCCCEEEEEecCCCCcccccccCCCCCcEEEEccccHHHHhhhccc
Confidence 0 000 2357899999999976 46776653 23599999999999999999 9
Q ss_pred HHHHHHHHHHhccccCCCceEEEeC-CChhhHHH----HhccCccEEEeccCCCccccc---c-cccceEEEec-----C
Q 020059 139 MKNYALTKCHLFSHMVNTKLGLLPF-GNQHLNEA----IKGHRFNLAWIGAFPGVKIDT---E-AKTASFEVPA-----V 204 (331)
Q Consensus 139 ~e~~~~~K~~i~~~~~~~~~~v~n~-dd~~~~~~----~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~-----~ 204 (331)
+|+|+++|++|++ ++..+|++. ..+....+ +.....++.+++.. ++.+.. . .....+.+.. .
T Consensus 218 le~IA~eKagIik---~g~pvV~~~~~~~~~~~vi~~~a~~~~a~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (510)
T PLN02913 218 LESIALAKSGIIK---QGRPVVLGGPFLPHIESILRDKASSMNSPVVSASDP-GVRSSIKGIITDNGKPCQSCDIVIRVE 293 (510)
T ss_pred HHHHHHHHhhhcc---CCCCEEECCCCCHHHHHHHHHHHHHhCCCEEEeccc-cccceeecccccCCceeEEeccccccc
Confidence 9999999999998 577788875 33444333 23334555555321 111100 0 0111122110 0
Q ss_pred c---eeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc-----CCCHHHHHHHhhcCCCCCCceeEEeee------cCcEE
Q 020059 205 G---VVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-----GVDVEALNSTIEILRTPPHRMQIVHRD------IQGVT 270 (331)
Q Consensus 205 ~---~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l-----g~~~~~i~~~l~~~~~~~gR~e~~~~~------~~~~~ 270 (331)
+ .......+.++++|.||++|+++|+ +++..+ +++.+.|+++|++++| |||||++... ..+..
T Consensus 294 ~~~~~~~~~~~~~l~L~G~hq~~Naa~Al--aa~~~L~~~~~~i~~~~I~~gL~~~~~-pGR~E~i~~~~~~~~~~~~~~ 370 (510)
T PLN02913 294 KDDPLFIELSDVNLRMLGSHQLQNAVTAA--CAALCLRDQGWRISDASIRAGLENTNL-LGRSQFLTSKEAEVLGLPGAT 370 (510)
T ss_pred cccccccccccccCCCCCHHHHHHHHHHH--HHHHHHHhcCCCCCHHHHHHHHHhCCC-CCceEEeeccccccccCCCCE
Confidence 0 0001112468899999999999999 677776 7999999999999997 7999998411 12457
Q ss_pred EEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc---eeEEEe
Q 020059 271 WVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH---HRCVIT 329 (331)
Q Consensus 271 iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~---~~~~i~ 329 (331)
||+|+ +|||+|++++++.+. .+|+++|+|.+.++ |+.++++.+.+ .+.+++
T Consensus 371 vIlDg-AHNp~s~~al~~~L~~~~~~~ki~~V~gml~DK-------d~~~~l~~l~~~~~~d~v~~ 428 (510)
T PLN02913 371 VLLDG-AHTKESAKALVDTIKTAFPEARLALVVAMASDK-------DHLAFASEFLSGLKPEAVFL 428 (510)
T ss_pred EEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEEEccCCC-------CHHHHHHHHhcccCCCEEEE
Confidence 88896 799999999988763 35788888988777 89999986633 344444
No 39
>COG0285 FolC Folylpolyglutamate synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.2e-40 Score=305.94 Aligned_cols=271 Identities=21% Similarity=0.237 Sum_probs=196.2
Q ss_pred eeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhhc----
Q 020059 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHC---- 89 (331)
Q Consensus 29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~---- 89 (331)
|.|+..+.+.+. +..++|+|+|||||+||++||++||.++|++++...+ .|.|++...+..
T Consensus 27 L~Ri~~ll~~LGnP~~~~~vIhVaGTNGKGSt~afl~siL~~aG~~VG~yTSPHL~~~~ERI~ing~~Isd~~~~~~~~~ 106 (427)
T COG0285 27 LERISRLLERLGNPQKSPPVIHVAGTNGKGSTCAFLESILREAGYKVGVYTSPHLLSFNERIRINGEPISDEELAAAFER 106 (427)
T ss_pred hHHHHHHHHHcCCccccCCeEEEeCCCCchhHHHHHHHHHHHcCCCceEECCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 778877777652 5678999999999999999999999999999954443 233443332210
Q ss_pred ---ccC------C-------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHHHHHH
Q 020059 90 ---IAL------P-------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALT 145 (331)
Q Consensus 90 ---~~~------~-------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~ 145 (331)
... + +.+.++|++|+|+|.| .+|.+++ +.|+++|||+|+.||++++| |+|+|+.+
T Consensus 107 ve~~~~~~~~~~~T~FE~~Ta~Af~~F~~~~vD~aIlEVGLGGRlDATNV-i~p~vsvIT~I~lDH~~~LG~tie~IA~E 185 (427)
T COG0285 107 VEEAAGSLDLISLTYFEVLTAMAFLYFAEAKVDVAILEVGLGGRLDATNV-IEPDVSVITSIGLDHTAFLGDTLESIARE 185 (427)
T ss_pred HHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEeccccccccchhc-cCCceEEEcccChhHHHHhCCcHHHHHHH
Confidence 000 0 2255699999999975 5777776 78999999999999999999 99999999
Q ss_pred HHHhccccCCCceEEEeC-CChhhHHHHh----ccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcH
Q 020059 146 KCHLFSHMVNTKLGLLPF-GNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGR 220 (331)
Q Consensus 146 K~~i~~~~~~~~~~v~n~-dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~ 220 (331)
|++|++ ++..+|+.. +.|....... ....++..++.+ +..... ...+.....+. .....+|++|.
T Consensus 186 KAGI~k---~g~P~v~~~~~~p~a~~vi~~~a~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~---~~~~~lp~l~~ 255 (427)
T COG0285 186 KAGIIK---AGKPAVIGEQQPPEALNVIAERAEELGAPLFVLGPD--FQVLEE--GNGFSFQGGGG---LLDLPLPLLGG 255 (427)
T ss_pred hhhhcc---CCCcEEECCCCCHHHHHHHHHHHHhcCCCeeecccc--hhhccc--cceEEEecCCe---eeeeccccccc
Confidence 999998 455677765 4565554432 223333333221 111111 12233332222 12347898888
Q ss_pred H-HHHHHHHHHHHHHHHHcC--CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CC
Q 020059 221 H-NYHNAAVAALSVLGLDIG--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GH 293 (331)
Q Consensus 221 ~-n~~NalaA~~~a~~~~lg--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~ 293 (331)
| |+.|+++|+ +++..++ ++.+.|++||++..| |||||++. .++ .++.| .||||+|+.++.+.++ .+
T Consensus 256 ~~Q~~NAa~Ai--~al~~l~~~i~~~~i~~gl~~~~w-pGR~e~l~--~~p-~i~lD-gAHNp~aa~~La~~l~~~~~~~ 328 (427)
T COG0285 256 HHQIENAALAI--AALEALGKEISEEAIRKGLANVDW-PGRLERLS--ENP-LILLD-GAHNPHAARALAETLKTLFNDR 328 (427)
T ss_pred hhHHHHHHHHH--HHHHHhcccCCHHHHHHHHHhCcC-CceEEEec--CCC-eEEEE-CCCCHHHHHHHHHHHHHHhccC
Confidence 7 999999999 8888887 589999999999998 99999994 454 45556 5999999988877663 23
Q ss_pred c-EEEEEcCCCCCCCCccCCChhhhhhhhcce
Q 020059 294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNHH 324 (331)
Q Consensus 294 ~-~i~V~G~~~~~g~~~~~~~~~~l~~~l~~~ 324 (331)
+ +++|+|.+.+| |...+++.+.+.
T Consensus 329 ~~~~~v~g~l~dK-------d~~~~l~~L~~~ 353 (427)
T COG0285 329 PRLTLVFGMLKDK-------DIAGMLAALLPI 353 (427)
T ss_pred CceEEEEEeecCC-------CHHHHHHHhhcc
Confidence 3 89999999999 788888888665
No 40
>PRK10846 bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional
Probab=100.00 E-value=6.1e-40 Score=312.09 Aligned_cols=269 Identities=19% Similarity=0.170 Sum_probs=186.4
Q ss_pred eeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhhc---
Q 020059 28 VMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--- 89 (331)
Q Consensus 28 ~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~--- 89 (331)
-|.|+..+.+.+. ++.++||||||||||||++||+++|+++|++++++++. |.+++...+..
T Consensus 31 ~l~~~~~ll~~lg~p~~~~~~I~VtGTNGKgSt~~~l~~iL~~~G~~vG~~tSphl~~~~eri~i~g~~i~~~~~~~~~~ 110 (416)
T PRK10846 31 GLERVSQVAARLDLLKPAPFVFTVAGTNGKGTTCRTLESILMAAGYRVGVYSSPHLVRYTERVRIQGQELPESAHTASFA 110 (416)
T ss_pred ChHHHHHHHHHhCCCccCCCEEEEECCCChHHHHHHHHHHHHHcCCCceEECCCCCCCcceEEEECCEECCHHHHHHHHH
Confidence 4666666666552 35689999999999999999999999999999776642 23332111100
Q ss_pred ----------cc----------CCCCCCCCcEEEEEec-cccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 020059 90 ----------IA----------LPSSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (331)
Q Consensus 90 ----------~~----------~~~~~~~~~~~VlE~~-~~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~ 147 (331)
.+ ..+.++++|++|+|+| +++++.++. ++|+++|||||++||+++|| |+|+|+++|+
T Consensus 111 ~~~~~~~~~~~t~fe~~t~~a~~~f~~~~vd~~VlEvglggrld~tn~-i~p~vaviTnI~~DHld~lG~t~e~ia~~Ka 189 (416)
T PRK10846 111 EIEAARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNI-VDADVAVVTSIALDHTDWLGPDRESIGREKA 189 (416)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCCCCchhhhc-cCCCEEEECCccHHHHHHhcCCHHHHHHHHH
Confidence 00 0023567899999999 567777665 68999999999999999999 8999999999
Q ss_pred HhccccCCCceEEEeCCC-hh-hHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHH
Q 020059 148 HLFSHMVNTKLGLLPFGN-QH-LNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHN 225 (331)
Q Consensus 148 ~i~~~~~~~~~~v~n~dd-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~N 225 (331)
+|++ +++.+|+|.|| +. ....+.+...++..++.. +.+..+. ..+.+..... . ...++++ .||++|
T Consensus 190 ~Iik---~~~~~V~~~~d~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~--~--~~~~~l~-~~~~~N 257 (416)
T PRK10846 190 GIFR---AEKPAVVGEPDMPSTIADVAQEKGALLQRRGVD--WNYSVTD--HDWAFSDGDG--T--LENLPLP-NVPLPN 257 (416)
T ss_pred hhhc---CCCeEEECCccHhHHHHHHHHHhCCcEEEecce--eeeeccC--ceEEEecCcc--c--cccCCcc-chHHHH
Confidence 9998 36678888766 43 223344344444433321 1110000 1122111110 0 1135555 479999
Q ss_pred HHHHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhc---cC-CCcEEEEE
Q 020059 226 AAVAALSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD---LK-GHKCVILL 299 (331)
Q Consensus 226 alaA~~~a~~~--~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~---~~-~~~~i~V~ 299 (331)
+++|+ +++. .++++.+.|+++|++++ +|||||++. .. ..+|+|+ ||||++++++++. +. .+|+++|+
T Consensus 258 ~~~Ai--a~~~~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~-~~iI~D~-AHNp~a~~~l~~~L~~~~~~~~ii~Vf 330 (416)
T PRK10846 258 AATAL--AALRASGLEVSEQAIRDGIASAI-LPGRFQIVS--ES-PRVILDV-AHNPHAAEYLTGRLKALPKNGRVLAVI 330 (416)
T ss_pred HHHHH--HHHHHcCCCCCHHHHHHHHHhCC-CCceEEEEc--CC-CcEEEEC-CCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99998 6653 36799999999999999 599999995 23 3577786 9999999988544 33 35899999
Q ss_pred cCCCCCCCCccCCChhhhhhhhcc
Q 020059 300 GGQAKVLNGQESNGFEKLIEPLNH 323 (331)
Q Consensus 300 G~~~~~g~~~~~~~~~~l~~~l~~ 323 (331)
|.++++ |+...+..+.+
T Consensus 331 g~~gdk-------d~~~~l~~L~~ 347 (416)
T PRK10846 331 GMLHDK-------DIAGTLACLKS 347 (416)
T ss_pred EeeCCC-------CHHHHHHHHhh
Confidence 999877 67777766643
No 41
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=100.00 E-value=3.2e-37 Score=294.50 Aligned_cols=260 Identities=21% Similarity=0.228 Sum_probs=187.8
Q ss_pred eeeHHHHHHhhCC-----CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhh---
Q 020059 28 VMSELDFAAQVIP-----RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAF--- 87 (331)
Q Consensus 28 ~l~~~~~~~~~~~-----~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~--- 87 (331)
-|.|+..+.+.+. +++++||||||||||||++|+++||++.|++++++++. |.|++...+
T Consensus 41 ~L~rm~~~L~~LG~p~~~~~l~vIhVaGTnGKGSt~a~l~siL~~~G~rvGl~tSPhL~~~rERiring~~Is~e~f~~~ 120 (530)
T PLN02881 41 QFDLLFDYLKILELEEAISRLKVIHVAGTKGKGSTCTFTESILRNCGFRTGLFTSPHLIDVRERFRLDGVDISEEKFLRY 120 (530)
T ss_pred ChHHHHHHHHHcCCCchhhcCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEECCCccCcceeEEEECCEecCHHHHHHH
Confidence 3556666655442 36689999999999999999999999999999776662 445544211
Q ss_pred --------hccc-C----C-------------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CH
Q 020059 88 --------HCIA-L----P-------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TM 139 (331)
Q Consensus 88 --------~~~~-~----~-------------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~ 139 (331)
+... . + +.+.++|++|+|+|. +.+|.++...+|+++|||||+.||+++|| |+
T Consensus 121 f~~v~~~l~~~~~~~~~~pt~Fe~lTlla~~~F~~~~vD~aVlEvGlgGr~DaTnvi~~p~v~vITnIg~DH~~~LG~Tl 200 (530)
T PLN02881 121 FWWCWDRLKEKTTEDLPMPAYFRFLTLLAFKIFSAEQVDVAILEVGLGGRLDATNVVQKPVVCGITSLGYDHMEILGDTL 200 (530)
T ss_pred HHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHhCCCCEEEEEecCCCCchhhhccCCCCEEEEccccHHHHHhhcCCH
Confidence 1000 0 1 125678999999995 56777775458999999999999999999 99
Q ss_pred HHHHHHHHHhccccCCCceEEEeCCChhhHHHHh----ccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecC
Q 020059 140 KNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNM 215 (331)
Q Consensus 140 e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 215 (331)
|+|+.+|++|++ ++..+|+..+.+....++. ....++..++.. + .+. +....+
T Consensus 201 e~IA~~KagI~k---~g~p~vt~~q~~ea~~vl~~~A~e~~a~l~~v~~~-------~----~~~---------~~~~~l 257 (530)
T PLN02881 201 GKIAGEKAGIFK---PGVPAFTVPQPDEAMRVLEERASELGVPLQVVEPL-------D----SYG---------LSGLKL 257 (530)
T ss_pred HHHHHHHHHHHh---cCCCEEEeCCChHHHHHHHHHHHHhCCcEEEeccc-------c----cce---------ecccCC
Confidence 999999999998 5666777666666655442 223333332210 0 011 112368
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHc---------------CCCHHHHHHHhhcCCCCCCceeEEee------ecCcEEEEEc
Q 020059 216 KVMGRHNYHNAAVAALSVLGLDI---------------GVDVEALNSTIEILRTPPHRMQIVHR------DIQGVTWVDD 274 (331)
Q Consensus 216 ~l~G~~n~~NalaA~~~a~~~~l---------------g~~~~~i~~~l~~~~~~~gR~e~~~~------~~~~~~iidD 274 (331)
++.|.||..|+++|+ +++..+ ...++.+++||+++.| |||||++.. ..++..++.|
T Consensus 258 ~L~G~~Q~~NaalAl--a~~~~~l~~~~~~~~~~~~~~~~l~~~i~~GL~~~~w-pGR~e~v~~~~~~~~~~~~~~~~LD 334 (530)
T PLN02881 258 GLAGEHQYLNAGLAV--ALCSTWLQRTGHEEFEALLQAGTLPEQFIKGLSTASL-QGRAQVVPDSYINSEDSGDLVFYLD 334 (530)
T ss_pred CCCChhHHHhHHHHH--HHHHHHHhhccccccccccccCCCHHHHHHHHHhCCC-CceEEEeccccccccCCCCCeEEEE
Confidence 899999999999999 555543 2345689999999997 999999941 0145678888
Q ss_pred CCCCCHHHHHHHHhccC------------------------------CCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059 275 SKATNLEATCTGLMDLK------------------------------GHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (331)
Q Consensus 275 ~~a~np~s~~~al~~~~------------------------------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l 321 (331)
. ||||+|++++.+.+. ..++++|||.|.++ |+..+++.|
T Consensus 335 G-AHNp~s~~~l~~wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilvF~~~~dk-------D~~~lL~~L 403 (530)
T PLN02881 335 G-AHSPESMEACARWFSSAIKGDEQSPGSGYGPHGGGGKSEDTESNKISEQILLFNCMSVR-------DPQLLLPPL 403 (530)
T ss_pred C-CCCHHHHHHHHHHHHHHhcccccCCcccccccccccccccccccCCCCEEEEEcCCCCC-------CHHHHHHHH
Confidence 5 999999998877651 12689999999998 777777766
No 42
>PRK14016 cyanophycin synthetase; Provisional
Probab=100.00 E-value=1.6e-34 Score=290.18 Aligned_cols=251 Identities=18% Similarity=0.191 Sum_probs=177.4
Q ss_pred eccccccCC-hHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhh
Q 020059 7 FLLEFQLKA-TGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEA 85 (331)
Q Consensus 7 ~~~~~~~~~-p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~ 85 (331)
.+|+++..+ |....+++.+.+++..+..... +.+.|+|+||||||||||++|++++|+..|+++++.++.|..+...
T Consensus 445 ~sPgi~~~~~p~~g~~r~v~~~Iid~L~~~~~--~~ripiIaVTGTnGKTTTt~lla~iL~~~G~~vg~~~t~G~~i~~~ 522 (727)
T PRK14016 445 AAPGLRMHLAPSEGKPRNVGEAIVDMLFPEGD--DGRIPIVAVTGTNGKTTTTRLIAHILKLSGKRVGMTTTDGVYIDGR 522 (727)
T ss_pred CCcchhhccCCCCCcchhHHHHHHHHhcccCC--CCceeEEEEECCCCchHHHHHHHHHHHHcCCeEEEECCCCEEECCE
Confidence 355555433 6555566666566555322111 1367999999999999999999999999999998888877655332
Q ss_pred hhhcc--cC------CCCCCCCcEEEEEeccccccccCc-eecccEEEEecCChhhhhccC--CHHHHHHHHHHhccccC
Q 020059 86 AFHCI--AL------PSSKPKFQVAVVEVSSYQMEIPNK-YFCPTVSVVLNLTPDHLERHK--TMKNYALTKCHLFSHMV 154 (331)
Q Consensus 86 ~~~~~--~~------~~~~~~~~~~VlE~~~~~~~~~~~-~~~p~i~viTni~~dHl~~~g--t~e~~~~~K~~i~~~~~ 154 (331)
....- +. -..+++.|++|+|+|++++..... +.+|+++|||||+.||+++++ |+|+|+++|+.+++.++
T Consensus 523 ~i~~gd~t~p~s~~~ll~~~~~d~aVlE~s~~~il~~gl~~~~pdvaVvTNI~~DHL~~~~~~t~E~~~~~K~~i~~~v~ 602 (727)
T PRK14016 523 LIDKGDCTGPKSARRVLMNPDVEAAVLETARGGILREGLAYDRCDVGVVTNIGEDHLGLGGINTLEDLAKVKRVVVEAVK 602 (727)
T ss_pred EeccccccCHHHHHHHhcCCCCCEEEEEcCCCchhhcCCcccccCeEEEcCCCHHHhhccCCCCHHHHHHHHHHHHhhhC
Confidence 11000 00 012456799999999988754332 468999999999999999875 99999999999999888
Q ss_pred CCceEEEeCCChhhHHHHhccCccEEEeccCCCccc-----cccccc-----ceEEEecCceeEE---EEeecCCCCc--
Q 020059 155 NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI-----DTEAKT-----ASFEVPAVGVVSQ---LQLHNMKVMG-- 219 (331)
Q Consensus 155 ~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~---~~~~~l~l~G-- 219 (331)
++|.+|+|+||+.+..+......++++|+.+++..+ ..+... ..+.+...+.+.. +..+.+.++|
T Consensus 603 ~~g~aVlNaDD~~~~~~~~~~~~~vi~fs~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~i~l~~~G~~ 682 (727)
T PRK14016 603 PDGYAVLNADDPMVAAMAERCKGKVIFFSMDPDNPVIAEHRAQGGRAVYVEGDYIVLAEGGWEIRIISLADIPLTLGGKA 682 (727)
T ss_pred CCCeEEEcCCCHHHHHHHHhCCCcEEEEeCCCCChHHHHHHHhCCceEEEeCCEEEEEeCCcceeeccccccceecCCcc
Confidence 899999999999998887766667888886532111 001100 0111111111111 1112333366
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCC----CCCceeE
Q 020059 220 RHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRT----PPHRMQI 261 (331)
Q Consensus 220 ~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~----~~gR~e~ 261 (331)
.||++|+++|+ |+++.+|++.+.|+++|++|++ +||||++
T Consensus 683 ~hnv~NalAAi--Aaa~~lGi~~~~I~~~L~sF~~~~~~~pGR~n~ 726 (727)
T PRK14016 683 GFNIENALAAI--AAAWALGIDIELIRAGLRTFVSDAAQAPGRFNL 726 (727)
T ss_pred hhhHHHHHHHH--HHHHHcCCCHHHHHHHHHhcCCCccCCCccccc
Confidence 79999999999 8999999999999999999996 8999985
No 43
>PF08245 Mur_ligase_M: Mur ligase middle domain; InterPro: IPR013221 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) [].; GO: 0005524 ATP binding, 0009058 biosynthetic process; PDB: 3LK7_A 2XJA_A 2WTZ_A 2GCA_A 1JBW_A 1JBV_A 2GC5_A 1FGS_A 2GCB_A 2GC6_A ....
