BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020060
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 177/343 (51%), Gaps = 38/343 (11%)
Query: 17 DDLYHVKETFFPANPDDKVSK----LQNESDLALR----LLGSVPPEQRKSPTQRATYEY 68
D LY ++++F + + + +Q E + L+ +LGS E A
Sbjct: 55 DRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVE--------AQALM 106
Query: 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128
LKGK L+V P+Y +AE LSKAVKL P L +AW LG WKKGD+ +A CF+ AL+
Sbjct: 107 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH 166
Query: 129 GPNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187
NK L LSM+ R + S + + V +S++ AK A+ +DV DG SWY LGNA L+
Sbjct: 167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 226
Query: 188 FFVTGSWDHSKL-LQSLKAYQNAEK-DERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245
+F TG + K+ Q+L AY AEK D + SNPDL+ N AT++KY E+Y AL GF +
Sbjct: 227 YFNTG--QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284
Query: 246 ALKDPSLNATEEV-QMMVNLLDKIENLLKGHAKTK-----------RXXXXXXXXXXXXX 293
A DP+ ++ Q ++ L ++ +LL+ KTK R
Sbjct: 285 AALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQ 344
Query: 294 XXXHKRATVDL-----LSEGLNKAVAVVGKVLFFVKHENVTPL 331
++ T++L L G+N V+GKV+F + E P
Sbjct: 345 SASGQKMTLELKPLSTLQPGVNSGTVVLGKVVFSLTTEEKVPF 387
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 64/124 (51%), Gaps = 16/124 (12%)
Query: 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSM 145
++ KA++L+P A+AW LG+ +K+GD A + AL P + ++
Sbjct: 22 EYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYY 80
Query: 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA 205
QG +E+I++ ++A+ LD + +WYNLGNA ++ G +D ++++
Sbjct: 81 KQGD------YDEAIEYYQKALELDPRSAEAWYNLGNA----YYKQGDYD-----EAIEY 125
Query: 206 YQNA 209
YQ A
Sbjct: 126 YQKA 129
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 21/146 (14%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEE 158
A+AW LG+ +K+GD A + AL P + ++ QG +E
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGD------YDE 53
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA-EKDERMKS 217
+I++ ++A+ LD + +WYNLGNA ++ G +D ++++ YQ A E D R
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNA----YYKQGDYD-----EAIEYYQKALELDPRSAE 104
Query: 218 N----PDLYFNCATVNKYLENYERAL 239
+ Y+ ++ +E Y++AL
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEE 158
A+AW LG+ +K+GD A + AL PN ++ QG +E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGD------YDE 61
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
+I++ ++A+ LD + +WYNLGNA ++ G +D +
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNA----YYKQGDYDEA 96
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSM 145
++ KA++L+P+ A+AW LG+ +K+GD A + AL PN ++
Sbjct: 30 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYY 88
Query: 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
QG +E+I++ ++A+ LD + + NLGNA
Sbjct: 89 KQGD------YDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215
+E+I++ ++A+ LD + +WYNLGNA ++ G +D ++++ YQ A E
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNA----YYKQGDYD-----EAIEYYQKAL--ELD 73
Query: 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251
+N + ++N +Y+ A+ ++ + DP+
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEE 158
A+AW LG+ +K+GD A + AL PN ++ QG +E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWYNLGNAYYKQGD------YDE 61
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
+I++ ++A+ L + +WYNLGNA ++ G +D +
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNA----YYKQGDYDEA 96
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLE 142
+A ++ KA++L P+ A+AW LG+ +K+GD A + AL PN ++
Sbjct: 27 EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN-NAEAWYNLGN 85
Query: 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
QG +E+I++ ++A+ L + + NLGNA
Sbjct: 86 AYYKQGD------YDEAIEYYQKALELYPNNAEAKQNLGNA 120
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 79 EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQL 138
+Y+K A ++ KA++L+P+ A AW LG+ +K+GD A + AL PN
Sbjct: 24 DYQK-AIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAK---- 78
Query: 139 SMLERSMA---QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
+ R A QG +++I+ ++A+ LD + + NLGNA
Sbjct: 79 AWYRRGNAYYKQGD------YQKAIEDYQKALELDPNNAKAKQNLGNA 120
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEE 158
A+AW LG+ +K+GD A + AL PN ++ QG ++
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN-NASAWYNLGNAYYKQGD------YQK 61
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204
+I++ ++A+ LD + +WY GNA ++ G D+ K ++ +
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNA----YYKQG--DYQKAIEDYQ 101
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 36/164 (21%)
Query: 46 LRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCL 105
LR L S+ P A Y +G I + YR+ A++L P DA+ L
Sbjct: 227 LRAL-SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR--------AIELQPHFPDAYCNL 277
Query: 106 GSCIWKKGDLPAAKNCFNLALSKGP-NKKILCQLSMLER--------------------S 144
+ + +KG + A++C+N AL P + L L+ ++R
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 145 MAQGSENQAEI------VEESIQHAKEAITLDVKDGNSWYNLGN 182
