Query 020059
Match_columns 331
No_of_seqs 244 out of 1267
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:09:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020059.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020059hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lk7_A UDP-N-acetylmuramoylala 100.0 5.5E-60 1.9E-64 453.4 34.3 304 2-329 73-377 (451)
2 2x5o_A UDP-N-acetylmuramoylala 100.0 4.6E-56 1.6E-60 424.9 32.3 299 2-329 65-368 (439)
3 3hn7_A UDP-N-acetylmuramate-L- 100.0 1.1E-54 3.6E-59 423.3 32.9 295 2-302 81-423 (524)
4 4hv4_A UDP-N-acetylmuramate--L 100.0 1.4E-54 4.9E-59 419.7 28.9 307 2-329 82-409 (494)
5 1gg4_A UDP-N-acetylmuramoylala 100.0 1.6E-53 5.5E-58 408.7 22.3 308 4-329 64-389 (452)
6 2am1_A SP protein, UDP-N-acety 100.0 7E-54 2.4E-58 411.6 19.6 303 4-329 65-385 (454)
7 2f00_A UDP-N-acetylmuramate--L 100.0 6E-52 2.1E-56 401.6 31.4 306 3-329 80-406 (491)
8 1p3d_A UDP-N-acetylmuramate--a 100.0 3.1E-52 1E-56 402.3 29.1 307 3-329 79-400 (475)
9 1j6u_A UDP-N-acetylmuramate-al 100.0 5.4E-50 1.8E-54 385.6 28.9 294 2-329 72-384 (469)
10 1e8c_A UDP-N-acetylmuramoylala 100.0 1.3E-48 4.4E-53 378.9 25.8 267 42-321 107-400 (498)
11 3eag_A UDP-N-acetylmuramate:L- 100.0 5.7E-48 2E-52 355.2 26.0 247 2-256 67-325 (326)
12 2wtz_A UDP-N-acetylmuramoyl-L- 100.0 4.5E-48 1.5E-52 377.7 25.7 256 42-305 145-424 (535)
13 2vos_A Folylpolyglutamate synt 100.0 6E-46 2.1E-50 358.4 25.4 284 26-328 44-402 (487)
14 1jbw_A Folylpolyglutamate synt 100.0 1.1E-45 3.9E-50 352.1 23.2 281 29-329 22-364 (428)
15 1o5z_A Folylpolyglutamate synt 100.0 2.8E-44 9.5E-49 343.4 26.9 278 29-328 35-372 (442)
16 3nrs_A Dihydrofolate:folylpoly 100.0 1.1E-44 3.8E-49 345.6 23.4 278 28-328 34-374 (437)
17 1w78_A FOLC bifunctional prote 100.0 2.7E-43 9.1E-48 335.2 21.3 262 41-329 47-354 (422)
18 3mvn_A UDP-N-acetylmuramate:L- 99.1 6.3E-11 2.2E-15 97.3 7.1 83 242-329 11-98 (163)
19 1pjq_A CYSG, siroheme synthase 96.2 0.0012 4E-08 62.7 1.4 65 3-68 74-146 (457)
20 3fwy_A Light-independent proto 94.4 0.04 1.4E-06 49.4 5.0 35 41-75 46-82 (314)
21 3fgn_A Dethiobiotin synthetase 93.4 0.082 2.8E-06 45.7 4.9 40 36-75 19-61 (251)
22 4dzz_A Plasmid partitioning pr 92.9 0.1 3.6E-06 42.9 4.7 33 43-75 1-36 (206)
23 1xjc_A MOBB protein homolog; s 92.9 0.13 4.4E-06 41.6 5.0 35 42-76 3-39 (169)
24 3of5_A Dethiobiotin synthetase 92.8 0.11 3.9E-06 44.1 4.8 35 41-75 2-39 (228)
25 1byi_A Dethiobiotin synthase; 92.0 0.14 4.6E-06 42.9 4.3 31 44-74 2-35 (224)
26 3cio_A ETK, tyrosine-protein k 91.4 0.49 1.7E-05 41.8 7.5 35 41-75 102-139 (299)
27 3la6_A Tyrosine-protein kinase 91.3 0.31 1.1E-05 42.9 5.9 35 41-75 90-127 (286)
28 3ea0_A ATPase, para family; al 90.9 0.23 7.8E-06 42.0 4.6 34 41-74 2-39 (245)
29 3bfv_A CAPA1, CAPB2, membrane 90.9 0.4 1.4E-05 41.7 6.3 35 41-75 80-117 (271)
30 1wcv_1 SOJ, segregation protei 90.6 0.22 7.6E-06 42.8 4.3 35 41-75 4-41 (257)
31 2ph1_A Nucleotide-binding prot 90.6 0.46 1.6E-05 40.9 6.3 42 33-75 9-53 (262)
32 1g3q_A MIND ATPase, cell divis 90.5 0.28 9.6E-06 41.3 4.8 32 44-75 3-37 (237)
33 3qxc_A Dethiobiotin synthetase 90.3 0.3 1E-05 41.9 4.8 35 41-75 19-56 (242)
34 1kyq_A Met8P, siroheme biosynt 90.0 0.057 1.9E-06 47.3 -0.1 65 2-67 107-183 (274)
35 3end_A Light-independent proto 89.7 0.36 1.2E-05 42.6 5.0 34 41-74 39-74 (307)
36 3q9l_A Septum site-determining 89.3 0.4 1.4E-05 40.9 4.9 31 44-74 3-36 (260)
37 1zu4_A FTSY; GTPase, signal re 89.3 0.42 1.4E-05 42.8 5.1 35 42-76 104-140 (320)
38 1cp2_A CP2, nitrogenase iron p 89.3 0.38 1.3E-05 41.4 4.8 31 44-74 2-34 (269)
39 2afh_E Nitrogenase iron protei 89.2 0.42 1.5E-05 41.7 5.0 32 43-74 2-35 (289)
40 2xj4_A MIPZ; replication, cell 88.9 0.42 1.4E-05 41.8 4.8 31 44-74 5-38 (286)
41 3k9g_A PF-32 protein; ssgcid, 88.8 0.38 1.3E-05 41.4 4.4 33 41-74 25-60 (267)
42 1vma_A Cell division protein F 88.5 0.52 1.8E-05 41.9 5.1 35 42-76 103-139 (306)
43 1rz3_A Hypothetical protein rb 87.6 0.9 3.1E-05 37.3 5.8 34 41-74 20-55 (201)
44 1hyq_A MIND, cell division inh 87.3 0.64 2.2E-05 39.8 4.9 31 44-74 3-36 (263)
45 3cwq_A Para family chromosome 86.7 0.66 2.3E-05 38.5 4.5 29 45-74 2-33 (209)
46 3fkq_A NTRC-like two-domain pr 86.6 0.65 2.2E-05 42.4 4.7 36 41-76 141-179 (373)
47 2oze_A ORF delta'; para, walke 86.3 0.33 1.1E-05 42.6 2.5 26 49-74 45-70 (298)
48 3pg5_A Uncharacterized protein 85.5 0.45 1.5E-05 43.3 3.0 32 43-74 1-35 (361)
49 2px0_A Flagellar biosynthesis 84.8 0.97 3.3E-05 39.9 4.8 35 42-76 104-141 (296)
50 3ug7_A Arsenical pump-driving 84.7 1.1 3.6E-05 40.6 5.1 37 41-77 23-62 (349)
51 2obn_A Hypothetical protein; s 84.7 0.94 3.2E-05 40.9 4.7 108 42-149 151-289 (349)
52 3c8u_A Fructokinase; YP_612366 84.2 1.5 5E-05 36.2 5.4 32 41-72 20-53 (208)
53 1np6_A Molybdopterin-guanine d 83.8 1.5 5E-05 35.4 5.1 33 42-74 5-39 (174)
54 3kl4_A SRP54, signal recogniti 83.7 1.1 3.7E-05 41.8 4.8 35 42-76 96-132 (433)
55 1a7j_A Phosphoribulokinase; tr 83.1 0.95 3.3E-05 39.8 4.0 30 42-71 4-35 (290)
56 2g0t_A Conserved hypothetical 83.0 1.2 4.1E-05 40.3 4.7 107 42-149 168-310 (350)
57 3b9q_A Chloroplast SRP recepto 82.6 1.5 5.2E-05 38.7 5.2 35 42-76 99-135 (302)
58 3zq6_A Putative arsenical pump 82.3 1.3 4.5E-05 39.5 4.7 34 44-77 14-50 (324)
59 3ez9_A Para; DNA binding, wing 82.3 0.82 2.8E-05 42.1 3.4 34 41-74 109-151 (403)
60 3ez2_A Plasmid partition prote 82.0 1.4 5E-05 40.3 5.0 34 41-74 106-148 (398)
61 2woo_A ATPase GET3; tail-ancho 81.4 1.4 4.6E-05 39.5 4.4 33 44-76 19-54 (329)
62 2z0h_A DTMP kinase, thymidylat 81.1 1.5 5.2E-05 35.3 4.3 29 45-73 2-32 (197)
63 2f1r_A Molybdopterin-guanine d 80.9 1.4 4.6E-05 35.5 3.8 32 43-74 2-35 (171)
64 2pez_A Bifunctional 3'-phospho 80.6 2 6.7E-05 34.3 4.7 31 42-72 4-36 (179)
65 3e70_C DPA, signal recognition 80.3 2 6.9E-05 38.4 5.1 35 42-76 128-164 (328)
66 2og2_A Putative signal recogni 79.8 2.1 7.1E-05 38.9 5.1 35 42-76 156-192 (359)
67 3dm5_A SRP54, signal recogniti 79.8 1.9 6.4E-05 40.4 4.8 34 43-76 100-135 (443)
68 1nn5_A Similar to deoxythymidy 79.6 1.9 6.5E-05 35.3 4.5 31 42-72 8-40 (215)
69 1nks_A Adenylate kinase; therm 78.9 1.8 6.2E-05 34.6 4.1 29 44-72 2-32 (194)
70 2jeo_A Uridine-cytidine kinase 78.3 1.7 5.9E-05 36.8 3.9 25 41-65 23-49 (245)
71 2vo1_A CTP synthase 1; pyrimid 78.0 2.6 9E-05 36.4 4.8 34 41-74 21-58 (295)
72 2pbr_A DTMP kinase, thymidylat 77.8 2.3 7.9E-05 34.0 4.4 29 45-73 2-32 (195)
73 3uie_A Adenylyl-sulfate kinase 77.6 3.7 0.00013 33.3 5.7 31 41-71 23-55 (200)
74 3asz_A Uridine kinase; cytidin 77.5 1.6 5.5E-05 35.8 3.4 25 42-66 5-31 (211)
75 2yhs_A FTSY, cell division pro 77.5 2.7 9.3E-05 39.9 5.2 34 42-75 292-327 (503)
76 2wwf_A Thymidilate kinase, put 77.0 2.3 7.8E-05 34.7 4.2 31 42-72 9-41 (212)
77 1rj9_A FTSY, signal recognitio 76.4 3.1 0.0001 36.8 5.0 35 42-76 101-137 (304)
78 2woj_A ATPase GET3; tail-ancho 75.4 2.5 8.4E-05 38.3 4.2 34 43-76 17-55 (354)
79 1zuh_A Shikimate kinase; alpha 75.1 2.3 7.9E-05 33.4 3.6 26 41-66 5-32 (168)
80 1odf_A YGR205W, hypothetical 3 74.8 2.8 9.6E-05 36.7 4.3 29 41-69 29-59 (290)
81 3iqw_A Tail-anchored protein t 74.3 2.7 9.4E-05 37.6 4.2 34 44-77 17-52 (334)
82 2yvu_A Probable adenylyl-sulfa 74.1 3.9 0.00013 32.7 4.8 31 42-72 12-44 (186)
83 1ls1_A Signal recognition part 73.8 3.8 0.00013 35.9 4.9 35 42-76 97-133 (295)
84 3kjh_A CO dehydrogenase/acetyl 73.6 1.3 4.5E-05 37.1 1.9 29 46-74 3-33 (254)
85 2i3b_A HCR-ntpase, human cance 73.5 2.6 8.8E-05 34.4 3.5 25 45-69 3-29 (189)
86 2xxa_A Signal recognition part 73.2 3.8 0.00013 38.1 5.0 33 42-74 99-134 (433)
87 3aez_A Pantothenate kinase; tr 73.2 3 0.0001 37.0 4.1 28 41-68 88-117 (312)
88 2if2_A Dephospho-COA kinase; a 72.9 1.9 6.6E-05 35.1 2.7 20 44-63 2-23 (204)
89 3tqc_A Pantothenate kinase; bi 72.0 4.9 0.00017 35.8 5.3 26 42-67 91-118 (321)
90 3tr0_A Guanylate kinase, GMP k 71.5 2.8 9.5E-05 34.0 3.3 24 42-65 6-31 (205)
91 1sq5_A Pantothenate kinase; P- 70.6 2.9 9.9E-05 36.9 3.4 26 41-66 78-105 (308)
92 2grj_A Dephospho-COA kinase; T 70.3 3.2 0.00011 33.9 3.4 28 42-72 11-40 (192)
93 2p67_A LAO/AO transport system 70.3 4.5 0.00016 36.2 4.7 34 41-74 54-89 (341)
94 3io3_A DEHA2D07832P; chaperone 70.2 5 0.00017 36.2 5.0 36 42-77 17-56 (348)
95 1j8m_F SRP54, signal recogniti 69.9 4.5 0.00015 35.6 4.5 34 43-76 98-133 (297)
96 1uj2_A Uridine-cytidine kinase 69.7 3 0.0001 35.4 3.3 25 42-66 21-47 (252)
97 3kb2_A SPBC2 prophage-derived 68.9 3.8 0.00013 32.0 3.5 23 44-66 2-26 (173)
98 1jjv_A Dephospho-COA kinase; P 68.8 3.1 0.00011 33.8 3.1 25 44-72 3-29 (206)
99 3ake_A Cytidylate kinase; CMP 68.4 3.8 0.00013 33.2 3.5 23 44-66 3-27 (208)
100 2c5m_A CTP synthase; cytidine 67.9 6.1 0.00021 33.9 4.6 34 41-74 21-58 (294)
101 1cke_A CK, MSSA, protein (cyti 67.5 4.7 0.00016 33.2 4.0 23 43-65 5-29 (227)
102 4eun_A Thermoresistant glucoki 67.4 4.7 0.00016 32.7 3.9 24 42-65 28-53 (200)
103 2qm8_A GTPase/ATPase; G protei 66.8 6.9 0.00024 34.9 5.2 36 41-76 53-90 (337)
104 1m7g_A Adenylylsulfate kinase; 66.3 9.3 0.00032 31.2 5.6 32 41-72 23-57 (211)
105 2ffh_A Protein (FFH); SRP54, s 65.4 6.6 0.00023 36.4 4.8 34 43-76 98-133 (425)
106 1ye8_A Protein THEP1, hypothet 65.4 5 0.00017 32.2 3.6 22 45-66 2-25 (178)
107 3pzx_A Formate--tetrahydrofola 65.2 7 0.00024 36.9 4.8 60 15-74 17-94 (557)
108 3lnc_A Guanylate kinase, GMP k 64.7 3.6 0.00012 34.3 2.7 25 42-66 26-53 (231)
109 3a00_A Guanylate kinase, GMP k 64.0 3.4 0.00012 33.2 2.3 24 44-67 2-27 (186)
110 1xx6_A Thymidine kinase; NESG, 64.0 9.8 0.00033 31.0 5.1 34 42-75 7-42 (191)
111 3p32_A Probable GTPase RV1496/ 63.8 7.8 0.00027 34.8 4.9 34 41-74 77-112 (355)
112 4i1u_A Dephospho-COA kinase; s 63.8 5.5 0.00019 33.1 3.6 28 41-72 7-36 (210)
113 2j37_W Signal recognition part 63.5 7.5 0.00026 36.9 4.9 34 42-75 100-135 (504)
114 1yrb_A ATP(GTP)binding protein 63.1 8.4 0.00029 32.4 4.8 33 42-75 13-47 (262)
115 1ihu_A Arsenical pump-driving 63.0 8.8 0.0003 37.1 5.4 33 42-74 7-41 (589)
116 3ec2_A DNA replication protein 62.8 21 0.00073 27.9 7.0 31 42-72 37-70 (180)
117 2j41_A Guanylate kinase; GMP, 62.7 4.2 0.00014 32.9 2.7 24 42-65 5-30 (207)
118 1kag_A SKI, shikimate kinase I 62.7 4.2 0.00014 31.9 2.6 23 44-66 5-29 (173)
119 1uf9_A TT1252 protein; P-loop, 62.7 5.2 0.00018 32.2 3.2 28 41-72 6-35 (203)
120 1kht_A Adenylate kinase; phosp 62.6 7.4 0.00025 30.8 4.2 27 44-70 4-32 (192)
121 2plr_A DTMP kinase, probable t 62.5 7.1 0.00024 31.5 4.1 27 43-69 4-32 (213)
122 1e6c_A Shikimate kinase; phosp 62.4 5.2 0.00018 31.2 3.2 23 44-66 3-27 (173)
123 2eyu_A Twitching motility prot 61.4 8 0.00027 33.1 4.4 28 41-68 23-52 (261)
124 3a4m_A L-seryl-tRNA(SEC) kinas 60.3 9.7 0.00033 32.4 4.7 32 42-73 3-36 (260)
125 3igf_A ALL4481 protein; two-do 59.9 5.1 0.00017 36.5 2.9 28 50-77 11-38 (374)
126 2w0m_A SSO2452; RECA, SSPF, un 59.7 11 0.00036 30.8 4.7 35 42-76 22-58 (235)
127 3hjn_A DTMP kinase, thymidylat 59.7 6.6 0.00023 32.1 3.4 23 52-74 11-33 (197)
128 2pt5_A Shikimate kinase, SK; a 58.3 7.9 0.00027 30.0 3.5 22 45-66 2-25 (168)
129 3tau_A Guanylate kinase, GMP k 58.1 8.1 0.00028 31.6 3.7 26 41-66 6-33 (208)
130 4edh_A DTMP kinase, thymidylat 57.7 12 0.00039 31.0 4.6 31 43-73 6-38 (213)
131 4tmk_A Protein (thymidylate ki 57.6 11 0.00037 31.2 4.4 28 43-70 3-32 (213)
132 4ehx_A Tetraacyldisaccharide 4 57.5 6.6 0.00023 34.8 3.2 28 42-69 35-66 (315)
133 1y63_A LMAJ004144AAA protein; 57.1 8.3 0.00028 30.7 3.5 23 42-64 9-33 (184)
134 2www_A Methylmalonic aciduria 57.1 14 0.00046 33.2 5.3 35 42-76 73-109 (349)
135 1q3t_A Cytidylate kinase; nucl 56.6 9.6 0.00033 31.8 4.0 25 41-65 14-40 (236)
136 2qt1_A Nicotinamide riboside k 56.5 7.1 0.00024 31.7 3.0 25 41-65 19-45 (207)
137 2iyv_A Shikimate kinase, SK; t 56.2 6.9 0.00023 31.0 2.8 22 44-65 3-26 (184)
138 3vaa_A Shikimate kinase, SK; s 55.6 10 0.00035 30.6 3.9 24 42-65 24-49 (199)
139 1qf9_A UMP/CMP kinase, protein 55.6 8.1 0.00028 30.6 3.2 23 43-65 6-30 (194)
140 3t61_A Gluconokinase; PSI-biol 55.0 8.6 0.0003 31.0 3.3 24 42-65 17-42 (202)
141 1knq_A Gluconate kinase; ALFA/ 54.9 11 0.00036 29.6 3.8 24 42-65 7-32 (175)
142 1znw_A Guanylate kinase, GMP k 54.2 8.4 0.00029 31.4 3.1 26 41-66 18-45 (207)
143 2c95_A Adenylate kinase 1; tra 54.1 9.9 0.00034 30.2 3.5 24 42-65 8-33 (196)
144 4eaq_A DTMP kinase, thymidylat 53.8 11 0.00038 31.4 3.9 31 42-73 25-57 (229)
145 1vht_A Dephospho-COA kinase; s 53.7 10 0.00035 31.0 3.6 21 43-63 4-26 (218)
146 2b8t_A Thymidine kinase; deoxy 53.1 18 0.0006 30.2 5.0 33 42-74 11-45 (223)
147 2v3c_C SRP54, signal recogniti 53.0 8.4 0.00029 35.8 3.2 32 44-75 100-133 (432)
148 1lvg_A Guanylate kinase, GMP k 52.8 8.8 0.0003 31.1 3.0 24 43-66 4-29 (198)
149 1ko7_A HPR kinase/phosphatase; 52.5 14 0.00049 32.6 4.5 58 4-61 83-164 (314)
150 2f6r_A COA synthase, bifunctio 52.2 9.1 0.00031 33.1 3.2 22 42-63 74-97 (281)
151 3ld9_A DTMP kinase, thymidylat 51.8 13 0.00046 31.0 4.0 34 41-74 19-55 (223)
152 4e22_A Cytidylate kinase; P-lo 51.3 11 0.00037 32.0 3.4 25 41-65 25-51 (252)
153 3nva_A CTP synthase; rossman f 51.2 18 0.00061 34.4 5.1 32 43-74 3-38 (535)
154 1kgd_A CASK, peripheral plasma 51.0 11 0.00037 29.9 3.3 25 42-66 4-30 (180)
155 3do6_A Formate--tetrahydrofola 50.5 18 0.0006 34.0 4.8 33 41-73 41-79 (543)
156 1zak_A Adenylate kinase; ATP:A 50.3 7.6 0.00026 31.9 2.3 22 45-67 10-31 (222)
157 3jvv_A Twitching mobility prot 50.1 16 0.00053 33.0 4.4 31 42-72 122-155 (356)
158 2vli_A Antibiotic resistance p 50.0 8 0.00027 30.5 2.3 24 42-65 4-29 (183)
159 3lv8_A DTMP kinase, thymidylat 49.9 19 0.00064 30.3 4.7 30 42-71 26-57 (236)
160 1cr0_A DNA primase/helicase; R 49.9 19 0.00063 31.1 4.8 35 41-75 33-70 (296)
161 1p9r_A General secretion pathw 48.7 18 0.00063 33.3 4.8 29 41-69 165-195 (418)
162 2v54_A DTMP kinase, thymidylat 48.2 15 0.0005 29.4 3.7 24 42-65 3-28 (204)
163 1gtv_A TMK, thymidylate kinase 48.1 5.7 0.0002 32.3 1.1 28 45-72 2-31 (214)
164 2orw_A Thymidine kinase; TMTK, 47.9 19 0.00066 28.8 4.3 31 43-73 3-35 (184)
165 2ewv_A Twitching motility prot 47.7 17 0.00057 32.9 4.3 28 41-68 134-163 (372)
166 2kjq_A DNAA-related protein; s 47.2 23 0.00078 27.2 4.5 31 42-72 35-67 (149)
167 2r8r_A Sensor protein; KDPD, P 47.1 16 0.00055 30.7 3.7 25 49-73 14-38 (228)
168 1zp6_A Hypothetical protein AT 46.9 13 0.00043 29.5 3.0 23 42-64 8-32 (191)
169 3v9p_A DTMP kinase, thymidylat 46.8 19 0.00066 30.1 4.2 32 42-73 24-61 (227)
170 2cdn_A Adenylate kinase; phosp 46.8 19 0.00064 28.9 4.1 24 42-65 19-44 (201)
171 4a0g_A Adenosylmethionine-8-am 46.6 14 0.00049 37.3 4.0 33 42-74 33-73 (831)
172 2jaq_A Deoxyguanosine kinase; 46.5 16 0.00053 29.2 3.6 22 45-66 2-25 (205)
173 3lw7_A Adenylate kinase relate 46.1 16 0.00054 28.1 3.5 26 44-73 2-29 (179)
174 1htw_A HI0065; nucleotide-bind 45.2 20 0.00067 28.0 3.8 25 41-65 31-57 (158)
175 2bdt_A BH3686; alpha-beta prot 45.2 14 0.00049 29.2 3.1 20 44-63 3-24 (189)
176 1tev_A UMP-CMP kinase; ploop, 45.0 18 0.00061 28.5 3.7 23 43-65 3-27 (196)
177 1ukz_A Uridylate kinase; trans 44.8 15 0.00053 29.4 3.3 25 41-65 13-39 (203)
178 2j9r_A Thymidine kinase; TK1, 44.8 30 0.001 28.6 5.1 35 41-75 26-62 (214)
179 1qhx_A CPT, protein (chloramph 44.1 14 0.00048 28.8 2.9 23 44-66 4-28 (178)
180 1dek_A Deoxynucleoside monopho 44.0 16 0.00055 30.9 3.3 21 44-64 2-24 (241)
181 3trf_A Shikimate kinase, SK; a 43.5 20 0.00067 28.2 3.7 23 43-65 5-29 (185)
182 1x6v_B Bifunctional 3'-phospho 43.2 25 0.00085 34.3 4.9 32 42-73 51-84 (630)
183 2gks_A Bifunctional SAT/APS ki 43.1 22 0.00075 34.0 4.5 31 42-72 371-403 (546)
184 2bbw_A Adenylate kinase 4, AK4 43.0 20 0.0007 29.8 3.9 24 42-65 26-51 (246)
185 3cm0_A Adenylate kinase; ATP-b 42.8 18 0.0006 28.5 3.3 23 43-65 4-28 (186)
186 2bwj_A Adenylate kinase 5; pho 42.3 18 0.00062 28.7 3.3 24 43-66 12-37 (199)
187 3kta_A Chromosome segregation 41.7 15 0.0005 28.9 2.6 24 44-67 27-52 (182)
188 2rhm_A Putative kinase; P-loop 41.5 20 0.00069 28.2 3.5 24 42-65 4-29 (193)
189 3iij_A Coilin-interacting nucl 41.5 20 0.00067 28.1 3.4 24 42-65 10-35 (180)
190 1via_A Shikimate kinase; struc 41.4 17 0.00058 28.4 3.0 22 44-65 5-28 (175)
191 1aky_A Adenylate kinase; ATP:A 40.9 23 0.0008 28.8 3.9 25 42-66 3-29 (220)
192 1nij_A Hypothetical protein YJ 40.9 14 0.00047 32.6 2.5 29 42-72 3-33 (318)
193 3lfu_A DNA helicase II; SF1 he 39.7 16 0.00055 35.3 3.1 28 42-70 24-52 (647)
194 3hdt_A Putative kinase; struct 39.0 23 0.0008 29.4 3.5 24 42-65 13-38 (223)
195 1s1m_A CTP synthase; CTP synth 37.8 33 0.0011 32.8 4.7 31 44-74 4-38 (545)
196 1m8p_A Sulfate adenylyltransfe 37.8 29 0.00098 33.4 4.4 31 42-72 395-428 (573)