Probab=100.00 E-value=5.8e-33 Score=236.78 Aligned_cols=176 Identities=25% Similarity=0.348 Sum_probs=131.0
Q ss_pred EeCCCChHhHHHHHHHHHHhcCCCeeeccc----CcccchhhhhhcccCCCCCCCCcEEEEEeccccccc--cCceeccc
Q 020059 48 VTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEI--PNKYFCPT 121 (331)
Q Consensus 48 VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~--~~~~~~p~ 121 (331)
||||||||||++||+++|++.|..+++.|+ +|.+...... .+.+.+++|+|+|++++.. ....++|+
T Consensus 1 ITGT~GKTTTt~ml~~iL~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~V~E~~~~~~~~~~l~~~~~p~ 73 (188)
T PF08245_consen 1 ITGTNGKTTTTRMLAHILSAAGKVVGTIGNTNNQIGLPLLLLNA-------REGGADIAVLEVSEGGLGDERLSFLLKPD 73 (188)
T ss_dssp EESSSSHHHHHHHHHHHHHHTTEEEEEESSCHHHHHHHHHHHHH-------HHTTSSEEEEEESSSCCCTSTTSGGSBES
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHhhh-------cccccceeeeeccCCccccceeeeeeehh
Confidence 899999999999999999999998888887 4444333322 1346889999999985443 22237899
Q ss_pred EEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCcccc-----ccccc
Q 020059 122 VSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKID-----TEAKT 196 (331)
Q Consensus 122 i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 196 (331)
++|||||++||+++|+|+|+|+++|.++++.+++++.+|+|.|||.+.........++++|+.....++. .....
T Consensus 74 i~viTni~~dH~~~~~s~~~~~~~k~~~~~~~~~~~~~v~n~dd~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~ 153 (188)
T PF08245_consen 74 IAVITNIGPDHLDRFGSIEEYAEAKAKIFRGLKPGGVAVLNADDPELAEIAANSKCKVITFGLDNSADIRASNISYSEEG 153 (188)
T ss_dssp EEEE----SSSHCCTSSHHHHHHHHHGGHTTTSTTSEEEEETTSHHHHHHHHHHTTTEEEEESSSSSEEEEEEEEEETTE
T ss_pred eeeeceecccccccCCCHHHHHHHHHhhhhhcccceEEEecCCCHHHHHHHHhcCCcEEEeccCcccceeeeeEEEecCC
Confidence 9999999999999999999999999999999988999999999998877777777789999987544221 11112
Q ss_pred ceEEEe-cCceeEEEEeecCCCCcHHHHHHHHHHHHHHHH
Q 020059 197 ASFEVP-AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLG 235 (331)
Q Consensus 197 ~~~~~~-~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~ 235 (331)
..+.+. ..+...+ +.++++|.||++|+++|+ ++|
T Consensus 154 ~~~~i~~~~~~~~~---~~~~l~G~hn~~NalaA~--a~a 188 (188)
T PF08245_consen 154 GRFRIISYNGEEFE---IELPLPGKHNVENALAAI--AAA 188 (188)
T ss_dssp EEEEEEEETTEEEE---EEESSSSHHHHHHHHHHH--HHH
T ss_pred cEEEEEEecCceEE---EEecCCCHHHHHHHHHHH--HhC
Confidence 222211 1232233 489999999999999999 554
No 44
>KOG2525 consensus Folylpolyglutamate synthase [Coenzyme transport and metabolism]
Probab=99.97 E-value=4.2e-31 Score=243.35 Aligned_cols=253 Identities=23% Similarity=0.257 Sum_probs=179.6
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhhcc----------------cC
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFHCI----------------AL 92 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~~~----------------~~ 92 (331)
.++.+|||||||||+||++++++||++.|++++.+.+ .|.|++...+... ..
T Consensus 70 ~~l~iIHVAGTkGKGStcaF~~SILr~~g~rtG~yTSPHLl~vrErIriNGqpIS~e~F~~~f~~v~~~lk~~~~~~~~~ 149 (496)
T KOG2525|consen 70 NSLNIIHVAGTKGKGSTCAFTESILRQQGLRTGFYTSPHLLSVRERIRINGQPISEEKFTKYFWEVYERLKSTKLKEVSM 149 (496)
T ss_pred hheeEEEEecCCCCcchHHHHHHHHHhcccccccccChhhcchhheEEECCEECCHHHHHHHHHHHHHHHHHhhccccCC
Confidence 4678999999999999999999999999999854443 2445444332110 00
Q ss_pred C-------------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhccccCCCc
Q 020059 93 P-------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTK 157 (331)
Q Consensus 93 ~-------------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~ 157 (331)
+ +...++|++|+|+|. |.+|.++++-+|-++.||+|+.||++.+| |+++|+.+|++||+ ++.
T Consensus 150 p~yF~fLT~lAF~~F~~enVdvaViEvGlGG~~DaTNvI~kpvvcgITslG~DH~~~LG~tL~eIA~eKAGIfK---~gv 226 (496)
T KOG2525|consen 150 PTYFEFLTLLAFHVFVKENVDVAVIEVGLGGELDATNVIEKPVVCGITSLGLDHTSFLGNTLSEIAWEKAGIFK---EGV 226 (496)
T ss_pred CchhhhhHhhhheeeeecCCcEEEEEeccccccccccccccceEEEEeecCCchHHHHhhHHHHHHHHhccccc---cCC
Confidence 0 236789999999996 46788887778999999999999999999 99999999999998 355
Q ss_pred eEEEeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHH
Q 020059 158 LGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLD 237 (331)
Q Consensus 158 ~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~ 237 (331)
.+++....+.....+........ .......+.....+....+.+.|.||..|+..|+.++-++.
T Consensus 227 paft~~q~~e~~nvL~~ra~e~~----------------~~L~~v~p~~~~~ls~~~lgl~g~hq~~na~lA~~L~~~~~ 290 (496)
T KOG2525|consen 227 PAFTVPQPPEALNVLKERASELG----------------VPLFVVPPLEAYELSGVNLGLIGTHQWSNASLAVQLASEWL 290 (496)
T ss_pred ceEEcCCcHHHHHHHHHHHHhcC----------------CCceecCCchhhhhcCCcccccccchhhhhHHHHHHHHHHH
Confidence 55555566666665543211100 00000000000011112478899999999999984333332
Q ss_pred -------c--------C--CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC-------CC
Q 020059 238 -------I--------G--VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-------GH 293 (331)
Q Consensus 238 -------l--------g--~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-------~~ 293 (331)
. + +++. ...||+++.| |||.|++. ..++++++.|. |||++||+++.+.++ +.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~~-~l~GL~~~~w-PGR~qil~-~~~~~~~llDG-AHt~eSaea~~~w~~~~~~~~~~~ 366 (496)
T KOG2525|consen 291 IQNGRVAEGVLDALQTSGLIPPA-FLSGLASTDW-PGRLQILE-YGRGVTWLLDG-AHTKESAEACAKWFRKAVRGLKKL 366 (496)
T ss_pred HhcCcccccCCCccccccCCCHH-HhcchhhccC-CCceEEEe-cCCCcEEEecC-CCCHHHHHHHHHHHHHHhccCCCc
Confidence 0 2 4444 5569999998 99999996 34778899995 999999999876652 22
Q ss_pred c-EEEEEcCCCCCCCCccCCChhhhhhhhcc
Q 020059 294 K-CVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (331)
Q Consensus 294 ~-~i~V~G~~~~~g~~~~~~~~~~l~~~l~~ 323 (331)
+ +|++|..+.++ |...|+..+++
T Consensus 367 ~~~illfn~t~~~-------d~~~Ll~~L~~ 390 (496)
T KOG2525|consen 367 TSLILLFNCTSDR-------DPPLLLPLLKP 390 (496)
T ss_pred cceEEEEEecCCc-------chHhHhHHhcc
Confidence 2 59999999998 67788888877
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=99.17 E-value=3.7e-11 Score=89.80 Aligned_cols=66 Identities=23% Similarity=0.287 Sum_probs=49.3
Q ss_pred CCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEEcCCCCCCCCccCCChhhhhhhhcc
Q 020059 255 PPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLGGQAKVLNGQESNGFEKLIEPLNH 323 (331)
Q Consensus 255 ~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~ 323 (331)
+|||||++. ..+++.+|+| |||||+|++++++.+ +.+|+++|+|.|.++|.... ..+..+...++.
T Consensus 1 vpgR~e~v~-~~~~~~vi~D-~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~-~~~~~~~~~~~~ 70 (91)
T PF02875_consen 1 VPGRMEVVR-EPNGPTVIDD-YAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDK-DFHEEIGELAAQ 70 (91)
T ss_dssp ETTSSEEEE-EETTEEEEEE-T--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHH-HCHHHHHHHHTT
T ss_pred CCCCcEEEe-eCCCcEEEEE-CCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccH-HHHHHHHHHHHh
Confidence 389999996 4678999999 699999999998887 46899999999999665432 225566666654
No 46
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.55 E-value=0.021 Score=51.22 Aligned_cols=118 Identities=17% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec----------cc-Ccccchhhhhhc--------ccCC------
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG----------GN-LGNPLSEAAFHC--------IALP------ 93 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~----------g~-~g~~~~~~~~~~--------~~~~------ 93 (331)
.+..+|||||+ .||||...-|..-|...|++++.. |+ +|.-+-...+.. ..+.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 35679999998 579999999999999999988542 22 121111111100 0000
Q ss_pred ----------CCCCCCcEEEEEec-cccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEe
Q 020059 94 ----------SSKPKFQVAVVEVS-SYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLP 162 (331)
Q Consensus 94 ----------~~~~~~~~~VlE~~-~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n 162 (331)
....++|+.++|+. .||-+..-. -..|+.+++.+. |.-+++-..|.++++- ...+|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~-~~aDt~~~v~~p-------g~GD~~Q~iK~GimEi---aDi~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEVDIA-NMADTFLVVMIP-------GAGDDLQGIKAGIMEI---ADIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHh-hhcceEEEEecC-------CCCcHHHHHHhhhhhh---hheeeEe
Confidence 01346899999987 466553211 234776666652 2234555778888874 6689999
Q ss_pred CCChhhH
Q 020059 163 FGNQHLN 169 (331)
Q Consensus 163 ~dd~~~~ 169 (331)
..|..-.
T Consensus 198 KaD~~~A 204 (323)
T COG1703 198 KADRKGA 204 (323)
T ss_pred ccChhhH
Confidence 9886544
No 47
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.88 E-value=0.87 Score=42.17 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=65.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc-Ccccchhh-------hhhcc-----------cCC------
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEA-------AFHCI-----------ALP------ 93 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~-~g~~~~~~-------~~~~~-----------~~~------ 93 (331)
.+..+|+|+|+. ||||++..+...|+..|++++.... ...+.+.. +.+.. ...
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 356799999986 7999999999999999988864332 22222110 00000 000
Q ss_pred ----------CCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeC
Q 020059 94 ----------SSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPF 163 (331)
Q Consensus 94 ----------~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (331)
....++|+.++|+..-+-....+.-..|+.++-. ..++-+++-..|..+++. ...+|+|.
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~-------~p~~gd~iq~~k~gi~E~---aDIiVVNK 203 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSETAVAGMVDFFLLLQ-------LPGAGDELQGIKKGIMEL---ADLIVINK 203 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchhHHHHhCCEEEEEe-------cCCchHHHHHHHhhhhhh---hheEEeeh
Confidence 0123578899998743211111222346655541 123445565666666653 34788898
Q ss_pred CC
Q 020059 164 GN 165 (331)
Q Consensus 164 dd 165 (331)
-|
T Consensus 204 aD 205 (332)
T PRK09435 204 AD 205 (332)
T ss_pred hc
Confidence 77
No 48
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.93 E-value=0.64 Score=33.65 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=24.4
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 46 I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
|.++|. .||||++..+...|++.|+++...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~ 33 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLI 33 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 556655 699999999999999999887443
No 49
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=92.69 E-value=0.32 Score=40.05 Aligned_cols=38 Identities=24% Similarity=0.335 Sum_probs=31.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecccCcc
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGN 80 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~~g~ 80 (331)
+++++|+|.+ ||||+.+=|-..|++.|+++++.-..+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh 41 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHH 41 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence 5799999974 9999999999999999999965544333
No 50
>PRK15453 phosphoribulokinase; Provisional
Probab=92.30 E-value=0.22 Score=44.83 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=24.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcC
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g 69 (331)
++.++|+|||+. ||||++..++++|+..+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~ 33 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRREN 33 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 467899999985 79999999999997554
No 51
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=92.23 E-value=0.2 Score=44.74 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=25.8
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|. |-.||||++.-|++.|...|+++.+
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVll 34 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMI 34 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEE
Confidence 344444 8889999999999999999998864
No 52
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=92.23 E-value=0.17 Score=44.24 Aligned_cols=33 Identities=18% Similarity=0.406 Sum_probs=29.3
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+|+|+|.-||||+..-|..-|+..|+++.+..+
T Consensus 1 vi~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTT 33 (232)
T TIGR03172 1 VIAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTT 33 (232)
T ss_pred CEEEEcCCcHHHHHHHHHHHHHHCCCeEEEECC
Confidence 589999999999999999999999999865444
No 53
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=91.37 E-value=0.29 Score=43.97 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.4
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++|+|+ |-.|||||+.-|+..|.+.|+++.+.
T Consensus 2 ~~iav~gKGGVGKTT~a~nLA~~La~~G~rVllv 35 (273)
T PRK13232 2 RQIAIYGKGGIGKSTTTQNLTAALSTMGNKILLV 35 (273)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEE
Confidence 567777 66799999999999999999998653
No 54
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=91.31 E-value=0.3 Score=42.03 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.3
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|+ |-.||||++.-|++.|.+.|+++.+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLl 33 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQ 33 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEE
Confidence 45666 6678999999999999999998854
No 55
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=90.69 E-value=0.37 Score=41.86 Aligned_cols=31 Identities=35% Similarity=0.483 Sum_probs=28.1
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++.+.||||. |||.+++.|.+.|+++|+++.
T Consensus 2 ~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~ 35 (223)
T COG0132 2 MKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVA 35 (223)
T ss_pred CceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeE
Confidence 4688999996 999999999999999999875
No 56
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=90.51 E-value=0.41 Score=41.99 Aligned_cols=31 Identities=26% Similarity=0.305 Sum_probs=26.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.||||++..|+..|...|+++.+
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~Vll 35 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVAL 35 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence 567776 6678999999999999999999864
No 57
>PHA02518 ParA-like protein; Provisional
Probab=90.40 E-value=0.41 Score=40.86 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=25.2
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|+ |-.||||++..|++.|...|+++.+
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vll 34 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLL 34 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 45555 6778999999999999999998854
No 58
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=90.35 E-value=0.41 Score=45.69 Aligned_cols=34 Identities=29% Similarity=0.473 Sum_probs=30.0
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.++|+|+ |-.|||||+.-|++.|...|+++.++
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 45899999 88899999999999999999998653
No 59
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=90.29 E-value=0.4 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=30.2
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~V----tGT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
..|+|.| .|-.|||+++.+|...|++.|+++++.
T Consensus 48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~il 85 (325)
T PRK00652 48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVV 85 (325)
T ss_pred CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 5689999 799999999999999999999998643
No 60
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=90.23 E-value=0.43 Score=42.88 Aligned_cols=31 Identities=29% Similarity=0.333 Sum_probs=26.4
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.|||||+.-|++.|...|+++.+
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLl 34 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMV 34 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEE
Confidence 567776 6667999999999999999999864
No 61
>PRK10037 cell division protein; Provisional
Probab=90.20 E-value=0.43 Score=42.23 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=27.3
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++|+|. |-.||||++.-|++.|.+.|+++.+.
T Consensus 2 ~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred cEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 577777 67789999999999999999998643
No 62
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=90.19 E-value=0.66 Score=41.61 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.8
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+..++|+|| |--||||++..|+..|...|+++.+
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~Vll 137 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLL 137 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 467899999 6779999999999999999988854
No 63
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=90.03 E-value=0.46 Score=45.04 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=30.4
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.-
T Consensus 105 ~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 105 NPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 46799999 888999999999999999999985543
No 64
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=89.93 E-value=0.37 Score=41.55 Aligned_cols=32 Identities=34% Similarity=0.534 Sum_probs=28.3
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++|.|| |-.|||||++-|...|...|+++.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~li 37 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLI 37 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEE
Confidence 578888 78899999999999999999998653
No 65
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.87 E-value=0.34 Score=41.13 Aligned_cols=27 Identities=37% Similarity=0.664 Sum_probs=23.8
Q ss_pred EEEEeC--CCChHhHHHHHHHHHHhcCCC
Q 020059 45 ILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 45 ~I~VtG--T~GKTTt~~~l~~iL~~~g~~ 71 (331)
+|+|+| ..||||++..|...|.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 688987 469999999999999988866
No 66
>COG4240 Predicted kinase [General function prediction only]
Probab=89.75 E-value=0.54 Score=40.81 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=38.5
Q ss_pred HHHcCCeeeeHHHHHHhhCCCCCcEEEEeCC--CChHhHHHHHHHHHHhcC-CCeee
Q 020059 21 LLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEAFV 74 (331)
Q Consensus 21 a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g-~~~~~ 74 (331)
+.+.-+|.+.+++-.++-. .+.-+++|.|. +||||++..|..+|.+.| ++++.
T Consensus 29 ~~dl~Lpll~Kiap~~qe~-grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~ 84 (300)
T COG4240 29 AQDLHLPLLAKIAPWAQER-GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTAT 84 (300)
T ss_pred HHHHHHHHHHhhhhhhhhc-CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEE
Confidence 4555566655555554444 35669999997 689999999999999998 56643
No 67
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.71 E-value=0.51 Score=41.36 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=27.2
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++|+|+ |-.||||++.-|++.|...|+++.+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~Vlli 36 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAI 36 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEE
Confidence 577776 57799999999999999999998643
No 68
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=89.59 E-value=0.51 Score=44.80 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 105 ~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlI 141 (388)
T PRK13705 105 FPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLV 141 (388)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEE
Confidence 46899999 88999999999999999999998554
No 69
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=89.58 E-value=0.78 Score=39.09 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=28.5
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+.++|+|+++ .||||++..|+..|...|+++.+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVll 51 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLL 51 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 35789999944 47999999999999999988754
No 70
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=89.57 E-value=0.52 Score=41.19 Aligned_cols=33 Identities=21% Similarity=0.394 Sum_probs=28.8
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+++|+|+| -.||||++.-|...|+..|+++++.
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~vi 35 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATA 35 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEE
Confidence 46899999 7899999999999999999998655
No 71
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=89.55 E-value=0.49 Score=42.61 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=26.4
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|. |-.|||||+.-|++.|...|+++.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLl 34 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLV 34 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEE
Confidence 466666 6779999999999999999998854
No 72
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=89.36 E-value=0.28 Score=47.74 Aligned_cols=122 Identities=22% Similarity=0.205 Sum_probs=72.5
Q ss_pred cCChHHHHHHHcCCee-eeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe-eecccCcccchhhhhhcc
Q 020059 13 LKATGLACLLQSGKRV-MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-FVGGNLGNPLSEAAFHCI 90 (331)
Q Consensus 13 ~~~p~~~~a~~~g~~~-l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~-~~~g~~g~~~~~~~~~~~ 90 (331)
..+-....|.+.|.-+ ..+.+. .......++|.|+||+||++++++..+.+.....++ +..|+.|..-....+...
T Consensus 35 ~g~~~~~~a~~~Gavav~~~~~~--~~~~~~~~vi~V~~~~~~~~~~a~~~y~~ps~~l~vigvTGTNgKTt~t~~~~~~ 112 (475)
T COG0769 35 DGHDFIAGAIAPGAVAVVVEKDI--KLAEAGVPVIVVTGTNGKLTTLALAFYGLPSGKLKVIGVTGTNGKTTTTSLLAQI 112 (475)
T ss_pred ccccchHhHhhCCCEEEEecccc--cccccCCCEEEEcCcHHHHHHHHHHhccCcccCceEEEEcCCCcHHHHHHHHHHH
Confidence 4455556677777543 344433 222234569999999999999999999998754443 444655543222221111
Q ss_pred cCCCCCCCCcEEEEEeccc---cccccCceecccEEEEecCChhhhhccCC
Q 020059 91 ALPSSKPKFQVAVVEVSSY---QMEIPNKYFCPTVSVVLNLTPDHLERHKT 138 (331)
Q Consensus 91 ~~~~~~~~~~~~VlE~~~~---~~~~~~~~~~p~i~viTni~~dHl~~~gt 138 (331)
.. .....+.++..|..+. ..+ ......|+...++|+..|++|..++
T Consensus 113 ~~-~~g~~~~~~gT~g~~~~~~~~~-~~~~tTP~~~~l~~~~~~~~d~~~e 161 (475)
T COG0769 113 LK-KLGKKTALIGTEGDELSPGILE-PTGLTTPEALDLQNLLRDLLDRGAE 161 (475)
T ss_pred HH-hcCCceEEEEEEeeeccCCccc-ccCCCCccHHHHHHHHHHHHHcCCc
Confidence 11 1123344556555432 222 2224689999999999999988764
No 73
>COG2403 Predicted GTPase [General function prediction only]
Probab=89.13 E-value=0.45 Score=44.11 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=29.0
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
..|+|+|||| .|||++++++.++|++.|+++.
T Consensus 125 ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~ 159 (449)
T COG2403 125 EKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVC 159 (449)
T ss_pred cCceEEEEEeccccchhHHHHHHHHHHHHcCCceE
Confidence 5689999998 5999999999999999999974
No 74
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=88.83 E-value=0.63 Score=44.14 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=29.3
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.++|+|+ |-.|||||+.-|++.|...|+++.+.
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlI 139 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAI 139 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 45789988 77899999999999999999998643
No 75
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=88.79 E-value=0.63 Score=41.61 Aligned_cols=31 Identities=32% Similarity=0.403 Sum_probs=26.3
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.|||||+.-|++.|...|+++.+
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLl 35 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQ 35 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 466665 7789999999999999999999854
No 76
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=88.64 E-value=0.63 Score=41.54 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=24.8
Q ss_pred EEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 46 I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|+|+ |-.||||++.-|++.|...|+++.+
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvll 33 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQ 33 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4554 6779999999999999999999864
No 77
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=88.26 E-value=0.74 Score=41.45 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.8
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+++|+|+| ..||||.+.-|...|++.| ++++.
