Query 020060
Match_columns 331
No_of_seqs 402 out of 2429
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 06:41:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 3.7E-28 8.1E-33 211.5 12.9 203 62-284 216-420 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 2.8E-27 6E-32 206.1 15.9 227 39-289 231-459 (966)
3 KOG1126 DNA-binding cell divis 99.9 3.1E-23 6.7E-28 182.7 18.5 219 40-282 333-587 (638)
4 KOG1126 DNA-binding cell divis 99.9 6.2E-23 1.3E-27 180.8 17.5 209 59-287 416-626 (638)
5 TIGR00990 3a0801s09 mitochondr 99.9 2E-22 4.3E-27 189.5 21.6 203 62-284 363-574 (615)
6 TIGR00990 3a0801s09 mitochondr 99.9 7.3E-22 1.6E-26 185.7 23.2 223 40-283 308-539 (615)
7 KOG1155 Anaphase-promoting com 99.9 4.9E-21 1.1E-25 162.2 21.5 187 67-273 333-528 (559)
8 PRK15174 Vi polysaccharide exp 99.9 1.1E-20 2.4E-25 177.7 18.5 209 62-283 108-349 (656)
9 TIGR02521 type_IV_pilW type IV 99.9 2.3E-19 4.9E-24 148.1 23.7 201 59-279 26-230 (234)
10 PRK09782 bacteriophage N4 rece 99.9 7.1E-20 1.5E-24 176.5 23.0 220 40-284 523-743 (987)
11 KOG0547 Translocase of outer m 99.9 1E-19 2.2E-24 155.2 20.7 211 62-284 113-494 (606)
12 KOG0547 Translocase of outer m 99.9 3.2E-19 7E-24 152.2 22.7 201 66-286 362-571 (606)
13 KOG1173 Anaphase-promoting com 99.9 1.3E-19 2.7E-24 157.2 20.3 205 61-283 309-520 (611)
14 PRK11189 lipoprotein NlpI; Pro 99.9 9.1E-20 2E-24 155.7 19.2 215 43-282 43-266 (296)
15 KOG1125 TPR repeat-containing 99.9 8E-20 1.7E-24 159.0 18.9 205 68-284 289-530 (579)
16 KOG1155 Anaphase-promoting com 99.8 5.5E-19 1.2E-23 149.9 23.0 199 64-282 262-496 (559)
17 PRK12370 invasion protein regu 99.8 4.3E-19 9.3E-24 164.3 23.1 205 40-267 275-490 (553)
18 PRK15174 Vi polysaccharide exp 99.8 3.1E-19 6.7E-24 167.9 21.1 163 103-284 216-384 (656)
19 PRK12370 invasion protein regu 99.8 5.7E-19 1.2E-23 163.5 22.4 197 64-280 258-469 (553)
20 COG3063 PilF Tfp pilus assembl 99.8 1.7E-18 3.7E-23 134.8 20.4 196 59-274 30-229 (250)
21 PRK11788 tetratricopeptide rep 99.8 9.4E-19 2E-23 156.2 21.4 226 40-285 83-315 (389)
22 PRK09782 bacteriophage N4 rece 99.8 1.6E-18 3.5E-23 167.2 20.9 197 67-285 512-710 (987)
23 TIGR02917 PEP_TPR_lipo putativ 99.8 1.7E-18 3.6E-23 170.1 21.5 218 40-282 649-867 (899)
24 TIGR02917 PEP_TPR_lipo putativ 99.8 2.5E-18 5.4E-23 168.8 21.3 200 62-281 463-664 (899)
25 PRK11447 cellulose synthase su 99.8 3.7E-18 8.1E-23 170.7 21.8 195 69-283 274-526 (1157)
26 COG3063 PilF Tfp pilus assembl 99.8 4E-18 8.6E-23 132.7 17.0 160 99-275 35-196 (250)
27 PRK11788 tetratricopeptide rep 99.8 5.9E-18 1.3E-22 151.1 20.5 219 40-282 49-279 (389)
28 PRK11447 cellulose synthase su 99.8 3.3E-18 7.2E-23 171.1 20.7 224 40-278 283-555 (1157)
29 PF13429 TPR_15: Tetratricopep 99.8 6E-19 1.3E-23 150.1 10.9 218 40-280 22-276 (280)
30 KOG2002 TPR-containing nuclear 99.8 1.8E-17 3.8E-22 152.0 18.6 222 42-282 146-372 (1018)
31 KOG1125 TPR repeat-containing 99.8 8.4E-18 1.8E-22 146.5 15.5 187 41-251 300-530 (579)
32 TIGR02521 type_IV_pilW type IV 99.8 7.4E-17 1.6E-21 133.0 19.1 186 41-250 46-234 (234)
33 KOG1129 TPR repeat-containing 99.8 1.4E-17 3.1E-22 135.7 12.5 202 64-283 256-460 (478)
34 TIGR03302 OM_YfiO outer membra 99.7 2.7E-16 5.9E-21 130.4 20.1 182 59-250 28-234 (235)
35 PLN02789 farnesyltranstransfer 99.7 2.9E-16 6.4E-21 134.0 20.6 200 62-279 35-248 (320)
36 PLN02789 farnesyltranstransfer 99.7 1.2E-15 2.6E-20 130.3 22.7 205 43-264 54-267 (320)
37 PRK11189 lipoprotein NlpI; Pro 99.7 3.7E-16 8E-21 133.5 18.3 185 42-253 80-270 (296)
38 PRK15359 type III secretion sy 99.7 3.9E-16 8.4E-21 118.5 15.0 126 85-232 13-139 (144)
39 PRK15359 type III secretion sy 99.7 7.8E-16 1.7E-20 116.8 15.7 129 118-267 12-141 (144)
40 KOG1173 Anaphase-promoting com 99.7 1.5E-15 3.3E-20 132.2 19.3 223 41-287 259-490 (611)
41 PF13429 TPR_15: Tetratricopep 99.7 3E-16 6.6E-21 133.5 13.3 184 40-248 91-277 (280)
42 KOG2076 RNA polymerase III tra 99.7 3E-15 6.4E-20 136.7 20.1 215 40-277 153-508 (895)
43 KOG0624 dsRNA-activated protei 99.7 1E-14 2.2E-19 120.0 19.0 210 61-283 35-254 (504)
44 KOG2003 TPR repeat-containing 99.7 1.1E-15 2.5E-20 129.9 13.7 219 40-281 433-655 (840)
45 PRK10049 pgaA outer membrane p 99.7 2.7E-14 5.9E-19 137.3 23.3 190 73-282 246-457 (765)
46 PRK10049 pgaA outer membrane p 99.7 2.3E-14 5E-19 137.8 22.6 200 40-262 251-470 (765)
47 KOG1129 TPR repeat-containing 99.7 6.1E-15 1.3E-19 120.6 15.1 197 62-279 221-422 (478)
48 KOG3060 Uncharacterized conser 99.6 1.7E-12 3.7E-17 102.8 27.7 191 62-272 50-245 (289)
49 TIGR00540 hemY_coli hemY prote 99.6 2.1E-14 4.6E-19 128.5 19.5 228 40-282 132-400 (409)
50 KOG2002 TPR-containing nuclear 99.6 2.6E-14 5.6E-19 131.6 20.1 209 64-284 496-748 (1018)
51 KOG1840 Kinesin light chain [C 99.6 3.6E-14 7.8E-19 126.7 20.3 222 42-284 222-482 (508)
52 KOG2003 TPR repeat-containing 99.6 2.2E-14 4.8E-19 122.1 16.9 194 62-266 488-708 (840)
53 KOG0548 Molecular co-chaperone 99.6 6E-14 1.3E-18 121.8 19.1 208 64-285 224-459 (539)
54 PRK10747 putative protoheme IX 99.6 5.7E-14 1.2E-18 125.1 19.6 190 69-281 158-390 (398)
55 PRK10370 formate-dependent nit 99.6 5.7E-14 1.2E-18 112.4 17.6 154 71-255 23-180 (198)
56 KOG0624 dsRNA-activated protei 99.6 4.5E-13 9.7E-18 110.5 22.5 185 59-255 67-259 (504)
57 KOG2076 RNA polymerase III tra 99.6 1.8E-13 3.8E-18 125.3 22.3 204 63-284 138-481 (895)
58 TIGR03302 OM_YfiO outer membra 99.6 1.2E-13 2.5E-18 114.6 19.6 174 94-278 28-229 (235)
59 PRK15179 Vi polysaccharide bio 99.6 1.8E-13 3.9E-18 127.9 22.6 151 84-253 71-222 (694)
60 KOG1840 Kinesin light chain [C 99.6 6.3E-14 1.4E-18 125.1 18.3 208 59-284 194-441 (508)
61 COG2956 Predicted N-acetylgluc 99.6 3E-13 6.6E-18 110.5 20.0 213 40-277 49-274 (389)
62 PRK10370 formate-dependent nit 99.6 4.1E-14 8.9E-19 113.1 14.6 121 77-213 52-174 (198)
63 COG2956 Predicted N-acetylgluc 99.6 5.2E-13 1.1E-17 109.2 20.5 216 40-275 83-305 (389)
64 KOG1174 Anaphase-promoting com 99.6 3.5E-13 7.5E-18 113.6 19.1 199 66-283 302-502 (564)
65 KOG0495 HAT repeat protein [RN 99.6 9.1E-13 2E-17 116.9 22.0 202 62-283 582-784 (913)
66 KOG1174 Anaphase-promoting com 99.6 2.5E-13 5.4E-18 114.4 16.7 205 34-262 308-515 (564)
67 KOG0550 Molecular chaperone (D 99.6 6.3E-14 1.4E-18 117.9 12.3 211 62-284 47-353 (486)
68 cd05804 StaR_like StaR_like; a 99.5 4.2E-13 9.1E-18 118.3 18.2 201 62-279 4-213 (355)
69 PRK14574 hmsH outer membrane p 99.5 6.5E-13 1.4E-17 126.4 20.2 191 61-274 31-225 (822)
70 COG5010 TadD Flp pilus assembl 99.5 5.9E-13 1.3E-17 106.3 16.6 154 68-241 70-224 (257)
71 TIGR02552 LcrH_SycD type III s 99.5 5.9E-13 1.3E-17 100.4 15.4 117 120-255 4-121 (135)
72 COG5010 TadD Flp pilus assembl 99.5 1.5E-12 3.2E-17 104.0 18.0 173 82-274 50-224 (257)
73 TIGR02552 LcrH_SycD type III s 99.5 8E-13 1.7E-17 99.7 14.9 117 86-221 4-121 (135)
74 KOG0495 HAT repeat protein [RN 99.5 3.7E-12 8E-17 113.1 20.4 217 40-279 632-878 (913)
75 KOG0550 Molecular chaperone (D 99.5 1.8E-12 3.8E-17 109.4 17.5 170 64-253 169-355 (486)
76 KOG4162 Predicted calmodulin-b 99.5 3.5E-12 7.6E-17 115.2 19.9 225 35-283 453-785 (799)
77 PRK15179 Vi polysaccharide bio 99.5 2E-12 4.3E-17 121.0 18.8 133 62-212 84-217 (694)
78 PRK10747 putative protoheme IX 99.5 3.9E-12 8.4E-17 113.4 19.1 218 40-284 98-360 (398)
79 KOG0553 TPR repeat-containing 99.5 5.9E-13 1.3E-17 108.2 12.5 119 99-236 81-200 (304)
80 KOG0553 TPR repeat-containing 99.5 7.6E-13 1.6E-17 107.6 12.0 117 62-187 79-196 (304)
81 KOG1156 N-terminal acetyltrans 99.5 2.3E-12 5E-17 114.3 15.9 183 62-262 39-263 (700)
82 KOG0548 Molecular co-chaperone 99.5 6.3E-12 1.4E-16 109.4 18.0 184 62-265 262-473 (539)
83 PRK15363 pathogenicity island 99.4 5.8E-12 1.3E-16 94.1 14.6 104 92-212 27-132 (157)
84 PRK15363 pathogenicity island 99.4 7.7E-12 1.7E-16 93.5 14.5 109 126-253 27-137 (157)
85 KOG1127 TPR repeat-containing 99.4 5E-12 1.1E-16 116.9 15.5 180 65-264 493-676 (1238)
86 PF13525 YfiO: Outer membrane 99.4 4E-11 8.7E-16 96.6 19.1 180 61-269 2-195 (203)
87 cd05804 StaR_like StaR_like; a 99.4 2E-11 4.3E-16 107.7 18.4 168 63-251 42-218 (355)
88 COG4783 Putative Zn-dependent 99.4 8.2E-11 1.8E-15 101.7 21.1 141 96-255 303-444 (484)
89 KOG1128 Uncharacterized conser 99.4 1.6E-11 3.6E-16 110.4 16.9 199 65-284 399-619 (777)
90 PRK14574 hmsH outer membrane p 99.4 1.9E-11 4.1E-16 116.5 18.2 180 84-284 19-201 (822)
91 COG4783 Putative Zn-dependent 99.4 1.4E-10 3E-15 100.4 21.0 155 62-253 304-459 (484)
92 KOG1127 TPR repeat-containing 99.4 2.1E-11 4.6E-16 112.9 16.4 180 82-280 475-658 (1238)
93 PF12569 NARP1: NMDA receptor- 99.4 1.6E-10 3.5E-15 104.6 21.9 218 40-273 18-283 (517)
94 KOG1130 Predicted G-alpha GTPa 99.4 2.5E-12 5.3E-17 108.6 9.0 214 60-283 51-306 (639)
95 KOG1156 N-terminal acetyltrans 99.4 1.5E-10 3.3E-15 103.0 20.2 167 63-249 6-173 (700)
96 PLN03088 SGT1, suppressor of 99.3 2.2E-11 4.8E-16 106.6 13.8 112 67-187 5-117 (356)
97 TIGR00540 hemY_coli hemY prote 99.3 3.3E-10 7.2E-15 101.6 21.7 168 67-254 121-298 (409)
98 KOG3060 Uncharacterized conser 99.3 1.2E-09 2.5E-14 87.0 20.9 171 94-283 47-222 (289)
99 KOG1130 Predicted G-alpha GTPa 99.3 1E-11 2.2E-16 105.0 9.3 205 63-285 94-348 (639)
100 PRK10866 outer membrane biogen 99.3 4.9E-10 1.1E-14 92.5 19.3 112 62-174 30-158 (243)
101 PLN03088 SGT1, suppressor of 99.3 6.1E-11 1.3E-15 103.8 14.1 113 136-267 6-119 (356)
102 PF12569 NARP1: NMDA receptor- 99.3 1.4E-09 3.1E-14 98.6 23.2 131 134-283 196-336 (517)
103 PF13414 TPR_11: TPR repeat; P 99.3 1.2E-11 2.6E-16 81.4 7.0 67 63-130 2-69 (69)
104 KOG4162 Predicted calmodulin-b 99.3 1E-10 2.2E-15 105.9 14.5 139 64-220 650-789 (799)
105 PRK14720 transcript cleavage f 99.3 1.4E-10 3E-15 109.9 15.5 202 59-284 26-286 (906)
106 PF14938 SNAP: Soluble NSF att 99.2 2.3E-10 5E-15 97.2 14.6 209 61-287 32-272 (282)
107 COG3071 HemY Uncharacterized e 99.2 2.7E-09 5.8E-14 90.2 20.4 81 197-279 308-388 (400)
108 KOG1128 Uncharacterized conser 99.2 1.3E-09 2.9E-14 98.4 19.0 169 96-282 395-583 (777)
109 PF13414 TPR_11: TPR repeat; P 99.2 5.4E-11 1.2E-15 78.3 7.8 67 173-250 2-69 (69)
110 PRK10153 DNA-binding transcrip 99.2 9.6E-10 2.1E-14 100.2 18.2 149 95-255 333-489 (517)
111 PF04733 Coatomer_E: Coatomer 99.2 4.9E-10 1.1E-14 94.8 14.8 168 64-255 102-272 (290)
112 COG4785 NlpI Lipoprotein NlpI, 99.2 3.3E-09 7.1E-14 82.5 17.3 108 59-175 60-168 (297)
113 COG4235 Cytochrome c biogenesi 99.2 4.7E-10 1E-14 92.1 13.2 118 82-213 139-257 (287)
114 PLN03218 maturation of RBCL 1; 99.2 4.8E-09 1E-13 103.0 22.5 164 64-247 507-677 (1060)
115 PRK14720 transcript cleavage f 99.2 3.3E-09 7.1E-14 100.7 20.1 143 93-248 25-178 (906)
116 TIGR02795 tol_pal_ybgF tol-pal 99.2 5.2E-10 1.1E-14 82.1 12.0 105 64-177 2-113 (119)
117 PRK11906 transcriptional regul 99.2 2.1E-09 4.6E-14 93.6 16.9 164 103-277 259-432 (458)
118 PRK02603 photosystem I assembl 99.2 7.2E-10 1.6E-14 87.1 12.1 116 98-252 34-153 (172)
119 cd00189 TPR Tetratricopeptide 99.1 1.5E-09 3.3E-14 75.6 12.5 99 134-251 2-100 (100)
120 CHL00033 ycf3 photosystem I as 99.1 1.2E-09 2.7E-14 85.4 13.1 98 82-187 16-119 (168)
121 PRK02603 photosystem I assembl 99.1 2E-09 4.4E-14 84.5 14.0 113 60-173 31-153 (172)
122 PLN03218 maturation of RBCL 1; 99.1 1.6E-08 3.5E-13 99.4 23.2 195 66-279 581-781 (1060)
123 PF13432 TPR_16: Tetratricopep 99.1 2.4E-10 5.2E-15 74.2 7.3 64 68-132 1-64 (65)
124 cd00189 TPR Tetratricopeptide 99.1 1.2E-09 2.5E-14 76.2 11.5 98 66-172 2-100 (100)
125 COG4235 Cytochrome c biogenesi 99.1 8.1E-09 1.8E-13 84.9 16.0 125 115-255 138-263 (287)
126 PRK11906 transcriptional regul 99.1 5.6E-09 1.2E-13 91.0 15.9 163 66-247 257-435 (458)
127 CHL00033 ycf3 photosystem I as 99.1 3.2E-09 7E-14 83.1 13.3 122 113-253 13-154 (168)
128 PLN03081 pentatricopeptide (PP 99.1 2.9E-09 6.3E-14 102.2 15.6 185 69-278 365-554 (697)
129 TIGR02795 tol_pal_ybgF tol-pal 99.1 3.1E-09 6.7E-14 77.9 12.4 104 99-221 2-112 (119)
130 PRK10866 outer membrane biogen 99.1 3.2E-08 6.9E-13 81.8 19.2 167 97-273 30-233 (243)
131 PF09976 TPR_21: Tetratricopep 99.1 8.7E-09 1.9E-13 78.5 14.6 124 68-210 15-145 (145)
132 KOG2376 Signal recognition par 99.0 1.9E-08 4.1E-13 89.0 17.3 188 74-282 22-254 (652)
133 PLN03081 pentatricopeptide (PP 99.0 2.2E-08 4.7E-13 96.2 19.5 209 40-277 273-487 (697)
134 PRK10153 DNA-binding transcrip 99.0 8.2E-09 1.8E-13 94.2 15.7 139 62-221 337-489 (517)
135 PF13432 TPR_16: Tetratricopep 99.0 1.1E-09 2.5E-14 70.9 7.3 65 178-253 1-65 (65)
136 KOG4648 Uncharacterized conser 99.0 6.1E-10 1.3E-14 92.3 6.9 211 67-289 100-338 (536)
137 KOG1941 Acetylcholine receptor 99.0 9.7E-08 2.1E-12 80.0 19.6 204 32-255 53-282 (518)
138 PF12895 Apc3: Anaphase-promot 99.0 6.3E-10 1.4E-14 76.2 5.8 80 154-245 3-84 (84)
139 PF12688 TPR_5: Tetratrico pep 99.0 9.7E-09 2.1E-13 74.4 12.2 95 100-211 2-103 (120)
140 PRK15331 chaperone protein Sic 99.0 1.6E-08 3.4E-13 76.2 13.2 101 94-211 32-133 (165)
141 PRK10803 tol-pal system protei 99.0 1.1E-08 2.4E-13 85.1 13.4 104 64-176 142-253 (263)
142 PF09976 TPR_21: Tetratricopep 99.0 2.5E-08 5.4E-13 75.9 14.2 117 110-246 22-145 (145)
143 PRK15331 chaperone protein Sic 99.0 2.7E-08 5.8E-13 75.0 13.3 101 133-253 38-138 (165)
144 PF12895 Apc3: Anaphase-promot 99.0 2E-09 4.4E-14 73.7 6.7 80 77-166 2-84 (84)
145 COG4105 ComL DNA uptake lipopr 99.0 3.4E-07 7.4E-12 73.9 19.9 170 61-242 31-227 (254)
146 KOG3785 Uncharacterized conser 99.0 4.7E-08 1E-12 81.7 15.2 163 66-255 59-221 (557)
147 KOG4340 Uncharacterized conser 98.9 3.2E-08 6.9E-13 80.8 13.1 164 78-253 24-216 (459)
148 KOG0543 FKBP-type peptidyl-pro 98.9 5.9E-08 1.3E-12 82.8 15.2 136 99-271 208-344 (397)
149 KOG0543 FKBP-type peptidyl-pro 98.9 5.8E-08 1.3E-12 82.8 14.7 130 64-211 208-354 (397)
150 PF04733 Coatomer_E: Coatomer 98.9 1.1E-08 2.3E-13 86.7 9.9 185 67-273 69-256 (290)
151 PLN03077 Protein ECB2; Provisi 98.9 2.1E-07 4.6E-12 91.6 20.2 178 72-275 532-714 (857)
152 KOG1586 Protein required for f 98.9 1.4E-06 3E-11 68.9 19.8 213 62-287 32-271 (288)
153 KOG4340 Uncharacterized conser 98.8 6.1E-08 1.3E-12 79.2 11.8 159 39-220 23-214 (459)
154 PLN03077 Protein ECB2; Provisi 98.8 3.7E-07 8E-12 89.9 19.7 116 108-244 533-650 (857)
155 PF13512 TPR_18: Tetratricopep 98.8 1.4E-07 3E-12 69.6 12.0 116 60-176 6-135 (142)
156 PF14559 TPR_19: Tetratricopep 98.8 1.9E-08 4.1E-13 65.8 6.6 64 75-139 2-66 (68)
157 COG0457 NrfG FOG: TPR repeat [ 98.8 2.4E-06 5.2E-11 69.7 20.5 200 64-283 59-267 (291)
158 KOG3785 Uncharacterized conser 98.8 7.8E-07 1.7E-11 74.6 16.9 171 74-272 32-205 (557)
159 PRK10803 tol-pal system protei 98.8 1.9E-07 4.2E-12 77.8 13.4 106 133-255 143-253 (263)
160 COG3071 HemY Uncharacterized e 98.8 6.2E-06 1.3E-10 70.2 21.9 69 218-286 262-362 (400)
161 PF12688 TPR_5: Tetratrico pep 98.8 3.7E-07 8E-12 66.2 12.7 95 65-168 2-103 (120)
162 COG1729 Uncharacterized protei 98.8 1.4E-07 3E-12 76.8 11.4 103 67-178 144-253 (262)
163 PF13371 TPR_9: Tetratricopept 98.8 4.8E-08 1E-12 64.8 7.4 61 71-132 2-62 (73)
164 COG4700 Uncharacterized protei 98.7 1.8E-06 3.8E-11 66.0 16.3 151 107-274 64-215 (251)
165 KOG2376 Signal recognition par 98.7 1.6E-06 3.5E-11 77.2 18.5 160 68-253 83-258 (652)
166 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 2.9E-07 6.4E-12 80.7 13.6 119 70-209 175-294 (395)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.8E-07 8.2E-12 80.0 14.1 121 105-246 175-295 (395)
168 PF06552 TOM20_plant: Plant sp 98.7 4.3E-07 9.4E-12 69.2 11.8 73 115-187 7-82 (186)
169 PF13424 TPR_12: Tetratricopep 98.7 2.9E-08 6.3E-13 66.9 5.0 68 61-129 2-76 (78)
170 PF13371 TPR_9: Tetratricopept 98.7 1.1E-07 2.4E-12 63.1 7.4 64 181-255 2-65 (73)
171 PRK04841 transcriptional regul 98.7 2.5E-06 5.4E-11 84.8 19.5 200 65-282 410-642 (903)
172 PF14938 SNAP: Soluble NSF att 98.7 1.2E-06 2.6E-11 74.5 14.8 183 40-248 56-266 (282)
173 PF06552 TOM20_plant: Plant sp 98.7 3.2E-07 7E-12 69.8 9.9 102 82-183 8-123 (186)
174 COG0457 NrfG FOG: TPR repeat [ 98.6 7.8E-06 1.7E-10 66.6 18.9 171 61-251 92-268 (291)
175 PF14559 TPR_19: Tetratricopep 98.6 1.4E-07 3E-12 61.6 6.6 57 197-255 5-61 (68)
176 PF13525 YfiO: Outer membrane 98.6 7.6E-06 1.6E-10 66.0 18.1 141 59-239 37-198 (203)
177 PF13424 TPR_12: Tetratricopep 98.6 6.3E-08 1.4E-12 65.2 5.0 70 171-249 2-76 (78)
178 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 1.5E-07 3.3E-12 82.1 8.1 69 169-248 70-141 (453)
179 KOG1941 Acetylcholine receptor 98.6 4.7E-06 1E-10 70.1 16.3 205 62-284 41-278 (518)
180 COG4785 NlpI Lipoprotein NlpI, 98.6 4.9E-07 1.1E-11 70.7 9.7 116 133-267 66-182 (297)
181 COG4105 ComL DNA uptake lipopr 98.6 1.6E-05 3.6E-10 64.3 18.7 163 98-271 33-223 (254)
182 KOG4234 TPR repeat-containing 98.6 2E-06 4.3E-11 66.5 12.0 73 197-271 148-221 (271)
183 PLN03098 LPA1 LOW PSII ACCUMUL 98.6 2.5E-07 5.4E-12 80.8 8.1 70 59-129 70-142 (453)
184 KOG4234 TPR repeat-containing 98.5 2.4E-06 5.2E-11 66.0 12.2 100 179-289 100-205 (271)
185 PRK04841 transcriptional regul 98.5 1.2E-05 2.6E-10 79.9 20.7 202 62-283 529-762 (903)
186 KOG3081 Vesicle coat complex C 98.5 0.00014 3E-09 59.1 21.8 157 100-277 109-266 (299)
187 KOG1915 Cell cycle control pro 98.5 2.6E-05 5.6E-10 68.1 18.6 159 76-253 378-541 (677)
188 KOG4648 Uncharacterized conser 98.5 1.1E-06 2.3E-11 73.5 9.6 103 102-223 100-203 (536)
189 KOG2047 mRNA splicing factor [ 98.5 7.2E-05 1.6E-09 67.7 21.4 202 60-279 383-613 (835)
190 KOG3081 Vesicle coat complex C 98.5 4.7E-05 1E-09 61.7 18.2 168 66-255 110-278 (299)
191 KOG1915 Cell cycle control pro 98.4 0.00018 3.8E-09 63.1 22.3 194 59-272 399-609 (677)
192 KOG4555 TPR repeat-containing 98.4 5.6E-06 1.2E-10 59.4 11.0 101 64-173 43-148 (175)
193 KOG2796 Uncharacterized conser 98.4 5.1E-05 1.1E-09 61.4 17.3 147 64-228 177-332 (366)
194 PF13512 TPR_18: Tetratricopep 98.4 9.8E-06 2.1E-10 59.9 12.4 104 133-255 11-135 (142)
195 COG1729 Uncharacterized protei 98.4 6.5E-06 1.4E-10 67.2 12.1 103 101-222 143-252 (262)
196 COG4700 Uncharacterized protei 98.3 9.4E-05 2E-09 56.8 15.4 145 38-210 72-220 (251)
197 KOG4642 Chaperone-dependent E3 98.3 2.4E-06 5.2E-11 67.8 6.7 96 65-169 11-107 (284)
198 KOG1070 rRNA processing protei 98.3 8.3E-05 1.8E-09 72.7 18.1 201 60-280 1454-1662(1710)
199 KOG4555 TPR repeat-containing 98.2 7.8E-06 1.7E-10 58.7 7.9 91 154-253 57-149 (175)
200 PF13431 TPR_17: Tetratricopep 98.2 1.1E-06 2.4E-11 48.3 2.8 33 87-119 1-33 (34)
201 KOG1585 Protein required for f 98.2 0.00023 5E-09 57.1 16.2 173 59-250 26-221 (308)
202 PF00515 TPR_1: Tetratricopept 98.2 4.2E-06 9.2E-11 46.1 4.7 34 99-132 1-34 (34)
203 PF05843 Suf: Suppressor of fo 98.2 5E-05 1.1E-09 64.4 13.0 135 101-253 3-141 (280)
204 PF13428 TPR_14: Tetratricopep 98.2 4E-06 8.8E-11 49.2 4.3 41 66-107 3-43 (44)
205 KOG2796 Uncharacterized conser 98.2 6.7E-05 1.4E-09 60.7 12.3 135 101-254 179-321 (366)
206 PF13428 TPR_14: Tetratricopep 98.2 4.8E-06 1E-10 48.9 4.6 42 99-140 1-43 (44)
207 KOG0376 Serine-threonine phosp 98.1 6.7E-06 1.4E-10 71.9 7.1 109 68-185 8-117 (476)
208 PF00515 TPR_1: Tetratricopept 98.1 4.6E-06 1E-10 45.9 3.9 34 219-252 1-34 (34)
209 KOG1070 rRNA processing protei 98.1 0.00043 9.4E-09 68.0 19.1 197 34-254 1470-1669(1710)
210 KOG2053 Mitochondrial inherita 98.1 0.00078 1.7E-08 63.4 19.6 100 38-146 25-124 (932)
211 KOG2047 mRNA splicing factor [ 98.1 0.0017 3.6E-08 59.2 21.0 171 62-254 347-546 (835)
212 PF07719 TPR_2: Tetratricopept 98.1 9E-06 2E-10 44.7 4.6 34 99-132 1-34 (34)
213 PF07719 TPR_2: Tetratricopept 98.1 9.7E-06 2.1E-10 44.6 4.5 34 219-252 1-34 (34)
214 KOG4642 Chaperone-dependent E3 98.0 2.2E-05 4.8E-10 62.5 7.4 85 153-248 23-107 (284)
215 KOG2610 Uncharacterized conser 98.0 0.00026 5.6E-09 59.4 13.7 157 73-247 112-275 (491)
216 PF04184 ST7: ST7 protein; In 98.0 0.00027 5.8E-09 62.5 14.5 157 77-254 181-381 (539)
217 KOG2053 Mitochondrial inherita 98.0 0.00065 1.4E-08 63.9 17.6 102 76-187 21-123 (932)
218 KOG0376 Serine-threonine phosp 98.0 2.5E-05 5.5E-10 68.4 7.8 108 154-272 18-128 (476)
219 PF13431 TPR_17: Tetratricopep 98.0 4E-06 8.7E-11 46.0 1.8 33 162-203 1-33 (34)
220 COG3118 Thioredoxin domain-con 98.0 0.00081 1.8E-08 55.7 15.8 147 68-233 138-286 (304)
221 PF13281 DUF4071: Domain of un 97.9 0.0098 2.1E-07 51.9 21.9 179 64-253 141-339 (374)
222 KOG3617 WD40 and TPR repeat-co 97.9 0.0029 6.2E-08 59.4 19.1 214 38-287 838-1115(1416)
223 PF10300 DUF3808: Protein of u 97.9 0.00059 1.3E-08 62.2 14.7 163 111-283 200-378 (468)
224 KOG0551 Hsp90 co-chaperone CNS 97.8 0.0003 6.5E-09 58.9 10.9 105 59-172 76-185 (390)
225 PF05843 Suf: Suppressor of fo 97.8 0.001 2.2E-08 56.5 14.1 129 66-212 3-136 (280)
226 KOG0551 Hsp90 co-chaperone CNS 97.8 0.0046 9.9E-08 52.1 17.2 96 99-211 81-181 (390)
227 KOG1586 Protein required for f 97.7 0.0058 1.3E-07 48.9 16.3 145 78-254 28-189 (288)
228 KOG2471 TPR repeat-containing 97.7 0.00032 6.8E-09 61.7 9.9 138 74-231 216-381 (696)
229 KOG0545 Aryl-hydrocarbon recep 97.7 0.0003 6.6E-09 56.4 8.9 110 175-293 179-305 (329)
230 PF13281 DUF4071: Domain of un 97.7 0.0056 1.2E-07 53.4 17.3 163 40-213 155-335 (374)
231 KOG3617 WD40 and TPR repeat-co 97.7 0.0022 4.7E-08 60.2 15.4 214 40-292 742-1007(1416)
232 PF13181 TPR_8: Tetratricopept 97.7 8E-05 1.7E-09 40.8 3.9 32 100-131 2-33 (34)
233 KOG0545 Aryl-hydrocarbon recep 97.7 0.0013 2.9E-08 52.8 11.8 104 133-255 179-300 (329)
234 KOG1585 Protein required for f 97.7 0.0042 9.1E-08 50.1 14.5 171 99-277 31-215 (308)
235 PF13181 TPR_8: Tetratricopept 97.6 8.8E-05 1.9E-09 40.6 3.6 33 220-252 2-34 (34)
236 COG3898 Uncharacterized membra 97.6 0.024 5.1E-07 49.0 19.4 201 37-253 131-363 (531)
237 KOG1550 Extracellular protein 97.6 0.011 2.3E-07 55.4 18.5 150 82-249 229-394 (552)
238 COG0790 FOG: TPR repeat, SEL1 97.6 0.016 3.5E-07 49.6 18.3 172 65-252 74-270 (292)
239 KOG2471 TPR repeat-containing 97.5 0.00031 6.7E-09 61.8 6.3 118 61-187 237-382 (696)
240 PF10300 DUF3808: Protein of u 97.4 0.0027 5.9E-08 57.9 12.5 114 81-211 249-375 (468)
241 KOG1308 Hsp70-interacting prot 97.4 7E-05 1.5E-09 62.9 2.1 108 154-272 128-235 (377)
242 PF04184 ST7: ST7 protein; In 97.4 0.0073 1.6E-07 53.8 14.0 124 103-245 172-321 (539)
243 KOG2300 Uncharacterized conser 97.4 0.046 1E-06 48.6 18.4 194 37-251 293-517 (629)
244 COG3898 Uncharacterized membra 97.3 0.043 9.3E-07 47.5 17.3 202 62-284 118-324 (531)
245 COG2976 Uncharacterized protei 97.3 0.029 6.2E-07 43.8 14.7 91 152-254 101-194 (207)
246 PF13174 TPR_6: Tetratricopept 97.3 0.00048 1E-08 37.3 3.8 33 100-132 1-33 (33)
247 PF13174 TPR_6: Tetratricopept 97.3 0.00065 1.4E-08 36.7 4.3 33 220-252 1-33 (33)
248 KOG4507 Uncharacterized conser 97.3 0.0013 2.8E-08 59.3 8.2 105 107-230 615-721 (886)
249 PF13176 TPR_7: Tetratricopept 97.3 0.00057 1.2E-08 38.0 3.9 28 101-128 1-28 (36)
250 PF04781 DUF627: Protein of un 97.2 0.01 2.2E-07 41.8 10.5 98 106-212 3-107 (111)
251 PF04910 Tcf25: Transcriptiona 97.2 0.027 5.9E-07 49.5 15.7 146 91-252 32-226 (360)
252 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0028 6E-08 38.5 6.6 40 220-259 2-41 (53)
253 PF13176 TPR_7: Tetratricopept 97.2 0.00031 6.7E-09 39.1 2.2 29 221-249 1-29 (36)
254 KOG4507 Uncharacterized conser 97.2 0.006 1.3E-07 55.2 11.0 134 120-271 200-336 (886)
255 KOG3364 Membrane protein invol 97.2 0.019 4.2E-07 41.9 11.6 81 173-259 31-111 (149)
256 COG0790 FOG: TPR repeat, SEL1 97.0 0.086 1.9E-06 45.1 17.1 178 72-266 49-236 (292)
257 KOG0530 Protein farnesyltransf 97.0 0.071 1.5E-06 43.7 15.0 163 81-262 59-231 (318)
258 KOG2610 Uncharacterized conser 97.0 0.023 5.1E-07 48.1 12.5 157 102-277 106-272 (491)
259 PF03704 BTAD: Bacterial trans 97.0 0.022 4.9E-07 43.1 11.8 61 134-211 64-124 (146)
260 KOG0530 Protein farnesyltransf 97.0 0.05 1.1E-06 44.5 13.8 141 78-254 40-182 (318)
261 KOG1308 Hsp70-interacting prot 97.0 0.00041 9E-09 58.4 2.2 92 71-171 121-213 (377)
262 COG2976 Uncharacterized protei 97.0 0.018 3.8E-07 45.0 10.8 101 64-173 89-192 (207)
263 smart00028 TPR Tetratricopepti 96.9 0.0023 5E-08 33.8 4.3 33 220-252 2-34 (34)
264 COG3118 Thioredoxin domain-con 96.8 0.04 8.7E-07 46.0 12.5 152 99-274 134-294 (304)
265 PF03704 BTAD: Bacterial trans 96.8 0.0067 1.5E-07 46.0 7.7 63 64-127 62-124 (146)
266 PF02259 FAT: FAT domain; Int 96.8 0.051 1.1E-06 47.8 14.3 128 59-187 141-305 (352)
267 PF08424 NRDE-2: NRDE-2, neces 96.8 0.13 2.8E-06 44.7 16.2 152 86-251 6-186 (321)
268 smart00028 TPR Tetratricopepti 96.8 0.0024 5.2E-08 33.7 3.8 32 100-131 2-33 (34)
269 PF12968 DUF3856: Domain of Un 96.7 0.066 1.4E-06 38.2 10.9 100 134-248 9-129 (144)
270 PF14561 TPR_20: Tetratricopep 96.7 0.017 3.7E-07 39.6 8.0 64 83-146 6-72 (90)
271 PF10345 Cohesin_load: Cohesin 96.6 0.27 5.8E-06 46.9 17.9 161 34-211 29-207 (608)
272 KOG1550 Extracellular protein 96.6 0.19 4E-06 47.2 16.5 183 42-248 228-426 (552)
273 COG4976 Predicted methyltransf 96.5 0.0064 1.4E-07 48.6 5.6 59 73-132 4-62 (287)
274 KOG1914 mRNA cleavage and poly 96.5 0.31 6.7E-06 44.2 16.5 46 84-129 264-323 (656)
275 PF08631 SPO22: Meiosis protei 96.5 0.39 8.4E-06 40.8 16.6 122 75-211 4-149 (278)
276 PF14853 Fis1_TPR_C: Fis1 C-te 96.4 0.022 4.8E-07 34.5 6.4 33 100-132 2-34 (53)
277 KOG0985 Vesicle coat protein c 96.4 0.79 1.7E-05 45.0 19.4 202 62-286 1102-1349(1666)
278 KOG3824 Huntingtin interacting 96.4 0.011 2.3E-07 49.4 6.6 72 68-140 120-192 (472)
279 KOG3824 Huntingtin interacting 96.4 0.015 3.2E-07 48.6 7.1 64 197-262 130-194 (472)
280 PRK10941 hypothetical protein; 96.4 0.041 8.8E-07 46.1 9.9 75 176-261 183-257 (269)
281 PF14561 TPR_20: Tetratricopep 96.3 0.051 1.1E-06 37.3 8.4 72 203-276 8-82 (90)
282 KOG2300 Uncharacterized conser 96.3 0.14 3E-06 45.7 12.7 129 99-244 7-152 (629)
283 PF09986 DUF2225: Uncharacteri 96.2 0.33 7E-06 39.4 14.0 82 59-140 113-208 (214)
284 PRK13184 pknD serine/threonine 96.1 0.14 3E-06 50.5 13.2 108 152-264 487-598 (932)
285 PF12968 DUF3856: Domain of Un 96.1 0.075 1.6E-06 37.9 8.2 87 197-283 23-131 (144)
286 KOG2422 Uncharacterized conser 96.1 0.52 1.1E-05 43.2 15.4 159 78-250 252-450 (665)
287 KOG2041 WD40 repeat protein [G 96.0 0.55 1.2E-05 44.0 15.6 29 216-244 849-877 (1189)
288 PF08631 SPO22: Meiosis protei 96.0 0.85 1.8E-05 38.8 23.8 224 13-246 32-273 (278)
289 COG2909 MalT ATP-dependent tra 95.9 1 2.3E-05 43.4 17.6 175 62-252 456-651 (894)
290 PF04781 DUF627: Protein of un 95.9 0.2 4.3E-06 35.5 9.9 92 70-170 2-108 (111)
291 PRK10941 hypothetical protein; 95.9 0.096 2.1E-06 44.0 9.9 70 62-132 179-248 (269)
292 PF09986 DUF2225: Uncharacteri 95.9 0.19 4.1E-06 40.7 11.3 71 174-253 118-199 (214)
293 PF13374 TPR_10: Tetratricopep 95.7 0.024 5.2E-07 32.2 4.2 31 99-129 2-32 (42)
294 KOG4814 Uncharacterized conser 95.7 0.94 2E-05 42.1 15.8 93 102-211 357-456 (872)
295 KOG1914 mRNA cleavage and poly 95.7 1.6 3.5E-05 39.8 21.1 185 40-248 266-464 (656)
296 PF13374 TPR_10: Tetratricopep 95.7 0.022 4.8E-07 32.4 3.8 30 220-249 3-32 (42)
297 PF02259 FAT: FAT domain; Int 95.6 0.98 2.1E-05 39.6 15.7 66 95-168 142-212 (352)
298 KOG2396 HAT (Half-A-TPR) repea 95.5 0.15 3.3E-06 45.6 10.0 88 84-178 90-178 (568)
299 PF10602 RPN7: 26S proteasome 95.5 0.44 9.5E-06 37.4 11.8 101 61-170 33-143 (177)
300 PRK15180 Vi polysaccharide bio 95.5 0.3 6.5E-06 43.7 11.7 120 76-213 301-421 (831)
301 KOG2396 HAT (Half-A-TPR) repea 95.5 0.34 7.3E-06 43.6 11.8 89 156-255 87-176 (568)
302 COG2909 MalT ATP-dependent tra 95.4 2.8 6E-05 40.7 18.3 200 62-279 413-645 (894)
303 PF09613 HrpB1_HrpK: Bacterial 95.3 0.36 7.9E-06 36.7 10.2 85 62-147 8-93 (160)
304 KOG4014 Uncharacterized conser 95.3 1 2.2E-05 35.1 15.7 170 37-248 46-233 (248)
305 KOG3616 Selective LIM binding 95.3 1.3 2.7E-05 42.1 15.2 53 197-253 977-1029(1636)
306 PF10602 RPN7: 26S proteasome 95.3 0.35 7.6E-06 38.0 10.4 69 174-251 36-105 (177)
307 PRK13184 pknD serine/threonine 95.3 0.87 1.9E-05 45.2 15.1 137 105-254 481-626 (932)
308 PF08424 NRDE-2: NRDE-2, neces 95.2 1.1 2.4E-05 39.0 14.5 151 120-281 6-183 (321)
309 KOG1310 WD40 repeat protein [G 95.2 0.13 2.9E-06 46.3 8.4 85 113-211 388-473 (758)
310 PF12862 Apc5: Anaphase-promot 95.1 0.23 5.1E-06 34.3 8.0 71 197-267 12-89 (94)
311 KOG1839 Uncharacterized protei 95.0 0.52 1.1E-05 47.2 12.6 169 62-248 930-1128(1236)
312 PF07079 DUF1347: Protein of u 94.9 1.5 3.2E-05 39.2 13.8 45 197-244 476-520 (549)
313 KOG0529 Protein geranylgeranyl 94.9 2.6 5.6E-05 37.2 17.7 167 76-255 40-231 (421)
314 PF09613 HrpB1_HrpK: Bacterial 94.8 0.47 1E-05 36.1 9.5 101 155-268 25-125 (160)
315 KOG3364 Membrane protein invol 94.7 1.2 2.7E-05 32.8 11.4 77 129-221 29-107 (149)
316 KOG1310 WD40 repeat protein [G 94.7 0.25 5.4E-06 44.7 8.8 99 67-174 377-479 (758)
317 PF07720 TPR_3: Tetratricopept 94.6 0.14 3.1E-06 28.2 4.6 32 100-131 2-35 (36)
318 COG4649 Uncharacterized protei 94.4 1.8 3.9E-05 33.5 16.0 139 108-264 67-212 (221)
319 COG4976 Predicted methyltransf 94.4 0.089 1.9E-06 42.3 5.0 56 197-254 9-64 (287)
320 PF12862 Apc5: Anaphase-promot 94.4 0.18 3.8E-06 35.0 6.0 57 75-132 9-74 (94)
321 KOG4014 Uncharacterized conser 94.0 0.92 2E-05 35.3 9.4 52 232-285 181-237 (248)
322 PF10345 Cohesin_load: Cohesin 93.8 6.5 0.00014 37.6 20.7 234 37-278 319-603 (608)
323 PF07721 TPR_4: Tetratricopept 93.8 0.091 2E-06 26.5 2.7 25 219-243 1-25 (26)
324 PF07721 TPR_4: Tetratricopept 93.7 0.099 2.1E-06 26.3 2.8 24 100-123 2-25 (26)
325 KOG1464 COP9 signalosome, subu 93.7 3.4 7.4E-05 34.4 12.8 176 79-273 42-252 (440)
326 COG3914 Spy Predicted O-linked 93.5 4.3 9.3E-05 37.6 14.3 127 82-226 48-183 (620)
327 PF04910 Tcf25: Transcriptiona 93.5 4.8 0.0001 35.6 14.6 133 61-211 37-221 (360)
328 COG3914 Spy Predicted O-linked 93.4 6.3 0.00014 36.5 15.2 120 117-255 49-178 (620)
329 PF07720 TPR_3: Tetratricopept 93.4 0.27 5.9E-06 27.1 4.4 33 220-252 2-36 (36)
330 PF07079 DUF1347: Protein of u 93.4 5.7 0.00012 35.7 14.8 51 226-277 469-520 (549)
331 PF04053 Coatomer_WDAD: Coatom 93.2 3.7 8.1E-05 37.4 13.7 123 76-242 273-396 (443)
332 PF11207 DUF2989: Protein of u 93.1 0.53 1.1E-05 37.3 7.2 65 82-147 123-193 (203)
333 PF10373 EST1_DNA_bind: Est1 D 93.1 0.35 7.7E-06 40.9 6.9 62 159-231 1-62 (278)
334 PF10516 SHNi-TPR: SHNi-TPR; 93.1 0.19 4.2E-06 28.0 3.5 30 100-129 2-31 (38)
335 PF10579 Rapsyn_N: Rapsyn N-te 93.0 1.5 3.1E-05 29.0 7.8 61 223-283 10-74 (80)
336 KOG1463 26S proteasome regulat 92.9 5 0.00011 34.6 12.9 175 69-251 133-319 (411)
337 KOG1258 mRNA processing protei 92.8 8 0.00017 35.9 18.4 174 64-255 297-477 (577)
338 COG5107 RNA14 Pre-mRNA 3'-end 92.8 7.1 0.00015 35.1 15.6 192 64-283 302-526 (660)
339 COG3629 DnrI DNA-binding trans 92.8 0.63 1.4E-05 39.1 7.6 66 62-128 151-216 (280)
340 PF10516 SHNi-TPR: SHNi-TPR; 92.6 0.26 5.7E-06 27.5 3.6 30 220-249 2-31 (38)
341 PRK15180 Vi polysaccharide bio 92.6 1.9 4.1E-05 38.9 10.6 123 110-251 300-423 (831)
342 TIGR02561 HrpB1_HrpK type III 92.6 1.6 3.6E-05 32.7 8.7 78 69-147 15-93 (153)
343 PF10579 Rapsyn_N: Rapsyn N-te 92.5 1.3 2.9E-05 29.1 7.2 62 66-128 8-72 (80)
344 KOG0529 Protein geranylgeranyl 92.5 4.6 0.0001 35.7 12.6 143 82-230 92-240 (421)
345 PF10373 EST1_DNA_bind: Est1 D 92.4 0.59 1.3E-05 39.5 7.3 61 202-264 1-62 (278)
346 KOG0985 Vesicle coat protein c 92.3 13 0.00028 37.2 16.2 75 155-250 1090-1164(1666)
347 TIGR02561 HrpB1_HrpK type III 92.3 2.1 4.6E-05 32.2 9.0 71 155-236 25-95 (153)
348 COG5191 Uncharacterized conser 92.3 0.32 7E-06 41.0 5.2 85 87-179 95-181 (435)
349 KOG1839 Uncharacterized protei 92.2 2.3 5.1E-05 42.9 11.7 161 103-280 936-1120(1236)
350 COG5191 Uncharacterized conser 92.1 1.9 4.2E-05 36.5 9.5 82 163-255 96-178 (435)
351 PF15015 NYD-SP12_N: Spermatog 91.8 2.2 4.7E-05 37.8 9.8 58 222-279 231-289 (569)
352 COG3947 Response regulator con 91.8 2.4 5.3E-05 35.6 9.6 59 66-125 281-339 (361)
353 KOG4814 Uncharacterized conser 91.8 3.6 7.8E-05 38.5 11.5 84 154-248 368-457 (872)
354 KOG0890 Protein kinase of the 91.7 6.2 0.00014 42.6 14.5 143 60-211 1666-1832(2382)
355 COG2912 Uncharacterized conser 91.7 1.1 2.4E-05 37.2 7.7 70 62-132 179-248 (269)
356 COG5107 RNA14 Pre-mRNA 3'-end 91.5 10 0.00022 34.2 15.1 182 86-276 289-490 (660)
357 PF15015 NYD-SP12_N: Spermatog 90.7 3 6.4E-05 37.0 9.5 89 69-166 181-288 (569)
358 PF11207 DUF2989: Protein of u 90.5 7.7 0.00017 30.9 11.7 56 62-119 139-198 (203)
359 COG2912 Uncharacterized conser 89.9 2.9 6.3E-05 34.9 8.6 69 178-257 185-253 (269)
360 KOG3616 Selective LIM binding 89.7 20 0.00044 34.5 19.0 63 222-284 664-738 (1636)
361 PF00244 14-3-3: 14-3-3 protei 89.2 11 0.00025 31.0 15.1 177 67-247 4-197 (236)
362 KOG4279 Serine/threonine prote 89.0 14 0.00031 35.5 13.0 182 62-254 199-401 (1226)
363 KOG0686 COP9 signalosome, subu 88.7 16 0.00034 32.5 12.3 199 99-314 150-380 (466)
364 TIGR03504 FimV_Cterm FimV C-te 88.1 1.5 3.3E-05 25.3 4.2 25 223-247 3-27 (44)
365 COG1747 Uncharacterized N-term 87.8 22 0.00048 32.7 15.6 61 65-128 100-160 (711)
366 KOG2114 Vacuolar assembly/sort 87.6 19 0.00042 35.0 13.1 30 99-128 368-397 (933)
367 KOG2041 WD40 repeat protein [G 87.5 28 0.0006 33.4 14.5 83 99-209 796-878 (1189)
368 KOG3807 Predicted membrane pro 86.9 19 0.00042 31.1 15.2 59 101-169 186-245 (556)
369 PF11817 Foie-gras_1: Foie gra 86.0 7.9 0.00017 32.2 9.2 28 101-128 180-207 (247)
370 cd02680 MIT_calpain7_2 MIT: do 85.8 7.7 0.00017 25.5 7.0 33 199-248 3-35 (75)
371 PF09670 Cas_Cas02710: CRISPR- 85.2 27 0.00059 31.2 13.5 62 67-129 134-199 (379)
372 TIGR03504 FimV_Cterm FimV C-te 85.2 2.2 4.7E-05 24.7 3.8 26 103-128 3-28 (44)
373 PF10255 Paf67: RNA polymerase 85.1 11 0.00024 33.8 9.8 130 69-210 127-268 (404)
374 COG4649 Uncharacterized protei 85.0 16 0.00035 28.5 15.2 138 71-229 65-210 (221)
375 KOG4279 Serine/threonine prote 84.7 6.2 0.00013 37.8 8.3 109 98-212 200-316 (1226)
376 KOG3783 Uncharacterized conser 84.4 26 0.00056 32.4 11.9 73 59-132 444-524 (546)
377 KOG1258 mRNA processing protei 83.6 39 0.00084 31.7 16.8 124 98-240 296-421 (577)
378 KOG1538 Uncharacterized conser 83.5 41 0.00088 32.1 12.8 56 227-284 781-836 (1081)
379 COG3629 DnrI DNA-binding trans 82.8 6.8 0.00015 33.1 7.3 61 177-248 156-216 (280)
380 PF10255 Paf67: RNA polymerase 80.7 5.3 0.00012 35.7 6.3 61 179-248 127-193 (404)
381 PF09670 Cas_Cas02710: CRISPR- 80.5 43 0.00092 30.0 13.5 63 101-169 133-198 (379)
382 smart00386 HAT HAT (Half-A-TPR 80.5 4.4 9.5E-05 20.8 3.8 26 82-107 4-29 (33)
383 COG4455 ImpE Protein of avirul 80.4 9.9 0.00021 30.8 6.9 58 74-132 11-68 (273)
384 PF04053 Coatomer_WDAD: Coatom 80.4 47 0.001 30.4 12.8 102 110-247 272-375 (443)
385 smart00386 HAT HAT (Half-A-TPR 80.0 2.6 5.6E-05 21.7 2.7 29 155-183 2-30 (33)
386 PF12854 PPR_1: PPR repeat 79.9 5.7 0.00012 21.3 4.1 27 98-124 6-32 (34)
387 KOG3807 Predicted membrane pro 79.2 42 0.00091 29.1 17.1 96 82-187 201-324 (556)
388 PF12854 PPR_1: PPR repeat 78.5 5.4 0.00012 21.4 3.7 29 216-244 4-32 (34)
389 KOG0687 26S proteasome regulat 78.3 36 0.00078 29.5 9.9 99 99-211 104-209 (393)
390 PF11817 Foie-gras_1: Foie gra 78.2 24 0.00053 29.3 9.2 60 65-125 179-244 (247)
391 COG5159 RPN6 26S proteasome re 77.5 44 0.00095 28.4 17.6 93 104-211 130-234 (421)
392 KOG3783 Uncharacterized conser 76.8 64 0.0014 30.0 19.1 180 62-253 265-525 (546)
393 PF11846 DUF3366: Domain of un 74.7 14 0.0003 29.3 6.7 53 197-252 125-177 (193)
394 cd02679 MIT_spastin MIT: domai 74.1 7.7 0.00017 25.8 4.1 34 197-247 3-36 (79)
395 COG3947 Response regulator con 73.8 11 0.00024 31.9 5.8 57 223-279 283-340 (361)
396 KOG0276 Vesicle coat complex C 73.7 18 0.00038 34.0 7.5 112 101-244 616-746 (794)
397 cd02681 MIT_calpain7_1 MIT: do 73.4 7.4 0.00016 25.6 3.9 17 231-247 18-34 (76)
398 PF12739 TRAPPC-Trs85: ER-Golg 73.1 73 0.0016 28.9 14.0 66 101-166 210-288 (414)
399 PF12753 Nro1: Nuclear pore co 72.9 11 0.00025 33.2 6.0 96 13-110 48-159 (404)
400 KOG1464 COP9 signalosome, subu 72.5 58 0.0013 27.5 14.2 191 41-250 42-262 (440)
401 PF13041 PPR_2: PPR repeat fam 72.1 9.5 0.00021 22.4 4.0 35 174-217 3-37 (50)
402 smart00671 SEL1 Sel1-like repe 71.9 10 0.00022 20.1 3.8 29 100-128 2-34 (36)
403 PF14863 Alkyl_sulf_dimr: Alky 71.5 12 0.00025 28.1 5.1 45 68-113 74-118 (141)
404 cd02682 MIT_AAA_Arch MIT: doma 71.4 26 0.00056 23.0 6.8 20 156-175 29-48 (75)
405 COG4941 Predicted RNA polymera 71.3 70 0.0015 27.9 16.1 161 82-255 213-401 (415)
406 PF01535 PPR: PPR repeat; Int 71.0 8 0.00017 19.5 3.1 26 102-127 3-28 (31)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 70.4 40 0.00086 24.7 9.1 46 201-246 81-126 (126)
408 COG5536 BET4 Protein prenyltra 70.3 66 0.0014 27.2 10.4 176 69-255 36-229 (328)
409 COG5536 BET4 Protein prenyltra 69.6 69 0.0015 27.1 10.4 162 80-246 89-258 (328)
410 TIGR00756 PPR pentatricopeptid 69.4 12 0.00025 19.4 3.7 29 176-213 2-30 (35)
411 PRK15490 Vi polysaccharide bio 69.2 30 0.00065 32.6 8.2 79 38-123 20-98 (578)
412 PF08238 Sel1: Sel1 repeat; I 68.8 13 0.00028 20.1 3.9 29 100-128 2-37 (39)
413 KOG2581 26S proteasome regulat 68.3 90 0.002 28.0 13.9 127 110-253 137-281 (493)
414 KOG0546 HSP90 co-chaperone CPR 68.0 9.4 0.0002 33.1 4.4 72 62-134 273-344 (372)
415 PF14863 Alkyl_sulf_dimr: Alky 67.4 28 0.00061 26.1 6.3 56 217-272 68-124 (141)
416 cd02680 MIT_calpain7_2 MIT: do 67.3 9.9 0.00021 25.0 3.5 33 156-212 3-35 (75)
417 KOG4151 Myosin assembly protei 66.5 18 0.0004 34.8 6.3 103 67-178 56-165 (748)
418 PF11846 DUF3366: Domain of un 66.4 30 0.00064 27.4 6.9 50 82-132 128-177 (193)
419 PHA02537 M terminase endonucle 66.2 73 0.0016 26.2 11.4 44 222-265 172-224 (230)
420 PF13041 PPR_2: PPR repeat fam 65.5 25 0.00054 20.5 6.0 31 99-129 3-33 (50)
421 KOG2581 26S proteasome regulat 65.2 1E+02 0.0023 27.6 15.5 133 67-219 128-281 (493)
422 cd02682 MIT_AAA_Arch MIT: doma 65.1 37 0.00079 22.3 7.1 19 237-255 31-49 (75)
423 smart00299 CLH Clathrin heavy 65.1 53 0.0012 24.2 11.6 45 77-123 20-64 (140)
424 KOG2062 26S proteasome regulat 64.5 1.5E+02 0.0032 29.1 14.7 63 14-91 23-85 (929)
425 COG3014 Uncharacterized protei 63.9 1E+02 0.0022 27.0 14.6 27 101-127 127-153 (449)
426 PF10952 DUF2753: Protein of u 63.6 29 0.00064 25.3 5.4 59 67-126 4-77 (140)
427 PF04190 DUF410: Protein of un 62.3 94 0.002 26.1 13.6 104 135-248 52-170 (260)
428 COG1747 Uncharacterized N-term 62.0 1.4E+02 0.003 27.9 15.3 150 87-259 88-246 (711)
429 COG5091 SGT1 Suppressor of G2 60.4 87 0.0019 26.3 8.3 115 156-270 11-130 (368)
430 PF04212 MIT: MIT (microtubule 60.0 24 0.00053 22.4 4.4 23 105-127 11-33 (69)
431 KOG0889 Histone acetyltransfer 59.8 2.6E+02 0.0056 32.8 13.7 118 41-169 2790-2915(3550)
432 KOG2063 Vacuolar assembly/sort 59.6 2E+02 0.0043 29.0 14.6 174 66-247 506-712 (877)
433 PF12753 Nro1: Nuclear pore co 59.3 25 0.00053 31.3 5.4 45 82-128 335-391 (404)
434 KOG2114 Vacuolar assembly/sort 59.0 1.9E+02 0.0042 28.6 14.0 50 40-94 348-397 (933)
435 cd02683 MIT_1 MIT: domain cont 58.9 50 0.0011 21.8 7.8 12 200-211 4-15 (77)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 58.4 70 0.0015 23.4 10.9 85 33-126 40-126 (126)
437 KOG1538 Uncharacterized conser 58.3 1.4E+02 0.0031 28.7 10.2 45 197-246 787-831 (1081)
438 COG4455 ImpE Protein of avirul 58.2 1E+02 0.0022 25.2 9.0 57 197-255 15-71 (273)
439 PF09797 NatB_MDM20: N-acetylt 58.2 99 0.0021 27.4 9.3 47 154-209 197-243 (365)
440 smart00101 14_3_3 14-3-3 homol 57.6 1.1E+02 0.0024 25.4 18.8 177 68-247 5-199 (244)
441 KOG4521 Nuclear pore complex, 57.2 67 0.0015 32.9 8.3 40 99-138 920-959 (1480)
442 PF13812 PPR_3: Pentatricopept 56.7 27 0.00057 18.0 3.6 28 176-212 3-30 (34)
443 COG4259 Uncharacterized protei 56.7 66 0.0014 22.5 6.2 41 215-255 68-108 (121)
444 KOG0546 HSP90 co-chaperone CPR 56.1 13 0.00027 32.4 3.1 69 176-255 277-345 (372)
445 cd02679 MIT_spastin MIT: domai 55.8 24 0.00051 23.5 3.7 20 108-127 17-36 (79)
446 PF00244 14-3-3: 14-3-3 protei 54.7 1.2E+02 0.0026 25.0 15.5 165 102-278 4-195 (236)
447 PF02184 HAT: HAT (Half-A-TPR) 53.1 34 0.00075 18.2 3.3 26 114-139 2-27 (32)
448 KOG0276 Vesicle coat complex C 52.5 34 0.00074 32.2 5.3 97 156-272 623-728 (794)
449 PF10952 DUF2753: Protein of u 52.4 80 0.0017 23.1 6.1 91 177-277 4-111 (140)
450 KOG0686 COP9 signalosome, subu 52.0 1.8E+02 0.0039 26.2 14.3 159 63-245 149-330 (466)
451 KOG2422 Uncharacterized conser 51.6 2.2E+02 0.0048 27.0 15.3 163 112-283 251-450 (665)
452 PF09205 DUF1955: Domain of un 51.5 1E+02 0.0022 23.1 6.7 50 197-248 100-149 (161)
453 cd02681 MIT_calpain7_1 MIT: do 50.2 40 0.00087 22.2 4.1 18 110-127 17-34 (76)
454 KOG0739 AAA+-type ATPase [Post 49.5 1E+02 0.0022 26.7 7.2 13 156-168 7-19 (439)
455 PF09205 DUF1955: Domain of un 48.9 1.1E+02 0.0024 22.9 6.5 45 85-129 106-150 (161)
456 TIGR02710 CRISPR-associated pr 48.9 2E+02 0.0043 25.8 11.4 54 70-124 136-196 (380)
457 PF07219 HemY_N: HemY protein 48.6 85 0.0018 22.2 6.0 25 69-94 64-88 (108)
458 COG5187 RPN7 26S proteasome re 47.6 1.8E+02 0.0039 24.9 13.1 105 60-173 111-225 (412)
459 cd02683 MIT_1 MIT: domain cont 46.9 47 0.001 21.9 4.1 15 111-125 18-32 (77)
460 PF02064 MAS20: MAS20 protein 46.9 43 0.00093 24.4 4.2 32 223-254 67-98 (121)
461 COG5187 RPN7 26S proteasome re 46.1 1.9E+02 0.0042 24.8 13.0 113 82-211 92-220 (412)
462 PF04212 MIT: MIT (microtubule 45.7 77 0.0017 20.1 7.0 17 231-247 17-33 (69)
463 TIGR02710 CRISPR-associated pr 45.2 2.3E+02 0.005 25.4 12.6 55 105-165 136-196 (380)
464 KOG0890 Protein kinase of the 45.2 5.1E+02 0.011 29.4 24.6 64 172-248 1668-1731(2382)
465 cd00280 TRFH Telomeric Repeat 44.3 89 0.0019 24.7 5.7 20 73-93 120-139 (200)
466 PF02064 MAS20: MAS20 protein 44.2 69 0.0015 23.3 4.9 30 103-132 67-96 (121)
467 KOG1497 COP9 signalosome, subu 43.9 2.2E+02 0.0048 24.8 9.8 93 175-277 104-209 (399)
468 PF05053 Menin: Menin; InterP 43.7 1.5E+02 0.0033 27.9 7.9 52 200-251 296-350 (618)
469 KOG4151 Myosin assembly protei 42.8 1.9E+02 0.0041 28.3 8.7 90 156-254 69-162 (748)
470 cd00280 TRFH Telomeric Repeat 41.3 53 0.0012 25.9 4.2 52 224-276 116-168 (200)
471 KOG1497 COP9 signalosome, subu 39.9 2.6E+02 0.0056 24.4 11.5 101 61-167 100-211 (399)
472 KOG2561 Adaptor protein NUB1, 39.3 3E+02 0.0066 25.2 9.1 102 101-211 165-295 (568)
473 COG5116 RPN2 26S proteasome re 38.9 3.5E+02 0.0077 25.8 13.9 68 11-93 20-87 (926)
474 KOG1920 IkappaB kinase complex 37.8 5E+02 0.011 27.2 14.9 19 35-53 889-907 (1265)
475 PF04348 LppC: LppC putative l 36.8 11 0.00025 35.3 0.0 87 59-146 19-112 (536)
476 smart00777 Mad3_BUB1_I Mad3/BU 34.8 1.8E+02 0.004 21.3 7.0 44 201-244 81-124 (125)
477 KOG0687 26S proteasome regulat 33.4 3.3E+02 0.0072 23.9 12.9 103 61-172 101-213 (393)
478 PF14929 TAF1_subA: TAF RNA Po 33.1 4.3E+02 0.0094 25.1 11.8 114 113-246 323-439 (547)
479 PF05053 Menin: Menin; InterP 33.0 3.3E+02 0.0071 25.8 8.4 47 82-128 296-347 (618)
480 KOG3677 RNA polymerase I-assoc 32.4 3.2E+02 0.0068 24.9 7.9 101 74-186 245-355 (525)
481 PF13226 DUF4034: Domain of un 32.2 3.2E+02 0.0069 23.3 10.5 68 118-185 62-144 (277)
482 KOG0889 Histone acetyltransfer 32.2 7.4E+02 0.016 29.6 11.9 86 99-185 2812-2898(3550)
483 KOG0739 AAA+-type ATPase [Post 32.1 3.4E+02 0.0074 23.6 8.2 66 197-272 5-72 (439)
484 PF04097 Nic96: Nup93/Nic96; 31.6 2.6E+02 0.0056 27.0 8.1 165 105-288 264-450 (613)
485 PF04190 DUF410: Protein of un 30.1 3.3E+02 0.0072 22.8 15.2 142 38-187 69-241 (260)
486 COG4259 Uncharacterized protei 29.7 2E+02 0.0044 20.2 5.5 34 99-132 72-105 (121)
487 KOG2997 F-box protein FBX9 [Ge 29.7 77 0.0017 27.4 3.7 35 200-251 17-51 (366)
488 PRK15490 Vi polysaccharide bio 28.9 5.2E+02 0.011 24.7 12.8 76 155-243 23-98 (578)
489 PF03745 DUF309: Domain of unk 27.8 1.6E+02 0.0035 18.4 6.2 53 69-122 4-62 (62)
490 PF14929 TAF1_subA: TAF RNA Po 27.2 5.5E+02 0.012 24.4 11.4 115 69-187 347-468 (547)
491 PHA02537 M terminase endonucle 27.0 85 0.0018 25.8 3.5 23 111-133 190-212 (230)
492 KOG0128 RNA-binding protein SA 26.8 6.6E+02 0.014 25.2 17.8 160 82-249 96-261 (881)
493 smart00745 MIT Microtubule Int 26.1 1.9E+02 0.0041 18.7 7.6 15 198-212 4-18 (77)
494 cd02678 MIT_VPS4 MIT: domain c 25.0 2E+02 0.0043 18.6 7.4 17 231-247 18-34 (75)
495 TIGR00985 3a0801s04tom mitocho 24.2 3.2E+02 0.007 20.7 6.8 33 222-254 93-126 (148)
496 KOG2561 Adaptor protein NUB1, 24.0 3.4E+02 0.0073 24.9 6.6 95 65-168 164-295 (568)
497 PF14689 SPOB_a: Sensor_kinase 23.8 1.9E+02 0.0042 18.0 4.0 26 102-127 26-51 (62)
498 KOG1463 26S proteasome regulat 23.4 5.2E+02 0.011 22.9 20.1 193 103-312 132-358 (411)
499 PF14852 Fis1_TPR_N: Fis1 N-te 23.4 1.4E+02 0.003 16.2 3.7 32 135-171 4-35 (35)
500 PF12583 TPPII_N: Tripeptidyl 22.8 3.3E+02 0.0071 20.2 5.6 40 101-140 78-118 (139)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=3.7e-28 Score=211.49 Aligned_cols=203 Identities=19% Similarity=0.200 Sum_probs=125.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+-+|.++|.++...|+. ..||.+|.++++++|...++|++||.+|-..+.|+.|+.+|.+++.+.|.+ .++.++|.