197 1vco_A CTP synthetase; tetrame 37.5 33 0.0011 32.8 4.7 31 44-74 13-47 (550)
198 1z6g_A Guanylate kinase; struc 36.8 18 0.00063 29.7 2.6 24 42-65 22-47 (218)
199 2wsm_A Hydrogenase expression/ 36.7 33 0.0011 27.7 4.1 31 42-73 29-61 (221)
200 3nwj_A ATSK2; P loop, shikimat 36.4 23 0.0008 30.0 3.2 24 43-66 48-73 (250)
201 1s96_A Guanylate kinase, GMP k 35.9 24 0.00083 29.1 3.2 26 41-66 14-41 (219)
202 2v9p_A Replication protein E1; 33.7 38 0.0013 29.7 4.1 25 41-65 124-150 (305)
203 2olj_A Amino acid ABC transpor 33.6 29 0.00098 29.7 3.3 26 41-66 48-75 (263)
204 3r20_A Cytidylate kinase; stru 33.3 35 0.0012 28.6 3.7 25 42-66 8-34 (233)
205 3upu_A ATP-dependent DNA helic 33.1 21 0.00071 33.2 2.5 26 45-70 47-74 (459)
206 2ehv_A Hypothetical protein PH 32.9 51 0.0017 27.0 4.8 22 42-63 29-52 (251)
207 2h92_A Cytidylate kinase; ross 32.6 24 0.00082 28.6 2.6 22 44-65 4-27 (219)
208 3out_A Glutamate racemase; str 32.4 93 0.0032 26.5 6.4 46 25-72 94-139 (268)
209 1ak2_A Adenylate kinase isoenz 31.6 42 0.0014 27.6 4.0 25 42-66 15-41 (233)
210 3be4_A Adenylate kinase; malar 31.5 31 0.0011 28.0 3.1 22 44-65 6-29 (217)
211 1mv5_A LMRA, multidrug resista 31.5 19 0.00064 30.3 1.7 26 41-66 26-53 (243)
212 1g8f_A Sulfate adenylyltransfe 31.3 32 0.0011 32.6 3.5 26 42-67 394-421 (511)
213 2zu0_C Probable ATP-dependent 31.3 35 0.0012 29.1 3.5 25 41-65 44-70 (267)
214 1b0u_A Histidine permease; ABC 31.2 33 0.0011 29.2 3.3 26 41-66 30-57 (262)
215 3fb4_A Adenylate kinase; psych 30.8 37 0.0013 27.3 3.5 21 45-65 2-24 (216)
216 2onk_A Molybdate/tungstate ABC 30.6 35 0.0012 28.6 3.3 25 41-66 23-49 (240)
217 2yz2_A Putative ABC transporte 30.3 30 0.001 29.5 2.9 26 41-66 31-58 (266)
218 3euj_A Chromosome partition pr 30.3 39 0.0013 31.7 3.9 26 42-68 29-56 (483)
219 3b85_A Phosphate starvation-in 30.3 35 0.0012 27.9 3.2 25 42-67 21-47 (208)
220 2pcj_A ABC transporter, lipopr 29.8 27 0.00091 28.9 2.4 25 42-66 29-55 (224)
221 1vpl_A ABC transporter, ATP-bi 29.6 32 0.0011 29.2 3.0 26 41-66 39-66 (256)
222 2yv5_A YJEQ protein; hydrolase 29.5 51 0.0018 28.6 4.3 42 22-66 139-189 (302)
223 1ly1_A Polynucleotide kinase; 29.3 38 0.0013 26.1 3.2 20 44-63 3-24 (181)
224 4hlc_A DTMP kinase, thymidylat 28.7 29 0.001 28.3 2.4 29 44-73 3-33 (205)
225 2d2e_A SUFC protein; ABC-ATPas 28.6 39 0.0013 28.5 3.3 24 41-64 27-52 (250)
226 2w58_A DNAI, primosome compone 28.5 60 0.002 25.7 4.3 29 44-72 55-85 (202)
227 4g1u_C Hemin import ATP-bindin 28.5 19 0.00066 30.8 1.3 27 41-67 35-63 (266)
228 2ze6_A Isopentenyl transferase 28.2 46 0.0016 28.0 3.7 22 44-65 2-25 (253)
229 1g6h_A High-affinity branched- 27.7 30 0.001 29.3 2.4 26 41-66 31-58 (257)
230 1ji0_A ABC transporter; ATP bi 27.5 35 0.0012 28.6 2.7 26 41-66 30-57 (240)
231 2nq2_C Hypothetical ABC transp 27.4 35 0.0012 28.9 2.8 25 42-66 30-56 (253)
232 2ixe_A Antigen peptide transpo 27.4 41 0.0014 28.8 3.2 26 41-66 43-70 (271)
233 3tlx_A Adenylate kinase 2; str 27.4 53 0.0018 27.3 3.9 24 42-65 28-53 (243)
234 4ag6_A VIRB4 ATPase, type IV s 26.9 37 0.0013 30.6 3.0 32 42-74 37-68 (392)
235 3dfz_A SIRC, precorrin-2 dehyd 26.7 26 0.0009 29.2 1.8 64 3-68 93-164 (223)
236 3s81_A Putative aspartate race 26.7 47 0.0016 28.4 3.5 48 24-72 121-168 (268)
237 2cbz_A Multidrug resistance-as 26.6 44 0.0015 27.8 3.2 25 41-65 29-55 (237)
238 2vp4_A Deoxynucleoside kinase; 26.6 28 0.00094 28.8 1.9 24 41-64 18-43 (230)
239 2oap_1 GSPE-2, type II secreti 26.2 36 0.0012 32.3 2.8 26 42-67 259-286 (511)
240 2ghi_A Transport protein; mult 26.2 45 0.0015 28.3 3.2 26 41-66 44-71 (260)
241 2ihy_A ABC transporter, ATP-bi 26.0 38 0.0013 29.1 2.8 26 41-66 45-72 (279)
242 2pjz_A Hypothetical protein ST 25.9 39 0.0013 28.8 2.8 23 43-65 30-54 (263)
243 3e1s_A Exodeoxyribonuclease V, 25.5 1E+02 0.0035 29.5 6.0 34 42-75 203-238 (574)
244 1ihu_A Arsenical pump-driving 25.4 47 0.0016 31.8 3.6 32 44-75 327-361 (589)
245 3fdi_A Uncharacterized protein 25.4 42 0.0014 27.2 2.8 27 43-72 6-34 (201)
246 1lw7_A Transcriptional regulat 25.3 41 0.0014 30.0 3.0 24 43-66 170-195 (365)
247 1zd8_A GTP:AMP phosphotransfer 25.2 39 0.0013 27.6 2.6 23 43-65 7-31 (227)
248 2dr3_A UPF0273 protein PH0284; 25.1 85 0.0029 25.5 4.8 34 42-76 22-58 (247)
249 2npi_A Protein CLP1; CLP1-PCF1 24.6 32 0.0011 32.1 2.1 28 41-68 136-165 (460)
250 1sgw_A Putative ABC transporte 24.6 40 0.0014 27.7 2.6 25 42-66 34-60 (214)
251 3d3q_A TRNA delta(2)-isopenten 24.5 44 0.0015 29.8 3.0 23 44-66 8-32 (340)
252 2qi9_C Vitamin B12 import ATP- 24.5 43 0.0015 28.2 2.8 26 41-66 24-51 (249)
253 3e2i_A Thymidine kinase; Zn-bi 24.4 91 0.0031 25.8 4.7 33 41-73 26-60 (219)
254 3qks_A DNA double-strand break 24.3 59 0.002 26.2 3.5 25 43-67 23-49 (203)
255 3dl0_A Adenylate kinase; phosp 24.2 51 0.0017 26.5 3.1 21 45-65 2-24 (216)
256 2rcn_A Probable GTPase ENGC; Y 24.1 1.2E+02 0.0041 27.1 5.8 38 42-83 192-229 (358)
257 2pze_A Cystic fibrosis transme 23.4 53 0.0018 27.1 3.1 24 42-65 33-58 (229)
258 2orv_A Thymidine kinase; TP4A 23.4 1.1E+02 0.0036 25.7 4.9 33 42-74 18-52 (234)
259 3tif_A Uncharacterized ABC tra 23.3 56 0.0019 27.2 3.2 26 41-66 29-56 (235)
260 1knx_A Probable HPR(Ser) kinas 23.2 37 0.0013 29.9 2.1 27 4-30 86-112 (312)
261 2bbs_A Cystic fibrosis transme 23.1 48 0.0016 28.7 2.9 25 41-65 62-88 (290)
262 3ney_A 55 kDa erythrocyte memb 23.0 65 0.0022 26.1 3.5 24 42-65 18-43 (197)
263 2it1_A 362AA long hypothetical 22.7 59 0.002 29.2 3.5 26 41-66 27-54 (362)
264 4a74_A DNA repair and recombin 22.6 49 0.0017 26.6 2.8 25 42-66 24-50 (231)
265 3thx_B DNA mismatch repair pro 22.5 30 0.001 35.4 1.6 48 13-64 646-696 (918)
266 1f2t_A RAD50 ABC-ATPase; DNA d 22.5 72 0.0025 24.2 3.5 24 43-66 23-48 (149)
267 3cr8_A Sulfate adenylyltranfer 22.4 58 0.002 31.1 3.5 28 42-69 368-397 (552)
268 2ff7_A Alpha-hemolysin translo 22.3 56 0.0019 27.4 3.1 26 41-66 33-60 (247)
269 2zr9_A Protein RECA, recombina 22.2 96 0.0033 27.5 4.8 35 42-76 60-96 (349)
270 3gfo_A Cobalt import ATP-bindi 22.1 50 0.0017 28.3 2.8 26 41-66 32-59 (275)
271 2yyz_A Sugar ABC transporter, 22.0 62 0.0021 29.0 3.4 26 41-66 27-54 (359)
272 2xb4_A Adenylate kinase; ATP-b 21.8 68 0.0023 26.1 3.5 21 45-65 2-24 (223)
273 2qor_A Guanylate kinase; phosp 21.4 49 0.0017 26.5 2.5 25 42-66 11-37 (204)
274 1oxx_K GLCV, glucose, ABC tran 20.9 55 0.0019 29.3 2.8 26 41-66 29-56 (353)
275 2ocp_A DGK, deoxyguanosine kin 20.8 55 0.0019 27.0 2.7 23 44-66 3-27 (241)
276 1tue_A Replication protein E1; 20.6 90 0.0031 25.7 3.8 47 19-66 32-83 (212)
277 2gza_A Type IV secretion syste 20.5 46 0.0016 29.7 2.3 25 42-66 174-200 (361)
278 4gp7_A Metallophosphoesterase; 20.4 87 0.003 24.2 3.7 19 42-60 8-28 (171)
279 2p5t_B PEZT; postsegregational 20.3 62 0.0021 27.0 3.0 25 42-66 31-57 (253)
280 3d31_A Sulfate/molybdate ABC t 20.2 59 0.002 29.0 2.9 26 41-66 24-51 (348)
281 2hf9_A Probable hydrogenase ni 20.0 96 0.0033 24.8 4.0 27 42-68 37-65 (226)
No 1
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=100.00 E-value=5.5e-60 Score=453.38 Aligned_cols=304 Identities=23% Similarity=0.381 Sum_probs=256.7
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
+++||+||+++++||++++|+++|+|+++++++++++. +.++|+||||||||||++||+++|++.|+++.++||+|.|
T Consensus 73 ~d~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~--~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~ 150 (451)
T 3lk7_A 73 FCYMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVS--ESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP 150 (451)
T ss_dssp EEEEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHC--CSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred CCEEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence 57999999999999999999999999999999999987 4599999999999999999999999999999999999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLL 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~ 161 (331)
+..... ...+.|++|+|+|+++++.+.. ++|+++|||||++||+|+|||+|+|+++|.+|++.+++++.+|+
T Consensus 151 ~~~~~~-------~~~~~d~~VlE~~s~~l~~~~~-~~p~iaviTNI~~DHld~~gt~e~i~~aK~~i~~~~~~~~~~V~ 222 (451)
T 3lk7_A 151 ASEVVQ-------AANDKDTLVMELSSFQLMGVKE-FRPHIAVITNLMPTHLDYHGSFEDYVAAKWNIQNQMSSSDFLVL 222 (451)
T ss_dssp HHHHTT-------TCCTTCEEEEECCHHHHTTCSS-CCCSEEEECCCCSCCHHHHSSHHHHHHHHHGGGTTCCTTSEEEE
T ss_pred hhhhhh-------cCCCCCEEEEECCccccccccc-cCCCEEEEcCCChhHhhhcCCHHHHHHHHHHHHhcCCCCCEEEE
Confidence 875432 1246789999999998876543 89999999999999999999999999999999999888999999
Q ss_pred eCCChhhHHHHhccCccEEEeccCCCc-ccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCC
Q 020059 162 PFGNQHLNEAIKGHRFNLAWIGAFPGV-KIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGV 240 (331)
Q Consensus 162 n~dd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~ 240 (331)
|.|||....+......++++||.+... .... ....+.+. +. ..+....++++|.||++|+++|+ +++..+|+
T Consensus 223 n~dd~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~--~~-~~~~~~~l~l~G~hn~~NalaAi--a~a~~lgi 295 (451)
T 3lk7_A 223 NFNQGISKELAKTTKATIVPFSTTEKVDGAYV--QDKQLFYK--GE-NIMSVDDIGVPGSHNVENALATI--AVAKLAGI 295 (451)
T ss_dssp ETTSHHHHHHHTTCSSEEEEEESSSCCSSEEE--ETTEEEET--TE-EEEEGGGSSSCSHHHHHHHHHHH--HHHHHHTC
T ss_pred ECCcHHHHHHHhhcCCeEEEEccCCCcCCEEE--ECCEEEEC--Cc-EEeeccccCCCcHHHHHHHHHHH--HHHHHcCC
Confidence 999999988887777788888865322 0000 01122222 21 11234579999999999999999 89999999
Q ss_pred CHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCCCcEEEEEcCCCCCCCCccCCChhhhhhh
Q 020059 241 DVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKGHKCVILLGGQAKVLNGQESNGFEKLIEP 320 (331)
Q Consensus 241 ~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~~~~i~V~G~~~~~g~~~~~~~~~~l~~~ 320 (331)
+.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|+.++++.++.+|+++|+|++.+. .||+++++.
T Consensus 296 ~~~~i~~~L~~f~~~~gR~e~v~-~~~g~~vi~D~~a~np~a~~~al~~~~~~rii~I~g~~~r~------~d~~~l~~~ 368 (451)
T 3lk7_A 296 SNQVIRETLSNFGGVKHRLQSLG-KVHGISFYNDSKSTNILATQKALSGFDNTKVILIAGGLDRG------NEFDELIPD 368 (451)
T ss_dssp CHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHHTSCGGGEEEEECCSCCS------CCCGGGHHH
T ss_pred CHHHHHHHHHhCCCCCCcEEEEe-eeCCcEEEEeCCCCCHHHHHHHHHhCCCCCEEEEECCCCCC------CCHHHHHHH
Confidence 99999999999999999999996 46789999998899999999999999755689999877542 268889888
Q ss_pred hcceeEEEe
Q 020059 321 LNHHRCVIT 329 (331)
Q Consensus 321 l~~~~~~i~ 329 (331)
+.+.+.+|+
T Consensus 369 l~~~d~vi~ 377 (451)
T 3lk7_A 369 ITGLKHMVV 377 (451)
T ss_dssp HTTCSEEEE
T ss_pred HHhcCEEEE
Confidence 876666654
No 2
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=100.00 E-value=4.6e-56 Score=424.94 Aligned_cols=299 Identities=27% Similarity=0.394 Sum_probs=245.8
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNP 81 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~ 81 (331)
.++||+||+++++||++..|++++++++++++++++.+ +.++|+||||||||||++||+++|++.|++++++||+|.|
T Consensus 65 ~d~vV~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~--~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~ 142 (439)
T 2x5o_A 65 ADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREA--QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP 142 (439)
T ss_dssp CSEEEECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHC--CSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBC
T ss_pred CCEEEeCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHH
Confidence 36899999999999999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred chhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceEE
Q 020059 82 LSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLGL 160 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~v 160 (331)
++... ..+.|++|+|+|+++++.++. ++|+++|||||++||+|+| +|+|+|+++|.++++. ++.+|
T Consensus 143 ~~~~~---------~~~~d~~VlE~~~~~l~~~~~-~~p~vaviTNI~~DHld~~G~t~e~i~~~K~~i~~~---~~~~V 209 (439)
T 2x5o_A 143 ALMLL---------DDECELYVLELSSFQLETTSS-LQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYEN---AKVCV 209 (439)
T ss_dssp HHHHC---------CTTCCEEEEECCHHHHHTCCC-CCCSEEEECCCCSCCGGGCTTHHHHHHHHHHGGGTT---CSEEE
T ss_pred HHHHh---------CCCCCEEEEECCchhhccccc-CCCCEEEEeCCChhhcccccCCHHHHHHHHHHHHcC---CCEEE
Confidence 87542 123589999999998887654 7999999999999999999 7999999999999983 68999
Q ss_pred EeCCChhhHHHHhccCccEEEeccCCC-cc-cccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc
Q 020059 161 LPFGNQHLNEAIKGHRFNLAWIGAFPG-VK-IDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI 238 (331)
Q Consensus 161 ~n~dd~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l 238 (331)
+|.|||....+... ..++++||.... +. +... ...+.+. .+. ..+....++++|.||++|+++|+ +++..+
T Consensus 210 ~n~dd~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~l~l~G~hn~~NalaA~--a~~~~l 282 (439)
T 2x5o_A 210 VNADDALTMPIRGA-DERCVSFGVNMGDYHLNHQQ--GETWLRV-KGE-KVLNVKEMKLSGQHNYTNALAAL--ALADAA 282 (439)
T ss_dssp EETTCGGGSCSCCC-SSCCEEECSSSSSEEEEEET--TEEEEEE-TTE-EEEEGGGCSCCSHHHHHHHHHHH--HHHHHT
T ss_pred EeCCCHHHHHHhhc-CCcEEEEeCCCcCcCcEEEE--CCEEEEe-CCc-EEEeehhcCCCCHHHHHHHHHHH--HHHHHc
Confidence 99999987665543 456788885421 00 1001 1112221 121 11223478999999999999999 899999
Q ss_pred CCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccCC-CcEEEEEcCCCCCCCCccCCChhhh
Q 020059 239 GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLKG-HKCVILLGGQAKVLNGQESNGFEKL 317 (331)
Q Consensus 239 g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~~-~~~i~V~G~~~~~g~~~~~~~~~~l 317 (331)
|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|+.++++.++. +|+++|+|+|.+.+ |++++
T Consensus 283 gi~~~~i~~~L~~f~~~~gR~e~~~-~~~~~~vi~Ds~a~np~a~~~al~~l~~~~~~i~v~g~~~k~~------~~~~~ 355 (439)
T 2x5o_A 283 GLPRASSLKALTTFTGLPHRFEVVL-EHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSA------DFSPL 355 (439)
T ss_dssp TCCHHHHHHHHHHCCCCTTSSEEEE-EETTEEEEECTTCCSHHHHHHHHTTCCCSSCEEEEEESBCTTC------CCGGG
T ss_pred CCCHHHHHHHHHhCCCCCCceEEEE-EECCEEEEEeCCCCCHHHHHHHHHhCCcCCCEEEEEcCCCCCC------CHHHH
Confidence 9999999999999999999999996 3577899999889999999999999963 68999999987665 46678
Q ss_pred hhhhcc-eeEEEe
Q 020059 318 IEPLNH-HRCVIT 329 (331)
Q Consensus 318 ~~~l~~-~~~~i~ 329 (331)
++.+.+ .+.+++
T Consensus 356 ~~~l~~~~d~vi~ 368 (439)
T 2x5o_A 356 ARYLNGDNVRLYC 368 (439)
T ss_dssp GGGSCSSSEEEEE
T ss_pred HHHHHhhCCEEEE
Confidence 888764 454443
No 3
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=100.00 E-value=1.1e-54 Score=423.30 Aligned_cols=295 Identities=20% Similarity=0.223 Sum_probs=221.7
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-ecc----
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VGG---- 76 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-~~g---- 76 (331)
.++||+||+++++||++++|+++|+|++++.+++++.+.+..++|+||||||||||++|++++|++.|++++ +.|
T Consensus 81 ~d~vV~Spgi~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~~~~iGg~~~ 160 (524)
T 3hn7_A 81 PDLVVVGNAMKRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDAGFLIGGVPL 160 (524)
T ss_dssp CSEEEECTTCCTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCCEEECSCCBC
T ss_pred CCEEEECCCcCCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCEec
Confidence 478999999999999999999999999999999998542467899999999999999999999999998764 222
Q ss_pred ----------cCcccchhhhhhcccCCCCCCCCcEEEEEecccccccc---C--ceecccEEEEecCChhhhhccCCHHH
Q 020059 77 ----------NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP---N--KYFCPTVSVVLNLTPDHLERHKTMKN 141 (331)
Q Consensus 77 ----------~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~---~--~~~~p~i~viTni~~dHl~~~gt~e~ 141 (331)
++|.|....... .....+.+++++|+|+|+++.... . ..++|+++|||||++||+|+|||+|+
T Consensus 161 ~~~T~~nln~~ig~~~~~~~~~--~~~~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~iaViTNI~~DHLd~~gs~e~ 238 (524)
T 3hn7_A 161 VNTTDTNLQQVFAHSSYLGTEK--DDSDNSVNTGYFVIEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFADLDA 238 (524)
T ss_dssp CCSSCHHHHHHTTSSEECCCCC--CSSCTTCCCCEEEEECCSCCCBTTBCCCHHHHCCCSEEEECCCCCC------CHHH
T ss_pred cccCchhhhhhhhhHHhhCCCc--ccccccccCcEEEEECCCCCccccccccceeeecCCEEEEcCCChHHccccCCHHH
Confidence 223332110000 000002346899999999765421 1 13799999999999999999999999
Q ss_pred HHHHHHHhccccCCCceEEEeCCChhhHHHHhc-cCccEEEeccCC--------------------Cccccc---ccccc
Q 020059 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFP--------------------GVKIDT---EAKTA 197 (331)
Q Consensus 142 ~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~--------------------~~~~~~---~~~~~ 197 (331)
|+++|.++++.+++++.+|+|.|||.+..+... ...++++||... +.++.. .....