T Consensus 1 M~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~I 34 (274)
T PRK14493 1 MKVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTV 34 (274)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEE
Confidence 46899999 8899999999999999999 67543
No 78
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=88.24 E-value=0.69 Score=42.17 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.2
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|. |--|||||+.-|++.|.+.|+++.+
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLl 33 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQ 33 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 44444 7789999999999999999999854
No 79
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=88.01 E-value=0.86 Score=41.38 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+...+|||+|.+ ||||++.+|..+|+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~ 88 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSR 88 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345799999987 799999999999985
No 80
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=87.94 E-value=0.66 Score=41.46 Aligned_cols=28 Identities=32% Similarity=0.559 Sum_probs=23.3
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
+|+|||+. ||||++.-+.++|+..|.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v 30 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHP 30 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCce
Confidence 58999975 79999999999998776543
No 81
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=87.72 E-value=0.81 Score=41.68 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=28.4
Q ss_pred CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++++|+|. |--|||||+.-|+..|.+.|+++.+.
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLli 38 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIV 38 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45677776 66789999999999999999998654
No 82
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=87.65 E-value=0.98 Score=37.13 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+++|+|+| -.||||....|...|...|++++..
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~i 35 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVI 35 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 36899998 5799999999999999999987543
No 83
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=87.36 E-value=1 Score=38.65 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=28.1
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHh-cCCCeee
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH-LGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~-~g~~~~~ 74 (331)
...++|+|+ |-.||||++..|++.|.. .|+++.+
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLl 70 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLL 70 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 357899999 677999999999999986 6887743
No 84
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=87.35 E-value=0.83 Score=40.32 Aligned_cols=31 Identities=29% Similarity=0.566 Sum_probs=26.4
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.||||++.-|+..|...|+++.+
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vll 35 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVL 35 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEE
Confidence 567776 5678999999999999999998864
No 85
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=87.24 E-value=0.98 Score=41.78 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=30.0
Q ss_pred CCCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++.++|.|+ |..||||++.-|+..|.+.|+++.+.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 467788888 57899999999999999999998654
No 86
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=87.22 E-value=0.82 Score=41.01 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.5
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|. |-.||||++.-|++.|...|+++.+
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~Vll 33 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMI 33 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45555 6789999999999999999998854
No 87
>PRK11670 antiporter inner membrane protein; Provisional
Probab=87.16 E-value=0.91 Score=42.77 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=29.2
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
-.++|+|+ |-.|||||+.-|+..|.+.|+++.+
T Consensus 106 ~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlL 141 (369)
T PRK11670 106 VKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGI 141 (369)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 34789998 7789999999999999999999864
No 88
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=86.92 E-value=1.4 Score=42.11 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=29.8
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+++|+|+| -.||||...-|-..|+..|++++++-
T Consensus 1 MkVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIK 36 (452)
T PRK14495 1 MRVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVK 36 (452)
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 47899999 77999999999999999999997643
No 89
>PRK14974 cell division protein FtsY; Provisional
Probab=86.57 E-value=1.1 Score=41.50 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|.++|.+ |||||...+++.|...|.++.+..
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~ 175 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAA 175 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 35688899876 799999999999999998876543
No 90
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=86.57 E-value=1 Score=36.11 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=24.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|+|+|.|- .||||.++.|-.-|...|++++.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ 33 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAV 33 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEE
Confidence 57788875 59999999999999999999864
No 91
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=86.23 E-value=0.74 Score=40.59 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.3
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++++.|-.||||++.-|++.|+..|++|..
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G~~Vla 35 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLGESVLA 35 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 455557789999999999999999998753
No 92
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=86.19 E-value=1.1 Score=40.30 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.3
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHh-cCCCeeec
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNH-LGIEAFVG 75 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~-~g~~~~~~ 75 (331)
++|+|+ |-.|||||+.-|++.|.. .|+++.+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLli 37 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIH 37 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEe
Confidence 566666 667899999999999997 69998654
No 93
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=85.89 E-value=1.1 Score=39.18 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=25.3
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|+ |-.||||++.-|++.|...|+++.+
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~Vll 34 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLA 34 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45555 7789999999999999999998865
No 94
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=85.80 E-value=0.6 Score=41.60 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=24.7
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|. |-.|||||+.-|++.|...| ++.+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLl 34 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLV 34 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEE
Confidence 455555 77899999999999999999 8753
No 95
>PRK13236 nitrogenase reductase; Reviewed
Probab=85.72 E-value=1.3 Score=40.41 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=28.1
Q ss_pred CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++++|.|. |-.|||||+.-|++.|.+.|+++.+
T Consensus 5 ~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLl 39 (296)
T PRK13236 5 NIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILI 39 (296)
T ss_pred CceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEE
Confidence 55677776 5679999999999999999999865
No 96
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=85.64 E-value=0.73 Score=38.20 Aligned_cols=26 Identities=38% Similarity=0.681 Sum_probs=20.1
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.|+||||- ||||++..|+ ..|+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~----~lg~~~i 28 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR----ELGYKVI 28 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH----HhCCcee
Confidence 368999995 7999998887 4466663
No 97
>PRK07667 uridine kinase; Provisional
Probab=85.61 E-value=2 Score=36.40 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=26.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+|+|+|- .||||++..|...|...|.++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~ 48 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPF 48 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 4579999985 689999999999999887765
No 98
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=85.57 E-value=0.84 Score=38.93 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=22.8
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+||-|| .|||||..=|++-++..|.++.+..
T Consensus 6 lvGptG-vGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 6 LVGPTG-VGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEESTT-SSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EECCCC-CchHhHHHHHHHHHhhccccceeec
Confidence 445555 4899999999999998898886544
No 99
>PRK00784 cobyric acid synthase; Provisional
Probab=85.55 E-value=0.99 Score=44.22 Aligned_cols=30 Identities=40% Similarity=0.479 Sum_probs=26.4
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.|.|||| .|||+++..|.+.|++.|++++
T Consensus 3 ~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~ 35 (488)
T PRK00784 3 KALMVQGTASDAGKSTLVAGLCRILARRGYRVA 35 (488)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEe
Confidence 56888888 7999999999999999998764
No 100
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.49 E-value=1.3 Score=40.72 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=28.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|++.|.| |||||+..|+..++..|.++.+.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35677777765 799999999999999988886654
No 101
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.46 E-value=1.2 Score=40.84 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=28.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+..+|.+.|.| |||||..=|++.|++.|+++.+.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~Vlla 173 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLA 173 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEE
Confidence 45677788877 69999999999999999998653
No 102
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=85.26 E-value=1.1 Score=36.84 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.8
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|-.||||++.-|+..|.+.|+++.+
T Consensus 9 gG~GKTt~a~~LA~~la~~g~~vll 33 (169)
T cd02037 9 GGVGKSTVAVNLALALAKLGYKVGL 33 (169)
T ss_pred CcCChhHHHHHHHHHHHHcCCcEEE
Confidence 7789999999999999999999864
No 103
>CHL00175 minD septum-site determining protein; Validated
Probab=85.25 E-value=1.4 Score=39.59 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=28.2
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..++|+|+ |-.||||++.-|++.|...|+++.+
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vll 49 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVAL 49 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEE
Confidence 45788888 4568999999999999999998864
No 104
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.18 E-value=1.4 Score=38.42 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.0
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
++|.+. |-.||||...+|+..|.+.|.++.++-
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lID 37 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALID 37 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 455554 778999999999999999999886643
No 105
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.10 E-value=1.4 Score=39.61 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=28.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+.++|.++|.+ |||||+.-|+..|...|+++.+..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45788888764 799999999999999998886544
No 106
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=85.06 E-value=1 Score=37.69 Aligned_cols=30 Identities=23% Similarity=0.375 Sum_probs=24.3
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+.+.-|-.||||++..|+..|...|+++.+
T Consensus 3 v~~~kGG~GKTt~a~~la~~la~~g~~Vll 32 (195)
T PF01656_consen 3 VTSGKGGVGKTTIAANLAQALARKGKKVLL 32 (195)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTTS-EEE
T ss_pred EEcCCCCccHHHHHHHHHhccccccccccc
Confidence 344457789999999999999999999854
No 107
>PRK10818 cell division inhibitor MinD; Provisional
Probab=85.05 E-value=1.3 Score=39.46 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=26.3
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.||||++.-|++.|...|+++.+
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vll 36 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 567776 6678999999999999999988754
No 108
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.99 E-value=1.4 Score=39.06 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=23.4
Q ss_pred EEEeCCCChHhHHHHHHHHHH-hcCCCeee
Q 020059 46 LAVTGTNGKSTVVTFVGQMLN-HLGIEAFV 74 (331)
Q Consensus 46 I~VtGT~GKTTt~~~l~~iL~-~~g~~~~~ 74 (331)
...-|-.|||||+..|++.|. ..|+++.+
T Consensus 8 ~n~KGGvGKTT~a~nLa~~La~~~~~kVLl 37 (259)
T COG1192 8 ANQKGGVGKTTTAVNLAAALAKRGGKKVLL 37 (259)
T ss_pred EecCCCccHHHHHHHHHHHHHHhcCCcEEE
Confidence 334488899999999999999 56688754
No 109
>PRK06696 uridine kinase; Validated
Probab=84.83 E-value=2.2 Score=36.96 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+..+|+|+|- .||||++..|+..|...|.++..
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~ 55 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIR 55 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 45679999974 68999999999999988766543
No 110
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=84.68 E-value=1.4 Score=36.99 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=23.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+|+|+|. .||||.+..|...|...|.++.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~ 31 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPV 31 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 4778876 5899999999999998776653
No 111
>PRK05439 pantothenate kinase; Provisional
Probab=84.63 E-value=1.9 Score=39.53 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=26.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc--CCCeee
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL--GIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~--g~~~~~ 74 (331)
....+|+|||+. ||||++..|..+|... |.++.+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~v 121 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVEL 121 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEE
Confidence 345699999985 6999999999999764 444433
No 112
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=84.56 E-value=1.1 Score=39.11 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=31.0
Q ss_pred eeeHHHHHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059 28 VMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 28 ~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~ 71 (331)
+..++..+.+.. .+..+|+|+|-+ ||||.+..|...|+..+..
T Consensus 19 l~~~~~~~~~~~-~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~ 63 (229)
T PRK09270 19 LLRRLAALQAEP-QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL 63 (229)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence 344444444433 466799999986 6999999999999976543
No 113
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.28 E-value=1.4 Score=36.08 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=25.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+|+|+|. .||||+...|...|+..|++++..-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3567664 5899999999999999999986544
No 114
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=84.21 E-value=2.1 Score=38.27 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=27.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~ 71 (331)
+..-+|||+||- ||+||++.+..+|+..+..
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 345699999995 8999999999999998776
No 115
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=83.64 E-value=1.9 Score=35.98 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=28.8
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
..++++|+| -.||||...-|...|...|++++..-
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik 41 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEE
Confidence 567999999 46899999999999999898885443
No 116
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=83.63 E-value=1.6 Score=38.09 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=26.0
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 45 ~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.+-|||| .|||+++..|.+.|++.|++++.+
T Consensus 4 ~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~ 37 (231)
T PRK12374 4 RFFITGTDTSVGKTVVSRALLQALASQGKTVAGY 37 (231)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4667666 799999999999999999988543
No 117
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=83.37 E-value=2.5 Score=33.52 Aligned_cols=44 Identities=23% Similarity=0.291 Sum_probs=31.8
Q ss_pred EEeCC-CChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEecc
Q 020059 47 AVTGT-NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSS 108 (331)
Q Consensus 47 ~VtGT-~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~ 108 (331)
.|||+ .|||+++.-+...|++.|.+++..- | ...+|+.++|-..
T Consensus 4 ~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~k----p--------------~~~~d~vliEGaG 48 (134)
T cd03109 4 FGTGTDIGKTVATAILARALKEKGYRVAPLK----P--------------VQTYDFVLVEGAG 48 (134)
T ss_pred EeCCCCcCHHHHHHHHHHHHHHCCCeEEEEe----c--------------CCCCCEEEEECCC
Confidence 34443 6999999999999999999884332 1 1126889999763
No 118
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=82.89 E-value=1.7 Score=37.75 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.8
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+|||+|.+ ||||++..|...|+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence 47888875 799999999999985
No 119
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=82.71 E-value=2.7 Score=37.32 Aligned_cols=115 Identities=17% Similarity=0.196 Sum_probs=59.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeeccc-Ccccchh-----hhh--hc-----------ccCC------
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSE-----AAF--HC-----------IALP------ 93 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~-~g~~~~~-----~~~--~~-----------~~~~------ 93 (331)
.+..+|||||+- ||||...-|...|.+.|++++...- -.+|++. .+. .. ..+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 366899999985 7999999999999999999864221 1112111 110 00 0000
Q ss_pred ----------CCCCCCcEEEEEec-cccccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 94 ----------SSKPKFQVAVVEVS-SYQMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 94 ----------~~~~~~~~~VlE~~-~~~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
....++|+.++|+- .||-+..-. ....-+.|++.=.-|-+. ..|+++++- ...+|+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ---------~~KaGimEi---aDi~vV 174 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQ---------AIKAGIMEI---ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCC---------TB-TTHHHH----SEEEE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHH---------HHhhhhhhh---ccEEEE
Confidence 01246899999986 466543211 122244555554445443 346677663 457899
Q ss_pred eCCChh
Q 020059 162 PFGNQH 167 (331)
Q Consensus 162 n~dd~~ 167 (331)
|..|..
T Consensus 175 NKaD~~ 180 (266)
T PF03308_consen 175 NKADRP 180 (266)
T ss_dssp E--SHH
T ss_pred eCCChH
Confidence 987743
No 120
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=82.64 E-value=3.1 Score=37.98 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+.++|.|-|| .||=||+..|...+++.|++++..++
T Consensus 147 ~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaT 185 (339)
T COG3367 147 DAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVAT 185 (339)
T ss_pred CCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEec
Confidence 5679999999 49999999999999999999865443
No 121
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=82.59 E-value=4 Score=34.04 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=31.5
Q ss_pred eHHHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhcCCC
Q 020059 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 30 ~~~~~~~~~~~~~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~ 71 (331)
+..+...++. +...+|.++| ..||||++..|...|...|..
T Consensus 6 ~~~~~~~~~~-~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~ 48 (184)
T TIGR00455 6 TKDERQALNG-HRGVVIWLTGLSGSGKSTIANALEKKLESKGYR 48 (184)
T ss_pred CHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3444445554 4678999999 889999999999999877654
No 122
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=82.32 E-value=1.7 Score=37.94 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=21.5
Q ss_pred EEEEe--CCCChHhHHHH-HHHHHHhcCCCe
Q 020059 45 ILAVT--GTNGKSTVVTF-VGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~Vt--GT~GKTTt~~~-l~~iL~~~g~~~ 72 (331)
.|+|| |-.||||.+++ +..+++..|+.+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~V 32 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNV 32 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceE
Confidence 57888 67899999999 666666665554
No 123
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=82.29 E-value=1.8 Score=36.77 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.2
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+.|-|||| .|||+++..|.+.|++.|.+++.
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~ 34 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGY 34 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 35678887 59999999999999999998854
No 124
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=82.28 E-value=1.3 Score=39.44 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=23.2
Q ss_pred eCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
-|-.|||||+.-|++.|...|+++.+
T Consensus 8 KGGVGKTT~~~nLA~~La~~g~rVLl 33 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAFAKLGKRVLQ 33 (268)
T ss_pred CCcCcHHHHHHHHHHHHHhCCCeEEE
Confidence 37889999999999999999999854
No 125
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=82.01 E-value=2.1 Score=39.25 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=30.0
Q ss_pred CCcEEEEe----CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~Vt----GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
..|+|.|. |-.|||.++.+|...|++.|+++++.
T Consensus 27 ~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~Il 64 (311)
T TIGR00682 27 PVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVL 64 (311)
T ss_pred CCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEE
Confidence 57899885 88999999999999999999998543
No 126
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=81.72 E-value=1.7 Score=35.72 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.7
Q ss_pred EEeCCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 47 AVTGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 47 ~VtGT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.-.|-.||||++..|+..|...|+++.+.
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllv 34 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLI 34 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 34578899999999999999999998654
No 127
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=81.70 E-value=2.5 Score=37.88 Aligned_cols=33 Identities=36% Similarity=0.498 Sum_probs=28.9
Q ss_pred CCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..++|+|| |--|||||+..|+..|.+.|+++++
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVll 91 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLL 91 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 46788888 6678999999999999999999964
No 128
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=80.98 E-value=2.4 Score=37.92 Aligned_cols=31 Identities=32% Similarity=0.319 Sum_probs=27.5
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+|.|+ |-.|||||+..|+..|...|.++++
T Consensus 48 ~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vgl 81 (300)
T KOG3022|consen 48 HIILVLSGKGGVGKSTVTVNLALALASEGKKVGL 81 (300)
T ss_pred eEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEE
Confidence 578887 8899999999999999999998864
No 129
>PRK03846 adenylylsulfate kinase; Provisional
Probab=80.63 E-value=4.8 Score=34.11 Aligned_cols=42 Identities=26% Similarity=0.276 Sum_probs=31.5
Q ss_pred eHHHHHHhhCCCCCcEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 30 SELDFAAQVIPRSIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 30 ~~~~~~~~~~~~~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+...+.- .+..+|.++| -.||||++..|...|...|..+
T Consensus 12 ~~~~~~~~~~-~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~ 55 (198)
T PRK03846 12 TKAQREQLHG-HKGVVLWFTGLSGSGKSTVAGALEEALHELGVST 55 (198)
T ss_pred CHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 3444444443 5678999999 7899999999999998776543
No 130
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=80.60 E-value=1.7 Score=39.51 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=24.7
Q ss_pred EEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 46 I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|+|+ |-.|||||+.-|++.|...|+++.+
T Consensus 3 ia~~gKGGVGKTTta~nLA~~La~~G~rVLl 33 (290)
T CHL00072 3 LAVYGKGGIGKSTTSCNISIALARRGKKVLQ 33 (290)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 4444 7789999999999999999999854
No 131
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=80.45 E-value=2.2 Score=41.37 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=26.9
Q ss_pred CcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++.|.||||. |||+++..|...|++.|+++..
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~ 37 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQP 37 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcce
Confidence 5678888775 5999999999999999988743
No 132
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=80.43 E-value=2.5 Score=37.29 Aligned_cols=30 Identities=33% Similarity=0.412 Sum_probs=24.1
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|.|+ |-.|||||+.=|+-.|...|+++++
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~ 34 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGL 34 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 45665 7789999999999999999999964
No 133
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.91 E-value=3.8 Score=38.43 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=25.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
..+|-..|- .|||||+.=+++-++..|+++.+.
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~Lv 135 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALV 135 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEE
Confidence 345555553 479999999999999999998653
No 134
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=78.99 E-value=2 Score=37.13 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.0
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhc
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHL 68 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~ 68 (331)
..+|||+| ..||||++..|...|...
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46999997 469999999999999744
No 135
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=78.73 E-value=3 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=34.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccc
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~ 109 (331)
+.+--|..||||++.-++..|.+.|.++.+... +..+|+.|+.++.+
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~------------------d~~~d~viiD~p~~ 50 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDL------------------DPQYDYIIIDTPPS 50 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC------------------CCCCCEEEEeCcCC
Confidence 344557889999999999999988877643321 22367889998854
No 136
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=78.46 E-value=2.9 Score=36.05 Aligned_cols=28 Identities=36% Similarity=0.381 Sum_probs=23.4
Q ss_pred EEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 47 AVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 47 ~VtGT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.|||| .|||+++..|.+.|++.|++++.
T Consensus 3 ~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~ 33 (222)
T PRK00090 3 FVTGTDTDVGKTVVTAALAQALREAGYSVAG 33 (222)
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHcCCceEE
Confidence 44544 69999999999999999998754
No 137
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=78.19 E-value=3.2 Score=39.05 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=30.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+.++|+|+|. .||||...-|-..|++.|++++....
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh 241 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKH 241 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEE
Confidence 4689999994 69999999999999999999865543
No 138
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=77.90 E-value=3.5 Score=38.29 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=29.3
Q ss_pred CCcEEEEe----CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~Vt----GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..|+|.|. |-.|||-++.+|...|++.|+++++
T Consensus 55 pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~I 91 (338)
T PRK01906 55 GVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGV 91 (338)
T ss_pred CCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEE
Confidence 56889884 8999999999999999999999854
No 139
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=77.85 E-value=5.8 Score=37.80 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=22.7
Q ss_pred EEEeCC---CChHhHHHHHHHHHHhcCCCe
Q 020059 46 LAVTGT---NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 46 I~VtGT---~GKTTt~~~l~~iL~~~g~~~ 72 (331)
|.|+|| .||||+|.-|-..|+..|+++
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~rg~~V 32 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRRGLKV 32 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhcCCcc
Confidence 456665 599999999999999998776
No 140
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=77.55 E-value=3.1 Score=39.56 Aligned_cols=106 Identities=11% Similarity=0.086 Sum_probs=55.7
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhcCCCeeeccc-CcccchhhhhhcccCCCCCCCCcEEEEEeccc-------cccc
Q 020059 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN-LGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-------QMEI 113 (331)
Q Consensus 44 ~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~-------~~~~ 113 (331)
.+|-..| -.|||||+.=|+.-|+..|+++.+.+. .-.|-....+..+. .+-+++++-.+.+.. +++.
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La---~q~~v~~f~~~~~~~Pv~Iak~al~~ 177 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLA---EQVGVPFFGSGTEKDPVEIAKAALEK 177 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHH---HHcCCceecCCCCCCHHHHHHHHHHH
Confidence 4454444 269999999999999999999976543 33333322221110 111222222211111 1111
Q ss_pred cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCce
Q 020059 114 PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKL 158 (331)
Q Consensus 114 ~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~ 158 (331)
... -..|+.|+=.-|+.|+| |+..++-..|-+.+.|.-+
T Consensus 178 ak~-~~~DvvIvDTAGRl~id-----e~Lm~El~~Ik~~~~P~E~ 216 (451)
T COG0541 178 AKE-EGYDVVIVDTAGRLHID-----EELMDELKEIKEVINPDET 216 (451)
T ss_pred HHH-cCCCEEEEeCCCccccc-----HHHHHHHHHHHhhcCCCeE
Confidence 111 12378888777887776 5555555555555555443
No 141
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=77.48 E-value=3.9 Score=37.65 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=40.0
Q ss_pred CChHHHHHHHcCCe-eeeHH-------HHHHhhC---CCCCcEEEEeC---CCChHhHHHHHHHHHHhcCCCeee
Q 020059 14 KATGLACLLQSGKR-VMSEL-------DFAAQVI---PRSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 14 ~~p~~~~a~~~g~~-~l~~~-------~~~~~~~---~~~~~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+...+..|...|.. ++..+ +.+.+.. ....++|+|+| -.||||++.-|+..|...|+++.+
T Consensus 53 ~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~~~~~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlL 127 (322)
T TIGR03815 53 GGALWRAAAAVGAEHVAVLPEAEGWLVELLADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLL 127 (322)
T ss_pred CHHHHHHHHHhChhheeeCCCCHHHHHHHHHhhccCCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 44455667776766 44211 1222221 23568999885 458999999999999999988754
No 142
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=77.34 E-value=3.3 Score=34.08 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=26.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.--|+|||. .||||.+.-++..|+..|+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 347999997 579999999999999999887
No 143
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=76.78 E-value=3.2 Score=32.05 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
|..||||++..+++.|.+.|+++....