A N A + ++E++ H KEAI + +++ N+GN
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 27/128 (21%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN--------KK 133
++A +H A++L P D ++ L + + GD+ A + AL P+
Sbjct: 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143
Query: 134 ILCQLSMLERSMA---QGSENQAEI----------------VEESIQHAKEAITLDVKDG 174
+L L LE + A + E Q + +I H ++A+TLD
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203
Query: 175 NSWYNLGN 182
+++ NLGN
Sbjct: 204 DAYINLGN 211
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMA 146
H KAV L+P+ DA++ LG+ + + A + ALS PN + + ++A
Sbjct: 191 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLA 244
Query: 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183
Q +++ +I + AI L +++ NL NA
Sbjct: 245 CVYYEQG-LIDLAIDTYRRAIELQPHFPDAYCNLANA 280
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 81 RKDAEDHLSK-AVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
R D H S A+K NP LA+A+ LG+ ++G L A + AL P+
Sbjct: 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
++ KA++L+P+ A+AW LG+ +K+GD A + AL PN
Sbjct: 30 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEE 158
A+AW LG+ +K+GD A + AL PN ++ QG +E
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGD------YDE 61
Query: 159 SIQHAKEAITLDVKDGNSWYNLGNA 183
+I++ ++A+ LD + + NLGNA
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNA 86
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 4/42 (9%)
Query: 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197
+E+I++ ++A+ LD + +WYNLGNA ++ G +D +
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNA----YYKQGDYDEA 62
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 91 AVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148
AV+L+P+ D LG G+ A +CF ALS PN +L + L ++A G
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG 264
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
+++ EE++ + A+ L S YNLG +C+
Sbjct: 265 NQS-----EEAVAAYRRALELQPGYIRSRYNLGISCI 296
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 91 AVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148
AV+L+P+ D LG G+ A +CF ALS PN +L + L ++A G
Sbjct: 158 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG 215
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
+++ EE++ + A+ L S YNLG +C+
Sbjct: 216 NQS-----EEAVAAYRRALELQPGYIRSRYNLGISCI 247
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 91 AVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148
AV+L+P+ D LG G+ A +CF ALS PN +L + L ++A G
Sbjct: 167 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG 224
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
+++ EE++ + A+ L S YNLG +C+
Sbjct: 225 NQS-----EEAVAAYRRALELQPGYIRSRYNLGISCI 256
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 91 AVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148
AV+L+P+ D LG G+ A +CF ALS PN +L + L ++A G
Sbjct: 167 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG 224
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
+++ EE++ + A+ L S YNLG +C+
Sbjct: 225 NQS-----EEAVAAYRRALELQPGYIRSRYNLGISCI 256
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 91 AVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148
AV+L+P+ D LG G+ A +CF ALS PN +L + L ++A G
Sbjct: 144 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW--NKLGATLANG 201
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185
+++ EE++ + A+ L S YNLG +C+
Sbjct: 202 NQS-----EEAVAAYRRALELQPGYIRSRYNLGISCI 233
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130
+A ++ KA++L+P A+AW LG+ +K+GD A + AL P
Sbjct: 21 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 34.7 bits (78), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 9/54 (16%)
Query: 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209
+E+I++ ++A+ LD + +WYNLGNA ++ G +D ++++ YQ A
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNA----YYKQGDYD-----EAIEYYQKA 63
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130
++A H +A++++P+ ADA+ +G+ + + D+ A C+ A+ P
Sbjct: 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 89 SKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131
++A+++NP+ ADA L S G++P A + AL P+
Sbjct: 101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEI 155
P+ AD+ L + ++G++ A + AL ++ + + ++A + Q ++
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKAL------EVFPEFAAAHSNLASVLQQQGKL 59
Query: 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215
+E++ H KEAI + +++ N+GN V G +L+ Y A +
Sbjct: 60 -QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQG---------ALQCYTRA-----I 104
Query: 216 KSNP---DLYFNCATVNKYLENYERALSGFEASALK 248
+ NP D + N A+++K N A++ + +ALK
Sbjct: 105 QINPAFADAHSNLASIHKDSGNIPEAIASYR-TALK 139
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118
+P TY Y +G++ ++ +Y K+A++ KA LNP ++ L ++K+G +
Sbjct: 306 NPEYPPTY-YHRGQMYFILQDY-KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363
Query: 119 KNCFNLALSKGP 130
+ FN K P
Sbjct: 364 EAFFNETKLKFP 375
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118
+P TY Y +G++ ++ +Y K+A++ KA LNP ++ L ++K+G +