T Consensus 239 y~~aK~~i~~~~~~~g~~VlN~DD~~~~~~~~~~~~~~v~~fg~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~i~~~g~ 318 (524)
T 3hn7_A 239 IQTQFHHMVRMIPSTGKIIMPAATISLEDTLAKGVWTPIWRTSVIDSTISSVRREDSPLENSQAENSSDWQAELISADGS 318 (524)
T ss_dssp HHHHHHHHHTTSCTTSEEEEESSCHHHHHHHHTCCCSCEEEEEEEC-------------------CCCSEEEEEEETTTT
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHhccCCcEEEEecCcccccccccccccccccccCCCCcEEEEEEECCce
Confidence 999999999999889999999999999887643 345678888531 111100 00122
Q ss_pred eEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCC
Q 020059 198 SFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKA 277 (331)
Q Consensus 198 ~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a 277 (331)
.|.+...+....+..+.++++|.||++|+++|+ +++..+|++.+.|+++|++|++++||||++. ..+++.+|||+ +
T Consensus 319 ~f~l~~~~~~~~~~~~~l~l~G~hn~~NalaA~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~g~~vi~D~-a 394 (524)
T 3hn7_A 319 QFTVSFNDNKEATALVNWSMSGLHNVNNALVAI--AAAYNIGVSVKTACAALSAFAGIKRRMELIG-DVNDILVFDDF-A 394 (524)
T ss_dssp EEEEEETTEEEEEEEEECSCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHTCCCBTTSSEEEE-EETTEEEEEEC-C
T ss_pred EEEEEECCccceeEEEEeCCCcHHHHHhHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCceEEEEE-ecCCcEEEEEC-C
Confidence 333333332200223579999999999999999 8999999999999999999999999999996 45789999997 8
Q ss_pred CCHHHHHHHHhccC----CCcEEEEEcCC
Q 020059 278 TNLEATCTGLMDLK----GHKCVILLGGQ 302 (331)
Q Consensus 278 ~np~s~~~al~~~~----~~~~i~V~G~~ 302 (331)
|||++++++++.++ ++|+++|||++
T Consensus 395 hnp~~~~a~l~~l~~~~~~~r~i~V~g~~ 423 (524)
T 3hn7_A 395 HHPTAITTTLDGAKKKLADRRLWAIIEPR 423 (524)
T ss_dssp CSHHHHHHHHHHHHHHHTTSCEEEEEECC
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 99999999988763 46899999985
No 4
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=100.00 E-value=1.4e-54 Score=419.72 Aligned_cols=307 Identities=15% Similarity=0.220 Sum_probs=236.0
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCC-eeecccCcc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIE-AFVGGNLGN 80 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~-~~~~g~~g~ 80 (331)
.++||+||+++++||++++|+++|+|++++++++++++ +..++|+||||||||||++||+++|++.|++ +...|+++.
T Consensus 82 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~~gg~~~ 160 (494)
T 4hv4_A 82 ASVVVVSTAISADNPEIVAAREARIPVIRRAEMLAELM-RYRHGIAVAGTHGKTTTTAMLSSIYAEAGLDPTFVNGGLVK 160 (494)
T ss_dssp CSEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEECSSSHHHHHHHHHHHHHHTTCCCEEEEEEEET
T ss_pred CCEEEECCCCCCCCHHHHHHHHCCCCEEcHHHHHHHHh-cCCCEEEEecCCChHHHHHHHHHHHHhcCCCCEEEECCccc
Confidence 47899999999999999999999999999999999887 4568999999999999999999999999985 334343322
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceE
Q 020059 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (331)
++..... ..+.+++|+|+|++.... ..++|+++|||||++||+|+| +|+|+|+++|.++++.+++++.+
T Consensus 161 ~~g~~~~--------~~~~d~~VlE~~e~~~s~--~~~~P~iaVITNI~~DHld~~G~t~e~~a~aK~~i~~~~~~~g~~ 230 (494)
T 4hv4_A 161 AAGTHAR--------LGSSRYLIAEADESDASF--LHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 230 (494)
T ss_dssp TTTEEEE--------CCSSSEEEEECCCGGGGG--GGCCCSEEEECCCCCSSCCSSTTHHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccccc--------cCCCcEEEEEcccccccc--ccccCCEEEEcCCCHHHhhhhccCHHHHHHHHHHHHhcCCCCCEE
Confidence 2221110 135789999999765432 247999999999999999999 79999999999999988888999
Q ss_pred EEeCCChhhHHHHhccCccEEEeccCCCccccc-----ccccceEEEecCce-eEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGV-VSQLQLHNMKVMGRHNYHNAAVAALSV 233 (331)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~l~l~G~~n~~NalaA~~~a 233 (331)
|+|.|||....+......++.+||...+.++.. +.....|.+...+. ... +.++++|+||++|+++|+ +
T Consensus 231 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~~~---~~l~l~G~hnv~NalaAi--a 305 (494)
T 4hv4_A 231 VMCIDDPVVRELLPRVGRHITTYGFSDDADVQIASYRQEGPQGHFTLRRQDKPLIE---VTLNAPGRHNALNAAAAV--A 305 (494)
T ss_dssp EEETTSHHHHHHGGGCCSCEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCEE---EEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCceEEEEEEEeCCEEEEEEEECCceEEE---EEecCCcHHHHHHHHHHH--H
Confidence 999999999988877667888888643222111 11122333332221 112 468999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---------CcEEEEEcCCCCCHHHHHHHHhcc----CCCcEEEEEc
Q 020059 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---------QGVTWVDDSKATNLEATCTGLMDL----KGHKCVILLG 300 (331)
Q Consensus 234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---------~~~~iidD~~a~np~s~~~al~~~----~~~~~i~V~G 300 (331)
++..+|++.+.|+++|++|++++||||++. .. +++.+||| |||||++++++++.+ +++|+++|+|
T Consensus 306 ~a~~lgi~~~~i~~~L~~f~g~~~R~e~v~-~~~~~~~~~~~~g~~vi~D-yaHnp~~i~a~l~al~~~~~~~rii~V~g 383 (494)
T 4hv4_A 306 VATEEGIEDEDILRALVGFQGTGRRFDFLG-NFPLAPVNGKEGSAMLVDD-YGHHPTEVDATIKAARAGWPDKRIVMLFQ 383 (494)
T ss_dssp HHHHHTCCHHHHHHHHHHCCCBTTSSEEEE-EEESHHHHSCSSEEEEEEE-CCCSHHHHHHHHHHHHHHCTTSEEEEEEC
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCccEEee-eccccccccCCCCeEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEEc
Confidence 999999999999999999999999999996 33 48999999 599999999987765 2458899998
Q ss_pred CCCCCCCCccCCChhhhhhhhcceeEEEe
Q 020059 301 GQAKVLNGQESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 301 ~~~~~g~~~~~~~~~~l~~~l~~~~~~i~ 329 (331)
....... ...+.+++..+...+.+|+
T Consensus 384 ~~~~~r~---k~~~~~~~~~~~~aD~vil 409 (494)
T 4hv4_A 384 PHRYTRT---RDLYDDFANVLSQVDVLLM 409 (494)
T ss_dssp CBCHHHH---HHTHHHHHHHHTTSSEEEE
T ss_pred CCCCCch---HHHHHHHHHHHhcCCEEEE
Confidence 6431110 0124455555555555543
No 5
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.6e-53 Score=408.66 Aligned_cols=308 Identities=20% Similarity=0.268 Sum_probs=224.7
Q ss_pred eeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----Cc
Q 020059 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (331)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g 79 (331)
.+|.++.++++.|.+. +++..++|++++...+.. .+.++|+||||||||||++||+++|++.|...++.|+ +|
T Consensus 64 ~vv~~~~~~~~~p~i~--v~~~~~~l~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~t~g~~n~~ig 140 (452)
T 1gg4_A 64 ALLVSRPLDIDLPQLI--VKDTRLAFGELAAWVRQQ-VPARVVALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIG 140 (452)
T ss_dssp EEEESSCCSCSSCEEE--ESCHHHHHHHHHHHHHHH-SCCEEEEEECSSCHHHHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCcCCCCCEEE--ECCHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeeccccccCCcc
Confidence 4667776655556544 345556667777666543 3679999999999999999999999999976666666 44
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEeccc-cccc--cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSY-QMEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~-~~~~--~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~ 156 (331)
.|.+... ...++|++|+|+|++ .++. ....++|+++|||||++||+|+|||+|+|+++|++|++.++++
T Consensus 141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNI~~DHld~~gt~e~~~~aK~~i~~~~~~~ 212 (452)
T 1gg4_A 141 VPMTLLR--------LTPEYDYAVIELGANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPEN 212 (452)
T ss_dssp HHHHHTT--------CCTTCSEEEEECCCSSSSHHHHHHHHHCCSEEEECCCC--------CHHHHHHHHHGGGGGCCTT
T ss_pred hhHHHHc--------CCCCCcEEEEEeCCCCcchHHHHhCccCCCEEEECCCChHHhhhcCCHHHHHHHHHHHHhhcccC
Confidence 4543221 145689999999964 4442 2223789999999999999999999999999999999988888
Q ss_pred ceEEEeCCChhhHHHHh-ccCccEEEeccCC---Ccccc---cccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHH
Q 020059 157 KLGLLPFGNQHLNEAIK-GHRFNLAWIGAFP---GVKID---TEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (331)
Q Consensus 157 ~~~v~n~dd~~~~~~~~-~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA 229 (331)
+.+|+|.|||....+.. ....++++||... ++... .......|.+...+... .+.++++|+||++|+++|
T Consensus 213 ~~~V~n~dd~~~~~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~g~~~~~~~~~~~~---~~~l~l~G~hn~~NalaA 289 (452)
T 1gg4_A 213 GIAIMNADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSV---DVLLPLPGRHNIANALAA 289 (452)
T ss_dssp CEEEEETTBCCHHHHHHHHTTSEEEEECSSCTTCSBEEEEEEECSSSEEEEEEETTEEE---EEEECSSSTHHHHHHHHH
T ss_pred CEEEEeCCcHHHHHHHHhhcCCCEEEEeCCCCCCcEEEEEEEEcCCceEEEEEECCCEE---EEEeCCCcHHHHHHHHHH
Confidence 99999999998877632 1145778888642 22110 01111233333222222 247899999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCCCC
Q 020059 230 ALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKVLN 307 (331)
Q Consensus 230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~g~ 307 (331)
+ +++..+|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++ ++|+++|+|+|.++|+
T Consensus 290 ~--a~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~vidDsyahnp~s~~~~l~~l~~~~~~~i~V~G~~~e~g~ 366 (452)
T 1gg4_A 290 A--ALSMSVGATLDAIKAGLANLKAVPGRLFPIQ-LAENQLLLDDSYNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGA 366 (452)
T ss_dssp H--HHHHHTTCCHHHHHHHHTTCCCCTTSSEEEE-EETTEEEEECCSCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTT
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCCCCceEEE-CCCCcEEEEeCCCCCHHHHHHHHHHHHhccCCEEEEECCccccCC
Confidence 9 8999999999999999999999999999996 356789999988999999999998874 2689999999999998
Q ss_pred CccCCChhhhhhhhcc--eeEEEe
Q 020059 308 GQESNGFEKLIEPLNH--HRCVIT 329 (331)
Q Consensus 308 ~~~~~~~~~l~~~l~~--~~~~i~ 329 (331)
+++ .+++++.+.+.+ .+.+|+
T Consensus 367 ~~~-~~~~~~~~~~~~~~~d~vi~ 389 (452)
T 1gg4_A 367 ESE-ACHVQVGEAAKAAGIDRVLS 389 (452)
T ss_dssp HHH-HHHHHHHHHHHHHTCSEEEE
T ss_pred hhH-HHHHHHHHHHHHcCCCEEEE
Confidence 763 347778887753 455554
No 6
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A alanine ligase, MURF protein; HET: 1LG; 2.50A {Streptococcus pneumoniae} PDB: 2am2_A*
Probab=100.00 E-value=7e-54 Score=411.65 Aligned_cols=303 Identities=18% Similarity=0.179 Sum_probs=231.1
Q ss_pred eeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc----Cc
Q 020059 4 LWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN----LG 79 (331)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~----~g 79 (331)
.+|.++.++ +.|.+. +++..++|++++..++.. .+.++|+||||||||||++||+++|++.|+++.+.|+ +|
T Consensus 65 ~vv~~~~~~-~~p~i~--v~~~~~al~~la~~~~~~-~~~~vI~VTGTnGKTTT~~~l~~iL~~~g~~~~s~g~~n~~ig 140 (454)
T 2am1_A 65 VTLSEKEVS-NHPYIL--VDDVLTAFQSLASYYLEK-TTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIG 140 (454)
T ss_dssp EEEESSCCC-SSCEEE--CSCHHHHHHHHHHHHHHH-HCCEEEEEECCCSSSCHHHHHHHHHTTTSCEEECCTTCCSTTH
T ss_pred EEEECCCCC-CCCEEE--ECCHHHHHHHHHHHHhhC-CCCCEEEEeCCCCcHHHHHHHHHHHHhcCCEeecCCccCcccc
Confidence 567777765 566554 355556677777766543 2678999999999999999999999999987777777 45
Q ss_pred ccchhhhhhcccCCCCCCCCcEEEEEecccc-ccc--cCceecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCC
Q 020059 80 NPLSEAAFHCIALPSSKPKFQVAVVEVSSYQ-MEI--PNKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNT 156 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~-~~~--~~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~ 156 (331)
.|.+... ...++|++|+|+|+++ ++. ....++|+++|||||++||+|+|||+|+|+++|++|++.++++
T Consensus 141 ~p~t~~~--------~~~~~d~~VlE~g~~~~~~~~~~~~~~~p~vaviTNi~~DHld~~gt~e~~a~aK~~i~~~~~~~ 212 (454)
T 2am1_A 141 LPYTVLH--------MPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASG 212 (454)
T ss_dssp HHHHHHT--------CCTTCCEEEEECCCSSTTHHHHHHHHHCCSEEEECCCCCSSCTTCCCHHHHHHHHGGGGTTCCTT
T ss_pred hHHHHhc--------CCCCCcEEEEEcCCCCcchHHHHhCccCCCEEEEcCCchHhhhhcCCHHHHHHHHHHHHhhcccC
Confidence 5544322 1457899999999854 342 2223789999999999999999999999999999999988888
Q ss_pred ceEEEeCCChhhHHHHhccCccEEEeccCCCccc---ccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059 157 KLGLLPFGNQHLNEAIKGHRFNLAWIGAFPGVKI---DTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (331)
Q Consensus 157 ~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a 233 (331)
+.+|+|.|| ....+... ..++++||...+.++ ..+.....|.+...+. .+.++++|.||++|+++|+ +
T Consensus 213 ~~~V~n~dd-~~~~~~~~-~~~~~~~g~~~~~d~~~i~~~~~~~~~~~~~~~~-----~~~l~l~G~hn~~NalaA~--a 283 (454)
T 2am1_A 213 SLLLAPADP-IVEDYLPI-DKKVVRFGQGAELEITDLVERKDSLTFKANFLEQ-----ALDLPVTGKYNATNAMIAS--Y 283 (454)
T ss_dssp CEEEEESCG-GGGGGCCS-SSEEEEESTTSSBCEEEEEECSSCEEEEETTCSS-----EEEESSCCHHHHHHHHHHH--H
T ss_pred CEEEEEcHH-HHHHHHhc-CCcEEEEeCCCCCceeeeEEeCCceEEEEEecCc-----EEEecCCCHHHHHHHHHHH--H
Confidence 999999999 76655544 457788886432211 0001111233321111 2468999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---C---CcEEEEEcCCCCCCC
Q 020059 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---G---HKCVILLGGQAKVLN 307 (331)
Q Consensus 234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~---~~~i~V~G~~~~~g~ 307 (331)
++..+|++.+.|+++|++|+++|||||++. ..+++.+|||+|||||+|++++++.++ . +|+++|+|+|.+.|+
T Consensus 284 ~~~~lgi~~~~i~~~L~~~~~~~gR~e~~~-~~~~~~iiDDsyahnp~s~~~~l~~l~~~~~~~~~~~i~V~G~~~e~G~ 362 (454)
T 2am1_A 284 VALQEGVSEEQIRLAFQHLELTRNRTEWKK-AANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGD 362 (454)
T ss_dssp HHHHTTCCHHHHHHHGGGCCCCCCCSCEEC-CTTTCEEEEECSCCSHHHHHHHHHHHTTSCCCSSCEEEEEEECCCCCCT
T ss_pred HHHHcCCCHHHHHHHHHhCCCccCCeeEEE-CCCCeEEEEeCCCCCHHHHHHHHHHHHhcccccCCCEEEEECCchhcCc
Confidence 999999999999999999999999999995 345788999988999999999998874 2 689999999999998
Q ss_pred CccCCChhhhhhhhcc--eeEEEe
Q 020059 308 GQESNGFEKLIEPLNH--HRCVIT 329 (331)
Q Consensus 308 ~~~~~~~~~l~~~l~~--~~~~i~ 329 (331)
.+. .+++++.+.+.+ .+.+|+
T Consensus 363 ~~~-~~~~~~~~~~~~~~~d~vi~ 385 (454)
T 2am1_A 363 QSV-QLHNQMILSLSPDVLDIVIF 385 (454)
T ss_dssp THH-HHHHHGGGGCCTTTCSEEEE
T ss_pred HHH-HHHHHHHHHHHhcCCCEEEE
Confidence 763 347788887754 455554
No 7
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=100.00 E-value=6e-52 Score=401.62 Aligned_cols=306 Identities=16% Similarity=0.202 Sum_probs=235.9
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe-e-ecccCcc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGN 80 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~-~-~~g~~g~ 80 (331)
.+||+|++++++||++++|+++++|++++.+.+.+++ ++.++|+||||||||||++||+++|++.|+++ . ++|+++.
T Consensus 80 ~~vv~s~~i~~~~p~~~~a~~~~ipvl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 158 (491)
T 2f00_A 80 SVVVVSSAISADNPEIVAAHEARIPVIRRAEMLAELM-RFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKA 158 (491)
T ss_dssp SEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-TTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCeecc
Confidence 5799999999999999999999999999999999887 45799999999999999999999999999863 2 4565542
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceE
Q 020059 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (331)
+.... ...+.|++|+|+|+.+.. ...++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus 159 ~~~~~---------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 227 (491)
T 2f00_A 159 AGVHA---------RLGHGRYLIAEADESDAS--FLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFLHNLPFYGRA 227 (491)
T ss_dssp TTEEE---------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCSCSGGGTTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccc---------cCCCCCEEEEEeCCCccc--hhcCCCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHHhCCCCCEE
Confidence 21111 123578999999965432 2346899999999999999999 79999999999999988888999
Q ss_pred EEeCCChhhHHHHhccCccEEEeccCCCccccc-----ccccceEEEecCc-eeEEEEeecCCCCcHHHHHHHHHHHHHH
Q 020059 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVG-VVSQLQLHNMKVMGRHNYHNAAVAALSV 233 (331)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~l~l~G~~n~~NalaA~~~a 233 (331)
|+|.|||....+......++++||.....++.. +.....|.+...+ ... .+.++++|.||++|+++|+ +
T Consensus 228 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~l~G~hn~~NalaAi--a 302 (491)
T 2f00_A 228 VMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKEPM---RVTLNAPGRHNALNAAAAV--A 302 (491)
T ss_dssp EEETTSHHHHHHGGGCCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTSCCE---EEEESSCSHHHHHHHHHHH--H
T ss_pred EEECCCHHHHHHHHhcCCcEEEEeCCCCCCEEEEEEEEcCCceEEEEEECCceEE---EEEEccchHHHHHHHHHHH--H
Confidence 999999998888776666788888643221110 1111233332212 111 2468999999999999999 8
Q ss_pred HHHHcCCCHHHHHHHhhcCCCCCCceeEEeeec-------Cc-EEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcC
Q 020059 234 LGLDIGVDVEALNSTIEILRTPPHRMQIVHRDI-------QG-VTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG 301 (331)
Q Consensus 234 ~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~-------~~-~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~ 301 (331)
++..+|++.+.|+++|++|+++|||||++.... ++ +.|||| |||||++++++++.++ .+|+++|+|.
T Consensus 303 ~a~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~~g~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~ 381 (491)
T 2f00_A 303 VATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAMLVDD-YGHHPTEVDATIKAARAGWPDKNLVMLFQP 381 (491)
T ss_dssp HHHHHTCCHHHHHHHHHTCCCBTTSSEEEEEEESSSSSSCSSEEEEEEE-CCCSHHHHHHHHHHHHTTCCSSEEEEEECC
T ss_pred HHHHcCCCHHHHHHHHHhCCCCCCCCEEEccccccccccCCCcEEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECC
Confidence 899999999999999999999999999996211 36 899999 5999999999877763 3578889987
Q ss_pred CCCCCCCccCCChhhhhhhhcceeEEEe
Q 020059 302 QAKVLNGQESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 302 ~~~~g~~~~~~~~~~l~~~l~~~~~~i~ 329 (331)
+....+ ...+.++.+.+...+.+|+
T Consensus 382 ~~~~r~---k~~~~~~~~~~~~~d~vil 406 (491)
T 2f00_A 382 HRFTRT---RDLYDDFANVLTQVDTLLM 406 (491)
T ss_dssp BCHHHH---TTTHHHHHHHHTTSSEEEE
T ss_pred CCCcch---HHHHHHHHHHHHhCCEEEE
Confidence 421110 1125677776665555554
No 8
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=100.00 E-value=3.1e-52 Score=402.27 Aligned_cols=307 Identities=17% Similarity=0.194 Sum_probs=236.0
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe-e-ecccCcc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA-F-VGGNLGN 80 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~-~-~~g~~g~ 80 (331)
.+||+|++++++||++++|+++++|++++.+.+.+++ ++.++|+||||||||||++||+++|++.|+++ . ++|+++.