T Consensus 216 ~fAiawsnLg~~f~~~Gei-~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 216 CFAIAWSNLGCVFNAQGEI-WLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred ceeeeehhcchHHhhcchH-HHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEE
Confidence 4455677777777777774 777777777777777777777777777777777777777777777777766 66666666
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+|...|+ .+-|+.+|++++++.|+.+.++.+||+++... |+..+|..+|.+++.++ |.+++
T Consensus 295 iYyeqG~--------ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~---------G~V~ea~~cYnkaL~l~--p~had 355 (966)
T KOG4626|consen 295 IYYEQGL--------LDLAIDTYKRALELQPNFPDAYNNLANALKDK---------GSVTEAVDCYNKALRLC--PNHAD 355 (966)
T ss_pred EEecccc--------HHHHHHHHHHHHhcCCCchHHHhHHHHHHHhc---------cchHHHHHHHHHHHHhC--CccHH
Confidence 6665553 55555555555555555555555555555555 55555555555555544 55555
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+.+|+|+++..+|.+++|...|.+++...|....+ .+++.++.+.|++++|+..|.+|+++.|.
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 55555555555555555555555555555555555 55555555555555555555555555443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=2.8e-27 Score=206.11 Aligned_cols=227 Identities=16% Similarity=0.151 Sum_probs=187.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
+..+-.++..+++... -.+....+|+++|.+|...+.| +.|+.+|.+++.+.|+.+.++-++|.+|+.+|+.+-|
T Consensus 231 ~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke~~~~-d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKEARIF-DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred cchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHHHhcc-hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHH
Confidence 3445555555555443 3456677888999999999998 8899999999999999888888899999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|++++++.|.. .++.++|.++..+| +..+|+.+|.+++.+.|+++++.++||++|... |
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G--------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~---------~ 368 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKG--------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ---------G 368 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhcc--------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---------c
Confidence 99999999998888 88888888888776 488888888888888888888888888888888 8
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
.+++|...|.+++... |..+.++.|+|.+|..+|++++|+.+|+.++++.|...++ .++|..+..+|+...|+..|.
T Consensus 369 ~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 369 KIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred cchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 8888888888888844 8888888888888888888888888888888888888887 888888888888888888888
Q ss_pred hhhhHHHHHhhcc
Q 020060 277 KTKRVASLASSLA 289 (331)
Q Consensus 277 ~a~~l~~~~~~~~ 289 (331)
+|..++|.+..-.
T Consensus 447 rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 447 RAIQINPTFAEAH 459 (966)
T ss_pred HHHhcCcHHHHHH
Confidence 8888777655544
No 3
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=3.1e-23 Score=182.71 Aligned_cols=219 Identities=21% Similarity=0.298 Sum_probs=175.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-------------------------
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------------------------- 94 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------------------------- 94 (331)
-...+|+.++.+++. .......++.++|..|+.+++| ++|..+|+.+-+.
T Consensus 333 y~~~~A~~~~~klp~----h~~nt~wvl~q~GrayFEl~~Y-~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPS----HHYNTGWVLSQLGRAYFELIEY-DQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHH----hcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHH
Confidence 445677777777554 3344557788888888888888 8888888765543
Q ss_pred ---------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 95 ---------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 95 ---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
+|+.|+.|..+|.||..+++++.|+++|++|++++|.. .++..+|.=+... ..++.|..+|+
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~--------ee~d~a~~~fr 479 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIAT--------EEFDKAMKSFR 479 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhh--------HHHHhHHHHHH
Confidence 45668888888888888888888888888888888877 6666666655543 45888888888
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 165 EAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 165 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
.|+..+|.+..+|+.+|.+|... ++++.|...|++|+..+ |.+......+|.++.++|+.++|+.+|++
T Consensus 480 ~Al~~~~rhYnAwYGlG~vy~Kq---------ek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 480 KALGVDPRHYNAWYGLGTVYLKQ---------EKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred hhhcCCchhhHHHHhhhhheecc---------chhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 88888888888888888888888 88888888888888866 88888888888888888888888888888
Q ss_pred HHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 245 SALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 245 al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
|+.++|.++.. ...+.++..++++.+|+..+++-+.+.
T Consensus 549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC
Confidence 88888888887 888888888888888887766655443
No 4
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.2e-23 Score=180.82 Aligned_cols=209 Identities=16% Similarity=0.163 Sum_probs=198.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..|..+|++|..++++ +.|+.+|++|+.++|.++.+|..+|.=+....+++.|..+|++|+.++|.+ .+|+.
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh-~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG 494 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDH-DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG 494 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHH-HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence 3457788999999999999996 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.+|.+.+ +++.|.-.|++|++++|.+......+|.++..+ |+.++|+..|++|+.++ |.
T Consensus 495 lG~vy~Kqe--------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~---------k~~d~AL~~~~~A~~ld--~k 555 (638)
T KOG1126|consen 495 LGTVYLKQE--------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQL---------KRKDKALQLYEKAIHLD--PK 555 (638)
T ss_pred hhhheeccc--------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHh---------hhhhHHHHHHHHHHhcC--CC
Confidence 999999886 599999999999999999999999999999999 99999999999999966 99
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
++-..+..|.+++.++++++|+..+++.-++-|+.... ..+|.++..+|+.+.|++.|.=|.++++.-..
T Consensus 556 n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 556 NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999999999999999999998 99999999999999999999988887765444
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2e-22 Score=189.51 Aligned_cols=203 Identities=15% Similarity=0.179 Sum_probs=158.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+..+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++ ..+..+|.
T Consensus 363 ~~~~~~~~la~~~~~~g~~-~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDP-DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 3445666667777777775 777777777777777777777777777777777777777777777777776 66667777
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++..+| ++++|+..+++++...|+++.++..+|.++... |++++|+..|++++... |.+..
T Consensus 442 ~~~~~g--------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~Al~l~--p~~~~ 502 (615)
T TIGR00990 442 TQYKEG--------SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ---------NKFDEAIEKFDTAIELE--KETKP 502 (615)
T ss_pred HHHHCC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcC--Ccccc
Confidence 777665 488888888888888888888888899988888 99999999999999854 65433
Q ss_pred H------HhhHHHHH-HHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 221 L------YFNCATVN-KYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 221 ~------~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
. +.+.+.++ ...|++++|..++++++.++|++... ..++.++..+|++++|++.|.++.++.+.
T Consensus 503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 2 23333334 44799999999999999999999887 99999999999999999999999887654
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=7.3e-22 Score=185.69 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=194.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+++|+..++....... ..+..+.++..+|.++...|++ ++|+..|++++.++|....+|..+|.++...|++++|+
T Consensus 308 ~~y~~A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~-~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKH-LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776553211 2356677899999999999997 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+|+++++.+|++ .+++.+|.++..+| ++++|+.+|+++++++|++..++..+|.++... |+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~---------g~ 448 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKG--------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKE---------GS 448 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHC---------CC
Confidence 9999999999998 89999999999887 599999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-------HHHH-HHHHHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-------EEVQ-MMVNLLDKIEN 270 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~l~-~~~~~l~~~~~ 270 (331)
+++|+..|+++++.. |.++.++..+|.++..+|++++|+..|++++.++|++... ...+ ..+...+++++
T Consensus 449 ~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 449 IASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999955 9999999999999999999999999999999999875332 1222 23334689999
Q ss_pred HHHhhhhhhhHHH
Q 020060 271 LLKGHAKTKRVAS 283 (331)
Q Consensus 271 a~~~~~~a~~l~~ 283 (331)
|...+.++..+.+
T Consensus 527 A~~~~~kAl~l~p 539 (615)
T TIGR00990 527 AENLCEKALIIDP 539 (615)
T ss_pred HHHHHHHHHhcCC
Confidence 9999888876643
No 7
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=4.9e-21 Score=162.18 Aligned_cols=187 Identities=17% Similarity=0.194 Sum_probs=166.2
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
...+|+.|...++ +++|+.+|++|++++|....+|..+|.=|..+++...|+..|++|++++|.+ .+|+.+|++|--+
T Consensus 333 CCiIaNYYSlr~e-HEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim 411 (559)
T KOG1155|consen 333 CCIIANYYSLRSE-HEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM 411 (559)
T ss_pred eeeehhHHHHHHh-HHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh
Confidence 3344666777777 4999999999999999999999999999999999999999999999999999 9999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
+ ...-|+-+|++|++.-|+++..|..||.||..+ ++.++|+.+|.+++..+ ..+..++..+
T Consensus 412 ~--------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl---------~~~~eAiKCykrai~~~--dte~~~l~~L 472 (559)
T KOG1155|consen 412 K--------MHFYALYYFQKALELKPNDSRLWVALGECYEKL---------NRLEEAIKCYKRAILLG--DTEGSALVRL 472 (559)
T ss_pred c--------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhcc--ccchHHHHHH
Confidence 6 488999999999999999999999999999999 99999999999999854 6677999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc-------CCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 226 ATVNKYLENYERALSGFEASALK-------DPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
|..|..+++..+|..+|++.++. +|....+ ..++.-+...+++++|..
T Consensus 473 akLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 99999999999999999999983 4444444 777777888888887764
No 8
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=1.1e-20 Score=177.67 Aligned_cols=209 Identities=12% Similarity=0.037 Sum_probs=139.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.++..+|.++...|++ ++|+..|++++.++|+++.++..+|.++...|++++|+..+++++...|++ ..+..++
T Consensus 108 ~~~~a~~~la~~l~~~g~~-~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~- 185 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQY-ATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL- 185 (656)
T ss_pred CChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-
Confidence 3344555555555555554 555555555555555555555555555555555555555555555555544 2221111
Q ss_pred HHHHhccCch---------------------------hHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 141 LERSMAQGSE---------------------------NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 141 ~~~~~g~~~~---------------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
.+...|+... ...+++++|+..++++++.+|+++.++..+|.++...
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~------ 259 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS------ 259 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------
Confidence 1111111000 0124577788888888888888888888888888887
Q ss_pred CChhhHHH----HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHH
Q 020060 194 WDHSKLLQ----SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 194 ~~~~~~~~----A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~ 268 (331)
|++++ |+..|++++... |+++.++.++|.++...|++++|+.++++++.++|++... ..++.++...|++
T Consensus 260 ---G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 260 ---GRSREAKLQAAEHWRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred ---CCchhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 88775 788888888854 8888888888888888888888888888888888888877 8888888888888
Q ss_pred HHHHHhhhhhhhHHH
Q 020060 269 ENLLKGHAKTKRVAS 283 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~ 283 (331)
++|+..+.++....+
T Consensus 335 ~eA~~~l~~al~~~P 349 (656)
T PRK15174 335 TAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHHHHHHHHhCc
Confidence 888887777765533
No 9
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.86 E-value=2.3e-19 Score=148.11 Aligned_cols=201 Identities=17% Similarity=0.143 Sum_probs=179.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+....+..++.+|..+...|++ ++|+..+++++..+|++..++..+|.++...|++++|+..++++++..|.+ ..+..
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 104 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDL-EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNN 104 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3445678899999999999998 999999999999999999999999999999999999999999999999988 88889
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLD--VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
+|.++...| ++++|+..+++++... +.....+..+|.++... |++++|...+.+++...
T Consensus 105 ~~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~-- 165 (234)
T TIGR02521 105 YGTFLCQQG--------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA---------GDFDKAEKYLTRALQID-- 165 (234)
T ss_pred HHHHHHHcc--------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--
Confidence 999999776 5999999999999854 45667889999999988 99999999999999955
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
|.++..+..+|.++...|++++|..++++++...|.+... ...+.+....|+..++........
T Consensus 166 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 166 PQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877766 777788888888888876555443
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=7.1e-20 Score=176.52 Aligned_cols=220 Identities=14% Similarity=0.053 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..++.+.. .++. ...++.+|.++...|++ ++|+.+|+++++.+|.....+..++......|++++|+
T Consensus 523 Gr~eeAi~~~rka~~----~~p~-~~a~~~la~all~~Gd~-~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 523 EDYATALAAWQKISL----HDMS-NEDLLAAANTAQAAGNG-AARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred CCHHHHHHHHHHHhc----cCCC-cHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHH
Confidence 446666777665543 1122 23467889999999997 99999999999999998888888887777889999999
Q ss_pred HHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 120 ~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
..|+++++++|+...+.++|.++..+| ++++|+..+++++.++|+++.++.++|.++... |++
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG--------~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~---------G~~ 659 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRH--------NVPAAVSDLRAALELEPNNSNYQAALGYALWDS---------GDI 659 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCH
Confidence 999999999997788899999999887 599999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
++|+..|+++++.. |+++.+++++|.++..+|++++|+.+|++++.++|++... ...+.+.....++..+.+.+.++
T Consensus 660 eeAi~~l~~AL~l~--P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 660 AQSREMLERAHKGL--PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999955 9999999999999999999999999999999999999887 89999999999999999888888
Q ss_pred hhHHHH
Q 020060 279 KRVASL 284 (331)
Q Consensus 279 ~~l~~~ 284 (331)
..+.+.
T Consensus 738 ~~~~~~ 743 (987)
T PRK09782 738 WTFSFD 743 (987)
T ss_pred hhcCcc
Confidence 776543
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1e-19 Score=155.21 Aligned_cols=211 Identities=16% Similarity=0.163 Sum_probs=175.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..+-..|+-++..|.| ++||.+|..||.+.|+.+..|.+++-||...|+|++-++...++++++|+. .++++.+.
T Consensus 113 k~A~~lK~~GN~~f~~kkY-~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 113 KYAAALKTKGNKFFRNKKY-DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRAS 191 (606)
T ss_pred HHHHHHHhhhhhhhhcccH-HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 4466788899999999999 999999999999999999999999999999999999999999999999999 88888877
Q ss_pred HHHHhccCchh---------------------------------------------------------------------
Q 020060 141 LERSMAQGSEN--------------------------------------------------------------------- 151 (331)
Q Consensus 141 ~~~~~g~~~~~--------------------------------------------------------------------- 151 (331)
++-.+|...+.
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~ 271 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDN 271 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccC
Confidence 77777654332
Q ss_pred --------------------------------------------------------------------------------
Q 020060 152 -------------------------------------------------------------------------------- 151 (331)
Q Consensus 152 -------------------------------------------------------------------------------- 151 (331)
T Consensus 272 ~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~ 351 (606)
T KOG0547|consen 272 KSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDA 351 (606)
T ss_pred CCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHH
Confidence
Q ss_pred --------------------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 152 --------------------QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 152 --------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+.++.++-...|.+|..++|+++.+|+..|.+++-+ +++++|+.-|++++.
T Consensus 352 ~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL---------~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 352 AIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLL---------QQYEEAIADFQKAIS 422 (606)
T ss_pred HHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHH---------HHHHHHHHHHHHHhh
Confidence 334456666777777778888888888888888877 888888888888888
Q ss_pred chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
++ |.+.-.+..++.+.+++++++++...|+.+.+..|+.+.. ...+.++...++++.|++.|.+|.+|.+.
T Consensus 423 L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 423 LD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred cC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 55 8888888888888888888888888888888888888777 77788888888888888888888887765
No 12
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.2e-19 Score=152.17 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=182.6
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
.|..+|..|....+- .+-...|.+|..++|+++++|+..|.+++-++++++|+.-|++++.++|++ -++..++.+.++
T Consensus 362 lyI~~a~~y~d~~~~-~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 362 LYIKRAAAYADENQS-EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHHhhhhcc-HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH
Confidence 477889999999995 999999999999999999999999999999999999999999999999999 888899999887
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC------C
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS------N 218 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~ 218 (331)
.+ ++.+++..|+++.+..|+.++++...|.++... ++|++|++.|.+++.+. |. +
T Consensus 441 ~~--------k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDq---------qqFd~A~k~YD~ai~LE--~~~~~~~v~ 501 (606)
T KOG0547|consen 441 QH--------KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQ---------QQFDKAVKQYDKAIELE--PREHLIIVN 501 (606)
T ss_pred HH--------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhH---------HhHHHHHHHHHHHHhhc--ccccccccc
Confidence 75 699999999999999999999999999999976 99999999999999965 77 5
Q ss_pred hhHHhhHHHHH-HHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHh
Q 020060 219 PDLYFNCATVN-KYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 219 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~ 286 (331)
+..+.+.|.+. ...+++.+|+..+++|+++||....+ ..++.+..+.|++++|++.|+++..+.....
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~ 571 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTES 571 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHH
Confidence 65566655543 35699999999999999999999998 9999999999999999999999988765433
No 13
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-19 Score=157.18 Aligned_cols=205 Identities=20% Similarity=0.242 Sum_probs=186.4
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
|..+..|+..|..|...|++ .+|..+|.++..++|..+.+|...|..+...|..++|+.+|.+|-++.|.. .....+|
T Consensus 309 P~~a~sW~aVg~YYl~i~k~-seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKY-SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCCcchhhHHHHHHHhcCc-HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 46678899999999999998 999999999999999999999999999999999999999999999999988 6777788
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch--hcCC
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE--RMKS 217 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~ 217 (331)
.-+..++ +++-|.++|.+|+.+.|.+|-+...+|.+.+.. +.|.+|..+|+.++..- ..+.
T Consensus 388 mey~~t~--------n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~---------~~y~~A~~~f~~~l~~ik~~~~e 450 (611)
T KOG1173|consen 388 MEYMRTN--------NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTY---------EEYPEALKYFQKALEVIKSVLNE 450 (611)
T ss_pred HHHHHhc--------cHHHHHHHHHHHHhcCCCcchhhhhhhheeehH---------hhhHHHHHHHHHHHHHhhhcccc
Confidence 8888665 699999999999999999999999999999988 99999999999999411 0111
Q ss_pred C---hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 218 N---PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 218 ~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
. ...+.|+|.++.+++.+++|+.+|++++.+.|.+... ..+|.++..+|+++.|+..|.||+-+.+
T Consensus 451 ~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 451 KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 1 2338999999999999999999999999999999998 9999999999999999999999997755
No 14
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.85 E-value=9.1e-20 Score=155.67 Aligned_cols=215 Identities=16% Similarity=0.111 Sum_probs=155.6
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHH
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
+.++..+.++.......+...+..|+.+|.++...|++ ++|+..|+++++++|+++.+|..+|.++...|++++|+..|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~-~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR-ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34444444333222236677889999999999999997 99999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 123 NLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 123 ~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
+++++++|++ .++.++|.++...| ++++|+..++++++.+|+++.....+ .+.... +++++
T Consensus 122 ~~Al~l~P~~~~a~~~lg~~l~~~g--------~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~---------~~~~~ 183 (296)
T PRK11189 122 DSVLELDPTYNYAYLNRGIALYYGG--------RYELAQDDLLAFYQDDPNDPYRALWL-YLAESK---------LDPKQ 183 (296)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHcc---------CCHHH
Confidence 9999999999 89999999999886 59999999999999999987321111 112223 67888
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH-------hcCCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA-------LKDPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
|+..+.+++.. .++..|. .+.++..+|+..++ ..+..+. ++.|....+ ..+|.++..+|++++|+.
T Consensus 184 A~~~l~~~~~~----~~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 184 AKENLKQRYEK----LDKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHhh----CCccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888776642 1222222 34555555554333 1222222 334444445 677777777777777777
Q ss_pred hhhhhhhHH
Q 020060 274 GHAKTKRVA 282 (331)
Q Consensus 274 ~~~~a~~l~ 282 (331)
.|.+|..++
T Consensus 258 ~~~~Al~~~ 266 (296)
T PRK11189 258 LFKLALANN 266 (296)
T ss_pred HHHHHHHhC
Confidence 777776554
No 15
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=8e-20 Score=158.98 Aligned_cols=205 Identities=15% Similarity=0.119 Sum_probs=182.6
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
+..|..++..|+. .+|.-+|+.++..+|.++++|..||.++...++-..|+..++++++++|++ .++..||..|...|
T Consensus 289 f~eG~~lm~nG~L-~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 289 FKEGCNLMKNGDL-SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 4678999999995 999999999999999999999999999999999999999999999999999 89999999888766
Q ss_pred cCchh---------------------------------HHHHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHhhhhhc
Q 020060 147 QGSEN---------------------------------QAEIVEESIQHAKEAITLDV--KDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 147 ~~~~~---------------------------------~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~ 191 (331)
....+ ....+..-.+.|.++....| .+++++..||.+|...
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls---- 443 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS---- 443 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc----
Confidence 42211 12235556667777777777 6888999999999988
Q ss_pred CCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHH
Q 020060 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIEN 270 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~ 270 (331)
|+|++|+.+|+.|+... |.|...|+.||..+....+..+|+..|.+|+++.|..... .++|...+.+|.+.+
T Consensus 444 -----~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 444 -----GEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred -----hHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHH
Confidence 99999999999999965 9999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHhhhhhhhHHHH
Q 020060 271 LLKGHAKTKRVASL 284 (331)
Q Consensus 271 a~~~~~~a~~l~~~ 284 (331)
|++.+..|+.+++.
T Consensus 517 A~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 517 AVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999999988765
No 16
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=5.5e-19 Score=149.87 Aligned_cols=199 Identities=15% Similarity=0.166 Sum_probs=176.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH----------------------------------HHHHHHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA----------------------------------DAWLCLGSCI 109 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------------------~~~~~lg~~~ 109 (331)
..+-...|.+.....+| ++|+..|+...+.+|-.. +...-+|..|
T Consensus 262 ~~i~~~~A~~~y~~rDf-D~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYY 340 (559)
T KOG1155|consen 262 MYIKTQIAAASYNQRDF-DQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYY 340 (559)
T ss_pred HHHHHHHHHHHhhhhhH-HHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHH
Confidence 34455677888888897 999999999998888421 1223346677
Q ss_pred HHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
.-.++.++|+.+|+++++++|.. .+|..+|.-+..+. +...|+..|++|++++|.+-.+|+.||++|..+
T Consensus 341 Slr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim- 411 (559)
T KOG1155|consen 341 SLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIM- 411 (559)
T ss_pred HHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHh-
Confidence 78889999999999999999999 99999999999774 699999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
+-..=|+-+|++|+... |.|+..|..+|.||.++++.++|+++|.+++.....+..+ ..+|.++..+++
T Consensus 412 --------~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 412 --------KMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred --------cchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 89999999999999965 9999999999999999999999999999999999888888 999999999999
Q ss_pred HHHHHHhhhhhhhHH
Q 020060 268 IENLLKGHAKTKRVA 282 (331)
Q Consensus 268 ~~~a~~~~~~a~~l~ 282 (331)
..+|...|.+.....
T Consensus 482 ~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888755
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=4.3e-19 Score=164.33 Aligned_cols=205 Identities=13% Similarity=-0.002 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcc---------cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVV---------PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIW 110 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 110 (331)
..+++|+..+++... ..+..+..+..+|.++... +++ ++|+..++++++++|+++.++..+|.++.
T Consensus 275 ~~~~~A~~~~~~Al~----ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~-~~A~~~~~~Al~ldP~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCVN----MSPNSIAPYCALAECYLSMAQMGIFDKQNAM-IKAKEHAIKATELDHNNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHcCCcccchHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666666666554 2334455666667655432 345 78888888888888888888888888888
Q ss_pred HhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhh
Q 020060 111 KKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFF 189 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 189 (331)
..|++++|+.+|+++++++|++ .+++.+|.++...| ++++|+..++++++++|.++..+..++.++...
T Consensus 350 ~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G--------~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~-- 419 (553)
T PRK12370 350 IHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG--------QLEEALQTINECLKLDPTRAAAGITKLWITYYH-- 419 (553)
T ss_pred HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhc--
Confidence 8888888888888888888888 77888888888776 488888888888888888877766666666666
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
|++++|+..+++++... .|+++..+.++|.++..+|++++|...+.+.....|..... ..++..+...|+
T Consensus 420 -------g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 420 -------TGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred -------cCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 78888888888887631 36777788888888888888888888888877777776665 666666666664
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=3.1e-19 Score=167.92 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=144.6
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHH----HHHHHHHHHhcCCCCCchhH
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVE----ESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~----~A~~~~~~al~~~p~~~~~~ 177 (331)
..++.++...|++++|+..|+++++..|++ .++..+|.++...|. ++ +|+..++++++.+|+++.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~--------~~eA~~~A~~~~~~Al~l~P~~~~a~ 287 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR--------SREAKLQAAEHWRHALQFNSDNVRIV 287 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--------chhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 334667777888888888888888888887 778889999988874 55 48999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E 256 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 256 (331)
..+|.++... |++++|+..+++++... |+++.++.++|.++...|++++|+..|++++..+|++... .
T Consensus 288 ~~lg~~l~~~---------g~~~eA~~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 288 TLYADALIRT---------GQNEKAIPLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred HHHHHHHHHC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 9999999999 99999999999999955 9999999999999999999999999999999999998766 6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 257 EVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++.++...|++++|++.|.++.+..+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 6788999999999999999998877554
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=5.7e-19 Score=163.53 Aligned_cols=197 Identities=16% Similarity=0.102 Sum_probs=172.5
Q ss_pred hHHHHHhhhhhhc---ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---------CChhHHHHHHHHHHhcCCC
Q 020060 64 ATYEYLKGKILDV---VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK---------GDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 64 ~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~ 131 (331)
+..++..|..... .+++ ++|+.+|+++++++|+++.+|..+|.+|... +++++|+..++++++++|+
T Consensus 258 a~~~~lrg~~~~~~~~~~~~-~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSL-QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHhHHHHHccCHHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 3446667764433 3454 7999999999999999999999999988744 3489999999999999999
Q ss_pred h-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 132 K-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 132 ~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+ .++..+|.++...| ++++|+..++++++++|+++.+++.+|.++... |++++|+..+++++
T Consensus 337 ~~~a~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~---------G~~~eAi~~~~~Al 399 (553)
T PRK12370 337 NPQALGLLGLINTIHS--------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMA---------GQLEEALQTINECL 399 (553)
T ss_pred CHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHH
Confidence 9 88999999999776 599999999999999999999999999999999 99999999999999
Q ss_pred hchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC-CCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 211 KDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD-PSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+.+ |.++..++.++.+++..|++++|+..+++++... |+++.. ..++.++..+|++++|...+.+...
T Consensus 400 ~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 400 KLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred hcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 966 9998887778888888999999999999999875 777776 8899999999999999988766543
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=1.7e-18 Score=134.76 Aligned_cols=196 Identities=18% Similarity=0.136 Sum_probs=174.5
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+....+.+...+|.-|+..|++ ..|..-++++++.+|+...+|..+|.+|...|+.+.|-+.|++++.++|++ +++.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~-~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDY-AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhh
Confidence 4456778888999999999997 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITL--DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
.|..++..| ++++|...|++|+.. .+..+.+|-++|.|.+.. |+++.|.++|++++..+
T Consensus 109 YG~FLC~qg--------~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~---------gq~~~A~~~l~raL~~d-- 169 (250)
T COG3063 109 YGAFLCAQG--------RPEEAMQQFERALADPAYGEPSDTLENLGLCALKA---------GQFDQAEEYLKRALELD-- 169 (250)
T ss_pred hhHHHHhCC--------ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhc---------CCchhHHHHHHHHHHhC--
Confidence 999999887 599999999999973 456678999999999999 99999999999999965
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHh
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQ-MMVNLLDKIENLLKG 274 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~-~~~~~l~~~~~a~~~ 274 (331)
|+++.....++..++..|+|..|..++++.....+-......++ ++-..+|+...+.+.
T Consensus 170 p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 170 PQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999999999999988877544444444 566667776666544
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=9.4e-19 Score=156.23 Aligned_cols=226 Identities=13% Similarity=0.065 Sum_probs=189.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+++|+..++.+.......+......+..+|.++...|++ ++|+..|.++++..|....++..++.++...|++++|+
T Consensus 83 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (389)
T PRK11788 83 GEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL-DRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAI 161 (389)
T ss_pred CcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHH
Confidence 45566666666554321112223446788899999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 120 NCFNLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 120 ~~~~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
..+.++++..|.+ ..+..+|.++...| ++++|+.+++++++.+|++..++..+|.++...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------ 227 (389)
T PRK11788 162 DVAERLEKLGGDSLRVEIAHFYCELAQQALARG--------DLDAARALLKKALAADPQCVRASILLGDLALAQ------ 227 (389)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC------
Confidence 9999999888764 24456777777665 599999999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
|++++|+..+++++... |.+ ..++..++.++...|++++|...+++++...|+......++.++...|++++|.
T Consensus 228 ---g~~~~A~~~~~~~~~~~--p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 228 ---GDYAAAIEALERVEEQD--PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred ---CCHHHHHHHHHHHHHHC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHH
Confidence 99999999999999743 655 466889999999999999999999999999998755588999999999999999
Q ss_pred HhhhhhhhHHHHH
Q 020060 273 KGHAKTKRVASLA 285 (331)
Q Consensus 273 ~~~~~a~~l~~~~ 285 (331)
..+.++.+..|..
T Consensus 303 ~~l~~~l~~~P~~ 315 (389)
T PRK11788 303 ALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHhCcCH
Confidence 9999888775543
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=1.6e-18 Score=167.20 Aligned_cols=197 Identities=11% Similarity=0.007 Sum_probs=161.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
...+|.++...|++ ++|+.+|++++...|.. ..+..+|.++...|++++|+.+|+++++..|.. .....++......
T Consensus 512 ~L~lA~al~~~Gr~-eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDY-ATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 44455555666775 77777777766554443 345666777777777777777777777777666 4444444444444
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
| ++++|+..++++++.+|+ +.++.++|.++... |++++|+..|++++... |+++.++.++
T Consensus 590 G--------r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l---------G~~deA~~~l~~AL~l~--Pd~~~a~~nL 649 (987)
T PRK09782 590 G--------QPELALNDLTRSLNIAPS-ANAYVARATIYRQR---------HNVPAAVSDLRAALELE--PNNSNYQAAL 649 (987)
T ss_pred C--------CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 4 699999999999999996 89999999999999 99999999999999965 9999999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
|.++...|++++|+..|+++++.+|+++.. .+++.++..+|++++|+..+.++..+.+..
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999998 999999999999999999999999877643
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=1.7e-18 Score=170.09 Aligned_cols=218 Identities=17% Similarity=0.139 Sum_probs=132.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
++.++|+..+..... ..+.....+..++.++...|++ ++|+..++......|..+..+..+|.++...|++++|+
T Consensus 649 ~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 649 KNYAKAITSLKRALE----LKPDNTEAQIGLAQLLLAAKRT-ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHH
Confidence 445555555554432 2223344555666666666665 66666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 120 ~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
..|++++...|++..+..++.++...| ++++|+..++++++..|+++.+++.+|.++... |++
T Consensus 724 ~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---------g~~ 786 (899)
T TIGR02917 724 QAYRKALKRAPSSQNAIKLHRALLASG--------NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQ---------KDY 786 (899)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------cCH
Confidence 666666666666555555666666554 366666666666666666666666666666655 666
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
++|+..|+++++.. |.++.++.++|.++...|+ .+|+.++++++...|+++.. ..++.++...|++++|++.+.++
T Consensus 787 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666533 6666666666666666666 55666666666666666555 55666666666666666666666
Q ss_pred hhHH
Q 020060 279 KRVA 282 (331)
Q Consensus 279 ~~l~ 282 (331)
.++.
T Consensus 864 ~~~~ 867 (899)
T TIGR02917 864 VNIA 867 (899)
T ss_pred HhhC
Confidence 5543
No 24
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=2.5e-18 Score=168.82 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=158.2
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..+..+|.++...|++ ++|+.+|.++++.+|++..++..+|.++...|++++|+..|++++...|.+ .++..++.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDL-AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCcHHHHHHHHHHHhCCCH-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4466788899999999997 999999999999999999999999999999999999999999999999888 77888888
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++++|+..+.+++..+|.+...+..++.++... |++++|+..+++++... |.++.
T Consensus 542 ~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~ 602 (899)
T TIGR02917 542 LYLRTG--------NEEEAVAWLEKAAELNPQEIEPALALAQYYLGK---------GQLKKALAILNEAADAA--PDSPE 602 (899)
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCccchhHHHHHHHHHHHC---------CCHHHHHHHHHHHHHcC--CCCHH
Confidence 888766 477777777777777777777777777777766 77777777777777633 77777
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.|..+|.++...|++++|+..|++++..+|++... ..++.++...|++++|+..+.++..+
T Consensus 603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777776666 67777777777777777766666544
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=3.7e-18 Score=170.72 Aligned_cols=195 Identities=16% Similarity=0.098 Sum_probs=171.4
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H--HH----------
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K--IL---------- 135 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~---------- 135 (331)
.+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++.+|++ . .|
T Consensus 274 ~~G~~~~~~g~~-~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 274 AQGLAAVDSGQG-GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 568889999998 999999999999999999999999999999999999999999999999976 2 11
Q ss_pred --hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 136 --CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 136 --~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
...|.++...| ++++|+..|+++++.+|+++.++..+|.++... |++++|+..|+++++..
T Consensus 353 ~~~~~g~~~~~~g--------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~---------g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 353 LLIQQGDAALKAN--------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMAR---------KDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHhC
Confidence 23455666555 599999999999999999999999999999998 99999999999999955
Q ss_pred hcCCChhHHhhHHH------------------------------------------HHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 214 RMKSNPDLYFNCAT------------------------------------------VNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 214 ~~~~~~~~~~~la~------------------------------------------~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|.+..++..++. ++...|++++|+..|+++++++|+
T Consensus 416 --p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~ 493 (1157)
T PRK11447 416 --PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG 493 (1157)
T ss_pred --CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 888776655444 445679999999999999999999
Q ss_pred CcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 252 LNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 252 ~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++.. ..++.++...|++++|+..+.++.++.+
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9988 9999999999999999999888876543
No 26
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=4e-18 Score=132.71 Aligned_cols=160 Identities=15% Similarity=0.133 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
..+...||.-|+..|++..|...++++++.+|++ .+|..++.+|..+|+ .+.|-+.|++|+.++|++++++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~p~~GdVL 106 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcCCCccchh
Confidence 4678899999999999999999999999999999 999999999999984 9999999999999999999999
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E 256 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~ 256 (331)
++.|..+-.. |++++|...|++++....-+..+..+-|+|.|..++|+++.|..+|++++..+|+++.. .
T Consensus 107 NNYG~FLC~q---------g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l 177 (250)
T COG3063 107 NNYGAFLCAQ---------GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALL 177 (250)
T ss_pred hhhhHHHHhC---------CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHH
Confidence 9999999988 99999999999999865556677889999999999999999999999999999999998 9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020060 257 EVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~ 275 (331)
.++..+...|++..|...+
T Consensus 178 ~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 178 ELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHHhcccchHHHHHH
Confidence 9999999999998887443
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=5.9e-18 Score=151.11 Aligned_cols=219 Identities=15% Similarity=0.063 Sum_probs=184.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCCh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDL 115 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 115 (331)
+.+++|+..+.+... ..+....+++.+|.++...|++ ++|+..+++++...+.. ..++..+|.+|...|++
T Consensus 49 ~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 49 EQPDKAIDLFIEMLK----VDPETVELHLALGNLFRRRGEV-DRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred CChHHHHHHHHHHHh----cCcccHHHHHHHHHHHHHcCcH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 444556666666554 2234567889999999999998 99999999998864332 35789999999999999
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch-----hHHHHHHHHHhhhh
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-----SWYNLGNACLTSFF 189 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~ 189 (331)
++|+.+|.++++..|.+ .++..++.++...| ++++|+..++++++..|.+.. .+..+|.++...
T Consensus 124 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-- 193 (389)
T PRK11788 124 DRAEELFLQLVDEGDFAEGALQQLLEIYQQEK--------DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR-- 193 (389)
T ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC--
Confidence 99999999999988877 78888999998775 699999999999998876543 456788888888
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-H-HHHHHHHHHHHH
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA-T-EEVQMMVNLLDK 267 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~l~~~~~~l~~ 267 (331)
|++++|+..|+++++.. |.+..+++.+|.++...|++++|+.+|++++..+|.+.. . ..++.++...|+
T Consensus 194 -------~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 194 -------GDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred -------CCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999854 889999999999999999999999999999999988644 3 778889999999
Q ss_pred HHHHHHhhhhhhhHH
Q 020060 268 IENLLKGHAKTKRVA 282 (331)
Q Consensus 268 ~~~a~~~~~~a~~l~ 282 (331)
+++|+..+.++.++.
T Consensus 265 ~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 265 EAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999998888776653
No 28
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.80 E-value=3.3e-18 Score=171.06 Aligned_cols=224 Identities=13% Similarity=0.053 Sum_probs=185.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH--------------HHHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD--------------AWLCL 105 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~l 105 (331)
.++++|+..+..... ..+....+++.+|.++...|++ ++|+.+|+++++.+|++.. ....+
T Consensus 283 g~~~~A~~~l~~aL~----~~P~~~~a~~~Lg~~~~~~g~~-~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 283 GQGGKAIPELQQAVR----ANPKDSEALGALGQAYSQQGDR-ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 445667777766553 2345578899999999999998 9999999999999997642 12355
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
|.++...|++++|+.+|+++++.+|++ .++..+|.++...| ++++|+..|+++++.+|.+..++..++.++
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g--------~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK--------DYAAAERYYQQALRMDPGNTNAVRGLANLY 429 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888999999999999999999999998 88899999999887 599999999999999999998888777765
Q ss_pred Hhhh-------hh--------------------------cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 185 LTSF-------FV--------------------------TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 185 ~~~~-------~~--------------------------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
...- +. ......|++++|+..|+++++.. |+++.+++.+|.++..
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3100 00 00002389999999999999955 9999999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
.|++++|...|++++..+|+++.. ..++..+...++.++|+..+.+.
T Consensus 508 ~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l 555 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTL 555 (1157)
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 999999999999999999999887 77788888888888888766553
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.79 E-value=6e-19 Score=150.13 Aligned_cols=218 Identities=16% Similarity=0.186 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCCCCCCCC-cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-------------------
Q 020060 40 NESDLALRLLGSVPPEQRKS-PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------------------- 99 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------------------- 99 (331)
++.++|+++|...... . ++....+|..+|.+....+++ +.|+..|++++..++..+
T Consensus 22 ~~~~~Al~~L~~~~~~---~~~~~~~~~~~~~a~La~~~~~~-~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~ 97 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQK---IAPPDDPEYWRLLADLAWSLGDY-DEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccc---ccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 4445566666332211 2 344455666666666666665 666666666665554433
Q ss_pred -------------HHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHH
Q 020060 100 -------------DAWLCLGSCIWKKGDLPAAKNCFNLALSKG--PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHA 163 (331)
Q Consensus 100 -------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~ 163 (331)
..+.....++...++++++...+.++.... +.+ ..|..+|.++...| +.++|+.++
T Consensus 98 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G--------~~~~A~~~~ 169 (280)
T PF13429_consen 98 KLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG--------DPDKALRDY 169 (280)
T ss_dssp --------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC--------HHHHHHHHH
T ss_pred cccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 334445555666677777777777655433 233 56677788887776 588999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 164 KEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 164 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
+++++.+|+++.++..++.++... |+++++...+....+.. |.++..+..+|.++..+|++++|+.+|+
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~---------~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDM---------GDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTT---------CHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC---------CChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccc
Confidence 999999999999888888888877 88888888888777743 8888888899999999999999999999
Q ss_pred HHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 244 ASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 244 ~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+++..+|+++.. ..++.++...|+.++|...+.++.+
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccc
Confidence 999999998887 8999999999999999887777654
No 30
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.78 E-value=1.8e-17 Score=151.99 Aligned_cols=222 Identities=17% Similarity=0.172 Sum_probs=190.0
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChhHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
++.|...+..+.. ..+..+..++..|.+.+..++| ..|+.+|++++.++|.. ++....+|.|++.+|+.+.|+.
T Consensus 146 ~~~A~a~F~~Vl~----~sp~Nil~LlGkA~i~ynkkdY-~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLK----QSPDNILALLGKARIAYNKKDY-RGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHh----hCCcchHHHHHHHHHHhccccH-HHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHH
Confidence 4555555555443 3456677788888999999999 99999999999999975 6788999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.|.++++++|++ .++..||.+..... ....+..++..+.++...+|.+|.+...|+.-++.. |+|
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~-----d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK---------~dy 286 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFN-----DSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK---------KDY 286 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc---------ccH
Confidence 999999999988 88888998877654 335699999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHHhch-hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhh
Q 020060 200 LQSLKAYQNAEKDE-RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 200 ~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
..++.....++... ..+.-.+.+|.+|.+|+.+|+|++|..+|.++++.+|++.. + .++|.++...|.++.+...|.
T Consensus 287 ~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fE 366 (1018)
T KOG2002|consen 287 ERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFE 366 (1018)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHH
Confidence 99999999999732 11233456999999999999999999999999999999844 5 999999999999999998888
Q ss_pred hhhhHH
Q 020060 277 KTKRVA 282 (331)
Q Consensus 277 ~a~~l~ 282 (331)
+..+..
T Consensus 367 kv~k~~ 372 (1018)
T KOG2002|consen 367 KVLKQL 372 (1018)
T ss_pred HHHHhC
Confidence 776543
No 31
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=8.4e-18 Score=146.52 Aligned_cols=187 Identities=14% Similarity=0.151 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
.+.+|.-.++.... ..|..+.+|..+|.+....++ ...||..++++++++|++.+++..||.+|...|.-.+|+.
T Consensus 300 ~L~~A~LafEAAVk----qdP~haeAW~~LG~~qaENE~-E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 300 DLSEAALAFEAAVK----QDPQHAEAWQKLGITQAENEN-EQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred CchHHHHHHHHHHh----hChHHHHHHHHhhhHhhhccc-hHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 34555555554443 557889999999999999999 4999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh--------------------------------------------HHHhhHHHHHHHhccCchhHHHHH
Q 020060 121 CFNLALSKGPNK--------------------------------------------KILCQLSMLERSMAQGSENQAEIV 156 (331)
Q Consensus 121 ~~~~al~~~~~~--------------------------------------------~~~~~l~~~~~~~g~~~~~~~~~~ 156 (331)
++.+.+...|.. ++...||.+|.-. +.|
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls--------~ef 446 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS--------GEF 446 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc--------hHH
Confidence 999997665432 1333444444433 579
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 157 EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
++|+.+|+.|+...|++...|+.||-++... .+.++|+..|++|+++. |....+++|+|.++..+|.|.
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~---------~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANG---------NRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCC---------cccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHH
Confidence 9999999999999999999999999999877 89999999999999966 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 020060 237 RALSGFEASALKDPS 251 (331)
Q Consensus 237 ~A~~~~~~al~~~~~ 251 (331)
+|.++|-.|+.+.+.
T Consensus 516 EA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999998776
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=7.4e-17 Score=133.04 Aligned_cols=186 Identities=13% Similarity=0.114 Sum_probs=160.5
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
++++|+..+..... ..+.....+..+|.++...|++ ++|+..+++++...|.+..++..+|.++...|++++|+.
T Consensus 46 ~~~~A~~~~~~~l~----~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 46 DLEVAKENLDKALE----HDPDDYLAYLALALYYQQLGEL-EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred CHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 34455555544332 2234567888999999999997 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC--Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 121 CFNLALSKGP--NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 121 ~~~~al~~~~--~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
.|++++...+ .. ..+..+|.++...| ++++|...+.+++..+|.++..+..+|.++... |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~ 183 (234)
T TIGR02521 121 QFEQAIEDPLYPQPARSLENAGLCALKAG--------DFDKAEKYLTRALQIDPQRPESLLELAELYYLR---------G 183 (234)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc---------C
Confidence 9999998643 23 67888999999886 599999999999999999999999999999998 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
++++|+..+++++.. .|.++..+..++.++...|+.++|..+.+......|
T Consensus 184 ~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999999985 388888899999999999999999999888776654
No 33
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.4e-17 Score=135.70 Aligned_cols=202 Identities=13% Similarity=0.116 Sum_probs=160.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...+..++++|....+. ..|+..|.+.++..|.+...+...+.+|..++++++|+++|+.+++..|.+ ++.-.+|.-|
T Consensus 256 ~dTfllLskvY~ridQP-~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~y 334 (478)
T KOG1129|consen 256 PDTFLLLSKVYQRIDQP-ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGY 334 (478)
T ss_pred hhHHHHHHHHHHHhccH-HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecc
Confidence 44566667777777774 777777777777777777777777777777777777777777777777777 6666666666
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDL 221 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~ 221 (331)
+.-+ +.+-|+.+|++.++..-.+++.+.++|.|++.. ++++-++.+|++++.....|+ -.++
T Consensus 335 fY~~--------~PE~AlryYRRiLqmG~~speLf~NigLCC~ya---------qQ~D~~L~sf~RAlstat~~~~aaDv 397 (478)
T KOG1129|consen 335 FYDN--------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYA---------QQIDLVLPSFQRALSTATQPGQAADV 397 (478)
T ss_pred ccCC--------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh---------cchhhhHHHHHHHHhhccCcchhhhh
Confidence 5443 477888888888888888889999999999988 999999999999998543233 4578
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|+|+|.+....||+..|..+|+-++..+|++..+ .+++.+-.+.|++..|...+..|..+.|
T Consensus 398 WYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 398 WYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred hhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999999998 9999999999999988877776664433
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.75 E-value=2.7e-16 Score=130.41 Aligned_cols=182 Identities=12% Similarity=0.056 Sum_probs=142.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA---DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
..+..+..++.+|..+...|+| ++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDY-TEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 3456788899999999999998 999999999999999875 688999999999999999999999999999987
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhhhcCCC
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFFVTGSW 194 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~ 194 (331)
.+++.+|.++...........+++++|+..+++++..+|++...+ ..+|.++...
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~------- 179 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKR------- 179 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------
Confidence 368889999886521111123569999999999999999987554 2445556655
Q ss_pred ChhhHHHHHHHHHHHHhch-hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 195 DHSKLLQSLKAYQNAEKDE-RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
|++.+|+..|++++... ..|..+.+++.+|.++..+|++++|..+++......|
T Consensus 180 --g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 180 --GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred --CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 77788888888777632 0123346777888888888888888777776655554
No 35
>PLN02789 farnesyltranstransferase
Probab=99.75 E-value=2.9e-16 Score=134.01 Aligned_cols=200 Identities=12% Similarity=0.105 Sum_probs=164.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
....++-.+-.++...+.+ ++|+..+.+++.++|++..+|..+|.++...| ++++++.++.++++.+|++ .+|...+
T Consensus 35 ~~~~a~~~~ra~l~~~e~s-erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~ 113 (320)
T PLN02789 35 EFREAMDYFRAVYASDERS-PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHH
Confidence 3344444444456677786 99999999999999999999999999999998 6899999999999999999 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.++..+|. ..+++++.++.++++.+|++..+|...+.++... |++++++.++.++|+.+ |.+.
T Consensus 114 ~~l~~l~~------~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l---------~~~~eeL~~~~~~I~~d--~~N~ 176 (320)
T PLN02789 114 WLAEKLGP------DAANKELEFTRKILSLDAKNYHAWSHRQWVLRTL---------GGWEDELEYCHQLLEED--VRNN 176 (320)
T ss_pred HHHHHcCc------hhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHC--CCch
Confidence 98887763 1246789999999999999999999999999988 99999999999999955 9999
Q ss_pred hHHhhHHHHHHHh---hcH----HHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhh
Q 020060 220 DLYFNCATVNKYL---ENY----ERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTK 279 (331)
Q Consensus 220 ~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~ 279 (331)
.+|+.++.+...+ |.+ ++++.+..+++.++|++..+ ..++.++.. +++..++++.+.++.
T Consensus 177 sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~ 248 (320)
T PLN02789 177 SAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL 248 (320)
T ss_pred hHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence 9999999998776 333 57888899999999999988 777777765 344455555554443
No 36
>PLN02789 farnesyltranstransferase
Probab=99.74 E-value=1.2e-15 Score=130.30 Aligned_cols=205 Identities=15% Similarity=0.050 Sum_probs=170.5
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh--hHHH
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDL--PAAK 119 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~ 119 (331)
+.|+.....+.. ..+....+|..+|.++..+| ++ ++++..+.+++..+|++..+|..++.++...|+. ++++
T Consensus 54 erAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~~l-~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el 128 (320)
T PLN02789 54 PRALDLTADVIR----LNPGNYTVWHFRRLCLEALDADL-EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL 128 (320)
T ss_pred HHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcchhH-HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence 345555444432 33466778999999999998 55 9999999999999999999999999999998874 7889
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.++.++++.+|++ .+|...+.++..+| +++++++++.++++.+|.+..+|+.++.++..+....+ ....
T Consensus 129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~--------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~--~~~~ 198 (320)
T PLN02789 129 EFTRKILSLDAKNYHAWSHRQWVLRTLG--------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGG--LEAM 198 (320)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccc--cccc
Confidence 9999999999999 99999999999886 59999999999999999999999999998765410000 0012
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
.++++.+..++|..+ |+|..+|..++.++.. +++..+|...+.+++...|.+..+ ..++.++..
T Consensus 199 ~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 357888999999965 9999999999999988 456778999999999999998887 888888765
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.73 E-value=3.7e-16 Score=133.50 Aligned_cols=185 Identities=15% Similarity=0.115 Sum_probs=135.5
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
.+.|+..+..... ..+..+.+|+.+|.++...|++ ++|+..|+++++++|++..++.++|.++...|++++|+..
T Consensus 80 ~~~A~~~~~~Al~----l~P~~~~a~~~lg~~~~~~g~~-~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~ 154 (296)
T PRK11189 80 RALARNDFSQALA----LRPDMADAYNYLGIYLTQAGNF-DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD 154 (296)
T ss_pred HHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444444332 2345678999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 122 FNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 122 ~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
|+++++.+|++........+.... +++++|+..+.+++...+.. .|. .+.++... |++..
T Consensus 155 ~~~al~~~P~~~~~~~~~~l~~~~--------~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~l---------g~~~~ 214 (296)
T PRK11189 155 LLAFYQDDPNDPYRALWLYLAESK--------LDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYL---------GKISE 214 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHcc--------CCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHc---------cCCCH
Confidence 999999999884211111112222 35899999998876543322 232 34444444 44432
Q ss_pred --HHHHHHH----HHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 202 --SLKAYQN----AEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 202 --A~~~~~~----al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
++..+.+ .++. .|..+++|+++|.++..+|++++|+.+|++++..+|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~l--~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 215 ETLMERLKAGATDNTEL--AERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred HHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 3333332 2232 367778999999999999999999999999999997543
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.72 E-value=3.9e-16 Score=118.52 Aligned_cols=126 Identities=17% Similarity=0.159 Sum_probs=89.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHH
Q 020060 85 EDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHA 163 (331)
Q Consensus 85 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~ 163 (331)
..+|+++++++|+. +..+|.++...|++++|+.+|++++.++|.+ .++..+|.++..+| ++++|+..|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHHHHH
Confidence 45677777777764 4556777777777777777777777777776 67777777777654 477777777
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh
Q 020060 164 KEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL 232 (331)
Q Consensus 164 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 232 (331)
++++.++|+++.+++++|.++... |++++|+..|+++++.. |+++..+.++|.+....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~---------g~~~eAi~~~~~Al~~~--p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMM---------GEPGLAREAFQTAIKMS--YADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHH
Confidence 777777777777777777777776 77777777777777744 77777777766665543
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.71 E-value=7.8e-16 Score=116.85 Aligned_cols=129 Identities=11% Similarity=0.059 Sum_probs=117.6
Q ss_pred HHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 118 AKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 118 A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
-...|+++++++|++ +..+|.++...| ++++|+.+|++++..+|.++.+|..+|.++... |
T Consensus 12 ~~~~~~~al~~~p~~--~~~~g~~~~~~g--------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~---------g 72 (144)
T PRK15359 12 PEDILKQLLSVDPET--VYASGYASWQEG--------DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML---------K 72 (144)
T ss_pred HHHHHHHHHHcCHHH--HHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH---------h
Confidence 356899999999986 557899998776 599999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
++++|+..|++++..+ |.++.+++++|.++..+|++++|+..|++++.+.|+++.. ..++.+...++.