T Consensus 8 gG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 8 GGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 678999999999999999998875433
No 144
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=76.50 E-value=3.9 Score=37.83 Aligned_cols=34 Identities=21% Similarity=0.504 Sum_probs=30.0
Q ss_pred CCCcEEEEe----CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVT----GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt----GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
...|+|.|. |-.|||-++.+|...|++.|+++++
T Consensus 33 ~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~I 70 (326)
T PF02606_consen 33 LPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAI 70 (326)
T ss_pred CCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEE
Confidence 367899884 8999999999999999999999854
No 145
>PRK00889 adenylylsulfate kinase; Provisional
Probab=76.36 E-value=4.7 Score=33.30 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
++..+|.++|. .||||++..|+..|...|.++
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v 35 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPV 35 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 35678999985 589999999999998877554
No 146
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=76.16 E-value=2.6 Score=34.21 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
..|-|-||||- ||||++..|+..+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 35678999995 79999999996553
No 147
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=76.10 E-value=2.3 Score=40.31 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=22.5
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHh----cCCCeeecc
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNH----LGIEAFVGG 76 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~----~g~~~~~~g 76 (331)
.+|.+.|. .|||||+.-|++.+.. .|.++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit 213 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIIT 213 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence 45555544 4899999999988874 466665443
No 148
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=76.01 E-value=3.3 Score=40.10 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.3
Q ss_pred eCC-CChHhHHHHHHHHHHhcCCCeee
Q 020059 49 TGT-NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 49 tGT-~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|+| .|||+++.-|...|++.|+++..
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~ 33 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQP 33 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeE
Confidence 444 79999999999999999998754
No 149
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=75.88 E-value=4.4 Score=32.58 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=24.5
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|+|+|+| ..||||++.-++..|.+.|.++.+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vll 34 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLL 34 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEE
Confidence 4566665 679999999999999999977643
No 150
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=75.73 E-value=4.6 Score=36.96 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=27.0
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
++|-++ |-.||||++..++--+...|+++.+.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~ 37 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVST 37 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEES
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeec
Confidence 445555 7899999999999999999999866554
No 151
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=75.71 E-value=2.8 Score=35.91 Aligned_cols=30 Identities=33% Similarity=0.572 Sum_probs=22.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+.+||+||. .||||++.+++. .|+.+...+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~----~G~~vidaD 33 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE----LGFPVIDAD 33 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH----cCCeEEEcc
Confidence 468999996 789999887765 566664333
No 152
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=75.39 E-value=5.7 Score=32.51 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
..+|-+||. .||||.+..|..-|.+.|.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~ 34 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVY 34 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 357888886 4899999999999999998874
No 153
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=75.33 E-value=5.2 Score=38.42 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=28.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
..+|.++|- .|||||+.-|+..|+..|+++.+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 467888875 5899999999999999999886544
No 154
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=75.27 E-value=5.5 Score=41.14 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=30.3
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
...++|.||++. ||||++.-|+..|...|+++.+.
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlI 566 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 566 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 466899999866 99999999999999999988543
No 155
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=75.13 E-value=1.8 Score=36.52 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=22.7
Q ss_pred CCCcEEEEeCCCChHhH--HHHHHHHHHhcCCCe
Q 020059 41 RSIKILAVTGTNGKSTV--VTFVGQMLNHLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt--~~~l~~iL~~~g~~~ 72 (331)
.+.|+|+||||+|-+|| +.-...+++....+.
T Consensus 3 aKhPiIavTGSSGAGTTTts~aFrKiF~~~~I~a 36 (289)
T COG3954 3 AKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHA 36 (289)
T ss_pred CCCceEEEecCCCCCcccHHHHHHHHHHhcCccH
Confidence 36789999999986554 455567777765543
No 156
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=74.90 E-value=3.3 Score=31.65 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=17.3
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+|+|+|. .||||++..|+.-+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 4677775 58999999999877
No 157
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=74.37 E-value=4.3 Score=37.39 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=29.0
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~V----tGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..|+|.| .|-+|||-++-+|...|++.|++++.
T Consensus 46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gv 82 (336)
T COG1663 46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGV 82 (336)
T ss_pred CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEE
Confidence 3678887 49999999999999999999999853
No 158
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=73.03 E-value=5 Score=40.40 Aligned_cols=36 Identities=28% Similarity=0.319 Sum_probs=31.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
.+++|+|.| -.||||...-|-..|++.|+++++...
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 468999999 679999999999999999999866443
No 159
>PLN02796 D-glycerate 3-kinase
Probab=72.66 E-value=5.5 Score=37.06 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=26.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.-+|+|+|.+ ||||++..|..+|...|.+++
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g 132 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAA 132 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCcee
Confidence 34579999975 799999999999988776654
No 160
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=72.57 E-value=4.6 Score=34.12 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=17.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+|+|+|- .||||++.+|..+|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 4778875 58999999999998
No 161
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=72.13 E-value=6.6 Score=35.79 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=30.0
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
...++|+|+|. .||||++..+...|...|+++...+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~ 69 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIA 69 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 46789999986 4799999999999999998886533
No 162
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=71.92 E-value=5.8 Score=36.15 Aligned_cols=109 Identities=17% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeeccc---------Ccccchhhhhh-------cccCCCCCCCCcEE
Q 020059 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAAFH-------CIALPSSKPKFQVA 102 (331)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~g~---------~g~~~~~~~~~-------~~~~~~~~~~~~~~ 102 (331)
+.++|++-|| .||=||+.+|...|++.|+++...++ .|.++.....+ ........ +.|+.
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQTGimia~~Gv~iDav~~DFvaGavE~~v~~~~~-~~d~i 189 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQTGIMIAGYGVPIDAVPSDFVAGAVEALVPEAAE-EHDWI 189 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHHHHHCHSEC--GGGSBGGGHHHHHHHHHHHHCC-C-SEE
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCceEEEecCCeeccchhhhhHHHHHHHHHHhhCc-CCCEE
Confidence 6789999988 59999999999999999999865444 34443322111 00000112 33899
Q ss_pred EEEecc---ccc-c--ccCc--eecccEEEE-ecCChhhhhcc-----CCHHHHHHHHHHhcc
Q 020059 103 VVEVSS---YQM-E--IPNK--YFCPTVSVV-LNLTPDHLERH-----KTMKNYALTKCHLFS 151 (331)
Q Consensus 103 VlE~~~---~~~-~--~~~~--~~~p~i~vi-Tni~~dHl~~~-----gt~e~~~~~K~~i~~ 151 (331)
++|--. |.- . .+.. -.+||..|+ ..-++.|++.| .++++..+.-..+..
T Consensus 190 vVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~~ip~l~~~I~l~e~la~ 252 (301)
T PF07755_consen 190 VVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHYPIPPLEEEIELIEALAG 252 (301)
T ss_dssp EEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTSC---HHHHHHHHHHCCC
T ss_pred EEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcCCCCCHHHHHHHHHHhhc
Confidence 999642 110 0 0111 147887766 45666777654 366766666555544
No 163
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=71.72 E-value=4.1 Score=36.03 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=17.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQM 64 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~i 64 (331)
.+|||||. .||||++.++..-
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~ 24 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREE 24 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999996 7899998887753
No 164
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=71.27 E-value=6.4 Score=32.99 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=26.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.+.|.|.|. .||||.+.+|+.-|...|+++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~ 35 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVL 35 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 467888886 4899999999999999887763
No 165
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=70.85 E-value=6.9 Score=32.59 Aligned_cols=31 Identities=23% Similarity=0.483 Sum_probs=25.3
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+|+|.|. .||||.+..|+..|...|+++...
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 5677774 589999999999999989887443
No 166
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=70.61 E-value=4.3 Score=39.67 Aligned_cols=28 Identities=32% Similarity=0.375 Sum_probs=23.5
Q ss_pred EEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 47 AVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 47 ~VtGT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.|||| .|||.++..|...|++.|++++.
T Consensus 2 ~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~ 32 (475)
T TIGR00313 2 MVVGTTSSAGKSTLTAGLCRILARRGYRVAP 32 (475)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 35544 79999999999999999998753
No 167
>PRK05480 uridine/cytidine kinase; Provisional
Probab=70.30 E-value=5.9 Score=33.80 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.+..+|+|+|- .||||++..|...|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46679999987 58999999999988
No 168
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=70.07 E-value=4.1 Score=34.20 Aligned_cols=24 Identities=42% Similarity=0.711 Sum_probs=18.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+|||||. .||||++.++.. .|..+
T Consensus 2 iIglTG~igsGKStv~~~l~~----~G~~v 27 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE----LGFPV 27 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH----TT-EE
T ss_pred EEEEECCCcCCHHHHHHHHHH----CCCCE
Confidence 6999996 689999988765 56665
No 169
>PRK08233 hypothetical protein; Provisional
Probab=69.11 E-value=4.7 Score=33.24 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=20.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
..+|+|+|. .||||.+..|+..|.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 468999886 589999999998875
No 170
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=68.74 E-value=5.8 Score=33.87 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=22.6
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~ 67 (331)
+...+|+|+|. .||||.+..|...|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45679999996 5899999999988864
No 171
>PTZ00301 uridine kinase; Provisional
Probab=68.73 E-value=6.6 Score=33.85 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=20.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~ 67 (331)
+..+|||+|- .||||.+..|..-|..
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 3479999984 6899999988766653
No 172
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=68.28 E-value=8.8 Score=37.03 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=26.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
..+|.++|- .|||||+.-|+..|+..|+++.+..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 446666664 5899999999999999998886533
No 173
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=68.26 E-value=5.3 Score=38.33 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=51.6
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCcee
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYF 118 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~ 118 (331)
.+..-|.|+|. .||||.+..|+..+..+|+-+ -++..|-....- +.=.||.=+|.++......-...
T Consensus 261 eraeGILIAG~PGaGKsTFaqAlAefy~~~GkiV---KTmEsPRDl~v~--------~eITQYs~l~g~me~t~DiLLLv 329 (604)
T COG1855 261 ERAEGILIAGAPGAGKSTFAQALAEFYASQGKIV---KTMESPRDLQVS--------PEITQYSPLEGDMEKTADILLLV 329 (604)
T ss_pred hhhcceEEecCCCCChhHHHHHHHHHHHhcCcEE---eeccCcccccCC--------hhhhhcccccCchhhhccEEEEe
Confidence 35567888887 579999999999999999877 455556443221 22346677777765443332346
Q ss_pred cccEEEEecC
Q 020059 119 CPTVSVVLNL 128 (331)
Q Consensus 119 ~p~i~viTni 128 (331)
+||+.|+--+
T Consensus 330 RPDYTIyDEm 339 (604)
T COG1855 330 RPDYTIYDEM 339 (604)
T ss_pred cCCceehhhh
Confidence 8998886444
No 174
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.16 E-value=9 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=27.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
.++|++.|- .|||||..-|+.-|...|+++++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 356777765 4799999999999999998886544
No 175
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=67.86 E-value=6.8 Score=29.53 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=31.9
Q ss_pred eCCCChHhHHHHHHHHHHhc-CCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccc
Q 020059 49 TGTNGKSTVVTFVGQMLNHL-GIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~-g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~ 109 (331)
-|-.||||++.-|+..+.+. |+++.+.-. . .+...|+.++-++.+
T Consensus 8 kgg~gkt~~~~~la~~~~~~~~~~~~l~d~--------d--------~~~~~D~IIiDtpp~ 53 (106)
T cd03111 8 KGGVGATTLAANLAVALAKEAGRRVLLVDL--------D--------LQFGDDYVVVDLGRS 53 (106)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCcEEEEEC--------C--------CCCCCCEEEEeCCCC
Confidence 46779999999999999998 988744311 0 012237888888753
No 176
>PF01558 POR: Pyruvate ferredoxin/flavodoxin oxidoreductase; InterPro: IPR019752 This domain is found in prokaryotes. It includes a region of the large protein pyruvate-flavodoxin oxidoreductase and the whole pyruvate ferredoxin oxidoreductase gamma subunit protein. It is not known whether the gamma subunit has a catalytic or regulatory role. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2RAA_A 3ON3_A 3G2E_A 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B ....
Probab=67.72 E-value=67 Score=26.32 Aligned_cols=150 Identities=13% Similarity=0.114 Sum_probs=78.6
Q ss_pred CChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccc-cccccCceecccEEEEecCCh
Q 020059 52 NGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTP 130 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~ 130 (331)
-|=-|+..+|..++...|+.+...-.+|.-. ..+.-++-+-+|.. ...... .-++|+.|..+-
T Consensus 3 qGv~t~g~ila~a~~~~G~~v~~~~~ygs~~-------------rGG~~~~~vris~~~~~~~~~-~~~~Dilv~l~~-- 66 (173)
T PF01558_consen 3 QGVVTAGKILARAAAREGYYVQSTPEYGSEI-------------RGGPVVSHVRISDEPIIPSPP-VGEADILVALDP-- 66 (173)
T ss_dssp STHHHHHHHHHHHHHHTTSEEEEEEEEESSS-------------SSSCEEEEEEEESS--SSSS--TSSESEEEESSH--
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEEeCCChhh-------------cCCeEEEEEEEecCcCccCcc-cCCCCEEEEcCH--
Confidence 3556888999999999998875444444221 23344455556644 222211 146788887742
Q ss_pred hhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEE
Q 020059 131 DHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQL 210 (331)
Q Consensus 131 dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (331)
+.+. ..+..++++|.+|+|.+.............. ..... ..+.++...
T Consensus 67 ---------~~~~----~~~~~l~~~g~vi~ns~~~~~~~~~~~~~~~-----------~~~~~--~v~~ip~~~----- 115 (173)
T PF01558_consen 67 ---------EALE----RHLKGLKPGGVVIINSSLVKPEPEEKDKPAY-----------FPRIE--RVIGIPATE----- 115 (173)
T ss_dssp ---------HHHH----HCGTTCETTEEEEEETTT-CHHHHHHHCCCH-----------HHHHC--EEEEE-HHH-----
T ss_pred ---------HHHH----HHhcCcCcCeEEEEECCCCCcHhHhhccccc-----------cccce--eEEeccHHH-----
Confidence 2222 5666778899999998643322221111000 00000 001111110
Q ss_pred EeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 020059 211 QLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEIL 252 (331)
Q Consensus 211 ~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~ 252 (331)
.-....+.....|..+.- +++..++++.+.+.+++++.
T Consensus 116 --ia~~~~~~~~~~N~~~lG--a~~~~~~l~~e~~~~~i~~~ 153 (173)
T PF01558_consen 116 --IAKELGGNPRFANMVMLG--ALAKLLGLPLESLEEAIKER 153 (173)
T ss_dssp --HHHHTTS-GGGHHHHHHH--HHHHHHTS-HHHHHHHHHHH
T ss_pred --HHHhhhcchhhHHHHHHH--HHHHHcCCCHHHHHHHHHHH
Confidence 011223334556777555 67788899999999999873
No 177
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=67.54 E-value=9 Score=34.59 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhc-C-CCeeec
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL-G-IEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~-g-~~~~~~ 75 (331)
+..+|++.|.+ |||||+..|+..+... | +++.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li 230 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALI 230 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 34578888754 7999999999988765 4 666433
No 178
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=67.42 E-value=6.7 Score=33.93 Aligned_cols=45 Identities=29% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHH-hcCCCee
Q 020059 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLN-HLGIEAF 73 (331)
Q Consensus 25 g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~-~~g~~~~ 73 (331)
++|+.=.++.+. .++.-++|-||| |||+|+..|-.=+. ..+.++.
T Consensus 11 ~v~v~l~~~~l~---~~H~~I~G~TGs-GKS~~~~~ll~~l~~~~~~~~i 56 (229)
T PF01935_consen 11 DVPVYLDLNKLF---NRHIAIFGTTGS-GKSNTVKVLLEELLKKKGAKVI 56 (229)
T ss_pred CceEEeeHHHhc---cceEEEECCCCC-CHHHHHHHHHHHHHhcCCCCEE
Confidence 355544443322 245668888886 99988876666555 5555543
No 179
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=67.34 E-value=5.9 Score=32.92 Aligned_cols=14 Identities=36% Similarity=0.588 Sum_probs=11.9
Q ss_pred hcCCCCCCceeEEe
Q 020059 250 EILRTPPHRMQIVH 263 (331)
Q Consensus 250 ~~~~~~~gR~e~~~ 263 (331)
++++|++||++++=
T Consensus 61 ~k~RPL~gRiNiVL 74 (190)
T KOG1324|consen 61 EKFRPLPGRINVVL 74 (190)
T ss_pred cccCCCCCceEEEE
Confidence 46899999999984
No 180
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=67.21 E-value=5.1 Score=36.04 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=21.1
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhcCC
Q 020059 45 ILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL~~~g~ 70 (331)
+|+|+|.+ ||||.+.+|..+|...+.
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~ 28 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLV 28 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCce
Confidence 47888865 799999999999976543
No 181
>PRK13768 GTPase; Provisional
Probab=67.11 E-value=8.9 Score=34.00 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=24.3
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|.|+ |..||||++.-+...|...|.++.+
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~ 35 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAI 35 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEE
Confidence 45555 4578999999999999999988754
No 182
>PRK11519 tyrosine kinase; Provisional
Probab=66.25 E-value=12 Score=38.71 Aligned_cols=35 Identities=17% Similarity=0.276 Sum_probs=30.1
Q ss_pred CCCcEEEEeC---CCChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
...++|.||+ --||||++.-|+..|...|.++.+.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlI 561 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLI 561 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 3568999998 5699999999999999999998654
No 183
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=66.24 E-value=5.4 Score=38.36 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=24.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH-hcCCCeeec
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLN-HLGIEAFVG 75 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~-~~g~~~~~~ 75 (331)
..+|.++|. .|||||+.-|+..|. ..|.++.+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 346666664 589999999999886 578887643
No 184
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=66.16 E-value=4.8 Score=34.02 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=17.7
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 020059 45 ILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtG--T~GKTTt~~~l~~iL 65 (331)
+|+|+| ..||||.+..|...|
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 478888 469999999998886
No 185
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=66.13 E-value=10 Score=25.99 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=17.3
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+|.|+|. .||||.+..|...|
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 3667775 48999999999999
No 186
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=65.61 E-value=9.1 Score=36.70 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=27.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.-+|||+|-+ ||||.+..|..+|+..|++++..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvI 246 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATL 246 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEE
Confidence 34689999975 79999999999998877766443
No 187
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=65.15 E-value=5.9 Score=35.82 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=21.7
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCC
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~ 71 (331)
+.|=+|| |||+++..++..+...|..
T Consensus 63 l~G~pGT-GKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 63 FTGNPGT-GKTTVALRMAQILHRLGYV 88 (284)
T ss_pred EEcCCCC-CHHHHHHHHHHHHHHcCCc
Confidence 4566788 9999999999999987754
No 188
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=64.83 E-value=6.5 Score=32.35 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.4
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~ 67 (331)
-.|+|+|+| |.||||.+.-|+.++..
T Consensus 7 F~K~VailG~ESsGKStLv~kLA~~fnt 34 (187)
T COG3172 7 FVKTVAILGGESSGKSTLVNKLANIFNT 34 (187)
T ss_pred hheeeeeecCcccChHHHHHHHHHHhCC
Confidence 357899998 79999999999999874
No 189
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=64.83 E-value=5.4 Score=32.65 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=16.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHH
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~ 66 (331)
++||+| .||||+..+|.+-|.
T Consensus 17 vmGvsG-sGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 17 VMGVSG-SGKSTIGKALSEELG 37 (191)
T ss_pred EEecCC-CChhhHHHHHHHHhC
Confidence 455555 389999999999886
No 190
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=64.79 E-value=7.8 Score=31.61 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=22.6
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+-.|||+++.-|...|++.|+++++.
T Consensus 7 ~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 7 TGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 34799999999999999999998653
No 191
>PRK07933 thymidylate kinase; Validated
Probab=64.58 E-value=11 Score=32.50 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=24.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.|+|-|. .||||.+.+|..-|+..|+++..
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~ 33 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVAT 33 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4666663 69999999999999999988743
No 192
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=64.25 E-value=21 Score=30.00 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++..+|=.||= .||||.+..|...|.+.|+.+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45568888885 5899999999999999998873
No 193
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=63.76 E-value=6.4 Score=33.59 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=22.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhc
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL 68 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~ 68 (331)
+.-+|||+| ..||||.+..|...|..+
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~ 31 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGC 31 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCC
Confidence 345899998 469999999999998753
No 194
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=63.74 E-value=13 Score=30.50 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=24.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
++.++|- .||||++..+...+.+.|.++.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4455543 5899999999999999998875544
No 195
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=63.23 E-value=9.8 Score=33.87 Aligned_cols=31 Identities=29% Similarity=0.452 Sum_probs=25.4
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|.|.||| +-||+-|++-|..+|+..|+++..
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~ 36 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTM 36 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEE
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeee
Confidence 6788887 569999999999999999999854
No 196
>PRK00698 tmk thymidylate kinase; Validated
Probab=62.80 E-value=14 Score=31.14 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=25.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.++|.|.|- .||||.+..|+.-|...|+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~ 34 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDV 34 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 467888885 689999999999998887654
No 197
>PRK10867 signal recognition particle protein; Provisional
Probab=62.62 E-value=12 Score=35.96 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=27.1
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhc-CCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHL-GIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~-g~~~~~~g 76 (331)
..+|.++|- .|||||+.-|+..|... |+++.+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 457777775 48999999999999888 98886543
No 198
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=62.53 E-value=8.6 Score=34.31 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
|--|||||++=|+..|...|+++...|.
T Consensus 9 GGIGKST~~~Nlsaala~~G~kVl~iGC 36 (273)
T PF00142_consen 9 GGIGKSTTASNLSAALAEMGKKVLQIGC 36 (273)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCcccChhhhHHHHHHHhccceeeEecc
Confidence 6789999999999999999999876553
No 199
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=62.46 E-value=14 Score=38.46 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
...++|+|| |..||||++.-|+..|...|+++.+.