T Consensus 79 ~~vv~s~~i~~~~~~~~~a~~~~i~vl~~~~~l~~~~-~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~p~~~igg~~~~ 157 (475)
T 1p3d_A 79 SVVVVSSAIKDDNPELVTSKQKRIPVIQRAQMLAEIM-RFRHGIAVAGTHGKTTTTAMISMIYTQAKLDPTFVNGGLVKS 157 (475)
T ss_dssp SEEEECTTSCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HTSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEEEEEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHh-cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEECCcccc
Confidence 5799999999999999999999999999999998887 45799999999999999999999999999863 2 4565542
Q ss_pred cchhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhcc-CCHHHHHHHHHHhccccCCCceE
Q 020059 81 PLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERH-KTMKNYALTKCHLFSHMVNTKLG 159 (331)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~-gt~e~~~~~K~~i~~~~~~~~~~ 159 (331)
.-... ...+.|++|+|+|+.+.. ...++|+++|||||++||+|+| +|+|+|+++|.+++..+++++.+
T Consensus 158 ~~~~~---------~~~~~d~~VlE~~~~~~~--~~~~~p~vaviTNI~~DHld~~G~t~e~ia~aK~~i~~~~~~~~~~ 226 (475)
T 1p3d_A 158 AGKNA---------HLGASRYLIAEADESDAS--FLHLQPMVSVVTNMEPDHMDTYEGDFEKMKATYVKFLHNLPFYGLA 226 (475)
T ss_dssp TTEEE---------ECCSSSEEEEECCCTTSG--GGGCCCSEEEECCCCCCSGGGGTTCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ccccc---------ccCCCCEEEEEecCCcCc--cccccCCEEEEcCCChhhhhhhcCCHHHHHHHHHHHHhhCCCCCEE
Confidence 21111 123578999999965432 2346899999999999999999 79999999999999988888999
Q ss_pred EEeCCChhhHHHHhccCccEEEeccCCCccccc-----ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHH
Q 020059 160 LLPFGNQHLNEAIKGHRFNLAWIGAFPGVKIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVL 234 (331)
Q Consensus 160 v~n~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~ 234 (331)
|+|.|||....+......++++||...+.++.. +.....|.+...+... ..+.++++|+||++|+++|+ ++
T Consensus 227 V~n~dd~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~f~~~~~~~~~--~~~~l~l~G~hn~~NalaAi--a~ 302 (475)
T 1p3d_A 227 VMCADDPVLMELVPKVGRQVITYGFSEQADYRIEDYEQTGFQGHYTVICPNNER--INVLLNVPGKHNALNATAAL--AV 302 (475)
T ss_dssp EEETTCHHHHHHHHHHCSEEEEEESSTTCSEEEEEEEEETTEEEEEEECTTCCE--EEEEESSCSHHHHHHHHHHH--HH
T ss_pred EEECCCHHHHHHHHhcCCCEEEEecCCCCcEEEEEEEEcCCceEEEEEECCCeE--EEEEEcCccHHHHHHHHHHH--HH
Confidence 999999998887765556788888643221110 1112233332222110 12478999999999999999 89
Q ss_pred HHHcCCCHHHHHHHhhcCCCCCCceeEEeeec---CcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCC
Q 020059 235 GLDIGVDVEALNSTIEILRTPPHRMQIVHRDI---QGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLN 307 (331)
Q Consensus 235 ~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~---~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~ 307 (331)
+..+|++.+.|+++|++|+++|||||++.... +++.+||| |||||++++++++.++ .+|+++|+|.+....+
T Consensus 303 ~~~lgi~~~~i~~~L~~f~~~~gR~e~v~~~~~~~~~~~vi~D-yaHnp~~~~a~l~al~~~~~~~~i~~v~g~~~~~r~ 381 (475)
T 1p3d_A 303 AKEEGIANEAILEALADFQGAGRRFDQLGEFIRPNGKVRLVDD-YGHHPTEVGVTIKAAREGWGDKRIVMIFQPHRYSRT 381 (475)
T ss_dssp HHHTTCCHHHHHHHHHTCCCBTTSSEEEEEEEETTEEEEEEEE-CCCSHHHHHHHHHHHHHHHCSSCEEEEECCBCHHHH
T ss_pred HHHcCCCHHHHHHHHHhCCCCCCCCEEEecccccCCCcEEEEe-CCCCHHHHHHHHHHHHhhcCCCeEEEEECCCCCccH
Confidence 99999999999999999999999999996211 37899999 5999999999877763 3688999987531110
Q ss_pred CccCCChhhhhhhhcceeEEEe
Q 020059 308 GQESNGFEKLIEPLNHHRCVIT 329 (331)
Q Consensus 308 ~~~~~~~~~l~~~l~~~~~~i~ 329 (331)
...+.++.+.++..+.+|+
T Consensus 382 ---~~~~~~~~~~~~~~d~vi~ 400 (475)
T 1p3d_A 382 ---RDLFDDFVQVLSQVDALIM 400 (475)
T ss_dssp ---HHTHHHHHHHHTTSSEEEE
T ss_pred ---HHHHHHHHHHHHhCCEEEE
Confidence 0125677776665555554
No 9
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=5.4e-50 Score=385.56 Aligned_cols=294 Identities=18% Similarity=0.163 Sum_probs=220.2
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCC--CCcEEEEeCCCChHhHHHHHHHHHHhcCCCee--eccc
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPR--SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF--VGGN 77 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~--~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~--~~g~ 77 (331)
.++||+||+++++||++++|+++|+|++++.+++.++. + +.++|+||||||||||++||+++|++.|++++ ++|+
T Consensus 72 ~d~vV~spgi~~~~p~~~~a~~~gi~v~~~~e~l~~~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~g~ 150 (469)
T 1j6u_A 72 PDLVIKTPAVRDDNPEIVRARMERVPIENRLHYFRDTL-KREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLGGI 150 (469)
T ss_dssp CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHH-HHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCEEEECCCcCCCCHHHHHHHHcCCcEEEHHHHHHHHH-hccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEECCe
Confidence 36899999999999999999999999999999998877 4 57899999999999999999999999999863 4555
Q ss_pred Ccccc-hhhhhhcccCCCCCCCCcEEEEEeccccccccCceecccEEEEecCChhhhhccCC-HHHHHHHHHHhccccCC
Q 020059 78 LGNPL-SEAAFHCIALPSSKPKFQVAVVEVSSYQMEIPNKYFCPTVSVVLNLTPDHLERHKT-MKNYALTKCHLFSHMVN 155 (331)
Q Consensus 78 ~g~~~-~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~~~~~~p~i~viTni~~dHl~~~gt-~e~~~~~K~~i~~~~~~ 155 (331)
+...- ....+ .+.+ +|+|+|+++. ....++|+++|||||++||+|+||| +|+|+++|.+++..++
T Consensus 151 ~~~~g~~~~~~---------~~~~-~V~E~~~~~~--~~~~~~p~vaviTNI~~DHld~~g~t~e~ia~ak~~~~~~~~- 217 (469)
T 1j6u_A 151 MDSLEHGNYEK---------GNGP-VVYELDESEE--FFSEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTD- 217 (469)
T ss_dssp CTTSTTSSEEC---------CSSC-EEEEECTTSG--GGGGCCCSEEEECCCCCCCGGGGTTCHHHHHHHHHHHHHTCS-
T ss_pred ecccCcccccc---------CCCC-EEEECCCccC--ccccccCCEEEEcCCCcchhhhhcCHHHHHHHHHHHHHhhCC-
Confidence 43321 11111 1346 9999998853 2334799999999999999999997 9999999999987653
Q ss_pred CceEEEeCCChhhHHHHhccCccEEEeccCC-Cccc--cccccc-ceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHH
Q 020059 156 TKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP-GVKI--DTEAKT-ASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAAL 231 (331)
Q Consensus 156 ~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~ 231 (331)
.+|+|.|||....+ ++++||... ++.. ..+... ..|.+...+.. +..+.++++|.||++|+++|+
T Consensus 218 --~~V~n~dd~~~~~~------~~~~~g~~~~d~~~~~~~~~~~~~~f~~~~~~~~--~~~~~l~l~G~hn~~NalaAi- 286 (469)
T 1j6u_A 218 --LVVTFAEDELTSHL------GDVTFGVKKGTYTLEMRSASRAEQKAMVEKNGKR--YLELKLKVPGFHNVLNALAVI- 286 (469)
T ss_dssp --EEEEETTCTTTGGG------CSEEECSSSSSEEEEEEEECSSCEEEEEEETTEE--EEEEEESSCSHHHHHHHHHHH-
T ss_pred --EEEEECCChhhccc------eEEEEECCCceEEEEEEECCCCCEEEEEEECCeE--EEEEEecCcCHHHHHHHHHHH-
Confidence 89999999976432 567777532 1111 001111 22333222221 123478999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHhhcCCCCCCceeEE--eeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcC--CC
Q 020059 232 SVLGLDIGVDVEALNSTIEILRTPPHRMQIV--HRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGG--QA 303 (331)
Q Consensus 232 ~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~--~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~--~~ 303 (331)
+++..+|++.+.|+++|++|+++|||||++ . ..+++.+||| |||||++++++++.++ .+|+++|+|. ..
T Consensus 287 -a~a~~lgi~~~~i~~~L~~f~g~~gR~e~v~~~-~~~g~~vi~D-~aHnp~~~~a~l~al~~~~~~~~i~~I~g~g~~~ 363 (469)
T 1j6u_A 287 -ALFDSLGYDLAPVLEALEEFRGVHRRFSIAFHD-PETNIYVIDD-YAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYS 363 (469)
T ss_dssp -HHHHHTTCCHHHHHHHHHHCCCCTTSSEEEEEE-TTTTEEEEEE-CCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--
T ss_pred -HHHHHcCCCHHHHHHHHHhCCCCCCCcEEEccc-ccCCcEEEEe-CCCCHHHHHHHHHHHHHhcCCCcEEEEEcCCCCC
Confidence 899999999999999999999999999999 4 3578999999 5999999998877653 3678889873 22
Q ss_pred CCCCCccCCC-hhhhhhhhcceeEEEe
Q 020059 304 KVLNGQESNG-FEKLIEPLNHHRCVIT 329 (331)
Q Consensus 304 ~~g~~~~~~~-~~~l~~~l~~~~~~i~ 329 (331)
++ .+ +.++.+.++..+.+|+
T Consensus 364 -r~-----~~~~~~l~~~~~~~d~vil 384 (469)
T 1j6u_A 364 -RL-----EREDGNFAKALQLADEVVV 384 (469)
T ss_dssp ------------CHHHHHHTTSSEEEE
T ss_pred -cc-----HHHHHHHHHHHhcCCEEEE
Confidence 21 13 4566665555555544
No 10
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=100.00 E-value=1.3e-48 Score=378.92 Aligned_cols=267 Identities=21% Similarity=0.176 Sum_probs=202.3
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCC-----------CCCCCCcEEEEEeccc
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY 109 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~VlE~~~~ 109 (331)
+.++|+||||||||||++||+++|++.|+++++.|+.+.++....... .+++ +...+++++|+|+|++
T Consensus 107 ~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gs~~~~i~~~~~~~~~t~~~~~~l~~~l~~~~~~~~d~~VlEvgs~ 186 (498)
T 1e8c_A 107 NLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH 186 (498)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEEETTEEEETTCCBCCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cCeEEEEeCCcChHHHHHHHHHHHHhCCCCEEEECCCCcccCCeeeecCCCCCCHHHHHHHHHHHHhCCCCEEEEEcCCc
Confidence 578999999999999999999999999999998888877655432211 1111 0145689999999987
Q ss_pred cccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccCCCceEEEeCCChhhHHHHhccCc---cEEEeccC
Q 020059 110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKGHRF---NLAWIGAF 185 (331)
Q Consensus 110 ~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~~~~---~~~~~~~~ 185 (331)
+++..+. .++|+++|||||+.||+|+|||+|+|+++|++|++. ++++.+|+|.|||....+...... ++++||..
T Consensus 187 ~l~~~rl~~~~p~vaViTNI~~DHld~~gt~e~ia~aK~~i~~~-~~~~~~V~n~dd~~~~~~~~~~~~~~~~v~~~g~~ 265 (498)
T 1e8c_A 187 GLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSE-HHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHIN 265 (498)
T ss_dssp HHHTTTTTTCBCSEEEECCCCSCCHHHHSSHHHHHHHHHHHHHT-SBCCEEEEETTSHHHHHHHTTCTTCEEEESSSCCC
T ss_pred hhhcccccccCCCEEEEeCCChhhhhccCCHHHHHHHHHHHhcc-CCCCeEEEECCCHHHHHHHHhhhccCCcEEEEecC
Confidence 7653221 268999999999999999999999999999999987 567899999999998887765433 56666643
Q ss_pred CCc---cccc-----ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCC
Q 020059 186 PGV---KIDT-----EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPH 257 (331)
Q Consensus 186 ~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~g 257 (331)
... ++.. ......|.+...+... .+.++++|.||++|+++|+ +++..+|++.+.|+++|++|+++||
T Consensus 266 ~~~~~~d~~~~~~~~~~~g~~f~~~~~~~~~---~~~l~l~G~hnv~NalaAi--a~~~~lGi~~~~i~~~L~~~~~~~g 340 (498)
T 1e8c_A 266 PNCHGRWLKATEVNYHDSGATIRFSSSWGDG---EIESHLMGAFNVSNLLLAL--ATLLALGYPLADLLKTAARLQPVCG 340 (498)
T ss_dssp TTTCSEEEEEEEEEECSSCEEEEEEETTCCE---EEEECSCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHGGGCCCCTT
T ss_pred CCCCcCCEEEEEEEEcCCceEEEEEECCceE---EEEecCCcHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCCCCCC
Confidence 211 1110 0111223332221111 2468999999999999999 8999999999999999999999999
Q ss_pred ceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC---CCcEEEEEcCCCCCCCCccCCChhhhhhhh
Q 020059 258 RMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---GHKCVILLGGQAKVLNGQESNGFEKLIEPL 321 (331)
Q Consensus 258 R~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l 321 (331)
|||++. ..+++.+|+| |||||+|++++++.++ ++|+++|||+..++.. .+++++..+
T Consensus 341 R~e~v~-~~~~~~vi~D-yahnP~s~~a~l~~l~~~~~~r~i~V~G~g~dr~~-----~~~~~~~~~ 400 (498)
T 1e8c_A 341 RMEVFT-APGKPTVVVD-YAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK-----GKRPLMGAI 400 (498)
T ss_dssp SSEEEC-CTTSCEEEEE-CCCSHHHHHHHHHHHHHTCSSCEEEEECCCSSSCS-----THHHHHHHH
T ss_pred ceEEEE-cCCCCEEEEE-CCCCHHHHHHHHHHHHhhCCCCEEEEECCCCCcch-----hHHHHHHHH
Confidence 999995 3457789999 6999999999988874 4689999998665522 356555444
No 11
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=100.00 E-value=5.7e-48 Score=355.16 Aligned_cols=247 Identities=17% Similarity=0.186 Sum_probs=193.7
Q ss_pred ceeeeeccccccCChHHHHHHHcCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCee-ec----c
Q 020059 2 WMLWLFLLEFQLKATGLACLLQSGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAF-VG----G 76 (331)
Q Consensus 2 ~~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~-~~----g 76 (331)
.++||+||+++++||++++|+++|+|++++++++++.+.++.++|+||||||||||++||+++|++.|+++. +. |
T Consensus 67 ~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~~g~~~~ 146 (326)
T 3eag_A 67 ADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGFLIGGVPE 146 (326)
T ss_dssp CSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEECSSEET
T ss_pred CCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEecceec
Confidence 478999999999999999999999999999999987532467899999999999999999999999998864 22 5
Q ss_pred cCcccchhhhhhcccCCCCCCCCcEEEEEecccccccc-----CceecccEEEEecCChhhhhccCCHHHHHHHHHHhcc
Q 020059 77 NLGNPLSEAAFHCIALPSSKPKFQVAVVEVSSYQMEIP-----NKYFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFS 151 (331)
Q Consensus 77 ~~g~~~~~~~~~~~~~~~~~~~~~~~VlE~~~~~~~~~-----~~~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~ 151 (331)
|+|.+.....-. .. ....+.+++|+|+|+++.... ...++|+++|||||++||+|+|||+|+|+++|.+|++
T Consensus 147 n~~~~~~~~~p~--~~-~~~~~~~~~V~E~ss~~~~~~~~~~~~~~~~P~vaviTNI~~DHLd~~gs~e~y~~aK~~i~~ 223 (326)
T 3eag_A 147 NFGVSARLPQTP--RQ-DPNSQSPFFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVR 223 (326)
T ss_dssp TSSCSEECCCCC--SS-CTTSCCCEEEEECCCSEEETTEEEEGGGGSCCSEEEECCCCCCCTTTSSSHHHHHHHHHHHHT
T ss_pred cCCcceecCCcc--cc-ccCCCCCEEEEEccccccchhhcccceeEecCCEEEECCCcHHHHhhcCCHHHHHHHHHHHHH
Confidence 666653211000 00 123467899999999765421 1237999999999999999999999999999999999
Q ss_pred ccCCCceEEEeCCChhhHHHHhc-cCccEEEeccCCCccccc-ccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHH
Q 020059 152 HMVNTKLGLLPFGNQHLNEAIKG-HRFNLAWIGAFPGVKIDT-EAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVA 229 (331)
Q Consensus 152 ~~~~~~~~v~n~dd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA 229 (331)
.+++++.+|+|.|||....+... ...++.+||...++.... ..... |.+...+.. +..+.++++|+||++|+++|
T Consensus 224 ~~~~~~~~V~n~Dd~~~~~~~~~~~~~~~~~~g~~~d~~~~~~~~~g~-f~~~~~~~~--~~~~~l~l~G~hNv~NalaA 300 (326)
T 3eag_A 224 TVPSEGLIVCNGRQQSLQDTLDKGCWTPVEKFGTEHGWQAGEANADGS-FDVLLDGKT--AGRVKWDLMGRHNRMNALAV 300 (326)
T ss_dssp TSCTTSEEEEESSCHHHHHHHTTCCCSCEEEESSSSSEEEEEECTTSC-EEEEETTEE--EEEECCCCCSHHHHHHHHHH
T ss_pred hCCCCCEEEEeCCCHHHHHHHhhccCCCEEEECCCCcEEEEEecCCcE-EEEEECCce--EEEEEecCCcHHHHHHHHHH
Confidence 98889999999999999887654 345678888543332110 01122 444333432 22358999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHhhcCCCCC
Q 020059 230 ALSVLGLDIGVDVEALNSTIEILRTPP 256 (331)
Q Consensus 230 ~~~a~~~~lg~~~~~i~~~l~~~~~~~ 256 (331)
+ +++..+|++.+.|+++|++|++++
T Consensus 301 i--a~a~~lGi~~~~i~~~L~~f~gv~ 325 (326)
T 3eag_A 301 I--AAARHVGVDIQTACEALGAFKNVK 325 (326)
T ss_dssp H--HHHHHHTCCHHHHHHHHHTCCCEE
T ss_pred H--HHHHHcCCCHHHHHHHHHhCCCCC
Confidence 9 899999999999999999999854
No 12
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=100.00 E-value=4.5e-48 Score=377.68 Aligned_cols=256 Identities=22% Similarity=0.247 Sum_probs=198.3
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccchhhhhhc-ccCC-----------CCCCCCcEEEEEeccc
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLSEAAFHC-IALP-----------SSKPKFQVAVVEVSSY 109 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~~~~~~~-~~~~-----------~~~~~~~~~VlE~~~~ 109 (331)
+.++|+||||||||||++||+++|++.|+++++.|+.+..+....... .+++ +.+.+++++|+|+|++
T Consensus 145 ~~~vI~VTGTnGKTTT~~ml~~iL~~~G~~~g~~gs~~~~i~~~~~~~~~tt~e~~~l~~~l~~~~~~~~d~~VlEvgs~ 224 (535)
T 2wtz_A 145 RLTVIGITGTSGKTTTTYLVEAGLRAAGRVAGLIGTIGIRVGGADLPSALTTPEAPTLQAMLAAMVERGVDTVVMEVSSH 224 (535)
T ss_dssp SSEEEEEESSSCHHHHHHHHHHHHHHTTCCEEEESSSCEEETTEEECCSSSSCCHHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred cceEEEeeCCCChHHHHHHHHHHHHHCCCCEEEECCcceeECCEecccCCccCcHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 568999999999999999999999999999999888776655332111 1111 1135789999999987
Q ss_pred cccccCc-eecccEEEEecCChhhhhccCCHHHHHHHHHHhccccC--CCceEEEeCCChhhHHHHhccCccEEEeccCC
Q 020059 110 QMEIPNK-YFCPTVSVVLNLTPDHLERHKTMKNYALTKCHLFSHMV--NTKLGLLPFGNQHLNEAIKGHRFNLAWIGAFP 186 (331)
Q Consensus 110 ~~~~~~~-~~~p~i~viTni~~dHl~~~gt~e~~~~~K~~i~~~~~--~~~~~v~n~dd~~~~~~~~~~~~~~~~~~~~~ 186 (331)
+++..+. .++|+++|||||+.||+|+|||+|+|+++|++|++.++ +++.+|+|.|||....+..... ++++||...
T Consensus 225 ~l~~~rl~~~~p~vaViTNI~~DHld~~gs~e~ia~aK~~i~~~~~~~~~g~~Vln~Dd~~~~~~~~~~~-~v~~~g~~~ 303 (535)
T 2wtz_A 225 ALALGRVDGTRFAVGAFTNLSRDHLDFHPSMADYFEAKASLFDPDSALRARTAVVCIDDDAGRAMAARAA-DAITVSAAD 303 (535)
T ss_dssp HHHTTTTTTCCEEEEEECCCCSCCTTTSSSHHHHHHHHHTTTCTTSTTCCSEEEEECSSHHHHHHHHHHS-SCEEEESSS
T ss_pred cccccccccCCcCEEEEcCCChHHhhhcCCHHHHHHHHHHHhccccccCCCeEEEECCCHHHHHHHHhcC-CEEEEecCC
Confidence 6543222 26899999999999999999999999999999999765 5689999999999887765433 678888643
Q ss_pred Cc-ccc-----cc-cccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCce
Q 020059 187 GV-KID-----TE-AKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRM 259 (331)
Q Consensus 187 ~~-~~~-----~~-~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~ 259 (331)
.. ++. .+ .....|.+...+... ..+.++++|.||++|+++|+ +++..+|++.+.|+++|++|+ +||||
T Consensus 304 ~~~d~~~~~i~~~~~~g~~f~~~~~~~~~--~~~~l~l~G~hnv~NalaAi--a~a~~lGi~~~~i~~~L~~~~-~~gR~ 378 (535)
T 2wtz_A 304 RPAHWRATDVAPTDAGGQQFTAIDPAGVG--HHIGIRLPGRYNVANCLVAL--AILDTVGVSPEQAVPGLREIR-VPGRL 378 (535)
T ss_dssp SCCSEEEEEEEEETTTEEEEEEECTTSCE--EEEEESCCSHHHHHHHHHHH--HHHHHTTCCHHHHHHHHTTCC-CTTSS
T ss_pred CcCcEEEEEEEEcCCCCeEEEEEeCCceE--EEEEeCCCCHHHHHHHHHHH--HHHHHcCCCHHHHHHHHHhCC-CCCce
Confidence 21 111 01 112234433222110 12478999999999999999 899999999999999999999 89999
Q ss_pred eEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--CCcEEEEEcCCCCC
Q 020059 260 QIVHRDIQGVTWVDDSKATNLEATCTGLMDLK--GHKCVILLGGQAKV 305 (331)
Q Consensus 260 e~~~~~~~~~~iidD~~a~np~s~~~al~~~~--~~~~i~V~G~~~~~ 305 (331)
|++. ..++..+|+| |||||+|++++++.++ .+|+++|||+++++
T Consensus 379 e~v~-~~~~~~viiD-yahNP~s~~aal~~l~~~~~r~i~V~G~~gdr 424 (535)
T 2wtz_A 379 EQID-RGQGFLALVD-YAHKPEALRSVLTTLAHPDRRLAVVFGAGGDR 424 (535)
T ss_dssp EECC-SSCSSEEEEE-CCCSHHHHHHHHHTTCCSSSCEEEEECCCTTS
T ss_pred EEEE-cCCCcEEEEE-CCCCHHHHHHHHHHhhCCCCcEEEEECCCCcc
Confidence 9995 3457778888 6999999999999885 46899999998765
No 13
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=100.00 E-value=6e-46 Score=358.42 Aligned_cols=284 Identities=17% Similarity=0.179 Sum_probs=207.0
Q ss_pred CeeeeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCc------------ccchhhhhh--
Q 020059 26 KRVMSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLG------------NPLSEAAFH-- 88 (331)
Q Consensus 26 ~~~l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g------------~~~~~~~~~-- 88 (331)
.+.|.|+..+.+.+. ++.++|+||||||||||++||+++|++.|+++++.++.+ .+++...+.
T Consensus 44 ~~~L~r~~~ll~~lg~p~~~~~vI~VtGTNGKtST~~~l~~iL~~~G~~vG~~tSp~l~~~~eri~i~G~~i~~~~~~~~ 123 (487)
T 2vos_A 44 DPSLTRISALMDLLGSPQRSYPSIHIAGTNGKTSVARMVDALVTALHRRTGRTTSPHLQSPVERISIDGKPISPAQYVAT 123 (487)
T ss_dssp CTTCHHHHHHHHHTTCGGGSSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCchhcCeEEEEeCCCCcHHHHHHHHHHHHHcCCCeEEECCCCcCcccceEEECCEECCHHHHHHH
Confidence 346788888887662 467899999999999999999999999999996544421 111110000
Q ss_pred -----c---------------ccCC--------------CCCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhh
Q 020059 89 -----C---------------IALP--------------SSKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHL 133 (331)
Q Consensus 89 -----~---------------~~~~--------------~~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl 133 (331)
. ...+ +.+.++|++|+|+|++ .++.++ .++|+++|||||+.||+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~fe~~t~~a~~~f~~~~~d~~VlEvg~gg~~d~tn-~i~p~vaVITnI~~DHl 202 (487)
T 2vos_A 124 YREIEPLVALIDQQSQASAGKGGPAMSKFEVLTAMAFAAFADAPVDVAVVEVGMGGRWDATN-VINAPVAVITPISIDHV 202 (487)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTC-SSCCSEEEECCCCCCBC
T ss_pred HHHHHHHHhhhhhccccccccCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCcccccc-ccCCCEEEECCcchhhh
Confidence 0 0000 0145789999999986 556554 47999999999999999
Q ss_pred hccC-CHHHHHHHHHHhcccc---CCCceEEEeCCChhhHHHHh----ccCccEEEeccCCCccccc---ccccceEEEe
Q 020059 134 ERHK-TMKNYALTKCHLFSHM---VNTKLGLLPFGNQHLNEAIK----GHRFNLAWIGAFPGVKIDT---EAKTASFEVP 202 (331)
Q Consensus 134 ~~~g-t~e~~~~~K~~i~~~~---~~~~~~v~n~dd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 202 (331)
++|| |+|+|+++|++|++.+ ++++.+|+|.|||....+.. ....++.+++.+ +.+.. ......|.+.