T Consensus 73 ~~~~A~~~y~~Al~l~--p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~ 141 (144)
T PRK15359 73 EYTTAINFYGHALMLD--ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT 141 (144)
T ss_pred hHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 9999999999999966 9999999999999999999999999999999999999987 777777766543
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-15 Score=132.15 Aligned_cols=223 Identities=17% Similarity=0.113 Sum_probs=189.0
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
++.+.+++.+.+... +|....-+-..+| ++...|+. .+-...-.+.++..|..+-.|+..|..|...|++++|.+
T Consensus 259 ~f~~c~kit~~lle~---dpfh~~~~~~~ia-~l~el~~~-n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 259 RFKECLKITEELLEK---DPFHLPCLPLHIA-CLYELGKS-NKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred hHHHHHHHhHHHHhh---CCCCcchHHHHHH-HHHHhccc-chHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 344555555554432 4444444555667 67777775 666677777888999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
+|.++..++|.. .+|...|..+...| ..++|+.+|..|-++.|..-.....+|.-|..+ +++
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~--------EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t---------~n~ 396 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEG--------EHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRT---------NNL 396 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcc--------hHHHHHHHHHHHHHhccCCcchHHHHHHHHHHh---------ccH
Confidence 999999999999 99999999998776 599999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC----CC---CcHH-HHHHHHHHHHHHHHHH
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD----PS---LNAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~---~~~~-~~l~~~~~~l~~~~~a 271 (331)
+-|...|.+|+... |.+|-++..+|.+.+..+.|.+|..+|+.++..- +. +... .++|.++.+++++.+|
T Consensus 397 kLAe~Ff~~A~ai~--P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA--PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHhcC--CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 99999999999966 9999999999999999999999999999999432 22 3334 9999999999999999
Q ss_pred HHhhhhhhhHHHHHhh
Q 020060 272 LKGHAKTKRVASLASS 287 (331)
Q Consensus 272 ~~~~~~a~~l~~~~~~ 287 (331)
+..+++++.+.+...+
T Consensus 475 I~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDAS 490 (611)
T ss_pred HHHHHHHHHcCCCchh
Confidence 9999999987665433
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=3e-16 Score=133.55 Aligned_cols=184 Identities=21% Similarity=0.215 Sum_probs=118.5
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHhCChhH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN--PSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
+..++|+.++...-. .......+.....++...+++ +++...+.++.... +.++..|..+|.++...|++++
T Consensus 91 ~~~~~A~~~~~~~~~-----~~~~~~~l~~~l~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 91 GDPEEALKLAEKAYE-----RDGDPRYLLSALQLYYRLGDY-DEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp --------------------------------H-HHHTT-H-HHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred ccccccccccccccc-----cccccchhhHHHHHHHHHhHH-HHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 444555555544332 112345556667778888997 99999999977655 6788999999999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|+.+|+++++.+|++ .++..++.++...| +++++...+....+..|+++..|..+|.++..+
T Consensus 165 A~~~~~~al~~~P~~~~~~~~l~~~li~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l--------- 227 (280)
T PF13429_consen 165 ALRDYRKALELDPDDPDARNALAWLLIDMG--------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQL--------- 227 (280)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH---------
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc---------
Confidence 999999999999998 78888999988776 588888888888877799999999999999999
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
|++++|+.+|+++++.. |+|+..+..+|.++...|++++|..++++++..
T Consensus 228 g~~~~Al~~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 99999999999999955 999999999999999999999999999998763
No 42
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=3e-15 Score=136.70 Aligned_cols=215 Identities=18% Similarity=0.245 Sum_probs=169.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|..++.++.. ..+.....|+.+|.+|...|+. .++...+..|-.++|.+.+.|..++....++|++.+|.
T Consensus 153 g~~eeA~~i~~EvIk----qdp~~~~ay~tL~~IyEqrGd~-eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIK----QDPRNPIAYYTLGEIYEQRGDI-EKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred CCHHHHHHHHHHHHH----hCccchhhHHHHHHHHHHcccH-HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 555666777666654 3456677899999999999995 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--------------------------
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-------------------------- 172 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------------------------- 172 (331)
-||.+|++.+|.+ ...+..+.++.++|+. ..|+..|.++++..|.
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~--------~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDL--------KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChH--------HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999 7778888888877753 2222222222222220
Q ss_pred --------------------------------------------------------------------------------
Q 020060 173 -------------------------------------------------------------------------------- 172 (331)
Q Consensus 173 -------------------------------------------------------------------------------- 172 (331)
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence
Q ss_pred ---------------------------------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 173 ---------------------------------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 173 ---------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.+..+..++.+|... |++.+|+.+|..+.... .-.+.
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~---------~~~~~Al~~l~~i~~~~-~~~~~ 449 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNI---------GKYKEALRLLSPITNRE-GYQNA 449 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhc---------ccHHHHHHHHHHHhcCc-cccch
Confidence 011222334444444 99999999999998742 13356
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
.+|+.+|.||..+|.+++|+.+|++++...|++.++ ..++.++..+|+.++|++....
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 789999999999999999999999999999999998 9999999999999999865544
No 43
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.67 E-value=1e-14 Score=120.01 Aligned_cols=210 Identities=12% Similarity=0.057 Sum_probs=178.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+.-++.+|..++..|++ ..|+..|..|++.+|++..+++..|.+|..+|+...|+.-+.+++++.|+. .+....|
T Consensus 35 ~advekhlElGk~lla~~Q~-sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQL-SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 45566788999999999998 999999999999999999999999999999999999999999999999999 8889999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch---hHHHHHHHH-----HhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN---SWYNLGNAC-----LTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.++..+| .+++|...|...++.+|++.. ++..++.+- ..+..+ .+..|+...|+....+.++
T Consensus 114 ~vllK~G--------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s--~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 114 VVLLKQG--------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS--ASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhhhhcc--------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH--HhcCCchhhHHHHHHHHHh
Confidence 9999887 499999999999999996542 222222111 111000 0022899999999999999
Q ss_pred chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.. |.+...+...+.||...|++..|+..++.+-++..++... ..++.++...|+.+.+++...+++++++
T Consensus 184 i~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp 254 (504)
T KOG0624|consen 184 IQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP 254 (504)
T ss_pred cC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence 55 9999999999999999999999999999999999999888 9999999999999999977777766544
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=129.86 Aligned_cols=219 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcc--cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVV--PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
.+++.|+++|...... +......+-.++...++.. .++ .+|-.+-..++..+..++.++.+.|.+-+..|++++
T Consensus 433 ~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~-~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dk 508 (840)
T KOG2003|consen 433 GDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDF-ADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDK 508 (840)
T ss_pred cCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccch-hHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHH
Confidence 4455555555544321 1222222333344344332 244 556666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|...|+.++..+... .+++++|..+..+| ++++|+.+|-+.-.+--++.++++.++.+|..+
T Consensus 509 a~~~ykeal~ndasc~ealfniglt~e~~~--------~ldeald~f~klh~il~nn~evl~qianiye~l--------- 571 (840)
T KOG2003|consen 509 AAEFYKEALNNDASCTEALFNIGLTAEALG--------NLDEALDCFLKLHAILLNNAEVLVQIANIYELL--------- 571 (840)
T ss_pred HHHHHHHHHcCchHHHHHHHHhcccHHHhc--------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---------
Confidence 666666666555544 56666666665554 366666666655555555566666666666666
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
.+..+|++++.++...- |.+|.++..+|.+|-+.|+-.+|..++-...+..|.+... .+++..+....-.++++..+
T Consensus 572 ed~aqaie~~~q~~sli--p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ 649 (840)
T KOG2003|consen 572 EDPAQAIELLMQANSLI--PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYF 649 (840)
T ss_pred hCHHHHHHHHHHhcccC--CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 66666666666666533 6666666666666666666666666666666666665555 56665555555555555555
Q ss_pred hhhhhH
Q 020060 276 AKTKRV 281 (331)
Q Consensus 276 ~~a~~l 281 (331)
++|.-+
T Consensus 650 ekaali 655 (840)
T KOG2003|consen 650 EKAALI 655 (840)
T ss_pred HHHHhc
Confidence 555433
No 45
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=2.7e-14 Score=137.29 Aligned_cols=190 Identities=12% Similarity=-0.036 Sum_probs=160.8
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhc
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMA 146 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g 146 (331)
.+...|++ ++|+..|+++++..|..+ .+...+|.+|...|++++|+.+|+++++..|.+ .....++.++...|
T Consensus 246 ~Ll~~g~~-~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRY-KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 44577997 999999999999864322 244446999999999999999999999888765 34555666666554
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCC---------------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKD---------------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
++++|+..++++....|.. ..++..++.++... |++++|+..+++++.
T Consensus 325 --------~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~---------g~~~eA~~~l~~al~ 387 (765)
T PRK10049 325 --------NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS---------NDLPQAEMRARELAY 387 (765)
T ss_pred --------cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Confidence 6999999999999987732 23567888899888 999999999999999
Q ss_pred chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 212 DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.. |.++.++..+|.++...|++++|+..+++++.++|++... ...+.+...++++.+|...+.++.+..
T Consensus 388 ~~--P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 388 NA--PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred hC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 54 9999999999999999999999999999999999999988 899999999999999998887777554
No 46
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=2.3e-14 Score=137.81 Aligned_cols=200 Identities=10% Similarity=0.010 Sum_probs=168.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCCh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDL 115 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~ 115 (331)
+++++|+..++.+..... ..+..+..+ +|.++...|++ ++|+.+|++++..+|.. ......++.++...|++
T Consensus 251 g~~~eA~~~~~~ll~~~~-~~P~~a~~~--la~~yl~~g~~-e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQ-IIPPWAQRW--VASAYLKLHQP-EKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred hhHHHHHHHHHHhhccCC-CCCHHHHHH--HHHHHHhcCCc-HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 457788888887764311 112333333 58899999997 99999999999988876 45677888899999999
Q ss_pred hHHHHHHHHHHhcCCC-------------h---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 116 PAAKNCFNLALSKGPN-------------K---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~-------------~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
++|+..++++....|. + .++..++.++...| ++++|+..+++++...|.++.++..
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g--------~~~eA~~~l~~al~~~P~n~~l~~~ 398 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN--------DLPQAEMRARELAYNAPGNQGLRID 398 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999988763 1 35667888888776 5999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHH
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQ 259 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 259 (331)
+|.++... |++++|+..+++++... |+++.+++.+|.++...|++++|...++++++..|+++....+.
T Consensus 399 lA~l~~~~---------g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 399 YASVLQAR---------GWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999998 99999999999999965 99999999999999999999999999999999999998654444
Q ss_pred HHH
Q 020060 260 MMV 262 (331)
Q Consensus 260 ~~~ 262 (331)
...
T Consensus 468 ~~~ 470 (765)
T PRK10049 468 RAR 470 (765)
T ss_pred HHH
Confidence 444
No 47
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=6.1e-15 Score=120.57 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=173.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....-..+|++|..+|-+ .+|...++.+++..|. ++.+..|+.+|.+..+...|+..|...+...|.+ ..+...+.
T Consensus 221 ~dwwWk~Q~gkCylrLgm~-r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 221 LDWWWKQQMGKCYLRLGMP-RRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred HhHHHHHHHHHHHHHhcCh-hhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 3344445699999999997 9999999999998774 7889999999999999999999999999999999 77888999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++..++ ++++|.++|+.+++.+|.+.++.--+|..|+.. ++.+-|+.+|++.+... -.+|+
T Consensus 299 i~eam~--------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~---------~~PE~AlryYRRiLqmG--~~spe 359 (478)
T KOG1129|consen 299 IHEAME--------QQEDALQLYKLVLKLHPINVEAIACIAVGYFYD---------NNPEMALRYYRRILQMG--AQSPE 359 (478)
T ss_pred HHHHHH--------hHHHHHHHHHHHHhcCCccceeeeeeeeccccC---------CChHHHHHHHHHHHHhc--CCChH
Confidence 999886 599999999999999999999888888888776 99999999999999966 89999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
.+.|+|.|....++++-++..|++++....+... . .+++.+....|++.-|...|.-++
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL 422 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHh
Confidence 9999999999999999999999999997654333 3 788888888888888776666555
No 48
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=1.7e-12 Score=102.84 Aligned_cols=191 Identities=14% Similarity=0.038 Sum_probs=161.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
+...++-....+....|+. +.|..++++.....|+...+-...|..+...|++++|+++|...++-+|.+ ..+-..-.
T Consensus 50 e~w~l~EqV~IAAld~~~~-~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRD-DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred hHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 4445555666677788895 999999999998899999999999999999999999999999999999999 55555555
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+...+|. -.+|++.+...++.++.+.++|..++.+|+.. |+|++|.-+++..+-.+ |.++-
T Consensus 129 ilka~GK--------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~---------~~f~kA~fClEE~ll~~--P~n~l 189 (289)
T KOG3060|consen 129 ILKAQGK--------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSE---------GDFEKAAFCLEELLLIQ--PFNPL 189 (289)
T ss_pred HHHHcCC--------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH---------hHHHHHHHHHHHHHHcC--CCcHH
Confidence 6666663 56999999999999999999999999999999 99999999999999855 99999
Q ss_pred HHhhHHHHHHHhh---cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 221 LYFNCATVNKYLE---NYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 221 ~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
.+..+|.+++.+| ++.-|.++|.+++++.|.+... .++..+-..+.+...+.
T Consensus 190 ~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~ 245 (289)
T KOG3060|consen 190 YFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAE 245 (289)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999776 5778999999999999966655 66655555555554444
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2.1e-14 Score=128.52 Aligned_cols=228 Identities=10% Similarity=0.045 Sum_probs=161.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
++.+.+...+...... .+.....+....+.++...|++ ++|...+++.++..|+++.++..++.++...|++++|.
T Consensus 132 g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~-~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 132 GDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNEL-HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred CCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 5556666666654321 2222223444568888888887 88999999999999999999999999999999999888
Q ss_pred HHHHHHHhcCCCh--HH-----HhhHHHH---------------HHHhccC---c----------hhHHHHHHHHHHHHH
Q 020060 120 NCFNLALSKGPNK--KI-----LCQLSML---------------ERSMAQG---S----------ENQAEIVEESIQHAK 164 (331)
Q Consensus 120 ~~~~~al~~~~~~--~~-----~~~l~~~---------------~~~~g~~---~----------~~~~~~~~~A~~~~~ 164 (331)
..+.+..+....+ .. ....+.. ....... . ....|++++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8888888664322 11 0000000 0000000 0 004456888999999
Q ss_pred HHhcCCCCCchhH--HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh--hHHhhHHHHHHHhhcHHHHHH
Q 020060 165 EAITLDVKDGNSW--YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP--DLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 165 ~al~~~p~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~la~~~~~~g~~~~A~~ 240 (331)
++++..|++.... .......... ++.+.++..++++++.. |+++ .....+|.++...|++++|.+
T Consensus 288 ~~l~~~pd~~~~~~~~l~~~~~l~~---------~~~~~~~~~~e~~lk~~--p~~~~~~ll~sLg~l~~~~~~~~~A~~ 356 (409)
T TIGR00540 288 DGLKKLGDDRAISLPLCLPIPRLKP---------EDNEKLEKLIEKQAKNV--DDKPKCCINRALGQLLMKHGEFIEAAD 356 (409)
T ss_pred HHHhhCCCcccchhHHHHHhhhcCC---------CChHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHHcccHHHHHH
Confidence 9988888876532 1122222222 67788899999998844 9999 888899999999999999999
Q ss_pred HHH--HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 241 GFE--ASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 241 ~~~--~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
+|+ ++++..|+......++.++..+|+.++|.+.+.+++.+.
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999 688888987777899999999999999999999886553
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=2.6e-14 Score=131.55 Aligned_cols=209 Identities=17% Similarity=0.169 Sum_probs=175.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
....|++|.++...+++ ..|.+.|...+..+|...+++..+|.+-...++..+|...+..++..+..+ .++..+|..+
T Consensus 496 lt~~YNlarl~E~l~~~-~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~ 574 (1018)
T KOG2002|consen 496 LTLKYNLARLLEELHDT-EVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLH 574 (1018)
T ss_pred hHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHH
Confidence 44588999999999997 999999999999999999999999977778889999999999999888777 5555555443
Q ss_pred HHhccC----------------------------------------chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 143 RSMAQG----------------------------------------SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 143 ~~~g~~----------------------------------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
...... .....+.+++|++.|.++++.+|.+..+-+.+|.
T Consensus 575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI 654 (1018)
T ss_pred HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence 322110 0115667999999999999999999999999999
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC-C-CcHH-HHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP-S-LNAT-EEVQ 259 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~-~~~~-~~l~ 259 (331)
++... |++.+|...|.++.... .+++++|.|+|.||..+|+|..|++.|+.+++..- . +... ..++
T Consensus 655 VLA~k---------g~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 655 VLAEK---------GRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhhhc---------cCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 99988 99999999999999843 77899999999999999999999999999998644 3 3334 8999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 260 MMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 260 ~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+++...|.+.++.....+|+++.+.
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCc
Confidence 9999999999999988888876553
No 51
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.64 E-value=3.6e-14 Score=126.67 Aligned_cols=222 Identities=19% Similarity=0.173 Sum_probs=175.3
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhC
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g 113 (331)
+..|++.+.+... ...+.-+.....+|.+|...++| .+|+..|++++.+ +|.-+.++.+||.+|...|
T Consensus 222 ~k~Al~~l~k~~G---~~hl~va~~l~~~a~~y~~~~k~-~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G 297 (508)
T KOG1840|consen 222 CKQALRILEKTSG---LKHLVVASMLNILALVYRSLGKY-DEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG 297 (508)
T ss_pred HHHHHHHHHHccC---ccCHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC
Confidence 3444555443332 24556666676799999999998 9999999999986 3455778999999999999
Q ss_pred ChhHHHHHHHHHHhcCCC-----h----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--------CCCchh
Q 020060 114 DLPAAKNCFNLALSKGPN-----K----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--------VKDGNS 176 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~-----~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~ 176 (331)
++++|..++++++++... . ..+.+++.++..++ ++++|+.++++++++. |.-+..
T Consensus 298 Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~--------~~Eea~~l~q~al~i~~~~~g~~~~~~a~~ 369 (508)
T KOG1840|consen 298 KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMN--------EYEEAKKLLQKALKIYLDAPGEDNVNLAKI 369 (508)
T ss_pred ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhc--------chhHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 999999999999977533 1 46667888888665 5999999999988752 244668
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh------cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc--
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER------MKSNPDLYFNCATVNKYLENYERALSGFEASALK-- 248 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 248 (331)
+.+||.+|..+ |++++|.+.|++++.... .+.....+.++|..+.+++++.+|...|..+..+
T Consensus 370 ~~nl~~l~~~~---------gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 370 YANLAELYLKM---------GKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred HHHHHHHHHHh---------cchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 89999999999 999999999999997321 1233455899999999999999999999998875
Q ss_pred --CCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 249 --DPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 249 --~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.|+++. . .+++.+|..+|++++|++...++.+....
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 344433 4 99999999999999999888888766554
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=2.2e-14 Score=122.13 Aligned_cols=194 Identities=16% Similarity=0.095 Sum_probs=141.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
-.+.++.+.|++.+..|++ ++|.+.|++++..+....++++++|..+..+|+.++|+.+|-+.-.+-.++ .+++.++.
T Consensus 488 yn~~a~~nkgn~~f~ngd~-dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDL-DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcH-HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455677788888888887 888888888888888888888888888888888888888888877766666 77888888
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc-------------------------CCCC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT-------------------------GSWD 195 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-------------------------~~~~ 195 (331)
+|..+. +..+|++.+.++..+-|++|.++..||.+|-...... .+.+
T Consensus 567 iye~le--------d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid 638 (840)
T KOG2003|consen 567 IYELLE--------DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID 638 (840)
T ss_pred HHHHhh--------CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh
Confidence 887764 4777888888887777877777777776665430000 0013
Q ss_pred hhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 196 HSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
..-+++|+.+|+++.-.. |........++.|+.+.|+|.+|+..|+..-+..|.+... .-+-++...+|
T Consensus 639 tqf~ekai~y~ekaaliq--p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 639 TQFSEKAINYFEKAALIQ--PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred hHHHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 366677888888777633 7777777777888888888888888888888888887765 44444444443
No 53
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=6e-14 Score=121.79 Aligned_cols=208 Identities=16% Similarity=0.162 Sum_probs=174.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
+.-.-.+|+..+...+| ..|+++|..++.++ .+...+.+.+.+|+..|.+...+.....+++..... .-+..++.++
T Consensus 224 a~~ek~lgnaaykkk~f-~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~ 301 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDF-ETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKAL 301 (539)
T ss_pred hhHHHHHHHHHHHhhhH-HHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHH
Confidence 44566789999999998 99999999999999 888899999999999999999999999998887776 3333466666
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCC--------------------------CCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLD--------------------------VKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
..+|..+... ++++.|+.+|.+++... |.-..--..-|+.++..
T Consensus 302 ~r~g~a~~k~-~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~--------- 371 (539)
T KOG0548|consen 302 ARLGNAYTKR-EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKK--------- 371 (539)
T ss_pred HHhhhhhhhH-HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhc---------
Confidence 6665544433 66888888888887632 22223334557777777
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
|+|..|+..|.++|+.+ |+++..|.|+|.||..+|.+..|+...+.+++++|++... ..-|.++..+.++++|++.|
T Consensus 372 gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999955 9999999999999999999999999999999999999998 88899999999999999999
Q ss_pred hhhhhHHHHH
Q 020060 276 AKTKRVASLA 285 (331)
Q Consensus 276 ~~a~~l~~~~ 285 (331)
.+++.+++..
T Consensus 450 ~eale~dp~~ 459 (539)
T KOG0548|consen 450 QEALELDPSN 459 (539)
T ss_pred HHHHhcCchh
Confidence 9999887543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=5.7e-14 Score=125.13 Aligned_cols=190 Identities=11% Similarity=0.034 Sum_probs=147.6
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----------------
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---------------- 132 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------- 132 (331)
..+.++...|++ ++|+..+++..+.+|+++.++..++.+|...|++++|+..+.+..+..+.+
T Consensus 158 ~~a~l~l~~g~~-~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 158 TRVRIQLARNEN-HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 447788888887 888888888888888888888888888888888888887777766554332
Q ss_pred ---------------------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 133 ---------------------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 133 ---------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
.....++..+.. .|+.++|...++++++. |.++......+.+
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~--------~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l-- 305 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIE--------CDDHDTAQQIILDGLKR-QYDERLVLLIPRL-- 305 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--
Confidence 111122223332 34578888888888874 3344333333332
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLL 265 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l 265 (331)
.. +++++++...++.++. .|+++..+..+|.++...|++++|..+|+++++..|++.....++.++..+
T Consensus 306 ~~---------~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~ 374 (398)
T PRK10747 306 KT---------NNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL 374 (398)
T ss_pred cC---------CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 22 7888999999999884 499999999999999999999999999999999999987778899999999
Q ss_pred HHHHHHHHhhhhhhhH
Q 020060 266 DKIENLLKGHAKTKRV 281 (331)
Q Consensus 266 ~~~~~a~~~~~~a~~l 281 (331)
|+.++|...|.+++.+
T Consensus 375 g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 375 HKPEEAAAMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988764
No 55
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=5.7e-14 Score=112.35 Aligned_cols=154 Identities=8% Similarity=0.049 Sum_probs=125.7
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCc
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGS 149 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~ 149 (331)
+..|+..|++ +......++.. +|.. -+...++.++++..++++++.+|++ ..|..+|.++...|
T Consensus 23 ~~~Y~~~g~~-~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--- 87 (198)
T PRK10370 23 VGSYLLSPKW-QAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--- 87 (198)
T ss_pred HHHHHHcchH-HHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC---
Confidence 4567788887 65433332211 1211 1113677889999999999999999 99999999999887
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH-HhhhhhcCCCChhh--HHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC-LTSFFVTGSWDHSK--LLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
++++|+..|+++++++|+++.++..+|.++ ... |+ +++|...++++++.+ |+++.+++++|
T Consensus 88 -----~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~---------g~~~~~~A~~~l~~al~~d--P~~~~al~~LA 151 (198)
T PRK10370 88 -----DYDNALLAYRQALQLRGENAELYAALATVLYYQA---------GQHMTPQTREMIDKALALD--ANEVTALMLLA 151 (198)
T ss_pred -----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHhC--CCChhHHHHHH
Confidence 599999999999999999999999999975 555 55 599999999999955 99999999999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 227 TVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.++...|++++|+.+|+++++..|.+...
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999998886654
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.61 E-value=4.5e-13 Score=110.46 Aligned_cols=185 Identities=15% Similarity=0.228 Sum_probs=158.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HH
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KI 134 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~ 134 (331)
..+....+++.+|.+|..+|+- ..|+..+.+++++.|++..+....|.+++.+|++++|..-|+.++..+|++ .+
T Consensus 67 ~dp~~Y~aifrRaT~yLAmGks-k~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 67 GDPNNYQAIFRRATVYLAMGKS-KAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred CCchhHHHHHHHHHHHhhhcCC-ccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 4456778889999999999995 999999999999999999999999999999999999999999999999966 33
Q ss_pred HhhHHHHHHH--hccC--chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 135 LCQLSMLERS--MAQG--SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 135 ~~~l~~~~~~--~g~~--~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
...++.+... +-.. ..--.|+...|+.+....+++.|.+...+...+.||... |+...|+.-+..+-
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~---------~e~k~AI~Dlk~as 216 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAE---------GEPKKAIHDLKQAS 216 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhc---------CcHHHHHHHHHHHH
Confidence 3333222111 1000 000125788999999999999999999999999999988 99999999999999
Q ss_pred hchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 211 KDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
++. .++.+.++.++.+++..|+.+.++.-.+.+++++|++...
T Consensus 217 kLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C 259 (504)
T KOG0624|consen 217 KLS--QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC 259 (504)
T ss_pred hcc--ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH
Confidence 965 9999999999999999999999999999999999998753
No 57
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=1.8e-13 Score=125.30 Aligned_cols=204 Identities=17% Similarity=0.189 Sum_probs=176.0
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
..+.++..|+.++..|++ ++|++.+.++|+++|.++.+|+.||.+|.++|+.++|..++-.|-.++|++ +.|..++..
T Consensus 138 ~l~~ll~eAN~lfarg~~-eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDL-EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 356677888999999997 999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-------
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER------- 214 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------- 214 (331)
...+| ++.+|.-+|.+|++.+|.+.......+.+|..+ |+...|+..|.+.+....
T Consensus 217 s~~~~--------~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~---------G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 217 SEQLG--------NINQARYCYSRAIQANPSNWELIYERSSLYQKT---------GDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred HHhcc--------cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh---------ChHHHHHHHHHHHHhhCCchhHHHH
Confidence 99886 599999999999999999998888888888876 666666666665544220
Q ss_pred --------------------------------------------------------------------------------
Q 020060 215 -------------------------------------------------------------------------------- 214 (331)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (331)
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~ 359 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDER 359 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhh
Confidence
Q ss_pred --------------------------------------------------cCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 215 --------------------------------------------------MKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 215 --------------------------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
..++++.++.++..+...|+|.+|+.+|..
T Consensus 360 ~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 360 RREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred ccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 002345588899999999999999999999
Q ss_pred HHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 245 SALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 245 al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.....+.... . ..+|.++..++.++.|+..|.++..+.|.
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 9988877654 3 99999999999999999999999976653
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.61 E-value=1.2e-13 Score=114.59 Aligned_cols=174 Identities=15% Similarity=0.080 Sum_probs=145.9
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.++..+..++.+|..+...|++++|+..|++++...|++ .+++.+|.++...| ++++|+..++++++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--------~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--------DYAEAIAAADRFIRL 99 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999976 57899999999886 599999999999999
Q ss_pred CCCCch---hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH-----------------hhHHHHH
Q 020060 170 DVKDGN---SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-----------------FNCATVN 229 (331)
Q Consensus 170 ~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------------~~la~~~ 229 (331)
+|+++. +++.+|.++.... .......|++++|+..|++++... |.+...+ ..+|.++
T Consensus 100 ~p~~~~~~~a~~~~g~~~~~~~-~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 100 HPNHPDADYAYYLRGLSNYNQI-DRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred CcCCCchHHHHHHHHHHHHHhc-ccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887 6889999987541 111113388999999999999854 8876442 4678899
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCc---HH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 230 KYLENYERALSGFEASALKDPSLN---AT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 230 ~~~g~~~~A~~~~~~al~~~~~~~---~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
...|++.+|+..|++++...|+.+ .+ ..++.++..+|++++|.+.+...
T Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999988764 34 89999999999999998765543
No 59
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.61 E-value=1.8e-13 Score=127.89 Aligned_cols=151 Identities=8% Similarity=-0.076 Sum_probs=137.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQH 162 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~ 162 (331)
++.-......-.|.+++++.+||.+....|.+++|...+++++++.|++ .++..++.++.+.+ ++++|+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--------~~eeA~~~ 142 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--------GIEAGRAE 142 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--------cHHHHHHH
Confidence 3333334444578899999999999999999999999999999999999 99999999999775 69999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 163 AKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
+++++..+|+++..++.+|.++... |++++|+..|++++... |+++.++.++|.++...|+.++|...|
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~---------g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEI---------GQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHh---------cchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999999999999999 99999999999999844 999999999999999999999999999
Q ss_pred HHHHhcCCCCc
Q 020060 243 EASALKDPSLN 253 (331)
Q Consensus 243 ~~al~~~~~~~ 253 (331)
++++....+-.
T Consensus 212 ~~a~~~~~~~~ 222 (694)
T PRK15179 212 QAGLDAIGDGA 222 (694)
T ss_pred HHHHHhhCcch
Confidence 99999876644
No 60
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.61 E-value=6.3e-14 Score=125.10 Aligned_cols=208 Identities=16% Similarity=0.115 Sum_probs=170.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 129 (331)
..|....+...+|..|...|+| +.|+..++.+++. .|.-......+|.+|...+++.+|+..|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~-e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRL-EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 5566777777899999999998 9999999999998 56666677779999999999999999999999764
Q ss_pred ----CCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--------CCCchhHHHHHHHHHhhhhhcCC
Q 020060 130 ----PNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--------VKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 130 ----~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
+++ .++.+||.+|...| ++++|..++++|+++. |.-+..+.+++.++..+
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~G--------Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~------ 338 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQG--------KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM------ 338 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh------
Confidence 233 67888999999776 5999999999888753 33345677888888888
Q ss_pred CChhhHHHHHHHHHHHHhchh---cCCC---hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC--------CCcHH-HHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDER---MKSN---PDLYFNCATVNKYLENYERALSGFEASALKDP--------SLNAT-EEV 258 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~-~~l 258 (331)
+++++|+.++++++++-. .+.+ +..+.++|.+|..+|+|.+|...|++++.+.. ..... ..+
T Consensus 339 ---~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 339 ---NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred ---cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 999999999999997321 1233 45589999999999999999999999998642 12223 888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 259 QMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 259 ~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+..+.+++++.+|.+.|.++..+...
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHH
Confidence 88889999999999999999988743
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=3e-13 Score=110.54 Aligned_cols=213 Identities=19% Similarity=0.157 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCC
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLGSCIWKKGD 114 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~ 114 (331)
++-++|++.+-++.. ..+........+|+.+...|.. +.||..-+..+ ..|+. ..+...||.-|+..|-
T Consensus 49 ~Q~dKAvdlF~e~l~----~d~~t~e~~ltLGnLfRsRGEv-DRAIRiHQ~L~-~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 49 NQPDKAVDLFLEMLQ----EDPETFEAHLTLGNLFRSRGEV-DRAIRIHQTLL-ESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred cCcchHHHHHHHHHh----cCchhhHHHHHHHHHHHhcchH-HHHHHHHHHHh-cCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 333444444444333 2333444444445555555552 44444333222 22322 1234444444455555
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhhh
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD-----GNSWYNLGNACLTSF 188 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~ 188 (331)
++.|...|........-. .++..+-.+|. ..+++++|++..++...+.+.. +..+..|+..+...
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ--------~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~- 193 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQ--------ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS- 193 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh-
Confidence 555555554443322111 44444444444 2234555555555555555433 22334444444444
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--EEVQMMVNLLD 266 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~~~~l~ 266 (331)
.+.+.|+..+.++++.+ |.+..+-..+|.++...|+|..|++.++.+++.+|+...- ..+..+|..+|
T Consensus 194 --------~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 194 --------SDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred --------hhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 55555666666665533 5555555556666666666666666666666666554442 55555555555
Q ss_pred HHHHHHHhhhh
Q 020060 267 KIENLLKGHAK 277 (331)
Q Consensus 267 ~~~~a~~~~~~ 277 (331)
+..+...-..+
T Consensus 264 ~~~~~~~fL~~ 274 (389)
T COG2956 264 KPAEGLNFLRR 274 (389)
T ss_pred CHHHHHHHHHH
Confidence 55555544333
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.60 E-value=4.1e-14 Score=113.14 Aligned_cols=121 Identities=15% Similarity=0.237 Sum_probs=111.0
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH-HHhccCchhHHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE-RSMAQGSENQAE 154 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~-~~~g~~~~~~~~ 154 (331)
.++. ++++..++++++.+|+++++|..+|.+|...|++++|+..|++++++.|++ ..+..+|.++ ...|. .
T Consensus 52 ~~~~-~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~------~ 124 (198)
T PRK10370 52 QQTP-EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ------H 124 (198)
T ss_pred chhH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC------C
Confidence 5665 889999999999999999999999999999999999999999999999999 8999999975 55442 1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
.+++|...++++++.+|+++.+++.+|.++... |++++|+.+|+++++..
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~---------g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQ---------ADYAQAIELWQKVLDLN 174 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC
Confidence 259999999999999999999999999999999 99999999999999854
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=5.2e-13 Score=109.19 Aligned_cols=216 Identities=14% Similarity=0.080 Sum_probs=177.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
..++.|+.+-..+...+......+..+++.+|.-|+..|-+ +.|...|........--..+...|-.+|....+|++|+
T Consensus 83 GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~-DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAI 161 (389)
T COG2956 83 GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL-DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAI 161 (389)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHH
Confidence 55667777666665443334557788999999999999998 99999999988766666789999999999999999999
Q ss_pred HHHHHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 120 NCFNLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 120 ~~~~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
+.-++..++.+.. ..++.++..+. ...+++.|+..+.+|++.+|++..+-..+|.+....
T Consensus 162 d~A~~L~k~~~q~~~~eIAqfyCELAq~~~--------~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~------ 227 (389)
T COG2956 162 DVAERLVKLGGQTYRVEIAQFYCELAQQAL--------ASSDVDRARELLKKALQADKKCVRASIILGRVELAK------ 227 (389)
T ss_pred HHHHHHHHcCCccchhHHHHHHHHHHHHHh--------hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhc------
Confidence 9999999999876 44555666655 335699999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
|+|++|++.++++++.+ |.. +.+.-.+..+|..+|+.++....+.++.+..+.......+........-.+.|.
T Consensus 228 ---g~y~~AV~~~e~v~eQn--~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq 302 (389)
T COG2956 228 ---GDYQKAVEALERVLEQN--PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQ 302 (389)
T ss_pred ---cchHHHHHHHHHHHHhC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHH
Confidence 99999999999999854 654 567889999999999999999999999999888665555555555555555555
Q ss_pred Hhh
Q 020060 273 KGH 275 (331)
Q Consensus 273 ~~~ 275 (331)
...
T Consensus 303 ~~l 305 (389)
T COG2956 303 AYL 305 (389)
T ss_pred HHH
Confidence 333
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=3.5e-13 Score=113.57 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=103.6
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
-|+.-|...+..++| ..|+.+-.++|+.+|.+..++...|..+...|+.++|+-.|+.+..+.|.. ..+..+-.+|..
T Consensus 302 ~wfV~~~~l~~~K~~-~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKF-ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhhhhhhhhhhH-HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 344445555555554 555555555555555555555555555555555555555555555555555 555555555554
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHH-HHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLG-NACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
.| .+.+|.-..+.+++..|.++.++..+| .++... ..--++|...++++++++ |....+-.
T Consensus 381 ~~--------~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d--------p~~rEKAKkf~ek~L~~~--P~Y~~AV~ 442 (564)
T KOG1174|consen 381 QK--------RFKEANALANWTIRLFQNSARSLTLFGTLVLFPD--------PRMREKAKKFAEKSLKIN--PIYTPAVN 442 (564)
T ss_pred hc--------hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC--------chhHHHHHHHHHhhhccC--CccHHHHH
Confidence 43 355555555555555555555555554 222211 122345555555555533 55555555
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 224 NCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 224 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.+|..+..-|.+..++..+++.+...|+..-...+|.++...+.+.+++..|.+|++++|
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 555555555555555555555555555544445555555555555555555555555443
No 65
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=9.1e-13 Score=116.91 Aligned_cols=202 Identities=19% Similarity=0.148 Sum_probs=182.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML 141 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~ 141 (331)
....+|+..+.-+...|+. ..|...+.++++.+|++.+.|...-.+.....+++.|...|.++....|+..+|+.-+.+
T Consensus 582 kae~lwlM~ake~w~agdv-~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDV-PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANL 660 (913)
T ss_pred cchhHHHHHHHHHHhcCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHH
Confidence 3345677788888899996 999999999999999999999999999999999999999999999999998999998888
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
.+.++ +.++|+..++++++..|.....|..+|.++..+ ++.+.|...|...++.. |..+-+
T Consensus 661 er~ld--------~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~---------~~ie~aR~aY~~G~k~c--P~~ipL 721 (913)
T KOG0495|consen 661 ERYLD--------NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQM---------ENIEMAREAYLQGTKKC--PNSIPL 721 (913)
T ss_pred HHHhh--------hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHH---------HHHHHHHHHHHhccccC--CCCchH
Confidence 88775 599999999999999999999999999999999 99999999999999977 999999
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|..++.+-...|+...|...++++...+|.+... ...-++..+.|..+.|.....+|++--+
T Consensus 722 WllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 722 WLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999887 6666777888888888766666654433
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.5e-13 Score=114.43 Aligned_cols=205 Identities=12% Similarity=0.103 Sum_probs=177.8
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 34 KVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 34 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
......+++..|+...++... ..+.....+...|..+...++. ++|+-.|+.|..+.|...+.|.+|-.+|...|
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~----~~~r~~~alilKG~lL~~~~R~-~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCID----SEPRNHEALILKGRLLIALERH-TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhc----cCcccchHHHhccHHHHhccch-HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 444566888889888888775 5567778899999999999996 99999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh-HHHhhHH-HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc
Q 020060 114 DLPAAKNCFNLALSKGPNK-KILCQLS-MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-~~~~~l~-~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 191 (331)
.+.+|...-+.++...|.+ ..+..+| .++..-. .--++|.+++++++++.|....+...++.++...
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp-------~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~E---- 451 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDP-------RMREKAKKFAEKSLKINPIYTPAVNLIAELCQVE---- 451 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCc-------hhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhh----
Confidence 9999999999999999988 7777776 5554332 1368999999999999999999999999999988
Q ss_pred CCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
|.+++++..+++.+.. ..+...+..+|.++...+.+++|+.+|..|+.++|++... .++..+.
T Consensus 452 -----g~~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 452 -----GPTKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred -----CccchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 9999999999999963 4566789999999999999999999999999999998865 4444433
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.3e-14 Score=117.93 Aligned_cols=211 Identities=18% Similarity=0.138 Sum_probs=161.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.-....|..++...+| ..|+..+..|+++.|+++..|.+.+.+++..|+|++|.-..++.++++|.. ......+.
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y-~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~ 125 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTY-GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQ 125 (486)
T ss_pred HHHHHHHhhcchHHHHhhH-HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhh
Confidence 4445566677777778887 788888888888888888888888888888888888888887777777665 33333333
Q ss_pred HHHHhccCchh---------------------------------------------------------------------
Q 020060 141 LERSMAQGSEN--------------------------------------------------------------------- 151 (331)
Q Consensus 141 ~~~~~g~~~~~--------------------------------------------------------------------- 151 (331)
++..++.....
T Consensus 126 c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~a 205 (486)
T KOG0550|consen 126 CHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEA 205 (486)
T ss_pred hhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHH
Confidence 33322211000
Q ss_pred ---------HHHHHHHHHHHHHHHhcCCCCCch------------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 152 ---------QAEIVEESIQHAKEAITLDVKDGN------------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 152 ---------~~~~~~~A~~~~~~al~~~p~~~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
-..+.+.|+..|++++.++|++.. .|..-|+-.+.. |++.+|.++|..+|
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~---------G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN---------GNYRKAYECYTEAL 276 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc---------cchhHHHHHHHHhh
Confidence 123467788888888888887542 344556666666 99999999999999
Q ss_pred hchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 211 KDERMKSNP----DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 211 ~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++ |.+. .+|.++|.+...+|+..+|+.....++.++|....+ ...+.++..++++++|+..+.+|.++...
T Consensus 277 ~id--P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 277 NID--PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred cCC--ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 965 7754 459999999999999999999999999999999998 99999999999999999999999876543
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.55 E-value=4.2e-13 Score=118.35 Aligned_cols=201 Identities=11% Similarity=-0.047 Sum_probs=120.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+.+..+..+|.++...|+. +.+...+.++....|.. .+.....|.++...|++++|...++++++..|++ .++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGER-PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 4455666667666666665 66666666666655533 4455666677777777777777777777777766 33332
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+..+..+|. ..+....+.+.+.......|.....+..+|.++... |++++|+..+++++... |.
T Consensus 83 -~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~---------G~~~~A~~~~~~al~~~--p~ 146 (355)
T cd05804 83 -HLGAFGLGD----FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEA---------GQYDRAEEAARRALELN--PD 146 (355)
T ss_pred -hHHHHHhcc----cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--CC
Confidence 334443332 111233333333333334455555555666666666 77777777777777644 77
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-----HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-----EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
++.++..+|.++...|++++|..++++++...|..+.. ..++.++...|++++|+..+.++.
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 76667777777777777777777777777666543221 346666677777777776666654
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.55 E-value=6.5e-13 Score=126.42 Aligned_cols=191 Identities=10% Similarity=-0.008 Sum_probs=160.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhh
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQ 137 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 137 (331)
+..+...+..+.+....|++ +.|+..|+++++.+|.++.+...+..++...|+.++|+.++++++ +|.+ ..+..
T Consensus 31 p~~~~~~y~~aii~~r~Gd~-~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~lla 107 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDT-APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLAS 107 (822)
T ss_pred ccchhHHHHHHHHHHhCCCH-HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHH
Confidence 34566788899999999998 999999999999999996555588899999999999999999999 5544 44445
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++...| ++++|++.|+++++.+|+++.++..++.++... ++.++|+..+++++... |.
T Consensus 108 lA~ly~~~g--------dyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~---------~q~~eAl~~l~~l~~~d--p~ 168 (822)
T PRK14574 108 AARAYRNEK--------RWDQALALWQSSLKKDPTNPDLISGMIMTQADA---------GRGGVVLKQATELAERD--PT 168 (822)
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc---------CCHHHHHHHHHHhcccC--cc
Confidence 577888776 599999999999999999999999998999888 99999999999999854 76
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~ 274 (331)
+... ..++.++...++..+|+..+++++..+|++... ..+..++...|-...|.+.
T Consensus 169 ~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 169 VQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred hHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 4443 555556656777877999999999999999987 8888888888777776643
No 70
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.54 E-value=5.9e-13 Score=106.25 Aligned_cols=154 Identities=15% Similarity=0.093 Sum_probs=79.4
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
..++..+...|+- +.+..+..++..-+|.+...+..+|......|+|..|+..++++..+.|++ .+|..+|.+|.++|
T Consensus 70 ~~~a~a~~~~G~a-~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDA-DSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccc-cchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444455555552 445555555544455555555445555555555555555555555555555 55555555555444
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
++++|...|.+++++.|+.+.+..++|..+.-. |+++.|..++..+.... +.+..+..|++
T Consensus 149 --------r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~---------gd~~~A~~lll~a~l~~--~ad~~v~~NLA 209 (257)
T COG5010 149 --------RFDEARRAYRQALELAPNEPSIANNLGMSLLLR---------GDLEDAETLLLPAYLSP--AADSRVRQNLA 209 (257)
T ss_pred --------ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc---------CCHHHHHHHHHHHHhCC--CCchHHHHHHH
Confidence 355555555555555555555555555555544 55555555555555422 44555555555
Q ss_pred HHHHHhhcHHHHHHH
Q 020060 227 TVNKYLENYERALSG 241 (331)
Q Consensus 227 ~~~~~~g~~~~A~~~ 241 (331)
.+....|++++|...
T Consensus 210 l~~~~~g~~~~A~~i 224 (257)
T COG5010 210 LVVGLQGDFREAEDI 224 (257)
T ss_pred HHHhhcCChHHHHhh
Confidence 555555555555444
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=5.9e-13 Score=100.39 Aligned_cols=117 Identities=15% Similarity=0.175 Sum_probs=109.0
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
..|++++..+|++ .....+|..+...| ++++|...+++++..+|.++.+|..+|.++... |+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~---------~~ 66 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQG--------RYDEALKLFQLLAAYDPYNSRYWLGLAACCQML---------KE 66 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcc--------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---------HH
Confidence 4688999999988 78888999999776 599999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+++|+..+++++... |.++..++++|.++...|++++|+.+|+++++++|++...
T Consensus 67 ~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 67 YEEAIDAYALAAALD--PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred HHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 999999999999955 9999999999999999999999999999999999998764
No 72
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.53 E-value=1.5e-12 Score=103.95 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
..+...+-+....+|++..+ ..++..+...|+-+.+..+..++....|++ ..+..+|......| ++.+|+
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g--------~~~~A~ 120 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG--------NFGEAV 120 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc--------chHHHH
Confidence 45777777778889999999 999999999999999999999998888888 66666888888776 699999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
..++++....|+++.+|..+|.+|... |+++.|...|.+++++. |.++.+..|+|..+.-.|+++.|..
T Consensus 121 ~~~rkA~~l~p~d~~~~~~lgaaldq~---------Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 121 SVLRKAARLAPTDWEAWNLLGAALDQL---------GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred HHHHHHhccCCCChhhhhHHHHHHHHc---------cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999 99999999999999955 9999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHh
Q 020060 241 GFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 241 ~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~ 274 (331)
++..+....+.+... .+++.+....|++.+|.+.
T Consensus 190 lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 190 LLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 999999988888777 9999999999999988744
No 73
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=8e-13 Score=99.66 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=107.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
+.|++++..+|++..+.+.+|.++...|++++|...+++++..+|.+ .++..+|.++...| ++++|+.+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999988 88999999999775 6999999999
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 165 EAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 165 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+++..+|+++..++.+|.++... |++++|+..|+++++.. |++...
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLAL---------GEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhc--cccchH
Confidence 99999999999999999999998 99999999999999955 777664
No 74
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.51 E-value=3.7e-12 Score=113.11 Aligned_cols=217 Identities=17% Similarity=0.137 Sum_probs=178.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
.+++.|-.+|.+... .....++|+.-+.....++.. ++|+.+++++++..|++...|..+|.++.++++.+.|.
T Consensus 632 ~e~eraR~llakar~-----~sgTeRv~mKs~~~er~ld~~-eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR 705 (913)
T KOG0495|consen 632 DELERARDLLAKARS-----ISGTERVWMKSANLERYLDNV-EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAR 705 (913)
T ss_pred ccHHHHHHHHHHHhc-----cCCcchhhHHHhHHHHHhhhH-HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHH
Confidence 556667777766552 234567888888888889996 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
..|...++.-|.. ..|..++.+--..| ..-.|...+.++.-.+|++...|...-.+-+.. |.
T Consensus 706 ~aY~~G~k~cP~~ipLWllLakleEk~~--------~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~---------gn 768 (913)
T KOG0495|consen 706 EAYLQGTKKCPNSIPLWLLLAKLEEKDG--------QLVRARSILDRARLKNPKNALLWLESIRMELRA---------GN 768 (913)
T ss_pred HHHHhccccCCCCchHHHHHHHHHHHhc--------chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc---------CC
Confidence 9999999999998 88888888877665 488999999999999999999998887777777 88
Q ss_pred HHHHHHHHHHHHhch----------------------------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 199 LLQSLKAYQNAEKDE----------------------------RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 199 ~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
.+.|.....++++.. .-..|+.++...|..+....+++.|..+|.++++.+|
T Consensus 769 ~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 769 KEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 888888888877643 0125667788999999999999999999999999999
Q ss_pred CCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 251 SLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 251 ~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
++.++ ..+-......|.-+.-.+.+.+..
T Consensus 849 d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 849 DNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred ccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 99998 777777777775555544444433
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.8e-12 Score=109.36 Aligned_cols=170 Identities=18% Similarity=0.239 Sum_probs=148.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H------
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K------ 133 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~------ 133 (331)
..+-+..+.++...|++ ++|+..--..+++++.+.++++..|.|++..++.+.|+.+|++++.++|+. .
T Consensus 169 ~~a~~lka~cl~~~~~~-~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDY-DEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hHHHHhhhhhhhhcccc-hhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 34455678899999998 999999999999999999999999999999999999999999999999987 1
Q ss_pred ---HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 134 ---ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 134 ---~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
.+..-|.-.+ ..|++..|.++|..+|.++|++. ..|.+++.+...+ |+..+|+...
T Consensus 248 ~le~~k~~gN~~f--------k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL---------grl~eaisdc 310 (486)
T KOG0550|consen 248 KLEVKKERGNDAF--------KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL---------GRLREAISDC 310 (486)
T ss_pred HHHHHHhhhhhHh--------hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc---------CCchhhhhhh
Confidence 2222333333 34579999999999999999864 4678889999988 9999999999
Q ss_pred HHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 207 QNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 207 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+.+++++ +....++...|.|+..++++++|++.|+++++...+..
T Consensus 311 ~~Al~iD--~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 311 NEALKID--SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCE 355 (486)
T ss_pred hhhhhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 9999966 99999999999999999999999999999999887733
No 76
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.50 E-value=3.5e-12 Score=115.19 Aligned_cols=225 Identities=14% Similarity=0.039 Sum_probs=188.4
Q ss_pred hhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhC
Q 020060 35 VSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 35 ~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 113 (331)
..+......++++.++.... ..+.+..+.+.++.-|...++. +.|..+.+++++++ .+++.+|..++.++...+
T Consensus 453 ~seR~~~h~kslqale~av~----~d~~dp~~if~lalq~A~~R~l-~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQ----FDPTDPLVIFYLALQYAEQRQL-TSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHh----cCCCCchHHHHHHHHHHHHHhH-HHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 34445566677777777654 2334457888899999999996 99999999999995 457899999999999999
Q ss_pred ChhHHHHHHHHHHhcCCChH------------------------------------------------------------
Q 020060 114 DLPAAKNCFNLALSKGPNKK------------------------------------------------------------ 133 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~~------------------------------------------------------------ 133 (331)
++.+|+....-++.-.|+|.
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~ 607 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPT 607 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCccccc
Confidence 99999999999998887730
Q ss_pred --------------------------------------------HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 134 --------------------------------------------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 134 --------------------------------------------~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.|...+..+. ..++-++|..++.++-.+
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~--------~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFL--------LSGNDDEARSCLLEASKI 679 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHH--------hcCCchHHHHHHHHHHhc
Confidence 0001111111 223467888899999999
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH--HHHHHHh
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS--GFEASAL 247 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 247 (331)
+|..+..|+..|.++... |..++|.+.|..++..+ |+++.....+|.++...|+..-|.. .+..+++
T Consensus 680 ~~l~~~~~~~~G~~~~~~---------~~~~EA~~af~~Al~ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVK---------GQLEEAKEAFLVALALD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred chhhHHHHHHhhHHHHHH---------HhhHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 999999999999999999 99999999999999966 9999999999999999999988888 9999999
Q ss_pred cCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 248 KDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 248 ~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++|.++.+ ..+|.++..+|+...|...|..|..+.+
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99999999 9999999999999999999999997754
No 77
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.50 E-value=2e-12 Score=120.98 Aligned_cols=133 Identities=9% Similarity=0.080 Sum_probs=127.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.++.++|.+....|.+ ++|...++.++++.|++..++..++.++.+.+++++|+..+++++..+|++ .+++.+|.
T Consensus 84 ~~~~~~~~La~i~~~~g~~-~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 84 HTELFQVLVARALEAAHRS-DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred ccHHHHHHHHHHHHHcCCc-HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 4478899999999999998 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
++..+| ++++|+.+|++++..+|+++.+|..+|.++... |+.++|...|++++..
T Consensus 163 ~l~~~g--------~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~---------G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIG--------QSEQADACFERLSRQHPEFENGYVGWAQSLTRR---------GALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhc--------chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHh
Confidence 999887 599999999999999999999999999999999 9999999999999984
No 78
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=3.9e-12 Score=113.45 Aligned_cols=218 Identities=8% Similarity=-0.014 Sum_probs=167.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAW-LCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-~~lg~~~~~~g~~~~A 118 (331)
++++.|.+.+...+. ..+.....+...+.+....|++ +.|..++.++.+.+|+...+. ...+.++...|++++|
T Consensus 98 Gd~~~A~k~l~~~~~----~~~~p~l~~llaA~aA~~~g~~-~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 98 GDYQQVEKLMTRNAD----HAEQPVVNYLLAAEAAQQRGDE-ARANQHLERAAELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCHHHHHHHHHHHHh----cccchHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 445566666665442 1112233344446666899997 999999999999999875443 4459999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC----------------------------
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL---------------------------- 169 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---------------------------- 169 (331)
...++++.+..|++ .++..++.++...| ++++|+..+.+..+.
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~g--------dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTG--------AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999 88888999998775 466666544444432
Q ss_pred --------------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 170 --------------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 170 --------------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
.|+++.++..++..+... |+.++|...++++++. +.++......+.+ ..+++
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~---------g~~~~A~~~L~~~l~~---~~~~~l~~l~~~l--~~~~~ 310 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIEC---------DDHDTAQQIILDGLKR---QYDERLVLLIPRL--KTNNP 310 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhc---CCCHHHHHHHhhc--cCCCh
Confidence 234555666677777777 9999999999999972 5566554444444 34999
Q ss_pred HHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 236 ERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+++++..++.++.+|+++.. ..+|.++...+++.+|.+.++++..+.|.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 99999999999999999999999877544
No 79
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=5.9e-13 Score=108.22 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
++-+..-|.-++..++|.+|+..|.+|++++|++ ..+++.+.+|.++| .++.|++.++.++.++|.+..+|
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--------~~~~AVkDce~Al~iDp~yskay 152 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--------EYEDAVKDCESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--------chHHHHHHHHHHHhcChHHHHHH
Confidence 3455666777777778888888888888888877 66667777887776 37788888888888888888888
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
..||.+|..+ |++++|++.|++++.++ |++...+.+|..+-..+++..
T Consensus 153 ~RLG~A~~~~---------gk~~~A~~aykKaLeld--P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 153 GRLGLAYLAL---------GKYEEAIEAYKKALELD--PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHcc---------CcHHHHHHHHHhhhccC--CCcHHHHHHHHHHHHHhcCCC
Confidence 8888888777 78888888888888755 777777777777766666555
No 80
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=7.6e-13 Score=107.61 Aligned_cols=117 Identities=25% Similarity=0.216 Sum_probs=109.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+.-+-.-|.-++..++| .+|+..|.+||.++|+++..|.+.|.+|.++|.++.|++-.+.++.++|.. .+|..+|.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y-~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDY-QEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGL 157 (304)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4566677889999999999 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++..+| ++++|++.|+++++++|++...+.+|..+-...
T Consensus 158 A~~~~g--------k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 158 AYLALG--------KYEEAIEAYKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred HHHccC--------cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence 999997 599999999999999999998888888876655
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=2.3e-12 Score=114.27 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=150.2
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+-..|..+..+|+- ++|..+.+.++..++.....|..+|.++....+|++|+++|+.|+.+.|+| ..|..++.
T Consensus 39 eHgeslAmkGL~L~~lg~~-~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlsl 117 (700)
T KOG1156|consen 39 EHGESLAMKGLTLNCLGKK-EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSL 117 (700)
T ss_pred ccchhHHhccchhhcccch-HHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 4556777899999999995 999999999999999999999999999999999999999999999999999 88888999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-cCCC-
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-MKSN- 218 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~- 218 (331)
...+++ +++-....-.+.+++.|..-..|...+..+... |++..|....+...+... .|..
T Consensus 118 LQ~QmR--------d~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~---------g~y~~A~~il~ef~~t~~~~~s~~ 180 (700)
T KOG1156|consen 118 LQIQMR--------DYEGYLETRNQLLQLRPSQRASWIGFAVAQHLL---------GEYKMALEILEEFEKTQNTSPSKE 180 (700)
T ss_pred HHHHHH--------hhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhccCCCHH
Confidence 888876 588888888899999999999999999998888 888888877776665321 1110
Q ss_pred --------------------------------------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHH
Q 020060 219 --------------------------------------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQ 259 (331)
Q Consensus 219 --------------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~ 259 (331)
.......|.++..++++++|...|...+..+|++... ..+-
T Consensus 181 ~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 181 DYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHH
Confidence 1113455667788888888888888888888888775 5554
Q ss_pred HHH
Q 020060 260 MMV 262 (331)
Q Consensus 260 ~~~ 262 (331)
.++
T Consensus 261 ~~l 263 (700)
T KOG1156|consen 261 KAL 263 (700)
T ss_pred HHH
Confidence 444
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=6.3e-12 Score=109.42 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=129.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh--------------
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS-------------- 127 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------- 127 (331)
..+.+++.+|......+.- ..|++--.......-....+...+|..|...++++.|+.+|.+++.
T Consensus 262 n~aA~~~e~~~~~~c~~~c-~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~ 340 (539)
T KOG0548|consen 262 NIAAVYLERGKYAECIELC-EKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEA 340 (539)
T ss_pred HHHHHHHhccHHHHhhcch-HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHH
Confidence 3344455555544444442 4444433333222222233333355555555555555555555554
Q ss_pred ------------cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 128 ------------KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 128 ------------~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
++|.- .-...-|..++.. ++|..|+..|.+++..+|+++..|.+.+.||..+
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~--------gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL------- 405 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKK--------GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL------- 405 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhc--------cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH-------
Confidence 33333 2222335555544 4699999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH
Q 020060 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL 265 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l 265 (331)
|.+..|+...+++++++ |.....|..-|.++..+.+|+.|+..|+.+++.+|++... .++.++...+
T Consensus 406 --~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 406 --GEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred --hhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99999999999999966 9999999999999999999999999999999999998877 7777777654
No 83
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.45 E-value=5.8e-12 Score=94.14 Aligned_cols=104 Identities=10% Similarity=0.063 Sum_probs=77.3
Q ss_pred HhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 92 VKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 92 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
..+. ++..+..+.+|..++..|++++|...|+.+..++|.+ ..|+++|.++..+| ++.+|+..|..++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI~aY~~A~~L 98 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAIYAYGRAAQI 98 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHhc
Confidence 3445 5666777777777777777777777777777777777 77777777777664 477777777777777
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
+|++|.+++++|.+++.. |+.+.|...|+.++..
T Consensus 99 ~~ddp~~~~~ag~c~L~l---------G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 99 KIDAPQAPWAAAECYLAC---------DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCCCchHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Confidence 777777777777777777 7777777777777763
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.44 E-value=7.7e-12 Score=93.50 Aligned_cols=109 Identities=15% Similarity=0.176 Sum_probs=99.3
Q ss_pred HhcC-CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 126 LSKG-PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 126 l~~~-~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
..+. ++. ...+.+|..+...| ++++|...|+-...++|.+...|++||.++..+ |++.+|+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G--------~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~---------g~~~~AI 89 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVK--------EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ---------KHWGEAI 89 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---------hhHHHHH
Confidence 4455 555 78889999999776 599999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..|.+++.++ |++|..+++.|.|+...|+.+.|.+.|+.++......+
T Consensus 90 ~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 90 YAYGRAAQIK--IDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccCh
Confidence 9999999966 99999999999999999999999999999999875444
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.42 E-value=5e-12 Score=116.95 Aligned_cols=180 Identities=18% Similarity=0.108 Sum_probs=91.5
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSML 141 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~ 141 (331)
.++..+|.+|....+. ..|..+|++|.++++.++.++...+..|.+..+++.|....-++-+..|.. ..|..+|..