T Consensus 544 ~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlI 581 (754)
T TIGR01005 544 AEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLI 581 (754)
T ss_pred CCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEE
Confidence 355789998 55689999999999999999988654
No 200
>PRK04040 adenylate kinase; Provisional
Probab=62.25 E-value=9.9 Score=32.06 Aligned_cols=29 Identities=31% Similarity=0.376 Sum_probs=21.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++|+|||. .||||.+..|..-|. .++++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~ 33 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK-EDYKIV 33 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEE
Confidence 57888886 589999999998885 244443
No 201
>PRK07429 phosphoribulokinase; Provisional
Probab=61.51 E-value=9.1 Score=35.42 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcC
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g 69 (331)
.+..+|+|+|. .||||++..|..+|...+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~ 36 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEEL 36 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCc
Confidence 35569999995 589999999999997543
No 202
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=61.41 E-value=5.9 Score=32.25 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=14.4
Q ss_pred EEEeCC--CChHhHHHHHHHH
Q 020059 46 LAVTGT--NGKSTVVTFVGQM 64 (331)
Q Consensus 46 I~VtGT--~GKTTt~~~l~~i 64 (331)
|+|||+ .||||++.-|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 788886 5899999988866
No 203
>PRK06547 hypothetical protein; Provisional
Probab=60.97 E-value=15 Score=30.49 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
....+|+|+|.. ||||++..|+..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 466799998765 6999999998875
No 204
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=60.76 E-value=13 Score=32.93 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
|-.||||++.-++..+.+.|+++.+..
T Consensus 9 gG~GKtt~a~~la~~~a~~g~~vLlvd 35 (254)
T cd00550 9 GGVGKTTISAATAVRLAEQGKKVLLVS 35 (254)
T ss_pred CCchHHHHHHHHHHHHHHCCCCceEEe
Confidence 667999999999999999999886544
No 205
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=60.50 E-value=5.2 Score=32.44 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=17.1
Q ss_pred EEeCCCChHhHHHHHHHHHHhc
Q 020059 47 AVTGTNGKSTVVTFVGQMLNHL 68 (331)
Q Consensus 47 ~VtGT~GKTTt~~~l~~iL~~~ 68 (331)
||+| .||||+..+|++-|...
T Consensus 2 GVsG-~GKStvg~~lA~~lg~~ 22 (161)
T COG3265 2 GVSG-SGKSTVGSALAERLGAK 22 (161)
T ss_pred CCCc-cCHHHHHHHHHHHcCCc
Confidence 5666 49999999999988643
No 206
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=60.35 E-value=9.8 Score=32.72 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=21.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
...+|+|.|+ .||||.+.+|+.=|.
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhC
Confidence 3579999997 689999999998886
No 207
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.16 E-value=16 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.174 Sum_probs=28.5
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+.++|+++| -.|||||..-|+..+...|.++++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 467888888 56899999999998988888876543
No 208
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.04 E-value=12 Score=32.31 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=25.6
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
++.|-+|| ..||||.+.=|+.+|++.+..+
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~v 32 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRV 32 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhc
Confidence 35778887 6899999999999999988665
No 209
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=60.03 E-value=14 Score=36.04 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=28.2
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtG------T~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
..++|.||. --|||||+.=|++.|.+.|.++.
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l 74 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAI 74 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEE
Confidence 568999999 44899999999999999999864
No 210
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=60.02 E-value=14 Score=32.97 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=23.7
Q ss_pred CcEEEEe---CCCChHhHHHHH-HHHHHhcCCCee
Q 020059 43 IKILAVT---GTNGKSTVVTFV-GQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~Vt---GT~GKTTt~~~l-~~iL~~~g~~~~ 73 (331)
.++|+|+ |-.||||++.-+ +.+++..|+++.
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~ 36 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVL 36 (262)
T ss_pred CEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEE
Confidence 3578887 889999999999 656666666643
No 211
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.85 E-value=15 Score=36.01 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=24.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH-hcC-CCeee
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~-~~g-~~~~~ 74 (331)
+..+|++.|.| |||||...|+..+. ..| .++++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~L 291 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVAL 291 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEE
Confidence 34688888876 69999999999884 445 35644
No 212
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=58.81 E-value=11 Score=33.19 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=23.5
Q ss_pred eCCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 49 TGTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
-|-.||||++..+++.|...|.++.+.
T Consensus 11 KGGvGKSt~a~~la~~l~~~g~~vl~i 37 (241)
T PRK13886 11 KGGVGKSFIAATIAQYKASKGQKPLCI 37 (241)
T ss_pred CCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 378899999999999999999887544
No 213
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=58.54 E-value=14 Score=35.79 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=27.2
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|.|.||| |=||+-|++-|..+|++.|+++..
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~ 36 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 36 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEE
Confidence 5677887 679999999999999999999854
No 214
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=58.11 E-value=16 Score=33.69 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=52.7
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-c-cCCCCCCCCcEEEEEeccc-ccc----cc
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-I-ALPSSKPKFQVAVVEVSSY-QME----IP 114 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~-~~~~~~~~~~~~VlE~~~~-~~~----~~ 114 (331)
+++.++ |-.||||++.-++--|.+.|.++.+..+-...-....+.. + ..+ .+-.-...++|.+.- .++ ..
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~~elg~~~-~~I~~nL~a~eiD~~~~l~ey~~~v 81 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFDLELGHDP-RKVGPNLDALELDPEKALEEYWDEV 81 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhccccCCch-hhcCCCCceeeecHHHHHHHHHHHH
Confidence 456666 6789999999999999999987655443211111111110 0 000 001123467787752 111 10
Q ss_pred Cc--eecccEEEEecCChhhhhccCCHHHHHH
Q 020059 115 NK--YFCPTVSVVLNLTPDHLERHKTMKNYAL 144 (331)
Q Consensus 115 ~~--~~~p~i~viTni~~dHl~~~gt~e~~~~ 144 (331)
-. .-.+.-..+-++..|++...+.+++++.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~ 113 (322)
T COG0003 82 KDYLARLLRTRGLGGIYADELATLPGIDEALA 113 (322)
T ss_pred HHHHHhhccccccchhHHHHHhhCCCHHHHHH
Confidence 00 0112233336777788888887777654
No 215
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=57.98 E-value=10 Score=28.91 Aligned_cols=20 Identities=25% Similarity=0.572 Sum_probs=15.5
Q ss_pred EEEeCC--CChHhHHHHHHHHH
Q 020059 46 LAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 46 I~VtGT--~GKTTt~~~l~~iL 65 (331)
|.|+|. .||||++..|..-+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 344544 49999999999997
No 216
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=57.74 E-value=11 Score=32.09 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.+|+|||. .||||.+.++.. .|..+
T Consensus 2 ~~igitG~igsGKst~~~~l~~----~g~~v 28 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS----EGFLI 28 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 57999997 589999999874 46654
No 217
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=57.43 E-value=13 Score=30.92 Aligned_cols=26 Identities=42% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|||. .||||.+.++.. .|+.+..
T Consensus 1 ii~itG~~gsGKst~~~~l~~----~g~~~i~ 28 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE----LGIPVID 28 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH----CCCCEEe
Confidence 4889986 689999999887 4666543
No 218
>PLN02924 thymidylate kinase
Probab=57.00 E-value=18 Score=31.40 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=27.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
..+.|.|-|- .||||.+.+|+..|+..|+++.
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~ 48 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAE 48 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCce
Confidence 4568999985 6899999999999999998863
No 219
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=56.93 E-value=16 Score=34.43 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=27.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+..+|+|+|. .||||....|...|+.. +++++.
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~i 38 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYY 38 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEE
Confidence 6679999994 58999999999999988 777543
No 220
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=56.83 E-value=20 Score=29.26 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 40 PRSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 40 ~~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+++.-+|=|||- +||+|.+-.|.+.|.+.|..+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~ 62 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLT 62 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceE
Confidence 346678889985 589999999999999999765
No 221
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=56.65 E-value=14 Score=29.23 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=35.2
Q ss_pred EEEeCCCChHhHHHHHHHHHHhcCCCeeecc-cCcccchhhhhhcccCCCCCCCCcEEEEEeccc
Q 020059 46 LAVTGTNGKSTVVTFVGQMLNHLGIEAFVGG-NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSY 109 (331)
Q Consensus 46 I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g-~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~ 109 (331)
.+..|-.||||++..++..|+..|.++.+.. ..+. ..-++|+.|+.++.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~--------------~~~~yd~VIiD~p~~ 55 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGL--------------ANLDYDYIIIDTGAG 55 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC--------------CCCCCCEEEEECCCC
Confidence 3446888999999999999999998875432 1111 012278899999853
No 222
>PLN02348 phosphoribulokinase
Probab=56.63 E-value=15 Score=34.91 Aligned_cols=29 Identities=14% Similarity=0.242 Sum_probs=24.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcC
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g 69 (331)
++..+|+|+|- .||||.+..|..+|...+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~ 77 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAA 77 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcc
Confidence 35579999986 589999999999997653
No 223
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=56.57 E-value=14 Score=35.60 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=24.2
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhcCCCee
Q 020059 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 45 ~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.|-|||| .|||+++..|.+.|++.|.++.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~ 34 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDAGYAVQ 34 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeE
Confidence 4556665 5999999999999999998874
No 224
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=56.48 E-value=9.3 Score=31.98 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=16.8
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+|+|||+ .||||++.++....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 4899987 58999998887653
No 225
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=56.48 E-value=12 Score=32.31 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
...|.+-|- .||||.+.+|+..|++.|+++.+
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~ 36 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKERLEERGIKVVL 36 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 457777774 68999999999999999987744
No 226
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=55.91 E-value=19 Score=31.81 Aligned_cols=31 Identities=29% Similarity=0.480 Sum_probs=26.3
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|.|.||| +-||+-+++-+..+|++.|+++..
T Consensus 1 kyi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 35 (255)
T cd03113 1 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTA 35 (255)
T ss_pred CEEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEE
Confidence 3567777 569999999999999999999854
No 227
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=55.86 E-value=16 Score=38.32 Aligned_cols=33 Identities=24% Similarity=0.173 Sum_probs=29.5
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhcCCCee
Q 020059 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~ 73 (331)
-+.+.+.||||| |||-++..|.+.++..|.++.
T Consensus 25 ~~~~~~fI~GtnT~VGKT~vS~~L~~~~~~~g~~~~ 60 (817)
T PLN02974 25 LSCPAFAVWGANTAVGKTLVSAGLAAAAASRRSPVL 60 (817)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 478899999998 999999999999999987653
No 228
>PLN02422 dephospho-CoA kinase
Probab=55.81 E-value=12 Score=32.73 Aligned_cols=26 Identities=35% Similarity=0.585 Sum_probs=20.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.|+|||. .||||++.++.. .|..+.
T Consensus 2 ~~igltG~igsGKstv~~~l~~----~g~~~i 29 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS----SGIPVV 29 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH----CCCeEE
Confidence 57999986 689999998873 476653
No 229
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=55.66 E-value=16 Score=32.81 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.4
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+|.|.++| ..||||.+.-|...|.+.+..+.+.+
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~ 36 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS 36 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence 36788888 68999999999999999877764443
No 230
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=54.91 E-value=14 Score=31.63 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=20.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
...+|+|||. .||||.+.++.. .|..+
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~----~g~~v 32 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE----MGCEL 32 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH----CCCeE
Confidence 3458999997 589999988875 35554
No 231
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=54.54 E-value=9.7 Score=36.69 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=30.5
Q ss_pred hhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 37 QVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 37 ~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++.+++.-+-|=||| |||-|-..|+.-|+..|..|++
T Consensus 16 ~~~NRHGLIaGATGT-GKTvTLqvlAE~fS~~GVPVfl 52 (502)
T PF05872_consen 16 KMANRHGLIAGATGT-GKTVTLQVLAEQFSDAGVPVFL 52 (502)
T ss_pred hhccccceeeccCCC-CceehHHHHHHHhhhcCCcEEE
Confidence 333356667788887 9999999999999999999864
No 232
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=54.22 E-value=21 Score=35.27 Aligned_cols=32 Identities=38% Similarity=0.508 Sum_probs=28.3
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtG------T~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.++|.||. .-|||||+.=|+..|.+.|.++.
T Consensus 54 ~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~~Gkkvl 91 (557)
T PRK13505 54 DGKLILVTAINPTPAGEGKSTVTVGLGDALNKIGKKTV 91 (557)
T ss_pred CCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 468999998 34899999999999999999874
No 233
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=54.16 E-value=16 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 34 FAAQVIPRSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 34 ~~~~~~~~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
++.... +....+.|+|.+ ||||+...|...+..
T Consensus 17 ~l~~~v-~~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 17 YLWLAV-EARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred HHHHHH-hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 334444 466789999865 899998887777653
No 234
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=53.85 E-value=16 Score=30.23 Aligned_cols=30 Identities=27% Similarity=0.593 Sum_probs=21.8
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+|.|+|- +||||++.+|+..| |+++...|.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~vsaG~ 33 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAGT 33 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCceeeccH
Confidence 4667764 68999999998777 666655454
No 235
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=53.76 E-value=13 Score=32.69 Aligned_cols=33 Identities=30% Similarity=0.400 Sum_probs=27.1
Q ss_pred EEEEe--CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 45 ILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 45 ~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
.|+|= |--|||||++=+++.|...|+++...|-
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGC 37 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGC 37 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcC
Confidence 45554 5679999999999999999999876664
No 236
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=53.60 E-value=11 Score=32.05 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=15.2
Q ss_pred EEEEeCCC--ChHhHHHHHHH
Q 020059 45 ILAVTGTN--GKSTVVTFVGQ 63 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~ 63 (331)
+|+|||.+ ||||++.++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~ 21 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE 21 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH
Confidence 48999975 79999887763
No 237
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=53.11 E-value=18 Score=37.22 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=25.0
Q ss_pred EEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 45 ILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 45 ~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.|-|+|| .|||+++.-|.+.|++.|++++.+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~f 37 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFF 37 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 4455544 789999999999999999988643
No 238
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=52.91 E-value=19 Score=35.58 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=26.0
Q ss_pred CCCcEEEEeCCC------ChHhHHHHHHHHHHhcCCCee
Q 020059 41 RSIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 41 ~~~~~I~VtGT~------GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.+.+.|.||+.+ |||||+-=|.+.|...|+++.
T Consensus 52 ~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~ 90 (557)
T PF01268_consen 52 PDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAI 90 (557)
T ss_dssp ---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EE
T ss_pred CCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceE
Confidence 467899999986 999999999999999999864
No 239
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=52.88 E-value=14 Score=33.11 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=19.7
Q ss_pred CCCcEEEEeCCCChHhHH-HHHHHHHHhcCCC
Q 020059 41 RSIKILAVTGTNGKSTVV-TFVGQMLNHLGIE 71 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~-~~l~~iL~~~g~~ 71 (331)
....+.|.+|| |||||. .-+.++|...+..
T Consensus 14 ~~~lV~a~AGS-GKT~~l~~ri~~ll~~~~~~ 44 (315)
T PF00580_consen 14 GPLLVNAGAGS-GKTTTLLERIAYLLYEGGVP 44 (315)
T ss_dssp SEEEEEE-TTS-SHHHHHHHHHHHHHHTSSST
T ss_pred CCEEEEeCCCC-CchHHHHHHHHHhhccccCC
Confidence 34568888886 999976 4456677666544
No 240
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=52.44 E-value=16 Score=29.46 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=23.1
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhcCCCeee
Q 020059 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 46 I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|++.| -.||||+...+...+...|.++.+
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~i 32 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAV 32 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 44554 358999999999999999988754
No 241
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=52.29 E-value=22 Score=28.53 Aligned_cols=27 Identities=30% Similarity=0.373 Sum_probs=21.1
Q ss_pred EEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 46 LAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 46 I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
|.|+| -.||||.+..|...|...|..+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~ 30 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPV 30 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 44555 3699999999999998777654
No 242
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=52.17 E-value=22 Score=29.37 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=21.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.++|.|.|.+ ||||.+..|+.-+ |..+.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~---g~~~~ 32 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY---GFTHL 32 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh---CCcEE
Confidence 45788888864 7999999998755 55543
No 243
>PRK06761 hypothetical protein; Provisional
Probab=51.79 E-value=14 Score=33.42 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.3
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
++|.|+| -.||||++..|..-|...|..+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v 34 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEV 34 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEE
Confidence 5788887 4689999999999998877765
No 244
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=51.71 E-value=20 Score=35.46 Aligned_cols=31 Identities=32% Similarity=0.333 Sum_probs=27.7
Q ss_pred CCcEEEEeC------CCChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTG------TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtG------T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+.++|.||. --|||||+.=|++.|.+.|.++
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~ 89 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV 89 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce
Confidence 568999999 4489999999999999999875
No 245
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=51.41 E-value=21 Score=33.25 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=21.8
Q ss_pred CCcEEEEeCCC-ChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGTN-GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT~-GKTTt~~~l~~iL~~~g~~~ 72 (331)
..+++.|.+|+ ||||.+.+|-.-.-..|+++
T Consensus 103 GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~P 134 (415)
T KOG2749|consen 103 GPRVMVVGPTDVGKSTLCRILLNYAVKQGRRP 134 (415)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHHcCCcc
Confidence 34455565666 99999998766555558775
No 246
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=51.35 E-value=16 Score=30.87 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=19.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
..|+|||. .||||++.++.. + |..+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~---g~~~ 29 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L---GAPV 29 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c---CCEE
Confidence 57999995 689999998887 3 5554
No 247
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=50.95 E-value=16 Score=31.37 Aligned_cols=27 Identities=26% Similarity=0.428 Sum_probs=20.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
..+||+||. .||||++.++..-| |..+
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l---g~~v 34 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL---NLNV 34 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc---CCeE
Confidence 457999995 78999999888643 5544
No 248
>PRK05541 adenylylsulfate kinase; Provisional
Probab=50.78 E-value=32 Score=28.28 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=24.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+|.++|- .||||.+..|..-|...+..+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~ 38 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNV 38 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 5568888886 579999999999998765443
No 249
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.68 E-value=24 Score=33.90 Aligned_cols=34 Identities=15% Similarity=0.065 Sum_probs=25.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH--hcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLN--HLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~--~~g~~~~~~g 76 (331)
.++|.+.|. .|||||+..|+..+. ..|.++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 357777765 479999999998886 5577776543
No 250
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=50.52 E-value=17 Score=31.22 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.8
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
|-.||||++.-++..+.+.|+++.+..
T Consensus 8 ~g~Gkt~~~~~la~~~a~~g~~~~l~~ 34 (217)
T cd02035 8 GGVGKTTIAAATAVRLAEEGKKVLLVS 34 (217)
T ss_pred CCchHHHHHHHHHHHHHHCCCcEEEEE
Confidence 557999999999999999998875443
No 251
>PRK05380 pyrG CTP synthetase; Validated
Probab=50.26 E-value=23 Score=35.02 Aligned_cols=32 Identities=28% Similarity=0.490 Sum_probs=28.3
Q ss_pred CcEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.|.|.||| +=||+.|++-|..+|++.|+++..
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~~g~~v~~ 37 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTI 37 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 46788888 679999999999999999999854
No 252
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=50.14 E-value=18 Score=30.61 Aligned_cols=26 Identities=38% Similarity=0.586 Sum_probs=20.1
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+.|+|||. .||||++.++...+ |..+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~---g~~~ 29 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK---GIPI 29 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh---CCeE
Confidence 47999986 68999999988654 5554
No 253
>PRK13695 putative NTPase; Provisional
Probab=50.10 E-value=22 Score=29.17 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 45 ILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
.|++||.+ ||||...++..-|+..|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 36778665 79999999988888767653
No 254
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=49.88 E-value=19 Score=35.51 Aligned_cols=32 Identities=31% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.+.|.||+.+ |||||+-=|.+.|...|+++.
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~ 99 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVS 99 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceE
Confidence 57899999976 999999999999999998864
No 255
>PRK00300 gmk guanylate kinase; Provisional
Probab=49.81 E-value=17 Score=30.67 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
++..+|+|.|.+ ||||.+.+|...+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 356799999986 89999999988764
No 256
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=49.55 E-value=14 Score=30.75 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.3
Q ss_pred CChHhHHHHHHHHHHhcCCCe
Q 020059 52 NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.||||.+.+|..-|+..|+++
T Consensus 7 sGKtT~~~~L~~~l~~~~~~~ 27 (186)
T PF02223_consen 7 SGKTTQIRLLAEALKEKGYKV 27 (186)
T ss_dssp SSHHHHHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCcc
Confidence 599999999999999999874
No 257
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=49.53 E-value=16 Score=31.45 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=23.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..+.|+=|-| ||||+-+||+.+|.-
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 467899999988 599999999999974
No 258
>PRK13973 thymidylate kinase; Provisional
Probab=49.24 E-value=17 Score=31.15 Aligned_cols=32 Identities=25% Similarity=0.499 Sum_probs=26.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.|.+-|. .||||.+.+|+.-|...|+++...
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56777765 589999999999999999887543
No 259
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=47.95 E-value=19 Score=29.68 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=18.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
++|.|+|.+ ||||+...|...+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 467888875 799999998887754
No 260
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.90 E-value=29 Score=32.79 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=23.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH-hcC-CCeeec
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~-~~g-~~~~~~ 75 (331)
+..++++.|.+ |||||...|+.-+. ..| .++++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~li 173 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALL 173 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 45677777775 79999999998764 345 455443
No 261
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=47.63 E-value=22 Score=34.70 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=24.4
Q ss_pred CCCcEEEEeCCC---ChHhHHHHHHHHHHhc
Q 020059 41 RSIKILAVTGTN---GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 41 ~~~~~I~VtGT~---GKTTt~~~l~~iL~~~ 68 (331)
.+++.|.||||+ |||+++..|.+.|+..
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~ 266 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK 266 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 357789999985 9999999999999975
No 262
>PRK01184 hypothetical protein; Provisional
Probab=47.11 E-value=27 Score=28.86 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=19.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++|+++|- .||||.+. ++++.|+.+.
T Consensus 2 ~~i~l~G~~GsGKsT~a~----~~~~~g~~~i 29 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK----IAREMGIPVV 29 (184)
T ss_pred cEEEEECCCCCCHHHHHH----HHHHcCCcEE
Confidence 58889986 57999765 4677787663
No 263
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=46.30 E-value=19 Score=34.20 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.2
Q ss_pred cEEEEeCC--CChHhHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQ 63 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~ 63 (331)
..|+|||. .||||++.+|+.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~ 23 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE 23 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 57999995 799999999975
No 264
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=46.03 E-value=29 Score=34.22 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=27.3
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|.|.||| +-||+.|++-|..+|++.|+++..