T Consensus 203 d~lG~t~e~ia~~Ka~i~~~~~~~k~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~g~d--~~~~~~~~~~~g~~~~~~ 280 (487)
T 2vos_A 203 DYLGADIAGIAGEKAGIITRAPDGSPDTVAVIGRQVPKVMEVLLAESVRADASVAREDSE--FAVLRRQIAVGGQVLQLQ 280 (487)
T ss_dssp SCSSCCHHHHHHHHHTTCCCCC--CCCCEEEECCCCHHHHHHHHHHHHHTTCEEEEBTTT--BEEEEEEEETTEEEEEEE
T ss_pred hhhCCcHHHHHHHHHHHhhcccccCCCCEEEEeCCCHHHHHHHHHHHHHcCCeEEEecCc--eEEEeeccccCCceEEEe
Confidence 9999 9999999999999764 67889999999998655432 223466677642 21110 0112234333
Q ss_pred cCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcC
Q 020059 203 AVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI-------GVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDS 275 (331)
Q Consensus 203 ~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l-------g~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~ 275 (331)
..+..+ ..+.++++|.||++|+++|+ +++..+ |++.+.|+++|++|+ .|||||++. . +..+|+|
T Consensus 281 ~~~~~~--~~~~l~l~G~hn~~Na~aAi--aa~~~l~~~~~~~gi~~~~i~~gL~~~~-~pGR~e~v~--~-~~~vi~D- 351 (487)
T 2vos_A 281 GLGGVY--SDIYLPLHGEHQAHNAVLAL--ASVEAFFGAGAQRQLDGDAVRAGFAAVT-SPGRLERMR--S-APTVFID- 351 (487)
T ss_dssp ETTEEE--EEEEECCCSHHHHHHHHHHH--HHHHHHTTC----CCCHHHHHHHHHTCC-CTTSSEEEE--T-TTEEEEC-
T ss_pred cCCccc--ceeecCCCCHHHHHHHHHHH--HHHHHHhhccccCCCCHHHHHHHHHhCc-CCCceEEEc--C-CCeEEEE-
Confidence 222221 12468999999999999999 777777 799999999999999 599999995 3 3467788
Q ss_pred CCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059 276 KATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI 328 (331)
Q Consensus 276 ~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i 328 (331)
+||||+|++++++.++ .+|+++|||++.++ |++++++.+.+ .+.+|
T Consensus 352 ~AHNp~a~~a~l~~l~~~~~~~~~i~V~G~~~dk-------d~~~~~~~l~~~~d~vi 402 (487)
T 2vos_A 352 AAHNPAGASALAQTLAHEFDFRFLVGVLSVLGDK-------DVDGILAALEPVFDSVV 402 (487)
T ss_dssp CCCSHHHHHHHHHHHHHSCCCSEEEEEECCBTTB-------CHHHHHHHHTTTCSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCC-------CHHHHHHHHHhhCCEEE
Confidence 5999999999988763 36899999999887 68888888754 34444
No 14
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=100.00 E-value=1.1e-45 Score=352.08 Aligned_cols=281 Identities=16% Similarity=0.140 Sum_probs=204.1
Q ss_pred eeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhh------
Q 020059 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAF------ 87 (331)
Q Consensus 29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~------ 87 (331)
+.++..+.+.+. ++.++|+||||||||||++||+++|++.|+++++.++ .|.+++...+
T Consensus 22 l~~~~~~l~~lg~p~~~~~vI~VtGTnGKtTT~~~l~~iL~~~G~~vg~~~sp~l~~~~eri~i~g~~i~~~~~~~~~~~ 101 (428)
T 1jbw_A 22 HRRILTLLHALGNPQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLYTSPFIMRFNERIMIDHEPIPDAALVNAVAF 101 (428)
T ss_dssp CHHHHHHHHHTTCGGGSSCEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECSSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhcCcEEEEECCCChHHHHHHHHHHHHHCCCCEEEEeCCccCccceEEEECCEECCHHHHHHHHHH
Confidence 455555544431 3678999999999999999999999999999976665 2333321110
Q ss_pred -----hccc-----CCC--------------CCCCCcEEEEEeccc-cccccCceecccEEEEecCChhhhhccC-CHHH
Q 020059 88 -----HCIA-----LPS--------------SKPKFQVAVVEVSSY-QMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKN 141 (331)
Q Consensus 88 -----~~~~-----~~~--------------~~~~~~~~VlE~~~~-~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~ 141 (331)
+.+. .+. .+.++|++|+|+|++ +++..+. ++|+++|||||+.||+++|| |+|+
T Consensus 102 ~~~~~~~ig~~~~~~~~t~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~p~vaviTnI~~DHld~~g~t~e~ 180 (428)
T 1jbw_A 102 VRAALERLQQQQADFNVTEFEFITALAYWYFRQRQVDVAVIEVGIGGDTDSTNV-ITPVVSVLTEVALDHQKLLGHTITA 180 (428)
T ss_dssp HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTSTTCS-CCCSEEEECCCCSCCHHHHCSSHHH
T ss_pred HHHHHHhhcccccCCCCCHHHHHHHHHHHHHHhCCCCEEEEecCCCcccccccc-CCCCEEEECcCcHhhhhhhCCCHHH
Confidence 0000 000 145789999999986 5666554 69999999999999999999 9999
Q ss_pred HHHHHHHhccccCCCceEEEeCCChhhHHHHhc----cCccEEEeccCCCccc-ccccccceEEEecCceeEEEEeecCC
Q 020059 142 YALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKI-DTEAKTASFEVPAVGVVSQLQLHNMK 216 (331)
Q Consensus 142 ~~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 216 (331)
|+++|+++++ +++.+|+|.||+....+... ...++.+||.+..... ........|.+...+... ..+.++
T Consensus 181 ia~~K~~i~~---~~~~~v~~~dd~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 255 (428)
T 1jbw_A 181 IAKHKAGIIK---RGIPVVTGNLVPDAAAVVAAKVATTGSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRI--SDLEVP 255 (428)
T ss_dssp HHHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTTEEEEEEEECSSSEEEEEEETTEEE--EEEEES
T ss_pred HHHHHhcccc---CCceEEEeCCCHHHHHHHHHHHHHcCCcEEEeCccceeeccccccCCceEEEecCCccc--cccccC
Confidence 9999999997 57889999999987665432 2446777774211100 000112234433322222 134789
Q ss_pred CCcHHHHHHHHHHHHHHHHHHc-C-----CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhcc
Q 020059 217 VMGRHNYHNAAVAALSVLGLDI-G-----VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDL 290 (331)
Q Consensus 217 l~G~~n~~NalaA~~~a~~~~l-g-----~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~ 290 (331)
++|.||++|+++|+ +++..+ | ++.+.|+++|++|+ +|||||++. .++..++|| +|||+|++++++.+
T Consensus 256 l~G~hn~~Na~aAi--a~~~~l~g~~~~~i~~~~i~~~L~~~~-~~gR~e~~~--~~~~viiD~--AhNp~s~~a~l~~l 328 (428)
T 1jbw_A 256 LVGDYQQRNMAIAI--QTAKVYAKQTEWPLTPQNIRQGLAASH-WPARLEKIS--DTPLIVIDG--AHNPDGINGLITAL 328 (428)
T ss_dssp CCSTHHHHHHHHHH--HHHHHHHHHTTCCCCHHHHHHHHHTCC-CTTSSEEEE--TTTTEEEEC--CCSHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH--HHHHHHhhccCCCCCHHHHHHHHHhCc-CCCceEEec--CCCcEEEEC--CcCHHHHHHHHHHH
Confidence 99999999999999 788888 9 99999999999999 799999995 356566653 78999999998887
Q ss_pred C---CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEEe
Q 020059 291 K---GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVIT 329 (331)
Q Consensus 291 ~---~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i~ 329 (331)
+ ++|+++|+|++.++ |+.++++.+.+ .+.+|+
T Consensus 329 ~~~~~~~~i~V~g~~~~k-------d~~~~~~~~~~~~d~vi~ 364 (428)
T 1jbw_A 329 KQLFSQPITVIAGILADK-------DYAAMADRLTAAFSTVYL 364 (428)
T ss_dssp HHHCSSCCEEEEECSSST-------THHHHHHHHHHHCSEEEE
T ss_pred HHhcCCCEEEEEeeCCCC-------CHHHHHHHHhhhCCEEEE
Confidence 4 36889999999765 78888888854 455544
No 15
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=100.00 E-value=2.8e-44 Score=343.36 Aligned_cols=278 Identities=17% Similarity=0.177 Sum_probs=196.5
Q ss_pred eeHHHHHHhhCC---CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeeccc------------Ccccchhhhhh-----
Q 020059 29 MSELDFAAQVIP---RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGN------------LGNPLSEAAFH----- 88 (331)
Q Consensus 29 l~~~~~~~~~~~---~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~------------~g~~~~~~~~~----- 88 (331)
+.++..+.+.+. ++.++|+||||||||||++||+++|++.|+++++.++ .|.|++...+.
T Consensus 35 l~~~~~~l~~lg~p~~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~vg~~~Sphl~~~neri~inG~~i~~~~~~~~~~~ 114 (442)
T 1o5z_A 35 LERISMLLSKLGNPHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHLSTFRERIRLNEEYISEEDVVKIYET 114 (442)
T ss_dssp SHHHHHHHHHTTCGGGSSEEEEEECSSSHHHHHHHHHHHHHHHTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhcCCEEEEECCcCHHHHHHHHHHHHHHCCCCEEEECCCCcCccceeEEECCEECCHHHHHHHHHH
Confidence 445544444331 3678999999999999999999999999999976654 25444332110
Q ss_pred ------c--------ccCC----------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHH
Q 020059 89 ------C--------IALP----------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNY 142 (331)
Q Consensus 89 ------~--------~~~~----------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~ 142 (331)
. .+.. +.+.++|++|+|+|. ++++.++. ++|+++|||||+.||+|+|| |+|+|
T Consensus 115 ~~~~~~~~~~~~~~~~T~~e~~t~~a~~~f~~~~~d~~VlEvg~~g~~d~t~~-~~P~vaViTnI~~DHld~~G~t~e~i 193 (442)
T 1o5z_A 115 MEPILNELDKEEIFSPSFFEVVTAMAFLYFAEKNVDIAVLEVGLGGRLDATNV-VFPLCSTIVTVDRDHEKTLGYTIEQI 193 (442)
T ss_dssp HHHHHHHHTTSTTTCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSSTTCGGGG-CCCSCEEECCCCC-------CCHHHH
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCcccccc-CCCCEEEECCccHhhhhhhCcCHHHH
Confidence 0 0000 013568999999994 56676554 79999999999999999999 99999
Q ss_pred HHHHHHhccccCCCceEEEeCCChhhHHHHhc----cCccEEEeccCCCccccc---ccccceEEEecCceeEEEEeecC
Q 020059 143 ALTKCHLFSHMVNTKLGLLPFGNQHLNEAIKG----HRFNLAWIGAFPGVKIDT---EAKTASFEVPAVGVVSQLQLHNM 215 (331)
Q Consensus 143 ~~~K~~i~~~~~~~~~~v~n~dd~~~~~~~~~----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l 215 (331)
+++|+++++ +++.+|+|.||+....+... ...++.+|+.+ +.... ......|.+...+ .+ ..+.+
T Consensus 194 a~~K~~i~~---~~~~~V~~~dd~~~~~~~~~~a~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l 265 (442)
T 1o5z_A 194 AWEKSGIIK---ERVPLVTGERKREALKVMEDVARKKSSRMYVIDKD--FSVKVKSLKLHENRFDYCGEN-TF--EDLVL 265 (442)
T ss_dssp HHHHGGGCC---TTCCEEECCCCHHHHHHHHHHHHHHTCCEEEBTTT--BEEEEEECCTTCEEEEEESSS-EE--EEEEE
T ss_pred HHHHHhhcc---CCccEEEcCCChHHHHHHHHHHHHcCCcEEEeCcc--eeeeccccccCCceEEEeccc-cc--ccccc
Confidence 999999997 57889999999987665432 24467777742 21110 0012233333221 11 13478
Q ss_pred CCCcHHHHHHHHHHHHHHHHH--HcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC--
Q 020059 216 KVMGRHNYHNAAVAALSVLGL--DIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK-- 291 (331)
Q Consensus 216 ~l~G~~n~~NalaA~~~a~~~--~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~-- 291 (331)
+++|.||++|+++|+ +++. .+|++.+.|+++|++|+ +|||||++. .++..+|+| +||||+|++++++.++
T Consensus 266 ~l~G~hn~~NalaAi--a~~~~~~lgi~~~~i~~~L~~~~-~~gR~e~~~--~~~~~viiD-~AhNp~s~~~~l~~l~~~ 339 (442)
T 1o5z_A 266 TMNGPHQIENAGVAL--KTLEATGLPLSEKAIREGLKNAK-NLGRFEILE--KNGKMYILD-GAHNPHGAESLVRSLKLY 339 (442)
T ss_dssp SSCSTHHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHHCC-CTTSSEEEE--ETTEEEEEC-CCCSHHHHHHHHHHHHHH
T ss_pred CCCcHhHHHHHHHHH--HHHHHhhcCCCHHHHHHHHHhCC-CCCceEEEE--cCCCeEEEE-CCcCHHHHHHHHHHHHHh
Confidence 999999999999999 8888 89999999999999999 699999995 332456666 5999999999988874
Q ss_pred --CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059 292 --GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI 328 (331)
Q Consensus 292 --~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i 328 (331)
.+|+++|+|++.++ |+.++++.+.+ .+.++
T Consensus 340 ~~~~~~i~V~g~~~dk-------d~~~~~~~l~~~~d~vi 372 (442)
T 1o5z_A 340 FNGEPLSLVIGILDDK-------NREDILRKYTGIFERVI 372 (442)
T ss_dssp CTTCCEEEEECCCTTS-------CHHHHHGGGTTTCSEEE
T ss_pred CCCCCEEEEEecCCCC-------CHHHHHHHHHhhCCEEE
Confidence 36899999998766 78888888855 45443
No 16
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=100.00 E-value=1.1e-44 Score=345.60 Aligned_cols=278 Identities=18% Similarity=0.150 Sum_probs=198.5
Q ss_pred eeeHHHHHHhhC---CCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhhc---
Q 020059 28 VMSELDFAAQVI---PRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFHC--- 89 (331)
Q Consensus 28 ~l~~~~~~~~~~---~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~~--- 89 (331)
-|.|+..+.+.+ .++.++||||||||||||++||+++|++.|+++++.++. |.+++...+..
T Consensus 34 gL~r~~~ll~~lg~p~~~~~vI~VtGTNGKgSt~~~l~~iL~~~G~~vg~~tSphl~~~neri~i~g~~i~~~~~~~~~~ 113 (437)
T 3nrs_A 34 GLERVKQVAERLDLLKPAPKIFTVAGTNGKGTTCCTLEAILLAAGLRVGVYSSPHLLRYTERVRIQGQELSEAEHSHSFA 113 (437)
T ss_dssp CCHHHHHHHHHTTCSCSSSEEEEEECSSSHHHHHHHHHHHHHHTTCCEEEECCCCSSCGGGGEEETTEECCHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCccccCCEEEEECCcChHHHHHHHHHHHHHCCCcEEEECCCCcCCcceEEEECCEECCHHHHHHHHH
Confidence 366777776655 246789999999999999999999999999999765552 22222111000
Q ss_pred ----c--cCC--------------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHH
Q 020059 90 ----I--ALP--------------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKC 147 (331)
Q Consensus 90 ----~--~~~--------------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~ 147 (331)
. ..+ +.+.++|++|+|+|+ |+++.++. ++|+++|||||+.||+++|| |+|+|+++|+
T Consensus 114 ~v~~~~~~~~~T~fe~~t~~a~~~f~~~~~d~~VlEvGlggrld~tni-i~p~vaVITnI~~DHld~lG~t~e~ia~~Ka 192 (437)
T 3nrs_A 114 QIEAGRGDISLTYFEFGTLSALQLFKQAKLDVVILEVGLGGRLDATNI-VDSDVAAITSIALDHTDWLGYDRESIGREKA 192 (437)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHTCCSEEEEECSSSSTTSGGGG-SCCSEEEECCCCCCBCCCTTCSHHHHHHHHG
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccc-cCCCEEEEcCccHHHHHHhCCcHHHHHHHHH
Confidence 0 000 114678999999995 56777654 78999999999999999999 9999999999
Q ss_pred HhccccCCCceEEEeCCChh--hHHHHhccCccEEEeccCCCcccc--------cccccceEEEecCceeEEEEeecCCC
Q 020059 148 HLFSHMVNTKLGLLPFGNQH--LNEAIKGHRFNLAWIGAFPGVKID--------TEAKTASFEVPAVGVVSQLQLHNMKV 217 (331)
Q Consensus 148 ~i~~~~~~~~~~v~n~dd~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l 217 (331)
+|++ +++.+|+|.||+. +...+.....++.++|.+.++... .+.....+.+...+. . ...+++
T Consensus 193 ~I~~---~~~~~V~~~d~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~l 265 (437)
T 3nrs_A 193 GVFR---GGKPAVVGEPDMPQSIADVAAELGAQLYRRDVAWKFSQQEPFDQQEPVDQQINGWHWQCGER--Q--LTGLPV 265 (437)
T ss_dssp GGCC---TTSEEEECCSSCCHHHHHHHHHHTCEEEEBTTTEEEEC--------------CCEEEEETTE--E--EEEECC
T ss_pred hhcc---CCCeEEECCccHHHHHHHHHHHcCCcEEEecccceeeecccccccccccccCceEEEecCCc--c--eeccCC
Confidence 9997 5788999988864 334444455677777754221111 000112233332221 1 123455
Q ss_pred C--cHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----
Q 020059 218 M--GRHNYHNAAVAALSVLGLDIGVDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK---- 291 (331)
Q Consensus 218 ~--G~~n~~NalaA~~~a~~~~lg~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~---- 291 (331)
+ |.||+.|+++|+ ++ ..+|++.+.|+++|++|+ .|||||++. .++ .+|+|+ ||||+|++++++.++
T Consensus 266 ~~~~~~Na~~Alaa~--~~-~~lgi~~~~i~~gL~~~~-~pGR~e~v~--~~~-~vi~D~-AHNp~a~~all~~l~~~~~ 337 (437)
T 3nrs_A 266 PNVPLANAATALAVL--HY-SELPLSDEAIRQGLQAAS-LPGRFQVVS--EQP-LLILDV-AHNPHAARYLVNRLAQVIN 337 (437)
T ss_dssp CSSCHHHHHHHHHHH--HH-HTCCCCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEECC-CCSHHHHHHHHHHHHHTC-
T ss_pred cchhHHHHHHHHHHH--HH-hCCCCCHHHHHHHHHhCC-CCCceEEEe--cCC-eEEEEC-CCCHHHHHHHHHHHHhhcc
Confidence 4 899999999887 55 568999999999999999 599999995 344 678885 999999999877664
Q ss_pred ------CCcEEEEEcCCCCCCCCccCCChhhhhhhhcc-eeEEE
Q 020059 292 ------GHKCVILLGGQAKVLNGQESNGFEKLIEPLNH-HRCVI 328 (331)
Q Consensus 292 ------~~~~i~V~G~~~~~g~~~~~~~~~~l~~~l~~-~~~~i 328 (331)
.+|+++|+|++.++ |++++++.+.+ .+.++
T Consensus 338 ~~~~~~~~r~i~V~G~~~dk-------d~~~~~~~l~~~~~~v~ 374 (437)
T 3nrs_A 338 PVNASKQGKVRAVVGMLSDK-------DIAGTLACLSERVDEWY 374 (437)
T ss_dssp -------CCEEEEECCBTTB-------CHHHHHHHHTTTCCEEE
T ss_pred hhhhcCCCCEEEEEeCCCCC-------CHHHHHHHHHhcCCEEE
Confidence 46899999988776 79999998864 34443
No 17
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=100.00 E-value=2.7e-43 Score=335.23 Aligned_cols=262 Identities=18% Similarity=0.136 Sum_probs=188.3
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccC------------cccchhhhhh-------c-c-cCC------
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNL------------GNPLSEAAFH-------C-I-ALP------ 93 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~------------g~~~~~~~~~-------~-~-~~~------ 93 (331)
++.++|+||||||||||++||+++|++.|+++++.++. |.+++...+. . . ..+
T Consensus 47 ~~~~vI~VTGTnGKtTT~~~l~~iL~~~G~~~g~~~s~~l~~~neri~i~g~~i~~~~~~~~~~~v~~~~~~~~~t~~e~ 126 (422)
T 1w78_A 47 PAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPESAHTASFAEIESARGDISLTYFEY 126 (422)
T ss_dssp CSSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEECCSCSSCGGGGEEETTEECCHHHHHHHHHHHHHHTTTCCCCHHHH
T ss_pred cCCcEEEEeCCcChHHHHHHHHHHHHHCCCCEEEECCCCcCcCceEEEECCEECCHHHHHHHHHHHHHHhccCCCChHHH
Confidence 56799999999999999999999999999998654442 1121111000 0 0 000
Q ss_pred --------CCCCCCcEEEEEecc-ccccccCceecccEEEEecCChhhhhccC-CHHHHHHHHHHhccccCCCceEEEeC
Q 020059 94 --------SSKPKFQVAVVEVSS-YQMEIPNKYFCPTVSVVLNLTPDHLERHK-TMKNYALTKCHLFSHMVNTKLGLLPF 163 (331)
Q Consensus 94 --------~~~~~~~~~VlE~~~-~~~~~~~~~~~p~i~viTni~~dHl~~~g-t~e~~~~~K~~i~~~~~~~~~~v~n~ 163 (331)
+.+.++|++|+|+|. ++++..+ .++|+++|||||+.||+|+|| |+|+|+++|+++++ +++.+|+|.
T Consensus 127 ~t~~a~~~~~~~~~d~~VlEvgl~~~~d~t~-~~~p~vaviTnI~~DHld~~g~t~e~ia~~K~~i~~---~~~~~v~~~ 202 (422)
T 1w78_A 127 GTLSALWLFKQAQLDVVILEVGLGGRLDATN-IVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFR---SEKPAIVGE 202 (422)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSTTSGGG-GSCCSEEEECCCCSCCHHHHCSSHHHHHHHHGGGCC---TTSEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCccccccc-CCCCCEEEECCcChhhhhhhCCCHHHHHHHHHhhcc---CCCcEEEcC
Confidence 013468999999995 5666554 479999999999999999999 99999999999997 577889998
Q ss_pred CChhh--HHHHhccCccEEEeccCCCcccccccccceEEEecCceeEEEEeecCCCCcHHHHHHHHHHHHHHHHHHc--C
Q 020059 164 GNQHL--NEAIKGHRFNLAWIGAFPGVKIDTEAKTASFEVPAVGVVSQLQLHNMKVMGRHNYHNAAVAALSVLGLDI--G 239 (331)
Q Consensus 164 dd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~n~~NalaA~~~a~~~~l--g 239 (331)
||+.. .........++.+||.+ +.+..+ ...+.+...+... ..++++ .||++|+++|+ +++..+ |
T Consensus 203 d~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~--~~~~~~~~~~~~~----~~l~l~-~hn~~Na~aAi--a~~~~~~~g 271 (422)
T 1w78_A 203 PEMPSTIADVAQEKGALLQRRGVE--WNYSVT--DHDWAFSDAHGTL----ENLPLP-LVPQPNAATAL--AALRASGLE 271 (422)
T ss_dssp SSCCHHHHHHHHHHTCEEEEBTTT--BEEEEC--SSCEEEEETTEEE----EEECCC-SSCHHHHHHHH--HHHHHHTCC
T ss_pred ccHHHHHHHHHHHcCCceEEeCcc--eeeecc--CceEEEecCCccc----ccCCch-HHHHHHHHHHH--HHHHHhCCC
Confidence 87642 22222234467777742 211111 1123332222211 357888 99999999999 777765 8
Q ss_pred CCHHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCChh
Q 020059 240 VDVEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNGFE 315 (331)
Q Consensus 240 ~~~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~~~ 315 (331)
++.+.|+++|++|+ +|||||++. .++ .+|+|+ ||||+|++++++.++ ++|+++|+|++.++ |++
T Consensus 272 i~~~~i~~~L~~~~-~~gR~e~~~--~~~-~~i~D~-Ahnp~s~~~~l~~l~~~~~~~~~i~V~g~~~~k-------d~~ 339 (422)
T 1w78_A 272 VSENAIRDGIASAI-LPGRFQIVS--ESP-RVIFDV-AHNPHAAEYLTGRMKALPKNGRVLAVIGMLHDK-------DIA 339 (422)
T ss_dssp CCHHHHHHHHHHCC-CTTSSEEEE--TTT-EEEEEC-CCSHHHHHHHHHHHHHSCSCSCEEEEECCBTTS-------CHH
T ss_pred CCHHHHHHHHHhCC-CCceEEEEe--CCC-eEEEEC-CCCHHHHHHHHHHHHHhCCCCCEEEEEeccCCC-------CHH
Confidence 99999999999999 599999995 344 566674 999999999977653 46899999998776 789
Q ss_pred hhhhhhcc-eeEEEe
Q 020059 316 KLIEPLNH-HRCVIT 329 (331)
Q Consensus 316 ~l~~~l~~-~~~~i~ 329 (331)
++++.+.+ .+.+++
T Consensus 340 ~~~~~l~~~~d~vi~ 354 (422)
T 1w78_A 340 GTLAWLKSVVDDWYC 354 (422)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHhhCCEEEE
Confidence 99988854 444443
No 18
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=99.14 E-value=6.3e-11 Score=97.27 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHHHHHHhhcCCCCCCceeEEeeecCcEEEEEcCCCCCHHHHHHHHhccC----CCcEEEEEcCCCCCCCCccCCC-hhh
Q 020059 242 VEALNSTIEILRTPPHRMQIVHRDIQGVTWVDDSKATNLEATCTGLMDLK----GHKCVILLGGQAKVLNGQESNG-FEK 316 (331)
Q Consensus 242 ~~~i~~~l~~~~~~~gR~e~~~~~~~~~~iidD~~a~np~s~~~al~~~~----~~~~i~V~G~~~~~g~~~~~~~-~~~ 316 (331)
.++|+++|++|++++||||++. ..++++|||| |||||++++++++.++ .+|+++|||...... ...+ +.+
T Consensus 11 ~~~i~~~L~~f~gv~~R~E~i~-~~~g~~vi~D-yaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~---r~k~~~~~ 85 (163)
T 3mvn_A 11 VDLGTENLYFQSNAQRRLEVKG-VVNNITVYDD-FAHHPTAITATIDALRAKVGQQRILAVLEPRSNTM---KMGVHKHE 85 (163)
T ss_dssp ----------------CCEEEE-EETTEEEEEE-CCCSHHHHHHHHHHHHHHHTTSCEEEEECCC------------CHH
T ss_pred HHHHHHHHHhCCCCCCCeEEEe-cCCCcEEEEc-CCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcch---hhHHHHHH
Confidence 4678999999999999999996 4678999999 6999999999887763 468888887542210 0112 356
Q ss_pred hhhhhcceeEEEe
Q 020059 317 LIEPLNHHRCVIT 329 (331)
Q Consensus 317 l~~~l~~~~~~i~ 329 (331)
+...+...+.+|+
T Consensus 86 ~~~~~~~aD~vi~ 98 (163)
T 3mvn_A 86 LATSLQDADSVFI 98 (163)
T ss_dssp HHHHHTTCSEEEE
T ss_pred HHHHHhcCCEEEE
Confidence 6666665665554
No 19
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=96.22 E-value=0.0012 Score=62.69 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=52.0
Q ss_pred eeeeeccccc-cCChHHHHHHHcCCee--eeHHHHHHhhCC---CCCc-EEEEeCCCChHhH-HHHHHHHHHhc
Q 020059 3 MLWLFLLEFQ-LKATGLACLLQSGKRV--MSELDFAAQVIP---RSIK-ILAVTGTNGKSTV-VTFVGQMLNHL 68 (331)
Q Consensus 3 ~~~~~~~~~~-~~~p~~~~a~~~g~~~--l~~~~~~~~~~~---~~~~-~I~VtGT~GKTTt-~~~l~~iL~~~ 68 (331)
+|||.++..+ .+++..+.|+++|+++ .+++++....++ .+.+ +|+|| |||||++ +.+|..-|++.