Sbjct: 302 NPEYPPTY-YHRGQMYFILQDY-KNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 359
Query: 119 KNCFNLALSKGP 130
+ FN K P
Sbjct: 360 EAFFNETKLKFP 371
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL----SKGPNKKILCQLSMLE 142
HL A+ +P+ + AW LG + +GD A+ + L S+G +++++ +L +
Sbjct: 41 HLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG-DQQVVKELQVFL 99
Query: 143 RSMAQ 147
R +A+
Sbjct: 100 RRLAR 104
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 160 IQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS--KLLQSLKAY--QNAEKDERM 215
IQ+ K+ + K+ + W +L N+CL S F +G HS K+ ++ A+ +NAE E M
Sbjct: 479 IQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMM 538
Query: 216 KS 217
+
Sbjct: 539 TT 540
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 160 IQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS--KLLQSLKAY--QNAEKDERM 215
IQ+ K+ + K+ + W +L N+CL S F +G HS K+ ++ A+ +NAE E M
Sbjct: 479 IQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMM 538
Query: 216 KS 217
+
Sbjct: 539 TT 540
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS---KGPNKKILCQLSMLE 142
D KA++L+P + WL G ++ A +C+N ++ NK + +
Sbjct: 27 DLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86
Query: 143 RSMAQGSENQAEIVE 157
R + +G E +AEI E
Sbjct: 87 RYI-EGKEVEAEIAE 100
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL 135
+NP LA G+ +KKGD P A +N A+ + P IL
Sbjct: 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAIL 49
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 208 NAEKDERMKSNPDLYFNCATVNKYLEN 234
N E++ RM+ +PDL C + KYL+N
Sbjct: 25 NTEEEIRMELSPDLISACLALEKYLDN 51
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 90 KAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-PNKKILCQLSMLERSMAQG 148
KA++L+ S A A+ G+ K AK+ F AL G N + L + + Q
Sbjct: 82 KALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ- 140
Query: 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208
+ ++ + + A+ L+ D + + G CL + L ++L Q
Sbjct: 141 -------PKLALPYLQRAVELNENDTEARFQFG-MCLA--------NEGMLDEALS--QF 182
Query: 209 AEKDERMKSNPDLYFNCATVNKYLENYERAL 239
A E+ + D ++N Y EN E+AL
Sbjct: 183 AAVTEQDPGHADAFYNAGVTYAYKENREKAL 213
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 281 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 340
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 341 NQQFQYQNRIASEFNTLYHWH 361
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 281 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 340
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 341 NQQFQYQNRIASEFNTLYHWH 361
>pdb|3RR3|A Chain A, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|B Chain B, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|C Chain C, Structure Of (R)-Flurbiprofen Bound To Mcox-2
pdb|3RR3|D Chain D, Structure Of (R)-Flurbiprofen Bound To Mcox-2
Length = 560
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 277 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 336
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 337 NQQFQYQNRIASEFNTLYHWH 357
>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
Prostaglandin Bound To The Cyclooxygenase Active Site Of
Cox-2: Prostaglandin Structure
pdb|3NTG|A Chain A, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|B Chain B, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|C Chain C, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
pdb|3NTG|D Chain D, Crystal Structure Of Cox-2 With Selective Compound 23d-(R)
Length = 552
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 277 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 336
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 337 NQQFQYQNRIASEFNTLYHWH 357
>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Active Site Of Cox-2
Length = 552
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 32/81 (39%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H ++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 277 EHQRVCDILKQEHPEWGDEQLFQTSKLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 336
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 337 NQQFQYQNRIASEFNTLYHWH 357
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 282 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 341
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 342 NQQFQYQNRIASEFNTLYHWH 362
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 283 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 342
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 343 NQQFQYQNRIASEFNTLYHWH 363
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254
+H+++ LK DE++ L T+ +E+Y + LSG+ DP L
Sbjct: 282 EHNRVCDILKQEHPEWGDEQLFQTSRLILIGETIKIVIEDYVQHLSGYHFKLKFDPELLF 341
Query: 255 TEEVQMMVNLLDKIENLLKGH 275
++ Q + + L H
Sbjct: 342 NQQFQYQNRIASEFNTLYHWH 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,202,482
Number of Sequences: 62578
Number of extensions: 355345
Number of successful extensions: 838
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 72
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)