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~ 36 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTI 36 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEE
Confidence 6788887 469999999999999999999853
No 265
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=45.77 E-value=12 Score=32.06 Aligned_cols=64 Identities=14% Similarity=0.279 Sum_probs=41.2
Q ss_pred eeeeeccccc-cCChHHHHHHHcCCee--eeHHHHHHhhCC----CCCcEEEEeCCCChHh-HHHHHHHHHHh
Q 020059 3 MLWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP----RSIKILAVTGTNGKST-VVTFVGQMLNH 67 (331)
Q Consensus 3 ~~~~~~~~~~-~~~p~~~~a~~~g~~~--l~~~~~~~~~~~----~~~~~I~VtGT~GKTT-t~~~l~~iL~~ 67 (331)
.|||.++..+ .+.+....|+++++++ .++++..-..+| +..-+|+|+ |+||+= .+..|..-+++
T Consensus 71 ~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais-T~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 71 FLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS-SGGAAPVLARLLRERIET 142 (205)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 5677777776 4456666788999998 677765544433 344578887 778763 44555555544
No 266
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=45.47 E-value=61 Score=28.50 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=39.4
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC--CC-----ceeEEeeecCcEEEEEcCCCCCHHHHHHHHhc
Q 020059 233 VLGLDIGVDVEALNSTIEILRTP--PH-----RMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (331)
Q Consensus 233 a~~~~lg~~~~~i~~~l~~~~~~--~g-----R~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (331)
..|...++|.+.|.++|++..+. .. ++|.. ..+|+.||.++.-.|..-+..-++.
T Consensus 54 ~~Ak~~~~Pkd~IerAIkr~~g~~~~~~~~~~~YEg~--gP~GvaiiVe~lTDN~nRt~~~ir~ 115 (238)
T TIGR01033 54 EKAKAANMPKDNIERAIKKGAGELDGSNYEEITYEGY--APGGVAIIVECLTDNKNRTASEVRS 115 (238)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCceEEEEEEecCCHHhHHHHHHH
Confidence 77888999999999999988762 22 33333 3578888888866676666655554
No 267
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=45.45 E-value=24 Score=29.91 Aligned_cols=23 Identities=43% Similarity=0.605 Sum_probs=18.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
...+++|||.| ||||...++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHH
Confidence 34699999998 799999998844
No 268
>PRK08118 topology modulation protein; Reviewed
Probab=45.45 E-value=26 Score=28.83 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=16.7
Q ss_pred EEEEeCC--CChHhHHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.|.|.|+ .||||.+..|+..+.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 4666654 589999999998774
No 269
>PRK06762 hypothetical protein; Provisional
Probab=45.33 E-value=26 Score=28.41 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=18.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
++|.|+|. .||||.+..|..-|
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 57888884 68999999998777
No 270
>PF12846 AAA_10: AAA-like domain
Probab=44.88 E-value=22 Score=31.64 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=20.4
Q ss_pred CcEEEEeCCCChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.-++|-||| |||++...+-.-+...|..+.
T Consensus 4 ~~i~G~tGs-GKT~~~~~l~~~~~~~g~~~~ 33 (304)
T PF12846_consen 4 TLILGKTGS-GKTTLLKNLLEQLIRRGPRVV 33 (304)
T ss_pred EEEECCCCC-cHHHHHHHHHHHHHHcCCCEE
Confidence 345666664 899988877766666676554
No 271
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=44.79 E-value=31 Score=29.28 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=21.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH--HhcCC
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQML--NHLGI 70 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL--~~~g~ 70 (331)
..++++||-| ||||...+|.... ...|.
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~ 56 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNVILAQAGA 56 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 3799999988 6999999997644 34554
No 272
>PLN02327 CTP synthase
Probab=44.74 E-value=31 Score=34.27 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=27.3
Q ss_pred cEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|.|.||| +-||+.|++-|..+|+..|+++..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~ 36 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTS 36 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceee
Confidence 6788887 569999999999999999999854
No 273
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=44.68 E-value=22 Score=30.13 Aligned_cols=32 Identities=28% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
.....+.|+|-| ||||.-++|+-+++...-.+
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v 59 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV 59 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence 356789999998 59999999999998654344
No 274
>PLN02759 Formate--tetrahydrofolate ligase
Probab=44.66 E-value=31 Score=34.47 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHHh-cCCCee
Q 020059 42 SIKILAVTGTN------GKSTVVTFVGQMLNH-LGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~~l~~iL~~-~g~~~~ 73 (331)
+.+.|.||+.+ |||||+-=|.+.|.. .|+++.
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~ 106 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVV 106 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeE
Confidence 56899999976 999999999999997 888863
No 275
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=44.56 E-value=28 Score=31.39 Aligned_cols=64 Identities=27% Similarity=0.202 Sum_probs=38.1
Q ss_pred cCChHHHHHHHcCCeeeeHHHHHHhhCC---CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 13 LKATGLACLLQSGKRVMSELDFAAQVIP---RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 13 ~~~p~~~~a~~~g~~~l~~~~~~~~~~~---~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
-.+|.+..+++.-.+--.+.-.+-+.++ .+..++++-|-| |||||-.||+-++.-.+-++-..|
T Consensus 17 ~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G 85 (325)
T COG4586 17 IKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNG 85 (325)
T ss_pred eeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecC
Confidence 3456666555543222222222222221 256799999988 599999999999886554554444
No 276
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=44.55 E-value=33 Score=35.55 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=24.4
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH-hcC-CCeeec
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLN-HLG-IEAFVG 75 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~-~~g-~~~~~~ 75 (331)
..+|++.|.| |||||...|+..+. ..| +++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~li 221 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALL 221 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEe
Confidence 4578888776 69999999998884 555 466543
No 277
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=44.48 E-value=35 Score=28.85 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=22.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.++..|+|-- ||||+...+...+...|+++..
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~ 51 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIG 51 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 3456665544 5999999999999999987643
No 278
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=43.72 E-value=34 Score=29.39 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=20.6
Q ss_pred cEEEEeCCC--ChHhHHHHHH--HHHHhcCCCe
Q 020059 44 KILAVTGTN--GKSTVVTFVG--QMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~--~iL~~~g~~~ 72 (331)
+.+.|||.| ||||.-..+. .++.+.|..+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v 62 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFV 62 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCee
Confidence 789999998 5777777776 4455566543
No 279
>PRK06217 hypothetical protein; Validated
Probab=43.60 E-value=25 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=16.8
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.|.|+|. .||||.+..|+..|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 4666664 58999999999877
No 280
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=43.14 E-value=20 Score=27.87 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+++|.|.| ||||...+|...+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 56789999998 79998887776655
No 281
>PRK00131 aroK shikimate kinase; Reviewed
Probab=42.98 E-value=32 Score=27.85 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL 65 (331)
+.+.|.++| ..||||++..|+..|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 445777776 469999999999988
No 282
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.10 E-value=21 Score=29.48 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..+++|.|-| ||||...+|..++..
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP 52 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 366899999997 899999998877653
No 283
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=42.09 E-value=27 Score=37.39 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=22.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++.|+|- .||||+...+..+++..|+++.
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~ 394 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVR 394 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 4456654 4899999999999999998874
No 284
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=42.00 E-value=27 Score=39.74 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=0.0
Q ss_pred eeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhc-----------------CCCeeecccCcccc
Q 020059 29 MSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHL-----------------GIEAFVGGNLGNPL 82 (331)
Q Consensus 29 l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~-----------------g~~~~~~g~~g~~~ 82 (331)
|..+.+-.+.- ...-.||=||| ||||+..+|+-.|... |+++..+.++|.|+
T Consensus 454 leql~~~Iq~n-ep~LLVGeTGt-GKTT~IQ~La~~l~~kltvin~sqqte~sd~lgGykpIn~~tl~lpl 522 (4600)
T COG5271 454 LEQLLWNIQNN-EPTLLVGETGT-GKTTMIQYLALKLHFKLTVINKSQQTEMSDDLGGYKPINGSTLGLPL 522 (4600)
T ss_pred HHHHHHHhccC-CceEEEecCCC-chhhHHHHHHHHhhhhheehhhhhhccchhhcCCcccCCCcccccch
No 285
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=41.81 E-value=23 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=21.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 366799999997 89999999987765
No 286
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=41.66 E-value=48 Score=26.29 Aligned_cols=30 Identities=27% Similarity=0.239 Sum_probs=22.2
Q ss_pred HhhCCCCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 36 AQVIPRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 36 ~~~~~~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
++.+ +...+|.+.|.. ||||.+..+...|.
T Consensus 16 ~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 16 AKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3444 466799999974 79998888877763
No 287
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=41.54 E-value=21 Score=32.47 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
+...++++-|-| ||||+-.+|..+++..
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 356799999999 5999999999888753
No 288
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=41.30 E-value=29 Score=28.70 Aligned_cols=27 Identities=30% Similarity=0.349 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
...+..|+|-| ||||+...|..+|-..
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~ 46 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQ 46 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 34677788766 7999999999999653
No 289
>PLN02318 phosphoribulokinase/uridine kinase
Probab=41.27 E-value=29 Score=34.89 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+|+|+|-+ ||||++..|...+.
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 355799999975 79999999998874
No 290
>PRK04296 thymidine kinase; Provisional
Probab=40.44 E-value=43 Score=28.14 Aligned_cols=32 Identities=25% Similarity=0.230 Sum_probs=18.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.++-|||.. ||||....+..-+..+|.++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 477889985 55554444444444567776443
No 291
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=39.90 E-value=33 Score=28.03 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|.| ||||...+|..++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 367799999997 89999999887665
No 292
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=39.82 E-value=36 Score=29.20 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCc-cCCChhhhhhhhcc
Q 020059 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQ-ESNGFEKLIEPLNH 323 (331)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~-~~~~~~~l~~~l~~ 323 (331)
+.+.|||++-+.+|+.++..+..+.++.+++++|+...-.... ....+..+++.++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~GD~~Q~D~~~~~~nGl~~~~~~~~~ 177 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRIGEGSKIIITGDPSQIDLPLDYNNGLTYAIERLKG 177 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEEE--------------THHHHHHTTT
T ss_pred ceEEEEecccCCCHHHHHHHHcccCCCcEEEEecCceeecCCCCCCchHHHHHHHhcC
Confidence 4577888877888999999999998888999999886432211 12345555555543
No 293
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=39.62 E-value=29 Score=27.19 Aligned_cols=21 Identities=43% Similarity=0.717 Sum_probs=16.3
Q ss_pred EEEEeCCC--ChHhHHHHHHHHH
Q 020059 45 ILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+|.|+|.+ ||||.+..|+.-|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46777765 7999999888766
No 294
>PRK07261 topology modulation protein; Provisional
Probab=39.58 E-value=33 Score=28.26 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=14.4
Q ss_pred EEEeCCC--ChHhHHHHHHHHH
Q 020059 46 LAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 46 I~VtGT~--GKTTt~~~l~~iL 65 (331)
|.|.|.. ||||.+..|+..+
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 5555554 8999999886554
No 295
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=39.55 E-value=41 Score=28.41 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=15.1
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHH
Q 020059 45 ILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.|.|+|.. ||||+...+..-+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 56778765 59999886544444
No 296
>PRK06851 hypothetical protein; Provisional
Probab=39.54 E-value=50 Score=31.10 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=26.9
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
..+++.++| ..||||+..-+...+.+.|+.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~V 61 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDV 61 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 457899999 6789999999999999889886
No 297
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=39.49 E-value=22 Score=32.48 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+...++++.|.| ||||+..+|..++..
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p 59 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHP 59 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 356799999998 799999999988764
No 298
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=38.62 E-value=78 Score=28.75 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=26.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
++..+|.|+|++ ||||+...+-..|........+.|..+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~ 144 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTV 144 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcH
Confidence 578899999986 68887777776665543222334444433
No 299
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=38.61 E-value=46 Score=28.08 Aligned_cols=27 Identities=30% Similarity=0.711 Sum_probs=20.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHH--HHHhcCC
Q 020059 44 KILAVTGTN--GKSTVVTFVGQ--MLNHLGI 70 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~--iL~~~g~ 70 (331)
+++++||-| ||||...++.. ++.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~ 59 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGL 59 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHHcCC
Confidence 689999988 69999888772 3445553
No 300
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=38.12 E-value=26 Score=29.58 Aligned_cols=26 Identities=31% Similarity=0.571 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||...+|.-++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999997 89999999876654
No 301
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=37.62 E-value=49 Score=27.34 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=19.6
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
|++-||| -.||||+..-+-. ....|.+++..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI 33 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVI 33 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEE
Confidence 5677887 4789988555544 45678887653
No 302
>PRK13947 shikimate kinase; Provisional
Probab=37.62 E-value=39 Score=27.44 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=16.8
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 020059 45 ILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtG--T~GKTTt~~~l~~iL 65 (331)
.|.+.| -.||||++.+|+..|
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 356665 469999999999888
No 303
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.48 E-value=26 Score=31.22 Aligned_cols=26 Identities=27% Similarity=0.577 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||...+|.-++.
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999997 89999999987764
No 304
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=37.46 E-value=21 Score=29.76 Aligned_cols=23 Identities=26% Similarity=0.535 Sum_probs=17.8
Q ss_pred cEEEEeC--CCChHhHHHHHHHHHH
Q 020059 44 KILAVTG--TNGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtG--T~GKTTt~~~l~~iL~ 66 (331)
++|-++| |.||||++..|...|.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~ 26 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLP 26 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSS
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 4566665 6899999999998875
No 305
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.38 E-value=28 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 79998888886654
No 306
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=37.33 E-value=65 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.202 Sum_probs=26.6
Q ss_pred cCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCC
Q 020059 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNG 53 (331)
Q Consensus 13 ~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~G 53 (331)
.+|..+ .|++.|+|++-........+ ++...|-|-|++|
T Consensus 42 ~SH~aI-lAr~~giP~ivg~~~~~~~i-~~g~~v~lDg~~G 80 (80)
T PF00391_consen 42 TSHAAI-LARELGIPAIVGVGDATEAI-KDGDWVTLDGNSG 80 (80)
T ss_dssp TSHHHH-HHHHTT-EEEESTTTHHHHS-CTTEEEEEETTTT
T ss_pred cchHHH-HHHHcCCCEEEeeccHhhcc-CCCCEEEEECCCC
Confidence 344443 38899999887776555555 4677888888887
No 307
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.31 E-value=55 Score=22.20 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=20.7
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcC
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g 69 (331)
++..|+|-| ||||.-..+..+|-...
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 478888876 79999999999886543
No 308
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=37.26 E-value=36 Score=36.87 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=24.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.++..|+|- .||||+...+..+++..|+++.
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~ 429 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVV 429 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 345556553 4899999999999999998874
No 309
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=37.14 E-value=76 Score=28.91 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=21.9
Q ss_pred HHHHhhCCCCCcEEEEeCC--CChHhHHHHHHHHHHh
Q 020059 33 DFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNH 67 (331)
Q Consensus 33 ~~~~~~~~~~~~~I~VtGT--~GKTTt~~~l~~iL~~ 67 (331)
+++.+.. +....|.|+|. .||||+...|...+..
T Consensus 123 ~~L~~~v-~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 123 DVLREAV-LARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHH-HcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4444444 34456778875 4899998877766654
No 310
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=37.12 E-value=35 Score=28.41 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.+++.|||- .||||++......|
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 467888875 48999999999998
No 311
>PRK14528 adenylate kinase; Provisional
Probab=36.76 E-value=57 Score=27.22 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=17.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+.|.|+|. .||||.+.+|+.-+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 45777777 58999999998666
No 312
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=36.56 E-value=27 Score=28.25 Aligned_cols=19 Identities=32% Similarity=0.553 Sum_probs=14.7
Q ss_pred EEeCC--CChHhHHHHHHHHH
Q 020059 47 AVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 47 ~VtGT--~GKTTt~~~l~~iL 65 (331)
.+.|- .||||++..|+..|
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 34454 49999999999877
No 313
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=36.56 E-value=38 Score=33.77 Aligned_cols=32 Identities=41% Similarity=0.483 Sum_probs=28.1
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHH-hcCCCee
Q 020059 42 SIKILAVTGTN------GKSTVVTFVGQMLN-HLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~~l~~iL~-~~g~~~~ 73 (331)
+.+.|.||+.+ |||||+-=|.+.|. ..|+++.
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~ 105 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTF 105 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceE
Confidence 56899999986 99999999999999 6788863
No 314
>PRK13975 thymidylate kinase; Provisional
Probab=36.32 E-value=38 Score=28.25 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=20.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHh
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNH 67 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~ 67 (331)
..|.|.|. .||||.+..|+.-|..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46788876 5899999999999964
No 315
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=36.14 E-value=30 Score=28.87 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999987 69999888886654
No 316
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=35.99 E-value=82 Score=26.31 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=18.3
Q ss_pred cCcEEEEEcCCCCCHHHHHHHHhccC
Q 020059 266 IQGVTWVDDSKATNLEATCTGLMDLK 291 (331)
Q Consensus 266 ~~~~~iidD~~a~np~s~~~al~~~~ 291 (331)
.+.+.+|||. .++-..+.++++.++
T Consensus 141 gK~cvIVDDv-ittG~Ti~E~Ie~lk 165 (203)
T COG0856 141 GKRCVIVDDV-ITTGSTIKETIEQLK 165 (203)
T ss_pred CceEEEEecc-cccChhHHHHHHHHH
Confidence 3568899996 777777777777664
No 317
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.74 E-value=60 Score=31.24 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=24.7
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH-HhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQML-NHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL-~~~g~~~~~~g 76 (331)
..+|.++|. .|||||+.-|+.-+ ...|.++.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit 259 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYT 259 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEec
Confidence 457778775 58999999999754 56787775433
No 318
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=35.54 E-value=34 Score=28.49 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCCC--hHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTNG--KSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~~l~~iL~~ 67 (331)
+...+++|.|-|| |||...+|..++.-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 51 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP 51 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 3678999999875 99999999887764
No 319
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=35.50 E-value=38 Score=29.03 Aligned_cols=25 Identities=48% Similarity=0.692 Sum_probs=19.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.+||+||. .||||++ +.|++.|..+
T Consensus 2 ~iVGLTGgiatGKStVs----~~f~~~G~~v 28 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVS----QVFKALGIPV 28 (225)
T ss_pred eEEEeecccccChHHHH----HHHHHcCCcE
Confidence 58999997 6899975 4666778765
No 320
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=35.47 E-value=26 Score=31.89 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.2
Q ss_pred eCCCChHhHHHHHHHHHHhcC
Q 020059 49 TGTNGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~g 69 (331)
.|.|||||...+|..++-...
T Consensus 84 ~g~nGKStl~~~l~~l~G~~~ 104 (304)
T TIGR01613 84 NGGNGKSTFQNLLSNLLGDYA 104 (304)
T ss_pred CCCCcHHHHHHHHHHHhChhh
Confidence 489999999999999996644
No 321
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=35.39 E-value=23 Score=29.21 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=16.6
Q ss_pred EEEeCCCChHhHHHHHHHHHHh
Q 020059 46 LAVTGTNGKSTVVTFVGQMLNH 67 (331)
Q Consensus 46 I~VtGT~GKTTt~~~l~~iL~~ 67 (331)
|++-| .||||++..|++++.+
T Consensus 5 IAtiG-CGKTTva~aL~~LFg~ 25 (168)
T PF08303_consen 5 IATIG-CGKTTVALALSNLFGE 25 (168)
T ss_pred ecCCC-cCHHHHHHHHHHHcCC
Confidence 33334 7999999999999965
No 322
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=35.26 E-value=33 Score=28.89 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
++..+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999997 89999998876553
No 323
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=35.17 E-value=63 Score=28.82 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=18.6
Q ss_pred HHHhhCCCCCcEEEEeCCC--ChHhHHHHH-HHH
Q 020059 34 FAAQVIPRSIKILAVTGTN--GKSTVVTFV-GQM 64 (331)
Q Consensus 34 ~~~~~~~~~~~~I~VtGT~--GKTTt~~~l-~~i 64 (331)
.+.++.......|.|+|.. |||||...+ .++
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3344442344578888865 788887643 443
No 324
>PF04693 DDE_Tnp_2: Archaeal putative transposase ISC1217; InterPro: IPR006783 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the putative transposase ISC1217 from archaebacteria. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.16 E-value=36 Score=30.95 Aligned_cols=46 Identities=24% Similarity=0.411 Sum_probs=31.9
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCc---EEEEEcCCCCCHH
Q 020059 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQG---VTWVDDSKATNLE 281 (331)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~---~~iidD~~a~np~ 281 (331)
+..+|++.+.+.+.|.+... .+=++.+..-..+ +.||||++.|..-
T Consensus 50 a~~~g~dY~~~Lk~Ld~la~-~~~~~~vk~~v~~~~v~vIiDDt~dhk~y 98 (327)
T PF04693_consen 50 AQTFGMDYENLLKNLDKLAN-ADLLEAVKKVVKGHPVVVIIDDTVDHKLY 98 (327)
T ss_pred HHHhCccHHHHHHHhhhhhc-cCchhhhhhhccCCceEEEEecccchhhh
Confidence 45579999999999988775 3666665322233 6889998777643
No 325
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=34.98 E-value=36 Score=32.82 Aligned_cols=32 Identities=34% Similarity=0.398 Sum_probs=28.3
Q ss_pred CCcEEEEeCCC------ChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGTN------GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~------GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.+.|.||+-| |||||+-=|.+.|...|+++.
T Consensus 51 ~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i 88 (554)
T COG2759 51 DGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAI 88 (554)
T ss_pred CceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchhe
Confidence 57899999865 999999999999999998863
No 326
>PRK12378 hypothetical protein; Provisional
Probab=34.95 E-value=1.6e+02 Score=25.83 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCC-CceeEEe---eecCcEEEEEcCCCCCHHHHHHHHhc
Q 020059 225 NAAVAALSVLGLDIGVDVEALNSTIEILRTPP-HRMQIVH---RDIQGVTWVDDSKATNLEATCTGLMD 289 (331)
Q Consensus 225 NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~-gR~e~~~---~~~~~~~iidD~~a~np~s~~~al~~ 289 (331)
|..++.++..|...++|.+.|.++|++-.+.. .-++.+. ...+|+.||.++.-.|..-+..-++.
T Consensus 44 N~~Lr~aI~~Ak~~nmPkd~IerAIkk~~g~~~~~~~e~~YEgygPgGvaiiVe~lTDN~nRt~~~vr~ 112 (235)
T PRK12378 44 NPALRFVIERAKKANVPKDVIERAIKKAKGGGGEDYEEVRYEGFGPNGVMVIVECLTDNVNRTVANVRS 112 (235)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCCCceEEEEEEEEcCCCcEEEEEECCCCHHHHHHHHHH
Confidence 43333322677888999999999999876532 2233221 13577888888855565555544443
No 327
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=34.94 E-value=43 Score=30.24 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCe
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~ 72 (331)
++|.+| +||||.+.-|.+-|++.+.+.