T Consensus 74 ~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIs-T~Gksp~la~~ir~~ie~~ 146 (457)
T 1pjq_A 74 WLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVS-SGGTSPVLARLLREKLESL 146 (457)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEE-CCCCChHHHHHHHHHHHHh
Confidence 5788888887 4778888999999998 788877665543 2344 99999 9999998 89999888865
No 20
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.43 E-value=0.04 Score=49.40 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.+.|+|+|+ |--|||||+.-|+..|.+.|+++.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllI 82 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 82 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEE
Confidence 477899999 56789999999999999999999753
No 21
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=93.44 E-value=0.082 Score=45.73 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=32.1
Q ss_pred HhhCCCCCcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeeec
Q 020059 36 AQVIPRSIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 36 ~~~~~~~~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.++..++++.|.||||. |||+++.-|...|++.|+++..+
T Consensus 19 ~~~~~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~f 61 (251)
T 3fgn_A 19 NLYFQSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVC 61 (251)
T ss_dssp ---CCSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHhcccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34444577899999987 99999999999999999998653
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.94 E-value=0.1 Score=42.86 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=28.3
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 43 ~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+++|+|+ |-.||||++..|+..|...|+++.+.
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlli 36 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVV 36 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 4688898 56789999999999999999998653
No 23
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.87 E-value=0.13 Score=41.64 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
++++|+|+|.. ||||+...|...|+..|++++..-
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 56899999975 999999999999999999885543
No 24
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=92.83 E-value=0.11 Score=44.11 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=30.6
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.+++.|.|||| .|||+++.-|.+.|++.|+++..+
T Consensus 2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 36788999998 599999999999999999998643
No 25
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=92.00 E-value=0.14 Score=42.93 Aligned_cols=31 Identities=29% Similarity=0.187 Sum_probs=27.2
Q ss_pred cEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|.|+++ .||||++.-|+..|.+.|+++.+
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 57888865 68999999999999999999865
No 26
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.39 E-value=0.49 Score=41.80 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=30.3
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
...++|.||++ .||||++.-|+..|.+.|+++.+.
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 46689999976 589999999999999999998654
No 27
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.26 E-value=0.31 Score=42.88 Aligned_cols=35 Identities=14% Similarity=0.218 Sum_probs=30.0
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.+.++|.||++ -||||++.-|+..|.+.|+++.+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 46789999865 589999999999999999998654
No 28
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=90.87 E-value=0.23 Score=42.03 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=28.7
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHhc-CCCeee
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHL-GIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~-g~~~~~ 74 (331)
+..++|+|+ |-.||||++..|+..|... |+++.+
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~Vll 39 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLA 39 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEE
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEE
Confidence 356889998 5678999999999999998 999864
No 29
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=90.85 E-value=0.4 Score=41.73 Aligned_cols=35 Identities=17% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+..++|.||++ -||||++.-|+..|.+.|+++.+.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 46789999965 699999999999999999998653
No 30
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=90.60 E-value=0.22 Score=42.78 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=29.1
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++.++|+|+++ .||||++..|+..|...|+++.+.
T Consensus 4 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli 41 (257)
T 1wcv_1 4 AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLV 41 (257)
T ss_dssp -CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEE
Confidence 35689999855 479999999999999999998653
No 31
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=90.56 E-value=0.46 Score=40.91 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=32.2
Q ss_pred HHHHhhCCCCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 33 DFAAQVIPRSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 33 ~~~~~~~~~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+...++. +..++|+|+++ .||||++.-|+..|...|+++.+.
T Consensus 9 ~~a~~l~-~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 9 EIKERLG-KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp HHHHHHT-TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhhhc-cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3344444 45679999855 579999999999999999998653
No 32
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=90.54 E-value=0.28 Score=41.29 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.2
Q ss_pred cEEEEeC---CCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
++|+|++ -.||||++..|+..|.+.|+++.+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 6788875 4589999999999999999998653
No 33
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=90.26 E-value=0.3 Score=41.88 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeec
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+..+.|.|||| .|||+++..|.+.|++.|++++.+
T Consensus 19 ~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~f 56 (242)
T 3qxc_A 19 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILL 56 (242)
T ss_dssp CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEE
Confidence 35689999999 699999999999999999998644
No 34
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=89.96 E-value=0.057 Score=47.34 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=44.7
Q ss_pred ceeeeeccccc-cCChHHHHHHHc---CCee--eeHHHHHHhhCC---CCCc--EEEEeCCCChHhHH-HHHHHHHHh
Q 020059 2 WMLWLFLLEFQ-LKATGLACLLQS---GKRV--MSELDFAAQVIP---RSIK--ILAVTGTNGKSTVV-TFVGQMLNH 67 (331)
Q Consensus 2 ~~~~~~~~~~~-~~~p~~~~a~~~---g~~~--l~~~~~~~~~~~---~~~~--~I~VtGT~GKTTt~-~~l~~iL~~ 67 (331)
+++||.++..+ .+++..+.|+++ ++++ ...++.....+| .+.+ +|+|| |||||++. ..|..-+.+
T Consensus 107 adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIS-T~Gksp~lA~~ir~~ie~ 183 (274)
T 1kyq_A 107 WYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILIS-TNGLSPRFGALVRDEIRN 183 (274)
T ss_dssp EEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEE-ESSSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEE-CCCCCcHHHHHHHHHHHH
Confidence 46777777765 455677788998 9888 777776654443 2334 99999 99998654 555555544
No 35
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.67 E-value=0.36 Score=42.56 Aligned_cols=34 Identities=29% Similarity=0.371 Sum_probs=28.6
Q ss_pred CCCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++.++|+|+ |-.||||++.-|+..|.+.|+++.+
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 467888888 5568999999999999999999854
No 36
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=89.32 E-value=0.4 Score=40.92 Aligned_cols=31 Identities=32% Similarity=0.448 Sum_probs=26.7
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.||||++..|+..|...|+++.+
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVV 36 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 678887 5568999999999999999999864
No 37
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.28 E-value=0.42 Score=42.78 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=29.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|+|+|.+ |||||+..|+..|...|.++.+.+
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45799999775 799999999999999898886544
No 38
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.26 E-value=0.38 Score=41.37 Aligned_cols=31 Identities=29% Similarity=0.362 Sum_probs=25.8
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|. |-.||||++..|+..|...|+++.+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll 34 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 455554 6679999999999999999999864
No 39
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.16 E-value=0.42 Score=41.72 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=26.7
Q ss_pred CcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+++|+|+ |-.||||++.-|+..|...|+++.+
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVll 35 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMI 35 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEE
Confidence 4566665 6689999999999999999999854
No 40
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=88.86 E-value=0.42 Score=41.77 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=27.3
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.||||++..|+..|...|+++.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~Vll 38 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAV 38 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 589998 5678999999999999999999864
No 41
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=88.80 E-value=0.38 Score=41.44 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=27.7
Q ss_pred CCCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++.++|+|++. .||||++..|+..|. .|+++.+
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~Vll 60 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLL 60 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEE
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEE
Confidence 46789999755 579999999999999 9999854
No 42
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.49 E-value=0.52 Score=41.89 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
...+|+|+|.+ |||||+..|+..+...|.++.+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45689999876 799999999999998888876544
No 43
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=87.58 E-value=0.9 Score=37.29 Aligned_cols=34 Identities=29% Similarity=0.459 Sum_probs=27.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+..+|+|+|.+ ||||++.+|...|...|..+..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 456799999987 8999999999999877665533
No 44
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=87.34 E-value=0.64 Score=39.78 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=26.3
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
++|+|+ |-.||||++..|+..|...|+++.+
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~Vll 36 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTI 36 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEE
Confidence 577776 4568999999999999999999864
No 45
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=86.73 E-value=0.66 Score=38.48 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=24.9
Q ss_pred EEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 45 ILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 45 ~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+|+|+ |-.||||++..|+..|...| ++.+
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~Vll 33 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLL 33 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEE
Confidence 56666 67799999999999999999 8854
No 46
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=86.59 E-value=0.65 Score=42.36 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCcEEEEeC---CCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 41 RSIKILAVTG---TNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 41 ~~~~~I~VtG---T~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
++.++|+|++ -.||||++.-|+..|...|+++.+..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4678999985 55899999999999999999986543
No 47
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.29 E-value=0.33 Score=42.58 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.0
Q ss_pred eCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 49 TGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
-|-.||||++..|+..|...|+++.+
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVll 70 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLM 70 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEE
Confidence 35689999999999999999999864
No 48
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=85.46 E-value=0.45 Score=43.30 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=27.3
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+++|+|+ |-.||||++.-|+..|...|+++.+
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLl 35 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLY 35 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEE
Confidence 4678887 5568999999999999999999864
No 49
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.84 E-value=0.97 Score=39.86 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=27.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh-cCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~-~g~~~~~~g 76 (331)
+..+|+++|.| |||||+..|+..+.. .|+++.+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45577777654 899999999999985 898876544
No 50
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=84.73 E-value=1.1 Score=40.60 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+..++|.|+ |-.||||++.-++..|...|+++.+...
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 62 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVST 62 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 466778887 6678999999999999999999866543
No 51
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=84.69 E-value=0.94 Score=40.93 Aligned_cols=108 Identities=11% Similarity=0.016 Sum_probs=61.5
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhcCCCeeeccc---------Ccccchhhhhhcc------cCCCCCCCCcEEE
Q 020059 42 SIKILAVTGT---NGKSTVVTFVGQMLNHLGIEAFVGGN---------LGNPLSEAAFHCI------ALPSSKPKFQVAV 103 (331)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~g~~~~~~g~---------~g~~~~~~~~~~~------~~~~~~~~~~~~V 103 (331)
+.+.|.|+|| -|||+|+..|.+.|++.|++++..++ .|.|......+.. ......+++|+.+
T Consensus 151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqtg~~~~~~gi~~Dav~~df~aG~ve~~~~~~~~~~d~vl 230 (349)
T 2obn_A 151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQTGVMLEGDGVALDAVRVDFAAGAVEQMVMRYGKNYDILH 230 (349)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHSCSCCGGGSBHHHHHHHHHHHHHHHTTTCSEEE
T ss_pred cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccchhhhhhcCCcchhHHHHHHHhhhHHHHHHHhccCCCEEE
Confidence 3678999998 49999999999999999999865332 2233321111100 0001134678899
Q ss_pred EEeccc---cccccC--c--eeccc-EEEEecCChhhhhcc-----CCHHHHHHHHHHh
Q 020059 104 VEVSSY---QMEIPN--K--YFCPT-VSVVLNLTPDHLERH-----KTMKNYALTKCHL 149 (331)
Q Consensus 104 lE~~~~---~~~~~~--~--~~~p~-i~viTni~~dHl~~~-----gt~e~~~~~K~~i 149 (331)
+|-..+ ...... . -.+|+ +.+....+.-|++.| .++++....-..+
T Consensus 231 VEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~p~l~~~i~t~e~l 289 (349)
T 2obn_A 231 IEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPIPPLPEVIRLYETV 289 (349)
T ss_dssp ECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBCCCHHHHHHHHHHH
T ss_pred EeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCCCCHHHHHHHHHHH
Confidence 996532 221000 0 13666 566666666666333 2555555544443
No 52
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.16 E-value=1.5 Score=36.19 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=26.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
++..+|+|.|-| ||||+..+|..++...|..+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~ 53 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPA 53 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence 466799999987 89999999999998655444
No 53
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=83.81 E-value=1.5 Score=35.44 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+++++|+|. .||||+...|...|...|++++.
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~ 39 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGL 39 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeE
Confidence 3679999998 48999999999989888888754
No 54
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=83.67 E-value=1.1 Score=41.83 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=29.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|.++|.+ |||||+..|+..|+..|.++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35689999865 599999999999999999986533
No 55
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.11 E-value=0.95 Score=39.76 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=24.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~ 71 (331)
+..+|+|||.. ||||++.+|...|...|.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~ 35 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVK 35 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 45799999985 8999999999998765543
No 56
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=83.04 E-value=1.2 Score=40.26 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=62.8
Q ss_pred CCcEEEEeCCC---ChHhHHHHHHHHHHhcCCCeeeccc----------Ccccchhhhhh-------cccCCCCCCCCcE
Q 020059 42 SIKILAVTGTN---GKSTVVTFVGQMLNHLGIEAFVGGN----------LGNPLSEAAFH-------CIALPSSKPKFQV 101 (331)
Q Consensus 42 ~~~~I~VtGT~---GKTTt~~~l~~iL~~~g~~~~~~g~----------~g~~~~~~~~~-------~~~~~~~~~~~~~ 101 (331)
+.+.|.|+||. |||+|+..|.+.|++.|++++..++ .|.++.....+ .........+.|+
T Consensus 168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqtg~li~~~~gv~~D~~~~~~~ag~~e~~i~~~~~~~~D~ 247 (350)
T 2g0t_A 168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEI 247 (350)
T ss_dssp CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHHHHHTTCSEECCGGGSBGGGHHHHHHHHHHHHHHTTCSE
T ss_pred cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCceeeeeccCCCCCCCceecchhhHHHHhhHHHhhhcCCCE
Confidence 46789999985 9999999999999999999865332 22222211111 0000000346788
Q ss_pred EEEEeccccccc---c----Cc--eecccEEEEec-CChhhhhcc------CCHHHHHHHHHHh
Q 020059 102 AVVEVSSYQMEI---P----NK--YFCPTVSVVLN-LTPDHLERH------KTMKNYALTKCHL 149 (331)
Q Consensus 102 ~VlE~~~~~~~~---~----~~--~~~p~i~viTn-i~~dHl~~~------gt~e~~~~~K~~i 149 (331)
.++|-. +++-. . .. -.+|+..|+.. -++.|++.| +++++..+.-..+
T Consensus 248 ivVEGq-Ggl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~~~~~~i~~~i~~ie~l 310 (350)
T 2g0t_A 248 VFVEGQ-GALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETL 310 (350)
T ss_dssp EEEECC-SCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTSSCCCCHHHHHHHHHHS
T ss_pred EEEccC-eeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcccCCcCHHHHHHHHHHh
Confidence 999977 32210 0 01 14788888865 555555444 5666655544433
No 57
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=82.64 E-value=1.5 Score=38.72 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..++++.|-| ||||+...|+..++..+.++.+.|
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45688888877 899999999999998777775554
No 58
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=82.35 E-value=1.3 Score=39.45 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.6
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
++|.|+ |-.||||++.-++..|.+.|+++.+...
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 677777 7788999999999999999999865443
No 59
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=82.26 E-value=0.82 Score=42.09 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=22.2
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHH------hcCCCeee
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLN------HLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~------~~g~~~~~ 74 (331)
.+.++|+|+ |-.||||++..|+..|. ..|+++.+
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVll 151 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILV 151 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEE
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 467899999 66799999999999998 56777643
No 60
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.00 E-value=1.4 Score=40.30 Aligned_cols=34 Identities=9% Similarity=0.199 Sum_probs=27.8
Q ss_pred CCCcEEEEe---CCCChHhHHHHHHHHHHh------cCCCeee
Q 020059 41 RSIKILAVT---GTNGKSTVVTFVGQMLNH------LGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~Vt---GT~GKTTt~~~l~~iL~~------~g~~~~~ 74 (331)
...++|+|+ |-.||||++..|++.|.. .|+++.+
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVll 148 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILV 148 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEE
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEE
Confidence 357899999 667899999999999984 5777744
No 61
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=81.44 E-value=1.4 Score=39.48 Aligned_cols=33 Identities=12% Similarity=0.102 Sum_probs=27.0
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeecc
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+.|.|+ |-.||||++..|+..|.+.|+++.+..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 445555 678999999999999999999986543
No 62
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.08 E-value=1.5 Score=35.31 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=24.3
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.|+++|. .||||.+.+|+..|...|+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5888885 6899999999999998888764
No 63
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=80.90 E-value=1.4 Score=35.50 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=26.7
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+++++|+|.+ ||||+..+|...+...|++++.
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~ 35 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAV 35 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEE
Confidence 3689999975 7999999999999998887743
No 64
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=80.58 E-value=2 Score=34.28 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=25.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+|+++|.+ ||||++.+|+..|...|+.+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~ 36 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPC 36 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcE
Confidence 45688899875 89999999999998777654
No 65
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.34 E-value=2 Score=38.44 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=28.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|++.|-| |||||...|+..++..+.++.+.|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45688888876 699999999999999887776544
No 66
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=79.81 E-value=2.1 Score=38.87 Aligned_cols=35 Identities=20% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
...+|++.|-| |||||...|+..++..+.++.+.|
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 45688888877 899999999999998777775544
No 67
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=79.80 E-value=1.9 Score=40.37 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=28.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
.++|.++|.+ |||||+.-|+..|...|+++.+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5688888765 799999999999999999986543
No 68
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=79.61 E-value=1.9 Score=35.26 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=26.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+|.|+|. .||||.+.+|+.-|...|+.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4568899986 799999999999998888765
No 69
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=78.88 E-value=1.8 Score=34.59 Aligned_cols=29 Identities=48% Similarity=0.601 Sum_probs=24.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+.|.|+|. .||||.+..|+.-|...|+.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~ 32 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINN 32 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceE
Confidence 46777776 699999999999998877665
No 70
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=78.31 E-value=1.7 Score=36.79 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+|+|+|-| ||||++.+|...|
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999987 7999999999988
No 71
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=77.99 E-value=2.6 Score=36.37 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=31.0
Q ss_pred CCCcEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..+|.|.||| +-||+-|++-|..+|+++|+++..
T Consensus 21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~ 58 (295)
T 2vo1_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (295)
T ss_dssp CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCccee
Confidence 4789999999 689999999999999999999854
No 72
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.79 E-value=2.3 Score=34.03 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=23.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+|+++|. .||||.+.+|+.-|...|..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i 32 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVS 32 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 5777776 5899999999999988787653
No 73
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.62 E-value=3.7 Score=33.34 Aligned_cols=31 Identities=35% Similarity=0.377 Sum_probs=26.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCC
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~ 71 (331)
.+..+|+|+|- .||||+..+|+..|...|..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 46789999997 57999999999999876754
No 74
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.52 E-value=1.6 Score=35.77 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=21.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+..+|+|+|-| ||||+..+|...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55799999986 69999999999886
No 75
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=77.49 E-value=2.7 Score=39.86 Aligned_cols=34 Identities=18% Similarity=0.378 Sum_probs=28.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+..+|+|.|-| ||||+...|..+++..+.++.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 45688888887 79999999999999877777654
No 76
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=77.01 E-value=2.3 Score=34.74 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+|.|+|. .||||.+.+|+.-|...++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 3468899986 699999999999998877765
No 77
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=76.37 E-value=3.1 Score=36.77 Aligned_cols=35 Identities=26% Similarity=0.492 Sum_probs=28.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|+|.|-| ||||+...|+..++..+.++.+.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34688888776 699999999999998777775544
No 78
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=75.37 E-value=2.5 Score=38.26 Aligned_cols=34 Identities=12% Similarity=0.079 Sum_probs=27.5
Q ss_pred CcEEEEe---CCCChHhHHHHHHHHHH--hcCCCeeecc
Q 020059 43 IKILAVT---GTNGKSTVVTFVGQMLN--HLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~Vt---GT~GKTTt~~~l~~iL~--~~g~~~~~~g 76 (331)
.++|.|+ |-.||||++.-|+..|. +.|+++.+..
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3455555 77899999999999999 9999986544
No 79
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.12 E-value=2.3 Score=33.40 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=20.0
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.++.+|+++|. .||||++.+|+.-|.
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36789999987 689999999988773
No 80
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.80 E-value=2.8 Score=36.73 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.5
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcC
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g 69 (331)
.+..+|+|+|. .||||++.+|...|...|
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g 59 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKY 59 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 45679999996 589999999999998654
No 81
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=74.29 E-value=2.7 Score=37.63 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.3
Q ss_pred cEEEEe--CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 44 KILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 44 ~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
+++.++ |-.||||++.-++..|...|+++.+...
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 444343 7789999999999999999999876554
No 82
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.11 E-value=3.9 Score=32.66 Aligned_cols=31 Identities=26% Similarity=0.394 Sum_probs=26.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+..+|.++|. .||||.+..|+..|...|.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 5578999987 689999999999999887665
No 83
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.75 E-value=3.8 Score=35.95 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=28.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
+..+|+|+|- .||||++..|+..+...|.++.+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3468888875 5799999999999998888876544
No 84
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=73.56 E-value=1.3 Score=37.14 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=23.9
Q ss_pred EEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 46 LAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 46 I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
|+|+ |-.||||++.-|+..|...|+++.+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vll 33 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYA 33 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4444 5667999999999999999998854
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=73.54 E-value=2.6 Score=34.40 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEeCCCC--hHhHHHHHHHHHHhcC
Q 020059 45 ILAVTGTNG--KSTVVTFVGQMLNHLG 69 (331)
Q Consensus 45 ~I~VtGT~G--KTTt~~~l~~iL~~~g 69 (331)
+++++|-|| |||+..+|...++..|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 567777765 9999999999998767
No 86
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=73.21 E-value=3.8 Score=38.13 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCcEEEEeC--CCChHhHHHHHHHHHHhc-CCCeee
Q 020059 42 SIKILAVTG--TNGKSTVVTFVGQMLNHL-GIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtG--T~GKTTt~~~l~~iL~~~-g~~~~~ 74 (331)
+.++|.|+| -.|||||+.-|+..|... |+++.+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVll 134 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLV 134 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 346787775 468999999999999998 999864
No 87
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=73.16 E-value=3 Score=37.00 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=24.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
.+..+|+|.|.| ||||+..+|..++...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 466799999987 8999999999999853
No 88
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=72.89 E-value=1.9 Score=35.06 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.3
Q ss_pred cEEEEeCCC--ChHhHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQ 63 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~ 63 (331)
.+|+|+|.+ ||||++.+|+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 478999875 89999999988
No 89
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=71.96 E-value=4.9 Score=35.77 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+..+|+|+|.+ ||||++..|..+|..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34599999976 799999999999974
No 90
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=71.45 E-value=2.8 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=20.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+..+|+++|-| ||||+..+|...+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999987 7999999998875
No 91
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=70.58 E-value=2.9 Score=36.87 Aligned_cols=26 Identities=31% Similarity=0.494 Sum_probs=22.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+|+|+|.| ||||+..+|..++.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356799999987 69999999999986
No 92
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=70.34 E-value=3.2 Score=33.93 Aligned_cols=28 Identities=32% Similarity=0.487 Sum_probs=22.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+-.+|++||- .||||++.+|+..| |..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g~~v 40 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---GAHV 40 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---CCEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---CCEE
Confidence 5579999987 59999999998865 5544
No 93
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=70.31 E-value=4.5 Score=36.16 Aligned_cols=34 Identities=38% Similarity=0.459 Sum_probs=28.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+.++|+++|.+ ||||+...|...+...|.++.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 467899999886 7999999999999888877654
No 94
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=70.25 E-value=5 Score=36.15 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCcEEEEe--CCCChHhHHHHHHHHHH--hcCCCeeeccc
Q 020059 42 SIKILAVT--GTNGKSTVVTFVGQMLN--HLGIEAFVGGN 77 (331)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~--~~g~~~~~~g~ 77 (331)
..+++.++ |-.||||++..++..|. ..|+++.+...