T Consensus 493 paf~~LG~iYrd~~Dm-~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDM-KRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 3444444444444442 444444444444444444444444444444444444444433333333332 233334433
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+..- +++.+|+..|+.+++.+|++...|..+|.+|... |.+.-|+..|.++..++ |.+.-.
T Consensus 572 yLea--------~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s---------Gry~~AlKvF~kAs~Lr--P~s~y~ 632 (1238)
T KOG1127|consen 572 YLEA--------HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES---------GRYSHALKVFTKASLLR--PLSKYG 632 (1238)
T ss_pred ccCc--------cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc---------CceehHHHhhhhhHhcC--cHhHHH
Confidence 3322 3456666666666666666666666666666665 66666666666666544 666666
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
.+..+.+...+|.|.+|+..+...+......... ..++.++.+
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6666666666666666666666555544443333 444444333
No 86
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.42 E-value=4e-11 Score=96.65 Aligned_cols=180 Identities=17% Similarity=0.132 Sum_probs=123.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K 133 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~ 133 (331)
...+..++..|..++..|+| .+|+..|++.+...|.. +.+.+.+|.+++..|++++|+..+++.++..|++ .
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y-~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDY-EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-H-HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred CCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 45677889999999999998 99999999999998865 6899999999999999999999999999999988 6
Q ss_pred HHhhHHHHHHHhccCc---hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGS---ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+++.+|.++..+.... ....+...+|+..|+..++..|+++.+-.. ..-+..+...+
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A--------------------~~~l~~l~~~l 140 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEA--------------------KKRLAELRNRL 140 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHH--------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHH--------------------HHHHHHHHHHH
Confidence 8888999887664322 223455788999999999999987644211 11111111111
Q ss_pred hchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHH
Q 020060 211 KDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIE 269 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~ 269 (331)
. .--+.+|..|.+.|.+..|+..++.+++..|+.... ..+...+..+|...
T Consensus 141 a--------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 141 A--------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp H--------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred H--------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 1 113557777778888888888888888888876653 44445555555554
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.42 E-value=2e-11 Score=107.74 Aligned_cols=168 Identities=11% Similarity=0.093 Sum_probs=137.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH----hcCCCh-HHHhh
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL----SKGPNK-KILCQ 137 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~~~~-~~~~~ 137 (331)
.....+..|.++...|++ ++|...+++++..+|++..++.. +..+...|++..+.....+++ ...|.. ..+..
T Consensus 42 ~~e~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 42 ERERAHVEALSAWIAGDL-PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 345566789999999997 99999999999999999988776 666666665555555555544 344444 56667
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++...| ++++|...+++++++.|+++.++..+|.++... |++++|+.++++++... |.
T Consensus 120 ~a~~~~~~G--------~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~---------g~~~eA~~~l~~~l~~~--~~ 180 (355)
T cd05804 120 LAFGLEEAG--------QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQ---------GRFKEGIAFMESWRDTW--DC 180 (355)
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHhhhhcc--CC
Confidence 888999887 599999999999999999999999999999999 99999999999999854 43
Q ss_pred Ch----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 218 NP----DLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 218 ~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++ ..+..+|.++...|++++|+..|++++...|.
T Consensus 181 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 181 SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 33 34678999999999999999999999877663
No 88
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.41 E-value=8.2e-11 Score=101.74 Aligned_cols=141 Identities=16% Similarity=0.091 Sum_probs=124.5
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|....+++..+..++..|++++|...++..+...|++ ..+...+.++...+ +.++|.+.+++++.++|..+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~e~~~kal~l~P~~~ 374 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAIERLKKALALDPNSP 374 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcCCCcc
Confidence 7888899999999999999999999999999999998 55666888888665 59999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
..+.++|.+|+.. |++.+|+..+++.+..+ |+++..|..+|..|..+|+-.+|...+...+.+......
T Consensus 375 ~l~~~~a~all~~---------g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~ 443 (484)
T COG4783 375 LLQLNLAQALLKG---------GKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHHHHHHHhc---------CChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence 9999999999988 99999999999999855 999999999999999999999988888888877777554
Q ss_pred H
Q 020060 255 T 255 (331)
Q Consensus 255 ~ 255 (331)
+
T Consensus 444 A 444 (484)
T COG4783 444 A 444 (484)
T ss_pred H
Confidence 4
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.40 E-value=1.6e-11 Score=110.38 Aligned_cols=199 Identities=17% Similarity=0.195 Sum_probs=145.7
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS 144 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 144 (331)
..-..++..+...|-. ..|+..|++ ...|-....||...|+..+|.....+-++.+|+...|..+|.+...
T Consensus 399 q~q~~laell~slGit-ksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGIT-KSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHD 469 (777)
T ss_pred hHHHHHHHHHHHcchH-HHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccC
Confidence 3344455555555553 555555554 3445555555555565555555555555544443444444443321
Q ss_pred h---------------------ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 145 M---------------------AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 145 ~---------------------g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
. |.... ..++|.++.++++..++++|-....|+.+|.+...+ ++++.|.
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql---------ek~q~av 539 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL---------EKEQAAV 539 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH---------hhhHHHH
Confidence 1 00000 225799999999999999999999999999999999 9999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.+|.+++.+. |++.++|+|++..|...|+-.+|...+++|++.+-++... .+...+....|.+++|++.+.+-..+.
T Consensus 540 ~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999999966 9999999999999999999999999999999999777777 888889999999999998888776655
Q ss_pred HH
Q 020060 283 SL 284 (331)
Q Consensus 283 ~~ 284 (331)
..
T Consensus 618 ~~ 619 (777)
T KOG1128|consen 618 KK 619 (777)
T ss_pred hh
Confidence 44
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.40 E-value=1.9e-11 Score=116.54 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=149.2
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQH 162 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~ 162 (331)
-+.++--..-..|+.+...+..+.+..+.|+++.|+..|+++++.+|.+ .....+..++...| +.++|+.+
T Consensus 19 ~~~~~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--------~~~~A~~~ 90 (822)
T PRK14574 19 LLALFISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--------RDQEVIDV 90 (822)
T ss_pred HHHHHHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcC--------CcHHHHHH
Confidence 3444444556789999999999999999999999999999999999998 44447777777666 59999999
Q ss_pred HHHHhcCCCCCchhHHHH--HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 163 AKEAITLDVKDGNSWYNL--GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
+++++ +|.+...+..+ |.++... |++++|++.|+++++.. |+++.++..++.++...++.++|+.
T Consensus 91 ~eka~--~p~n~~~~~llalA~ly~~~---------gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 91 YERYQ--SSMNISSRGLASAARAYRNE---------KRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred HHHhc--cCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 99999 55555455444 7799988 99999999999999955 9999999999999999999999999
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 241 GFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 241 ~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++++...+|.+.....++.++...++..+|++.+.++.+..|.
T Consensus 158 ~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~ 201 (822)
T PRK14574 158 QATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT 201 (822)
T ss_pred HHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC
Confidence 99999999999655555566665667776788888888876553
No 91
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.39 E-value=1.4e-10 Score=100.39 Aligned_cols=155 Identities=15% Similarity=0.078 Sum_probs=137.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+|..+..++..|++ +.|...++..++..|+++..+...+.++...++..+|.+.+++++.++|.. ..+.++|.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~-d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQY-DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred cchHHHHHHHHHHHHhccc-chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 4456788888999999998 999999999999999999999999999999999999999999999999998 78889999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++.+|+..+...+..+|+++..|..|+.+|... |+..+|
T Consensus 383 all~~g--------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~---------g~~~~a------------------ 427 (484)
T COG4783 383 ALLKGG--------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAEL---------GNRAEA------------------ 427 (484)
T ss_pred HHHhcC--------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHh---------CchHHH------------------
Confidence 999887 488999999999999999999999999999987 555444
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
....+..|...|++++|+..+.++.+...-+.
T Consensus 428 -~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 428 -LLARAEGYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 45566777788999999999999998764333
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.38 E-value=2.1e-11 Score=112.88 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
..|...|-++++++|..+.+|..||.+|+...+...|..+|.+|.++++++ .++-..+..+.... +++.|.
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~--------~we~a~ 546 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEES--------TWEEAF 546 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccc--------cHHHHH
Confidence 789999999999999999999999999999999999999999999999999 88888888888664 589999
Q ss_pred HHHHHHhcCCCCC--chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHH
Q 020060 161 QHAKEAITLDVKD--GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERA 238 (331)
Q Consensus 161 ~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 238 (331)
.....+-+..|.. ...|..+|..|... ++..+|+..|+.+++.. |.+...|..+|.+|...|++..|
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea---------~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEA---------HNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCc---------cchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehH
Confidence 9877777766643 45677789988887 99999999999999955 99999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 239 LSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
++.|.++..++|.+... ...+.+...+|++.+++..+.....
T Consensus 616 lKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 616 LKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999887 9999999999999999966655443
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.38 E-value=1.6e-10 Score=104.56 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=155.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-----C
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-----D 114 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-----~ 114 (331)
+.+++|++.|..... .-.+...++-.+|.++..+|++ ++|...|+..|..+|++...+..+..+..... +
T Consensus 18 g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~ll~kLg~~-~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~ 92 (517)
T PF12569_consen 18 GDYEEALEHLEKNEK----QILDKLAVLEKRAELLLKLGRK-EEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDED 92 (517)
T ss_pred CCHHHHHHHHHhhhh----hCCCHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccccc
Confidence 567788888877654 5567777888889999999997 88999999999999999888888888873333 4
Q ss_pred hhHHHHHHHHHHhcCCChHH-------------HhhHHHHHH----HhccC---------ch--hHHHHHHHHHHHHHHH
Q 020060 115 LPAAKNCFNLALSKGPNKKI-------------LCQLSMLER----SMAQG---------SE--NQAEIVEESIQHAKEA 166 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~~~-------------~~~l~~~~~----~~g~~---------~~--~~~~~~~~A~~~~~~a 166 (331)
.+.-...|.+.....|...+ +......|. ..|.+ +. .+..-+.+-+.-+...
T Consensus 93 ~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~ 172 (517)
T PF12569_consen 93 VEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNS 172 (517)
T ss_pred HHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHh
Confidence 56667777777776665410 011111111 11110 00 0111222222233322
Q ss_pred hcCC----------CCCc----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh
Q 020060 167 ITLD----------VKDG----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL 232 (331)
Q Consensus 167 l~~~----------p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 232 (331)
++.. ...| .+++.++..|... |++++|+++.+++|..+ |..++.|...|.++...
T Consensus 173 l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~---------g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 173 LESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL---------GDYEKALEYIDKAIEHT--PTLVELYMTKARILKHA 241 (517)
T ss_pred hcccCCCCCccccccCCchHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHC
Confidence 2211 0112 3457889999888 99999999999999965 99999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 233 ENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 233 g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
|++.+|..+++.|..+|+.+... ...+..+.+.|++++|.+
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~ 283 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEK 283 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999887 888888888888888873
No 94
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.37 E-value=2.5e-12 Score=108.58 Aligned_cols=214 Identities=15% Similarity=0.161 Sum_probs=153.3
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK- 132 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 132 (331)
-..-..+|..+|++|+.+++| .+|+++-.--+.+ .-..+.+--+||..+--.|.|++|+.+..+-+.+...-
T Consensus 51 l~tLSAIYsQLGNAyfyL~DY-~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLg 129 (639)
T KOG1130|consen 51 LSTLSAIYSQLGNAYFYLKDY-EKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELG 129 (639)
T ss_pred HHHHHHHHHHhcchhhhHhhH-HHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHh
Confidence 345567889999999999999 9999876544433 22345566789999999999999999999887665321
Q ss_pred ------HHHhhHHHHHHHhccCc------------hhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhh
Q 020060 133 ------KILCQLSMLERSMAQGS------------ENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSF 188 (331)
Q Consensus 133 ------~~~~~l~~~~~~~g~~~------------~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~ 188 (331)
.+++++|.+|...|... .+....++.|+++|..-+++... .+.++.+||+.|+.+
T Consensus 130 Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlL- 208 (639)
T KOG1130|consen 130 DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLL- 208 (639)
T ss_pred HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeee-
Confidence 78999999999876532 22445678888888877765432 345777888888888
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC----CCCcH--H-HH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALKD----PSLNA--T-EE 257 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~--~-~~ 257 (331)
|+|++|+..-+.-+.+...-.+ ..++.|+|+++..+|+++.|.++|++.+.+. ..... . ..
T Consensus 209 --------Gdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYS 280 (639)
T KOG1130|consen 209 --------GDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYS 280 (639)
T ss_pred --------ccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 8888888877766653222222 2457888888888888888888888876542 22222 2 77
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 258 VQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 258 l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++..+..+.++.+|+.++.+-+.+..
T Consensus 281 LgNtytll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 281 LGNTYTLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888876666555443
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.36 E-value=1.5e-10 Score=102.98 Aligned_cols=167 Identities=15% Similarity=0.133 Sum_probs=153.1
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
+...++..+.-++..++| ...+...+..++..|.+++.+...|..+...|+-++|..+.+.++..++.. .+|.-+|.+
T Consensus 6 KE~~lF~~~lk~yE~kQY-kkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQY-KKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 344566777778889999 999999999999999999999999999999999999999999999999988 788889999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
++.- ++|++|+++|+.|+.++|++..+|..++.+..++ ++++-....-.+.+++. |.....
T Consensus 85 ~R~d--------K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm---------Rd~~~~~~tr~~LLql~--~~~ra~ 145 (700)
T KOG1156|consen 85 QRSD--------KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM---------RDYEGYLETRNQLLQLR--PSQRAS 145 (700)
T ss_pred Hhhh--------hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhh--hhhHHH
Confidence 9844 6799999999999999999999999999999999 99999999999999866 999999
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
|...+..+.-.|++..|....+...+..
T Consensus 146 w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 146 WIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999887777655
No 96
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.34 E-value=2.2e-11 Score=106.56 Aligned_cols=112 Identities=16% Similarity=0.056 Sum_probs=104.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+...|..++..|+| ++|+.+|.+++.++|+++.++..+|.+|...|++++|+..+++++.++|++ .+++.+|.++..+
T Consensus 5 l~~~a~~a~~~~~~-~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 5 LEDKAKEAFVDDDF-ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 55678889999998 999999999999999999999999999999999999999999999999998 8999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
| ++++|+..|+++++++|+++.+...++.+...+
T Consensus 84 g--------~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 84 E--------EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred C--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 7 599999999999999999999988888876554
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=3.3e-10 Score=101.57 Aligned_cols=168 Identities=13% Similarity=-0.004 Sum_probs=81.5
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
+...|.+....|++ +.|..++.++.+..|+.. .+....+.++...|++++|...+++.++..|++ .++..++.++..
T Consensus 121 ~llaA~aa~~~g~~-~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 121 LIKAAEAAQQRGDE-ARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33444555555554 555555555555444442 233334555555555555555555555555555 444445555543
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH----HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC----
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN----LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK---- 216 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---- 216 (331)
.| ++++|.+.+.+..+..+.++..... ...-+... +..+++...+.++... .|
T Consensus 200 ~~--------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~---------~~~~~~~~~L~~~~~~--~p~~~~ 260 (409)
T TIGR00540 200 SG--------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE---------AMADEGIDGLLNWWKN--QPRHRR 260 (409)
T ss_pred Hh--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH---------HHHhcCHHHHHHHHHH--CCHHHh
Confidence 32 3555555555555443222221111 11111111 2223333344444431 13
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+++.++..+|..+...|++++|...++++++..|++..
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~ 298 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA 298 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence 35666666777777777777777777777777776653
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.2e-09 Score=86.97 Aligned_cols=171 Identities=13% Similarity=0.082 Sum_probs=146.4
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+.|+....+-....+....|+.+-|..|+++.....|.. .+....|..+-..| ++++|+++|...++-+|+
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~--------~~~~A~e~y~~lL~ddpt 118 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG--------NYKEAIEYYESLLEDDPT 118 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--------chhhHHHHHHHHhccCcc
Confidence 445555666677777888999999999999998888988 77777788787665 699999999999999999
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+..++-..-.+...+ |+..+|++.+..-++ .-+.|+++|..++.+|...|+|++|.-++++.+-+.|.+
T Consensus 119 ~~v~~KRKlAilka~---------GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n 187 (289)
T KOG3060|consen 119 DTVIRKRKLAILKAQ---------GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN 187 (289)
T ss_pred hhHHHHHHHHHHHHc---------CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence 998888766666666 888899999999998 459999999999999999999999999999999999999
Q ss_pred cHH-HHHHHHHHHHHHH---HHHHHhhhhhhhHHH
Q 020060 253 NAT-EEVQMMVNLLDKI---ENLLKGHAKTKRVAS 283 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~---~~a~~~~~~a~~l~~ 283 (331)
+.. ..++.++.-+|.. .-+.+.|.++.++.+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 987 8888888776654 455699999998877
No 99
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.31 E-value=1e-11 Score=104.95 Aligned_cols=205 Identities=14% Similarity=0.095 Sum_probs=152.1
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCC--------------------hh
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGD--------------------LP 116 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~--------------------~~ 116 (331)
.+...-++|+.+..+|.| ++|+-+..+-+.+... ...+++++|.+|...|+ ++
T Consensus 94 EAKssgNLGNtlKv~G~f-deA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~ 172 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAF-DEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE 172 (639)
T ss_pred cccccccccchhhhhccc-chHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence 345566899999999999 9999998888776432 36799999999988765 34
Q ss_pred HHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHH
Q 020060 117 AAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNA 183 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~ 183 (331)
.|+++|..-+++.... .++-++|..|+.+| +|++|+..-+.-+.+.... ..++.++|++
T Consensus 173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLG--------df~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLG--------DFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeec--------cHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 5666666666654332 45556666776665 5999988887776654332 3578899999
Q ss_pred HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC----ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH-----
Q 020060 184 CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS----NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA----- 254 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----- 254 (331)
+..+ |+++.|+++|.+.+.+...-. .+...+.+|+.|.-..++..|+.|+.+-+.+.....+
T Consensus 245 hifl---------g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 245 HIFL---------GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred hhhh---------cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999 999999999999886332222 3455899999999999999999999998887544332
Q ss_pred -H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 255 -T-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 255 -~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
+ +.++..+..+|...+|+....+.+++...+
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 2 777777777788887777666666554443
No 100
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.31 E-value=4.9e-10 Score=92.52 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=92.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD---AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KI 134 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~ 134 (331)
..+..++..|..+...|+| ++|+..|++++...|..+. +.+.+|.+|+..+++++|+..+++.++..|++ .+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y-~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNW-KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4566788899999999998 9999999999999998755 45899999999999999999999999999988 67
Q ss_pred HhhHHHHHHHhccC----------chhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 135 LCQLSMLERSMAQG----------SENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 135 ~~~l~~~~~~~g~~----------~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
++.+|.+...++.. .........+|+..+++.++..|++.
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 88888886555421 00112336789999999999999874
No 101
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.30 E-value=6.1e-11 Score=103.80 Aligned_cols=113 Identities=14% Similarity=0.104 Sum_probs=100.9
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
...|...+..| ++++|+..|.++++.+|+++.+|.++|.++... |++++|+..+++++.+.
T Consensus 6 ~~~a~~a~~~~--------~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~---------g~~~eAl~~~~~Al~l~-- 66 (356)
T PLN03088 6 EDKAKEAFVDD--------DFALAVDLYTQAIDLDPNNAELYADRAQANIKL---------GNFTEAVADANKAIELD-- 66 (356)
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--
Confidence 34455555444 699999999999999999999999999999999 99999999999999965
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
|.++.+++.+|.++..+|++++|+.+|++++.++|++... ..++.+...+..
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 777777666643
No 102
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.30 E-value=1.4e-09 Score=98.57 Aligned_cols=131 Identities=13% Similarity=-0.013 Sum_probs=111.3
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+++.+++.+..+| ++++|+++..++++..|+.++.+...|.++... |++.+|...++.+-.++
T Consensus 196 ~~~~lAqhyd~~g--------~~~~Al~~Id~aI~htPt~~ely~~KarilKh~---------G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 196 TLYFLAQHYDYLG--------DYEKALEYIDKAIEHTPTLVELYMTKARILKHA---------GDLKEAAEAMDEARELD 258 (517)
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHhCC
Confidence 4566899898887 499999999999999999999999999999999 99999999999999965
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC--CCc-------HH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP--SLN-------AT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~-------~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.|.-+....+..+.+.|+.++|...+..-.+.+. ... .. ...|.++.+.|++..|++.|....+.-.
T Consensus 259 --~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 259 --LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred --hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999888766552 111 11 5677889999999999998887776543
No 103
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.29 E-value=1.2e-11 Score=81.40 Aligned_cols=67 Identities=33% Similarity=0.424 Sum_probs=64.4
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCC
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGP 130 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~ 130 (331)
.+..|..+|.++...|+| ++|+.+|.++++++|+++.+++++|.+|...| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~-~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDY-EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHH-HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 467899999999999998 99999999999999999999999999999999 79999999999999988
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1e-10 Score=105.93 Aligned_cols=139 Identities=24% Similarity=0.325 Sum_probs=124.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...|...+..+...+. .++|..++.++-.++|..+..|+..|.++...|++.+|...|..++.++|++ .....+|.++
T Consensus 650 ~~lwllaa~~~~~~~~-~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGN-DDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456677777777787 4999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
...|. ....+....+..+++++|.++++|+.+|.++... |+.++|.++|+.++.+. +.+|.
T Consensus 729 le~G~------~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~---------Gd~~~Aaecf~aa~qLe--~S~PV 789 (799)
T KOG4162|consen 729 LELGS------PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL---------GDSKQAAECFQAALQLE--ESNPV 789 (799)
T ss_pred HHhCC------cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------cchHHHHHHHHHHHhhc--cCCCc
Confidence 99985 3455566699999999999999999999999999 99999999999999855 66653
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.27 E-value=1.4e-10 Score=109.87 Aligned_cols=202 Identities=10% Similarity=-0.028 Sum_probs=135.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---------
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--------- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------- 129 (331)
..+....++..+...+...+++ ++|+..+..+++..|+...+++.+|.++.+.+++..+... +++...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~-deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLT-DEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 3455666677777777777776 7777777777777777777777777777777666555444 333332
Q ss_pred ----------CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 130 ----------PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 130 ----------~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
+++ .+++.+|.||..+| +.++|...|+++++.+|+++.+.+++|..|... +
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g--------~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~----------d 164 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLN--------ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE----------D 164 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----------h
Confidence 222 46667777777766 377777777777777777777777777776642 5
Q ss_pred HHHHHHHHHHHHhch------------------hcCCChhH--------HhhHH------------HHHHHhhcHHHHHH
Q 020060 199 LLQSLKAYQNAEKDE------------------RMKSNPDL--------YFNCA------------TVNKYLENYERALS 240 (331)
Q Consensus 199 ~~~A~~~~~~al~~~------------------~~~~~~~~--------~~~la------------~~~~~~g~~~~A~~ 240 (331)
+++|+.++.+|+... ..|.+.+. .-.++ ..|...+++++++.
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 666666666665411 11333322 12223 67788899999999
Q ss_pred HHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 241 GFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 241 ~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+++.++..+|++..+ ..+..++. +++.. ...+.+.+++-.+
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l 286 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDI 286 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhcc
Confidence 999999999999887 88888876 44433 5555555555433
No 106
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.25 E-value=2.3e-10 Score=97.17 Aligned_cols=209 Identities=13% Similarity=0.190 Sum_probs=146.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 132 (331)
...+..+...|..|...++| ++|..+|.++....-. -+.++...|.+|... ++++|+.+|++++.+....
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~-~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDW-EKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc
Confidence 35567777889999999998 9999999999775321 245677777777665 9999999999999875332
Q ss_pred -----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 133 -----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 133 -----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
..+..+|.++... .+++++|+++|++|++..... ...+..+|.++... |+|++
T Consensus 110 ~~~aA~~~~~lA~~ye~~-------~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l---------~~y~~ 173 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQ-------LGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL---------GRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHHHCCT-------T--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---------T-HHH
T ss_pred HHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh---------CCHHH
Confidence 4556677776655 136999999999999864322 34567889999988 99999
Q ss_pred HHHHHHHHHhchhc-CC-Ch---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHH-----HHHH
Q 020060 202 SLKAYQNAEKDERM-KS-NP---DLYFNCATVNKYLENYERALSGFEASALKDPSLNAT---EEVQMMVNL-----LDKI 268 (331)
Q Consensus 202 A~~~~~~al~~~~~-~~-~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~~~-----l~~~ 268 (331)
|+..|++....... +. .. ..++..+.|+...||+..|...+++....+|..... .-+..++.. ...+
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f 253 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAF 253 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCH
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHH
Confidence 99999999873211 11 11 336788889999999999999999999999976553 222222222 2345
Q ss_pred HHHHHhhhhhhhHHHHHhh
Q 020060 269 ENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~~~ 287 (331)
..++..|....+|++....
T Consensus 254 ~~av~~~d~~~~ld~w~~~ 272 (282)
T PF14938_consen 254 TEAVAEYDSISRLDNWKTK 272 (282)
T ss_dssp HHHCHHHTTSS---HHHHH
T ss_pred HHHHHHHcccCccHHHHHH
Confidence 6677788888887776544
No 107
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=2.7e-09 Score=90.17 Aligned_cols=81 Identities=16% Similarity=0.086 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~ 276 (331)
++...=+...++.++ ..|++|..+..+|..+.+.+.+.+|..+|+.+++..|+......++.++..+|+..+|...+.
T Consensus 308 ~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 308 GDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred CCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 444444444455555 458899999999999999999999999999999999998888999999999999999999998
Q ss_pred hhh
Q 020060 277 KTK 279 (331)
Q Consensus 277 ~a~ 279 (331)
+++
T Consensus 386 e~L 388 (400)
T COG3071 386 EAL 388 (400)
T ss_pred HHH
Confidence 888
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.23 E-value=1.3e-09 Score=98.38 Aligned_cols=169 Identities=11% Similarity=0.091 Sum_probs=136.1
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
|........+|..+...|-...|+..|++. ..|.....+|..+|+ ..+|..+..+-++ .|+++.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl-------emw~~vi~CY~~lg~--------~~kaeei~~q~le-k~~d~~ 458 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL-------EMWDPVILCYLLLGQ--------HGKAEEINRQELE-KDPDPR 458 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH-------HHHHHHHHHHHHhcc--------cchHHHHHHHHhc-CCCcch
Confidence 455667788999999999999999999986 456666777777763 7788888888887 566677
Q ss_pred hHHHHHHHHHhhhhhc-----------C--------CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 176 SWYNLGNACLTSFFVT-----------G--------SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~-----------~--------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
.|..+|.+....-+-. + -..+++|+++..+++.+++.+ |.....|+.+|.+..+.+++.
T Consensus 459 lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 459 LYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhH
Confidence 7776665543210000 0 002389999999999999966 999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 237 RALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.|..+|..+..++|++..+ .+++.++..+++-.+|...+.+|.+-+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 9999999999999999999 999999999999999988777777544
No 109
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.23 E-value=5.4e-11 Score=78.30 Aligned_cols=67 Identities=25% Similarity=0.543 Sum_probs=63.6
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh-cHHHHHHHHHHHHhcCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE-NYERALSGFEASALKDP 250 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~ 250 (331)
++..|..+|.++... |++++|+.+|.++++.+ |+++.+++++|.++..+| ++.+|+.+|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~---------~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQ---------GDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHT---------THHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 577899999999999 99999999999999965 999999999999999999 89999999999999998
No 110
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.22 E-value=9.6e-10 Score=100.22 Aligned_cols=149 Identities=13% Similarity=0.053 Sum_probs=116.2
Q ss_pred CCCcHHHH--HHHHHHHHHhCC---hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 95 NPSLADAW--LCLGSCIWKKGD---LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 95 ~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
.|.+..+| +..|.-|...++ +..|+.+|+++++++|++ .++..++.++............+...+.....+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34555544 556666665544 778999999999999998 677777776654322111122346777777778766
Q ss_pred C--CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 169 L--DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 169 ~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
+ +|..+.++..+|..+... |++++|...+++++.++ | +..+|..+|.++...|++++|...|++|+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~---------g~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVK---------GKTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cccCcCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 777788899999988877 99999999999999976 7 57899999999999999999999999999
Q ss_pred hcCCCCcHH
Q 020060 247 LKDPSLNAT 255 (331)
Q Consensus 247 ~~~~~~~~~ 255 (331)
.++|.++..
T Consensus 481 ~L~P~~pt~ 489 (517)
T PRK10153 481 NLRPGENTL 489 (517)
T ss_pred hcCCCCchH
Confidence 999998864
No 111
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.22 E-value=4.9e-10 Score=94.78 Aligned_cols=168 Identities=15% Similarity=0.072 Sum_probs=129.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhH--HHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQL--SML 141 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l--~~~ 141 (331)
..+....|.++...|++ ++|+..+.+. .+.++......++...++++.|.+.++..-+.+.+. .+..+ +++
T Consensus 102 ~~~~~~~A~i~~~~~~~-~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~-~l~qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDY-EEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDS-ILTQLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHH-HHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHH
Confidence 34556677888888997 8888877654 567788888899999999999999999987776654 34444 444
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
....|. +.+.+|..+|++..+..+.++..++.++.+++.+ |+|++|...+.+++..+ |.++++
T Consensus 175 ~l~~g~------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~---------~~~~eAe~~L~~al~~~--~~~~d~ 237 (290)
T PF04733_consen 175 NLATGG------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL---------GHYEEAEELLEEALEKD--PNDPDT 237 (290)
T ss_dssp HHHHTT------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC---------T-HHHHHHHHHHHCCC---CCHHHH
T ss_pred HHHhCc------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhc--cCCHHH
Confidence 444442 3588999999998888888888999999999988 99999999999998855 999999
Q ss_pred HhhHHHHHHHhhcH-HHHHHHHHHHHhcCCCCcHH
Q 020060 222 YFNCATVNKYLENY-ERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 222 ~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~ 255 (331)
+.|++.+...+|+. +.+.+++.+....+|+++..
T Consensus 238 LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 238 LANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 99999999999988 66777888888889998754
No 112
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.20 E-value=3.3e-09 Score=82.54 Aligned_cols=108 Identities=17% Similarity=0.181 Sum_probs=100.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+..++..++.+|..|-+.|-+ .-|...|.+++.+.|+.+.++..+|..+...|+|+.|.+.|...++++|.. -++.+
T Consensus 60 ~~eeRA~l~fERGvlYDSlGL~-~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN 138 (297)
T COG4785 60 TDEERAQLLFERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN 138 (297)
T ss_pred ChHHHHHHHHHhcchhhhhhHH-HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc
Confidence 6678999999999999999997 999999999999999999999999999999999999999999999999998 78888
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
.|..+...| ++.-|.+.+.+-.+.+|++|.
T Consensus 139 Rgi~~YY~g--------R~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 139 RGIALYYGG--------RYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred cceeeeecC--------chHhhHHHHHHHHhcCCCChH
Confidence 888877665 699999999999999999874
No 113
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.7e-10 Score=92.07 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
+.-+.-++..+..+|++++.|..||.+|+..|+++.|...|.+++++.|++ ..+..+|.++..... .....++.
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~-----~~~ta~a~ 213 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG-----QQMTAKAR 213 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----CcccHHHH
Confidence 456677888888999999999999999999999999999999999999999 888889999887652 24577899
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
..+++++..+|.+..+.+.||..++.. |+|.+|+..++..++..
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~---------g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQ---------GDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999 99999999999999853
No 114
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.19 E-value=4.8e-09 Score=103.03 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=86.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh----cCCChHHHhh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS----KGPNKKILCQ 137 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~~~~~~ 137 (331)
...|..+-..|...|++ ++|+..|.+.... .|+ ...|..+...|.+.|++++|...|.+... +.|+...+..
T Consensus 507 vvTynaLI~gy~k~G~~-eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTyna 584 (1060)
T PLN03218 507 VHTFGALIDGCARAGQV-AKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584 (1060)
T ss_pred HHHHHHHHHHHHHCcCH-HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHH
Confidence 34555555566666665 6666666665443 232 45566666666666666666666666643 2344444555
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLD-VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
+...+.+.| ++++|.+.|+...+.+ +.+...|..+...|... |++++|+..|.+.......|
T Consensus 585 LI~ay~k~G--------~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~---------G~~deAl~lf~eM~~~Gv~P 647 (1060)
T PLN03218 585 LMKACANAG--------QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK---------GDWDFALSIYDDMKKKGVKP 647 (1060)
T ss_pred HHHHHHHCC--------CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCC
Confidence 555555444 3566666666655543 23444555555555555 55555555555554432122
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+...|..+...+...|++++|...|....+
T Consensus 648 -D~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 648 -DEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 223344444444444444444444444444
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.18 E-value=3.3e-09 Score=100.70 Aligned_cols=143 Identities=15% Similarity=0.069 Sum_probs=125.4
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh----------HHHHHHHHHH
Q 020060 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN----------QAEIVEESIQ 161 (331)
Q Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~----------~~~~~~~A~~ 161 (331)
..+|.+..+|..|...+...+++++|+..++.+++..|+. .+++.+|.++...+..... ...++ .+++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve 103 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVE 103 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHH
Confidence 3478999999999999999999999999999999999999 8888899988877653221 22234 7778
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHH
Q 020060 162 HAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 162 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 241 (331)
++...+...+.+..+++.+|.||-.+ |+.++|...|+++++.+ |.|+.+..++|..|... +.++|..+
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~---------g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKL---------NENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHc---------CChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 88777777899999999999999999 99999999999999966 99999999999999999 99999999
Q ss_pred HHHHHhc
Q 020060 242 FEASALK 248 (331)
Q Consensus 242 ~~~al~~ 248 (331)
+.+|+..
T Consensus 172 ~~KAV~~ 178 (906)
T PRK14720 172 LKKAIYR 178 (906)
T ss_pred HHHHHHH
Confidence 9999853
No 116
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.18 E-value=5.2e-10 Score=82.10 Aligned_cols=105 Identities=18% Similarity=0.205 Sum_probs=94.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~ 136 (331)
+..++.+|..+...|++ ++|+..|.+++..+|++ +.+++.+|.++...|++++|+.+|++++...|++ .++.
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDY-ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred cHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 35688999999999998 99999999999998876 5789999999999999999999999999998875 5788
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
.+|.++..+| ++++|+.++.++++..|++..+.
T Consensus 81 ~~~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 81 KLGMSLQELG--------DKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHhC--------ChHHHHHHHHHHHHHCcCChhHH
Confidence 9999999876 59999999999999999886554
No 117
>PRK11906 transcriptional regulator; Provisional
Probab=99.17 E-value=2.1e-09 Score=93.57 Aligned_cols=164 Identities=16% Similarity=0.100 Sum_probs=130.1
Q ss_pred HHHHHHHHHhCC---hhHHHHHHHHHH---hcCCCh-HHHhhHHHHHHHhcc-CchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 103 LCLGSCIWKKGD---LPAAKNCFNLAL---SKGPNK-KILCQLSMLERSMAQ-GSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 103 ~~lg~~~~~~g~---~~~A~~~~~~al---~~~~~~-~~~~~l~~~~~~~g~-~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
+..|..+...+. .+.|+.+|.+++ .++|.. .++..++.+++..-. ...+......+|....++|++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 666666655443 467888888998 888888 778888888775511 011134568899999999999999999
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.++..+|.+.... ++++.|...|++++.++ |+.+.+|+..|.+....|+.++|...++++++++|.-..
T Consensus 339 ~a~~~~g~~~~~~---------~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 339 KILAIMGLITGLS---------GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHHHHHHhh---------cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999888 89999999999999976 999999999999999999999999999999999998766
Q ss_pred H--HHHHHHHHHHHHHHHHHHhhhh
Q 020060 255 T--EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 255 ~--~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
+ ..+..-.......+++++.|-+
T Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 408 AVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHcCCchhhhHHHHhh
Confidence 5 3333213444556667765544
No 118
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.15 E-value=7.2e-10 Score=87.08 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+.+++.+|.++...|++++|+.+|+++++..|+. ..+..+|.++..+| ++++|+..+++++...|.+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~ 105 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDKALEYYHQALELNPKQ 105 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCccc
Confidence 34556666666666666666666666666655432 45566666666555 3666666666666666666
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+..+..+|.++... |+...+...++.++ ..+.+|..++++++..+|++
T Consensus 106 ~~~~~~lg~~~~~~---------g~~~~a~~~~~~A~----------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 106 PSALNNIAVIYHKR---------GEKAEEAGDQDEAE----------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHHc---------CChHhHhhCHHHHH----------------------HHHHHHHHHHHHHHhhCchh
Confidence 66666666666655 55554444444333 23556666666666666665
No 119
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.15 E-value=1.5e-09 Score=75.60 Aligned_cols=99 Identities=26% Similarity=0.408 Sum_probs=88.1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+++.+|.++...| ++++|+..++++++..|.++.++..+|.++... +++++|+..+++++...
T Consensus 2 ~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~ 64 (100)
T cd00189 2 ALLNLGNLYYKLG--------DYDEALEYYEKALELDPDNADAYYNLAAAYYKL---------GKYEEALEDYEKALELD 64 (100)
T ss_pred HHHHHHHHHHHHh--------cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhCC
Confidence 4677888888665 599999999999999999989999999999988 99999999999999855
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|.++..+..+|.++...|++++|..++.+++...|+
T Consensus 65 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 65 --PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred --CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 888889999999999999999999999999988774
No 120
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.14 E-value=1.2e-09 Score=85.42 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHH
Q 020060 82 KDAEDHLSKAVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..+...+.+.++..+.. ..+++.+|.++...|++++|+..|++++.+.|+. .++.++|.++...| +
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--------~ 87 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--------E 87 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------C
Confidence 44444454444444433 5566777777777777777777777777665543 36677777777665 3
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+++|+.++++++.++|..+..+.++|.++...
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777644
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.14 E-value=2e-09 Score=84.54 Aligned_cols=113 Identities=19% Similarity=0.263 Sum_probs=95.3
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
....+..++.+|..+...|++ ++|+.+|+++++..|+. +.++..+|.++...|++++|+.++.+++...|.+ ..+
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEY-AEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 346677899999999999998 99999999999887653 5789999999999999999999999999999988 788
Q ss_pred hhHHHHHHHhccCch------hHHHHHHHHHHHHHHHhcCCCCC
Q 020060 136 CQLSMLERSMAQGSE------NQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~------~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
..+|.++..+|.... .....+++|++++++++..+|++
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 889999988875322 13344778888888888888765
No 122
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.14 E-value=1.6e-08 Score=99.43 Aligned_cols=195 Identities=12% Similarity=0.051 Sum_probs=121.3
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCChHHHhhHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--GPNKKILCQLSMLE 142 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~ 142 (331)
.+..+-..|...|++ ++|.+.|++..+.. +.+...|..+...|.+.|++++|...|.+..+. .|+...+..+...+
T Consensus 581 TynaLI~ay~k~G~l-deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 581 TVGALMKACANAGQV-DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444455556666664 66666666666554 334556666666666666666666666666554 34445555555566
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLD-VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
...| ++++|.+++.+..+.. +.+..+|..+...|... |++++|...|++...... ..+...
T Consensus 660 ~k~G--------~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~---------G~~eeA~~lf~eM~~~g~-~Pdvvt 721 (1060)
T PLN03218 660 GHAG--------DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA---------KNWKKALELYEDIKSIKL-RPTVST 721 (1060)
T ss_pred HhCC--------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHcCC-CCCHHH
Confidence 5554 4777777777776643 23456677777777777 777788777777654321 234556
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 222 YFNCATVNKYLENYERALSGFEASALK--DPSLNATEEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
|..+...|.+.|++++|...|++.... .|+......+-..+...|++++|.+.+.+..
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777778888888888888776543 4444333444566666777777765555543
No 123
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.14 E-value=2.4e-10 Score=74.16 Aligned_cols=64 Identities=25% Similarity=0.490 Sum_probs=59.7
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.+|..+...|+| ++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~-~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDY-DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHH-HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999998 999999999999999999999999999999999999999999999999975
No 124
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=1.2e-09 Score=76.16 Aligned_cols=98 Identities=24% Similarity=0.359 Sum_probs=90.5
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
+++.+|..+...|++ ++|+..+.++++..|.+..++..+|.++...|++++|+.+|++++...|.+ ..+..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDY-DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH
Confidence 577899999999998 999999999999999999999999999999999999999999999999988 788899999997
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
.| ++++|...+.++++..|.
T Consensus 81 ~~--------~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LG--------KYEEALEAYEKALELDPN 100 (100)
T ss_pred HH--------hHHHHHHHHHHHHccCCC
Confidence 75 699999999999988773
No 125
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=8.1e-09 Score=84.92 Aligned_cols=125 Identities=11% Similarity=0.030 Sum_probs=111.7
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
.+.-+.-++..+..+|++ ..|..||.+|+.+| ++..|...|.+++++.|++++.+..+|.++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--------~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a----- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALG--------RASDALLAYRNALRLAGDNPEILLGLAEALYYQA----- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------chhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-----
Confidence 556677788889999999 99999999999886 5999999999999999999999999999988661
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+.....++...++++++.+ |.+..+.+.+|..++..|+|.+|...++..+...|.+...
T Consensus 205 -~~~~ta~a~~ll~~al~~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 205 -GQQMTAKARALLRQALALD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred -CCcccHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 2356688999999999965 9999999999999999999999999999999998876654
No 126
>PRK11906 transcriptional regulator; Provisional
Probab=99.09 E-value=5.6e-09 Score=90.98 Aligned_cols=163 Identities=10% Similarity=-0.005 Sum_probs=134.6
Q ss_pred HHHHhhhhhhccccc--HHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHh---------CChhHHHHHHHHHHhcCCC
Q 020060 66 YEYLKGKILDVVPEY--RKDAEDHLSKAV---KLNPSLADAWLCLGSCIWKK---------GDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~--~~~A~~~~~~al---~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~ 131 (331)
-++.+|......+.- ...|+.+|.+++ .++|+.+.++..++.||+.. .+..+|...-+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 446777776554421 367999999999 99999999999999999865 2356789999999999999
Q ss_pred h-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 132 K-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 132 ~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+ .++..+|.+....| +++.|...|++|+.++|+.+.+|+..|.+.... |+.++|++.+++++
T Consensus 337 Da~a~~~~g~~~~~~~--------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~---------G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSG--------QAKVSHILFEQAKIHSTDIASLYYYRALVHFHN---------EKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhc--------chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHh
Confidence 9 89999999988776 499999999999999999999999999999988 99999999999999
Q ss_pred hchhcCCChhHHhhHHHH-HHHhhcHHHHHHHHHHHHh
Q 020060 211 KDERMKSNPDLYFNCATV-NKYLENYERALSGFEASAL 247 (331)
Q Consensus 211 ~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 247 (331)
+++ |....+-...-.+ .+.....++|++.|-+-.+
T Consensus 400 rLs--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 400 QLE--PRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred ccC--chhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 966 8876664443344 4555678888888866443
No 127
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.09 E-value=3.2e-09 Score=83.09 Aligned_cols=122 Identities=16% Similarity=0.149 Sum_probs=97.8
Q ss_pred CChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHh
Q 020060 113 GDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLT 186 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~ 186 (331)
+++..+...+...++..+.. ..++.+|.++...| ++++|+..|++++.+.|+. +.+|.++|.++..
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g--------~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEG--------EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS 84 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH
Confidence 34666666676665555554 67788999999776 4999999999999887663 4589999999999
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH-------HhhcHH-------HHHHHHHHHHhcCCCC
Q 020060 187 SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK-------YLENYE-------RALSGFEASALKDPSL 252 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~~~~ 252 (331)
. |++++|+..+++++... |.....+.++|.++. .+|+++ +|..+|++++..+|.+
T Consensus 85 ~---------g~~~eA~~~~~~Al~~~--~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 85 N---------GEHTKALEYYFQALERN--PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred c---------CCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 9 99999999999999955 999999999999998 677766 5566666777778765
Q ss_pred c
Q 020060 253 N 253 (331)
Q Consensus 253 ~ 253 (331)
.
T Consensus 154 ~ 154 (168)
T CHL00033 154 Y 154 (168)
T ss_pred H
Confidence 4
No 128
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.09 E-value=2.9e-09 Score=102.19 Aligned_cols=185 Identities=11% Similarity=0.021 Sum_probs=117.1
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCChHHHhhHHHHHHHhc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--GPNKKILCQLSMLERSMA 146 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g 146 (331)
.+...|...|++ ++|...|++..+ .+..+|..+...|...|+.++|+..|++..+. .|+...+..+...+...|
T Consensus 365 ~Li~~y~k~G~~-~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 440 (697)
T PLN03081 365 ALVDLYSKWGRM-EDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440 (697)
T ss_pred HHHHHHHHCCCH-HHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCC
Confidence 333444444453 555555544322 13345566666666666666666666665443 344444444555555444
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
.+++|.++|+...+..+- +...|..+..+|... |++++|.+.+++.- ...+...|..
T Consensus 441 --------~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~---------G~~~eA~~~~~~~~----~~p~~~~~~~ 499 (697)
T PLN03081 441 --------LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE---------GLLDEAYAMIRRAP----FKPTVNMWAA 499 (697)
T ss_pred --------cHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc---------CCHHHHHHHHHHCC----CCCCHHHHHH
Confidence 477777777776643222 234566667777766 88888887776542 1234456888
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
+...+...|+++.|...+++.+.+.|++... ..+..++...|++++|.+.+.+-
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888899999999999999999987766 77888899999998888665543
No 129
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.09 E-value=3.1e-09 Score=77.94 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC-
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD- 173 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~- 173 (331)
++.++.+|..+...|++++|+..|.+++...|++ .+++.+|.++...| ++++|+..+++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHCCCCC
Confidence 4678999999999999999999999999999875 57888999999776 5999999999999998875
Q ss_pred --chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 174 --GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 174 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+.++..+|.++... |++++|+..+++++... |+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~--p~~~~~ 112 (119)
T TIGR02795 74 KAPDALLKLGMSLQEL---------GDKEKAKATLQQVIKRY--PGSSAA 112 (119)
T ss_pred cccHHHHHHHHHHHHh---------CChHHHHHHHHHHHHHC--cCChhH
Confidence 57899999999998 99999999999999854 877654
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.08 E-value=3.2e-08 Score=81.80 Aligned_cols=167 Identities=11% Similarity=0.010 Sum_probs=132.2
Q ss_pred CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 97 SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
..+..++..|..+...|++++|+..|++++...|.. .+.+.+|.+++..+ ++++|+..+++.++..|+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--------~y~~A~~~~e~fi~~~P~ 101 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLNPT 101 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCcC
Confidence 467788999999999999999999999999999987 55688999999886 599999999999999988
Q ss_pred Cc---hhHHHHHHHHHhhh---------hhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----------------Hh
Q 020060 173 DG---NSWYNLGNACLTSF---------FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----------------YF 223 (331)
Q Consensus 173 ~~---~~~~~l~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~ 223 (331)
++ .+++.+|.++.... ......++....+|+..|++.++ .-|++.-+ -+
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S~ya~~A~~rl~~l~~~la~~e~ 179 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNSQYTTDATKRLVFLKDRLAKYEL 179 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence 75 46788888754331 01122244556789999999998 44776422 35
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHH
Q 020060 224 NCATVNKYLENYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 224 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~~a~~ 273 (331)
..|..|.+.|.|..|+.-++.+++..|+.+.. ..+..++..+|..++|.+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 77888999999999999999999999987763 555666777777766653
No 131
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.07 E-value=8.7e-09 Score=78.48 Aligned_cols=124 Identities=22% Similarity=0.190 Sum_probs=103.2
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSM 140 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~ 140 (331)
+.........++. ..+...+.+.+.-+|+. ..+.+.+|.+++..|++++|...|++++...|+. .+...++.
T Consensus 15 y~~~~~~~~~~~~-~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQALQAGDP-AKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 3333344457885 88888899999999988 5678889999999999999999999999988665 56778999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
++...| ++++|+..++. +...+-.+.++..+|.++... |++++|+..|++++
T Consensus 94 ~~~~~~--------~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~---------g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQG--------QYDEALATLQQ-IPDEAFKALAAELLGDIYLAQ---------GDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcC--------CHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHC---------CCHHHHHHHHHHhC
Confidence 999876 59999999966 444555677888999999999 99999999999875
No 132
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.9e-08 Score=89.04 Aligned_cols=188 Identities=14% Similarity=0.123 Sum_probs=111.9
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHH
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQA 153 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~ 153 (331)
+...++| ++|.....+.+...|++..+.+..-.+..+.++|++|+...++-......+...+..+.|.++++
T Consensus 22 ~~~~~e~-e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrln------- 93 (652)
T KOG2376|consen 22 HGKNGEY-EEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLN------- 93 (652)
T ss_pred hccchHH-HHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcc-------
Confidence 3445555 66666666666666666666666666666666666665333322221222222345555555553
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch--------------------
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-------------------- 213 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------------------- 213 (331)
..++|+..+. -.++.+..+....|.+++.+ |+|++|+..|+..++.+
T Consensus 94 -k~Dealk~~~---~~~~~~~~ll~L~AQvlYrl---------~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 94 -KLDEALKTLK---GLDRLDDKLLELRAQVLYRL---------ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred -cHHHHHHHHh---cccccchHHHHHHHHHHHHH---------hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 3556666555 23333444555555555555 66666666666554311
Q ss_pred --------hcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc--------CCC--------CcHHHHHHHHHHHHHHH
Q 020060 214 --------RMK-SNPDLYFNCATVNKYLENYERALSGFEASALK--------DPS--------LNATEEVQMMVNLLDKI 268 (331)
Q Consensus 214 --------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~~~--------~~~~~~l~~~~~~l~~~ 268 (331)
..| ++-+.+||.|.++...|+|.+|++.+++++.+ +.+ +.....++.++..+|+.
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 112 24466899999999999999999999999543 111 01127788889999999
Q ss_pred HHHHHhhhhhhhHH
Q 020060 269 ENLLKGHAKTKRVA 282 (331)
Q Consensus 269 ~~a~~~~~~a~~l~ 282 (331)
.+|...|....+..
T Consensus 241 ~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhc
Confidence 99998777666543
No 133
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.04 E-value=2.2e-08 Score=96.23 Aligned_cols=209 Identities=9% Similarity=-0.019 Sum_probs=153.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
..+++|.++++.++. .....|..+...|...|++ ++|+..|.+..... .-+..++..+...+...|++++|
T Consensus 273 g~~~~A~~vf~~m~~-------~~~vt~n~li~~y~~~g~~-~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 273 GDIEDARCVFDGMPE-------KTTVAWNSMLAGYALHGYS-EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred CCHHHHHHHHHhCCC-------CChhHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 456788888887763 2456788888889999997 99999998886642 22456788888888889999999
Q ss_pred HHHHHHHHhcCC--ChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 119 KNCFNLALSKGP--NKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 119 ~~~~~~al~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
...+...++... +...+..+...|.+.| ++++|.+.|++..+ .+..+|+.+...|...
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G--------~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~--------- 404 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWG--------RMEDARNVFDRMPR---KNLISWNALIAGYGNH--------- 404 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCC--------CHHHHHHHHHhCCC---CCeeeHHHHHHHHHHc---------
Confidence 998888887652 2266677888888766 48899999887654 3567888888888888
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK---DPSLNATEEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~l~~~~~~l~~~~~a~~ 273 (331)
|+.++|+..|++..+....| +...+..+...+...|..++|..+|+...+. .|+......+...+.+.|++++|.+
T Consensus 405 G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 88999999998887643223 3445677777788888888888888887653 3433333566677777777777765
Q ss_pred hhhh
Q 020060 274 GHAK 277 (331)
Q Consensus 274 ~~~~ 277 (331)
.+.+
T Consensus 484 ~~~~ 487 (697)
T PLN03081 484 MIRR 487 (697)
T ss_pred HHHH
Confidence 5443
No 134
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.04 E-value=8.2e-09 Score=94.18 Aligned_cols=139 Identities=16% Similarity=0.070 Sum_probs=111.1
Q ss_pred hhhHHHHHhhhhhhccc---ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--------ChhHHHHHHHHHHhc--
Q 020060 62 QRATYEYLKGKILDVVP---EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG--------DLPAAKNCFNLALSK-- 128 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~-- 128 (331)
..+.-++..|..+...+ ++ ..|+.+|+++++++|+++.++-.++.+|.... +...+.....+++.+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~-~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~ 415 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSL-NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE 415 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence 34555777887776544 35 78999999999999999999999999886642 234566666676664
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
+|.. .++..+|......| ++++|...+++|+.++| +..+|..+|.++... |++++|++.|+
T Consensus 416 ~~~~~~~~~ala~~~~~~g--------~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~---------G~~~eA~~~~~ 477 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKG--------KTDEAYQAINKAIDLEM-SWLNYVLLGKVYELK---------GDNRLAADAYS 477 (517)
T ss_pred CcCChHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHc---------CCHHHHHHHHH
Confidence 4444 56666777766555 69999999999999999 578999999999998 99999999999
Q ss_pred HHHhchhcCCChhH
Q 020060 208 NAEKDERMKSNPDL 221 (331)
Q Consensus 208 ~al~~~~~~~~~~~ 221 (331)
+|+.++ |.++..
T Consensus 478 ~A~~L~--P~~pt~ 489 (517)
T PRK10153 478 TAFNLR--PGENTL 489 (517)
T ss_pred HHHhcC--CCCchH
Confidence 999966 998865
No 135
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.04 E-value=1.1e-09 Score=70.94 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+.+|..+... |++++|+..|+++++.. |.++.+++.+|.++..+|++++|+.+|++++..+|+++
T Consensus 1 ~~~a~~~~~~---------g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQ---------GDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHC---------THHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHc---------CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3578888888 99999999999999955 99999999999999999999999999999999999874
No 136
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.03 E-value=6.1e-10 Score=92.29 Aligned_cols=211 Identities=10% Similarity=0.015 Sum_probs=151.9
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+-..|+-|+.+|.| ++||.||.+++..+|.++..+.+.|..|++...|..|..-+..++.++... .++...+.+-..+
T Consensus 100 iKE~GN~yFKQgKy-~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 100 IKERGNTYFKQGKY-EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHhhhhhhhccch-hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45679999999999 999999999999999999999999999999999999999999999999887 8899999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh------hhhcCCC--------------------ChhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS------FFVTGSW--------------------DHSKL 199 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~------~~~~~~~--------------------~~~~~ 199 (331)
| +..+|.+.++.++++.|++.+.--.++.+-.-. -...|.. ..|.+
T Consensus 179 g--------~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~ 250 (536)
T KOG4648|consen 179 G--------NNMEAKKDCETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMR 250 (536)
T ss_pred h--------hHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhcc
Confidence 6 599999999999999998765544333321100 0000100 00222
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
+.++.++-+.+.. ...+..+..+ +..+.+..++..|+.-..++...+|..... ...+.+...+|...++...++.+
T Consensus 251 ~~~i~~~~~~~A~--~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~ 327 (536)
T KOG4648|consen 251 SVPVVDVVSPRAT--IDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTA 327 (536)
T ss_pred ccceeEeeccccc--cCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhhe
Confidence 2233333222221 1122222233 667777788888888888888888876555 66666777778888888888887
Q ss_pred hhHHHHHhhcc
Q 020060 279 KRVASLASSLA 289 (331)
Q Consensus 279 ~~l~~~~~~~~ 289 (331)
..+.+-.....
T Consensus 328 ~~~~P~~~~~~ 338 (536)
T KOG4648|consen 328 VKVAPAVETPK 338 (536)
T ss_pred eeeccccccch
Confidence 77766544433
No 137
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=9.7e-08 Score=80.01 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=154.5
Q ss_pred ccchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHH
Q 020060 32 DDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLG 106 (331)
Q Consensus 32 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg 106 (331)
....++..+.+.-++..+...... .+.......+.++++.+...-+| .+++.+-+..+.+.... ..+...+|
T Consensus 53 ~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f-~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~ 129 (518)
T KOG1941|consen 53 HSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEF-HKTISYCKTCLGLPGTRAGQLGGQVSLSMG 129 (518)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHhcCCCCCcccccchhhhhHH
Confidence 335556666666666666654421 02334556778888888888897 88999888888775433 35777899
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------ 173 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------ 173 (331)
..+..++.+++++++|++++.+...+ .+...+|..+..+ +++++|.-+..+|.++-...
T Consensus 130 ~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l--------~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 130 NAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL--------KDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH--------HhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 99999999999999999999876443 5677889888866 57999999999998764322
Q ss_pred ----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 174 ----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 174 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
..+.+.++..+... |..-+|.++.+.+.++.....|. ....-+|.+|...|+.+.|..-|++|
T Consensus 202 ~kyr~~~lyhmaValR~~---------G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 202 LKYRAMSLYHMAVALRLL---------GRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHHHHh---------cccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 23567788888888 99999999999998854334443 44688999999999999999999999
Q ss_pred HhcCCCCcHH
Q 020060 246 ALKDPSLNAT 255 (331)
Q Consensus 246 l~~~~~~~~~ 255 (331)
+.....-.+.
T Consensus 273 m~~m~~~gdr 282 (518)
T KOG1941|consen 273 MGTMASLGDR 282 (518)
T ss_pred HHHHhhhhhh
Confidence 9876654443
No 138
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.02 E-value=6.3e-10 Score=76.20 Aligned_cols=80 Identities=25% Similarity=0.345 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
+++++|+.+++++++.+|. +...++.+|.++... |++++|+..+++ .+.+ +.++..++.+|.++..
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~---------~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ---------GKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLK 70 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT---------THHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC---------CCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHH
Confidence 4588888888888888874 456777788888888 888888888888 5533 6777777788888888
Q ss_pred hhcHHHHHHHHHHH
Q 020060 232 LENYERALSGFEAS 245 (331)
Q Consensus 232 ~g~~~~A~~~~~~a 245 (331)
+|++++|+..|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 88888888888764
No 139
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.02 E-value=9.7e-09 Score=74.44 Aligned_cols=95 Identities=19% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC---
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--- 172 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--- 172 (331)
.+++.+|.++...|+.++|+.+|++++....+. .++..+|..+..+| ++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCccc
Confidence 456777777777777777777777777765433 56677777777776 377777777777777666
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+......++.++... |+.++|+..+-.++.
T Consensus 74 ~~~l~~f~Al~L~~~---------gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNL---------GRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHH
Confidence 556666677777766 777777777776664
No 140
>PRK15331 chaperone protein SicA; Provisional
Probab=99.01 E-value=1.6e-08 Score=76.21 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=65.6
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+.++.-+..+..|.-++..|++++|...|+-....+|.+ ..|..||.++..++ +|++|+..|..+..++++
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--------~y~~Ai~~Y~~A~~l~~~ 103 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--------QFQKACDLYAVAFTLLKN 103 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHcccC
Confidence 344445566666666666666666666666666666666 66666666666443 466666666666666666
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+|...+..|.|++.+ |+.+.|..+|+.++.
T Consensus 104 dp~p~f~agqC~l~l---------~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 104 DYRPVFFTGQCQLLM---------RKAAKARQCFELVNE 133 (165)
T ss_pred CCCccchHHHHHHHh---------CCHHHHHHHHHHHHh
Confidence 666666666666666 666666666666664
No 141
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.00 E-value=1.1e-08 Score=85.11 Aligned_cols=104 Identities=16% Similarity=0.159 Sum_probs=92.7
Q ss_pred hHHHHHhhhhh-hcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHH
Q 020060 64 ATYEYLKGKIL-DVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~ 135 (331)
...+|..+..+ ...|+| ++|+..|++.++..|+. +.+++.+|.+|+..|++++|+..|.++++..|++ .++
T Consensus 142 e~~~Y~~A~~l~~~~~~y-~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQ-DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 46677777765 557898 99999999999999987 5899999999999999999999999999999986 889
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
+.+|.++..+| ++++|...|+++++..|+...+
T Consensus 221 ~klg~~~~~~g--------~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKG--------DTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999887 5999999999999999987643
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.99 E-value=2.5e-08 Score=75.94 Aligned_cols=117 Identities=12% Similarity=0.050 Sum_probs=96.4
Q ss_pred HHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHH
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGN 182 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 182 (331)
...++...+...+.+.+.-.|+. .+.+.+|.++...| ++++|...|+.++...|+. +.+...++.