T Consensus 24 VvGMAG-SGKTTF~QrL~~hl~~~~~pp 50 (366)
T KOG1532|consen 24 VVGMAG-SGKTTFMQRLNSHLHAKKTPP 50 (366)
T ss_pred EEecCC-CCchhHHHHHHHHHhhccCCC
Confidence 455556 499999999999998876543
No 328
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=34.56 E-value=54 Score=25.17 Aligned_cols=43 Identities=19% Similarity=0.069 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCC-c--cCCChhhhhh
Q 020059 277 ATNLEATCTGLMDLK----GHKCVILLGGQAKVLNG-Q--ESNGFEKLIE 319 (331)
Q Consensus 277 a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~-~--~~~~~~~l~~ 319 (331)
..||.++..+|+.+. ++.+++++.+....|.. + |+.||++|.+
T Consensus 2 vKNP~G~n~~l~~i~~~~~~~~~~~~lNd~~aDG~DvSWiWDvdFE~L~~ 51 (113)
T PF08353_consen 2 VKNPAGFNEVLDMIASDPGPKSVLIALNDNYADGRDVSWIWDVDFEKLAD 51 (113)
T ss_pred CcCcHHHHHHHHHHHhCCCCceEEEEecCCCCCCccceEEeecCHHHHhc
Confidence 369999999998872 35667777766655543 4 8999999864
No 329
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=34.53 E-value=54 Score=28.74 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.7
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCC
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~ 71 (331)
++.|.|+| .+||||-+.-|...|++.|.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 46788998 689999999999999999955
No 330
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=34.48 E-value=41 Score=32.06 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=19.2
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHH
Q 020059 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~~l~~iL 65 (331)
...+.|+|+| +.||||.+..|+..+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3567888987 579999998887644
No 331
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.40 E-value=63 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+..+|++.|.| |||||...|+..+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45688888887 6999999998654
No 332
>PRK00110 hypothetical protein; Validated
Probab=34.32 E-value=1.2e+02 Score=26.91 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=37.7
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC--C-----CceeEEeeecCcEEEEEcCCCCCHHHHHHHHhc
Q 020059 233 VLGLDIGVDVEALNSTIEILRTP--P-----HRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (331)
Q Consensus 233 a~~~~lg~~~~~i~~~l~~~~~~--~-----gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (331)
..|...++|.+.|.++|++..+- . -++|-. ..+|+.+|.++.-.|..-+..-++.
T Consensus 54 ~~Ak~~nmPkd~IerAIkk~~g~~~~~~~~e~~YEg~--gP~GvaiiVe~lTDN~nRt~~~vR~ 115 (245)
T PRK00110 54 DKAKAANMPKDNIERAIKKGTGELDGANYEEIRYEGY--GPGGVAIIVEALTDNRNRTAAEVRH 115 (245)
T ss_pred HHHHHhCCCHHHHHHHHHHhcCCCCccceEEEEEEEE--cCCCeEEEEEEecCCHHHHHHHHHH
Confidence 77788899999999999988763 2 233333 3577888888855565555444443
No 333
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=33.86 E-value=30 Score=29.66 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..++++.|-| ||||+..+|..++.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 356799999997 79999999887764
No 334
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=33.78 E-value=77 Score=27.79 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=37.9
Q ss_pred HHHHHcCCCHHHHHHHhhcCCCC-------CCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhc
Q 020059 233 VLGLDIGVDVEALNSTIEILRTP-------PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMD 289 (331)
Q Consensus 233 a~~~~lg~~~~~i~~~l~~~~~~-------~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~ 289 (331)
..|...++|.+.|.++|++..+. ..++|.. ..+|+.+|.++.-.|..-+..-++.
T Consensus 50 ~~Ak~~nmPk~~IerAIkk~~~~~~~~~~~~~~yEg~--gP~Gvaiive~lTDN~nRt~~~ir~ 111 (234)
T PF01709_consen 50 EKAKKANMPKDNIERAIKKASGKSDGANYEEITYEGY--GPGGVAIIVECLTDNKNRTVSDIRS 111 (234)
T ss_dssp HHHHHTT--HHHHHHHHHHCCSTSST---EEEEEEEE--ETTTEEEEEEEEES-HHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHhcCcCCCCcCceEEEEEEE--cCCCcEEEEEEeCCCHhHHHHHHHH
Confidence 77888999999999999998873 1345544 3678988888866677666655554
No 335
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=33.78 E-value=35 Score=30.16 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366899999987 89999999986664
No 336
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=33.71 E-value=36 Score=30.05 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|-| ||||...+|.-++.
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 467899999997 89999999987764
No 337
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=33.43 E-value=46 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=18.7
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.++.++|.+ ||||....|...+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567777765 79999999998875
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=33.42 E-value=74 Score=28.57 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=27.8
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+...|++.| ..||||+...+...+...|.+++....
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~ 111 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 111 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 447888886 568999999999999887777755443
No 339
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=33.25 E-value=49 Score=30.78 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=21.2
Q ss_pred HHhhCCCCCcEEEEeCCCC--hHhHHHHHHHHHH
Q 020059 35 AAQVIPRSIKILAVTGTNG--KSTVVTFVGQMLN 66 (331)
Q Consensus 35 ~~~~~~~~~~~I~VtGT~G--KTTt~~~l~~iL~ 66 (331)
+.+++......|.|+|..| ||||...+..-+.
T Consensus 114 l~~~~~~~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 114 LRELAERPRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred HHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3344323456899999876 9999986655443
No 340
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=33.25 E-value=44 Score=28.23 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 45 ILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+++|.|.| ||||+...|..++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l~~~ 48 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhcc
Confidence 88899998 799999999888743
No 341
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=33.23 E-value=37 Score=29.01 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 89999998887664
No 342
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=33.16 E-value=39 Score=32.02 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=26.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
...++.|-|- .||||.+.||+.-|-+.|+++..
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~i 106 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAI 106 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEE
Confidence 3456666653 59999999999999999998754
No 343
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=32.98 E-value=45 Score=28.68 Aligned_cols=26 Identities=31% Similarity=0.554 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|.| ||||...+|..++.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 366799999987 79998888887654
No 344
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.94 E-value=39 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 366799999997 69999999987764
No 345
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=32.71 E-value=37 Score=29.87 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=19.0
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHH
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQM 64 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~i 64 (331)
..|.|+|.| +.||||+.+.|...
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCC
Confidence 678899998 67999999888754
No 346
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=32.50 E-value=56 Score=32.28 Aligned_cols=24 Identities=42% Similarity=0.548 Sum_probs=20.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
...+|+|.|.+ ||||++..|+.-|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 55799999975 7999999999888
No 347
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=32.28 E-value=60 Score=25.47 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=21.5
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 46 I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+.|+|. .||||.+..+...+...|.++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 345554 4899999999888877766664433
No 348
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=32.09 E-value=46 Score=32.36 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=21.8
Q ss_pred CCCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 40 PRSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 40 ~~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
++..+++||-|+| ||||+..+|+--|.
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 3677899999999 58998888876654
No 349
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.03 E-value=34 Score=29.27 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|-| ||||...+|..++.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 59998888876654
No 350
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=32.02 E-value=34 Score=31.30 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHHH
Q 020059 41 RSIKILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~~l~~iL 65 (331)
++...|.++| -.||||+..+|+..|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4667899998 468999999998877
No 351
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=31.95 E-value=37 Score=29.47 Aligned_cols=26 Identities=19% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++++|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366899999997 79999988887664
No 352
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.91 E-value=37 Score=30.39 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||+..+|.-++.
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 367899999998 79999999987664
No 353
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=31.89 E-value=40 Score=28.94 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|-| ||||...+|.-++.
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 467899999987 79999999887664
No 354
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=31.76 E-value=39 Score=28.44 Aligned_cols=26 Identities=31% Similarity=0.546 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|-| ||||...+|.-++.
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999987 79999888886664
No 355
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=31.52 E-value=39 Score=28.51 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|..++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 367899999987 69999888876554
No 356
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=31.51 E-value=53 Score=28.12 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=17.8
Q ss_pred cEEEEeCCC--ChHhHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~i 64 (331)
.+++|-|.| ||||+-.+|..+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~~~ 48 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSMLFV 48 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 689999998 799999988744
No 357
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=31.44 E-value=57 Score=28.00 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
....+++|.|-| ||||...+|.-++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 366899999987 6999999998877
No 358
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.34 E-value=41 Score=29.06 Aligned_cols=27 Identities=15% Similarity=0.388 Sum_probs=22.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
....+++|+|-| ||||...+|...+..
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 366899999997 899999999877653
No 359
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=31.16 E-value=41 Score=28.43 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=20.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|..++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466799999987 68888888876654
No 360
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=31.11 E-value=52 Score=34.21 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=22.8
Q ss_pred EEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+.|.+| .||||+...+..+++..|+++..
T Consensus 373 l~G~aG-TGKTtll~~i~~~~~~~g~~V~~ 401 (744)
T TIGR02768 373 VVGRAG-TGKSTMLKAAREAWEAAGYRVIG 401 (744)
T ss_pred EEecCC-CCHHHHHHHHHHHHHhCCCeEEE
Confidence 344445 58999999999999999988743
No 361
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=30.98 E-value=45 Score=28.20 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999987 79998888886654
No 362
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.79 E-value=51 Score=27.58 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=18.9
Q ss_pred CCCcEEEEeCCCC--hHhHHHHHHHH
Q 020059 41 RSIKILAVTGTNG--KSTVVTFVGQM 64 (331)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~~l~~i 64 (331)
+...+++|+|.|| |||...+|..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3668999999985 88888877744
No 363
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=30.74 E-value=41 Score=28.52 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 79998888876654
No 364
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=30.72 E-value=57 Score=28.13 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=19.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+|+|+|.+ ||||++.+|+.-|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999875 79999999987664
No 365
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=30.72 E-value=41 Score=29.06 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+..+++|+|.| ||||...+|.-++.
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999987 69998888886654
No 366
>PRK08537 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=30.68 E-value=3e+02 Score=22.55 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcC
Q 020059 219 GRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEIL 252 (331)
Q Consensus 219 G~~n~~NalaA~~~a~~~~lg~-~~~~i~~~l~~~ 252 (331)
|.-...|..+.- +++..+|+ +.+.+.+++++.
T Consensus 126 g~~~~~N~v~lG--a~~~~~gl~~~e~~~~~i~~~ 158 (177)
T PRK08537 126 GLSIVANIVMLG--ALTKLTGIVSKEAIEKAILDS 158 (177)
T ss_pred CChHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHH
Confidence 444455776554 56677898 999999999854
No 367
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.64 E-value=41 Score=28.73 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999987 79999999987654
No 368
>PRK13946 shikimate kinase; Provisional
Probab=30.63 E-value=56 Score=27.13 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=18.0
Q ss_pred cEEEEeC--CCChHhHHHHHHHHH
Q 020059 44 KILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtG--T~GKTTt~~~l~~iL 65 (331)
+.|.++| -.||||+..+|+.-|
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 4566766 469999999999988
No 369
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=30.63 E-value=35 Score=31.73 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=18.2
Q ss_pred CChHhHHHHHHHHHHhcCCC
Q 020059 52 NGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~~g~~ 71 (331)
+||||.++.|..+|.+.|..
T Consensus 65 HGKTTLTaAITkila~~g~A 84 (449)
T KOG0460|consen 65 HGKTTLTAAITKILAEKGGA 84 (449)
T ss_pred CCchhHHHHHHHHHHhcccc
Confidence 89999999999999988754
No 370
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=30.63 E-value=64 Score=26.46 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=18.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
++|.++|. .||||.+..|...+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56777774 689999999988764
No 371
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.53 E-value=50 Score=28.50 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 366799999997 79999999987764
No 372
>PRK10908 cell division protein FtsE; Provisional
Probab=30.45 E-value=55 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999997 89999999886654
No 373
>PRK00023 cmk cytidylate kinase; Provisional
Probab=30.39 E-value=62 Score=28.04 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.0
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
..+|+|+|. .||||++.+|+.-|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 468999987 589999999988774
No 374
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=30.30 E-value=43 Score=30.03 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||+..+|.-++.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 367899999997 89999999987765
No 375
>PRK14709 hypothetical protein; Provisional
Probab=30.24 E-value=36 Score=33.22 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=17.8
Q ss_pred eCCCChHhHHHHHHHHHHhc
Q 020059 49 TGTNGKSTVVTFVGQMLNHL 68 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~ 68 (331)
+|.|||||...+|..+|-..
T Consensus 213 ~G~NGKSt~~~~i~~llG~~ 232 (469)
T PRK14709 213 GGGNGKSVFLNVLAGILGDY 232 (469)
T ss_pred CCCCcHHHHHHHHHHHHhhh
Confidence 58899999999999999753
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=30.23 E-value=45 Score=26.73 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+..+++|+|.| ||||...+|..++..
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 56799999987 799988888766643
No 377
>PRK04182 cytidylate kinase; Provisional
Probab=30.05 E-value=52 Score=26.75 Aligned_cols=21 Identities=33% Similarity=0.719 Sum_probs=17.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+|.|+|. .||||++..|+.-|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 5777775 58999999998776
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=30.05 E-value=62 Score=28.37 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCcEEEEeCCCC--hHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGTNG--KSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~~l~~iL~~ 67 (331)
+..+.+|.|-|| |||+...|..+|..
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456788999885 99999999999964
No 379
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=30.02 E-value=51 Score=29.25 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 466899999986 89999999998775
No 380
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=30.00 E-value=44 Score=28.85 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|.| ||||...+|..++.
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999997 79999999987775
No 381
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=29.74 E-value=57 Score=25.89 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+...+++|+|.| ||||...+|...+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 366799999987 79998888876654
No 382
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=29.74 E-value=46 Score=28.22 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|.| ||||...+|..++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999986 69988888876654
No 383
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=29.64 E-value=43 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366899999998 69999988887664
No 384
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=29.62 E-value=47 Score=28.81 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||...+|.-++.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 366799999987 79998888876664
No 385
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.49 E-value=42 Score=28.41 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|-| ||||...+|.-++.
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 79999999886654
No 386
>PRK06851 hypothetical protein; Provisional
Probab=29.37 E-value=94 Score=29.31 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=26.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.+.+.|+| -.||||....+..-+.+.|+.+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~ 246 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVE 246 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEE
Confidence 46788888 46899999999999999998873
No 387
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=29.28 E-value=46 Score=28.41 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 69999888876654
No 388
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.16 E-value=50 Score=28.47 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|+.++.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 79999998887765
No 389
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=29.12 E-value=60 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 366799999996 89999999987664
No 390
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=29.06 E-value=43 Score=28.96 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|-| ||||...+|.-++.
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999987 79999999987664
No 391
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.98 E-value=56 Score=28.34 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=20.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
..+.+|.|-| ||||+..+|..+|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~l~ 48 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFVLS 48 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4588899988 79999999998875
No 392
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.97 E-value=50 Score=28.72 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999997 79999888876654
No 393
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=28.78 E-value=1e+02 Score=27.68 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=46.1
Q ss_pred HHHHcCCCHHHHHHHhhcCCCC----CCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCC
Q 020059 234 LGLDIGVDVEALNSTIEILRTP----PHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQA 303 (331)
Q Consensus 234 ~~~~lg~~~~~i~~~l~~~~~~----~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~ 303 (331)
.....|-+..++++-|+.|+.. ..||-+++ .+|..+.+ ....+++...+..+. +-+.|+|.|+..
T Consensus 8 ~~~~~~~~~~e~~~~l~~f~~~~~~~~~~f~VIK--~GG~~~~~---~~~~~~l~~dla~L~~lGl~~VlVHGggp 78 (271)
T cd04236 8 FLHQKGGDPREARYWLTQFQIAMPNDWPAFAVLE--VDHSVFRS---LEMVQSLSFGLAFLQRMDMKLLVVMGLSA 78 (271)
T ss_pred HHHHhCCCHHHHHHHHHHhhccCCCCCCCEEEEE--EChhhhcC---chhHHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 4567799999999999999986 37999995 55544433 345666665554442 458899999854
No 394
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=28.76 E-value=46 Score=28.83 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 367899999997 79998888876654
No 395
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=28.76 E-value=56 Score=26.88 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|.| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 366799999987 69999888887654
No 396
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=28.68 E-value=55 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..+++|.|.| ||||...+|.-++..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 54 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVP 54 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC
Confidence 366799999987 699998888877653
No 397
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=61 Score=33.21 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=44.4
Q ss_pred cccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 11 FQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 11 ~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
++.||=.+.+.+++- +..++.-.+.-..+.++++..|- .||||...-|+..|.....+..++|-
T Consensus 321 Ld~dHYGLekVKeRI---lEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGv 386 (782)
T COG0466 321 LDKDHYGLEKVKERI---LEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGV 386 (782)
T ss_pred hcccccCchhHHHHH---HHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCcc
Confidence 567777777777763 33444333332236689999986 58999999999999877666656653
No 398
>COG3910 Predicted ATPase [General function prediction only]
Probab=28.65 E-value=44 Score=28.50 Aligned_cols=49 Identities=20% Similarity=0.157 Sum_probs=30.3
Q ss_pred cCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 13 LKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 13 ~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
+++|+..+.---.+|++..++. ++ ..+.|+-.|||-| ||+|..+-|+..
T Consensus 10 ~ekve~~~eYp~slPa~r~l~~--~L-eF~apIT~i~GENGsGKSTLLEaiA~~ 60 (233)
T COG3910 10 LEKVESFEEYPFSLPAFRHLEE--RL-EFRAPITFITGENGSGKSTLLEAIAAG 60 (233)
T ss_pred hhcccchhhCcccchHHHhhhh--hc-cccCceEEEEcCCCccHHHHHHHHHhh
Confidence 4555555444456666666654 22 2467899999988 477766655543
No 399
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=28.59 E-value=64 Score=27.42 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=19.3
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+++|.|.| ||||....|...|.
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~ 47 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALT 47 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHc
Confidence 489999988 79999988887765
No 400
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=28.58 E-value=40 Score=31.31 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+...+++|.|-| ||||...+|.-++.-
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p 57 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERP 57 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 366899999987 899999999987753
No 401
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=28.53 E-value=51 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.597 Sum_probs=20.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+++|.|.| ||||...+|..++.
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56799999987 79999999886664
No 402
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=28.53 E-value=56 Score=27.53 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
++..+++|+|.| ||||...+|.-++.
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 467899999988 59998888876654
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=28.51 E-value=47 Score=26.27 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=14.0
Q ss_pred EEeCC--CChHhHHHHHHHHH
Q 020059 47 AVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 47 ~VtGT--~GKTTt~~~l~~iL 65 (331)
.++|. .||||++..|...+
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc
Confidence 34444 39999999998875
No 404
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=28.44 E-value=52 Score=27.16 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..+++|.|-| ||||...+|.-++..
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~ 51 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP 51 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 466799999987 799999888877653
No 405
>PRK13976 thymidylate kinase; Provisional
Probab=28.43 E-value=58 Score=27.91 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=17.7
Q ss_pred CChHhHHHHHHHHHHhc-C-CCe
Q 020059 52 NGKSTVVTFVGQMLNHL-G-IEA 72 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~~-g-~~~ 72 (331)
.||||.+.+|+.-|+.. | .++
T Consensus 11 sGKsTq~~~L~~~L~~~~g~~~v 33 (209)
T PRK13976 11 SGKTTQSRLLAEYLSDIYGENNV 33 (209)
T ss_pred CCHHHHHHHHHHHHHHhcCCcce
Confidence 59999999999999986 5 344
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=28.40 E-value=80 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=21.6
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 46 LAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 46 I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
|.+||- .||||...-+-+.|+..|.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 668886 489999999999998887765
No 407
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=28.40 E-value=44 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....++++.|-| ||||+..+|..++.
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 79999999987765
No 408
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=28.35 E-value=51 Score=28.32 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+..+++|.|.| ||||...+|..++.
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999986 79999998886654
No 409
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.35 E-value=58 Score=26.60 Aligned_cols=27 Identities=22% Similarity=0.440 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
....+++|.|.| ||||...+|.-++..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~ 54 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP 54 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 367799999987 699999998887653
No 410
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=28.34 E-value=47 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+++|.|.| ||||...+|..++
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 366799999997 8999988888766
No 411
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=28.31 E-value=52 Score=27.87 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 79999888887664
No 412
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=28.18 E-value=45 Score=28.23 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999987 79998888887654
No 413
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=28.12 E-value=64 Score=26.81 Aligned_cols=21 Identities=38% Similarity=0.376 Sum_probs=15.8
Q ss_pred CCCcEEEEeCCCC--hHhHHHHH
Q 020059 41 RSIKILAVTGTNG--KSTVVTFV 61 (331)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~~l 61 (331)
....+++|+|.|| |||.-.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHH
Confidence 3667999999985 67766655
No 414
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.10 E-value=49 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||...+|.-++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999987 79999888887654
No 415
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=28.05 E-value=57 Score=29.04 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 466799999986 79999999998875
No 416
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=27.98 E-value=47 Score=26.98 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=22.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
....+++|.|-| ||||...+|.-++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 466799999987 899999999877653
No 417
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=27.87 E-value=50 Score=28.83 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999987 79998888886654
No 418
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=27.83 E-value=1.1e+02 Score=28.07 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=18.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.-+|.|+|++ ||||++..|++-|
T Consensus 92 p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3488999885 7999999888777
No 419
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=27.82 E-value=42 Score=27.11 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=14.4
Q ss_pred CChHhHHHHHHHHHHh
Q 020059 52 NGKSTVVTFVGQMLNH 67 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~ 67 (331)
.||||+..+|+..|.-
T Consensus 3 sGKStvg~~lA~~L~~ 18 (158)
T PF01202_consen 3 SGKSTVGKLLAKRLGR 18 (158)
T ss_dssp SSHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHhCC
Confidence 6999999999999964
No 420
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=27.82 E-value=62 Score=26.08 Aligned_cols=21 Identities=33% Similarity=0.708 Sum_probs=16.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+|.|+|. .||||++..|+.-|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 6788886 47999999888765
No 421
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=27.81 E-value=67 Score=28.14 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.2
Q ss_pred CCChHhHHHHHHHHHHhcCCCee
Q 020059 51 TNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 51 T~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
..||||.+..|+.-|...|+++.