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34566665 66789999999999999 89999876554
No 95
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=69.93 E-value=4.5 Score=35.55 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=27.6
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
..+|+++|- .||||++..|+..+...|.++.+.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458888865 4799999999999999998876543
No 96
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=69.73 E-value=3 Score=35.40 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=21.0
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
+..+|+|||. .||||++.+|+..|.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999997 599999999988764
No 97
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=68.92 E-value=3.8 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
++|.|+|. .||||++.+|+..|.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57889987 579999999987763
No 98
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=68.79 E-value=3.1 Score=33.84 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=19.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
.+|+++|.+ ||||++.+|+. .|..+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~----lg~~~ 29 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD----LGVPL 29 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT----TTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHH----CCCcc
Confidence 579999985 89999999976 36554
No 99
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=68.37 E-value=3.8 Score=33.16 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
++|+|+|. .||||++.+|+..|.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 38999997 599999999988773
No 100
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=67.94 E-value=6.1 Score=33.92 Aligned_cols=34 Identities=32% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCcEEEEeCC----CChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGT----NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT----~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..+|.|.|||- -||+-|++-|..+|++.|+++..
T Consensus 21 ~~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~ 58 (294)
T 2c5m_A 21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTS 58 (294)
T ss_dssp CCCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEEC
T ss_pred eceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEE
Confidence 46899999984 59999999999999999999843
No 101
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=67.47 E-value=4.7 Score=33.21 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.3
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
..+|+|+|.+ ||||++.+|+..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999985 6999999998876
No 102
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.40 E-value=4.7 Score=32.73 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=20.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
...+|+|+|-+ ||||++.+|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 46799999976 6999999999887
No 103
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=66.75 E-value=6.9 Score=34.94 Aligned_cols=36 Identities=28% Similarity=0.364 Sum_probs=29.3
Q ss_pred CCCcEEEEeCCCC--hHhHHHHHHHHHHhcCCCeeecc
Q 020059 41 RSIKILAVTGTNG--KSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~~l~~iL~~~g~~~~~~g 76 (331)
.+..+++|+|.+| |||+...|...+...+.++.+.|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4678999999986 99999999999987766665443
No 104
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=66.35 E-value=9.3 Score=31.19 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=26.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHH-hcCCCe
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLN-HLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~-~~g~~~ 72 (331)
....+|.++|. .||||.+.+|+..|. ..|+.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~ 57 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHA 57 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcE
Confidence 35678999986 689999999999998 677554
No 105
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.42 E-value=6.6 Score=36.40 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=27.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeecc
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
..+|+++|- .||||++..|+..|...|.++.+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 457888765 4899999999999999898876543
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=65.39 E-value=5 Score=32.22 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEeCCCC--hHhHHHHHHHHHH
Q 020059 45 ILAVTGTNG--KSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT~G--KTTt~~~l~~iL~ 66 (331)
.++++|-|| |||+..+|...+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999987 9999999999985
No 107
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=65.16 E-value=7 Score=36.91 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=41.8
Q ss_pred ChHHHHHHHcCCee--ee---------HHHHHHhhC-CCCCcEEEEeCC------CChHhHHHHHHHHHHhcCCCeee
Q 020059 15 ATGLACLLQSGKRV--MS---------ELDFAAQVI-PRSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 15 ~p~~~~a~~~g~~~--l~---------~~~~~~~~~-~~~~~~I~VtGT------~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.|.-+-|.+.|++- +. .+..+.++- .++.++|.||.+ -|||||+.=|+..|.+.|+++.+
T Consensus 17 ~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~~GkkVLL 94 (557)
T 3pzx_A 17 KPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMV 94 (557)
T ss_dssp CCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHHcCCeEEE
Confidence 35556677777652 11 123343432 246789999977 47999999999999999999854
No 108
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=64.66 E-value=3.6 Score=34.26 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=16.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHH-HHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVG-QMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~-~iL~ 66 (331)
...+|+++|-| ||||+..+|. ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45799999998 6999999998 7763
No 109
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=64.04 E-value=3.4 Score=33.18 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.9
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
++++++|-| ||||+..+|...+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 468888877 699999999988863
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=63.97 E-value=9.8 Score=30.96 Aligned_cols=34 Identities=15% Similarity=-0.062 Sum_probs=22.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.+++.++|. .||||...-+.+-+..+|+++.+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4579999999 566555555555555678887543
No 111
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=63.85 E-value=7.8 Score=34.81 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.+.++|+|+|. .||||+..-|...|...|+++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~v 112 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAV 112 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEE
Confidence 45679999985 57999999999999988988754
No 112
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=63.83 E-value=5.5 Score=33.11 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.++..||+||. .||||++.+++. .|..+
T Consensus 7 ~~~~~iglTGgigsGKStv~~~l~~----~g~~v 36 (210)
T 4i1u_A 7 HHMYAIGLTGGIGSGKTTVADLFAA----RGASL 36 (210)
T ss_dssp CSCCEEEEECCTTSCHHHHHHHHHH----TTCEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHH----CCCcE
Confidence 46789999997 689999998876 46654
No 113
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=63.46 E-value=7.5 Score=36.90 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=27.1
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.++|+|+|. .|||||+.-|+..|...|+++.+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3558888876 579999999999999999987543
No 114
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=63.07 E-value=8.4 Score=32.43 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+..++.++ |-.||||++.-|+..|. .|+++.+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 34555555 67899999999999999 89887543
No 115
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=63.02 E-value=8.8 Score=37.05 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=27.0
Q ss_pred CCcEEEEe--CCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVT--GTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~Vt--GT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
..+++.++ |-.||||++..++..|.+.|+++.+
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLl 41 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLL 41 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEE
Confidence 34566665 5589999999999999999999865
No 116
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=62.80 E-value=21 Score=27.93 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH-hcCCCe
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN-HLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~-~~g~~~ 72 (331)
+...+.+.|.+ ||||+...+...+. ..|..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~ 70 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG 70 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE
Confidence 45788999865 69999999999987 667654
No 117
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.67 E-value=4.2 Score=32.89 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+..+|+++|.+ ||||++.+|...+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999986 7999999998776
No 118
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=62.67 E-value=4.2 Score=31.87 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=19.2
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+|+++|.+ ||||+..+|+..|.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899875 89999999988763
No 119
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.66 E-value=5.2 Score=32.19 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=22.1
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.+..+|+|+|. .||||++.+|+.. |..+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~----g~~~ 35 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW----GYPV 35 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT----TCCE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC----CCEE
Confidence 45678999986 5899999998874 6655
No 120
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=62.58 E-value=7.4 Score=30.80 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=22.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCC
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~ 70 (331)
.+|.|+|. .||||.+..|+.-|...|.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~ 32 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGV 32 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCc
Confidence 57888886 6999999999999987663
No 121
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=62.47 E-value=7.1 Score=31.51 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.8
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcC
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g 69 (331)
...|.|+|. .||||.+..|+.-|...|
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 367889985 799999999999987665
No 122
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=62.42 E-value=5.2 Score=31.24 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
++|.++|. .||||.+.+|+.-|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46888886 699999999998773
No 123
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=61.41 E-value=8 Score=33.14 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
....+++|+|-| ||||+..+|...+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 366799999987 8999999999988753
No 124
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=60.27 E-value=9.7 Score=32.38 Aligned_cols=32 Identities=28% Similarity=0.448 Sum_probs=25.7
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+++.|.++|. .||||.+..|+.-|...|+.+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 4567777774 5999999999999988887654
No 125
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=59.88 E-value=5.1 Score=36.50 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=24.2
Q ss_pred CCCChHhHHHHHHHHHHhcCCCeeeccc
Q 020059 50 GTNGKSTVVTFVGQMLNHLGIEAFVGGN 77 (331)
Q Consensus 50 GT~GKTTt~~~l~~iL~~~g~~~~~~g~ 77 (331)
|-.||||++..++..|...|+++.+...
T Consensus 11 GG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 5568999999999999999999876655
No 126
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=59.69 E-value=11 Score=30.85 Aligned_cols=35 Identities=17% Similarity=-0.013 Sum_probs=26.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
...+++|+|.| ||||+...+...+...+.++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 55799999986 599999999977666555654443
No 127
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=59.68 E-value=6.6 Score=32.05 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred CChHhHHHHHHHHHHhcCCCeee
Q 020059 52 NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 52 ~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.||||-+.+|+.-|++.|+++..
T Consensus 11 sGKsTq~~~L~~~L~~~g~~v~~ 33 (197)
T 3hjn_A 11 SGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp SSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHHHHHCCCcEEE
Confidence 69999999999999999988754
No 128
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=58.25 E-value=7.9 Score=30.04 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEeCC--CChHhHHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.|.|+|. .||||.+.+|+.-|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 5778886 699999999998763
No 129
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.15 E-value=8.1 Score=31.59 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+.++|+|+|-+ ||||+..+|...+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456799999987 69999999887654
No 130
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=57.66 E-value=12 Score=31.04 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=26.6
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~ 73 (331)
...|.+.|.. ||||.+..|..-|...|+++.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 4688888865 799999999999999998774
No 131
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=57.61 E-value=11 Score=31.22 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=23.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHhcCC
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNHLGI 70 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~~g~ 70 (331)
.+.|.+.|.. ||||.+..|..-|+..|+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 3577777765 699999999999999997
No 132
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=57.54 E-value=6.6 Score=34.81 Aligned_cols=28 Identities=21% Similarity=0.579 Sum_probs=24.7
Q ss_pred CCcEEEE----eCCCChHhHHHHHHHHHHhcC
Q 020059 42 SIKILAV----TGTNGKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 42 ~~~~I~V----tGT~GKTTt~~~l~~iL~~~g 69 (331)
..|+|.| .|-.|||-++.+|...|+..+
T Consensus 35 ~vPVI~VGNitvGGTGKTP~vi~L~~~L~~~~ 66 (315)
T 4ehx_A 35 PVPVISVGNLSVGGSGKTSFVMYLADLLKDKR 66 (315)
T ss_dssp SSCEEEEEESBSSCCSHHHHHHHHHHHTTTSC
T ss_pred CCCEEEECCEEeCCCChHHHHHHHHHHHhhcC
Confidence 5789998 599999999999999998654
No 133
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=57.09 E-value=8.3 Score=30.73 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
+.+.|.++|.. ||||++.+|+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999975 699999999876
No 134
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=57.05 E-value=14 Score=33.16 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=28.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
...+|+|+|.+ ||||+...|...+...+.++.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 36899999986 699999999998888777765433
No 135
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=56.65 E-value=9.6 Score=31.77 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+|+|+|.+ ||||++.+|+..|
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999976 7999999998866
No 136
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=56.50 E-value=7.1 Score=31.70 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.2
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
....+|+|+|. .||||++.+|...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35679999995 67999999987755
No 137
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=56.16 E-value=6.9 Score=31.02 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.3
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
++|.++|. .||||++.+|+.-|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 35888885 79999999998876
No 138
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=55.62 E-value=10 Score=30.60 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+.+.|.++|.. ||||++..|+..|
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45688888875 8999999999877
No 139
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=55.60 E-value=8.1 Score=30.56 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.++|.++|. .||||.+.+|+.-|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899987 58999999998866
No 140
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.01 E-value=8.6 Score=31.02 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
..++|.|+|-+ ||||++..|+..|
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999975 7999999998877
No 141
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.85 E-value=11 Score=29.56 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=20.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
...+|+++|. .||||+..+|...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4578999997 57999999998876
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=54.21 E-value=8.4 Score=31.38 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||+..+|..++.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 467899999988 79999999998875
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=54.15 E-value=9.9 Score=30.23 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=19.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+.++|.++|. .||||.+.+|+.-|
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568888876 58999999998876
No 144
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=53.76 E-value=11 Score=31.43 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~ 73 (331)
....|.+.|-. ||||.+.+|...|.. |..+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 56788999874 799999999999988 76653
No 145
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=53.74 E-value=10 Score=31.00 Aligned_cols=21 Identities=43% Similarity=0.452 Sum_probs=18.0
Q ss_pred CcEEEEeCCC--ChHhHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQ 63 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~ 63 (331)
..+|+|+|.. ||||++.+|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 4689999975 89999999976
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=53.08 E-value=18 Score=30.24 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=23.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+..++.+||. .||||...-+.+-+..+|.++.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 5679999999 56666666555556667877754
No 147
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=52.98 E-value=8.4 Score=35.77 Aligned_cols=32 Identities=16% Similarity=0.385 Sum_probs=26.2
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
.+|.|+|- .||||++.-|+..+...|+++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv 133 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI 133 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 47777764 589999999999999989888643
No 148
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=52.77 E-value=8.8 Score=31.12 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=19.2
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+.++|.|-| ||||+..+|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4577888876 89999999988774
No 149
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=52.55 E-value=14 Score=32.62 Aligned_cols=58 Identities=9% Similarity=0.062 Sum_probs=36.6
Q ss_pred eeeeccccccCChHHHHHHHcCCeeeeH-------HHHH----HhhCC-----------CCCcEEEEeCCC--ChHhHHH
Q 020059 4 LWLFLLEFQLKATGLACLLQSGKRVMSE-------LDFA----AQVIP-----------RSIKILAVTGTN--GKSTVVT 59 (331)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~~-------~~~~----~~~~~-----------~~~~~I~VtGT~--GKTTt~~ 59 (331)
.+|++.+..+....++.|.+.++|++.- +..+ ...+. -....|.++|.+ ||||++.
T Consensus 83 ~IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 83 AIIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CEEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 3577777777667788899999999851 1111 11110 125678888876 5877765
Q ss_pred HH
Q 020059 60 FV 61 (331)
Q Consensus 60 ~l 61 (331)
.+
T Consensus 163 ~l 164 (314)
T 1ko7_A 163 EL 164 (314)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 150
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=52.21 E-value=9.1 Score=33.08 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQ 63 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~ 63 (331)
+..+|+|||.. ||||++.+|+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999974 89999999984
No 151
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=51.83 E-value=13 Score=30.99 Aligned_cols=34 Identities=21% Similarity=0.440 Sum_probs=28.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHh-cCCCeee
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNH-LGIEAFV 74 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~-~g~~~~~ 74 (331)
.+...|.+.|.. ||||.+..|..-|.. .|+++..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 356789999865 699999999999999 8877643
No 152
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=51.26 E-value=11 Score=31.96 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+|+|+|-+ ||||+..+|+.-|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999976 6999999998666
No 153
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=51.19 E-value=18 Score=34.44 Aligned_cols=32 Identities=34% Similarity=0.517 Sum_probs=28.3
Q ss_pred CcEEEEeC----CCChHhHHHHHHHHHHhcCCCeee
Q 020059 43 IKILAVTG----TNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 43 ~~~I~VtG----T~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
.|.|.||| +=||+-|++-|..+|++.|+++..
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~ 38 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTA 38 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 57899998 459999999999999999999854
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=51.05 E-value=11 Score=29.91 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
..++++|.|-+ ||||+..+|...+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999976 69999999887654
No 155
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=50.55 E-value=18 Score=34.04 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCcEEEEeCC------CChHhHHHHHHHHHHhcCCCee
Q 020059 41 RSIKILAVTGT------NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 41 ~~~~~I~VtGT------~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++.+.|-||+- -|||||+-=|.+.|...|+++.
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~ 79 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSI 79 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeE
Confidence 36789999998 6999999999999999999874
No 156
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=50.28 E-value=7.6 Score=31.94 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=16.0
Q ss_pred EEEEeCCCChHhHHHHHHHHHHh
Q 020059 45 ILAVTGTNGKSTVVTFVGQMLNH 67 (331)
Q Consensus 45 ~I~VtGT~GKTTt~~~l~~iL~~ 67 (331)
++|..|| ||||.+..|+.-|..
T Consensus 10 l~G~~Gs-GKsT~~~~La~~l~~ 31 (222)
T 1zak_A 10 ISGAPAS-GKGTQCELIKTKYQL 31 (222)
T ss_dssp EEESTTS-SHHHHHHHHHHHHCC
T ss_pred EECCCCC-CHHHHHHHHHHHhCC
Confidence 3444444 999999999987753
No 157
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=50.06 E-value=16 Score=32.95 Aligned_cols=31 Identities=29% Similarity=0.292 Sum_probs=24.2
Q ss_pred CCcEEEEeCCCC--hHhHHHHHHHHHHhc-CCCe
Q 020059 42 SIKILAVTGTNG--KSTVVTFVGQMLNHL-GIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT~G--KTTt~~~l~~iL~~~-g~~~ 72 (331)
...+|+|+|.|| |||+...+...+... +..+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i 155 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI 155 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE
Confidence 445999999875 999999998888764 4343
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=50.01 E-value=8 Score=30.45 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=16.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+..+|.++|. .||||.+..|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899986 68999999987665
No 159
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=49.89 E-value=19 Score=30.35 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=25.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCC
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIE 71 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~ 71 (331)
+...|.+.|-. ||||.+..|...|...|++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 34688888864 7999999999999999987
No 160
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=49.89 E-value=19 Score=31.07 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=27.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc-CCCeeec
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL-GIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~-g~~~~~~ 75 (331)
....+++|+|-| ||||....+...+... |.++...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 366799999877 8999999999888765 7565433
No 161
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=48.68 E-value=18 Score=33.28 Aligned_cols=29 Identities=41% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhcC
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~g 69 (331)
....+|+|+|-| |||||...+...+....
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~ 195 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSE 195 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCC
Confidence 356799999977 69999999888886543
No 162
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.15 E-value=15 Score=29.45 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.9
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+...|.++|. .||||.+.+|+.-|
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468889986 69999999998877
No 163
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=48.13 E-value=5.7 Score=32.28 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
+|+|.|- .||||.+..|...|...|+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 3444443 499999999999998777655
No 164
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=47.88 E-value=19 Score=28.77 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=19.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.+++.++|. .||||...-+..-+...|.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~ 35 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVA 35 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 357889998 4677666444444445676653
No 165
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.65 E-value=17 Score=32.91 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
....+|+|+|.| ||||+...|...+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 356799999976 5999999999988764
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=47.16 E-value=23 Score=27.22 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
....+++.|.+ ||||+...+...+...|.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~ 67 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNA 67 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcE
Confidence 34688888875 89999999999998766544
No 167
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=47.08 E-value=16 Score=30.69 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=22.1
Q ss_pred eCCCChHhHHHHHHHHHHhcCCCee
Q 020059 49 TGTNGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 49 tGT~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
.|-.||||++.-+++.|...|+++.
T Consensus 14 kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 14 APGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 4788999999999999999999874
No 168
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=46.89 E-value=13 Score=29.54 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=18.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
+..+|++.|-| ||||+..+|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 55788888875 799999988654
No 169
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=46.84 E-value=19 Score=30.07 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhc----CCCee
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL----GIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~----g~~~~ 73 (331)
+...|.+.|-. ||||.+..|..-|... |+++.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~ 61 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV 61 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee
Confidence 45788899876 5999999999999988 87763
No 170
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=46.79 E-value=19 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.6
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
....|.++|. .||||.+..|+.-|
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3448889887 58999999998877
No 171
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=46.57 E-value=14 Score=37.33 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=28.7
Q ss_pred CCcEEEEeCC---CChHhHHHHHHHHHHhc-----CCCeee
Q 020059 42 SIKILAVTGT---NGKSTVVTFVGQMLNHL-----GIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT---~GKTTt~~~l~~iL~~~-----g~~~~~ 74 (331)
..+.|-|+|| .|||+++.-|-.+|+.. |+++..
T Consensus 33 ~~~~l~I~gt~s~vGKT~vt~gL~r~l~~~~~~~~G~~V~~ 73 (831)
T 4a0g_A 33 NHPTYLIWSANTSLGKTLVSTGIAASFLLQQPSSSATKLLY 73 (831)
T ss_dssp SSCEEEEEESSSSSCHHHHHHHHHHHHHSCSSCCTTCEEEE
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHHHHhcccccCCceEEE
Confidence 4678999998 59999999999999999 888754
No 172
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=46.49 E-value=16 Score=29.18 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.8
Q ss_pred EEEEeCC--CChHhHHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.|+|+|. .||||.+..|+.-|.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 5677776 579999999998774
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=46.07 E-value=16 Score=28.09 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=19.2
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~ 73 (331)
++|.|+|.. ||||.+..| +..|+.+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L----~~~g~~~i 29 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL----KERGAKVI 29 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH----HHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHH----HHCCCcEE
Confidence 477888864 799999988 55676653
No 174
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=45.22 E-value=20 Score=28.03 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+...++++.|-| ||||...+|..++
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 466799999987 5999999999888
No 175
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=45.19 E-value=14 Score=29.22 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=16.5
Q ss_pred cEEEEeCCC--ChHhHHHHHHH
Q 020059 44 KILAVTGTN--GKSTVVTFVGQ 63 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~ 63 (331)
.+|++.|.| ||||+..+|..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 478888876 79999999975
No 176
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.02 E-value=18 Score=28.52 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=18.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
..+|.++|. .||||.+..|+.-|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 357888887 48999999988765
No 177
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.85 E-value=15 Score=29.41 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=19.8
Q ss_pred CCCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.+.++|.|+|. .||||.+..|+.-|
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999986 47999999887654
No 178
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=44.80 E-value=30 Score=28.64 Aligned_cols=35 Identities=11% Similarity=0.011 Sum_probs=22.1
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHH--HHhcCCCeeec
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQM--LNHLGIEAFVG 75 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~i--L~~~g~~~~~~ 75 (331)
.+.++..+||+-||+-|+.+|..+ +..+|.++.+.
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 355788999995555555555544 44578777543
No 179
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=44.06 E-value=14 Score=28.84 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=18.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
++|.++|. .||||++..|+.-|.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57778876 699999999988764
No 180
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=43.96 E-value=16 Score=30.92 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=16.9
Q ss_pred cEEEEeCC--CChHhHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQM 64 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~i 64 (331)
.+|++||. .||||++.+|..-
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~ 24 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 58999986 6899999888654
No 181
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=43.47 E-value=20 Score=28.20 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=18.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.+.|.++|- .||||++..|+.-|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457777774 69999999998876
No 182
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=43.25 E-value=25 Score=34.33 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+..+|.++|. .||||++..|+.-|.+.|+.+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 4568999986 7999999999999988887753
No 183
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=43.05 E-value=22 Score=34.04 Aligned_cols=31 Identities=29% Similarity=0.337 Sum_probs=25.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~ 72 (331)
...+|.++|. .||||++..|+.-|...|..+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~ 403 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKV 403 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeE
Confidence 3568889876 579999999999998887654
No 184
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=42.99 E-value=20 Score=29.84 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.0
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+..+|+|.|-| ||||...+|+.-|
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999987 6999999988766
No 185
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=42.85 E-value=18 Score=28.49 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=18.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
...|.++|.. ||||.+.+|+.-|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578888864 7999999998766
No 186
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=42.33 E-value=18 Score=28.71 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=19.5
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
.++|+|+|. .||||.+.+|+.-|.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357888886 589999999998773
No 187
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=41.74 E-value=15 Score=28.95 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.1
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
.+.+|+|-| ||||+...|..+|..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 388899987 599999999998863
No 188
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=41.53 E-value=20 Score=28.24 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=19.1
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
...+|.++|. .||||.+..|+.-|
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467888875 68999999998766
No 189
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=41.51 E-value=20 Score=28.13 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=19.1
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+.+.|.++|. .||||.+..|+.-|
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4467788886 58999999998776
No 190
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.36 E-value=17 Score=28.40 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.6
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+.|.|+|. .||||++..|+.-|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45777775 58999999998776
No 191
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=40.94 E-value=23 Score=28.82 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=19.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
+...|.++|. .||||.+..|+.-|.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4457778776 589999999988773
No 192
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=40.85 E-value=14 Score=32.58 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
++++++|||-+ ||||....|.... .|+++
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~ 33 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ--HGYKI 33 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC--CCCCE
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc--CCCcE
Confidence 57899999977 5888877766543 34444
No 193
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=39.72 E-value=16 Score=35.35 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=20.4
Q ss_pred CCcEEEEeCCCChHhH-HHHHHHHHHhcCC
Q 020059 42 SIKILAVTGTNGKSTV-VTFVGQMLNHLGI 70 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt-~~~l~~iL~~~g~ 70 (331)
..-++|-.|| |||+| +.-+.+++...|.
T Consensus 24 ~~lV~a~aGs-GKT~~l~~ri~~l~~~~~~ 52 (647)
T 3lfu_A 24 NLLVLAGAGS-GKTRVLVHRIAWLMSVENC 52 (647)
T ss_dssp CEEEEECTTS-CHHHHHHHHHHHHHHTSCC
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHHhCCC
Confidence 3457777787 99998 5567788877654
No 194
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=38.98 E-value=23 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=20.4
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
+..+|.|+|. .||||++..|+.-|
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 4579999985 67999999999877
No 195
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=37.81 E-value=33 Score=32.81 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=26.4
Q ss_pred cEEEEe-CC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT-GT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt-GT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+.|-|| || -||+.+++-|-.+|+..|+++..