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--------~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG--------DYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 36788888888899999888877 56677888888776 5999999999999877554 357788899
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
++... |++++|+..++.. . ..+..+.++..+|.++...|++++|...|++++
T Consensus 94 ~~~~~---------~~~d~Al~~L~~~-~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQ---------GQYDEALATLQQI-P--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHc---------CCHHHHHHHHHhc-c--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99888 9999999999763 2 235667788899999999999999999999875
No 143
>PRK15331 chaperone protein SicA; Provisional
Probab=98.97 E-value=2.7e-08 Score=74.99 Aligned_cols=101 Identities=12% Similarity=0.028 Sum_probs=92.1
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
...+..|.-++..| ++++|...|+-....+|.++..|..||.++... ++|++|+..|..+...
T Consensus 38 e~iY~~Ay~~y~~G--------k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~---------k~y~~Ai~~Y~~A~~l 100 (165)
T PRK15331 38 DGLYAHAYEFYNQG--------RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLK---------KQFQKACDLYAVAFTL 100 (165)
T ss_pred HHHHHHHHHHHHCC--------CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHc
Confidence 67777888888776 599999999999999999999999999999999 9999999999999986
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
. +++|...+..|.|+..+|+...|..+|..++. .|.+.
T Consensus 101 ~--~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 101 L--KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred c--cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence 5 99999999999999999999999999999998 45544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.97 E-value=2e-09 Score=73.66 Aligned_cols=80 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred ccccHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPS--LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQA 153 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~ 153 (331)
.|+| +.|+.+++++++..|. +...++.+|.||+..|++++|+..+++ .+.+|.+ ...+.+|.++..+|
T Consensus 2 ~~~y-~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~------- 72 (84)
T PF12895_consen 2 QGNY-ENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG------- 72 (84)
T ss_dssp TT-H-HHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-------
T ss_pred CccH-HHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC-------
Confidence 5787 9999999999999995 567788899999999999999999999 8888877 77788899999887
Q ss_pred HHHHHHHHHHHHH
Q 020060 154 EIVEESIQHAKEA 166 (331)
Q Consensus 154 ~~~~~A~~~~~~a 166 (331)
++++|+++++++
T Consensus 73 -~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 -KYEEAIKALEKA 84 (84)
T ss_dssp --HHHHHHHHHHH
T ss_pred -CHHHHHHHHhcC
Confidence 599999999875
No 145
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.96 E-value=3.4e-07 Score=73.87 Aligned_cols=170 Identities=11% Similarity=0.034 Sum_probs=123.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K 133 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~ 133 (331)
...+..||..|......|+| ++|+..|+......|.. ..+...++.+++..++++.|+...++-+.+.|.+ -
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~-~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 31 NLPASELYNEGLTELQKGNY-EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence 45677899999999999998 99999999999988865 5788999999999999999999999999999987 5
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhhhcCCCCh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~~~ 196 (331)
+++..|.+++..-+..........+|+..+++.++..|++.-+- ...|..|...
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr--------- 180 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR--------- 180 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 66677777664433333333457899999999999999875321 1234444444
Q ss_pred hhHHHHHHHHHHHHhchhcCCC---hhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSN---PDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
|.+..|+..++..++. -|+. .+++..+..+|..+|-.++|.+.-
T Consensus 181 ~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 181 GAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred cChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 6666666666666652 1222 244556666666666666665543
No 146
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=4.7e-08 Score=81.65 Aligned_cols=163 Identities=13% Similarity=0.114 Sum_probs=113.9
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHh
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSM 145 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 145 (331)
+-.-+|.+++.+|+| ++|...|.-+...+.-+++.+.++|.|++..|.|.+|...-.++-+.--....++.++. ++
T Consensus 59 ~~lWia~C~fhLgdY-~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlah---kl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDY-EEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAH---KL 134 (557)
T ss_pred HHHHHHHHHHhhccH-HHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHH---Hh
Confidence 333467888888887 88888888877766666778888888888888888887665554221111133333333 23
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
+ -++-+-.|.+.++-. .+-...|+.+.... -.|.+|++.|.+++..+ |.....-.++
T Consensus 135 n---------dEk~~~~fh~~LqD~---~EdqLSLAsvhYmR---------~HYQeAIdvYkrvL~dn--~ey~alNVy~ 191 (557)
T KOG3785|consen 135 N---------DEKRILTFHSSLQDT---LEDQLSLASVHYMR---------MHYQEAIDVYKRVLQDN--PEYIALNVYM 191 (557)
T ss_pred C---------cHHHHHHHHHHHhhh---HHHHHhHHHHHHHH---------HHHHHHHHHHHHHHhcC--hhhhhhHHHH
Confidence 2 233334444444322 13345566665555 69999999999999855 7777888999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|.||+++.-|+-+...+.-.++..|+.+.+
T Consensus 192 ALCyyKlDYydvsqevl~vYL~q~pdStiA 221 (557)
T KOG3785|consen 192 ALCYYKLDYYDVSQEVLKVYLRQFPDSTIA 221 (557)
T ss_pred HHHHHhcchhhhHHHHHHHHHHhCCCcHHH
Confidence 999999999999999999999999998887
No 147
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=3.2e-08 Score=80.80 Aligned_cols=164 Identities=16% Similarity=0.210 Sum_probs=93.8
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh-----
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN----- 151 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~----- 151 (331)
.+| ..||+++..-.+.+|.+-.++..+|.||+...+|..|..||++.-.+.|.. ...+..++.+++-+.....
T Consensus 24 ~ry-~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 24 ARY-ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred hhH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 344 555555555555555555555555555555555555555555555555554 2222222222222110000
Q ss_pred ----------HHHHHHHHHHHH-------HHHhcCCC--CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 152 ----------QAEIVEESIQHA-------KEAITLDV--KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 152 ----------~~~~~~~A~~~~-------~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
+.=+.+.|+.+- +..++.-| +......+.|.+.+.. |+++.|+..|+.+++.
T Consensus 103 ~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke---------gqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 103 LLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE---------GQYEAAVQKFQAALQV 173 (459)
T ss_pred HhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc---------ccHHHHHHHHHHHHhh
Confidence 000111222111 11122223 4566777888888877 9999999999999984
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh----cCCCCc
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASAL----KDPSLN 253 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~~~~~ 253 (331)
. ..+|.+-++++.++++.|+++.|+++....+. ..|...
T Consensus 174 s--GyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElg 216 (459)
T KOG4340|consen 174 S--GYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELG 216 (459)
T ss_pred c--CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccC
Confidence 4 78888899999999999999999987666554 455543
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.9e-08 Score=82.75 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+......|..|++.|+|..|..-|++++..-......-. - ..+....+ -..++.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~-----e------------e~~~~~~~---------k~~~~l 261 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDE-----E------------EQKKAEAL---------KLACHL 261 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCH-----H------------HHHHHHHH---------HHHHhh
Confidence 344567899999999999999999999876543200000 0 00111111 123567
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
+++.|+..+ ++|.+|+.++.+++... |.|..+++..|.++..+|+|+.|...|+++++++|+|..+ ..
T Consensus 262 NlA~c~lKl---------~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~e 330 (397)
T KOG0543|consen 262 NLAACYLKL---------KEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAE 330 (397)
T ss_pred HHHHHHHhh---------hhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 888888888 88888999999888855 8888888999999999999999999999999999988776 77
Q ss_pred HHHHHHHHHHHHHH
Q 020060 258 VQMMVNLLDKIENL 271 (331)
Q Consensus 258 l~~~~~~l~~~~~a 271 (331)
+..+.....++.+.
T Consensus 331 l~~l~~k~~~~~~k 344 (397)
T KOG0543|consen 331 LIKLKQKIREYEEK 344 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666666555
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.8e-08 Score=82.82 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=109.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+...-..|+.++..|+| ..|...|++++..-.. -..++.+++.||..+++|.+|+.+..++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~-~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKF-KLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHhhhHHHhhchH-HHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 34455779999999998 9999999998875321 1347899999999999999999999999999
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH-HHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ-SLKAY 206 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-A~~~~ 206 (331)
+|.+ .++++.|.++..+| +++.|...|++++++.|.|..+...+..+-... .++.+ ..+.|
T Consensus 287 ~~~N~KALyRrG~A~l~~~--------e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~---------~~~~~kekk~y 349 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALG--------EYDLARDDFQKALKLEPSNKAARAELIKLKQKI---------REYEEKEKKMY 349 (397)
T ss_pred CCCchhHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence 9999 99999999999887 499999999999999999999988888887766 54443 46667
Q ss_pred HHHHh
Q 020060 207 QNAEK 211 (331)
Q Consensus 207 ~~al~ 211 (331)
.+...
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66664
No 150
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=1.1e-08 Score=86.74 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=129.3
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLN--PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS 144 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 144 (331)
...++..+...++- +.++.-++..+.-. +.++......|.++...|++++|+..+.+. .+-+.......++..
T Consensus 69 v~~la~y~~~~~~~-e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 69 VRLLAEYLSSPSDK-ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHHCTSTTH-HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccch-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHH
Confidence 34445444443442 55555555544332 234556667778888899999999888764 222666667778887
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
++ +++.|.+.++.+-+.+.+..-+....+++.+.. | .+++.+|...|+..... .+.++..++.
T Consensus 144 ~~--------R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~----g---~e~~~~A~y~f~El~~~--~~~t~~~lng 206 (290)
T PF04733_consen 144 MN--------RPDLAEKELKNMQQIDEDSILTQLAEAWVNLAT----G---GEKYQDAFYIFEELSDK--FGSTPKLLNG 206 (290)
T ss_dssp TT---------HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHH----T---TTCCCHHHHHHHHHHCC--S--SHHHHHH
T ss_pred cC--------CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----C---chhHHHHHHHHHHHHhc--cCCCHHHHHH
Confidence 75 699999999999888766544444444444444 1 14689999999997653 3678888999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHH
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLK 273 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~ 273 (331)
+|.++..+|+|++|...+.+++..+|+++.. .++..+...+|+..++..
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 9999999999999999999999999999988 888888888888855443
No 151
>PLN03077 Protein ECB2; Provisional
Probab=98.89 E-value=2.1e-07 Score=91.57 Aligned_cols=178 Identities=10% Similarity=0.016 Sum_probs=140.9
Q ss_pred hhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc--CCChHHHhhHHHHHHHhccCc
Q 020060 72 KILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--GPNKKILCQLSMLERSMAQGS 149 (331)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~~~~~g~~~ 149 (331)
..|...|+. ++|...|... +.+..+|..+...|...|+.++|+..|++..+. .|+...+..+-..+...|
T Consensus 532 ~~y~k~G~~-~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g--- 603 (857)
T PLN03077 532 DLYVRCGRM-NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG--- 603 (857)
T ss_pred HHHHHcCCH-HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC---
Confidence 556677886 8888888875 556788999999999999999999999988764 466655555556666555
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
.+++|..+|+...+..+- +...|..+..++... |++++|.+.+++.- . ..++..|..+-.
T Consensus 604 -----~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~---------G~~~eA~~~~~~m~---~-~pd~~~~~aLl~ 665 (857)
T PLN03077 604 -----MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA---------GKLTEAYNFINKMP---I-TPDPAVWGALLN 665 (857)
T ss_pred -----hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC---------CCHHHHHHHHHHCC---C-CCCHHHHHHHHH
Confidence 599999999998844332 346778888888888 99999999988752 1 334666777777
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 228 VNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
.+...|+.+.|....++.++++|++... ..++.++...|+++++.+..
T Consensus 666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 8888899999999999999999999887 88888999999988887543
No 152
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.4e-06 Score=68.93 Aligned_cols=213 Identities=14% Similarity=0.186 Sum_probs=145.4
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKIL 135 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 135 (331)
+.+.++..-|+.|....+| ..|=..|.++-...- +-+..+...+.||.. ++.++|+.++++++++..+..-+
T Consensus 32 eAadl~~~Aan~yklaK~w-~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNW-SAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred HHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHH
Confidence 4455566666777777776 777777777765421 235566666777654 59999999999999998766333
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
..-+..+..++..++....++++|+.+|+++-+..... -..+...+..-..+ ++|.+|+..|++.
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l---------eqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL---------EQYSKAIDIYEQV 180 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence 33444444555444555578999999999998754322 12333444444455 9999999999999
Q ss_pred HhchhcCCChh-------HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHH-----HHHHHHHHHHHh
Q 020060 210 EKDERMKSNPD-------LYFNCATVNKYLENYERALSGFEASALKDPSLNAT---EEVQMMV-----NLLDKIENLLKG 274 (331)
Q Consensus 210 l~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~-----~~l~~~~~a~~~ 274 (331)
.... -+++- .++.-|.|+....+.-.+...+++...++|..... .-+..+. .....+.+.++.
T Consensus 181 a~~s--~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~fte~vke 258 (288)
T KOG1586|consen 181 ARSS--LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKE 258 (288)
T ss_pred HHHh--ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 8733 44442 25777889999899999999999999999997763 2222222 233556666788
Q ss_pred hhhhhhHHHHHhh
Q 020060 275 HAKTKRVASLASS 287 (331)
Q Consensus 275 ~~~a~~l~~~~~~ 287 (331)
|...-+|+.....
T Consensus 259 fDsisrLD~W~tt 271 (288)
T KOG1586|consen 259 FDSISRLDQWKTT 271 (288)
T ss_pred hhccchHHHHHHH
Confidence 8888777665444
No 153
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=6.1e-08 Score=79.19 Aligned_cols=159 Identities=21% Similarity=0.204 Sum_probs=120.1
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
..+++.+++++...... .| .....+..+|.+|+...+| ..|-.+|.+...+.|........-+..++..+.+..|
T Consensus 23 d~ry~DaI~~l~s~~Er---~p-~~rAgLSlLgyCYY~~Q~f-~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 23 DARYADAIQLLGSELER---SP-RSRAGLSLLGYCYYRLQEF-ALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HhhHHHHHHHHHHHHhc---Cc-cchHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 35667888888765542 23 3344677899999999998 9999999999999999888888888888888888888
Q ss_pred HHHHHHHHhc----------------C--------------CC-h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 119 KNCFNLALSK----------------G--------------PN-K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 119 ~~~~~~al~~----------------~--------------~~-~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
+......... . |. + ....+.|.+.+ +.++++.|++-|+.
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gClly--------kegqyEaAvqkFqa 169 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLY--------KEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheee--------ccccHHHHHHHHHH
Confidence 8776554321 0 10 0 12223333333 44679999999999
Q ss_pred HhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 166 AITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 166 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+++...-.+-.-++++.+++.. +++..|+.+....+... ..++|+
T Consensus 170 AlqvsGyqpllAYniALaHy~~---------~qyasALk~iSEIieRG-~r~HPE 214 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSS---------RQYASALKHISEIIERG-IRQHPE 214 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhh---------hhHHHHHHHHHHHHHhh-hhcCCc
Confidence 9999988899999999999998 99999999999888632 234444
No 154
>PLN03077 Protein ECB2; Provisional
Probab=98.83 E-value=3.7e-07 Score=89.93 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=51.2
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--CCCCchhHHHHHHHHH
Q 020060 108 CIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--DVKDGNSWYNLGNACL 185 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 185 (331)
.|.+.|+.++|...|+.. .|+...|..+...+...| +.++|++.|++..+. .|+ ..++..+-.++.
T Consensus 533 ~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G--------~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~ 600 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHG--------KGSMAVELFNRMVESGVNPD-EVTFISLLCACS 600 (857)
T ss_pred HHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHh
Confidence 344444444444444433 222234444444444333 355555555554442 222 223333333344
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
.. |.+++|..+|+...+......+...|..+..++.+.|++++|...+++
T Consensus 601 ~~---------g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 601 RS---------GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred hc---------ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44 555555555555542111112223455555555555555555555554
No 155
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.81 E-value=1.4e-07 Score=69.60 Aligned_cols=116 Identities=13% Similarity=0.119 Sum_probs=97.3
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
+...+..++..|...+..|+| .+|++.|+......|.. ..+...+|.+|+..+++++|+..+++-++++|.+
T Consensus 6 ~~~~~~~ly~~a~~~l~~~~Y-~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 6 PDKSPQELYQEAQEALQKGNY-EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred CCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc
Confidence 345567788999999999999 99999999999988764 6789999999999999999999999999999998
Q ss_pred HHHhhHHHHHHHhcc-------CchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 133 KILCQLSMLERSMAQ-------GSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~-------~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+++..|.+++.... ......+...+|...|++.++..|++..+
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 688889988887653 22223345889999999999999987543
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.80 E-value=1.9e-08 Score=65.77 Aligned_cols=64 Identities=27% Similarity=0.400 Sum_probs=56.9
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
...|+| ++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|++ ..+..++
T Consensus 2 l~~~~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDY-DEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHH-HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 457897 999999999999999999999999999999999999999999999999997 4444444
No 157
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.79 E-value=2.4e-06 Score=69.74 Aligned_cols=200 Identities=22% Similarity=0.241 Sum_probs=154.2
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVK--LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.......+..+...+.+ ..+...+...+. ..+.....+...|..+...+++..++..+..++...+.. ......+.
T Consensus 59 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRL-EEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccH-HHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 45666778888888886 889999988887 678888899999999999999999999999999888776 44444444
Q ss_pred -HHHHhccCchhHHHHHHHHHHHHHHHhcCCC---CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 141 -LERSMAQGSENQAEIVEESIQHAKEAITLDV---KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 141 -~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
++...| +++.|...+.+++...| .....+...+..+... ++++.|+..+.+++... +
T Consensus 138 ~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~--~ 198 (291)
T COG0457 138 GALYELG--------DYEEALELYEKALELDPELNELAEALLALGALLEAL---------GRYEEALELLEKALKLN--P 198 (291)
T ss_pred HHHHHcC--------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh---------cCHHHHHHHHHHHHhhC--c
Confidence 677665 49999999999988766 3445555556655555 89999999999999844 7
Q ss_pred C-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 217 S-NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 217 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
. ....+..++..+...+++..|...+..++...|..... ...+..+...+....+...+.++.+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 199 DDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 7 67889999999999999999999999999999984444 5555555555556677666666555443
No 158
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=7.8e-07 Score=74.56 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=129.7
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~ 151 (331)
+....+| ..|+..++-.+..+.... .....+|.|++..|+|++|+..|.-+...+.-+ ..+.+++.+.+.+|
T Consensus 32 fls~rDy-tGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg----- 105 (557)
T KOG3785|consen 32 FLSNRDY-TGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG----- 105 (557)
T ss_pred HHhcccc-hhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH-----
Confidence 3456788 889999998887765543 566778999999999999999999988755444 88999999999887
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
.|.+|.....++ |+++-....+-.+-... ++ ++-+-.|...+. +..+-...+|.+++.
T Consensus 106 ---~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl---------nd-Ek~~~~fh~~Lq-----D~~EdqLSLAsvhYm 163 (557)
T KOG3785|consen 106 ---QYIEAKSIAEKA----PKTPLCIRLLFHLAHKL---------ND-EKRILTFHSSLQ-----DTLEDQLSLASVHYM 163 (557)
T ss_pred ---HHHHHHHHHhhC----CCChHHHHHHHHHHHHh---------Cc-HHHHHHHHHHHh-----hhHHHHHhHHHHHHH
Confidence 599998877654 55554444444443333 33 344555666553 233556789999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
.-.|.+|+..|++++.-+|+.... ..++.++.++.-++-+.
T Consensus 164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsq 205 (557)
T KOG3785|consen 164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQ 205 (557)
T ss_pred HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHH
Confidence 999999999999999999998777 88899998888777665
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.78 E-value=1.9e-07 Score=77.77 Aligned_cols=106 Identities=11% Similarity=0.106 Sum_probs=89.7
Q ss_pred HHHhhHHHHH-HHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 133 KILCQLSMLE-RSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 133 ~~~~~l~~~~-~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
...+..+..+ ...| ++++|+..|+..++..|++ +.+++.+|.+|+.. |++++|+..|++
T Consensus 143 ~~~Y~~A~~l~~~~~--------~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~---------g~~~~A~~~f~~ 205 (263)
T PRK10803 143 NTDYNAAIALVQDKS--------RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNK---------GKKDDAAYYFAS 205 (263)
T ss_pred HHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHH
Confidence 5566666654 3333 5999999999999999988 47999999999999 999999999999
Q ss_pred HHhch-hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 209 AEKDE-RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 209 al~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+++.. ..|..+++++.+|.++..+|++++|...|+++++..|+...+
T Consensus 206 vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 206 VVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99733 123356889999999999999999999999999999998754
No 160
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.77 E-value=6.2e-06 Score=70.25 Aligned_cols=69 Identities=13% Similarity=0.038 Sum_probs=50.5
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHH-------------------------------hcCCCCcHH-HHHHHHHHHH
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASA-------------------------------LKDPSLNAT-EEVQMMVNLL 265 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al-------------------------------~~~~~~~~~-~~l~~~~~~l 265 (331)
+|.+...++.-+...|+.++|.+..++++ +..|+++.. ..+|.++...
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 45555566666667777777776666655 456777777 8999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHHh
Q 020060 266 DKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 266 ~~~~~a~~~~~~a~~l~~~~~ 286 (331)
+.+.+|.+.+..|....+...
T Consensus 342 ~~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 342 KLWGKASEALEAALKLRPSAS 362 (400)
T ss_pred hHHHHHHHHHHHHHhcCCChh
Confidence 999999999888876655433
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.76 E-value=3.7e-07 Score=66.23 Aligned_cols=95 Identities=18% Similarity=0.127 Sum_probs=82.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---h-HHHhh
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---K-KILCQ 137 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~-~~~~~ 137 (331)
.++|.+|.++...|+. ++|+.+|++++...... ..++..+|.++...|++++|+..+++++...|+ + .....
T Consensus 2 ~~~~~~A~a~d~~G~~-~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 2 RALYELAWAHDSLGRE-EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred chHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4688999999999996 99999999999975443 678999999999999999999999999999888 4 55566
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
++.++...| +.++|+..+-.++.
T Consensus 81 ~Al~L~~~g--------r~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLG--------RPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCC--------CHHHHHHHHHHHHH
Confidence 888888887 59999999887764
No 162
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.75 E-value=1.4e-07 Score=76.81 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=95.1
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLS 139 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~ 139 (331)
.|..+.-++..|+| ..|...|..-++..|+. +++++.||.+++.+|+++.|...|..+.+-.|++ +.++.+|
T Consensus 144 ~Y~~A~~~~ksgdy-~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDY-AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 78999999999998 99999999999999975 7899999999999999999999999999999987 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.+...+| +.++|...|++.++..|..+.+..
T Consensus 223 ~~~~~l~--------~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 223 VSLGRLG--------NTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHhc--------CHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999887 599999999999999998876543
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.75 E-value=4.8e-08 Score=64.83 Aligned_cols=61 Identities=25% Similarity=0.476 Sum_probs=58.6
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+|...++| ++|+.++++++.++|+++..|..+|.++...|++++|+..|+++++..|++
T Consensus 2 ~~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDY-EEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCH-HHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 5678889998 999999999999999999999999999999999999999999999999987
No 164
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.75 E-value=1.8e-06 Score=66.00 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=102.2
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHH
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-LDVKDGNSWYNLGNACL 185 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~ 185 (331)
....+.=|.+.+..-..+.+...|+....+.++..+..+| ++.+|...|++++. +...++..+..++++.+
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elG--------r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQNRYRLANALAELG--------RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhh--------hhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 3334444556666666666667777666677777777665 47777777777765 45566667777777777
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLL 265 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l 265 (331)
.. +++..|...+++..+.+..-..|+....+|.++...|.+.+|...|+.++...|+.......+..+..+
T Consensus 136 a~---------~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~q 206 (251)
T COG4700 136 AI---------QEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQ 206 (251)
T ss_pred hh---------ccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 76 777777777777776442234556677777777777777777777777777777765556677777777
Q ss_pred HHHHHHHHh
Q 020060 266 DKIENLLKG 274 (331)
Q Consensus 266 ~~~~~a~~~ 274 (331)
|+..++...
T Consensus 207 gr~~ea~aq 215 (251)
T COG4700 207 GRLREANAQ 215 (251)
T ss_pred cchhHHHHH
Confidence 766666533
No 165
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.6e-06 Score=77.17 Aligned_cols=160 Identities=12% Similarity=0.067 Sum_probs=91.7
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
+..+.|.+..+.. ++|+..++ .+++.+.......|.+++++|+|++|...|+..++.+.++ +........-.
T Consensus 83 fEKAYc~Yrlnk~-Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~--- 155 (652)
T KOG2376|consen 83 FEKAYCEYRLNKL-DEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV--- 155 (652)
T ss_pred HHHHHHHHHcccH-HHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH---
Confidence 4455555555553 55555554 2333344445555555555555555555555555444333 11111111000
Q ss_pred cCchhHHHHHHHHHHH-HHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-----cCCC-
Q 020060 147 QGSENQAEIVEESIQH-AKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-----MKSN- 218 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~-~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~- 218 (331)
..+... ..+.+...|. +.+.+++.+.++... |+|.+|++.++++++.+. ...+
T Consensus 156 ----------~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~---------gky~qA~elL~kA~~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 156 ----------AAALQVQLLQSVPEVPEDSYELLYNTACILIEN---------GKYNQAIELLEKALRICREKLEDEDTNE 216 (652)
T ss_pred ----------HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc---------ccHHHHHHHHHHHHHHHHHhhcccccch
Confidence 000000 2222223333 445778888888888 999999999999954210 0111
Q ss_pred -------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 219 -------PDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 219 -------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..+...++.++..+|+..+|...|...++.+|.+.
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 12378899999999999999999999998877654
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=2.9e-07 Score=80.66 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=105.0
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccC
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQG 148 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~ 148 (331)
+-..+...+++ +.|+..+++..+.+|+ +...++.++...++..+|+..+++++...|.+ ..+...+..+...+
T Consensus 175 Ll~~l~~t~~~-~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-- 248 (395)
T PF09295_consen 175 LLKYLSLTQRY-DEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK-- 248 (395)
T ss_pred HHHHHhhcccH-HHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Confidence 34455567887 9999999999988875 56779999999999999999999999999988 77777888888665
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 149 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
+++.|+.+.++++...|.+-..|..|+.+|... |+++.|+..++.+
T Consensus 249 ------~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~---------~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 249 ------KYELALEIAKKAVELSPSEFETWYQLAECYIQL---------GDFENALLALNSC 294 (395)
T ss_pred ------CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc---------CCHHHHHHHHhcC
Confidence 599999999999999999999999999999999 9999999887754
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.73 E-value=3.8e-07 Score=79.99 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=102.1
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
+-.++...++++.|+..|++..+.+|+. ...++.++...+ +-.+|+..+.+++...|.+...+...+..+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~--------~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMN--------EEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcC--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4455566788999999999999988874 444677777554 367999999999999999999999999999
Q ss_pred HhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 185 LTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
... ++++.|+...++++... |.+...|+.|+.+|..+|++++|+..+..+-
T Consensus 245 l~k---------~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSK---------KKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred Hhc---------CCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 988 99999999999999955 9999999999999999999999998776544
No 168
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.70 E-value=4.3e-07 Score=69.16 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCch--hHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSE--NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
|+.|.+.++.....+|.+ +.+++.|.++..+.+... +....+++|+.-|++|+.++|+...++..+|++|...
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 567777777778888877 777777777777765433 3446799999999999999999999999999999987
No 169
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.69 E-value=2.9e-08 Score=66.87 Aligned_cols=68 Identities=24% Similarity=0.342 Sum_probs=58.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+..+.++..+|.+|...|+| ++|+.+|++++++. |..+.++.++|.++...|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRY-DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 46678899999999999998 99999999999762 2236789999999999999999999999998763
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.68 E-value=1.1e-07 Score=63.10 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=58.8
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
..+|... +++++|+.++++++... |.++..+..+|.++..+|++.+|...|+++++..|++...
T Consensus 2 ~~~~~~~---------~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 2 KQIYLQQ---------EDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHHhC---------CCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4556666 99999999999999965 9999999999999999999999999999999999998875
No 171
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=2.5e-06 Score=84.79 Aligned_cols=200 Identities=10% Similarity=-0.004 Sum_probs=148.0
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
......+.++...|++ ++|...+..+....+. .......+|.++...|++++|..++++++...+..
T Consensus 410 ~l~~~~a~~~~~~g~~-~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 410 RLVLLQAWLAQSQHRY-SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred chHHHHHHHHHHCCCH-HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 3445677778888997 9999999988764321 23455667889999999999999999999865543
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.+...+|.++...| ++++|...+.+++...... ..++..+|.++... |++++|.
T Consensus 489 ~~~~a~~~lg~~~~~~G--------~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~---------G~~~~A~ 551 (903)
T PRK04841 489 SRIVATSVLGEVHHCKG--------ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ---------GFLQAAY 551 (903)
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC---------CCHHHHH
Confidence 24456777777776 5999999999998754322 23556788888888 9999999
Q ss_pred HHHHHHHhchhcC---C---ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC-----cHH-HHHHHHHHHHHHHHHH
Q 020060 204 KAYQNAEKDERMK---S---NPDLYFNCATVNKYLENYERALSGFEASALKDPSL-----NAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 204 ~~~~~al~~~~~~---~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~-~~l~~~~~~l~~~~~a 271 (331)
..+++++...... . ....+..+|.++...|++++|...+.+++...... ... ..++.+....|++.+|
T Consensus 552 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 552 ETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999998742111 1 12335678999999999999999999998864321 112 5577888888999999
Q ss_pred HHhhhhhhhHH
Q 020060 272 LKGHAKTKRVA 282 (331)
Q Consensus 272 ~~~~~~a~~l~ 282 (331)
...+.++..+.
T Consensus 632 ~~~l~~a~~~~ 642 (903)
T PRK04841 632 RRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHH
Confidence 88877776653
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.65 E-value=1.2e-06 Score=74.49 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=121.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC--C----cHHHHHHHHHHHHHh-
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP--S----LADAWLCLGSCIWKK- 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~----~~~~~~~lg~~~~~~- 112 (331)
..+.++..+..... ++...+..+...+.++... ++ ++|+.+|++++.+.- + -+.++..+|.+|...
T Consensus 56 ~ay~kAa~~~~~~~-----~~~~Aa~~~~~Aa~~~k~~-~~-~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~ 128 (282)
T PF14938_consen 56 EAYEKAADCYEKLG-----DKFEAAKAYEEAANCYKKG-DP-DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL 128 (282)
T ss_dssp HHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHT-TH-HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhh-CH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc
Confidence 34444444444433 4556677777777777666 86 999999999998732 1 256889999999999
Q ss_pred CChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-------hhHH
Q 020060 113 GDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-------NSWY 178 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~ 178 (331)
|++++|+.+|++|+.+.... ..+..++.++..+| +|++|++.|++.....-+++ ..++
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--------~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--------RYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 99999999999999874322 56677888988886 59999999999887543222 2455
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----HhhHHHHHH--HhhcHHHHHHHHHHHHhc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----YFNCATVNK--YLENYERALSGFEASALK 248 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~ 248 (331)
..+.+++.. |++..|...+++..... |..... ...+-.++. ....+..|+.-|.+.-++
T Consensus 201 ~a~l~~L~~---------~D~v~A~~~~~~~~~~~--~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 201 KAILCHLAM---------GDYVAARKALERYCSQD--PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp HHHHHHHHT---------T-HHHHHHHHHHHGTTS--TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred HHHHHHHHc---------CCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 677788877 99999999999988743 543322 222222222 223466666666554333
No 173
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.65 E-value=3.2e-07 Score=69.84 Aligned_cols=102 Identities=24% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCch
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD----------LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSE 150 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~ 150 (331)
+.|.+.++.....+|.+++++++-|.++..+.+ +++|+.-|++++.++|+. .+++++|.++..+|....
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 778999999999999999999999988876633 577899999999999999 999999999998876432
Q ss_pred h---HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 020060 151 N---QAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183 (331)
Q Consensus 151 ~---~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 183 (331)
+ ....|++|..+|++|.+.+|++......|..+
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2 44569999999999999999987666555443
No 174
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.63 E-value=7.8e-06 Score=66.62 Aligned_cols=171 Identities=26% Similarity=0.351 Sum_probs=145.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHH-HHHHhCChhHHHHHHHHHHhcCCC--h--HHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGS-CIWKKGDLPAAKNCFNLALSKGPN--K--KIL 135 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~--~--~~~ 135 (331)
......+...|..+...+++ ..++..+.+++...+.........+. ++...|+++.|...|.+++...|. . ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKY-EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred cchHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 45566788889999999997 99999999999988887666666666 899999999999999999987773 2 445
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
...+..+...+ +++.++..+.+++...+. ....+..++..+... +++..|+..+..++...
T Consensus 171 ~~~~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~~~~~- 232 (291)
T COG0457 171 LALGALLEALG--------RYEEALELLEKALKLNPDDDAEALLNLGLLYLKL---------GKYEEALEYYEKALELD- 232 (291)
T ss_pred HHhhhHHHHhc--------CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc---------ccHHHHHHHHHHHHhhC-
Confidence 55555555443 599999999999999999 689999999999988 89999999999999854
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|.....+..++..+...+.++++...+.+++...|.
T Consensus 233 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 233 -PDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 776777888888888777899999999999999997
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.63 E-value=1.4e-07 Score=61.63 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|++++|+..|++++... |+++.+++.+|.++...|++++|...+++++..+|+++..
T Consensus 5 ~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp THHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred cCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999955 9999999999999999999999999999999999997654
No 176
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.63 E-value=7.6e-06 Score=66.01 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=101.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhC-----------ChhHHHHHHHH
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKG-----------DLPAAKNCFNL 124 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~ 124 (331)
.++....+.+.+|.+++..|+| ..|+..+++.++..|++ +.+++.+|.+++... ...+|+..|+.
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y-~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~ 115 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDY-EEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEE 115 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-H-HHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHH
Confidence 3456677888999999999998 99999999999999886 568999999977653 24589999999
Q ss_pred HHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 125 ALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 125 al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
.+...|+. .+...+..+-..+ ..--+.+|..|... |.+.
T Consensus 116 li~~yP~S~y~~~A~~~l~~l~~~l----------------------------a~~e~~ia~~Y~~~---------~~y~ 158 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRLAELRNRL----------------------------AEHELYIARFYYKR---------GKYK 158 (203)
T ss_dssp HHHH-TTSTTHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHCT---------T-HH
T ss_pred HHHHCcCchHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHc---------ccHH
Confidence 99999987 2222222222211 11224577788877 9999
Q ss_pred HHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhcHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLENYERAL 239 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~~~~A~ 239 (331)
.|+..++.+++ .-|+.+ +++..++.+|..+|..+.|.
T Consensus 159 aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999998 336655 55888999999999888554
No 177
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.62 E-value=6.3e-08 Score=65.20 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=56.9
Q ss_pred CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-c-CC---ChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 171 VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-M-KS---NPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 171 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~-~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
|+...++.++|.+|... |++++|+.+|++++.... . +. ...++.++|.++..+|++++|+.+++++
T Consensus 2 ~~~a~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 2 PDTANAYNNLARVYREL---------GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHT---------T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456889999999999 999999999999997421 1 12 2355899999999999999999999999
Q ss_pred HhcC
Q 020060 246 ALKD 249 (331)
Q Consensus 246 l~~~ 249 (331)
+++.
T Consensus 73 l~i~ 76 (78)
T PF13424_consen 73 LDIF 76 (78)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 8763
No 178
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.61 E-value=1.5e-07 Score=82.08 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=65.2
Q ss_pred CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH---HhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 169 LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL---YFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 169 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
.+|+++..|+++|.+|... |++++|+..|++++.++ |+++.+ |+|+|.+|..+|++++|+.+++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~l---------GryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSK---------GRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5788999999999999999 99999999999999966 999865 999999999999999999999999
Q ss_pred Hhc
Q 020060 246 ALK 248 (331)
Q Consensus 246 l~~ 248 (331)
+.+
T Consensus 139 Lel 141 (453)
T PLN03098 139 LRD 141 (453)
T ss_pred HHh
Confidence 997
No 179
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.60 E-value=4.7e-06 Score=70.14 Aligned_cols=205 Identities=10% Similarity=0.025 Sum_probs=151.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPS--LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
.+...+-.+..+...+|.| ++++.+--..+.. ... .-+++.+++..+....++.+++.+-...+.+....
T Consensus 41 ~Rf~~lG~l~~a~s~~g~y-~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~ 119 (518)
T KOG1941|consen 41 GRFRVLGCLVTAHSEMGRY-KEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQ 119 (518)
T ss_pred HHHHHhccchhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCccc
Confidence 3444555566677777777 7666544443332 221 25688999999999999999999998888765332
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.++..+|.+...++ .++++++.|+.|++...++ ..++..||.++..+ .++++|+
T Consensus 120 ~~gq~~l~~~~Ahlgls--------~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l---------~D~~Kal 182 (518)
T KOG1941|consen 120 LGGQVSLSMGNAHLGLS--------VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL---------KDYEKAL 182 (518)
T ss_pred ccchhhhhHHHHhhhHH--------HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH---------HhhhHHh
Confidence 45556777777775 4999999999999865433 35778899999999 9999999
Q ss_pred HHHHHHHhchhcC--CCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H-HHHHHHHHHHHHH
Q 020060 204 KAYQNAEKDERMK--SNP------DLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T-EEVQMMVNLLDKI 268 (331)
Q Consensus 204 ~~~~~al~~~~~~--~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~-~~l~~~~~~l~~~ 268 (331)
.+..++..+...- ++. -+++.++..+..+|....|.++.+.+.++.-.+.+ . ..++.++...|+.
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~ 262 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDL 262 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccH
Confidence 9999998743111 222 23788999999999999999999999886433222 1 6788999999999
Q ss_pred HHHHHhhhhhhhHHHH
Q 020060 269 ENLLKGHAKTKRVASL 284 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~ 284 (331)
+.|...|+.|......
T Consensus 263 e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 263 ERAFRRYEQAMGTMAS 278 (518)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 9999999888866543
No 180
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=4.9e-07 Score=70.66 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=102.0
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..++..|..|-.+|. ..-|.-.|.+++.+.|+-+.+++.||.-+... |+++.|.+.|+..+++
T Consensus 66 ~l~fERGvlYDSlGL--------~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a---------~~fdaa~eaFds~~EL 128 (297)
T COG4785 66 QLLFERGVLYDSLGL--------RALARNDFSQALAIRPDMPEVFNYLGIYLTQA---------GNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHhcchhhhhhH--------HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhc---------ccchHHHHHhhhHhcc
Confidence 566777888887774 88899999999999999999999999999988 9999999999999996
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
+ |.+.-++.|.|..++.-|+|.-|...+.+-.+-||+++.+ .++-.....+..
T Consensus 129 D--p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP 182 (297)
T COG4785 129 D--PTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDP 182 (297)
T ss_pred C--CcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCH
Confidence 6 9999999999999999999999999999999999999987 666555444433
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.59 E-value=1.6e-05 Score=64.33 Aligned_cols=163 Identities=16% Similarity=0.113 Sum_probs=124.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+..|+.-|...++.|++++|+..|+.+....|.. .+...++.+++..+ ++++|+....+-+.+.|++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--------~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--------EYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHhCCCC
Confidence 47789999999999999999999999999999877 78888999988665 5999999999999999988
Q ss_pred ch---hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----------------HhhHHHHHHHhh
Q 020060 174 GN---SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----------------YFNCATVNKYLE 233 (331)
Q Consensus 174 ~~---~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------------~~~la~~~~~~g 233 (331)
+. +++..|.++... +.....++.-..+|+..|+..+. .-|++.-+ -..+|..|.+.|
T Consensus 105 ~n~dY~~YlkgLs~~~~-i~~~~rDq~~~~~A~~~f~~~i~--ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~ 181 (254)
T COG4105 105 PNADYAYYLKGLSYFFQ-IDDVTRDQSAARAAFAAFKELVQ--RYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRG 181 (254)
T ss_pred CChhHHHHHHHHHHhcc-CCccccCHHHHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 75 566677776543 22222255666788899999987 44665311 356788899999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIENL 271 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~~a 271 (331)
.+..|...++..++..|+.... ..+..++..+|-.++|
T Consensus 182 ~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 182 AYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred ChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHH
Confidence 9999999999999998876553 3334444444444443
No 182
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=2e-06 Score=66.47 Aligned_cols=73 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a 271 (331)
++++.|+..+.++|.++ |.+..++...|.+|..+..|++|+..|++.+..+|....+ ....++--....-.+.
T Consensus 148 ~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 148 RKWESAIEDCSKAIELN--PTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred hhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 55555555555555533 5555555555555555555666666666666666655544 4444433333333333
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.56 E-value=2.5e-07 Score=80.82 Aligned_cols=70 Identities=23% Similarity=0.240 Sum_probs=65.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHH---HHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADA---WLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
..+..+..++++|.+|...|+| ++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry-eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV-KDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3457788999999999999998 99999999999999999855 9999999999999999999999999974
No 184
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=2.4e-06 Score=66.03 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=83.9
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP-----DLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
.-|+-++.. |+|++|...|..++... |..+ .+|.|.|.++.+++..+.|+..+.++++++|.+.
T Consensus 100 ~EGN~~F~n---------gdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~ 168 (271)
T KOG4234|consen 100 KEGNELFKN---------GDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE 168 (271)
T ss_pred HHHHHhhhc---------ccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH
Confidence 345556666 88888888888888876 5433 3488999999999999999999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhcc
Q 020060 254 AT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSLA 289 (331)
Q Consensus 254 ~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~~ 289 (331)
.+ ...+.++..+.++++|+..|.+.+.+.|.....+
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 98 8889999999999999999998887776655443
No 185
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=1.2e-05 Score=79.94 Aligned_cols=202 Identities=15% Similarity=0.063 Sum_probs=138.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-- 131 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-- 131 (331)
.....+..+|.++...|++ ++|..++.+++..... ....+..+|.++...|++++|...+.+++.....
T Consensus 529 ~~~~~~~~la~~~~~~G~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~ 607 (903)
T PRK04841 529 YALWSLLQQSEILFAQGFL-QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ 607 (903)
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC
Confidence 3455677889999999997 9999999999886221 2334667899999999999999999999876432
Q ss_pred --h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc--hhH-HH----HHHHHHhhhhhcCCCChhhHH
Q 020060 132 --K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG--NSW-YN----LGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 132 --~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~-~~----l~~~~~~~~~~~~~~~~~~~~ 200 (331)
. ..+..++.+....| ++++|...+.++..+.+... ..+ .. ....+... |+.+
T Consensus 608 ~~~~~~~~~~la~~~~~~G--------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~~ 670 (903)
T PRK04841 608 PQQQLQCLAMLAKISLARG--------DLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT---------GDKE 670 (903)
T ss_pred chHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC---------CCHH
Confidence 2 44555777887776 48999999988876533221 111 11 11222223 7778
Q ss_pred HHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH-HHHHHHHHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~-~~l~~~~~~l~~~~ 269 (331)
.|...+....... +... ..+..+|.++...|++++|...+++++...... ... ..++.++...|+..
T Consensus 671 ~A~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 671 AAANWLRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred HHHHHHHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 8877776655311 1111 124678888888889999988888888753221 113 66778888888888
Q ss_pred HHHHhhhhhhhHHH
Q 020060 270 NLLKGHAKTKRVAS 283 (331)
Q Consensus 270 ~a~~~~~~a~~l~~ 283 (331)
+|...+.+|..+..
T Consensus 749 ~A~~~L~~Al~la~ 762 (903)
T PRK04841 749 EAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888876653
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00014 Score=59.07 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
.....-|.+|...|++++|.+...+...+ ++...-..++.++ .+++-|.+.+++..+++.+ .+...
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~l----E~~Al~VqI~lk~--------~r~d~A~~~lk~mq~ided--~tLtQ 174 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGENL----EAAALNVQILLKM--------HRFDLAEKELKKMQQIDED--ATLTQ 174 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccchH----HHHHHHHHHHHHH--------HHHHHHHHHHHHHHccchH--HHHHH
Confidence 34455577889999999999988773221 3333334444444 4688999999988887643 45666
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHH
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEV 258 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l 258 (331)
|+.++...+ ..| +++.+|..+|+..-.. .+..+.....++.++..+|+|++|...++.++..+++++.. .++
T Consensus 175 LA~awv~la-~gg----ek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 175 LAQAWVKLA-TGG----EKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHh-ccc----hhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 777777652 122 6789999999988763 38888889999999999999999999999999999999987 777
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 020060 259 QMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 259 ~~~~~~l~~~~~a~~~~~~ 277 (331)
-.+-..+|+-.++...+..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLS 266 (299)
T ss_pred HHHHHHhCCChHHHHHHHH
Confidence 7777788887777655443
No 187
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.50 E-value=2.6e-05 Score=68.09 Aligned_cols=159 Identities=13% Similarity=0.186 Sum_probs=133.4
Q ss_pred cccccHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchh
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~ 151 (331)
...+. +.+.+.|+.++++-|. .+..|...|....+..+...|.+.+-.|+...|.+......-.+-.++
T Consensus 378 e~ed~-ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL------ 450 (677)
T KOG1915|consen 378 EAEDV-ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQL------ 450 (677)
T ss_pred HhhhH-HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHH------
Confidence 35675 8899999999999885 578899999999999999999999999999999986555555555544
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-HhhHHHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-YFNCATVNK 230 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~la~~~~ 230 (331)
++++.+...|++-++..|.+..+|...|.+-..+ |+.+.|...|+-|+.... -+-|.+ |-..-..-.
T Consensus 451 --~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~L---------gdtdRaRaifelAi~qp~-ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 451 --REFDRCRKLYEKFLEFSPENCYAWSKYAELETSL---------GDTDRARAIFELAISQPA-LDMPELLWKAYIDFEI 518 (677)
T ss_pred --hhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHh---------hhHHHHHHHHHHHhcCcc-cccHHHHHHHhhhhhh
Confidence 4699999999999999999999999999999988 999999999999997431 233433 566666677
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCc
Q 020060 231 YLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..|.++.|...|++.+...+...
T Consensus 519 ~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred hcchHHHHHHHHHHHHHhcccch
Confidence 89999999999999998877655
No 188
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.49 E-value=1.1e-06 Score=73.46 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
....|.-|+.+|.|++|+.||.+++..+|.+ ..+.+.+.+|+.+ +.|..|...+..|+.++.....+|...
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~--------K~FA~AE~DC~~AiaLd~~Y~KAYSRR 171 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ--------KSFAQAEEDCEAAIALDKLYVKAYSRR 171 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH--------HHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 4668999999999999999999999999988 7788899999976 579999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHh
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
|.+-..+ |...+|.+-++.++.+. |.+.++.-
T Consensus 172 ~~AR~~L---------g~~~EAKkD~E~vL~LE--P~~~ELkK 203 (536)
T KOG4648|consen 172 MQARESL---------GNNMEAKKDCETVLALE--PKNIELKK 203 (536)
T ss_pred HHHHHHH---------hhHHHHHHhHHHHHhhC--cccHHHHH
Confidence 9999999 99999999999999965 87766533
No 189
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.48 E-value=7.2e-05 Score=67.69 Aligned_cols=202 Identities=18% Similarity=0.087 Sum_probs=154.7
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC----
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---- 131 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---- 131 (331)
+.....+|...|..|...|+. +.|...|.++.+..-. .+.+|..-|..-....+++.|..+.+++...-..
T Consensus 383 ~Gs~~~Lw~~faklYe~~~~l-~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 383 VGSPGTLWVEFAKLYENNGDL-DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCChhhHHHHHHHHHHhcCcH-HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 344566888999999999996 9999999999987532 3688999999999999999999999999754322
Q ss_pred ----h-----------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 132 ----K-----------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 132 ----~-----------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
. ..|..++...-..| -++.....|.+.+++.--.|....+.|+.+...
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g--------tfestk~vYdriidLriaTPqii~NyAmfLEeh--------- 524 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLG--------TFESTKAVYDRIIDLRIATPQIIINYAMFLEEH--------- 524 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---------
Confidence 0 24555566555555 488889999999998888899999999999887
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH---HHhhcHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN---KYLENYERALSGFEASALKDPSLNAT---EEVQMMVNLLDKIEN 270 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~~---~~l~~~~~~l~~~~~ 270 (331)
.-++++...|++.+.+-..|.-.++|...-..+ +..-..+.|...|++|+...|..... ...+.+....|-...
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 889999999999998755566667765443332 33446899999999999988743332 555566666677777
Q ss_pred HHHhhhhhh
Q 020060 271 LLKGHAKTK 279 (331)
Q Consensus 271 a~~~~~~a~ 279 (331)
|+..|.+|-
T Consensus 605 amsiyerat 613 (835)
T KOG2047|consen 605 AMSIYERAT 613 (835)
T ss_pred HHHHHHHHH
Confidence 777666654
No 190
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=4.7e-05 Score=61.67 Aligned_cols=168 Identities=12% Similarity=0.024 Sum_probs=134.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHh
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSM 145 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~ 145 (331)
....-|.++...++| ++|+...... ...++...-..++.+..+++-|...+++..+++.+ ..+..++..+..+
T Consensus 110 ~~l~aa~i~~~~~~~-deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided-~tLtQLA~awv~l 182 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDF-DEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED-ATLTQLAQAWVKL 182 (299)
T ss_pred HHHHhhHHhhcCCCh-HHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHH
Confidence 344556788888998 9998877663 34566666778889999999999999999888765 4555666666655
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
.. -...+.+|.-+|++.-+..|..+...+..+.+++.+ |+|++|...++.++... +.+|+.+.|+
T Consensus 183 a~----ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~---------~~~eeAe~lL~eaL~kd--~~dpetL~Nl 247 (299)
T KOG3081|consen 183 AT----GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL---------GRYEEAESLLEEALDKD--AKDPETLANL 247 (299)
T ss_pred hc----cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh---------cCHHHHHHHHHHHHhcc--CCCHHHHHHH
Confidence 22 124588999999999988888889999999999999 99999999999999954 9999999999
Q ss_pred HHHHHHhhcHHHHH-HHHHHHHhcCCCCcHH
Q 020060 226 ATVNKYLENYERAL-SGFEASALKDPSLNAT 255 (331)
Q Consensus 226 a~~~~~~g~~~~A~-~~~~~al~~~~~~~~~ 255 (331)
-.+-...|...++. ++..+....+|.++..
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 99999999886665 4566666778888754
No 191
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=0.00018 Score=63.08 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=143.1
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..-.-+.+|...+.......+. ..|...+-.|+...|.+. .+...-.+-.++++++.....|++-++..|.+ .+|..
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l-~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNL-TGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred ccchHHHHHHHHHHHHHHHccc-HHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 4456788899999999999996 999999999999999864 44445556678899999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
.|..-..+| +.+.|...|.-|+.....+..-..--+.+-+.. ..|.++.|...|++.+... +.
T Consensus 477 yaElE~~Lg--------dtdRaRaifelAi~qp~ldmpellwkaYIdFEi-------~~~E~ekaR~LYerlL~rt--~h 539 (677)
T KOG1915|consen 477 YAELETSLG--------DTDRARAIFELAISQPALDMPELLWKAYIDFEI-------EEGEFEKARALYERLLDRT--QH 539 (677)
T ss_pred HHHHHHHhh--------hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhh-------hcchHHHHHHHHHHHHHhc--cc
Confidence 999999887 599999999999876543333222222222222 3399999999999999743 44
Q ss_pred ChhHHhhHHHHHH-----Hhh-----------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 218 NPDLYFNCATVNK-----YLE-----------NYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 218 ~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
. .+|...|..-. ..+ ....|...|++|.....+.........++....+++...
T Consensus 540 ~-kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~ 609 (677)
T KOG1915|consen 540 V-KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETF 609 (677)
T ss_pred c-hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhc
Confidence 4 37777776655 344 677889999999887665554444444444555555444
No 192
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.44 E-value=5.6e-06 Score=59.42 Aligned_cols=101 Identities=21% Similarity=0.164 Sum_probs=87.1
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQL 138 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l 138 (331)
...+-..|..+...|+. +.|++.|.+++.+.|..+.+|.+.+..+.-.|+.++|+.-+++++++.... .++...
T Consensus 43 S~~LEl~~valaE~g~L-d~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDL-DGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHHHHHHHHHHhccch-HHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 34455678888889996 999999999999999999999999999999999999999999999997544 678889
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
|.+|..+| +-+.|...|+.+-++....
T Consensus 122 g~lyRl~g--------~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 122 GLLYRLLG--------NDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHhC--------chHHHHHhHHHHHHhCCHH
Confidence 99999887 4788888888887765543
No 193
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=5.1e-05 Score=61.41 Aligned_cols=147 Identities=18% Similarity=0.170 Sum_probs=113.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC----CCh-HHHhh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----PNK-KILCQ 137 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~-~~~~~ 137 (331)
..+.+.+..++.-.|.| .-....+.+.++.+ |..+.....+|.+-++.||.+.|..+|+++-+.. .-. .....
T Consensus 177 ~~Vmy~~~~~llG~kEy-~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~ 255 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEY-VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVL 255 (366)
T ss_pred HHHHHHHHHHHhcchhh-hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHH
Confidence 44566778888889998 99999999999988 5678888999999999999999999999654332 211 22233
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
.......+|. +++..|...+.+++..+|.++.+.++.+.|++.+ |+..+|++..+.++... |.
T Consensus 256 ~n~a~i~lg~------nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYl---------g~l~DAiK~~e~~~~~~--P~ 318 (366)
T KOG2796|consen 256 MNSAFLHLGQ------NNFAEAHRFFTEILRMDPRNAVANNNKALCLLYL---------GKLKDALKQLEAMVQQD--PR 318 (366)
T ss_pred hhhhhheecc------cchHHHHHHHhhccccCCCchhhhchHHHHHHHH---------HHHHHHHHHHHHHhccC--Cc
Confidence 3333333443 6799999999999999999999999999999988 99999999999999743 54
Q ss_pred Ch---hHHhhHHHH
Q 020060 218 NP---DLYFNCATV 228 (331)
Q Consensus 218 ~~---~~~~~la~~ 228 (331)
.. .+.+|+-.+
T Consensus 319 ~~l~es~~~nL~tm 332 (366)
T KOG2796|consen 319 HYLHESVLFNLTTM 332 (366)
T ss_pred cchhhhHHHHHHHH
Confidence 32 334444443
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.43 E-value=9.8e-06 Score=59.91 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=89.0
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
..++.-|...+..| +|.+|++.|+......|.. ..+...++.+|... +++++|+..+++-
T Consensus 11 ~~ly~~a~~~l~~~--------~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~---------~~y~~A~a~~~rF 73 (142)
T PF13512_consen 11 QELYQEAQEALQKG--------NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ---------GDYEEAIAAYDRF 73 (142)
T ss_pred HHHHHHHHHHHHhC--------CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc---------cCHHHHHHHHHHH
Confidence 56677777777554 6999999999999988764 46788999999988 9999999999999
Q ss_pred HhchhcCCChhH---HhhHHHHHHHhhc---------------HHHHHHHHHHHHhcCCCCcHH
Q 020060 210 EKDERMKSNPDL---YFNCATVNKYLEN---------------YERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 210 l~~~~~~~~~~~---~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~~~~~ 255 (331)
+++. |.++.+ ++..|.+++.+.. ..+|...|++.+...|++..+
T Consensus 74 irLh--P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 74 IRLH--PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhC--CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 9965 888755 8999999999877 889999999999999998764
No 195
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.41 E-value=6.5e-06 Score=67.22 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--- 173 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--- 173 (331)
-.|+.|.-++..|+|..|...|..-++..|+. .+++.||.+++.+| +++.|...|..+++..|++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHHHHHHHHHHhCCCCCCC
Confidence 37899999999999999999999999999988 89999999999887 5999999999999987765
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
|++++.+|.+...+ |+.++|...|+++++ .-|+.+.+.
T Consensus 215 pdallKlg~~~~~l---------~~~d~A~atl~qv~k--~YP~t~aA~ 252 (262)
T COG1729 215 PDALLKLGVSLGRL---------GNTDEACATLQQVIK--RYPGTDAAK 252 (262)
T ss_pred hHHHHHHHHHHHHh---------cCHHHHHHHHHHHHH--HCCCCHHHH
Confidence 67899999999999 999999999999998 458877653
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.31 E-value=9.4e-05 Score=56.79 Aligned_cols=145 Identities=13% Similarity=0.086 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChh
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK-LNPSLADAWLCLGSCIWKKGDLP 116 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~ 116 (331)
-++.+.++.+-++..+ ...-.+.+|..+...|++ .+|..+|++++. +...++..+..++...+..+++.
T Consensus 72 P~R~~Rea~~~~~~Ap---------Tvqnr~rLa~al~elGr~-~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A 141 (251)
T COG4700 72 PERHLREATEELAIAP---------TVQNRYRLANALAELGRY-HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFA 141 (251)
T ss_pred hhHHHHHHHHHHhhch---------hHHHHHHHHHHHHHhhhh-hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHH
Confidence 4566666666666544 234466789999999998 999999999987 56778999999999999999999
Q ss_pred HHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 117 AAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
.|...+++..+.+|.. +....+|.++...| .+.+|...|+.++...|. +.+....+..+..+
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g--------~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~q------ 206 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG--------KYADAESAFEVAISYYPG-PQARIYYAEMLAKQ------ 206 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC--------CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHh------
Confidence 9999999999999876 67778899999887 489999999999998875 45556666666666
Q ss_pred CChhhHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al 210 (331)
|+..+|..-+....
T Consensus 207 ---gr~~ea~aq~~~v~ 220 (251)
T COG4700 207 ---GRLREANAQYVAVV 220 (251)
T ss_pred ---cchhHHHHHHHHHH
Confidence 76666655554443
No 197
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.4e-06 Score=67.81 Aligned_cols=96 Identities=23% Similarity=0.204 Sum_probs=86.4
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
.-+-.-|+.++....| ..|+.+|.++|.++|..+..|.+.+.||++..+++.+..-.+++++++|+. ..++.+|....
T Consensus 11 ~qlkE~gnk~f~~k~y-~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRY-DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHhccccccchhhh-chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 3345668888888898 999999999999999999999999999999999999999999999999998 88999999888
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.. +.|++|+.++.++..+
T Consensus 90 ~s--------~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QS--------KGYDEAIKVLQRAYSL 107 (284)
T ss_pred hh--------ccccHHHHHHHHHHHH
Confidence 55 4599999999999654
No 198
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=8.3e-05 Score=72.71 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=143.4
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-CCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL-NPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKI 134 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 134 (331)
.|..+..|...-..+...++. ++|.+.+++|+.. ++.. -..|..+-++...-|.-+.-.+.|++|.+.......
T Consensus 1454 sPNSSi~WI~YMaf~LelsEi-ekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEI-EKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhh-HHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 344555666666667777885 8888888888874 3322 334554444444556666777788888777655567
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
+..|..+|..-+ .+++|.++++..++...+....|...+..++.. .+-+.|...+.+|++.
T Consensus 1533 ~~~L~~iy~k~e--------k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~---------ne~~aa~~lL~rAL~~-- 1593 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSE--------KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQ---------NEAEAARELLKRALKS-- 1593 (1710)
T ss_pred HHHHHHHHHHhh--------cchhHHHHHHHHHHHhcchhhHHHHHHHHHhcc---------cHHHHHHHHHHHHHhh--
Confidence 777777777554 588889999888888877888898888888877 7778888888888883
Q ss_pred cCC--ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 215 MKS--NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 215 ~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
.|. +.......|.+-++.|+.+.+...|+-.+.-+|.-.+. .-+.......+........|+++..
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 366 66667788888888899999888898888888876665 5555555555555555555555543
No 199
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.24 E-value=7.8e-06 Score=58.71 Aligned_cols=91 Identities=14% Similarity=0.142 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC--hhHHhhHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN--PDLYFNCATVNKY 231 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~ 231 (331)
++.+.|++.|.+++.+.|..+.+|++.+.++... |+.++|+.-+++++++...... ..++...|.+|..
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq---------~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQ---------GDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHc---------CChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 5699999999999999999999999999999988 9999999999999985311111 2448899999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCc
Q 020060 232 LENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+|+-+.|...|+.+-++.....