T Consensus 9 GSGKST~a~~La~~l~~~~~~v~ 31 (249)
T TIGR03574 9 GVGKSTFSKELAKKLSEKNIDVI 31 (249)
T ss_pred CCCHHHHHHHHHHHHHHcCCceE
Confidence 46999999999999988776653
No 422
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=27.75 E-value=60 Score=33.53 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+|+|+|+. ||||++..|+..|.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~ 26 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG 26 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999985 79999999999883
No 423
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=27.65 E-value=59 Score=24.63 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.0
Q ss_pred EEeCC--CChHhHHHHHHHHHH
Q 020059 47 AVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 47 ~VtGT--~GKTTt~~~l~~iL~ 66 (331)
-+.|- .|||+++..+++-|.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT
T ss_pred EEECcCCCCeeHHHHHHHhhcc
Confidence 35555 699999999999884
No 424
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=27.57 E-value=61 Score=28.26 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+|+|||- .||||++.++ ++.|..+
T Consensus 2 iI~i~G~~gsGKstva~~~----~~~g~~~ 27 (227)
T PHA02575 2 LIAISGKKRSGKDTVADFI----IENYNAV 27 (227)
T ss_pred EEEEeCCCCCCHHHHHHHH----HhcCCcE
Confidence 7899986 6899998877 4455544
No 425
>PRK14530 adenylate kinase; Provisional
Probab=27.56 E-value=69 Score=27.33 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+.|.|.|. .||||.+..|+..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 35667765 48999999998777
No 426
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=27.46 E-value=61 Score=26.53 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=17.1
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
++|+|.|.+ ||||.+..|...+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 578888877 7999888877754
No 427
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=27.46 E-value=56 Score=27.78 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|.| ||||...+|..++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 356799999987 69999888876654
No 428
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=27.40 E-value=56 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=20.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+...+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999986 68888888877654
No 429
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=27.38 E-value=50 Score=27.98 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366789999987 79999988887664
No 430
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=27.15 E-value=53 Score=28.25 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999987 79999888886664
No 431
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.13 E-value=54 Score=28.67 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|.| ||||...+|.-++.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 356799999997 79998888887664
No 432
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=27.11 E-value=50 Score=29.26 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||...+|..++.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999987 79998888887654
No 433
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=27.09 E-value=62 Score=27.57 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|.-++.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 356799999997 79998888876654
No 434
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=27.07 E-value=47 Score=30.14 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..++++.|-| ||||+..+|.-++..
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 366799999987 799999999987753
No 435
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.06 E-value=48 Score=28.64 Aligned_cols=26 Identities=38% Similarity=0.609 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 69999998876654
No 436
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=26.86 E-value=59 Score=28.11 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|.| ||||...+|.-++.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 366899999987 69999999987765
No 437
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=26.85 E-value=85 Score=26.76 Aligned_cols=29 Identities=31% Similarity=0.541 Sum_probs=21.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH--HHhcCC
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQM--LNHLGI 70 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~i--L~~~g~ 70 (331)
+..+++|||.| ||||...++..+ |.+.|.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~ 60 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMAQIGC 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 45789999987 899988887644 444443
No 438
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=26.82 E-value=56 Score=28.68 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.6
Q ss_pred CChHhHHHHHHHHHHhcCCCeee
Q 020059 52 NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.||||-+.-+++.++..|+++.+
T Consensus 7 SGKTT~~~~~~~~~~~~~~~~~~ 29 (238)
T PF03029_consen 7 SGKTTFCKGLSEWLESNGRDVYI 29 (238)
T ss_dssp SSHHHHHHHHHHHHTTT-S-EEE
T ss_pred CCHHHHHHHHHHHHHhccCCceE
Confidence 59999999999999999887743
No 439
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.80 E-value=64 Score=27.77 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 366799999987 69999998887765
No 440
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=26.75 E-value=49 Score=28.08 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 366799999976 79998888875553
No 441
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=26.54 E-value=92 Score=28.01 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=20.1
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhcC
Q 020059 45 ILAVT---GTNGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g 69 (331)
.|+|+ |-.||||++.-|+.+|....
T Consensus 3 ~vAV~sGKGGtGKTTva~~la~~l~~~~ 30 (284)
T COG1149 3 QVAVASGKGGTGKTTVAANLAVLLGDKY 30 (284)
T ss_pred EEEEeecCCCCChhhHHHHHHHHhcccc
Confidence 56666 66789999999999998754
No 442
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.38 E-value=74 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=21.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|.| ||||...+|.-++.
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 366799999987 79999999998775
No 443
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=26.32 E-value=50 Score=28.48 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|..++.
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 356799999987 79998888876654
No 444
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=26.31 E-value=71 Score=27.66 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=23.1
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
..+|+|-| ..||+|++..|+.-|.-....+
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldT 35 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDT 35 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecc
Confidence 36888887 4699999999998886554444
No 445
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=26.27 E-value=1e+02 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=16.8
Q ss_pred cEEEEeCCCC--hHhHHHHHHHHHHh
Q 020059 44 KILAVTGTNG--KSTVVTFVGQMLNH 67 (331)
Q Consensus 44 ~~I~VtGT~G--KTTt~~~l~~iL~~ 67 (331)
..|+|+|.+| |||+...+...+..
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~ 27 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ 27 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3688888775 77777766666654
No 446
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=26.18 E-value=57 Score=28.47 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|.-++.
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467899999987 69998888886664
No 447
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.14 E-value=55 Score=27.70 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 69998888886664
No 448
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=26.14 E-value=65 Score=27.95 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=22.9
Q ss_pred cEEEEeCCCChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGTNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
-++|.+|| ||+|-++-+.+=.+..|.++.
T Consensus 7 lV~GpAgS-GKSTyC~~~~~h~e~~gRs~~ 35 (273)
T KOG1534|consen 7 LVMGPAGS-GKSTYCSSMYEHCETVGRSVH 35 (273)
T ss_pred EEEccCCC-CcchHHHHHHHHHHhhCceeE
Confidence 36677774 999999988888888887764
No 449
>PRK10536 hypothetical protein; Provisional
Probab=26.07 E-value=1.3e+02 Score=26.99 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=38.9
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCC-ccCCChhhhhhhhc
Q 020059 267 QGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNG-QESNGFEKLIEPLN 322 (331)
Q Consensus 267 ~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~-~~~~~~~~l~~~l~ 322 (331)
+.+.|||.+.+-+|.-+...+..+..+.++++.|+...-+.- .....+...++.++
T Consensus 177 ~~~vIvDEaqn~~~~~~k~~ltR~g~~sk~v~~GD~~QiD~p~~~~sGL~~~~~~~k 233 (262)
T PRK10536 177 NAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVKSGLSDALERFE 233 (262)
T ss_pred CCEEEEechhcCCHHHHHHHHhhcCCCCEEEEeCChhhccCCCCCCCCHHHHHHHhC
Confidence 567888887777899999999999888889999987643211 11224555555554
No 450
>PRK12338 hypothetical protein; Provisional
Probab=26.04 E-value=71 Score=29.47 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
+..+|.|+|+ .||||++..|+.-|.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 3468999986 589999999998873
No 451
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=26.02 E-value=51 Score=30.64 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=22.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
....++++.|-| ||||+..+|..++.-
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 366799999988 699999999887763
No 452
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=25.98 E-value=54 Score=28.43 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 79999888886654
No 453
>PRK08356 hypothetical protein; Provisional
Probab=25.91 E-value=1.1e+02 Score=25.64 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=20.3
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..+|+|+|. .||||.+.+|. ..|..+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~----~~g~~~is 34 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE----EKGFCRVS 34 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH----HCCCcEEe
Confidence 357889995 68999999994 24665533
No 454
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=25.89 E-value=56 Score=28.73 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=21.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467799999987 79999999987765
No 455
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.83 E-value=58 Score=29.18 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|.-+++
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 466799999987 59998888886665
No 456
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=25.76 E-value=56 Score=29.01 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|.-++.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467799999987 69999998887765
No 457
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=25.68 E-value=69 Score=27.43 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
++..+++|+|-| ||||...+|.-++.
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 466799999987 79999999887764
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=25.63 E-value=66 Score=24.10 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=18.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcC
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g 69 (331)
..+.+.|.. ||||++..+...+...+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 355566554 79999998888887765
No 459
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.63 E-value=1.2e+02 Score=30.29 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=24.6
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhc--CCCeeecc
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL--GIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~--g~~~~~~g 76 (331)
+..+|+++| -.|||||...|...+... |.++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 456888876 458999999998877654 45565433
No 460
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=25.61 E-value=66 Score=31.95 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=19.7
Q ss_pred CCCcEEEEeC--CCChHhHHHHHHHH
Q 020059 41 RSIKILAVTG--TNGKSTVVTFVGQM 64 (331)
Q Consensus 41 ~~~~~I~VtG--T~GKTTt~~~l~~i 64 (331)
.++|.|.|.| |.||||+-.|+++.
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqA 331 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQA 331 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHh
Confidence 5777777776 89999999999864
No 461
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=25.56 E-value=53 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=17.8
Q ss_pred EEEeCC--CChHhHHHHHHHHHHhc
Q 020059 46 LAVTGT--NGKSTVVTFVGQMLNHL 68 (331)
Q Consensus 46 I~VtGT--~GKTTt~~~l~~iL~~~ 68 (331)
+-|.|. .|||.|+.++..-|+..
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhh
Confidence 445544 38999999999999875
No 462
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=25.52 E-value=83 Score=29.53 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=18.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+...|.|+|-+ |||||...+...+.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45688999865 89998877766554
No 463
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=25.40 E-value=56 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|+|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 79999998886654
No 464
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=25.26 E-value=74 Score=27.60 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|.| ||||...+|..++.
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 366899999987 79999999986664
No 465
>PRK08534 pyruvate ferredoxin oxidoreductase subunit gamma; Reviewed
Probab=25.23 E-value=3.9e+02 Score=22.04 Aligned_cols=94 Identities=11% Similarity=0.100 Sum_probs=50.8
Q ss_pred EEEEeCCCChH--hHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccE
Q 020059 45 ILAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTV 122 (331)
Q Consensus 45 ~I~VtGT~GKT--Tt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i 122 (331)
.|-++|.-|-+ |+..+|..++...|+.+...-++|.-. ..+..++-+=+|...+........||+
T Consensus 3 ~i~i~G~gGqGv~tag~ila~a~~~~G~~V~~~~~ygs~~-------------RGG~~~~~vris~~~i~~~~~~~~~D~ 69 (181)
T PRK08534 3 EIRFHGRGGQGAVTAAEILAKAAFEDGKFSQAFPFFGVER-------------RGAPVMAFTRIDDKPIRLRSQIYEPDY 69 (181)
T ss_pred EEEEEEECcchHHHHHHHHHHHHHhcCCeEEEEeccChhh-------------cCCcEEEEEEEcCCcccCcccCCCCCE
Confidence 45566665555 455688888888998875544444221 122223334445443322122246788
Q ss_pred EEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCC
Q 020059 123 SVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFG 164 (331)
Q Consensus 123 ~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~d 164 (331)
.+..+-. .+. ...+...++++|.+|+|.+
T Consensus 70 lva~~~~-----------~~~--~~~~~~~l~~gg~vi~ns~ 98 (181)
T PRK08534 70 VIVQDPT-----------LLD--SVDVTSGLKKDGIIIINTT 98 (181)
T ss_pred EEEcCHH-----------Hhc--chhHhcCcCCCcEEEEECC
Confidence 7766531 111 1123345668999999964
No 466
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=25.22 E-value=65 Score=26.39 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=14.8
Q ss_pred CCCChHhHHHHHHHHH
Q 020059 50 GTNGKSTVVTFVGQML 65 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL 65 (331)
|-.||||++.-|+..|
T Consensus 9 gG~GKSt~a~nLA~~l 24 (179)
T cd03110 9 GGTGKTTVTAALAALL 24 (179)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6679999999999999
No 467
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.07 E-value=58 Score=28.83 Aligned_cols=26 Identities=23% Similarity=0.548 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcC
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g 69 (331)
.-+.+.|- .||||++..++..|...|
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 34445554 489999999999997655
No 468
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=25.00 E-value=58 Score=27.06 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=15.7
Q ss_pred EEEEeCCC--ChHhHHHHHHHHH
Q 020059 45 ILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.|.+.|.+ ||||+..+|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 56666654 7999999997654
No 469
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.99 E-value=57 Score=27.69 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.. .+++|.|-| ||||...+|.-++.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 36 899999987 69999888876654
No 470
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=24.78 E-value=95 Score=30.49 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=17.0
Q ss_pred HHHhhCCCCCcEEEEeCCC--ChHhHHHH
Q 020059 34 FAAQVIPRSIKILAVTGTN--GKSTVVTF 60 (331)
Q Consensus 34 ~~~~~~~~~~~~I~VtGT~--GKTTt~~~ 60 (331)
.+.++.....-+|.|||.. |||||.+.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3344442344578888865 89999863
No 471
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.77 E-value=59 Score=28.39 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+...+++|.|-| ||||...+|..++.
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 356799999987 69999998887664
No 472
>PRK13949 shikimate kinase; Provisional
Probab=24.74 E-value=83 Score=25.81 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=17.5
Q ss_pred EEEEeCC--CChHhHHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.|.|.|. .||||++.+|+..|.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 4666664 589999999999885
No 473
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.72 E-value=61 Score=28.62 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..+++|+|.| ||||...+|.-++..
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 467899999986 799999999977764
No 474
>PRK13948 shikimate kinase; Provisional
Probab=24.65 E-value=91 Score=26.08 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=18.5
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHH
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL 65 (331)
....|.++| -.||||+..+|+.-|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 334566666 479999999999887
No 475
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.65 E-value=1.5e+02 Score=28.54 Aligned_cols=125 Identities=13% Similarity=0.108 Sum_probs=70.9
Q ss_pred eHHHHHHhhCC---CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecccCcccch-hhhhhcccCCCCCCCCcEEE
Q 020059 30 SELDFAAQVIP---RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS-EAAFHCIALPSSKPKFQVAV 103 (331)
Q Consensus 30 ~~~~~~~~~~~---~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~-~~~~~~~~~~~~~~~~~~~V 103 (331)
+.++.+-|.+. =..-+|.|.|-- ||||+---+.+-|.+.+ ++.+..-=.++-. ..+.+++..+ .+.-+..
T Consensus 77 tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~---~~~l~l~ 152 (456)
T COG1066 77 TGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLP---TNNLYLL 152 (456)
T ss_pred CChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCC---ccceEEe
Confidence 34455555542 145689999975 69988888888888887 5533221111111 1111221111 1222455
Q ss_pred EEeccccccccCceecccEEEEecCChhhhhc----cCCHHHHHHHHHHhccccCCCce
Q 020059 104 VEVSSYQMEIPNKYFCPTVSVVLNLTPDHLER----HKTMKNYALTKCHLFSHMVNTKL 158 (331)
Q Consensus 104 lE~~~~~~~~~~~~~~p~i~viTni~~dHl~~----~gt~e~~~~~K~~i~~~~~~~~~ 158 (331)
-|.....+...-...+|++.||=+|.-=|.+. -||..++.+.-..+++..+..+.
T Consensus 153 aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i 211 (456)
T COG1066 153 AETNLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNI 211 (456)
T ss_pred hhcCHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 67665443222123689999998887655543 46888888877777765544443
No 476
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=24.65 E-value=86 Score=25.42 Aligned_cols=21 Identities=38% Similarity=0.381 Sum_probs=16.2
Q ss_pred EEEEeC--CCChHhHHHHHHHHH
Q 020059 45 ILAVTG--TNGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtG--T~GKTTt~~~l~~iL 65 (331)
.|.++| ..||||++..|+.-|
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 455555 359999999999887
No 477
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=24.57 E-value=71 Score=27.92 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMND 57 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 366799999987 79999999887653
No 478
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.48 E-value=54 Score=29.26 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+...+++|.|-| ||||...+|.-++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 79999888886654
No 479
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.48 E-value=71 Score=27.38 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 356789999987 69999988886664
No 480
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=24.47 E-value=75 Score=27.05 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 367799999986 69998888876654
No 481
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=24.39 E-value=60 Score=27.76 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=20.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999987 69998888876553
No 482
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=24.39 E-value=62 Score=29.08 Aligned_cols=26 Identities=31% Similarity=0.530 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|-| ||||...+|.-++.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999987 79999999987764
No 483
>PF14516 AAA_35: AAA-like domain
Probab=24.34 E-value=1.5e+02 Score=27.31 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+....+.|.|.. ||||+..-+.+-+++.|+.+..
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~ 64 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVY 64 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEE
Confidence 447788999986 9999999999999888988753
No 484
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=24.33 E-value=59 Score=28.46 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|+|-| ||||...+|.-++.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 79999988876654
No 485
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=24.29 E-value=1.2e+02 Score=25.82 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=20.4
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
...|+|.|+ .|||+...-+-.-|+.. ++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~ 43 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDE-YKI 43 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhh-CCe
Confidence 368999997 57888777766666655 443
No 486
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.27 E-value=73 Score=28.21 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|..++.
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMND 72 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 366799999987 79999999988753
No 487
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.24 E-value=91 Score=25.46 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
....+++|.|-| ||||...+|.-++..
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 366799999987 689988888877653
No 488
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=24.24 E-value=53 Score=30.31 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||+..+|..++.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 467899999987 79999999998876
No 489
>PRK02496 adk adenylate kinase; Provisional
Probab=24.23 E-value=92 Score=25.65 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=17.2
Q ss_pred EEEEeCC--CChHhHHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.|.|+|. .||||.+..|+.-+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 3667776 599999999987773
No 490
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=24.19 E-value=44 Score=28.54 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=17.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
..++++.|-| ||||+...|...|
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l 52 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYAL 52 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeE
Confidence 4588899888 7999988886544
No 491
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=24.14 E-value=55 Score=29.06 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=15.4
Q ss_pred cEEEEeCCCChHhHHHHHHHHH
Q 020059 44 KILAVTGTNGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT~GKTTt~~~l~~iL 65 (331)
-+.|-+|| |||+.+..++..+
T Consensus 25 LL~G~~Gt-GKT~lA~~la~~l 45 (262)
T TIGR02640 25 HLRGPAGT-GKTTLAMHVARKR 45 (262)
T ss_pred EEEcCCCC-CHHHHHHHHHHHh
Confidence 34555554 9999999998755
No 492
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=24.08 E-value=62 Score=28.43 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|.| ||||...+|.-++.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999987 79999999887664
No 493
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=24.02 E-value=1.7e+02 Score=25.39 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=24.4
Q ss_pred CCcEEEEeCCC--ChHhHH-HHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVV-TFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~-~~l~~iL~~~g~~~~~~g 76 (331)
+..++.|+|.+ ||||.+ .++...++ .|.++....
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-NGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-CCCcEEEEe
Confidence 55699999986 799995 77777665 466654443
No 494
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=23.97 E-value=96 Score=26.80 Aligned_cols=28 Identities=36% Similarity=0.700 Sum_probs=21.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH--HHhcC
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQM--LNHLG 69 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~i--L~~~g 69 (331)
+..++.+||.| ||||...++..+ |.+.|
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g 60 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIG 60 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhC
Confidence 55799999986 899988887754 44455
No 495
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=23.89 E-value=65 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+..++++.|-| ||||...+|.-++..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 52 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV 52 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467899999987 799999998877653
No 496
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=23.79 E-value=2.6e+02 Score=20.72 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=12.2
Q ss_pred CCcEEEEEcCCCCC
Q 020059 292 GHKCVILLGGQAKV 305 (331)
Q Consensus 292 ~~~~i~V~G~~~~~ 305 (331)
++.+++|.|+|.+.
T Consensus 68 ~~~~ivv~GC~aq~ 81 (98)
T PF00919_consen 68 PGAKIVVTGCMAQR 81 (98)
T ss_pred CCCEEEEEeCcccc
Confidence 56889999999987
No 497
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=23.77 E-value=51 Score=25.06 Aligned_cols=21 Identities=19% Similarity=0.177 Sum_probs=15.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVG 62 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~ 62 (331)
....+++.|.+ ||||+..++.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 44567777664 7999998864
No 498
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=23.73 E-value=96 Score=28.49 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=20.7
Q ss_pred CCcEEEEeC--CCChHhHHHHHHH-HHHhcCCCe
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQ-MLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~-iL~~~g~~~ 72 (331)
..|.+.|-| +|||||.+.-|-+ .|+. |+++
T Consensus 98 ~gp~v~vvGgsq~Gkts~~~tL~syalk~-~~~p 130 (424)
T COG5623 98 KGPTVMVVGGSQNGKTSFCFTLISYALKL-GKKP 130 (424)
T ss_pred cCCEEEEECCCcCCceeHHHHHHHHHHHh-cCCc
Confidence 466666666 6999999876654 5555 6664
No 499
>PRK08338 2-oxoglutarate ferredoxin oxidoreductase subunit gamma; Validated
Probab=23.69 E-value=4.1e+02 Score=21.71 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=77.7
Q ss_pred EEEeCCCChH--hHHHHHHHHHHhcCCCeeecccCcccchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEE
Q 020059 46 LAVTGTNGKS--TVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVS 123 (331)
Q Consensus 46 I~VtGT~GKT--Tt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~ 123 (331)
|-++|.-|-+ |+..+|+..+...|+.+...-++|... ....-++-+=+|........ .-.||+.
T Consensus 3 i~i~G~gGqGv~tag~ila~aa~~~G~~v~~~~~ygs~~-------------RGG~~~~~vris~~~i~s~~-~~~~D~l 68 (170)
T PRK08338 3 IRFAGIGGQGVVLAGVILGEAAAIEGLNVLQTQDYSSAS-------------RGGHSIADVIISKEPIYDVM-VTKADVL 68 (170)
T ss_pred EEEEEECcHHHHHHHHHHHHHHHHcCCCEEEccccChhh-------------cCCeEEEEEEEcCccccCCC-CCCCCEE
Confidence 4456666655 566789999999999885544444221 22333344445544333221 2367888
Q ss_pred EEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCccEEEeccCCCcccccccccceEEEec
Q 020059 124 VVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPA 203 (331)
Q Consensus 124 viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (331)
|..+= +.+. .....+++++.+|+|.+... . ..+. ++ ++.
T Consensus 69 val~~-----------~~~~----~~~~~l~~~g~vi~n~~~~~-~------~~~~--~~-----------------vp~ 107 (170)
T PRK08338 69 VALHQ-----------LGYE----TAKSSLKEDGLLIIDTDLVK-P------DRDY--IG-----------------APF 107 (170)
T ss_pred EEcCH-----------HHHH----HHhcccCCCeEEEEeCCCcC-C------cceE--EE-----------------ecH
Confidence 76653 1222 23344668899998854210 0 0011 10 100
Q ss_pred CceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHhhcCC
Q 020059 204 VGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV-DVEALNSTIEILR 253 (331)
Q Consensus 204 ~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~-~~~~i~~~l~~~~ 253 (331)
.. +-....|.-...|..+.- +++..+|+ +.|.+.+++++.-
T Consensus 108 ~~-------ia~~~~g~~~~~N~v~lG--a~~~~~g~~~~e~~~~~i~~~~ 149 (170)
T PRK08338 108 TR-------IAEETTGLALTVNMVALG--YLVAKTGVVKKESVEEAIRRRV 149 (170)
T ss_pred HH-------HHHHhcCCHHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHc
Confidence 00 011223445566877555 56667895 9999999998643
No 500
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=23.61 E-value=69 Score=27.75 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=20.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-.+.
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999997 79998888887664
Done!