T Consensus 4 ~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~ 38 (545)
T 1s1m_A 4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTI 38 (545)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeee
Confidence 567777 54 69999999999999999999853
No 196
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=37.78 E-value=29 Score=33.44 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcC-CCe
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLG-IEA 72 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g-~~~ 72 (331)
+..+|.++|- .||||++..|+..|...| +.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~ 428 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSV 428 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCE
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceE
Confidence 4467889864 579999999999999877 554
No 197
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=37.50 E-value=33 Score=32.81 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=26.8
Q ss_pred cEEEEe-CC---CChHhHHHHHHHHHHhcCCCeee
Q 020059 44 KILAVT-GT---NGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 44 ~~I~Vt-GT---~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+.|-|| || -||+.+++-|-.+|+..|+++..
T Consensus 13 ~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~ 47 (550)
T 1vco_A 13 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTA 47 (550)
T ss_dssp EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeE
Confidence 677788 54 69999999999999999999853
No 198
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=36.79 E-value=18 Score=29.67 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+..+++|.|-| ||||+..+|...+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999965 7999999999877
No 199
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=36.68 E-value=33 Score=27.67 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=21.5
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.+.|.|+|. .||||+..-|..-+... +++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~ 61 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIG 61 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEE
Confidence 5677888865 79999987777666444 4443
No 200
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=36.40 E-value=23 Score=29.99 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.++|+++|.+ ||||+..+|+..|.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5688888875 79999999998773
No 201
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=35.88 E-value=24 Score=29.13 Aligned_cols=26 Identities=15% Similarity=0.200 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||+..+|...+.
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 367899999988 69999999888764
No 202
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=33.67 E-value=38 Score=29.71 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+++|.|-| ||||...+|..++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 467899999976 6999999999998
No 203
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=33.57 E-value=29 Score=29.67 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 467899999999 79999998876654
No 204
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=33.31 E-value=35 Score=28.60 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+..+|+|+|-. ||||++..|+.-|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999865 89999999988773
No 205
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=33.14 E-value=21 Score=33.16 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEeCC--CChHhHHHHHHHHHHhcCC
Q 020059 45 ILAVTGT--NGKSTVVTFVGQMLNHLGI 70 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL~~~g~ 70 (331)
.+.|+|- .|||++...+...|...|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 5555542 4999999998888888876
No 206
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=32.93 E-value=51 Score=26.98 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQ 63 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~ 63 (331)
+..+++|.|-| ||||+..++..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 66799999987 79999998883
No 207
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=32.59 E-value=24 Score=28.61 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.0
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.+|+|+|. .||||++.+|+..|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 47889985 69999999988765
No 208
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=32.41 E-value=93 Score=26.54 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=34.7
Q ss_pred CCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe
Q 020059 25 GKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 25 g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.+|+++-.+-..+.. .+.+.|+|-||.| |.-+.+....+++.|..+
T Consensus 94 ~iPvigiiep~~~~~-~~~~~IGVLaT~~-Ti~s~~y~~~l~~~~~~~ 139 (268)
T 3out_A 94 AIPVIDVITAGVSLV-DNLNTVGVIATPA-TINSNAYALQIHKKNPNI 139 (268)
T ss_dssp TSCEEEHHHHHHHTT-TTCSEEEEEECHH-HHHHTHHHHHHHHHCTTS
T ss_pred CCCEEeccHHHHHHh-ccCCeEEEEecCc-ccccHHHHHHHHHhCCCC
Confidence 699999666555443 4678999999998 555678888888877654
No 209
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=31.62 E-value=42 Score=27.58 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=19.7
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
....|.++|. .||||.+.+|+.-|.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4456777776 689999999998774
No 210
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.53 E-value=31 Score=28.03 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.5
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
..|.++|. .||||.+.+|+.-|
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 45666664 69999999999877
No 211
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=31.49 E-value=19 Score=30.32 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999988 69999999887664
No 212
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=31.34 E-value=32 Score=32.60 Aligned_cols=26 Identities=0% Similarity=-0.096 Sum_probs=22.8
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~ 67 (331)
+..+|.++|- .||||++..|+.-|..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5568999996 5999999999999986
No 213
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=31.33 E-value=35 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
....+++|.|-| ||||...+|.-++
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999998 7999999888653
No 214
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=31.23 E-value=33 Score=29.19 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999 79999998876654
No 215
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=30.80 E-value=37 Score=27.33 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.3
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.|.|+|- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3667774 58999999997665
No 216
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=30.56 E-value=35 Score=28.61 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=20.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.. .+++|.|-| ||||...+|.-++.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36 899999998 79999999887654
No 217
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=30.34 E-value=30 Score=29.49 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 467899999998 79999988876654
No 218
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=30.30 E-value=39 Score=31.75 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=22.8
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
. .+++|.|-| ||||+..+|.-++...
T Consensus 29 ~-e~~~liG~nGsGKSTLl~~l~Gl~~p~ 56 (483)
T 3euj_A 29 E-LVTTLSGGNGAGKSTTMAGFVTALIPD 56 (483)
T ss_dssp S-SEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred c-ceEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 5 899999998 7999999999988753
No 219
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=30.26 E-value=35 Score=27.86 Aligned_cols=25 Identities=16% Similarity=0.090 Sum_probs=21.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
+..+++|.|-| ||||...+|.-+ .-
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p 47 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-AL 47 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CC
Confidence 45789999998 699999999988 53
No 220
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=29.77 E-value=27 Score=28.93 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=20.2
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+++|.|-| ||||...+|.-++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56799999998 79999888875543
No 221
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.56 E-value=32 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 366799999998 79999988876553
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=29.52 E-value=51 Score=28.58 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=28.2
Q ss_pred HHcCCeeee-------HHHHHHhhCCCCCcEEEEeCCCC--hHhHHHHHHHHHH
Q 020059 22 LQSGKRVMS-------ELDFAAQVIPRSIKILAVTGTNG--KSTVVTFVGQMLN 66 (331)
Q Consensus 22 ~~~g~~~l~-------~~~~~~~~~~~~~~~I~VtGT~G--KTTt~~~l~~iL~ 66 (331)
.+.|.+++. .++.+.... ...++++.|.|| |||+..+|. .+.
T Consensus 139 ~~~g~~~~~~SA~~g~gi~~L~~~l--~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGEGIDELVDYL--EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp HHTTCEEEECCTTTCTTHHHHHHHT--TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred HHCCCeEEEEECCCCCCHHHHHhhc--cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 345666552 244455554 457889999987 999999888 543
No 223
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=29.32 E-value=38 Score=26.14 Aligned_cols=20 Identities=35% Similarity=0.310 Sum_probs=15.8
Q ss_pred cEEEEeCC--CChHhHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQ 63 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~ 63 (331)
++|.|+|. .||||.+..|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 36777776 589999998876
No 224
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=28.72 E-value=29 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.381 Sum_probs=21.7
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHHhcCCCee
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLNHLGIEAF 73 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~~~g~~~~ 73 (331)
+.|.+-|. .||||.+.+|..-|.+ |+++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHC-CCCEE
Confidence 35656553 6899999999999964 76654
No 225
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=28.62 E-value=39 Score=28.46 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
.+..+++|.|-| ||||...+|.-+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 366799999998 799999888765
No 226
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=28.50 E-value=60 Score=25.71 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=24.0
Q ss_pred cEEEEeCCC--ChHhHHHHHHHHHHhcCCCe
Q 020059 44 KILAVTGTN--GKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 44 ~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~ 72 (331)
+.+.++|.. |||+++..+..-+...|.++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~ 85 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSS 85 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 678888864 89999999999988777665
No 227
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=28.45 E-value=19 Score=30.78 Aligned_cols=27 Identities=33% Similarity=0.509 Sum_probs=21.7
Q ss_pred CCCcEEEEeCCCC--hHhHHHHHHHHHHh
Q 020059 41 RSIKILAVTGTNG--KSTVVTFVGQMLNH 67 (331)
Q Consensus 41 ~~~~~I~VtGT~G--KTTt~~~l~~iL~~ 67 (331)
....+++|.|-|| |||+..+|.-++.-
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 63 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSP 63 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 3667999999984 99999988876653
No 228
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=28.21 E-value=46 Score=27.96 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=16.8
Q ss_pred cEEEEeCC--CChHhHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
++|.|+|. .||||.+..|+.-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 46777775 48999999887765
No 229
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=27.73 E-value=30 Score=29.33 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 366799999998 79999998876654
No 230
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=27.55 E-value=35 Score=28.56 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-+++
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999998 69999888876553
No 231
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=27.43 E-value=35 Score=28.86 Aligned_cols=25 Identities=40% Similarity=0.486 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
+..+++|.|-| ||||...+|.-++.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56799999998 79999888876553
No 232
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=27.43 E-value=41 Score=28.76 Aligned_cols=26 Identities=35% Similarity=0.506 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466799999998 69999998876654
No 233
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=27.36 E-value=53 Score=27.29 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+...|.++|.- ||||.+.+|..-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 55689999874 7999999998665
No 234
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=26.87 E-value=37 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=22.3
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeee
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~ 74 (331)
+.-++|-+| .||||+..++...+...|.++..
T Consensus 37 ~~~i~G~~G-~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 37 NWTILAKPG-AGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CEEEECCTT-SSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEcCCC-CCHHHHHHHHHHHHHHCCCEEEE
Confidence 334555555 58999998888777777766543
No 235
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=26.74 E-value=26 Score=29.21 Aligned_cols=64 Identities=17% Similarity=0.102 Sum_probs=40.9
Q ss_pred eeeeeccccccCChHHHHHHHcCCeeeeHHHHHH---hhCC----CCCcEEEEeCCCChH-hHHHHHHHHHHhc
Q 020059 3 MLWLFLLEFQLKATGLACLLQSGKRVMSELDFAA---QVIP----RSIKILAVTGTNGKS-TVVTFVGQMLNHL 68 (331)
Q Consensus 3 ~~~~~~~~~~~~~p~~~~a~~~g~~~l~~~~~~~---~~~~----~~~~~I~VtGT~GKT-Tt~~~l~~iL~~~ 68 (331)
+|||..+..+..|+.+.++.++|+++- ..+... ..+| +..-+|+|+ |+||+ ..+..|..-|.+.
T Consensus 93 dLVIaAT~d~~~N~~I~~~ak~gi~VN-vvD~p~~~~f~~Paiv~rg~l~iaIS-T~G~sP~la~~iR~~ie~~ 164 (223)
T 3dfz_A 93 FFIVVATNDQAVNKFVKQHIKNDQLVN-MASSFSDGNIQIPAQFSRGRLSLAIS-TDGASPLLTKRIKEDLSSN 164 (223)
T ss_dssp SEEEECCCCTHHHHHHHHHSCTTCEEE-C-----CCSEECCEEEEETTEEEEEE-CTTSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCEEE-EeCCcccCeEEEeeEEEeCCEEEEEE-CCCCCcHHHHHHHHHHHHH
Confidence 577888888888888887655888853 343332 2222 344578885 88986 6677777777654
No 236
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=26.72 E-value=47 Score=28.44 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=32.9
Q ss_pred cCCeeeeHHHHHHhhCCCCCcEEEEeCCCChHhHHHHHHHHHHhcCCCe
Q 020059 24 SGKRVMSELDFAAQVIPRSIKILAVTGTNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 24 ~g~~~l~~~~~~~~~~~~~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.++|+++-.+...+....+.+.|+|-||.| |..+.+....|++.|..+
T Consensus 121 ~~iPvigiiea~~~aa~~~~~rVgVLaT~~-T~~s~~y~~~l~~~g~~~ 168 (268)
T 3s81_A 121 AKARMISILDATLGDIPPSARHVGLLATNA-TLATGLYQKKALARGLTL 168 (268)
T ss_dssp CSSEEECHHHHHHHTSCTTCCEEEEECCHH-HHHTTTTHHHHHHHTCEE
T ss_pred CCCCEEcccHHHHHHHHhcCCcEEEEechH-HhhHHHHHHHHHHcCCce
Confidence 478999877666554324567899999987 444456667777777654
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=26.60 E-value=44 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.8
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+++|.|-| ||||...+|.-++
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 367799999988 7999888886544
No 238
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=26.59 E-value=28 Score=28.76 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=19.4
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
++..+|+|.|-+ ||||...+|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356799999987 699998888765
No 239
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=26.23 E-value=36 Score=32.26 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=19.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
....|+|+|-| |||||..+|...+..
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34568888865 899999988777743
No 240
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=26.17 E-value=45 Score=28.28 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-++.
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 366799999998 79999999886653
No 241
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=25.99 E-value=38 Score=29.11 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 366799999999 69999998876654
No 242
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=25.89 E-value=39 Score=28.81 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.5
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
..+++|.|.| ||||...+|.-++
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 6799999999 7999999887655
No 243
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=25.50 E-value=1e+02 Score=29.51 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=26.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeec
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
..+++.|+|-. |||||...+...|...|.++.+.
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 34677777754 89999999999999999887543
No 244
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=25.44 E-value=47 Score=31.81 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=25.8
Q ss_pred cEEEEe---CCCChHhHHHHHHHHHHhcCCCeeec
Q 020059 44 KILAVT---GTNGKSTVVTFVGQMLNHLGIEAFVG 75 (331)
Q Consensus 44 ~~I~Vt---GT~GKTTt~~~l~~iL~~~g~~~~~~ 75 (331)
+.|.|+ |-.||||++.-++..|...|.++.+.
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 445554 56899999999999999999998654
No 245
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=25.42 E-value=42 Score=27.17 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=21.5
Q ss_pred CcEEEEeC--CCChHhHHHHHHHHHHhcCCCe
Q 020059 43 IKILAVTG--TNGKSTVVTFVGQMLNHLGIEA 72 (331)
Q Consensus 43 ~~~I~VtG--T~GKTTt~~~l~~iL~~~g~~~ 72 (331)
.++|.|+| -.||||++..|+.-| |+.+
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l---g~~~ 34 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY---NIPL 34 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT---TCCE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh---CcCE
Confidence 46899997 478999999999877 5554
No 246
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=25.29 E-value=41 Score=29.98 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=19.8
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...++|.|.| ||||...+|..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5688999876 59999999988865
No 247
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=25.23 E-value=39 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.2
Q ss_pred CcEEEEeCC--CChHhHHHHHHHHH
Q 020059 43 IKILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 43 ~~~I~VtGT--~GKTTt~~~l~~iL 65 (331)
...|.++|. .||||.+..|+.-|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356666665 58999999998755
No 248
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=25.07 E-value=85 Score=25.47 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=21.5
Q ss_pred CCcEEEEeCCC--ChHhHHHHH-HHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFV-GQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l-~~iL~~~g~~~~~~g 76 (331)
...++.|+|-+ ||||.+.-+ ..++. .|.++...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~ 58 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-MGEPGIYVA 58 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEE
Confidence 45688888865 699996544 44544 455554433
No 249
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=24.58 E-value=32 Score=32.11 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=23.5
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHHhc
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLNHL 68 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~~~ 68 (331)
+...+++|.|-| ||||...+|..++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~ 165 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALKF 165 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCccccc
Confidence 467899999987 7999999999988643
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=24.57 E-value=40 Score=27.69 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=19.7
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+++|.|-| ||||...+|.-+++
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56789999988 79999888865543
No 251
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=24.54 E-value=44 Score=29.79 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
++|+|+|. .||||.+..|+.-|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 58999986 599999999988775
No 252
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=24.48 E-value=43 Score=28.23 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-+++
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 356799999998 69999888876553
No 253
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=24.36 E-value=91 Score=25.84 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=19.6
Q ss_pred CCCcEEEEeCCCChHhHHHHHHHH--HHhcCCCee
Q 020059 41 RSIKILAVTGTNGKSTVVTFVGQM--LNHLGIEAF 73 (331)
Q Consensus 41 ~~~~~I~VtGT~GKTTt~~~l~~i--L~~~g~~~~ 73 (331)
....+..|||+-|++-|+.+|..+ +..+|.++.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvl 60 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVV 60 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceE
Confidence 356899999984444445444444 344566663
No 254
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.30 E-value=59 Score=26.22 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.1
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHHh
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLNH 67 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~~ 67 (331)
..+..|+|-| ||||....|..+|-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 4688888887 899999999998874
No 255
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=24.20 E-value=51 Score=26.52 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=15.6
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.|.|+|- .||||.+.+|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3667774 58999999987544
No 256
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=24.07 E-value=1.2e+02 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=18.0
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHhcCCCeeecccCcccch
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNHLGIEAFVGGNLGNPLS 83 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~~g~~~~~~g~~g~~~~ 83 (331)
..+++.|...+|.+- ..+ ...+ .|..+++.|..|..-+
T Consensus 192 G~~v~~~Sa~~~~gl-~~L-~~~~--~G~~~~lvG~sG~GKS 229 (358)
T 2rcn_A 192 GYRVLMVSSHTQDGL-KPL-EEAL--TGRISIFAGQSGVGKS 229 (358)
T ss_dssp TCCEEECBTTTTBTH-HHH-HHHH--TTSEEEEECCTTSSHH
T ss_pred CCcEEEEecCCCcCH-HHH-HHhc--CCCEEEEECCCCccHH
Confidence 456666666665542 111 1111 3555555565555443
No 257
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.44 E-value=53 Score=27.13 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=19.3
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+..+++|.|-| ||||...+|.-++
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56799999987 6999888886554
No 258
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=23.42 E-value=1.1e+02 Score=25.73 Aligned_cols=33 Identities=9% Similarity=0.081 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCChHhHHHHHHHHHHh--cCCCeee
Q 020059 42 SIKILAVTGTNGKSTVVTFVGQMLNH--LGIEAFV 74 (331)
Q Consensus 42 ~~~~I~VtGT~GKTTt~~~l~~iL~~--~g~~~~~ 74 (331)
..++..++|+-||+-|+++|..+.+. +|+++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli 52 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLV 52 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEE
Confidence 35789999996666677777776665 5666643
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=23.30 E-value=56 Score=27.16 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=20.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
....+++|.|-| ||||...+|.-+++
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 367899999988 59998888775543
No 260
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=23.22 E-value=37 Score=29.91 Aligned_cols=27 Identities=7% Similarity=-0.036 Sum_probs=23.0
Q ss_pred eeeeccccccCChHHHHHHHcCCeeee
Q 020059 4 LWLFLLEFQLKATGLACLLQSGKRVMS 30 (331)
Q Consensus 4 ~~~~~~~~~~~~p~~~~a~~~g~~~l~ 30 (331)
.+|++....+....++.|.+.++|++.
T Consensus 86 ~IIvtrg~~pp~elie~A~e~~ipLl~ 112 (312)
T 1knx_A 86 AIILTKSFTDPTVLLQVNQTYQVPILK 112 (312)
T ss_dssp CEEEETTTCCCHHHHHHGGGTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCEEEE
Confidence 467888888887888899999999996
No 261
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=23.07 E-value=48 Score=28.70 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=20.0
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
.+..+++|.|-| ||||...+|.-++
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 366799999998 6999988886554
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=22.96 E-value=65 Score=26.15 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQML 65 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL 65 (331)
+.++|+|.|-+ ||||+...|...+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 56789999987 5999988877654
No 263
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=22.66 E-value=59 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..++++.|-| ||||+..+|+-++.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 366799999988 79999999998875
No 264
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=22.58 E-value=49 Score=26.65 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.4
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+++|.|-| ||||+..+|...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56799999986 59999999987554
No 265
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=22.54 E-value=30 Score=35.43 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=29.9
Q ss_pred cCChHHHHHHHc-CCeeeeHHHHHHhhCCCCCcEEEEeCCC--ChHhHHHHHHHH
Q 020059 13 LKATGLACLLQS-GKRVMSELDFAAQVIPRSIKILAVTGTN--GKSTVVTFVGQM 64 (331)
Q Consensus 13 ~~~p~~~~a~~~-g~~~l~~~~~~~~~~~~~~~~I~VtGT~--GKTTt~~~l~~i 64 (331)
..||.++..... +..++..+.+- . .+..+++|||-| ||||.-.++..+
T Consensus 646 ~rHP~le~~~~~~~~~V~ndvsl~---~-~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 646 GRHPVIDVLLGEQDQYVPNNTDLS---E-DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp ECCHHHHHHTCSCSSSCCEEEEEC---T-TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccCCceeccccccc---C-CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 467877754432 23343333211 1 356799999999 599998888644
No 266
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=22.45 E-value=72 Score=24.25 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=19.9
Q ss_pred CcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 43 IKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 43 ~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
..+..|.|-| ||||....|..+|.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 3577888877 89999999998885
No 267
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=22.45 E-value=58 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcC
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLG 69 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g 69 (331)
+..+|+++|-+ ||||+..+|+..|...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~ 397 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMG 397 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccC
Confidence 55788888876 69999999999998643
No 268
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=22.26 E-value=56 Score=27.39 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||...+|.-++.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999987 69999988876654
No 269
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=22.21 E-value=96 Score=27.53 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHHhcCCCeeecc
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLNHLGIEAFVGG 76 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~~~g~~~~~~g 76 (331)
...++.|.|-+ ||||.+..+..-+...|.++....
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56788888765 899998887766666676665444
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=22.11 E-value=50 Score=28.31 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..+++|.|-| ||||+..+|.-++.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 366799999987 59999998887664
No 271
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=21.96 E-value=62 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..++++.|-| ||||+..+|+-+++
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 366799999988 79999999998775
No 272
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=21.79 E-value=68 Score=26.11 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=16.2
Q ss_pred EEEEeCC--CChHhHHHHHHHHH
Q 020059 45 ILAVTGT--NGKSTVVTFVGQML 65 (331)
Q Consensus 45 ~I~VtGT--~GKTTt~~~l~~iL 65 (331)
.|.++|. .||||.+.+|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 3556654 58999999998877
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=21.42 E-value=49 Score=26.45 Aligned_cols=25 Identities=32% Similarity=0.332 Sum_probs=18.3
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
..++|.++|- .||||.+..|...+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4556677764 489999999887663
No 274
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=20.86 E-value=55 Score=29.27 Aligned_cols=26 Identities=15% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..++++.|-| ||||+..+|+-+++
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 366799999999 79999999987765
No 275
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=20.75 E-value=55 Score=27.00 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=18.4
Q ss_pred cEEEEeCC--CChHhHHHHHHHHHH
Q 020059 44 KILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 44 ~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
..|.|.|. .||||.+..|+.-|.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46777765 499999999998875
No 276
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=20.60 E-value=90 Score=25.74 Aligned_cols=47 Identities=17% Similarity=0.117 Sum_probs=29.0
Q ss_pred HHHHHcCCeeeeHHHHHH---hhCCCCCcEEEEeCC--CChHhHHHHHHHHHH
Q 020059 19 ACLLQSGKRVMSELDFAA---QVIPRSIKILAVTGT--NGKSTVVTFVGQMLN 66 (331)
Q Consensus 19 ~~a~~~g~~~l~~~~~~~---~~~~~~~~~I~VtGT--~GKTTt~~~l~~iL~ 66 (331)
+..+-+++..+.-+..+. +..| +...+.+.|. .||||++.-|...|.
T Consensus 32 ~~l~yq~~~~~~f~~~l~~~~~~iP-kkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 32 QFLRYQQIEFITFLGALKSFLKGTP-KKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCT-TCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHcCcCHHHHHHHHHHHHhcCC-cccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334445666544343333 3332 2347888887 799999988888874
No 277
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=20.46 E-value=46 Score=29.75 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=19.1
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+++|+|-+ ||||+..+|...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45678888876 79999988876554
No 278
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=20.43 E-value=87 Score=24.21 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=15.6
Q ss_pred CCcEEEEeCCC--ChHhHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTF 60 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~ 60 (331)
+..++++.|-| ||||+..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 55788999987 69999986
No 279
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=20.32 E-value=62 Score=26.99 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=19.9
Q ss_pred CCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 42 SIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 42 ~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
...+|.++|-+ ||||++..|...|.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688888875 79999999987764
No 280
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=20.18 E-value=59 Score=29.02 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=21.9
Q ss_pred CCCcEEEEeCCC--ChHhHHHHHHHHHH
Q 020059 41 RSIKILAVTGTN--GKSTVVTFVGQMLN 66 (331)
Q Consensus 41 ~~~~~I~VtGT~--GKTTt~~~l~~iL~ 66 (331)
.+..++++.|-| ||||+..+|+-+++
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 366799999999 69999999987765
No 281
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=20.02 E-value=96 Score=24.84 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=18.2
Q ss_pred CCcEEEEeCC--CChHhHHHHHHHHHHhc
Q 020059 42 SIKILAVTGT--NGKSTVVTFVGQMLNHL 68 (331)
Q Consensus 42 ~~~~I~VtGT--~GKTTt~~~l~~iL~~~ 68 (331)
+.+.|.|.|. .||||+..-+..-+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 4567777765 67999887666554433
Done!