T Consensus 128 ~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred hCchHHHHHhHHHHHHhCCHHH
Confidence 9999999999999998877644
No 200
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.24 E-value=1.1e-06 Score=48.28 Aligned_cols=33 Identities=33% Similarity=0.452 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
No 201
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.00023 Score=57.06 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=123.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+....+..+..-+..|....+| ++|..++.++.+-..++ +.++-..|.+......+.++..+|+++..+...+
T Consensus 26 d~dgaas~yekAAvafRnAk~f-eKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKF-EKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4445666777778888889998 99999999999765443 3456667777888899999999999998775333
Q ss_pred -------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 133 -------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG------NSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++-.-|.+.-. .+.++|+..|++++.+-.... +.+...+.++... .++
T Consensus 105 GspdtAAmaleKAak~len---------v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl---------~kf 166 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALEN---------VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL---------EKF 166 (308)
T ss_pred CCcchHHHHHHHHHHHhhc---------CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh---------HHh
Confidence 334444444433 358999999999987644332 3455677888888 899
Q ss_pred HHHHHHHHHHHhc----hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 200 LQSLKAYQNAEKD----ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 200 ~~A~~~~~~al~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
.+|-..+.+-... ...+.....+...-.+|....+|..|..+|+..-++..
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 9998888775531 11222233455666677788899999999999877643
No 202
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.19 E-value=4.2e-06 Score=46.10 Aligned_cols=34 Identities=29% Similarity=0.534 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.+|+++|.+|...|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888888888888888888888888888864
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.17 E-value=5e-05 Score=64.43 Aligned_cols=135 Identities=9% Similarity=0.098 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
+|..+.....+.+..+.|..+|.++.+..+.. .+|...|.+.+..+ ++.+.|..+|+.+++..|.++..|..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~-------~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN-------KDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC-------S-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45555566666666777777777776444433 66666666655544 24555777777777777777777766
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
....+... ++.+.|...|++++..- +... .+|......-...|+.+...+..+++.+..|+..
T Consensus 76 Y~~~l~~~---------~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 76 YLDFLIKL---------NDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHT---------T-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHh---------CcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 66666666 67777777777777532 3322 4566666666666777777777777776666643
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=4e-06 Score=49.25 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGS 107 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 107 (331)
+++.+|..|...|++ ++|+..|+++++.+|+++.+|..+|.
T Consensus 3 ~~~~la~~~~~~G~~-~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQP-DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 455566666666664 66666666666666666666665553
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=6.7e-05 Score=60.74 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC----CC--C
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----DV--K 172 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p--~ 172 (331)
+.+.+..++...|.|.-++..+.++++.+|.. .....+|.+.++.| +.+.|..+|++.-+. +. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G--------D~k~a~~yf~~vek~~~kL~~~q~ 250 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG--------DIKTAEKYFQDVEKVTQKLDGLQG 250 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHHHhhhhccch
Confidence 45778888999999999999999999998665 45556999999887 478888888754432 21 2
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
...+..+.+.++... +++..|...|.+++..+ +.++.+-++.|.|...+|+...|++.++.++...|..
T Consensus 251 ~~~V~~n~a~i~lg~---------nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQ---------NNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hHHHHhhhhhheecc---------cchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 233455566666665 89999999999999954 9999999999999999999999999999999999986
Q ss_pred cH
Q 020060 253 NA 254 (331)
Q Consensus 253 ~~ 254 (331)
..
T Consensus 320 ~l 321 (366)
T KOG2796|consen 320 YL 321 (366)
T ss_pred ch
Confidence 54
No 206
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.15 E-value=4.8e-06 Score=48.93 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
+.++..+|..|...|++++|+..|+++++.+|++ .++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999 88887775
No 207
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.14 E-value=6.7e-06 Score=71.90 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=98.4
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhc
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMA 146 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g 146 (331)
-..+...+..++| +.|+..|.++|+++|+.+..+-+.+..+...+++..|+.-+.++++.+|.. .+++..|.+...++
T Consensus 8 k~ean~~l~~~~f-d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 8 KNEANEALKDKVF-DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhHHhhhcccchH-HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 3456667778898 999999999999999999999999999999999999999999999999998 99999999999886
Q ss_pred cCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 147 QGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 147 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
.+.+|+..|+....+.|+.+.+...+..|-.
T Consensus 87 --------~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 87 --------EFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred --------HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 5999999999999999999988777666544
No 208
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.12 E-value=4.6e-06 Score=45.94 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.6
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3579999999999999999999999999999974
No 209
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.12 E-value=0.00043 Score=67.98 Aligned_cols=197 Identities=11% Similarity=0.024 Sum_probs=156.6
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 34 KVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 34 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
..+++++.-.-|.+.|..+.-. .....-.+|..+=+....-|. .+.-.+.|++|.+.... ...+..|..+|...+
T Consensus 1470 elsEiekAR~iaerAL~tIN~R---EeeEKLNiWiA~lNlEn~yG~-eesl~kVFeRAcqycd~-~~V~~~L~~iy~k~e 1544 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAERALKTINFR---EEEEKLNIWIAYLNLENAYGT-EESLKKVFERACQYCDA-YTVHLKLLGIYEKSE 1544 (1710)
T ss_pred hhhhhHHHHHHHHHHhhhCCcc---hhHHHHHHHHHHHhHHHhhCc-HHHHHHHHHHHHHhcch-HHHHHHHHHHHHHhh
Confidence 3445666666677777776422 233455555555555555565 37788899999887543 457888999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhh
Q 020060 114 DLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~ 190 (331)
++++|.++|+..++..... ..|..++..++... +-+.|...+.+|+.--|. +.......+.+-+..
T Consensus 1545 k~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--------e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~--- 1613 (1710)
T KOG1070|consen 1545 KNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN--------EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY--- 1613 (1710)
T ss_pred cchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc--------HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc---
Confidence 9999999999999998855 89999999998664 478899999999999998 677777788888877
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|+.+.+...|+-.+. ..|...++|.-+...-.+.|+.+-+...|++++.+.=.-..
T Consensus 1614 ------GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1614 ------GDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred ------CCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 999999999999998 45999999999999999999999999999999987654433
No 210
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.00078 Score=63.40 Aligned_cols=100 Identities=19% Similarity=0.089 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
..+.+...-+++++.|. ..-+....|..+..+|++ ++|..+++..-...+++...+..+-.||...|++++
T Consensus 25 fkkal~~~~kllkk~Pn--------~~~a~vLkaLsl~r~gk~-~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPN--------ALYAKVLKALSLFRLGKG-DEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHCCC--------cHHHHHHHHHHHHHhcCc-hhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 34555555556666553 334455678888999997 999988888777888888899999999999999999
Q ss_pred HHHHHHHHHhcCCChHHHhhHHHHHHHhc
Q 020060 118 AKNCFNLALSKGPNKKILCQLSMLERSMA 146 (331)
Q Consensus 118 A~~~~~~al~~~~~~~~~~~l~~~~~~~g 146 (331)
|..+|++++..+|+...+..+-.++.+.+
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHH
Confidence 99999999999999766666666666443
No 211
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.08 E-value=0.0017 Score=59.22 Aligned_cols=171 Identities=15% Similarity=0.176 Sum_probs=131.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-CCC-----cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL-NPS-----LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--- 132 (331)
....-|.....+ ..|+. .+-+..|.+|+.. +|. ....|..+|..|...|+.+.|...|+++.+..=..
T Consensus 347 ~nV~eW~kRV~l--~e~~~-~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 347 HNVEEWHKRVKL--YEGNA-AEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred ccHHHHHhhhhh--hcCCh-HHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 444445444433 34664 7788889888863 554 35789999999999999999999999999875322
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC------------------CchhHHHHHHHHHhhhhhcC
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK------------------DGNSWYNLGNACLTSFFVTG 192 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~ 192 (331)
.+|+..|..-. .+++++.|+++.++|...-.. +..+|..++......
T Consensus 424 La~vw~~waemEl--------rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~----- 490 (835)
T KOG2047|consen 424 LAEVWCAWAEMEL--------RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESL----- 490 (835)
T ss_pred HHHHHHHHHHHHH--------hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHh-----
Confidence 56666665544 446799999999999865221 234566777777777
Q ss_pred CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 193 SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 193 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|-++.....|++.+.+. --.|..-.|.|..+....-+++|.+.|++.+.+.+=...
T Consensus 491 ----gtfestk~vYdriidLr--iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 491 ----GTFESTKAVYDRIIDLR--IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred ----ccHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 88888999999999866 888999999999999999999999999999998765433
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.08 E-value=9e-06 Score=44.71 Aligned_cols=34 Identities=35% Similarity=0.656 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.+|+.+|.+++..|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567778888888888888888888888887764
No 213
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.06 E-value=9.7e-06 Score=44.58 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=30.8
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+.+++.+|.++..+|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678999999999999999999999999999985
No 214
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=2.2e-05 Score=62.45 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh
Q 020060 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL 232 (331)
Q Consensus 153 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~ 232 (331)
.++|..|+.+|.+++.++|..+..|.+.+.+++.+ .+++.+.....+++... |+....++.+|.+....
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~---------~~~~~v~~dcrralql~--~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL---------KHWEPVEEDCRRALQLD--PNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh---------hhhhhhhhhHHHHHhcC--hHHHHHHHHHHHHHHhh
Confidence 35799999999999999999999999999999999 99999999999999955 99999999999999999
Q ss_pred hcHHHHHHHHHHHHhc
Q 020060 233 ENYERALSGFEASALK 248 (331)
Q Consensus 233 g~~~~A~~~~~~al~~ 248 (331)
..|++|+..+.++..+
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999999765
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.00026 Score=59.44 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=123.4
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-CCChH----HHhhHHHHHHHhcc
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK-GPNKK----ILCQLSMLERSMAQ 147 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~----~~~~l~~~~~~~g~ 147 (331)
+....|++ .+|-....+.++-.|.+.-++..--..++..|+...-...+++.+-. +++.. ..-.++-.+...|
T Consensus 112 i~~~~g~~-h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g- 189 (491)
T KOG2610|consen 112 ILWGRGKH-HEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG- 189 (491)
T ss_pred Hhhccccc-cHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc-
Confidence 34456776 77888899999999999999988889999999999999999999877 55542 2222555555554
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC--ChhHHhhH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS--NPDLYFNC 225 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~l 225 (331)
-|++|.+..+++++++|.+..+...++.++... +++.++.+...+.-..-.... -..-|...
T Consensus 190 -------~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~---------~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~ 253 (491)
T KOG2610|consen 190 -------IYDDAEKQADRALQINRFDCWASHAKAHVLEMN---------GRHKEGKEFMYKTEDDWRQSWMLASHNYWHT 253 (491)
T ss_pred -------cchhHHHHHHhhccCCCcchHHHHHHHHHHHhc---------chhhhHHHHHHhcccchhhhhHHHhhhhHHH
Confidence 599999999999999999998888899888877 999999999987754221011 01227788
Q ss_pred HHHHHHhhcHHHHHHHHHHHHh
Q 020060 226 ATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~ 247 (331)
|.++...+.|+.|+..|.+-+-
T Consensus 254 Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHhhhcccchhHHHHHHHHHHH
Confidence 9999999999999999987653
No 216
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.02 E-value=0.00027 Score=62.51 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=113.8
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh------------------------
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK------------------------ 132 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------------------ 132 (331)
..+. +.-++.-++|++++|+.+.+|..||.= ...-..+|..+|+++++.....
T Consensus 181 ERnp-~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 181 ERNP-QARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred cCCH-HHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 4453 788999999999999999999988863 2233566666666666443111
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
.+...+|.+.+++| +.++|++.+++.++.+|. +..++.+|..+++.+ +.|.++...+.+
T Consensus 258 ~~y~KrRLAmCarklG--------r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel---------q~Yad~q~lL~k 320 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLG--------RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL---------QAYADVQALLAK 320 (539)
T ss_pred hhhhHHHHHHHHHHhC--------ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc---------CCHHHHHHHHHH
Confidence 13456888999887 599999999999988775 456888999999988 999998888877
Q ss_pred HHhchhcCCChhHHhhHHHHHHH-hhc---------------HHHHHHHHHHHHhcCCCCcH
Q 020060 209 AEKDERMKSNPDLYFNCATVNKY-LEN---------------YERALSGFEASALKDPSLNA 254 (331)
Q Consensus 209 al~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~ 254 (331)
--.. ..|..+...+.-|....+ .++ -..|.+.+.+|++.+|.-+.
T Consensus 321 YdDi-~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 321 YDDI-SLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred hccc-cCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 5321 246677777777665433 121 23477889999999998664
No 217
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.01 E-value=0.00065 Score=63.90 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=89.5
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
..++| .+|.....+.++..|+..-+....|.++.+.|+.++|..+++..-...+++ ..+.-+..+|..++
T Consensus 21 d~~qf-kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~-------- 91 (932)
T KOG2053|consen 21 DSSQF-KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG-------- 91 (932)
T ss_pred hhHHH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--------
Confidence 45787 999999999999999999999999999999999999998888777666766 67777889999776
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
++++|..+|++++..+|+ ......+-++|.+.
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~ 123 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVRE 123 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHH
Confidence 599999999999999999 77777777777776
No 218
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.00 E-value=2.5e-05 Score=68.40 Aligned_cols=108 Identities=17% Similarity=0.139 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE 233 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 233 (331)
+.|+.|+..|.+|++++|+++..+-+.+.+++.. +++..|+.-+.++++.. |....+|+..|.+...++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~---------e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKV---------ESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheee---------chhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 5799999999999999999999999999999988 99999999999999966 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHH-HHHHHHH--HHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNAT-EEVQMMV--NLLDKIENLL 272 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~-~~l~~~~--~~l~~~~~a~ 272 (331)
.+.+|+..|+....+.|+.+.+ ..+..+- ....+++.++
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai 128 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAI 128 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999986 4444443 3333444444
No 219
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.98 E-value=4e-06 Score=46.02 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 162 HAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 162 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
+|+++++++|+++.+|+++|.+|... |++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~---------g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQ---------GDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHC---------cCHHhhc
Confidence 47899999999999999999999998 9999986
No 220
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.00081 Score=55.70 Aligned_cols=147 Identities=16% Similarity=0.156 Sum_probs=95.0
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHH--HHHh
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSML--ERSM 145 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~--~~~~ 145 (331)
+..+.-....|++ .+|...|..++...|++.++...++.||...|+.+.|...+...-.-..........+.+ +.+.
T Consensus 138 ~~~~~~~~~~e~~-~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 138 LAEAKELIEAEDF-GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHhhhhhhccch-hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3455667778897 899999999999999999999999999999999999888877643333332222111111 1111
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
. ...+ ...+.+.+..+|++..+-+.++..+... |+.+.|++.+-..++.+..-.+..+.-.+
T Consensus 217 a--------~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~---------g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 217 A--------ATPE-IQDLQRRLAADPDDVEAALALADQLHLV---------GRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred h--------cCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 1 1111 2334455566777777778888887777 78888887777777654444455554444
Q ss_pred HHHHHHhh
Q 020060 226 ATVNKYLE 233 (331)
Q Consensus 226 a~~~~~~g 233 (331)
-.++...|
T Consensus 279 le~f~~~g 286 (304)
T COG3118 279 LELFEAFG 286 (304)
T ss_pred HHHHHhcC
Confidence 44444444
No 221
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.90 E-value=0.0098 Score=51.90 Aligned_cols=179 Identities=11% Similarity=0.073 Sum_probs=115.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH---hCChhHHHHHHHHHHhcCCCh--HH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPSLADAWLCLGSCIWK---KGDLPAAKNCFNLALSKGPNK--KI 134 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~--~~ 134 (331)
+.+...+=..|....+| +.-+.+.+..-.+ -++.+.+.+..|.++.+ .|+.++|+..+..++...... +.
T Consensus 141 ~div~~lllSyRdiqdy-damI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDY-DAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhH-HHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 34445555678899998 7666666655444 34456777888999888 899999999999966554433 88
Q ss_pred HhhHHHHHHHhccCc-hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh-HHHHHH------HH
Q 020060 135 LCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK-LLQSLK------AY 206 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~------~~ 206 (331)
+..+|.+|..+-... .......++|+..|.++.+++|+.... .|++.++... |. ++...+ .+
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~---------g~~~~~~~el~~i~~~l 289 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLA---------GHDFETSEELRKIGVKL 289 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHc---------CCcccchHHHHHHHHHH
Confidence 889999998763321 112234899999999999999755333 3444444433 32 221111 11
Q ss_pred HHHH-hchhcCCChhH--HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 207 QNAE-KDERMKSNPDL--YFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 207 ~~al-~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
...+ +........+. +..++.+..-.|++++|..++++++.+.|..-
T Consensus 290 ~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 290 SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 1111 11111112222 45667777889999999999999999976643
No 222
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.0029 Score=59.42 Aligned_cols=214 Identities=13% Similarity=0.084 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHH----------hcCCC----------
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV----------KLNPS---------- 97 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al----------~~~p~---------- 97 (331)
.+..+.+|+++-+... ...--..|++.+..+...++. +.|+++|+++- .-+|.
T Consensus 838 s~g~w~eA~eiAE~~D------RiHLr~Tyy~yA~~Lear~Di-~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~ 910 (1416)
T KOG3617|consen 838 SQGMWSEAFEIAETKD------RIHLRNTYYNYAKYLEARRDI-EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKR 910 (1416)
T ss_pred hcccHHHHHHHHhhcc------ceehhhhHHHHHHHHHhhccH-HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhcc
Confidence 3456677777666533 223445788888888889995 99999998742 22332
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
++..|..-|......|+.+.|+.+|..+-. |+.+..+..-+| +.++|-...++ ..+..+.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-------~fs~VrI~C~qG--------k~~kAa~iA~e-----sgd~AAc 970 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD-------YFSMVRIKCIQG--------KTDKAARIAEE-----SGDKAAC 970 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh-------hhhheeeEeecc--------CchHHHHHHHh-----cccHHHH
Confidence 345666778888888999999999988732 333333333333 24444444332 2344455
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhH------------HhhHHH------------
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDL------------YFNCAT------------ 227 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~------------~~~la~------------ 227 (331)
+.||..|... |++.+|+..|.++-. +....+-.+- ....|.
T Consensus 971 YhlaR~YEn~---------g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~A 1041 (1416)
T KOG3617|consen 971 YHLARMYEND---------GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKA 1041 (1416)
T ss_pred HHHHHHhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHH
Confidence 6666666655 666666666655432 1100000000 111122
Q ss_pred --HHHHhhcHHHHHHHHHH----------HHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 228 --VNKYLENYERALSGFEA----------SALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 228 --~~~~~g~~~~A~~~~~~----------al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
.|.+.|.+.+|++.-=+ +-.++|+... . ...+..+....++++|+.....++++...++-
T Consensus 1042 VmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Alql 1115 (1416)
T KOG3617|consen 1042 VMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQL 1115 (1416)
T ss_pred HHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344444444332100 1124555444 3 77778889999999999777777776655443
No 223
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.86 E-value=0.00059 Score=62.23 Aligned_cols=163 Identities=14% Similarity=0.063 Sum_probs=116.9
Q ss_pred HhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccC--chh--HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQG--SEN--QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~--~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
-.||-+.++..+.++.+ .++- ..+..+..+.+..+.. ... .....+.|.+.+....+..|+.+-..+..|.++.
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45899999999999977 3332 3333322222211110 000 2245788999999999999999999999999999
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhch-hcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--HHHHHH
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMK-SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--EEVQMM 261 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~ 261 (331)
.. |+.++|++.|++++... ..+ -..-.++.+|.++..+++|++|..+|.+..+.+.-.... ...|.+
T Consensus 279 ~~---------g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 279 LK---------GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred Hh---------cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 88 99999999999988521 111 123448999999999999999999999999866554443 778888
Q ss_pred HHHHHHH-------HHHHHhhhhhhhHHH
Q 020060 262 VNLLDKI-------ENLLKGHAKTKRVAS 283 (331)
Q Consensus 262 ~~~l~~~-------~~a~~~~~~a~~l~~ 283 (331)
+..+++. ++|.+.+.++..+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999988 555555555554443
No 224
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.0003 Score=58.91 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=91.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K 133 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~ 133 (331)
.+...+.-+-.-|+-|+...+| ..|+.+|.++|+..-.+ +..|.+.|.+....|+|..|+.-..+++.++|++ .
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kry-k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K 154 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRY-KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK 154 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhH-HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 4556777888899999999999 99999999999975433 5678899999999999999999999999999999 8
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+++.-+.++..+ +++++|+..++..++++..
T Consensus 155 a~~R~Akc~~eL--------e~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 155 AYIRGAKCLLEL--------ERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhHHHHHH--------HHHHHHHHHHhhhhhhhHH
Confidence 999999999977 4789999999888776644
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.79 E-value=0.001 Score=56.50 Aligned_cols=129 Identities=13% Similarity=0.058 Sum_probs=99.0
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-hCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK-KGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
+|..+.+.....+.. +.|...|.+|.+..+....+|...|.+-+. .++.+.|...|+++++..|.+ ..|......+.
T Consensus 3 v~i~~m~~~~r~~g~-~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGI-EAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCh-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 455666667777775 999999999997767778899999999666 566777999999999999998 78888888888
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.++ +.+.|..+|++++..-|... .+|......-... |+.+.......++...
T Consensus 82 ~~~--------d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~---------Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLN--------DINNARALFERAISSLPKEKQSKKIWKKFIEFESKY---------GDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT---------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHH---------S-HHHHHHHHHHHHHH
T ss_pred HhC--------cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Confidence 775 58999999999998866554 4666666655555 8888888888888874
No 226
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0046 Score=52.06 Aligned_cols=96 Identities=9% Similarity=0.122 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
+.-+..-|.-|+..++|..|+.+|.++++..-.+ ..+.+.+.+...+| +|..|+..+.+++.++|++
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~--------NyRs~l~Dcs~al~~~P~h 152 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG--------NYRSALNDCSAALKLKPTH 152 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH--------HHHHHHHHHHHHHhcCcch
Confidence 4556677999999999999999999999875433 56778888888775 6999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
..+++.-+.|++.+ .++.+|+.+++..+.
T Consensus 153 ~Ka~~R~Akc~~eL---------e~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 153 LKAYIRGAKCLLEL---------ERFAEAVNWCEEGLQ 181 (390)
T ss_pred hhhhhhhhHHHHHH---------HHHHHHHHHHhhhhh
Confidence 99999999999999 999999999988865
No 227
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0058 Score=48.93 Aligned_cols=145 Identities=16% Similarity=0.172 Sum_probs=91.6
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC----CCh---HHHhhHHHHHHHhccCch
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----PNK---KILCQLSMLERSMAQGSE 150 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~---~~~~~l~~~~~~~g~~~~ 150 (331)
+.| ++|.++|.++-. .|...+++..|-..|.++-.+. ..+ ..+...+.++...
T Consensus 28 ~k~-eeAadl~~~Aan--------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~----- 87 (288)
T KOG1586|consen 28 NKY-EEAAELYERAAN--------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV----- 87 (288)
T ss_pred cch-HHHHHHHHHHHH--------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-----
Confidence 466 888888887643 3333444444444444443221 111 3344445555433
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCchh------HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-hcCCCh---h
Q 020060 151 NQAEIVEESIQHAKEAITLDVKDGNS------WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMKSNP---D 220 (331)
Q Consensus 151 ~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~---~ 220 (331)
+..+|+.++++++++..+-+.. +..+|.+|..- ..++++|+.+|+++-.-- ....+. .
T Consensus 88 ----~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd--------l~d~ekaI~~YE~Aae~yk~ees~ssANK 155 (288)
T KOG1586|consen 88 ----DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD--------LQDFEKAIAHYEQAAEYYKGEESVSSANK 155 (288)
T ss_pred ----ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh--------HHHHHHHHHHHHHHHHHHcchhhhhhHHH
Confidence 4788888888888876654433 34778877642 379999999999988621 001111 3
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+...+.....+++|.+|+..|++.....-+++.
T Consensus 156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 3667777788999999999999999886655554
No 228
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00032 Score=61.73 Aligned_cols=138 Identities=19% Similarity=0.207 Sum_probs=106.3
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH-HhcC------CCh---HHHhhHHHHHH
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA-LSKG------PNK---KILCQLSMLER 143 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~------~~~---~~~~~l~~~~~ 143 (331)
+..+.+. ..+..-.+.++.+..+.+.+....+..++..|++.+|.+.+... +... |.. .+|.++|.+.+
T Consensus 216 llq~~~L-k~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 216 LLQTRNL-KLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHH-HHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 3444453 55666666677777788999999999999999999999988765 2222 222 46778999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcC---------C---------CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITL---------D---------VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA 205 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~---------~---------p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 205 (331)
++| .|.-+..+|.+|++. . ....++.++.|..|+.. |++-.|.++
T Consensus 295 ~~~--------~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~---------grPl~AfqC 357 (696)
T KOG2471|consen 295 QLG--------CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS---------GRPLLAFQC 357 (696)
T ss_pred ehh--------hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc---------CCcHHHHHH
Confidence 886 588888888888851 1 12356788999999988 999999999
Q ss_pred HHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 206 YQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 206 ~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
|.+++. .--.+|..|..+|.+...
T Consensus 358 f~~av~--vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 358 FQKAVH--VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHHHH--HHhcCcHHHHHHHHHHHH
Confidence 999998 448899999999998764
No 229
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0003 Score=56.41 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhH----------HhhHHHHHHHhhcHHHH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDL----------YFNCATVNKYLENYERA 238 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~----------~~~la~~~~~~g~~~~A 238 (331)
.++..-|+-++.. |+|.+|...|..|+. ....|.+++. +.|+..|+...|+|-++
T Consensus 179 ~~l~q~GN~lfk~---------~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yev 249 (329)
T KOG0545|consen 179 PVLHQEGNRLFKL---------GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEV 249 (329)
T ss_pred HHHHHhhhhhhhh---------ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHH
Confidence 4566778888888 999999999998884 2234666543 78999999999999999
Q ss_pred HHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhcccccc
Q 020060 239 LSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVKL 293 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~~~~~~ 293 (331)
+.+....+..+|.+..+ ...+.+....=+..+|...+.+++++.+.+.+.-..++
T Consensus 250 leh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 250 LEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 99999999999999998 99999998888899999999999999988877665544
No 230
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.70 E-value=0.0056 Score=53.35 Aligned_cols=163 Identities=13% Similarity=0.056 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc---ccccHHHHHHHHHH-HHhcCCCcHHHHHHHHHHHHHh---
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV---VPEYRKDAEDHLSK-AVKLNPSLADAWLCLGSCIWKK--- 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~--- 112 (331)
++++..+++.+.+...+.........+-+..|.++.. .|+. ++|+..+.. .....+.+++.+-.+|.+|-..
T Consensus 155 qdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdr-e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDR-EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred hhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCH-HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHH
Confidence 5556666666655532222234455666777888887 8996 999999999 4455677899999999988532
Q ss_pred ------CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh-cC--CCCCchhH--HHHH
Q 020060 113 ------GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI-TL--DVKDGNSW--YNLG 181 (331)
Q Consensus 113 ------g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al-~~--~p~~~~~~--~~l~ 181 (331)
...++|+..|.++.++.|+...-.+++.++...|........ ..+-.-.+...+ +. .......| -.+.
T Consensus 234 s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~e-l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~ 312 (374)
T PF13281_consen 234 SNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEE-LRKIGVKLSSLLGRKGSLEKMQDYWDVATLL 312 (374)
T ss_pred cCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHH-HHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 347899999999999998775556777777766642221111 111111111111 11 11222333 3455
Q ss_pred HHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 182 NACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
.+.... |++++|+..++++.+..
T Consensus 313 Ea~vL~---------~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 313 EASVLA---------GDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHc---------CCHHHHHHHHHHHhhcC
Confidence 666666 99999999999999743
No 231
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.0022 Score=60.16 Aligned_cols=214 Identities=14% Similarity=0.070 Sum_probs=141.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHH------------HHHHHhcCCCcHHHHHHHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDH------------LSKAVKLNPSLADAWLCLGS 107 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~------------~~~al~~~p~~~~~~~~lg~ 107 (331)
..++.|.+.+..+.. -.+|-+++..+....+. +-|.-+ ++++.+ +|+. .-...|.
T Consensus 742 G~MD~AfksI~~IkS---------~~vW~nmA~McVkT~RL-DVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAv 808 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIKS---------DSVWDNMASMCVKTRRL-DVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAV 808 (1416)
T ss_pred ccHHHHHHHHHHHhh---------hHHHHHHHHHhhhhccc-cHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHH
Confidence 566777777776653 24677777777776664 555443 333333 2322 2234466
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 108 CIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+-.++|..++|...|++.-..+ .+-..|...| .+.+|.+..+.--++. -...|++.+.-+...
T Consensus 809 LAieLgMlEeA~~lYr~ckR~D-------LlNKlyQs~g--------~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 809 LAIELGMLEEALILYRQCKRYD-------LLNKLYQSQG--------MWSEAFEIAETKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHhcc--------cHHHHHHHHhhcccee--hhhhHHHHHHHHHhh
Confidence 6678899999999998874432 2333444443 4777777665322221 234677777777766
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHh----------ch--------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc-
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEK----------DE--------RMKSNPDLYFNCATVNKYLENYERALSGFEASALK- 248 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~----------~~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 248 (331)
++.+.|+++|+++-. .. ....++..|...|..+...|+.+.|+.+|..|-..
T Consensus 872 ---------~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 872 ---------RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred ---------ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 889999999987532 00 11345677888899999999999999999888642
Q ss_pred --------------------CCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhccccc
Q 020060 249 --------------------DPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSLAVVK 292 (331)
Q Consensus 249 --------------------~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~~~~~ 292 (331)
...+..+ ..+++.+...|++.+|++-|.+|....+.++--+...
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1223445 8999999999999999999999887766655544433
No 232
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.68 E-value=8e-05 Score=40.82 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 131 (331)
.+|+.+|.+|...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777788888888888888888887777764
No 233
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.0013 Score=52.84 Aligned_cols=104 Identities=18% Similarity=0.149 Sum_probs=85.4
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc--------CCCCCc----------hhHHHHHHHHHhhhhhcCCC
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT--------LDVKDG----------NSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--------~~p~~~----------~~~~~l~~~~~~~~~~~~~~ 194 (331)
.++..-|.-++..| +|.+|...|+.|+. -.|..+ ..+.+.+.|++..
T Consensus 179 ~~l~q~GN~lfk~~--------~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~------- 243 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLG--------RYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK------- 243 (329)
T ss_pred HHHHHhhhhhhhhc--------cHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-------
Confidence 45666777777665 57777777777763 234443 3567888999988
Q ss_pred ChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|+|-++++.....++.. |.|..+|+..|.++...=+..+|...|.+++.++|.....
T Consensus 244 --~e~yevleh~seiL~~~--~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 244 --EEYYEVLEHCSEILRHH--PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred --HHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999954 9999999999999999999999999999999999997654
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.0042 Score=50.07 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch---
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN--- 175 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~--- 175 (331)
+..+..-+.+|...++|++|..++.++.+-...+..|+.-+..+-..+.... ....+.++..+++++..+.-.++.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLak-e~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAK-ELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 3455566788899999999999999999777666555544444333221111 224689999999999876433221
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhc---
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALK--- 248 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 248 (331)
+-..|+.+-..+ ...++++|+..|++++..-...+. .+.+-..+.++.+...|.+|...+.+-...
T Consensus 110 AAmaleKAak~l-------env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~ 182 (308)
T KOG1585|consen 110 AAMALEKAAKAL-------ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK 182 (308)
T ss_pred HHHHHHHHHHHh-------hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence 122222222222 226899999999999974211221 244677888999999999999888776543
Q ss_pred -CCCCcHH-HHHHHHHHHHH--HHHHHHHhhhh
Q 020060 249 -DPSLNAT-EEVQMMVNLLD--KIENLLKGHAK 277 (331)
Q Consensus 249 -~~~~~~~-~~l~~~~~~l~--~~~~a~~~~~~ 277 (331)
+.-+... ..++.++..+- ++..+.+.+..
T Consensus 183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2222222 45555544443 77777665555
No 235
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.63 E-value=8.8e-05 Score=40.65 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=30.1
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+|+.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 568999999999999999999999999999853
No 236
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.63 E-value=0.024 Score=49.03 Aligned_cols=201 Identities=15% Similarity=0.006 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChh
Q 020060 37 KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP 116 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 116 (331)
.++.+++.+.+.++.+.. +|..+...+-.+=.-....|+. +.|+.+-.++-...|..+.++...-...+..|+++
T Consensus 131 l~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~Gar-eaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 131 LLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAR-EAARHYAERAAEKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccH-HHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChH
Confidence 345666667777776664 3333322222221222357886 88999999999999999999988888889999999
Q ss_pred HHHHHHHHHHhcCC--ChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 117 AAKNCFNLALSKGP--NKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 117 ~A~~~~~~al~~~~--~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
.|++......+..- .+.+-...+.++....... -.-+...|.....++.++.|+....-..-+..++..
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~--ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d------- 276 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL--LDADPASARDDALEANKLAPDLVPAAVVAARALFRD------- 276 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhc-------
Confidence 99999877654321 1111111111111110000 001356677777777777777766655555555555
Q ss_pred ChhhHHHHHHHHHHHHhch------------------------------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 195 DHSKLLQSLKAYQNAEKDE------------------------------RMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~------------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
|+.-++-..++.+-+.. ..|++.+.....+......|+|..|..--+.
T Consensus 277 --~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 277 --GNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred --cchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 55555554444444321 2256666666777777777777777777777
Q ss_pred HHhcCCCCc
Q 020060 245 SALKDPSLN 253 (331)
Q Consensus 245 al~~~~~~~ 253 (331)
+....|...
T Consensus 355 a~r~~pres 363 (531)
T COG3898 355 AAREAPRES 363 (531)
T ss_pred HhhhCchhh
Confidence 777777643
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.57 E-value=0.011 Score=55.44 Aligned_cols=150 Identities=22% Similarity=0.189 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-----CChhHHHHHHHHHHh-------cCCChHHHhhHHHHHHHhccCc
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-----GDLPAAKNCFNLALS-------KGPNKKILCQLSMLERSMAQGS 149 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~-------~~~~~~~~~~l~~~~~~~g~~~ 149 (331)
..|..+++.+.+. .+..+...+|.||..- .|.+.|+.+|..+.. .. ...+.+.+|.+|..-....
T Consensus 229 ~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCc
Confidence 5688888887665 5677888899998765 689999999999977 22 1257788999988653211
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH
Q 020060 150 ENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN 229 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 229 (331)
.- +...|+.++.++.... ++.+.+.+|.++..-. ...++..|..+|..|.+ ..+..+.+++|.+|
T Consensus 306 ~~---d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~------~~~d~~~A~~yy~~Aa~----~G~~~A~~~la~~y 370 (552)
T KOG1550|consen 306 KI---DYEKALKLYTKAAELG--NPDAQYLLGVLYETGT------KERDYRRAFEYYSLAAK----AGHILAIYRLALCY 370 (552)
T ss_pred cc---cHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC------ccccHHHHHHHHHHHHH----cCChHHHHHHHHHH
Confidence 11 6889999999988765 6778899999998651 12468899999999987 78999999999998
Q ss_pred HH----hhcHHHHHHHHHHHHhcC
Q 020060 230 KY----LENYERALSGFEASALKD 249 (331)
Q Consensus 230 ~~----~g~~~~A~~~~~~al~~~ 249 (331)
.. ..+...|..+|.++-...
T Consensus 371 ~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 371 ELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HhCCCcCCCHHHHHHHHHHHHHcc
Confidence 84 357999999999999988
No 238
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.55 E-value=0.016 Score=49.55 Aligned_cols=172 Identities=17% Similarity=0.098 Sum_probs=121.3
Q ss_pred HHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCC--hHH
Q 020060 65 TYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPN--KKI 134 (331)
Q Consensus 65 ~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~--~~~ 134 (331)
.....++..|.. ..+. .+|..+|+.+ .....+.+.+.+|.+|.. ..++.+|..+|+++.+.... ...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~-~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~ 150 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDK-TKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALA 150 (292)
T ss_pred HHHHHHHHHHHhccCccccH-HHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHH
Confidence 455556665554 3454 7899999944 445678899999999987 45999999999999988644 234
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
...++..+..-... .....+...|...|.++-... ++.+...+|.+|..- ..-..++.+|+.+|.++...
T Consensus 151 ~~~l~~~~~~g~~~-~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G-----~Gv~~d~~~A~~wy~~Aa~~-- 220 (292)
T COG0790 151 MYRLGLAYLSGLQA-LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKG-----LGVPRDLKKAFRWYKKAAEQ-- 220 (292)
T ss_pred HHHHHHHHHcChhh-hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcC-----CCCCcCHHHHHHHHHHHHHC--
Confidence 67777777653100 002223568999999988765 778889999887643 22346999999999999873
Q ss_pred cCCChhHHhhHHHHHHHhh---------------cHHHHHHHHHHHHhcCCCC
Q 020060 215 MKSNPDLYFNCATVNKYLE---------------NYERALSGFEASALKDPSL 252 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~~~~ 252 (331)
.+...++.++ ++...| +...|..++..+-...+..
T Consensus 221 --g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 221 --GDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred --CCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 3488889999 666555 6666777777666655543
No 239
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.00031 Score=61.79 Aligned_cols=118 Identities=17% Similarity=0.152 Sum_probs=95.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHH-HhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKA-VKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK--- 128 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--- 128 (331)
.+.+..++..+..++..|+| .+|.+.+... +...|. .-.+|.++|.++++.|.|..+..+|.++++.
T Consensus 237 ~~s~~~l~LKsq~eY~~gn~-~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~ 315 (696)
T KOG2471|consen 237 QDSSMALLLKSQLEYAHGNH-PKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCS 315 (696)
T ss_pred CCCcHHHHHHHHHHHHhcch-HHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHH
Confidence 35667888899999999998 8888877653 233333 2346789999999999999999999999951
Q ss_pred ------CCC----------hHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 129 ------GPN----------KKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 129 ------~~~----------~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
.|. ...+++.|..+...| +...|.++|.+++...-.+|..|..++.+++..
T Consensus 316 qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~g--------rPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 316 QLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSG--------RPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHhccCCCCcceehhcccchhhHHhhhHHHHhcC--------CcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 111 168899999999887 599999999999999999999999999998743
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.44 E-value=0.0027 Score=57.95 Aligned_cols=114 Identities=17% Similarity=0.108 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHH
Q 020060 81 RKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
.+.|...+....+..|+.+-..+..|.++...|+.++|+..|++++...... -.++.++.++..+. +
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~--------~ 320 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH--------D 320 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc--------h
Confidence 4789999999999999999999999999999999999999999998543332 46677899888775 6
Q ss_pred HHHHHHHHHHHhcCCCCCchhH-HHHHHHHHhhhhhcCCCChhhH-------HHHHHHHHHHHh
Q 020060 156 VEESIQHAKEAITLDVKDGNSW-YNLGNACLTSFFVTGSWDHSKL-------LQSLKAYQNAEK 211 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~~~~~~~~~~~~~-------~~A~~~~~~al~ 211 (331)
|++|..++.+..+.+..+...| +..|.++... ++. ++|...|.++-.
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l---------~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLML---------GREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh---------ccchhhhhhHHHHHHHHHHHHH
Confidence 9999999999999776655444 4566666666 666 888888888765
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.43 E-value=7e-05 Score=62.85 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE 233 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g 233 (331)
|.+++|++.|..++.++|.....+...+.+++.+ ++...|+.-+..++.++ |+...-|-..|.....+|
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl---------~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKL---------KKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLG 196 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeec---------cCCchhhhhhhhhhccC--cccccccchhhHHHHHhh
Confidence 4699999999999999999999999999999999 99999999999999966 999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLL 272 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~ 272 (331)
++.+|...+..+.+++-+......+..+.-..+...+--
T Consensus 197 ~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~ 235 (377)
T KOG1308|consen 197 NWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHR 235 (377)
T ss_pred chHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhch
Confidence 999999999999998876444355555555444444433
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.39 E-value=0.0073 Score=53.75 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=90.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-------CCC---
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-------LDV--- 171 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-------~~p--- 171 (331)
..+..--++..+...-++.-++|++++|+. .++..++.-... ...+|..+++++++ .+.
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~----------Ti~Eae~l~rqAvkAgE~~lg~s~~~~ 241 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEAS----------TIVEAEELLRQAVKAGEASLGKSQFLQ 241 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccccc----------CHHHHHHHHHHHHHHHHHhhchhhhhh
Confidence 445555677889999999999999999998 787777663221 13444444444443 211
Q ss_pred C-----------C----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHH
Q 020060 172 K-----------D----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYE 236 (331)
Q Consensus 172 ~-----------~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~ 236 (331)
. + ..+-..+|++...+ |+.++|++.++..++....-++..++.++..++..++.|.
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl---------Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKL---------GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHh---------CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 0 0 22345789999988 9999999999999985411235577999999999999999
Q ss_pred HHHHHHHHH
Q 020060 237 RALSGFEAS 245 (331)
Q Consensus 237 ~A~~~~~~a 245 (331)
++...+.+.
T Consensus 313 d~q~lL~kY 321 (539)
T PF04184_consen 313 DVQALLAKY 321 (539)
T ss_pred HHHHHHHHh
Confidence 999998885
No 243
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.046 Score=48.60 Aligned_cols=194 Identities=12% Similarity=-0.008 Sum_probs=127.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCC---cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc---CCC-------cHHHHH
Q 020060 37 KLQNESDLALRLLGSVPPEQRKS---PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL---NPS-------LADAWL 103 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~ 103 (331)
..++.-++++...++.+...... .......+-.+..+-...|++ .+|++-...+... .|. .+..++
T Consensus 293 ~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~-~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~ 371 (629)
T KOG2300|consen 293 KAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDY-VEALEEIVDMKNWCTRFPTPLLLRAHEAQIHM 371 (629)
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhCCchHHHHHhHHHHHH
Confidence 44566677888877776431100 012223344455666678997 8888877766553 454 356778
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCh--H--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-----
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKGPNK--K--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG----- 174 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----- 174 (331)
.+|......+.++.|...|..+.+..... . .-.+++.+|.+.| .+...++-.-.+.|.+.
T Consensus 372 LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~-----------~~ed~y~~ld~i~p~nt~s~ss 440 (629)
T KOG2300|consen 372 LLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIG-----------DAEDLYKALDLIGPLNTNSLSS 440 (629)
T ss_pred HHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhc-----------cHHHHHHHHHhcCCCCCCcchH
Confidence 88988889999999999999999887655 3 3345888888765 22233322223444421
Q ss_pred -----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 175 -----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 175 -----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
.+++..|...+.. +++.+|.....+.++.....+.. -.+..+|.+....|+..++.+..+-+
T Consensus 441 q~l~a~~~~v~glfaf~q---------n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 441 QRLEASILYVYGLFAFKQ---------NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 2334445544444 89999999999999743222222 22678899999999999999999888
Q ss_pred HhcCCC
Q 020060 246 ALKDPS 251 (331)
Q Consensus 246 l~~~~~ 251 (331)
+.+...
T Consensus 512 mqlAkK 517 (629)
T KOG2300|consen 512 MQLAKK 517 (629)
T ss_pred HHHHhc
Confidence 876544
No 244
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.33 E-value=0.043 Score=47.50 Aligned_cols=202 Identities=11% Similarity=0.004 Sum_probs=133.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
..+.++.+-+..-...|+| +.|.+-|+-.+. +|.. .-.+..|-.--...|+.+.|..|-+++....|.- -++...-
T Consensus 118 qepLIhlLeAQaal~eG~~-~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 118 QEPLIHLLEAQAALLEGDY-EDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred chHHHHHHHHHHHHhcCch-HHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 4566777778888889998 999999987765 3432 2223333333356799999999999999999987 4443333
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITL---DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
.....- |+++.|++........ .++.. -...+.++-....+. -.-+...|...-..++++. |
T Consensus 196 e~r~~~--------gdWd~AlkLvd~~~~~~vie~~~a--eR~rAvLLtAkA~s~---ldadp~~Ar~~A~~a~KL~--p 260 (531)
T COG3898 196 EARCAA--------GDWDGALKLVDAQRAAKVIEKDVA--ERSRAVLLTAKAMSL---LDADPASARDDALEANKLA--P 260 (531)
T ss_pred HHHHhc--------CChHHHHHHHHHHHHHHhhchhhH--HHHHHHHHHHHHHHH---hcCChHHHHHHHHHHhhcC--C
Confidence 333333 4699999998776553 22221 111222211110000 1145778888888999855 9
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
+..-.-..-+..++..|+..++-..++.+++..|... ++.+|.....-+.++....++.+|..+
T Consensus 261 dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~----ia~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 261 DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD----IALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH----HHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 9888888889999999999999999999999999854 444444444444455555555555443
No 245
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.30 E-value=0.029 Score=43.84 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..+++++|+..++.++....+. ..+-.+|+.+.... |.+++|+..+..... ....+..-...|.+
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~---------~k~D~AL~~L~t~~~---~~w~~~~~elrGDi 168 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQ---------KKADAALKTLDTIKE---ESWAAIVAELRGDI 168 (207)
T ss_pred hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHhcccc---ccHHHHHHHHhhhH
Confidence 3356889999888888643322 23456788888887 999999888776542 12233446678999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+...|+-++|...|++++..+++...
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCChHH
Confidence 99999999999999999998866543
No 246
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.30 E-value=0.00048 Score=37.27 Aligned_cols=33 Identities=30% Similarity=0.522 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++++.+|.++...|++++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367788888888888888888888888887763
No 247
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.29 E-value=0.00065 Score=36.71 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=30.4
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++++.+|.++...|++++|...|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367899999999999999999999999999974
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.28 E-value=0.0013 Score=59.30 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=78.0
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
......|+...|+.|+.+++-..|.. ..+.+++.++..-| ..-.|-..+.+++.+....|-.++.+|.++
T Consensus 615 lywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~--------~~~da~~~l~q~l~~~~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 615 LYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYG--------LHLDATKLLLQALAINSSEPLTFLSLGNAY 686 (886)
T ss_pred ceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhh--------hhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence 33345688888888888888888766 56777888777655 367788888888888877777888888888
Q ss_pred HhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 185 LTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 185 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
+.+ .+.+.|++.|..+++.. |.++..-..+-.+..
T Consensus 687 l~l---------~~i~~a~~~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 687 LAL---------KNISGALEAFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHH---------hhhHHHHHHHHHHHhcC--CCChhhHHHHHHHHH
Confidence 888 88888888888888854 888777555544433
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.25 E-value=0.00057 Score=37.95 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+|.+||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999996654
No 250
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.22 E-value=0.01 Score=41.82 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=64.4
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh-H---HHhhHHHHHHHhccCchh---HHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK-K---ILCQLSMLERSMAQGSEN---QAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~-~---~~~~l~~~~~~~g~~~~~---~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+.-++..|++-+|++..+..+...+++ . .+..-|.++..++...++ +..-.-.+++++.++..+.|..+..++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 444555566666666666655555444 1 222345555444332111 223366789999999999999998999
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.+|.-+... ..|++++...++++..
T Consensus 83 ~la~~l~s~---------~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 83 ELASQLGSV---------KYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHhhhH---------HHHHHHHHHHHHHhcc
Confidence 999887766 7888999888888863
No 251
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.21 E-value=0.027 Score=49.52 Aligned_cols=146 Identities=17% Similarity=0.136 Sum_probs=101.0
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--------------------------CCh-H---HHhhHHH
Q 020060 91 AVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--------------------------PNK-K---ILCQLSM 140 (331)
Q Consensus 91 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------~~~-~---~~~~l~~ 140 (331)
.+..+|.+.+++..++.++..+|+.+.|.+..++|+-.. +.| . +++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 356789999999999999999999999999988885221 111 1 2223333
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch--h-cC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE--R-MK 216 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~-~~ 216 (331)
.+. +.|-+..|.++.+-.+.++|. +|-.....-..|.-. .++++--+..++...... . ..
T Consensus 112 ~L~--------~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALr--------s~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 112 SLG--------RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALR--------SRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred HHH--------hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHh--------cCCHHHHHHHHHhHhhhhhhhhhh
Confidence 333 445699999999999999998 665544443333322 166666666666544311 0 11
Q ss_pred CChhHHhhHHHHHHHhhcH---------------HHHHHHHHHHHhcCCCC
Q 020060 217 SNPDLYFNCATVNKYLENY---------------ERALSGFEASALKDPSL 252 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~~ 252 (331)
.-|...+..+.+++..++- +.|...+.+|+...|.-
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 2456788899999999888 89999999999876653
No 252
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.20 E-value=0.0028 Score=38.49 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=33.4
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHH
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQ 259 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~ 259 (331)
+.++.+|..++++|+|.+|..+.+.+++++|++.++..+-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4578999999999999999999999999999999874443
No 253
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.18 E-value=0.00031 Score=39.07 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=24.4
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+|.++|.+|..+|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999976543
No 254
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.16 E-value=0.006 Score=55.19 Aligned_cols=134 Identities=10% Similarity=0.168 Sum_probs=103.5
Q ss_pred HHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHhhhhhcCCCChh
Q 020060 120 NCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG--NSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 120 ~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
.....+++..|.+..+..++..|+++. |+..+|+.++..++-..|... .+...+|.++... |
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~-------G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~Ra---------G 263 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIK-------GEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRA---------G 263 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHc-------CChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHc---------c
Confidence 345666777777777777888888764 579999999999998877643 4678899999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENL 271 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a 271 (331)
...+|--.+..|+... +.-..-++.+|.++..++++...+.+|..+.+.+|....+ .....+...+.+...+
T Consensus 264 ~sadA~iILhAA~~dA--~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~k 336 (886)
T KOG4507|consen 264 FSADAAVILHAALDDA--DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQK 336 (886)
T ss_pred cccchhheeehhccCC--ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 8888988888887633 6666669999999999999999999999999999987765 4444444333333333
No 255
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.15 E-value=0.019 Score=41.87 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=64.9
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
..+..+++++++... .+..+..+.+.+++..++........+..+.++..+++.++|+.++.+....++..|++
T Consensus 31 s~~s~f~lAwaLV~S------~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRS------RDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred hHHHHHHHHHHHHcc------cchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 456778899988865 24578889999999999722223355778999999999999999999999999999999
Q ss_pred cHHHHHH
Q 020060 253 NATEEVQ 259 (331)
Q Consensus 253 ~~~~~l~ 259 (331)
.++..+-
T Consensus 105 ~Qa~~Lk 111 (149)
T KOG3364|consen 105 RQALELK 111 (149)
T ss_pred HHHHHHH
Confidence 9764443
No 256
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.04 E-value=0.086 Score=45.09 Aligned_cols=178 Identities=19% Similarity=0.180 Sum_probs=123.9
Q ss_pred hhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhcc
Q 020060 72 KILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQ 147 (331)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~ 147 (331)
......+++ ..|...+.++... .++.+...+|.+|... .+..+|..+|+.+.... ...+.+.+|.++..-.-
T Consensus 49 ~~~~~~~~~-~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g-~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDY-AKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG-LAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccH-HHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc-cHHHHHhHHHHHhcCCC
Confidence 334456676 8888888888763 3347888889888764 56888999999554332 11677788888775311
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCC-chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKD-GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
...+..+|...|+++.+..... ..+...+|.+|..-....+ ...+...|...|.++-. ..++.+.+++|
T Consensus 125 ----v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~--~~~~~~~A~~~~~~aa~----~~~~~a~~~lg 194 (292)
T COG0790 125 ----VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALA--VAYDDKKALYLYRKAAE----LGNPDAQLLLG 194 (292)
T ss_pred ----cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhc--ccHHHHhHHHHHHHHHH----hcCHHHHHHHH
Confidence 1236899999999999875433 3447888888775310000 11244589999999976 55899999999
Q ss_pred HHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 227 TVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 227 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
.+|.. ..++.+|..+|.++-.... ... ..++ ++...|
T Consensus 195 ~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 195 RMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 88865 4589999999999999887 444 6666 555444
No 257
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.071 Score=43.69 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHH-
Q 020060 81 RKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVE- 157 (331)
Q Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~- 157 (331)
...|+.+-..+|.++|.+-.+|...-.+...+ .+..+-++++...++-+|++ .+|...-.+...+|+ ..
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d--------~s~ 130 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD--------PSF 130 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC--------ccc
Confidence 46788888888888888877777766666554 35677778888888888888 777666666655553 33
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH------H
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK------Y 231 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~------~ 231 (331)
.-+++.+.++..+.++..+|...-.+.... +.++.-+.+....++.+ -.|-++|...-.+.. .
T Consensus 131 rELef~~~~l~~DaKNYHaWshRqW~~r~F---------~~~~~EL~y~~~Lle~D--i~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAKNYHAWSHRQWVLRFF---------KDYEDELAYADELLEED--IRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred chHHHHHHHHhccccchhhhHHHHHHHHHH---------hhHHHHHHHHHHHHHHh--hhccchhheeeEEEEeccCCcc
Confidence 556777777777777878888777777766 77777777777777643 444444332211111 1
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
.-..+.-+.+..+.+.+.|++..+ ..+.-++
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l 231 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLL 231 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 122344456666667777777766 4443333
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.02 E-value=0.023 Score=48.09 Aligned_cols=157 Identities=8% Similarity=-0.142 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-CCCCch---h
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-DVKDGN---S 176 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~~~---~ 176 (331)
...-+.+.+..|++.+|...+.+.++-.|++ -++..--.+++.+| +...-...+++.+-. +|+.|- +
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G--------~~~~~k~ai~kIip~wn~dlp~~sYv 177 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNG--------NQIGKKNAIEKIIPKWNADLPCYSYV 177 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhcc--------chhhhhhHHHHhccccCCCCcHHHHH
Confidence 3445566788899999999999999999999 55555556666666 466667777777765 555543 3
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc-HH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN-AT 255 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~ 255 (331)
...++..+... |-|++|.+..+++++++ +.+.-+....+.++...|++.++.+.+.+.-..-...- .+
T Consensus 178 ~GmyaFgL~E~---------g~y~dAEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla 246 (491)
T KOG2610|consen 178 HGMYAFGLEEC---------GIYDDAEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA 246 (491)
T ss_pred HHHHHhhHHHh---------ccchhHHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH
Confidence 33455666666 99999999999999976 99988889999999999999999999877543322111 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhh
Q 020060 256 ----EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 256 ----~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
..-+..+..-+.++.+++.|..
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHH
Confidence 3344455555777777766554
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.00 E-value=0.022 Score=43.08 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=50.1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+...++..+...| ++++|+..+++++..+|.+..+|..+..+|... |+...|+..|++..+
T Consensus 64 ~~~~l~~~~~~~~--------~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~---------g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAG--------DYEEALRLLQRALALDPYDEEAYRLLMRALAAQ---------GRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT---------HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT---------T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC---------cCHHHHHHHHHHHHH
Confidence 4444555666554 699999999999999999999999999999999 999999999998875
No 260
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.05 Score=44.53 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=115.2
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHH
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIV 156 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~ 156 (331)
.+| .++..+|+..+..+...+ .|+.....++.++|.+ .+|...-.++..++ .+.
T Consensus 40 e~f-r~~m~YfRAI~~~~E~S~-----------------RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~-------~dL 94 (318)
T KOG0530|consen 40 EDF-RDVMDYFRAIIAKNEKSP-----------------RALQLTEDAIRLNPANYTVWQYRRVILRHLM-------SDL 94 (318)
T ss_pred hhH-HHHHHHHHHHHhccccCH-----------------HHHHHHHHHHHhCcccchHHHHHHHHHHHhH-------HHH
Confidence 455 677777776666655544 4556666778899999 88887778888776 468
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH-HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 157 EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL-QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
.+-++++.+.++.+|++.++|...-.+.... |++. .-++....++..+ ..+-.+|...-.+...-+.+
T Consensus 95 ~~El~~l~eI~e~npKNYQvWHHRr~ive~l---------~d~s~rELef~~~~l~~D--aKNYHaWshRqW~~r~F~~~ 163 (318)
T KOG0530|consen 95 NKELEYLDEIIEDNPKNYQVWHHRRVIVELL---------GDPSFRELEFTKLMLDDD--AKNYHAWSHRQWVLRFFKDY 163 (318)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHh---------cCcccchHHHHHHHHhcc--ccchhhhHHHHHHHHHHhhH
Confidence 8999999999999999999999999988888 7777 7788888888854 88899999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcH
Q 020060 236 ERALSGFEASALKDPSLNA 254 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~ 254 (331)
+.-+.+..+.++.+-.+..
T Consensus 164 ~~EL~y~~~Lle~Di~NNS 182 (318)
T KOG0530|consen 164 EDELAYADELLEEDIRNNS 182 (318)
T ss_pred HHHHHHHHHHHHHhhhccc
Confidence 9999999999987765443
No 261
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.99 E-value=0.00041 Score=58.36 Aligned_cols=92 Identities=24% Similarity=0.169 Sum_probs=78.2
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCc
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGS 149 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~ 149 (331)
+.-.+..|.+ ++|++.|..++.++|..+..+...|.++..+++...|++-+..+++++|+. ..+-..+.....+|
T Consensus 121 A~eAln~G~~-~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg--- 196 (377)
T KOG1308|consen 121 ASEALNDGEF-DTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLG--- 196 (377)
T ss_pred HHHHhcCcch-hhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhh---
Confidence 3344567887 999999999999999999999999999999999999999999999999998 44555566666665
Q ss_pred hhHHHHHHHHHHHHHHHhcCCC
Q 020060 150 ENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p 171 (331)
++++|...+..+.+++-
T Consensus 197 -----~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 197 -----NWEEAAHDLALACKLDY 213 (377)
T ss_pred -----chHHHHHHHHHHHhccc
Confidence 59999999999988753
No 262
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.018 Score=44.99 Aligned_cols=101 Identities=14% Similarity=-0.017 Sum_probs=79.0
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSM 140 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 140 (331)
......++..+...+++ ++|+..++.++....+. .-+-..+|.+....|.+++|+..+.....-+-....-...|.
T Consensus 89 ~laaL~lAk~~ve~~~~-d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNL-DKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccH-HHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhh
Confidence 44566788999999997 99999999999765443 346688999999999999999998765332222234556899
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
++...| +-++|...|.++++.+++.
T Consensus 168 ill~kg--------~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 168 ILLAKG--------DKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHcC--------chHHHHHHHHHHHHccCCh
Confidence 999887 4899999999999987544
No 263
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.91 E-value=0.0023 Score=33.77 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=30.0
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+++.+|.++..+|++++|..+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 468899999999999999999999999988863
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.04 Score=45.96 Aligned_cols=152 Identities=11% Similarity=0.036 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch--
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-- 175 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 175 (331)
.+.-..-+.-....|++.+|...|..++...|++ .+...++.++...| +.+.|...+... |....
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g--------~~e~A~~iL~~l----P~~~~~~ 201 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAG--------DVEAAQAILAAL----PLQAQDK 201 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcC--------ChHHHHHHHHhC----cccchhh
Confidence 3344556667788999999999999999999999 88899999999887 488887776542 32221
Q ss_pred hHHH-HH--HHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 176 SWYN-LG--NACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 176 ~~~~-l~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+.. .+ ..+... ....+. ..+++.+. ..|+|..+-+.+|..+...|++++|+..+-..++.+...
T Consensus 202 ~~~~l~a~i~ll~qa---------a~~~~~-~~l~~~~a--adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~ 269 (304)
T COG3118 202 AAHGLQAQIELLEQA---------AATPEI-QDLQRRLA--ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF 269 (304)
T ss_pred HHHHHHHHHHHHHHH---------hcCCCH-HHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 1111 11 111111 111111 22333344 459999999999999999999999999999999887654
Q ss_pred cH--H-HHHHHHHHHHHHHHHHHHh
Q 020060 253 NA--T-EEVQMMVNLLDKIENLLKG 274 (331)
Q Consensus 253 ~~--~-~~l~~~~~~l~~~~~a~~~ 274 (331)
.. . ..+-.++...|..+.....
T Consensus 270 ~d~~~Rk~lle~f~~~g~~Dp~~~~ 294 (304)
T COG3118 270 EDGEARKTLLELFEAFGPADPLVLA 294 (304)
T ss_pred cCcHHHHHHHHHHHhcCCCCHHHHH
Confidence 33 3 6666777766655554433
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.84 E-value=0.0067 Score=45.99 Aligned_cols=63 Identities=17% Similarity=0.137 Sum_probs=51.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
..++..++..+...|++ ++|+..+++++..+|.+..+|..+..+|...|+..+|+..|++...
T Consensus 62 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDY-EEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-H-HHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34555667778888997 9999999999999999999999999999999999999999988743
No 266
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.82 E-value=0.051 Score=47.76 Aligned_cols=128 Identities=19% Similarity=0.153 Sum_probs=97.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CC-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP----SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--PN- 131 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~- 131 (331)
.+......|...+.+....|.+ +.|...+.++....+ ..+.+.+..+...+..|+..+|+..++..+... ..
T Consensus 141 ~~~~~~~~~l~~a~~aRk~g~~-~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 141 LPEELAETWLKFAKLARKAGNF-QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred chhHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 3567788899999999999998 999999999988652 257788889999999999999999998888711 10
Q ss_pred ------------------------h-HHHhhHHHHHHHhccCchh-----HHHHHHHHHHHHHHHhcCCCCCchhHHHHH
Q 020060 132 ------------------------K-KILCQLSMLERSMAQGSEN-----QAEIVEESIQHAKEAITLDVKDGNSWYNLG 181 (331)
Q Consensus 132 ------------------------~-~~~~~l~~~~~~~g~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 181 (331)
. ......+.++..+|..... ..+..+++...|.++++.+|+...+|+.+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 0 1112234444444432211 125688999999999999999999999999
Q ss_pred HHHHhh
Q 020060 182 NACLTS 187 (331)
Q Consensus 182 ~~~~~~ 187 (331)
..+...
T Consensus 300 ~~~~~~ 305 (352)
T PF02259_consen 300 LFNDKL 305 (352)
T ss_pred HHHHHH
Confidence 988766
No 267
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.81 E-value=0.13 Score=44.70 Aligned_cols=152 Identities=15% Similarity=0.109 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCC------------hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGD------------LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQ 152 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~ 152 (331)
.-|.+.++-+|.+.++|..+.......-. .+.-+..|++|++.+|++ ..+..+-.....+.
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~------ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW------ 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------
Confidence 44778888999999999988876554422 456788999999999987 44433333333332
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-hcCC--------C-----
Q 020060 153 AEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMKS--------N----- 218 (331)
Q Consensus 153 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~--------~----- 218 (331)
..++..+-+++++..+|+++..|...-......+ ..-.+......|.+++..- .... -
T Consensus 80 --~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~------~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~ 151 (321)
T PF08424_consen 80 --DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNF------ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEE 151 (321)
T ss_pred --CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh------ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHH
Confidence 3667788899999999999999876555444320 1134566677777766510 0000 0
Q ss_pred --hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 219 --PDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 219 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..++..+.......|..+.|+..++-.++++=-
T Consensus 152 ~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 152 FMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 122567777788999999999999999997643
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.81 E-value=0.0024 Score=33.72 Aligned_cols=32 Identities=34% Similarity=0.475 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 131 (331)
.++..+|.++...|++++|+.+|+++++..|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677788888888888888888888777664
No 269
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.71 E-value=0.066 Score=38.20 Aligned_cols=100 Identities=21% Similarity=0.164 Sum_probs=65.8
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------------chhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------------GNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
++..|+....++ ..+-|++|...++++.+...+- ...+-.|+.++..+ |+|++
T Consensus 9 aY~aLs~ae~ql------~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L---------gry~e 73 (144)
T PF12968_consen 9 AYMALSDAERQL------QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL---------GRYDE 73 (144)
T ss_dssp HHHHHHHHHHHH------HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT---------T-HHH
T ss_pred HHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh---------ccHHH
Confidence 344455555544 3467999999999998754322 23556778888888 99999
Q ss_pred HHHHHHHHHhc-----hhcCCChhH----HhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 202 SLKAYQNAEKD-----ERMKSNPDL----YFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 202 A~~~~~~al~~-----~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
++..-++++.. ....+.... .++.|..+..+|+.++|+..|+.+-++
T Consensus 74 ~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 74 CLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 98888888751 111333333 467788888888888888888887653
No 270
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.69 E-value=0.017 Score=39.61 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhc
Q 020060 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMA 146 (331)
Q Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g 146 (331)
..+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. .+...+-.++..+|
T Consensus 6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 6 PDIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 35678899999999999999999999999999999999999999998776 45555555555555
No 271
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.57 E-value=0.27 Score=46.87 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=109.0
Q ss_pred chhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhh-cccccHHHHHHHHHHHHhcCCC--cH----HHHHHHH
Q 020060 34 KVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILD-VVPEYRKDAEDHLSKAVKLNPS--LA----DAWLCLG 106 (331)
Q Consensus 34 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~lg 106 (331)
...+..+-+..++.+|+.+.......|...+.+.+.+|.++. ...++ +.|..++.+++.+... .. .+.+.++
T Consensus 29 ~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~-~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~ 107 (608)
T PF10345_consen 29 QLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENL-DLAETYLEKAILLCERHRLTDLKFRCQFLLA 107 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 344566778888888887776555678899999999999998 67786 9999999999887643 32 3456678
Q ss_pred HHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC--CCchhHH-
Q 020060 107 SCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV--KDGNSWY- 178 (331)
Q Consensus 107 ~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~- 178 (331)
.++.+.+... |...+++.++..... ...+.+-.+...+ ..+++..|++.++....... .++.+..
T Consensus 108 ~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~------~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 108 RIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLAL------QHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH------hcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 8888888777 999999999876552 2222232222221 11368889999998887653 3333222
Q ss_pred -H--HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 179 -N--LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 179 -~--l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
. .+.+.... +..+++++..++++.
T Consensus 181 ~~l~~~~l~l~~---------~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 181 ASLSEALLHLRR---------GSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHhcC---------CCchhHHHHHHHHHH
Confidence 2 23333333 667777777777754
No 272
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.56 E-value=0.19 Score=47.25 Aligned_cols=183 Identities=16% Similarity=0.101 Sum_probs=123.8
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc-----ccccHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV-----VPEYRKDAEDHLSKAVKL-----NPSLADAWLCLGSCIWK 111 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~ 111 (331)
...+...++.... .......+.+|.++.. ..+. +.|+.+|+.+..- .-..+.+.+.+|.+|.+
T Consensus 228 ~~~a~~~~~~~a~------~g~~~a~~~~g~~y~~G~~g~~~d~-e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 228 LSEAFKYYREAAK------LGHSEAQYALGICYLAGTYGVTQDL-ESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQ 300 (552)
T ss_pred hhHHHHHHHHHHh------hcchHHHHHHHHHHhhccccccccH-HHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhc
Confidence 3445555554432 1233444455655554 3464 8999999999771 11256688999999998
Q ss_pred hC-----ChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 020060 112 KG-----DLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT 186 (331)
Q Consensus 112 ~g-----~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 186 (331)
.. ++..|+.+|.++...... .+.+.+|.++..-. ..+++..|.++|..|.+. .+..+.+.++.+|..
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~-----~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGT-----KERDYRRAFEYYSLAAKA--GHILAIYRLALCYEL 372 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCC-----ccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence 53 678899999999877644 56777888776443 124688999999998865 467788889988875
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-hcHHHHHHHHHHHHhc
Q 020060 187 SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-ENYERALSGFEASALK 248 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 248 (331)
- ..-..+...|..++.++.. .+++.+.+.++..+... +++..+...+......
T Consensus 373 G-----~gv~r~~~~A~~~~k~aA~----~g~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 373 G-----LGVERNLELAFAYYKKAAE----KGNPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred C-----CCcCCCHHHHHHHHHHHHH----ccChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 3 1123588999999999987 44667666666666543 6666666555544443
No 273
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.54 E-value=0.0064 Score=48.56 Aligned_cols=59 Identities=25% Similarity=0.450 Sum_probs=55.1
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.....++. +.|.+.|.+++.+.|.....|+.+|......|+++.|...|++.++++|.+
T Consensus 4 ~~~~~~D~-~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDA-EAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCCh-HHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567886 889999999999999999999999999999999999999999999999988
No 274
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.54 E-value=0.31 Score=44.21 Aligned_cols=46 Identities=9% Similarity=0.063 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--------------hhHHHHHHHHHHhcC
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGD--------------LPAAKNCFNLALSKG 129 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~ 129 (331)
-.-.+++++..-+-.++.|+.-+..+...++ -+++..+|++++...
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l 323 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGL 323 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 3445666666667777777766555555444 567777777776543
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.46 E-value=0.39 Score=40.82 Aligned_cols=122 Identities=17% Similarity=0.051 Sum_probs=87.9
Q ss_pred hcccccHHHHHHHHHHHHhcC----CCc----HHHHHHHHHHHHHhC-ChhHHHHHHHHHHhc----CCCh---------
Q 020060 75 DVVPEYRKDAEDHLSKAVKLN----PSL----ADAWLCLGSCIWKKG-DLPAAKNCFNLALSK----GPNK--------- 132 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~----p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~~~~--------- 132 (331)
...|++ +.|..++.++-... |+. ...+++.|......+ +++.|..+++++.++ .+..
T Consensus 4 ~~~~~~-~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDL-DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCH-HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356786 88888888876543 332 467888999999999 999999999999887 2211
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
.++..++.++...+. ....++|..+.+.+-...|+.+..+...-.++... ++.+.+.+.+.+.+
T Consensus 83 r~~iL~~La~~~l~~~~-----~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~---------~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDT-----YESVEKALNALRLLESEYGNKPEVFLLKLEILLKS---------FDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHHHcCCC-----hHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhcc---------CChhHHHHHHHHHH
Confidence 355567777776652 23477788888888777888777774444444444 77888888888888
Q ss_pred h
Q 020060 211 K 211 (331)
Q Consensus 211 ~ 211 (331)
.
T Consensus 149 ~ 149 (278)
T PF08631_consen 149 R 149 (278)
T ss_pred H
Confidence 6
No 276
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.45 E-value=0.022 Score=34.55 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.++.+|..+.+.|+|++|..+.+.++++.|++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 345677777777777777777777777777777
No 277
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.79 Score=44.98 Aligned_cols=202 Identities=13% Similarity=0.064 Sum_probs=129.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~ 137 (331)
..+.+|..+|.+-...|.. .+|++.|-++ +++..+...-.+-.+.|.|++-++++.-+-+..... ...+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v-~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLV-KDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCch-HHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence 3467899999999999996 9999998765 667788888888899999999999998876655433 21221
Q ss_pred HHHH------HHHh-ccCchh---------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 138 LSML------ERSM-AQGSEN---------QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 138 l~~~------~~~~-g~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
++.. ..-+ |....+ ..+.|+.|.-+|. +..-|..|+..+..+ |+|..
T Consensus 1176 yAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~L---------geyQ~ 1238 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYL---------GEYQG 1238 (1666)
T ss_pred HHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHH---------HHHHH
Confidence 2111 1111 110000 2334555555554 345677888888888 99999
Q ss_pred HHHHHHHHHhchhcC-----------------------CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 202 SLKAYQNAEKDERMK-----------------------SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 202 A~~~~~~al~~~~~~-----------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
|+...+++-...... -+++-+-.+...|...|-|++-+..++.++-+...+-.. ..
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTE 1318 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTE 1318 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHH
Confidence 999888876421000 012224566677888899999999999999888777665 66
Q ss_pred HHHHHHHH--HHHHHHHHhhhhhhhHHHHHh
Q 020060 258 VQMMVNLL--DKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 258 l~~~~~~l--~~~~~a~~~~~~a~~l~~~~~ 286 (331)
++.++.+- .+.-+-++.|..-..+...++
T Consensus 1319 LaiLYskykp~km~EHl~LFwsRvNipKviR 1349 (1666)
T KOG0985|consen 1319 LAILYSKYKPEKMMEHLKLFWSRVNIPKVIR 1349 (1666)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhcchHHHHH
Confidence 66555432 223333344444444444333
No 278
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.43 E-value=0.011 Score=49.43 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=62.3
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
...+.-....|+. ++|...|..|++++|++++++..+|......++.-+|-.+|-+++.++|.+ .++.+.+.
T Consensus 120 l~~A~~~~~~Gk~-ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 120 LKAAGRSRKDGKL-EKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHhccch-HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3444455667885 999999999999999999999999999999999999999999999999998 77666543
No 279
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.39 E-value=0.015 Score=48.64 Aligned_cols=64 Identities=11% Similarity=0.139 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
|+.++|...|+.++.+. |.+++++..+|.+....++.-+|-.+|-+|+.++|.+..+ .+.++..
T Consensus 130 Gk~ekA~~lfeHAlala--P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 130 GKLEKAMTLFEHALALA--PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred cchHHHHHHHHHHHhcC--CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 88999999999999955 9999999999999988899999999999999999988776 5555443
No 280
>PRK10941 hypothetical protein; Provisional
Probab=96.39 E-value=0.041 Score=46.15 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=65.3
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
...++-.+|... ++++.|+.+.+..+... |+++.-+.-.|.+|.++|.+..|...++..++..|+++.+
T Consensus 183 ml~nLK~~~~~~---------~~~~~AL~~~e~ll~l~--P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 183 LLDTLKAALMEE---------KQMELALRASEALLQFD--PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHc---------CcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 345677777777 99999999999999955 9999999999999999999999999999999999999987
Q ss_pred HHHHHH
Q 020060 256 EEVQMM 261 (331)
Q Consensus 256 ~~l~~~ 261 (331)
..+...
T Consensus 252 ~~ik~q 257 (269)
T PRK10941 252 EMIRAQ 257 (269)
T ss_pred HHHHHH
Confidence 444433
No 281
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.30 E-value=0.051 Score=37.25 Aligned_cols=72 Identities=18% Similarity=0.183 Sum_probs=45.3
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc--HH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN--AT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
+..+++.+..+ |++..+.+.+|..+...|++++|+..+-.+++.++++. .+ ..+-.++..+|.-+..+..|.
T Consensus 8 ~~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 44556666633 77878888888888888888888888888877777652 33 666667777776555554443
No 282
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.14 Score=45.73 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHhC--ChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 99 ADAWLCLGSCIWKKG--DLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
+.++.++|..+...| +...+++|++..+...|.. .....+|.+++.-. ++++.|...++++..+...
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT-------~N~elAksHLekA~~i~~~ 79 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYT-------KNVELAKSHLEKAWLISKS 79 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHcc
Confidence 456778888888888 8889999999999888877 45566788777654 5789999999998776433
Q ss_pred Cc-------hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHH
Q 020060 173 DG-------NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 173 ~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 241 (331)
-| ++...|+.+|... + ..+..|...+.++++.. ...| ...+.++.++....++..|.+.
T Consensus 80 ip~fydvKf~a~SlLa~lh~~~-------~-~s~~~~KalLrkaiels--q~~p~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 80 IPSFYDVKFQAASLLAHLHHQL-------A-QSFPPAKALLRKAIELS--QSVPYWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred cccHHhhhhHHHHHHHHHHHHh-------c-CCCchHHHHHHHHHHHh--cCCchhhHHHHHHHHHHHhhhccchhHHHH
Confidence 33 3445677877776 1 27788999999999854 5555 3368899999999999999987
Q ss_pred HHH
Q 020060 242 FEA 244 (331)
Q Consensus 242 ~~~ 244 (331)
+.-
T Consensus 150 Lav 152 (629)
T KOG2300|consen 150 LAV 152 (629)
T ss_pred Hhc
Confidence 443
No 283
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.22 E-value=0.33 Score=39.39 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=61.4
Q ss_pred CcchhhHHHHHhhhhhhccccc------HHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 59 SPTQRATYEYLKGKILDVVPEY------RKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~------~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
.+...+.++..+|.+|...|+- ...|...|.+++.... +.....+.+|.++.+.|++++|+.+|.+++
T Consensus 113 ~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 113 KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5557788999999999999983 2456666666665432 225688999999999999999999999999
Q ss_pred hcCCCh--HHHhhHHH
Q 020060 127 SKGPNK--KILCQLSM 140 (331)
Q Consensus 127 ~~~~~~--~~~~~l~~ 140 (331)
...... ..+..++.
T Consensus 193 ~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 193 GSKKASKEPKLKDMAR 208 (214)
T ss_pred cCCCCCCcHHHHHHHH
Confidence 765444 24444444
No 284
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.10 E-value=0.14 Score=50.53 Aligned_cols=108 Identities=13% Similarity=0.121 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..+.|++|+..|++.-...|... ++.+.+|.+++......+ +...+++|+..|++.- ..|.-|--|...|.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 487 AEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG--DPRDFTQALSEFSYLH---GGVGAPLEYLGKALV 561 (932)
T ss_pred hhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC--ChHHHHHHHHHHHHhc---CCCCCchHHHhHHHH
Confidence 56789999999999999998654 577899999988765555 3358899999999875 346667779999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
|.++|++++-+++|.-|++..|+++.. .....+..+
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYR 598 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 999999999999999999999999875 444444433
No 285
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.07 E-value=0.075 Score=37.92 Aligned_cols=87 Identities=10% Similarity=0.041 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHHHHhch-hcCC---------ChhHHhhHHHHHHHhhcHHHHHHHHHHHHh-------cCCCCc----HH
Q 020060 197 SKLLQSLKAYQNAEKDE-RMKS---------NPDLYFNCATVNKYLENYERALSGFEASAL-------KDPSLN----AT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~-~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~~~~~----~~ 255 (331)
|-|++|...+.++.... ..|. +.-++..|+..+..+|+|++++..-.+++. ++.+.. .+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 88999999999999632 1121 234478889999999999998887777775 344432 23
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
...+..+..+|+.++|++.|..+-++..
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMia 131 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIA 131 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 7778888999999999999999987654
No 286
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.52 Score=43.15 Aligned_cols=159 Identities=17% Similarity=0.182 Sum_probs=100.0
Q ss_pred cccHHHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-----C-----------
Q 020060 78 PEYRKDAEDHLSKAVKL------------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK-----G----------- 129 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~----------- 129 (331)
..| ++|...|.-+... .|.+.+.+..++.++...|+.+-|.....+++-. .
T Consensus 252 ~sY-eqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 252 NSY-EQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred hHH-HHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 455 7777777776654 4667889999999999999999888888777521 1
Q ss_pred -----CChH-HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 130 -----PNKK-ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 130 -----~~~~-~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
|.+. .+..+-.....+. +.|-+..|.++++-.+.++|. +|.+...+-..|... ..+|.=-
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~-----~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr--------areYqwi 397 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLA-----QRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR--------AREYQWI 397 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHH-----hcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH--------HHhHHHH
Confidence 2221 2222222222222 456799999999999999998 887766666655533 1455544
Q ss_pred HHHHHHHHhchhcCCChhHHhhH--HHHHHHhhc---HHHHHHHHHHHHhcCC
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNC--ATVNKYLEN---YERALSGFEASALKDP 250 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~l--a~~~~~~g~---~~~A~~~~~~al~~~~ 250 (331)
+..++..-..+....-|..-+.+ |..|..... -..|...+.+|+...|
T Consensus 398 I~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 398 IELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 55554443222222233333444 444444444 5678889999998777
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.00 E-value=0.55 Score=44.04 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=18.0
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
|++...+-.+|..+...|--++|.+.|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55556666666666666666666665543
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.99 E-value=0.85 Score=38.75 Aligned_cols=224 Identities=12% Similarity=0.050 Sum_probs=126.1
Q ss_pred HHHHHHHHHhhhhccCCCCccchhhhHHHHHHHHHHhcC---CCCCCCCCcchhhHHHHHhhhhhhccccc--HHHHHHH
Q 020060 13 TKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGS---VPPEQRKSPTQRATYEYLKGKILDVVPEY--RKDAEDH 87 (331)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~A~~~ 87 (331)
....+-+|.+....+... ....+.-.-++.|.++++. ...........+..++..++.++...+.+ ..+|...
T Consensus 32 ~~La~~~yn~G~~l~~~~--~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~ 109 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKK--DKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNA 109 (278)
T ss_pred HHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 444455555555554444 1223333445666777644 22221113346778888999999987764 1346666
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 88 LSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 88 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
++.+-.-.|+.+..+...-.+....++.+++.+.+.+.+.-.+-. ..+......+..+. ......+..++...
T Consensus 110 l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~------~~~~~~a~~~ld~~ 183 (278)
T PF08631_consen 110 LRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLA------EKSPELAAFCLDYL 183 (278)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHH------hhCcHHHHHHHHHH
Confidence 666666678877777555555555899999999999998766522 22222222222221 12355677777666
Q ss_pred hcC--CCCCchhHHHHHHHHHhhhhhcCCC---ChhhHHHHHHHHHHHHhchhcCCChh-------HHhhHHHHHHHhhc
Q 020060 167 ITL--DVKDGNSWYNLGNACLTSFFVTGSW---DHSKLLQSLKAYQNAEKDERMKSNPD-------LYFNCATVNKYLEN 234 (331)
Q Consensus 167 l~~--~p~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~A~~~~~~al~~~~~~~~~~-------~~~~la~~~~~~g~ 234 (331)
+.. .|.... |.....+.... ...... ..++.+.....+....+....|-.+. ...+.|..+++.++
T Consensus 184 l~~r~~~~~~~-~~e~~vl~~~~-~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~ 261 (278)
T PF08631_consen 184 LLNRFKSSEDQ-WLEKLVLTRVL-LTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKN 261 (278)
T ss_pred HHHHhCCChhH-HHHHHHHHHHH-HHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence 643 332222 54444443322 111111 11234444444443333222233332 26888999999999
Q ss_pred HHHHHHHHHHHH
Q 020060 235 YERALSGFEASA 246 (331)
Q Consensus 235 ~~~A~~~~~~al 246 (331)
|++|..+|+-++
T Consensus 262 y~~A~~w~~~al 273 (278)
T PF08631_consen 262 YDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHH
Confidence 999999999776
No 289
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.95 E-value=1 Score=43.43 Aligned_cols=175 Identities=13% Similarity=-0.014 Sum_probs=114.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
..+..--..|.+....|++ +.|+.+.+.++..-|.. ..++..+|.+..-.|++++|..+...+.+.....
T Consensus 456 l~ae~~aL~a~val~~~~~-e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 456 LLAEFQALRAQVALNRGDP-EEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Confidence 4455666778888899996 99999999999987754 4577889999999999999999999998875433
Q ss_pred -HH--HhhHHHHHHHhccCchhHHHHHHHHHHHHHHH----hcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH
Q 020060 133 -KI--LCQLSMLERSMAQGSENQAEIVEESIQHAKEA----ITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA 205 (331)
Q Consensus 133 -~~--~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 205 (331)
.. ....+.++...|+ . .+.+....+... +...|-+.......+.++... -+++.+...
T Consensus 535 l~~~~~~~~s~il~~qGq-----~-~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~---------~r~~~~~~e 599 (894)
T COG2909 535 LALWSLLQQSEILEAQGQ-----V-ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAW---------LRLDLAEAE 599 (894)
T ss_pred HHHHHHHHHHHHHHHhhH-----H-HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHH---------HHHhhhhHH
Confidence 22 3335666666662 1 133333333332 223344444444444444433 345666655
Q ss_pred HHHHHhch--hcCCChhH---HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 206 YQNAEKDE--RMKSNPDL---YFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 206 ~~~al~~~--~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
..+.++.. ..|..... ++.++.+....|++++|...+.....+..+.
T Consensus 600 ar~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 600 ARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred hhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 55555421 11222222 3589999999999999999999887764443
No 290
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.93 E-value=0.2 Score=35.47 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=68.5
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCC-----------hhHHHHHHHHHHhcCCCh-HH
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLNPSLA---DAWLCLGSCIWKKGD-----------LPAAKNCFNLALSKGPNK-KI 134 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~~~~-~~ 134 (331)
++..++..|++ -+|++..+..+...+++. ..+..-|.++..... .-.|+++|.++..+.|.. ..
T Consensus 2 ~A~~~~~rGnh-iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 2 KAKDYFARGNH-IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred hHHHHHHccCH-HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 35667788996 999999999999988776 455566777765432 346899999999999988 66
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
++.+|.-+.. ...|++++.-.++++.+.
T Consensus 81 L~~la~~l~s--------~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 81 LFELASQLGS--------VKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHhhh--------HHHHHHHHHHHHHHhccc
Confidence 6666664332 235889999988888653
No 291
>PRK10941 hypothetical protein; Provisional
Probab=95.91 E-value=0.096 Score=43.95 Aligned_cols=70 Identities=9% Similarity=-0.118 Sum_probs=64.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.-.+.+.++-.++...+++ +.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++..|++
T Consensus 179 il~Rml~nLK~~~~~~~~~-~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d 248 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQM-ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED 248 (269)
T ss_pred HHHHHHHHHHHHHHHcCcH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc
Confidence 3456677788889999998 999999999999999999999999999999999999999999999999988
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.90 E-value=0.19 Score=40.72 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhh-------HHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSK-------LLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
+..+..++++|... |+ +..|+..|.++......|.. ..+.+.+|.++.+.|++++|..+|
T Consensus 118 A~l~LrlAWlyR~~---------~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~f 188 (214)
T PF09986_consen 118 AGLCLRLAWLYRDL---------GDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWF 188 (214)
T ss_pred HHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44566777777766 44 45677778887764323322 356899999999999999999999
Q ss_pred HHHHhcCCCCc
Q 020060 243 EASALKDPSLN 253 (331)
Q Consensus 243 ~~al~~~~~~~ 253 (331)
.+++.....+.
T Consensus 189 s~vi~~~~~s~ 199 (214)
T PF09986_consen 189 SRVIGSKKASK 199 (214)
T ss_pred HHHHcCCCCCC
Confidence 99998765554
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.75 E-value=0.024 Score=32.24 Aligned_cols=31 Identities=23% Similarity=0.148 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+.++.++|.+|...|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4577889999999999999999999988653
No 294
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.94 Score=42.12 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
+.+-|.-+++..+|..+++.|...+...|.+ .....+..+|..+. +.+.|++++++|-+.+|.++
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~--------QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE--------QLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH--------HHHHHHHHHHHHHhhccccH
Confidence 3445666788899999999999999888876 34556777888664 69999999999999999998
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
-....+-.+.... +.-++|+.+..+...
T Consensus 429 l~q~~~~~~~~~E---------~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 429 LCQLLMLQSFLAE---------DKSEEALTCLQKIKS 456 (872)
T ss_pred HHHHHHHHHHHHh---------cchHHHHHHHHHHHh
Confidence 8777777777666 888999988887765
No 295
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.70 E-value=1.6 Score=39.81 Aligned_cols=185 Identities=13% Similarity=0.108 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccccc------HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEY------RKDAEDHLSKAVKLNP-SLADAWLCLGSCIWKK 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~ 112 (331)
-.+++++..+.-.+. -.-+.+.++...+..+...|+. .+++..+|++++..-- .+...++.++..-...
T Consensus 266 yayeQ~ll~l~~~pe----iWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~ 341 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPE----IWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESR 341 (656)
T ss_pred HHHHHHHHHHhcCHH----HHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 444555555554432 1112233333444444444442 3678888888877533 3344445555443333
Q ss_pred CC---hhHHHHHHHHHHhcCCCh--HHHhh-HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HH
Q 020060 113 GD---LPAAKNCFNLALSKGPNK--KILCQ-LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA-CL 185 (331)
Q Consensus 113 g~---~~~A~~~~~~al~~~~~~--~~~~~-l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~ 185 (331)
-+ ++.....+++++.+...+ -+++. +-.+...-| .+.|...|.++-+.--..-.++..-|.+ |.
T Consensus 342 ~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG---------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 342 YDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG---------LKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred cccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh---------HHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 33 777888888888776554 33333 333333333 8888999998876433322344333333 33
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.. ++.+-|...|+-.++ ..++.+..-......+...|+-..|...|++++..
T Consensus 413 cs---------kD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 413 CS---------KDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred hc---------CChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 34 899999999999999 45999998888899999999999999999999987
No 296
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.67 E-value=0.022 Score=32.36 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=26.0
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
.++.++|.+|..+|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 467899999999999999999999999753
No 297
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.56 E-value=0.98 Score=39.60 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
.......|...+.+....|.++.|...+.++....+.. .+.+..+.++...|+ ..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~--------~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGE--------QEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCC--------HHHHHHHHHHHHH
Confidence 34557789999999999999999999999998876322 556667888887763 7888888888777
No 298
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.54 E-value=0.15 Score=45.62 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQH 162 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~ 162 (331)
-...|+.++...+.+...|..........+.+.+-...|.+++...|++ ..|...+.-.+..+. +++.|...
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-------ni~saRal 162 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-------NIESARAL 162 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc-------chHHHHHH
Confidence 3455666666666666666666655555555666666666666666666 555555555554432 36666666
Q ss_pred HHHHhcCCCCCchhHH
Q 020060 163 AKEAITLDVKDGNSWY 178 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~ 178 (331)
+.++++.+|+++..|.
T Consensus 163 flrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 163 FLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHhhcCCCChHHHH
Confidence 6666666666666553
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.53 E-value=0.44 Score=37.39 Aligned_cols=101 Identities=11% Similarity=-0.058 Sum_probs=74.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 132 (331)
......+..+|..|...|++ +.|+++|.++....... .+.+..+-.+....+++.....+..++-......
T Consensus 33 esir~~~~~l~~~~~~~Gd~-~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDL-EEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 35567788999999999997 99999999988765432 5678888899999999999999999987654332
Q ss_pred HHHhh--HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 133 KILCQ--LSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 133 ~~~~~--l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
..... -|..+... ++|..|.+.|-.+....
T Consensus 112 ~nrlk~~~gL~~l~~--------r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQ--------RDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHh--------chHHHHHHHHHccCcCC
Confidence 22222 33333333 57999999987765443
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.53 E-value=0.3 Score=43.67 Aligned_cols=120 Identities=9% Similarity=-0.079 Sum_probs=89.1
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
..|+. ..|-.-+..++...|.++..-...+.++...|+|+.|...+.-+-..-... .+...+-.....+|
T Consensus 301 ~~gd~-~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~-------- 371 (831)
T PRK15180 301 ADGDI-IAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLA-------- 371 (831)
T ss_pred hccCH-HHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchh--------
Confidence 45774 777888888899999999988899999999999999998887665443332 44444444555554
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
++++|.....-.+...-+++++....+.....+ |-++++..++.+.+.++
T Consensus 372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l---------~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADAL---------QLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hHHHHHHHHHHHhccccCChhheeeecccHHHH---------hHHHHHHHHHHHHhccC
Confidence 688888888877776666666665555555556 88899999999988754
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.49 E-value=0.34 Score=43.57 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc-
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN- 234 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~- 234 (331)
...-+..|+.|+...+.++..|.......... +.+.+--..|.+++.. +|+++++|..-|.-.+.-+.
T Consensus 87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~---------~~~~~v~ki~~~~l~~--Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKK---------KTYGEVKKIFAAMLAK--HPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh---------cchhHHHHHHHHHHHh--CCCCchhHHhhhhhHHhhccc
Confidence 44567788889999999999998887777666 6688888999999994 49999999999988887776
Q ss_pred HHHHHHHHHHHHhcCCCCcHH
Q 020060 235 YERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+.|...|.++++.+|+++..
T Consensus 156 i~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 156 IESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred hHHHHHHHHHHhhcCCCChHH
Confidence 999999999999999998864
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.43 E-value=2.8 Score=40.70 Aligned_cols=200 Identities=13% Similarity=0.067 Sum_probs=124.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+......+.......+| .+|..++.++...-+. .+...-..|.+....|++++|++..+.++..-|.+
T Consensus 413 ~~P~Lvll~aW~~~s~~r~-~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~ 491 (894)
T COG2909 413 STPRLVLLQAWLLASQHRL-AEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA 491 (894)
T ss_pred hCchHHHHHHHHHHHccCh-HHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc
Confidence 4455566677778888897 8898888887665333 13455667888899999999999999999888876
Q ss_pred ------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC----chhHH--HHHHHHHhhhhhcCCCChh--h
Q 020060 133 ------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD----GNSWY--NLGNACLTSFFVTGSWDHS--K 198 (331)
Q Consensus 133 ------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~--~l~~~~~~~~~~~~~~~~~--~ 198 (331)
.++..+|.+..-.| ++++|..+..++.+....+ -..|. ..+.++... | .
T Consensus 492 ~~~~r~~~~sv~~~a~~~~G--------~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~q---------Gq~~ 554 (894)
T COG2909 492 AYRSRIVALSVLGEAAHIRG--------ELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQ---------GQVA 554 (894)
T ss_pred cchhhhhhhhhhhHHHHHhc--------hHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHh---------hHHH
Confidence 34555777777665 6999999999888764332 22332 234445544 6 3
Q ss_pred HHHHHHHHHHHHh--chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc----CCCCcH--H--HHHHHHHHHHHHH
Q 020060 199 LLQSLKAYQNAEK--DERMKSNPDLYFNCATVNKYLENYERALSGFEASALK----DPSLNA--T--EEVQMMVNLLDKI 268 (331)
Q Consensus 199 ~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~~~~--~--~~l~~~~~~l~~~ 268 (331)
+.+....|...-. ....|.+.......+.++..--+++.+..-....+++ .|.... . ..++.+....|+.
T Consensus 555 ~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl 634 (894)
T COG2909 555 RAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL 634 (894)
T ss_pred HHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH
Confidence 3444444443332 1122444334444444444433466666655555554 333322 2 3677888888888
Q ss_pred HHHHHhhhhhh
Q 020060 269 ENLLKGHAKTK 279 (331)
Q Consensus 269 ~~a~~~~~~a~ 279 (331)
++|.....+..
T Consensus 635 ~~A~~~l~~~~ 645 (894)
T COG2909 635 DKALAQLDELE 645 (894)
T ss_pred HHHHHHHHHHH
Confidence 88875544433
No 303
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.34 E-value=0.36 Score=36.74 Aligned_cols=85 Identities=15% Similarity=0.033 Sum_probs=70.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.....+.....+-...++. +++...+.-.-.+.|..+..-..-|.++...|++.+|+..|+.+....|.. .+--.++.
T Consensus 8 ~iv~gLie~~~~al~~~~~-~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDP-DDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHccCCh-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444555666666677785 889999988888999999999999999999999999999999998888877 55566888
Q ss_pred HHHHhcc
Q 020060 141 LERSMAQ 147 (331)
Q Consensus 141 ~~~~~g~ 147 (331)
|+..+|+
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 8887764
No 304
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=95.34 E-value=1 Score=35.09 Aligned_cols=170 Identities=15% Similarity=0.073 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc-----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 020060 37 KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV-----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK 111 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 111 (331)
-+++.++.|..++...-. ....+...|.+|..++. .++. ..|++.|..+.. .+.+.+...+|.+++.
T Consensus 46 gi~knF~~A~kv~K~nCd-----en~y~kSCyKyG~y~~~GKgG~~~~l-~~a~r~~~~aC~--~n~~~aC~~~gLl~~~ 117 (248)
T KOG4014|consen 46 GIQKNFQAAVKVFKKNCD-----ENSYPKSCYKYGMYMLAGKGGDDASL-SKAIRPMKIACD--ANIPQACRYLGLLHWN 117 (248)
T ss_pred HHHHHHHHHHHHHHhccc-----ccCCcHHHHHhhhhhhcccCCCccCH-HHHHHHHHHHhc--cCCHHHHhhhhhhhcc
Confidence 477888999999987652 23445566666655543 3464 889999998877 4668888999998875
Q ss_pred h-----CC--hhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHH
Q 020060 112 K-----GD--LPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGN 182 (331)
Q Consensus 112 ~-----g~--~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 182 (331)
. ++ ..+|.+++.++..+... .+.+.|+..+..- .++ +....|. .|...-.++.
T Consensus 118 g~~~r~~dpd~~Ka~~y~traCdl~~~-~aCf~LS~m~~~g----------~~k-------~~t~ap~~g~p~~~~~~~~ 179 (248)
T KOG4014|consen 118 GEKDRKADPDSEKAERYMTRACDLEDG-EACFLLSTMYMGG----------KEK-------FKTNAPGEGKPLDRAELGS 179 (248)
T ss_pred CcCCccCCCCcHHHHHHHHHhccCCCc-hHHHHHHHHHhcc----------chh-------hcccCCCCCCCcchhhhhh
Confidence 3 33 67899999998876644 4445555544421 222 1222342 2222222333
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhc
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALK 248 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 248 (331)
.. .+.++|..+--++-. -+++.+..|+...|.. -.+-++|..+-.+|.++
T Consensus 180 ---~~---------kDMdka~qfa~kACe----l~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 180 ---LS---------KDMDKALQFAIKACE----LDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred ---hh---------HhHHHHHHHHHHHHh----cCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 23 677888888888766 5567777777776653 13455666666655544
No 305
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.29 E-value=1.3 Score=42.11 Aligned_cols=53 Identities=9% Similarity=-0.024 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+.++-|...-+-+.+ ...+.++..++..+...|++++|-++|-.+++++.-+.
T Consensus 977 ~afd~afdlari~~k----~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 977 CAFDFAFDLARIAAK----DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred cchhhHHHHHHHhhh----ccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 444444444444443 55677889999999999999999999999999876543
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.27 E-value=0.35 Score=37.95 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=56.4
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..++..+|..|... |+.+.|++.|.++......+. -.+.++++-.+....+++.....+..++-.....
T Consensus 36 r~~~~~l~~~~~~~---------Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 36 RMALEDLADHYCKI---------GDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK 105 (177)
T ss_pred HHHHHHHHHHHHHh---------hhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 45788999999999 999999999999886432222 2356889999999999999999999999876554
No 307
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.26 E-value=0.87 Score=45.15 Aligned_cols=137 Identities=10% Similarity=-0.002 Sum_probs=97.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
...++...+.|++|+..|++...-.|.- ++.+..|..+........+. ..+++|+.-|+..- -.|.-|--|...
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP-RDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh-HHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 4467788889999999999999998876 88999999888665433333 35889998888653 456666677777
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-----hcHHHHHHHHHHHHhcCCCCcH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-----ENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+.+|..+ |++++-+++|.-+++ ..|.+|..-...-.+-+++ .+...|...+--++..-|....
T Consensus 559 ~~~~~~~---------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (932)
T PRK13184 559 ALVYQRL---------GEYNEEIKSLLLALK--RYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKIS 626 (932)
T ss_pred HHHHHHh---------hhHHHHHHHHHHHHH--hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 8888888 999999999999999 4588776522222221111 2344566666667777776544
No 308
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.24 E-value=1.1 Score=38.96 Aligned_cols=151 Identities=7% Similarity=0.019 Sum_probs=99.6
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccC----chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQG----SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~----~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
.-|++.++-+|.+ ..|..+....-.+-.. ........+.-+.++++|++.+|++...+..+-.+....
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~------- 78 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKV------- 78 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-------
Confidence 4578888999999 8888877665544221 122344577889999999999999988888777777766
Q ss_pred ChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH---hhcHHHHHHHHHHHHhcCC-----------CCcH------
Q 020060 195 DHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY---LENYERALSGFEASALKDP-----------SLNA------ 254 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~-----------~~~~------ 254 (331)
.+.++....+++++... |+++.+|...-..... .-.+......|.+++..-. ....
T Consensus 79 --~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l 154 (321)
T PF08424_consen 79 --WDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFML 154 (321)
T ss_pred --CCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 67777888899999854 9998887554443332 2246666666666665311 1111
Q ss_pred -H-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 255 -T-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 255 -~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
. ..+...+...|-.+.|+..++...++
T Consensus 155 ~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 155 YVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 1 34444455666677777666555544
No 309
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.16 E-value=0.13 Score=46.32 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=57.0
Q ss_pred CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc
Q 020060 113 GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 191 (331)
+....|+..|.++++..|.. ..+.+.+.+++..+ ..++.-.|+.....|++++|....+|+.|+.++..+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-----W~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el---- 458 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-----WRGDSYLALRDCHVALRLNPSIQKAHFRLARALNEL---- 458 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-----ccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH----
Confidence 44566777777777777776 55666666665543 334455667777777777777777777777777777
Q ss_pred CCCChhhHHHHHHHHHHHHh
Q 020060 192 GSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~ 211 (331)
+++.+|+.+...+..
T Consensus 459 -----~r~~eal~~~~alq~ 473 (758)
T KOG1310|consen 459 -----TRYLEALSCHWALQM 473 (758)
T ss_pred -----hhHHHhhhhHHHHhh
Confidence 777777776665553
No 310
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.08 E-value=0.23 Score=34.34 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHhchhcCCC-------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSN-------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDK 267 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~ 267 (331)
|++..|++.+.+.........+ ..+..++|.++...|++++|+..++.++.+.....+...++.++..+-.
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 8999998887777752211221 3457889999999999999999999999988777666555555554443
No 311
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.95 E-value=0.52 Score=47.24 Aligned_cols=169 Identities=15% Similarity=0.109 Sum_probs=120.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHH------HHHHH-HhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-----
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAED------HLSKA-VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----- 129 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 129 (331)
..+.-....|......|.+ .+|.+ .+... -.+.|..+..+..++.++...|++++|+..-.++.-+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~-~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGF-SEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccch-hhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 4445556677777777886 77777 44422 23468888999999999999999999999988886443
Q ss_pred --CCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 130 --PNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 130 --~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+ ..+.+++...+... +...|+..+.++..+ .|.-.....+++.++... +
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~--------~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v---------~ 1071 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVK--------NLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV---------E 1071 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhcc--------CccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH---------H
Confidence 222 55666776665443 466777777777653 344445567888888888 9
Q ss_pred hHHHHHHHHHHHHhchh---c---CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 198 KLLQSLKAYQNAEKDER---M---KSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~---~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
+++.|+.+.+.|++... . -.....+..++..+..++++..|+...+..+.+
T Consensus 1072 e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1072 EADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99999999999997321 1 123455788888888999999988887777664
No 312
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.88 E-value=1.5 Score=39.17 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
|+|.++.-+-.=..+. .| ++.++..+|.++....+|.+|..++..
T Consensus 476 gey~kc~~ys~WL~~i--aP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 476 GEYHKCYLYSSWLTKI--AP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccHHHHHHHHHHHHHh--CC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 6666666555544442 25 666666666666666667666666654
No 313
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=2.6 Score=37.21 Aligned_cols=167 Identities=13% Similarity=0.098 Sum_probs=124.0
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh------------CChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK------------GDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
..|.|+.++++.=.+.+..+|+...+|...=.++... .-.++-+.+...+++.+|+. .+|+.+..++
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L 119 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVL 119 (421)
T ss_pred hccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4566667788888888888998877776554443322 24667788899999999999 9999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
.+.+. -++..-++.+.++++.+|.+-.+|...-.+.... .. ......+=+++..++|..+ +.|-.+|
T Consensus 120 ~~~p~------~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~-~~----~~~~~~~El~ftt~~I~~n--fSNYsaW 186 (421)
T KOG0529|consen 120 QKNPH------SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA-ER----SRNLEKEELEFTTKLINDN--FSNYSAW 186 (421)
T ss_pred HhCCC------chHHHHHHHHHHHHhcCcccccchHHHHHHHHHH-hc----ccccchhHHHHHHHHHhcc--chhhhHH
Confidence 87764 2588889999999999999999998877766544 00 1123566678888998855 8899999
Q ss_pred hhHHHHHHH------hh------cHHHHHHHHHHHHhcCCCCcHH
Q 020060 223 FNCATVNKY------LE------NYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 223 ~~la~~~~~------~g------~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+...++.. .| -...-+..-..|+-.+|++...
T Consensus 187 hyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~ 231 (421)
T KOG0529|consen 187 HYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSC 231 (421)
T ss_pred HHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccce
Confidence 888887762 23 1334456677777889988765
No 314
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.80 E-value=0.47 Score=36.14 Aligned_cols=101 Identities=7% Similarity=-0.144 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.+++...+...--+.|+.+..-..-|.+++.. |++.+|+..++.+.... |..+.+--.++.|++.+|+
T Consensus 25 ~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r---------~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 25 DPDDAEALLDALRVLRPEFPELDLFDGWLHIVR---------GDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD 93 (160)
T ss_pred ChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh---------CCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence 577888888877778999999999999999998 99999999999988744 8889888999999999998
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 020060 235 YERALSGFEASALKDPSLNATEEVQMMVNLLDKI 268 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~ 268 (331)
+.= ..+-..++...+ ++....+...+......
T Consensus 94 ~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 94 PSW-RRYADEVLESGA-DPDARALVRALLARADL 125 (160)
T ss_pred hHH-HHHHHHHHhcCC-ChHHHHHHHHHHHhccc
Confidence 753 122233444444 34444444444444333
No 315
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.69 E-value=1.2 Score=32.75 Aligned_cols=77 Identities=16% Similarity=0.111 Sum_probs=52.8
Q ss_pred CCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-CCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 129 GPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-LDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
+++-...+++++++..-. ...+..+.+.+++..++ ..|. ..+..+.|+..+... ++|+.++.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~-----~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRl---------keY~~s~~yv 94 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSR-----DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRL---------KEYSKSLRYV 94 (149)
T ss_pred cchHHHHHHHHHHHHccc-----chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHH---------hhHHHHHHHH
Confidence 444466777777776543 34567788888888876 3343 345667778888877 8888888888
Q ss_pred HHHHhchhcCCChhH
Q 020060 207 QNAEKDERMKSNPDL 221 (331)
Q Consensus 207 ~~al~~~~~~~~~~~ 221 (331)
+..+... |+|..+
T Consensus 95 d~ll~~e--~~n~Qa 107 (149)
T KOG3364|consen 95 DALLETE--PNNRQA 107 (149)
T ss_pred HHHHhhC--CCcHHH
Confidence 8888744 777655
No 316
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=0.25 Score=44.66 Aligned_cols=99 Identities=17% Similarity=0.030 Sum_probs=81.4
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh---CChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK---GDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
+..-|+-.+..+.. ..|+..|.+++...|.....+.+.+.+++.. |+.-.|+.-...+++++|.. .+++.++.++
T Consensus 377 ~~~egnd~ly~~~~-~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL 455 (758)
T KOG1310|consen 377 FKTEGNDGLYESIV-SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARAL 455 (758)
T ss_pred HHhhccchhhhHHH-HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHH
Confidence 33344444444554 7899999999999999999999999888875 67778899999999999998 9999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
..++ ++.+|+.+...+....|.+.
T Consensus 456 ~el~--------r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 456 NELT--------RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred HHHh--------hHHHhhhhHHHHhhcCchhh
Confidence 9875 69999999998888888543
No 317
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.56 E-value=0.14 Score=28.19 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHH--HHHHHhcCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNC--FNLALSKGPN 131 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~~~ 131 (331)
+.++.+|..+...|++++|+.. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4677788888888888888888 4466666654
No 318
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.42 E-value=1.8 Score=33.49 Aligned_cols=139 Identities=10% Similarity=-0.049 Sum_probs=88.0
Q ss_pred HHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH--
Q 020060 108 CIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN-- 182 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-- 182 (331)
-....+..++|+..|...-+-.-.. -+.+..+.+....| +...|+..|.++-...| .|.....++.
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kg--------dta~AV~aFdeia~dt~-~P~~~rd~ARlr 137 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKG--------DTAAAVAAFDEIAADTS-IPQIGRDLARLR 137 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcc--------cHHHHHHHHHHHhccCC-CcchhhHHHHHH
Confidence 3445677888888887765554443 44555677776554 58899999988766443 3444333322
Q ss_pred -HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHH
Q 020060 183 -ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQM 260 (331)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~ 260 (331)
.|... +.|.|++.....+..-. +..|-...+.-.||..-++.|++..|.++|.+... +...+.. .+.+.
T Consensus 138 aa~lLv-------D~gsy~dV~srvepLa~-d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq 208 (221)
T COG4649 138 AAYLLV-------DNGSYDDVSSRVEPLAG-DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQ 208 (221)
T ss_pred HHHHHh-------ccccHHHHHHHhhhccC-CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHH
Confidence 22222 44888887666654432 11244446678899999999999999999999877 4444443 55555
Q ss_pred HHHH
Q 020060 261 MVNL 264 (331)
Q Consensus 261 ~~~~ 264 (331)
+...
T Consensus 209 ~mld 212 (221)
T COG4649 209 IMLD 212 (221)
T ss_pred HHHH
Confidence 5443
No 319
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.42 E-value=0.089 Score=42.25 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++.+.|.+.|.+++.+. |.....|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus 9 ~D~~aaaely~qal~la--p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 9 GDAEAAAELYNQALELA--PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CChHHHHHHHHHHhhcC--chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 89999999999999955 999999999999999999999999999999999998654
No 320
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.37 E-value=0.18 Score=34.96 Aligned_cols=57 Identities=21% Similarity=0.183 Sum_probs=46.1
Q ss_pred hcccccHHHHHHHHHHHHhcCCC---------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPS---------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
...|+| .+|++.+.+....... ...++.++|.++...|++++|+..+++++++....
T Consensus 9 ~~~~dy-~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDY-SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCH-HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456888 8898888887765321 24577889999999999999999999999887655
No 321
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.95 E-value=0.92 Score=35.31 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=24.4
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH----HHHHHHHHhhhhhhhHHHHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLL----DKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l----~~~~~a~~~~~~a~~l~~~~ 285 (331)
..+.+.|.++-.+|-+++ ++.+ .++++.+..= .+-.+|.+.-..|+++...+
T Consensus 181 ~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 181 SKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 355666666666655443 3333 4444444221 22344445555555554443
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.80 E-value=6.5 Score=37.63 Aligned_cols=234 Identities=12% Similarity=0.002 Sum_probs=122.7
Q ss_pred hhHHHHHHHHHHhcCCC-CCCCC--Cc------------chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC---CC-
Q 020060 37 KLQNESDLALRLLGSVP-PEQRK--SP------------TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN---PS- 97 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~-~~~~~--~~------------~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~---p~- 97 (331)
..++-++++++.+++.. ..... .+ .-...+.+..+......+++ ..|...+....... |.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~ 397 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW-SKATQELEFMRQLCQRSPSK 397 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHHHhcCccc
Confidence 44566677777776655 11111 00 11233455667777788997 88888888766542 22
Q ss_pred -----cHHHHHHHHHHHHHhCChhHHHHHHH--------HHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 98 -----LADAWLCLGSCIWKKGDLPAAKNCFN--------LALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 98 -----~~~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
.+..++..|..+...|+.+.|..+|. .+....+.. -+..++..++...+..... -.++.
T Consensus 398 ~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~----~~~~~ 473 (608)
T PF10345_consen 398 LYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDS----ESELN 473 (608)
T ss_pred hhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchh----hhHHH
Confidence 37788999999999999999999998 444555554 2334455555544320000 00133
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-hcCCCh----hHHhhHHHHHHHhhcH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-RMKSNP----DLYFNCATVNKYLENY 235 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~----~~~~~la~~~~~~g~~ 235 (331)
..+...-....+.+..++..+..+....+... .+-...++...+..+++.- ...++. -++..++..++ .|+.
T Consensus 474 ~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~ 550 (608)
T PF10345_consen 474 ELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF--EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDV 550 (608)
T ss_pred HHHHhcCccccCCccHHHHHHHHHHHHHHhhC--CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCH
Confidence 33332222212233333333333332111110 1122336666666666532 112222 22556666666 6888
Q ss_pred HHHHHHHHHHHhcCCCC---cHHH-------HHHHHHHHHHHHHHHHHhhhhh
Q 020060 236 ERALSGFEASALKDPSL---NATE-------EVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~---~~~~-------~l~~~~~~l~~~~~a~~~~~~a 278 (331)
.+.......++.+.+.. .... .+...+...|+.+++.....+.
T Consensus 551 ~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 551 GEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 88777777777654443 3332 2333345556666655444443
No 323
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.78 E-value=0.091 Score=26.49 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=21.6
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
|.+.+.+|.++...|++++|...++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3467889999999999999998876
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.75 E-value=0.099 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFN 123 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~ 123 (331)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456777888888888888877665
No 325
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.73 E-value=3.4 Score=34.44 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=100.8
Q ss_pred ccHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhH---HHHHHH
Q 020060 79 EYRKDAEDHLSKAVKLNPSLA----DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQL---SMLERS 144 (331)
Q Consensus 79 ~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l---~~~~~~ 144 (331)
+ .++|+..|++++++.+... .++..+-.+++.+|+|++-+..|.+.+..-... .....+ ...-.+
T Consensus 42 ~-p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 E-PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred C-HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 5 4899999999999988754 467778889999999999999998887542211 111111 111111
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH----HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh---cCC
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY----NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER---MKS 217 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~ 217 (331)
++. -..-|+..+..++.| .+...|+ .||.+|+.. ++|.+-...+.+.-..+. ..+
T Consensus 121 m~L----LQ~FYeTTL~ALkdA-----KNeRLWFKTNtKLgkl~fd~---------~e~~kl~KIlkqLh~SCq~edGed 182 (440)
T KOG1464|consen 121 MDL----LQEFYETTLDALKDA-----KNERLWFKTNTKLGKLYFDR---------GEYTKLQKILKQLHQSCQTEDGED 182 (440)
T ss_pred hHH----HHHHHHHHHHHHHhh-----hcceeeeeccchHhhhheeH---------HHHHHHHHHHHHHHHHhccccCch
Confidence 110 111233344444333 3444453 578888766 777655444444332110 011
Q ss_pred C-------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHH-------HHHHHHHHHHHHHHH
Q 020060 218 N-------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEV-------QMMVNLLDKIENLLK 273 (331)
Q Consensus 218 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l-------~~~~~~l~~~~~a~~ 273 (331)
+ .++|..--.+|-.+.+-..-...|++++.+...-+.+..+ |....+-|++++|..
T Consensus 183 D~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 183 DQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 1 1335555566777777777778899999876654443222 234455566655553
No 326
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=4.3 Score=37.57 Aligned_cols=127 Identities=14% Similarity=-0.022 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLC--LGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEE 158 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~ 158 (331)
..++..+...+.++|.++..+.. +...+...++...+.-.+..++..+|.+ .+..+++......| ..+.-
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~-------~~~~~ 120 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG-------LQFLA 120 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh-------hHHHH
Confidence 44777777777888888776433 4677777888889999999999999998 88888888877655 24555
Q ss_pred HHHHHHHHhcCCCCCchhHHHH------HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNL------GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la 226 (331)
+......+....|++......+ +.....+ |+..++....+++.... |.++.+...+.
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~l~~~~d~~--p~~~~~~~~~~ 183 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLL---------GRTAEAELALERAVDLL--PKYPRVLGALM 183 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhh--hhhhhhHhHHH
Confidence 5556666888888888777666 5555545 66677777777777644 77765543333
No 327
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.48 E-value=4.8 Score=35.62 Aligned_cols=133 Identities=15% Similarity=0.035 Sum_probs=91.1
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------------CC------------Cc---HHHHHHHHHHHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------------NP------------SL---ADAWLCLGSCIWK 111 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~lg~~~~~ 111 (331)
+-....+..++.++...|++ ..|.+++++|+=. ++ .+ -.+.+.......+
T Consensus 37 PyHidtLlqls~v~~~~gd~-~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDH-AQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 46678899999999999996 8888888887632 11 11 2245566677889
Q ss_pred hCChhHHHHHHHHHHhcCCC-h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC-----CCchhHHHHHHH
Q 020060 112 KGDLPAAKNCFNLALSKGPN-K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV-----KDGNSWYNLGNA 183 (331)
Q Consensus 112 ~g~~~~A~~~~~~al~~~~~-~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~ 183 (331)
.|-+.-|.++.+-.+.++|. + .+++.+-....+- ++++--+..++....... .-|..-+..+.+
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs--------~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRS--------RQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhc--------CCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 99999999999999999999 4 3444333333322 346666666665444211 134566677777
Q ss_pred HHhhhhhcCCCChhhH---------------HHHHHHHHHHHh
Q 020060 184 CLTSFFVTGSWDHSKL---------------LQSLKAYQNAEK 211 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~---------------~~A~~~~~~al~ 211 (331)
+... ++- +.|-..+.+|+.
T Consensus 188 ~~~l---------~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YFRL---------EKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHh---------cCccccccccccccccchhHHHHHHHHHHH
Confidence 7766 444 788888888885
No 328
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=6.3 Score=36.54 Aligned_cols=120 Identities=16% Similarity=0.072 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCCh-HHHhh--HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 117 AAKNCFNLALSKGPNK-KILCQ--LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~-~~~~~--l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
-++..+...+.+++.+ ..+.. ++..+..++ ....+.-....++..+|+++.+..+|+.+....
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~------ 114 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLA--------DSTLAFLAKRIPLSVNPENCPAVQNLAAALELD------ 114 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccc--------cchhHHHHHhhhHhcCcccchHHHHHHHHHHHh------
Confidence 3566666666777777 33222 455555554 366888888999999999999999999998876
Q ss_pred CChhhHHHHHHHH-HHHHhchhcCCChhHHh------hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 194 WDHSKLLQSLKAY-QNAEKDERMKSNPDLYF------NCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 194 ~~~~~~~~A~~~~-~~al~~~~~~~~~~~~~------~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|....++..+ +.+... .|.+..... .++.....+|+..++.....++..+.|.++..
T Consensus 115 ---~~~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 115 ---GLQFLALADISEIAEWL--SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred ---hhHHHHHHHHHHHHHhc--CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 5555554444 446663 377776633 35888889999999999999999999988653
No 329
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.43 E-value=0.27 Score=27.06 Aligned_cols=33 Identities=12% Similarity=0.041 Sum_probs=25.9
Q ss_pred hHHhhHHHHHHHhhcHHHHHHH--HHHHHhcCCCC
Q 020060 220 DLYFNCATVNKYLENYERALSG--FEASALKDPSL 252 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~--~~~al~~~~~~ 252 (331)
+.++.+|..+..+|++++|+.. |+-+..+++.+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678899999999999999999 54777777653
No 330
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.41 E-value=5.7 Score=35.71 Aligned_cols=51 Identities=8% Similarity=-0.086 Sum_probs=41.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
|..++..|+|.++.-+-.=..++.| ++.+ .-+|.++....++.+|.+.+.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4456788999999988888888999 4555 8899999999999999866544
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.21 E-value=3.7 Score=37.37 Aligned_cols=123 Identities=15% Similarity=0.232 Sum_probs=67.8
Q ss_pred cccccHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLA-DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
..+++ +++...... -.+-|.-+ .-...++..+...|-++.|+. ...+....+.++. .+ |
T Consensus 273 ~~~d~-~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~-------~~~D~~~rFeLAl---~l--------g 332 (443)
T PF04053_consen 273 LRGDF-EEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQ-------FVTDPDHRFELAL---QL--------G 332 (443)
T ss_dssp HTT-H-HH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHH-------HSS-HHHHHHHHH---HC--------T
T ss_pred HcCCh-hhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHh-------hcCChHHHhHHHH---hc--------C
Confidence 45676 666665541 12223333 334555666666776655554 4444455555554 33 3
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+++.|.+..+ ..+++..|..||...+.. |+++-|..+|+++-. +..+..+|...|+
T Consensus 333 ~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~---------g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 333 NLDIALEIAK-----ELDDPEKWKQLGDEALRQ---------GNIELAEECYQKAKD----------FSGLLLLYSSTGD 388 (443)
T ss_dssp -HHHHHHHCC-----CCSTHHHHHHHHHHHHHT---------TBHHHHHHHHHHCT-----------HHHHHHHHHHCT-
T ss_pred CHHHHHHHHH-----hcCcHHHHHHHHHHHHHc---------CCHHHHHHHHHhhcC----------ccccHHHHHHhCC
Confidence 5777777653 334778999999999988 999999999998754 3345555666666
Q ss_pred HHHHHHHH
Q 020060 235 YERALSGF 242 (331)
Q Consensus 235 ~~~A~~~~ 242 (331)
.+.=.+..
T Consensus 389 ~~~L~kl~ 396 (443)
T PF04053_consen 389 REKLSKLA 396 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54433333
No 332
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.14 E-value=0.53 Score=37.31 Aligned_cols=65 Identities=15% Similarity=0.082 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHHHhcc
Q 020060 82 KDAEDHLSKAVKLN-PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLERSMAQ 147 (331)
Q Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~~~g~ 147 (331)
+.|...|-++-... -++++..+.+|..|. ..+.++|+..+.+++++.+.+ ..+..++.++..+|+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 56777776654332 245777788887665 567888888888888876443 667778888887764
No 333
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.10 E-value=0.35 Score=40.89 Aligned_cols=62 Identities=16% Similarity=0.091 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
|..+|.+|+.+.|.++..|+.||.++... |+.-.|+-+|-+++-.. ...+.+..|+...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~---------~~~l~avy~y~Rsl~~~--~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQ---------GDDLDAVYYYIRSLAVR--IPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHT---------T-HHHHHHHHHHHHSSS--B--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccc---------cchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999988 99999999999999632 3347778888887777
No 334
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.10 E-value=0.19 Score=28.01 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+++..||.+....++|++|+.-|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888888888888888887653
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.97 E-value=1.5 Score=28.99 Aligned_cols=61 Identities=10% Similarity=-0.048 Sum_probs=42.7
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSLNAT----EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
..-|.-++..++.++|+..++++++..++.+.. ..+..++...|++.+.++.-.....+..
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ 74 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAE 74 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667788888999999998888776664 4445677788888888776555444443
No 336
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=5 Score=34.61 Aligned_cols=175 Identities=15% Similarity=0.095 Sum_probs=104.2
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHh----cC--CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVK----LN--PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~----~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+...|+..++| .+|+......++ ++ +...+++..=..+|+...+..+|...+..|-.....- -.-..-|.+
T Consensus 133 rli~Ly~d~~~Y-teAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 133 RLIRLYNDTKRY-TEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 456677888888 888877666554 22 2235566666777888888888888777664332211 111123333
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCC---CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVK---DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
-..-|-...+. ++|..|..+|-+|++-... +..+...|-..++..-+.. .-+--.++-.-..+++. ...+
T Consensus 212 DLqSGIlha~e-kDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln----~~ddv~~lls~K~~l~y--~g~~ 284 (411)
T KOG1463|consen 212 DLQSGILHAAE-KDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLN----LPDDVAALLSAKLALKY--AGRD 284 (411)
T ss_pred HHhccceeecc-cccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhc----CHHHHHHHHhhHHHHhc--cCcc
Confidence 44444444434 6799999999999985432 2344333332222210000 02323344444455553 3667
Q ss_pred hhHHhhHHHHHH--HhhcHHHHHHHHHHHHhcCCC
Q 020060 219 PDLYFNCATVNK--YLENYERALSGFEASALKDPS 251 (331)
Q Consensus 219 ~~~~~~la~~~~--~~g~~~~A~~~~~~al~~~~~ 251 (331)
.++....+.++. .+.+|+.|+.-|..-+..||-
T Consensus 285 i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 285 IDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 777777877776 568899999999998877775
No 337
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.84 E-value=8 Score=35.90 Aligned_cols=174 Identities=11% Similarity=-0.018 Sum_probs=124.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSML 141 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~ 141 (331)
...|......-...|++ ....-.|.+++-......+.|...+.-....|+.+-|-..+.++.++.... .....-+..
T Consensus 297 l~nw~~yLdf~i~~g~~-~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDF-SRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccH-HHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 33455555566678997 899999999998888889999999999999999999999999999887554 344444444
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH---HHHHHHHhchhcCC-
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL---KAYQNAEKDERMKS- 217 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~---~~~~~al~~~~~~~- 217 (331)
.-..| ++..|...++......|+...+-..-....... |+.+.+. +.+.........+.
T Consensus 376 ~e~~~--------n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~---------~~~~~~~~~~~l~s~~~~~~~~~~i 438 (577)
T KOG1258|consen 376 EESNG--------NFDDAKVILQRIESEYPGLVEVVLRKINWERRK---------GNLEDANYKNELYSSIYEGKENNGI 438 (577)
T ss_pred HHhhc--------cHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh---------cchhhhhHHHHHHHHhcccccCcch
Confidence 44444 699999999999887788777666555555556 7777776 33333332110111
Q ss_pred ChhHHhhHHHH-HHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 218 NPDLYFNCATV-NKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 218 ~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
....+...+.. +.-.++.+.|...+.++....|++...
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 12234555554 345688999999999999999998764
No 338
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.79 E-value=7.1 Score=35.13 Aligned_cols=192 Identities=10% Similarity=0.103 Sum_probs=98.0
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---------------
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK--------------- 128 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------------- 128 (331)
+.+|+.....+...++ .+.|+....+++...|. ....++.+|....+-++-..+|.++.+-
T Consensus 302 ~evw~dys~Y~~~isd-~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~ 377 (660)
T COG5107 302 EEVWFDYSEYLIGISD-KQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASK 377 (660)
T ss_pred HHHHHHHHHHHhhccH-HHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhcc
Confidence 3445544445555566 36676666666666555 4455666666655555555555554321
Q ss_pred ---CCCh--H-----------HHhh-HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHhhhhh
Q 020060 129 ---GPNK--K-----------ILCQ-LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA-CLTSFFV 190 (331)
Q Consensus 129 ---~~~~--~-----------~~~~-l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~~~~~ 190 (331)
+|.. . +|+. +-.+...-| .+.|...|-++-+..--...++..-+.+ +...
T Consensus 378 ~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G---------l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~--- 445 (660)
T COG5107 378 VDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG---------LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT--- 445 (660)
T ss_pred ccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh---------HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc---
Confidence 0100 0 1111 111111111 5666666666654432222233222222 2223
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIEN 270 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~ 270 (331)
|++.-|...|+-.+. ..|+++..-...-..+...++-..|...|+.++..-.+. .+..++..+-.++.
T Consensus 446 ------~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~----q~k~iy~kmi~YEs 513 (660)
T COG5107 446 ------GDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT----QLKRIYDKMIEYES 513 (660)
T ss_pred ------CCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh----hhhHHHHHHHHHHH
Confidence 777788888887777 337776666666666777788888888888776533222 23344444444444
Q ss_pred HHHhhhhhhhHHH
Q 020060 271 LLKGHAKTKRVAS 283 (331)
Q Consensus 271 a~~~~~~a~~l~~ 283 (331)
-......+..+..
T Consensus 514 ~~G~lN~v~sLe~ 526 (660)
T COG5107 514 MVGSLNNVYSLEE 526 (660)
T ss_pred hhcchHHHHhHHH
Confidence 4444444433333
No 339
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.77 E-value=0.63 Score=39.13 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=53.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
....++..++..+...|++ +.+++.+++.+..+|.+-.+|..+-..|...|+...|+..|++.-..
T Consensus 151 ~~~~~l~~lae~~~~~~~~-~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRA-DAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccH-HHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3455666677778888887 88888888888888888888888888888888888888888887653
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.64 E-value=0.26 Score=27.50 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=24.2
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+++..+|.+-...++|++|+.-|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 457778888888888888888888888753
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.62 E-value=1.9 Score=38.85 Aligned_cols=123 Identities=12% Similarity=0.119 Sum_probs=90.8
Q ss_pred HHhCChhHHHHHHHHHHhcCCChHH-HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNKKI-LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
+..|+...|-.-...++...|.... ....+.+...+| .|+.+...+..+-..-..-..+..-+-.....+
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg--------~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l- 370 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLG--------YYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL- 370 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhh--------hHHHHHHHhhchhhhhcCCchHHHHHHHhhhch-
Confidence 4568888888888888888888733 344677777776 599998888766554333334444444445556
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
|++++|.....-.+... -.++++..--+.....+|-+++|..++++.+.++|.
T Consensus 371 --------~r~~~a~s~a~~~l~~e--ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 371 --------ARWREALSTAEMMLSNE--IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred --------hhHHHHHHHHHHHhccc--cCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 89999999888888744 677887777777778889999999999999998875
No 342
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.60 E-value=1.6 Score=32.74 Aligned_cols=78 Identities=15% Similarity=0.036 Sum_probs=62.0
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~ 147 (331)
.....-...++. +++...+.-.--+.|+.+..-..-|.++...|++.+|+..|+....-.+.. ...-.++.|+..+|+
T Consensus 15 ~~~~~aL~~~d~-~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 15 EVLMYALRSADP-YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHHhcCCH-HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333333446775 888888888888999999999999999999999999999999998877665 445557777777764
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.51 E-value=1.3 Score=29.14 Aligned_cols=62 Identities=19% Similarity=0.077 Sum_probs=46.4
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHH---HHHHHhCChhHHHHHHHHHHhc
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLG---SCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~ 128 (331)
-....|.-++...+. ++|+..++++++..++.++-+..+| .+|...|+|.+++.+-.+=+.+
T Consensus 8 ~~ie~GlkLY~~~~~-~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNET-QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchH-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677784 9999999999998888776666555 5678889999988887665544
No 344
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=4.6 Score=35.69 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC--hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD--LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEE 158 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~ 158 (331)
++-+.+...++..+|+...+|+.+..++.+.+. +..-+...+++++.+|.+ .+|...-.+...... ......+
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~----~~~~~~~ 167 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER----SRNLEKE 167 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc----ccccchh
Confidence 566788889999999999999999999987654 678899999999999998 666554433332211 1112556
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC---CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 159 SIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS---WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 159 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
-+++..+++..++.+..+|.+...++..+.-.... +.......-++.-..++- .+|.|..+|+..-+.+.
T Consensus 168 El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiF--Tdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 168 ELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIF--TDPEDQSCWFYHRWLLG 240 (421)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHh--cCccccceeeehHHhhc
Confidence 78889999999999999999998887754211110 011233444555566666 44999999877444443
No 345
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.38 E-value=0.59 Score=39.53 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNL 264 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~ 264 (331)
|..+|.+|+... |.+...|+.+|.++...|+.-.|+-+|-+++....-.+.+ .++..++..
T Consensus 1 A~~~Y~~A~~l~--P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--CCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 678999999955 9999999999999999999999999999999765555555 888877777
No 346
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=13 Score=37.19 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
..+.|.++.++. +.+.+|..+|.+.+.. |...+|++.|-+ .++|..|...-.+....|.
T Consensus 1090 ~ldRA~efAe~~-----n~p~vWsqlakAQL~~---------~~v~dAieSyik-------adDps~y~eVi~~a~~~~~ 1148 (1666)
T KOG0985|consen 1090 SLDRAYEFAERC-----NEPAVWSQLAKAQLQG---------GLVKDAIESYIK-------ADDPSNYLEVIDVASRTGK 1148 (1666)
T ss_pred hHHHHHHHHHhh-----CChHHHHHHHHHHHhc---------CchHHHHHHHHh-------cCCcHHHHHHHHHHHhcCc
Confidence 355555555443 4678899999988877 899999988854 5677888888888889999
Q ss_pred HHHHHHHHHHHHhcCC
Q 020060 235 YERALSGFEASALKDP 250 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~ 250 (331)
|++-++++..+.+...
T Consensus 1149 ~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1149 YEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999888888876543
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.28 E-value=2.1 Score=32.15 Aligned_cols=71 Identities=7% Similarity=-0.171 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.+++...+...--+.|+.+..-..-|.++... |++.+|+..++...... +..+-.--.++.|++.+||
T Consensus 25 d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~r---------g~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 25 DPYDAQAMLDALRVLRPNLKELDMFDGWLLIAR---------GNYDEAARILRELLSSA--GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred CHHHHHHHHHHHHHhCCCccccchhHHHHHHHc---------CCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcCC
Confidence 477777777776677899999988899999988 99999999999888743 6667777788888888888
Q ss_pred HH
Q 020060 235 YE 236 (331)
Q Consensus 235 ~~ 236 (331)
.+
T Consensus 94 p~ 95 (153)
T TIGR02561 94 AE 95 (153)
T ss_pred hH
Confidence 65
No 348
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.28 E-value=0.32 Score=41.00 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=59.7
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh-HHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ-LSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~-l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
.|.++....|+++..|...+..-...|.+.+--..|.++++..|.+ +.|.. -+.-+... ++++.+...+.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~--------ani~s~Ra~f~ 166 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI--------ANIESSRAMFL 166 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhh--------ccHHHHHHHHH
Confidence 3445555567778888777777777778888888888888888888 55544 22223322 35888888888
Q ss_pred HHhcCCCCCchhHHH
Q 020060 165 EAITLDVKDGNSWYN 179 (331)
Q Consensus 165 ~al~~~p~~~~~~~~ 179 (331)
++++.+|++|..|..
T Consensus 167 ~glR~N~~~p~iw~e 181 (435)
T COG5191 167 KGLRMNSRSPRIWIE 181 (435)
T ss_pred hhhccCCCCchHHHH
Confidence 888888888887754
No 349
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.23 E-value=2.3 Score=42.91 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=104.6
Q ss_pred HHHHHHHHHhCChhHHHH------HHHHHH-hcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----
Q 020060 103 LCLGSCIWKKGDLPAAKN------CFNLAL-SKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----- 169 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~------~~~~al-~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----- 169 (331)
...|......|.+.+|.+ .+.+.. .+.|.. ..+..++.++..+| +.++|+....++.-+
T Consensus 936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~--------d~~~Ai~~~~ka~ii~eR~~ 1007 (1236)
T KOG1839|consen 936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLG--------DNQEAIAQQRKACIISERVL 1007 (1236)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhc--------chHHHHHhcccceeeechhc
Confidence 445555566677777766 444332 234444 67788888888876 488898888877643
Q ss_pred ---CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch------hcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 170 ---DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE------RMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 170 ---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
.|+....+.+++...+.. +....|+..+.++..+. ..|.-.....+++.++...++++.|+.
T Consensus 1008 g~ds~~t~~~y~nlal~~f~~---------~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1008 GKDSPNTKLAYGNLALYEFAV---------KNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred cCCCHHHHHHhhHHHHHHHhc---------cCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 234455677777766666 67778888888887621 124444557899999999999999999
Q ss_pred HHHHHHhcCCCCcH-H-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 241 GFEASALKDPSLNA-T-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 241 ~~~~al~~~~~~~~-~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+.+.|+.....-.. . ..-+.++..+.+..++.+.+..+..
T Consensus 1079 ~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1079 YLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHH
Confidence 99999986543222 1 3334444444444444444444443
No 350
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=92.15 E-value=1.9 Score=36.54 Aligned_cols=82 Identities=12% Similarity=0.089 Sum_probs=67.9
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh-HHHHHHHhhcHHHHHHH
Q 020060 163 AKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN-CATVNKYLENYERALSG 241 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~ 241 (331)
+.++....|+++..|...+.-.... +-+.+--..|..+++.. |.|.+.|.. -+.-+...++++.+...
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~---------k~y~~~~nI~~~~l~kh--P~nvdlWI~~c~~e~~~~ani~s~Ra~ 164 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKK---------KMYGEMKNIFAECLTKH--PLNVDLWIYCCAFELFEIANIESSRAM 164 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHH---------HHHHHHHHHHHHHHhcC--CCCceeeeeeccchhhhhccHHHHHHH
Confidence 3444556788999998887766666 88888889999999955 999999977 56667788999999999
Q ss_pred HHHHHhcCCCCcHH
Q 020060 242 FEASALKDPSLNAT 255 (331)
Q Consensus 242 ~~~al~~~~~~~~~ 255 (331)
|.++++++|+++..
T Consensus 165 f~~glR~N~~~p~i 178 (435)
T COG5191 165 FLKGLRMNSRSPRI 178 (435)
T ss_pred HHhhhccCCCCchH
Confidence 99999999998863
No 351
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=91.84 E-value=2.2 Score=37.82 Aligned_cols=58 Identities=12% Similarity=0.026 Sum_probs=51.7
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
.-.+..||..+++.+.|+.+-.+++.++|..... ...+.++..+.++.+|.+.+.-|.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999888 999999999999999987665554
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.79 E-value=2.4 Score=35.64 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=50.0
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
.+...+..|...|.+ .+|+++.++++.++|-+...+..+-.++...||--.+...|++-
T Consensus 281 llgkva~~yle~g~~-neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKP-NEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCCh-HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344456777788997 89999999999999999999999999999999988888877765
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.77 E-value=3.6 Score=38.49 Aligned_cols=84 Identities=19% Similarity=0.119 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 154 EIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
++|..+++.|...+..-|.+ .....+++.||+.+ .+.+.|.++++.|-+-+ |.++-....+-.
T Consensus 368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L---------~QLD~A~E~~~EAE~~d--~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL---------EQLDNAVEVYQEAEEVD--RQSPLCQLLMLQ 436 (872)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHhhc--cccHHHHHHHHH
Confidence 56899999999888866654 34667888999988 89999999999998844 888888777878
Q ss_pred HHHHhhcHHHHHHHHHHHHhc
Q 020060 228 VNKYLENYERALSGFEASALK 248 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~ 248 (331)
+...-|.-++|+.........
T Consensus 437 ~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcchHHHHHHHHHHHhh
Confidence 888888888888887776654
No 354
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.73 E-value=6.2 Score=42.65 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=102.0
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CC-------
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-PN------- 131 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------- 131 (331)
....+.+|...|++....|++ +.|..++-+|.+.. -+.++...|...+..|+-..|+..+++.+..+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~-q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~ 1742 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHL-QRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTD 1742 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccH-HHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccc
Confidence 456788999999999999997 99999999998876 57889999999999999999999999999654 33
Q ss_pred ---hH-------HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc---CCCChhh
Q 020060 132 ---KK-------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT---GSWDHSK 198 (331)
Q Consensus 132 ---~~-------~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~---~~~~~~~ 198 (331)
.. +...++.-....|+ -...+-++.|..+.+..|.....++.+|.-|....... +.-..|+
T Consensus 1743 ~p~~~n~~i~~~~~L~~~~~~~es~n------~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~ 1816 (2382)
T KOG0890|consen 1743 TPQSVNLLIFKKAKLKITKYLEESGN------FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGR 1816 (2382)
T ss_pred cchhhhhhhhhhHHHHHHHHHHHhcc------hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccccccc
Confidence 11 11122222222221 12556788999999999988888888886555432211 1112355
Q ss_pred HHH---HHHHHHHHHh
Q 020060 199 LLQ---SLKAYQNAEK 211 (331)
Q Consensus 199 ~~~---A~~~~~~al~ 211 (331)
+.. ++..|.+++.
T Consensus 1817 ~~~~l~~~~~~~~sl~ 1832 (2382)
T KOG0890|consen 1817 VLSLLKAIYFFGRALY 1832 (2382)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 555 6777778875
No 355
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.69 E-value=1.1 Score=37.24 Aligned_cols=70 Identities=13% Similarity=-0.036 Sum_probs=61.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.-.+...++-..+...+++ +.|..+..+.+.++|.++.-+...|.+|.+.|.+..|+..+...++.-|+.
T Consensus 179 il~rll~~lk~~~~~e~~~-~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~ 248 (269)
T COG2912 179 ILSRLLRNLKAALLRELQW-ELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDD 248 (269)
T ss_pred HHHHHHHHHHHHHHHhhch-HHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCc
Confidence 3345555666677788887 999999999999999999999999999999999999999999999999988
No 356
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.52 E-value=10 Score=34.18 Aligned_cols=182 Identities=13% Similarity=0.115 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
-.+.+++...|-.++.|+.-...+...++-+.|+...++++...|. ..+.++.++-... ..+...+-|+...+.+.+
T Consensus 289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps--L~~~lse~yel~n-d~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS--LTMFLSEYYELVN-DEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc--hheeHHHHHhhcc-cHHHHhhhHHHHHHHHHH
Confidence 4567777778888999999888889999999999999999988887 3333444443221 111122334444444333
Q ss_pred HhcC-----------CCCC-chhH------HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 166 AITL-----------DVKD-GNSW------YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 166 al~~-----------~p~~-~~~~------~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
-... +|.. ++.. +.++.|.......-. .-.+.|...|-++-+.. -..+++|..-|.
T Consensus 366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~----~Gl~aaR~~F~k~rk~~--~~~h~vyi~~A~ 439 (660)
T COG5107 366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRK----RGLEAARKLFIKLRKEG--IVGHHVYIYCAF 439 (660)
T ss_pred HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHH----hhHHHHHHHHHHHhccC--CCCcceeeeHHH
Confidence 2211 1110 1111 112222221111000 45677888888877633 345566655555
Q ss_pred H-HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 228 V-NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 228 ~-~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
+ |...|++.-|...|+-.+...|+.+.. ...-..+..+++-..|...|.
T Consensus 440 ~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 440 IEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 5 567899999999999999999998876 666666666666666655444
No 357
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.71 E-value=3 Score=37.01 Aligned_cols=89 Identities=15% Similarity=0.040 Sum_probs=64.4
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCC--------C-----c-----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNP--------S-----L-----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p--------~-----~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 130 (331)
.-|..++..+.| ..|.--|..++++.. . + ....-.+..||...++.+-|+....+.+-++|
T Consensus 181 ~das~~yrqk~y-a~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 181 KDASSCYRQKKY-AVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHhhHHH-HHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 335566677777 777777777777632 1 1 12345688999999999999999999999999
Q ss_pred Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 131 NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 131 ~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
.. ..+...+.+.+.+. +|.+|...+.-+
T Consensus 260 ~~frnHLrqAavfR~Le--------Ry~eAarSamia 288 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLE--------RYSEAARSAMIA 288 (569)
T ss_pred chhhHHHHHHHHHHHHH--------HHHHHHHHHHHH
Confidence 98 66777777777663 566666555444
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.46 E-value=7.7 Score=30.91 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=47.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC----cHHHHHHHHHHHHHhCChhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS----LADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+...+.+|..|.. .+ .++++.++.+++++.+. +++.+..|+.+|...|+++.|-
T Consensus 139 ~t~elq~aLAtyY~k-rD-~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYTK-RD-PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHHc-cC-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667888889987775 45 38899999999998654 4899999999999999999884
No 359
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.93 E-value=2.9 Score=34.88 Aligned_cols=69 Identities=17% Similarity=0.072 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEE 257 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 257 (331)
.++-..+... ++++.|..+.++.+..+ |.++.-+.-.|.+|.++|.+.-|+..++..+..-|+.+.+..
T Consensus 185 ~~lk~~~~~e---------~~~~~al~~~~r~l~l~--P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 185 RNLKAALLRE---------LQWELALRVAERLLDLN--PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHh---------hchHHHHHHHHHHHhhC--CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 3455556666 89999999999999966 999999999999999999999999999999999999887633
No 360
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=89.66 E-value=20 Score=34.53 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=44.2
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHH------Hhc----CCCCcHH--HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 222 YFNCATVNKYLENYERALSGFEAS------ALK----DPSLNAT--EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~~~~~~~--~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
|-.-|.++.+..++++|+++|++. +++ .|..... ...|.-+...|+++.|+..|-+|..+...
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 566677888888899999988764 332 3443332 56677788889999998877777655443
No 361
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=89.17 E-value=11 Score=31.02 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-hCChhHHHHHHHHHHhcCCCh--HHHhhHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWK-KGDLPAAKNCFNLALSKGPNK--KILCQLSMLE 142 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~ 142 (331)
+..++.+....++| ++.+.++++++..+|.. .+=...++.+|-. .|....+...+.......... .....+..-+
T Consensus 4 li~~Aklaeq~eRy-~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~y 82 (236)
T PF00244_consen 4 LIYLAKLAEQAERY-DDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDY 82 (236)
T ss_dssp HHHHHHHHHHTTHH-HHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHH
Confidence 44678888899998 99999999999997764 3334445555432 344455555554444332221 1111111111
Q ss_pred HH-hccCchhHHHHHHHHHHHHHHHhcCCCCCch----hHHHHHHHHHhhhhhcCCCC-hhhHHHHHHHHHHHHhc---h
Q 020060 143 RS-MAQGSENQAEIVEESIQHAKEAITLDVKDGN----SWYNLGNACLTSFFVTGSWD-HSKLLQSLKAYQNAEKD---E 213 (331)
Q Consensus 143 ~~-~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~---~ 213 (331)
.. +.. .-..--.+.+......+--...++. .+-..|..|...+-...... ..-.+.|...|++|+.. .
T Consensus 83 k~kie~---EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 159 (236)
T PF00244_consen 83 KKKIED---ELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKE 159 (236)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcc
Confidence 11 100 0000122233333322211111221 22335665554422222000 01337788888888862 1
Q ss_pred hcCCChhH---HhhHHHHHH-HhhcHHHHHHHHHHHHh
Q 020060 214 RMKSNPDL---YFNCATVNK-YLENYERALSGFEASAL 247 (331)
Q Consensus 214 ~~~~~~~~---~~~la~~~~-~~g~~~~A~~~~~~al~ 247 (331)
..|.+|.. ..|.+..|+ .+|+.++|....++++.
T Consensus 160 L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 160 LPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34666633 566777664 48999999888777764
No 362
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.02 E-value=14 Score=35.51 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=105.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHH---HhCChhHHHHHHHHHHhcCCCh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------DAWLCLGSCIW---KKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+.+..++-..|....+| +.-+++.+. ++.-|+.- ...+..+.++- +-|+-++|+...-.+++.....
T Consensus 199 L~~d~V~nlmlSyRDvQdY-~amirLVe~-Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v 276 (1226)
T KOG4279|consen 199 LHPDTVSNLMLSYRDVQDY-DAMIRLVED-LKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV 276 (1226)
T ss_pred cCHHHHHHHHhhhccccch-HHHHHHHHH-HHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC
Confidence 3455556666778889998 755554444 44445321 12222232332 3488899999999888876544
Q ss_pred --HHHhhHHHHHHHhccC-chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 133 --KILCQLSMLERSMAQG-SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
+.++..|.+|..+-.. .....+..+.|++.|+++++..|..... .+++.++... | ..++...+.-.-.
T Consensus 277 apDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aa----G----~~Fens~Elq~Ig 347 (1226)
T KOG4279|consen 277 APDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAA----G----EHFENSLELQQIG 347 (1226)
T ss_pred CCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHh----h----hhccchHHHHHHH
Confidence 6677788888765221 1223445889999999999999975433 3445544443 1 3444444443333
Q ss_pred Hhchhc---CCC---hhHHhhHHHHH---HHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 210 EKDERM---KSN---PDLYFNCATVN---KYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 210 l~~~~~---~~~---~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++++.. .+. ..-|+..|..+ .-.++|.+|+..-++..++.|-.-.
T Consensus 348 mkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WY 401 (1226)
T KOG4279|consen 348 MKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWY 401 (1226)
T ss_pred HHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceeh
Confidence 332110 111 11233333332 2357899999988888888765433
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.69 E-value=16 Score=32.53 Aligned_cols=199 Identities=19% Similarity=0.134 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC----
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD---- 170 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~---- 170 (331)
-.++..+|.-|...|+++.|+++|.++-..-.+. ..+.++-.+-..+| +|..-..+..+|...-
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~--------nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMG--------NWGHVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhc--------chhhhhhHHHHHHhCchhhh
Confidence 3578889999999999999999999965443332 33444444444443 3555555555544321
Q ss_pred ---C-CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh------cCCChhHHhhHHHH-HHHhhcHH---
Q 020060 171 ---V-KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER------MKSNPDLYFNCATV-NKYLENYE--- 236 (331)
Q Consensus 171 ---p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~la~~-~~~~g~~~--- 236 (331)
+ -.+.+...-|.+.+.+ ++|..|..+|-.+..... .|.+..+|..+-.+ -+...++.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~l---------kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~v 292 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLL---------KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNV 292 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHH---------HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHH
Confidence 0 0123445556666666 899999999988775221 13333333332211 11122222
Q ss_pred HHHHHHHHHHhcCCCCcH-----H-HHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHhhcccccc---CCCccccccchhh
Q 020060 237 RALSGFEASALKDPSLNA-----T-EEVQMMVNLLDKIENLL-KGHAKTKRVASLASSLAVVKL---SSSHKRATVDLLS 306 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~~~-----~-~~l~~~~~~l~~~~~a~-~~~~~a~~l~~~~~~~~~~~~---~~~~~~~~~~~~~ 306 (331)
..-..|+..+++.|.-.. . ...+.++..+.+...-+ -..--+..+..++..++...+ .+.|-.+.++.+.
T Consensus 293 i~n~~Fk~flel~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA 372 (466)
T KOG0686|consen 293 IKNESFKLFLELEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMA 372 (466)
T ss_pred HcchhhhhHHhcChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHH
Confidence 223456777777776432 1 44444444444433322 112223344455555555433 4555555555555
Q ss_pred ccCCcCce
Q 020060 307 EGLNKAVA 314 (331)
Q Consensus 307 ~~~~~~~~ 314 (331)
..++.+..
T Consensus 373 ~af~~sv~ 380 (466)
T KOG0686|consen 373 EAFNTSVA 380 (466)
T ss_pred HHhcccHH
Confidence 55555543
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.12 E-value=1.5 Score=25.33 Aligned_cols=25 Identities=16% Similarity=0.037 Sum_probs=23.3
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 223 FNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+.+|.+|..+|+++.|...++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6799999999999999999999994
No 365
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.79 E-value=22 Score=32.69 Aligned_cols=61 Identities=11% Similarity=-0.134 Sum_probs=39.9
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
..++.++.+|...++ ++-...+++..+.+-++...-..|+..|.. ++.+.+..+|.+++..
T Consensus 100 mal~el~q~y~en~n--~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 100 MALLELLQCYKENGN--EQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHHHHhcCc--hhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 445566666666643 556666676667666666666667766655 6777777777777644
No 366
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.62 E-value=19 Score=35.04 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
...+...|.-++..|++++|...|-+++..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 345555666666777777777777666644
No 367
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=87.48 E-value=28 Score=33.43 Aligned_cols=83 Identities=11% Similarity=0.017 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
-.++.++|..+..+..+++|.++|...-. .-+...++..+. .|++-..+ ...-|++...+-
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------~e~~~ecly~le--------~f~~LE~l----a~~Lpe~s~llp 856 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD-------TENQIECLYRLE--------LFGELEVL----ARTLPEDSELLP 856 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHhHHHHHHHHH--------hhhhHHHH----HHhcCcccchHH
Confidence 46888888888888888888888876522 223334444332 24332222 233467777777
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+|..+... |--++|++.|-+.
T Consensus 857 ~~a~mf~sv---------GMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 857 VMADMFTSV---------GMCDQAVEAYLRR 878 (1189)
T ss_pred HHHHHHHhh---------chHHHHHHHHHhc
Confidence 788877777 7777777777653
No 368
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.91 E-value=19 Score=31.07 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.-+.+-..-++..+..+-++.-..+++++|+. .++..++.-.. .-..+|.+.++++++.
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa----------~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA----------TTIVDAERLFKQALKA 245 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh----------hhHHHHHHHHHHHHHH
Confidence 34555556667777777888888888888887 66666554322 2256667777766653
No 369
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.02 E-value=7.9 Score=32.21 Aligned_cols=28 Identities=21% Similarity=0.173 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
....+|.-|+..|++++|+.+|+.+...
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445566666666666666666666433
No 370
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=85.79 E-value=7.7 Score=25.46 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.++|+....+++..+ ..|+|++|+.+|.++++.
T Consensus 3 l~kai~Lv~~A~~eD-----------------~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDED-----------------EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhh-----------------HhhhHHHHHHHHHHHHHH
Confidence 356666666666533 458888888888888874
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=85.24 E-value=27 Score=31.19 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH--HHHHHH--HHHHHHhCChhHHHHHHHHHHhcC
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA--DAWLCL--GSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
....+..++..++| ..|...+......-|... ..+..+ |.-++..-++.+|.+++++.+...
T Consensus 134 ~~~~a~~l~n~~~y-~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 134 EWRRAKELFNRYDY-GAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHhcCCH-HHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 44566777889999 999999999988533333 344444 555577889999999999987653
No 372
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.19 E-value=2.2 Score=24.71 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+.+|..|...|+.+.|...++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999853
No 373
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.08 E-value=11 Score=33.79 Aligned_cols=130 Identities=12% Similarity=-0.023 Sum_probs=72.9
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcC---------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChH-HHhhH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLN---------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKK-ILCQL 138 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~l 138 (331)
.+.+++..+||| ..|++.++.. +++ +-....++..|-+|+-+++|.+|++.|...+-.-.... .+...
T Consensus 127 gLlRvh~LLGDY-~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~ 204 (404)
T PF10255_consen 127 GLLRVHCLLGDY-YQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQR 204 (404)
T ss_pred HHHHHHHhccCH-HHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 344677789999 8899887652 222 23456789999999999999999999999874322111 11111
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
+.-+-. ..+..++....+--++.+.|.. ..+...+-.-|...+... ..|+.+.-.+.|..+-
T Consensus 205 ~~q~d~-------i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~km---q~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 205 SYQYDQ-------INKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKM---QRGDEEAFEELFSFAC 268 (404)
T ss_pred cchhhH-------HHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HccCHHHHHHHHHhhC
Confidence 111111 1234566666666666666742 222223322222221111 2255555556666554
No 374
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.04 E-value=16 Score=28.45 Aligned_cols=138 Identities=13% Similarity=0.043 Sum_probs=88.7
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----HHHhhHHHHHH
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSL--ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-----KILCQLSMLER 143 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~l~~~~~ 143 (331)
+.-+...+.. ++|+..|...-+..-.. .-+....|.+..+.|+-..|+..|..+-.-.|.. .+...-+.++.
T Consensus 65 AL~lA~~~k~-d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 65 ALKLAQENKT-DDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHcCCc-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 3344455663 78888888776654332 3466778899999999999999999987766544 23344455555
Q ss_pred HhccCchhHHHHHHHHHHHHHHHh-cCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAI-TLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
..| -|++-....+..- .-+|-...+.-.||..-... |++.+|...|...... ...|..-
T Consensus 144 D~g--------sy~dV~srvepLa~d~n~mR~sArEALglAa~ka---------gd~a~A~~~F~qia~D---a~aprni 203 (221)
T COG4649 144 DNG--------SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA---------GDFAKAKSWFVQIAND---AQAPRNI 203 (221)
T ss_pred ccc--------cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc---------cchHHHHHHHHHHHcc---ccCcHHH
Confidence 444 3666555444321 22333344556678877777 9999999999998863 3334444
Q ss_pred hhHHHHH
Q 020060 223 FNCATVN 229 (331)
Q Consensus 223 ~~la~~~ 229 (331)
.+.+.+.
T Consensus 204 rqRAq~m 210 (221)
T COG4649 204 RQRAQIM 210 (221)
T ss_pred HHHHHHH
Confidence 4444443
No 375
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.66 E-value=6.2 Score=37.79 Aligned_cols=109 Identities=10% Similarity=0.043 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
.++.-.++-..|....+|+.-++.-+.. +.-|+. ...+..+-++.+.. ..|+-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRN-----r~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRN-----RPGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccC-----CCccHHHHHHHHHHHHHhc
Confidence 4677788889999999998888777654 334432 22233333333222 3356888999888888754
Q ss_pred -CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 171 -VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 171 -p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
|-.++.+..-|.+|..+|+..+..+.+..+.|+++|+++.+.
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 556788899999999999999988999999999999999973
No 376
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.39 E-value=26 Score=32.37 Aligned_cols=73 Identities=19% Similarity=0.157 Sum_probs=54.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCC-cHHHHHHHHHHHHHhCC-hhHHHHHHHHHHhcCC
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPS-LADAWLCLGSCIWKKGD-LPAAKNCFNLALSKGP 130 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~ 130 (331)
+..+..-.++.+|.++..+|+ ...|..+|..+++. ++. .|.+++.+|..|+..|. ..++..++.+|-....
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~ 522 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYAS 522 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcc
Confidence 344555566778888888888 48888888887742 111 36788889999888888 8888888888877775
Q ss_pred Ch
Q 020060 131 NK 132 (331)
Q Consensus 131 ~~ 132 (331)
+.
T Consensus 523 dY 524 (546)
T KOG3783|consen 523 DY 524 (546)
T ss_pred cc
Confidence 55
No 377
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=83.63 E-value=39 Score=31.65 Aligned_cols=124 Identities=11% Similarity=-0.033 Sum_probs=96.4
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-CCCch
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD-VKDGN 175 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 175 (331)
....|......-...|+++.....|++++---... ..|...+.-....| +.+-|...+..+.+.. |..+.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~--------~~~~~~~~~~~~~~i~~k~~~~ 367 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSG--------DVSLANNVLARACKIHVKKTPI 367 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcC--------chhHHHHHHHhhhhhcCCCCcH
Confidence 34567777777888999999999999997543333 88888888777665 4777777777777754 56666
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALS 240 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 240 (331)
+...-+.+-... |++..|...+++....- |+...+-.........+|+.+.+..
T Consensus 368 i~L~~a~f~e~~---------~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 368 IHLLEARFEESN---------GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHHHHHhh---------ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH
Confidence 666666666666 99999999999999854 8888887788888888899988884
No 378
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.46 E-value=41 Score=32.07 Aligned_cols=56 Identities=13% Similarity=0.064 Sum_probs=34.9
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 227 TVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 227 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..+...+++.+|...-++--+.-|+-. ...++-+....++++|.+.|.+|-+-++.
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~dVy--~pyaqwLAE~DrFeEAqkAfhkAGr~~EA 836 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDDVY--MPYAQWLAENDRFEEAQKAFHKAGRQREA 836 (1081)
T ss_pred hheeecccchHhHhhhhhCcccccccc--chHHHHhhhhhhHHHHHHHHHHhcchHHH
Confidence 344456667777666554333333211 55667777888888888888888766543
No 379
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.77 E-value=6.8 Score=33.11 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
+..++..+... |+++.++..+++.+... |.+...|..+-..|...|+...|+..|++.-+.
T Consensus 156 l~~lae~~~~~---------~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIAC---------GRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhc---------ccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 34455555555 78888888888888844 888888888888888888888888888887764
No 380
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.72 E-value=5.3 Score=35.68 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.|..++..+ |+|..|++.++..-- ....+-+...++.+|-+|..+++|.+|++.|...+..
T Consensus 127 gLlRvh~LL---------GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 127 GLLRVHCLL---------GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHhc---------cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556 999999988775431 0112345566999999999999999999999998853
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=80.49 E-value=43 Score=29.98 Aligned_cols=63 Identities=11% Similarity=0.019 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
-....+.-.+..++|..|...+......-|.. . .+..++..|... ..-++++|.+.++..+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W------D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW------DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH------HccCHHHHHHHHHHHHHH
Confidence 34556777889999999999999999863333 3 444455544433 123588999999987764
No 382
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.46 E-value=4.4 Score=20.81 Aligned_cols=26 Identities=19% Similarity=0.366 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGS 107 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~ 107 (331)
+.|...|++++...|..+..|...+.
T Consensus 4 ~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 4 ERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 66777777777777777777666544
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.42 E-value=9.9 Score=30.79 Aligned_cols=58 Identities=26% Similarity=0.178 Sum_probs=52.4
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+...+.. ++|+...+.-++-.|.+......+-.++.-.|+|++|...++-+-++.|+.
T Consensus 11 LL~~~sL-~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSL-QDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccH-HHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3445664 899999999999999999999999999999999999999999999999987
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.42 E-value=47 Score=30.43 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=61.4
Q ss_pred HHhCChhHHHHHHH--HHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 110 WKKGDLPAAKNCFN--LALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 110 ~~~g~~~~A~~~~~--~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
...++++++.+... +.+..-|. .....++..+...| ..+.|+.+. +++...+.|+. .+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~-~~~~~i~~fL~~~G--------~~e~AL~~~--------~D~~~rFeLAl---~l 331 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPK-DQGQSIARFLEKKG--------YPELALQFV--------TDPDHRFELAL---QL 331 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--H-HHHHHHHHHHHHTT---------HHHHHHHS--------S-HHHHHHHHH---HC
T ss_pred HHcCChhhhhhhhhhhhhcccCCh-hHHHHHHHHHHHCC--------CHHHHHhhc--------CChHHHhHHHH---hc
Confidence 45678888777765 22222232 33445666666555 466676653 34556666655 34
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
|+++.|.+... ..+++..|..+|.....+|+++-|..+|+++-.
T Consensus 332 ---------g~L~~A~~~a~-------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 332 ---------GNLDIALEIAK-------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp ---------T-HHHHHHHCC-------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred ---------CCHHHHHHHHH-------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 88888876542 356788999999999999999999999998643
No 385
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=79.95 E-value=2.6 Score=21.75 Aligned_cols=29 Identities=14% Similarity=0.125 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNA 183 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 183 (331)
+.+.+...|++++...|.++..|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 47889999999999999999999876654
No 386
>PF12854 PPR_1: PPR repeat
Probab=79.89 E-value=5.7 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.074 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNL 124 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (331)
+...|..+-..|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 356778888888888999988888865
No 387
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=79.21 E-value=42 Score=29.15 Aligned_cols=96 Identities=21% Similarity=0.169 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--------------------------HHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------------------------KIL 135 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~~ 135 (331)
.+-|+.-..+++++|..+.++..++.- ...-..+|.+.|+++++..... ..-
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIK 278 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIK 278 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHH
Confidence 667888888999999999999888763 2233556777777776543211 123
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHhh
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--GNSWYNLGNACLTS 187 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~ 187 (331)
..++.+-+++| +..+|++.++...+-.|-. ..++-+|-.+++.+
T Consensus 279 RRLAMCARklG--------rlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~ 324 (556)
T KOG3807|consen 279 RRLAMCARKLG--------RLREAVKIMRDLMKEFPLLTMLNIHENLLEALLEL 324 (556)
T ss_pred HHHHHHHHHhh--------hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 34777777665 6999999999988877732 12334444444444
No 388
>PF12854 PPR_1: PPR repeat
Probab=78.45 E-value=5.4 Score=21.39 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=24.4
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
+-|...|..+-..+.+.|+.++|.+.|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 34556688899999999999999999875
No 389
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.34 E-value=36 Score=29.45 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H---HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K---ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~---~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 171 (331)
.+++..+|..|.+.||-+.|.+.+++..+..... + ....+|..+..... ..+..+.|...+++.=..+.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~l----V~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDL----VTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHH----HHHHHHHHHHHHHhCCChhh
Confidence 6799999999999999999999999887665332 2 23345555553321 22334555555544332222
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.| ..-..-|...+.. .++.+|...|-.++.
T Consensus 180 rN-RlKvY~Gly~msv---------R~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 180 RN-RLKVYQGLYCMSV---------RNFKEAADLFLDSVS 209 (393)
T ss_pred hh-hHHHHHHHHHHHH---------HhHHHHHHHHHHHcc
Confidence 22 1222344444444 788888888887774
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=78.19 E-value=24 Score=29.30 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=33.7
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
.+...+|.-|+..|+| ++|..+|+.+...... ...+...+-.|+...|+.+..+.+.-+.
T Consensus 179 ~l~~~~A~ey~~~g~~-~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDY-DKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3344566666666666 6666666666544321 1334455566666666666655554443
No 391
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=44 Score=28.43 Aligned_cols=93 Identities=17% Similarity=0.061 Sum_probs=54.2
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHh----cCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----CC
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALS----KGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-----DV 171 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~----~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-----~p 171 (331)
.+...++..|+|.+|+....-.+. .+... ..+..-+.+|..+. +..++...+..|-.. .|
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~ir--------nv~KskaSLTaArt~Ans~YCP 201 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIR--------NVSKSKASLTAARTLANSAYCP 201 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHH--------hhhhhhhHHHHHHHHhhccCCC
Confidence 356778899999999988776652 22222 55666677777653 466666655554332 23
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
....+...|-.--+.. +..+|.-|..+|-.+++
T Consensus 202 pqlqa~lDL~sGIlhc-------dd~dyktA~SYF~Ea~E 234 (421)
T COG5159 202 PQLQAQLDLLSGILHC-------DDRDYKTASSYFIEALE 234 (421)
T ss_pred HHHHHHHHHhccceee-------ccccchhHHHHHHHHHh
Confidence 2222222221111111 34788999999988886
No 392
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.84 E-value=64 Score=29.97 Aligned_cols=180 Identities=13% Similarity=0.054 Sum_probs=108.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHH-Hh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKI-LC 136 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 136 (331)
..+...+..+..+...|+ .+.|+..+..++. +.. .-.++.+|.++....+|..|..++......+.-..+ +.
T Consensus 265 ~ga~wll~~ar~l~~~g~-~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~ 341 (546)
T KOG3783|consen 265 KGALWLLMEARILSIKGN-SEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYT 341 (546)
T ss_pred CCccHHHHHHHHHHHccc-HHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHH
Confidence 334455567777888888 4889999988887 221 335677888888888899999988888776654422 22
Q ss_pred hHH-HHHHHhccC------chh----------------------HHHHHHHHHHHHHHH---------------------
Q 020060 137 QLS-MLERSMAQG------SEN----------------------QAEIVEESIQHAKEA--------------------- 166 (331)
Q Consensus 137 ~l~-~~~~~~g~~------~~~----------------------~~~~~~~A~~~~~~a--------------------- 166 (331)
.++ .++..-+.. ..+ +..-..++.++-.+.
T Consensus 342 Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wng 421 (546)
T KOG3783|consen 342 YFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNG 421 (546)
T ss_pred HHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhh
Confidence 222 333211100 000 000000111100000
Q ss_pred hc--------------CCCC-----C-chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-----hcCCChhH
Q 020060 167 IT--------------LDVK-----D-GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-----RMKSNPDL 221 (331)
Q Consensus 167 l~--------------~~p~-----~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~ 221 (331)
+. ..|. + .--+..+|.++..+ |+...|..+|...++.. ..--.|.+
T Consensus 422 f~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~L---------g~~~~a~~~f~i~~~~e~~~~~d~w~~PfA 492 (546)
T KOG3783|consen 422 FSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNL---------GDSEVAPKCFKIQVEKESKRTEDLWAVPFA 492 (546)
T ss_pred cccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhhccccccccHH
Confidence 00 0010 0 11234567777777 88889999998887411 11224677
Q ss_pred HhhHHHHHHHhhc-HHHHHHHHHHHHhcCCCCc
Q 020060 222 YFNCATVNKYLEN-YERALSGFEASALKDPSLN 253 (331)
Q Consensus 222 ~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 253 (331)
++.+|..+..+|. ..+|..++.+|-....+..
T Consensus 493 ~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 493 LYELALLYWDLGGGLKEARALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHHHhcccChHHHHHHHHHHHhhccccc
Confidence 9999999999999 9999999999988876654
No 393
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=74.67 E-value=14 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.118 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+..+..++..++.++. .-++.++.+++.++...|+.++|.....++..+.|.+
T Consensus 125 ~~l~~~~~~a~~~l~~---~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRR---RPDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 5556666777777753 3478889999999999999999999999999999944
No 394
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.05 E-value=7.7 Score=25.75 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+.|+.|..+.+++++.+ ..|+.++|+.+|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~d-----------------E~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRAD-----------------EWGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhh-----------------hcCCHHHHHHHHHHHHH
Confidence 56778888888887643 33566666666666665
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.84 E-value=11 Score=31.90 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=42.5
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
...+..|...|.+.+|+++.++++.++|-+... ..+-.++..+|+--.+.+.|.+-.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345666777788888888888888888877776 777778888888777776666544
No 396
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.75 E-value=18 Score=33.99 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
....++..+..+|- .++|+++.++....+.++. ++ ++++.|.+...+ .++..-|..|
T Consensus 616 ~rt~va~Fle~~g~-------~e~AL~~s~D~d~rFelal---~l--------grl~iA~~la~e-----~~s~~Kw~~L 672 (794)
T KOG0276|consen 616 IRTKVAHFLESQGM-------KEQALELSTDPDQRFELAL---KL--------GRLDIAFDLAVE-----ANSEVKWRQL 672 (794)
T ss_pred hhhhHHhHhhhccc-------hHhhhhcCCChhhhhhhhh---hc--------CcHHHHHHHHHh-----hcchHHHHHH
Confidence 34445555555554 4455666666644444443 23 357777776554 3567789999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch------hcCCChhHHhhHHH-------------HHHHhhcHHHHHHH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE------RMKSNPDLYFNCAT-------------VNKYLENYERALSG 241 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~la~-------------~~~~~g~~~~A~~~ 241 (331)
|.+.+.. +++..|.++|.++.... ...++.+.+..+|. +|...|++++++..
T Consensus 673 g~~al~~---------~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 673 GDAALSA---------GELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred HHHHhhc---------ccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHH
Confidence 9999988 99999999999986421 12334443333333 35566667666666
Q ss_pred HHH
Q 020060 242 FEA 244 (331)
Q Consensus 242 ~~~ 244 (331)
+..
T Consensus 744 Li~ 746 (794)
T KOG0276|consen 744 LIS 746 (794)
T ss_pred HHh
Confidence 544
No 397
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.42 E-value=7.4 Score=25.64 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=11.7
Q ss_pred HhhcHHHHHHHHHHHHh
Q 020060 231 YLENYERALSGFEASAL 247 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~ 247 (331)
..|+|++|+.+|..++.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45777777777777665
No 398
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=73.06 E-value=73 Score=28.89 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhh-------HHHHHHHhccCch------hHHHHHHHHHHHHHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQ-------LSMLERSMAQGSE------NQAEIVEESIQHAKEA 166 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------l~~~~~~~g~~~~------~~~~~~~~A~~~~~~a 166 (331)
....+|+..+-.+||+-|...|+.+.+-...+.+|.. .|.++...+.... ....-++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 4466899999999999999999988765544444433 3333333333211 2334566777777663
No 399
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=72.89 E-value=11 Score=33.24 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhhccCCCCccchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccccc------------
Q 020060 13 TKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEY------------ 80 (331)
Q Consensus 13 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~------------ 80 (331)
..-+.+|..+.+.||.....+ .--+.+-+-++-++|+........ ......+|...|.++..++.|
T Consensus 48 dDEl~QL~gLw~ty~~S~rd~-ellLnGiIHECDRLLR~~e~~~~~-~~Lp~~FhaIYalALsELa~f~~~~~~~~~~~~ 125 (404)
T PF12753_consen 48 DDELSQLKGLWKTYFESDRDN-ELLLNGIIHECDRLLRNSEEEEKK-KELPDRFHAIYALALSELAIFKAEEEEEKKREK 125 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHSS-GG----GS-HHHHHHHHHHHHHHHHTHHHHGGGS-TT-
T ss_pred CchHHHHHHHHHHHHhccccc-chhhccchHHHHHHHHcccccccc-ccccHHHHHHHHHHHHHHHHhhcchhhhhhhhh
Confidence 445566677777777632211 113455566666666665421100 023334444445554443332
Q ss_pred ----HHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Q 020060 81 ----RKDAEDHLSKAVKLNPSLADAWLCLGSCIW 110 (331)
Q Consensus 81 ----~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 110 (331)
.+.|++-..-.++..|++....+..+.++.
T Consensus 126 v~efFdaAlER~e~Gl~~~p~s~~L~l~~skIll 159 (404)
T PF12753_consen 126 VSEFFDAALERVELGLEKFPDSILLLLAKSKILL 159 (404)
T ss_dssp -HHHHHHHHHHHHHGGSSS--H-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCchhHHHHHHHHHH
Confidence 245555555556677887665555555443
No 400
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.51 E-value=58 Score=27.48 Aligned_cols=191 Identities=12% Similarity=0.006 Sum_probs=93.8
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-------CCCcHHHHHHHHHHHHHhC
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL-------NPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g 113 (331)
..++|+..+.++..-......=-..++-..-.+.+.+++| ++-++.|.+.+.. +-.. .....+-..-....
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~-~eMm~~Y~qlLTYIkSAVTrNySE-KsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNY-KEMMERYKQLLTYIKSAVTRNYSE-KSINSILDYISTSK 119 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHhhhh
Confidence 3445555555444211112222233455666778888887 7777777776643 2111 11111111112223
Q ss_pred ChhHHHHHHHHHHhc---CCChHHHh----hHHHHHHHhccCchhHHHHHHHHHHHHHH---HhcCCCCC---------c
Q 020060 114 DLPAAKNCFNLALSK---GPNKKILC----QLSMLERSMAQGSENQAEIVEESIQHAKE---AITLDVKD---------G 174 (331)
Q Consensus 114 ~~~~A~~~~~~al~~---~~~~~~~~----~l~~~~~~~g~~~~~~~~~~~~A~~~~~~---al~~~p~~---------~ 174 (331)
+.+--..+|+..+.. ..+...|+ .+|.+++..| .|.+-.+.+++ ..+.+... .
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~--------e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRG--------EYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHH--------HHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 333334444444432 22334444 4888888776 24444444444 33332111 1
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH----HhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL----YFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
++|-.--..|-.. .+-.+-...|++++.....-.+|.. .-.-|..+.+-|+|++|...|=.|++...
T Consensus 192 EiYAlEIQmYT~q---------KnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 192 EIYALEIQMYTEQ---------KNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhHhhHhhhhhhh---------cccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 2222222333333 5555566678888864322233333 22335567788999999888888876543
No 401
>PF13041 PPR_2: PPR repeat family
Probab=72.09 E-value=9.5 Score=22.36 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=27.6
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
...|+.+-..+... |++++|.+.|++..+.+..|+
T Consensus 3 ~~~yn~li~~~~~~---------~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 3 VVTYNTLISGYCKA---------GKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred hHHHHHHHHHHHHC---------cCHHHHHHHHHHHHHcCCCCC
Confidence 45677788888888 999999999999997543343
No 402
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=71.86 E-value=10 Score=20.07 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHh----CChhHHHHHHHHHHhc
Q 020060 100 DAWLCLGSCIWKK----GDLPAAKNCFNLALSK 128 (331)
Q Consensus 100 ~~~~~lg~~~~~~----g~~~~A~~~~~~al~~ 128 (331)
.+.+.+|.+|..- .+..+|..+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 3556666666542 3667777777766543
No 403
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.51 E-value=12 Score=28.12 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=24.0
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
...+...+..|+| .-|.++...++..+|++..+...++.++..+|
T Consensus 74 l~~A~~~~~~gd~-~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 74 LERAQAALAAGDY-QWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHCT-H-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3444555555665 66666666666666666666665555555443
No 404
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=71.40 E-value=26 Score=23.00 Aligned_cols=20 Identities=5% Similarity=0.026 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhcCCCCCch
Q 020060 156 VEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~ 175 (331)
|.+|++.+.+++...|+++.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHHHHhCCChHH
Confidence 44444455555555555443
No 405
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.32 E-value=70 Score=27.92 Aligned_cols=161 Identities=10% Similarity=-0.024 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--------------------------CChhHHHHHHHHHHhcCC-Ch-H
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKK--------------------------GDLPAAKNCFNLALSKGP-NK-K 133 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------------------g~~~~A~~~~~~al~~~~-~~-~ 133 (331)
++|+..=+-...+-|..++++-.++.+.++. +-.+++...+.+++.... .. .
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPYq 292 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPYQ 292 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChHH
Confidence 6788888888888999998877777665432 224566667777665542 21 1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
..-.++.++-.-... ..-++..-...|.-.....| +|.+-.|.+.+.... .-...++...+......
T Consensus 293 lqAAIaa~HA~a~~a---edtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~---------~Gp~agLa~ve~L~~~~ 359 (415)
T COG4941 293 LQAAIAALHARARRA---EDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMR---------EGPAAGLAMVEALLARP 359 (415)
T ss_pred HHHHHHHHHHhhccc---CCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHh---------hhHHhHHHHHHHhhccc
Confidence 111122222211000 00135555555555555555 455555666665544 44556666666555422
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
...+....+-..|..+.++|+.++|...|++++.+.++....
T Consensus 360 ~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 360 RLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred ccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 123344456778889999999999999999999998887664
No 406
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=70.98 E-value=8 Score=19.55 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
|..+-..|.+.|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566777777777777777776544
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=70.36 E-value=40 Score=24.69 Aligned_cols=46 Identities=9% Similarity=0.002 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
.+.+.|............+..|...|..+...|++.+|.+.|+.++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 6777777777644446677889999999999999999999999875
No 408
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=70.28 E-value=66 Score=27.24 Aligned_cols=176 Identities=14% Similarity=0.077 Sum_probs=110.0
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----h----CChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----K----GDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~----g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
.+........+|...|++.=...+..+|..-..|...-.+... . .-.+.-+.+...+++-+|++ ..|...-
T Consensus 36 gr~~a~r~kkeys~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~ 115 (328)
T COG5536 36 GRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQ 115 (328)
T ss_pred HHHHHHHhhhhcCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHH
Confidence 3344455556665667777777777788777676655444433 1 12456677888999999998 7777766
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.++..... .++..-....++.++.+|.+--.|...-.++...- .- ..-..+..-.++-..+|.. ++.|.
T Consensus 116 ~~Le~~p~------~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie--~~-~N~S~~k~e~eytt~~I~t--di~N~ 184 (328)
T COG5536 116 WMLELFPK------PSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIE--DL-FNFSDLKHELEYTTSLIET--DIYNN 184 (328)
T ss_pred HHHHhCCC------cccchhHHHHHHHhcccccccceeeeEeeeeecch--hh-ccchhHHHHHHhHHHHHhh--CCCCh
Confidence 66554421 23677788888999999999888876554441100 00 0003444446666666664 48888
Q ss_pred hHHhhHHHH---HHHhhc------HHHHHHHHHHHHhcCCCCcHH
Q 020060 220 DLYFNCATV---NKYLEN------YERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 220 ~~~~~la~~---~~~~g~------~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+|.+.-.. ....|+ +++-+.+.-.++-.+|++...
T Consensus 185 SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~ 229 (328)
T COG5536 185 SAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSV 229 (328)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccch
Confidence 887666222 222333 556677777777888988765
No 409
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.60 E-value=69 Score=27.15 Aligned_cols=162 Identities=11% Similarity=0.037 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHH
Q 020060 80 YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK--GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIV 156 (331)
Q Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~ 156 (331)
+.+.-...+..+++-+|..-..|...-.++... ..+..-....++.+..++.+ ..|...-.++....+. . .-..+
T Consensus 89 ~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~-~-N~S~~ 166 (328)
T COG5536 89 LLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDL-F-NFSDL 166 (328)
T ss_pred hhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhh-c-cchhH
Confidence 345667788899999999999999888887665 56777788889999999988 5554433333111000 0 11235
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC-CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH----H
Q 020060 157 EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS-WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK----Y 231 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~----~ 231 (331)
.+-.++-..++..++.+..+|...-......+. .|. ..+.-+++-+.+.-.++-. .|++.++|..+-.+.. .
T Consensus 167 k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~-~~~visqk~l~~eL~~i~~~if~--~p~~~S~w~y~r~~~~~~~~d 243 (328)
T COG5536 167 KHELEYTTSLIETDIYNNSAWHHRYIWIERRFN-RGDVISQKYLEKELEYIFDKIFT--DPDNQSVWGYLRGVSSEFATD 243 (328)
T ss_pred HHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHHHhhhhc--CccccchhhHHHHHhccchHH
Confidence 566788888899999999999887554444332 111 1112256666666666663 4888888765544332 2
Q ss_pred hhcHHHHHHHHHHHH
Q 020060 232 LENYERALSGFEASA 246 (331)
Q Consensus 232 ~g~~~~A~~~~~~al 246 (331)
.-.+.+-+..+.+-+
T Consensus 244 ~~~~~e~v~~L~k~~ 258 (328)
T COG5536 244 IVMIGEKVEDLGKYI 258 (328)
T ss_pred HHHHHHHHHHHHhhh
Confidence 334556666664443
No 410
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.37 E-value=12 Score=19.39 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+|+.+-..|... |++++|...|.+..+..
T Consensus 2 ~~n~li~~~~~~---------~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKA---------GRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHC---------CCHHHHHHHHHHHHHcC
Confidence 456666777777 99999999999887643
No 411
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=69.23 E-value=30 Score=32.62 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
.++.++.+...++...+ .....+...+..+..+...+. +++|-.+|++.+..+|+ ++++..+.-+...|-...
T Consensus 20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (578)
T PRK15490 20 QEKKLAQAVALIDSELP----TEALTSLAMLKKAEFLHDVNE-TERAYALYETLIAQNND--EARYEYARRLYNTGLAKD 92 (578)
T ss_pred HHhhHHHHHHHHHHhCC----ccchhHHHHHHHhhhhhhhhh-hHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhH
Confidence 34566777777766554 334556667788888889999 49999999999999998 678888898999998888
Q ss_pred HHHHHH
Q 020060 118 AKNCFN 123 (331)
Q Consensus 118 A~~~~~ 123 (331)
|...+.
T Consensus 93 ~~~~~~ 98 (578)
T PRK15490 93 AQLILK 98 (578)
T ss_pred HHHHHH
Confidence 888777
No 412
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=68.76 E-value=13 Score=20.11 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=16.5
Q ss_pred HHHHHHH--HHHHHhC-----ChhHHHHHHHHHHhc
Q 020060 100 DAWLCLG--SCIWKKG-----DLPAAKNCFNLALSK 128 (331)
Q Consensus 100 ~~~~~lg--~~~~~~g-----~~~~A~~~~~~al~~ 128 (331)
.+.+.+| .+|.... ++++|+.+|+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4556666 4444332 356777777776553
No 413
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=68.33 E-value=90 Score=28.02 Aligned_cols=127 Identities=13% Similarity=0.054 Sum_probs=73.6
Q ss_pred HHhCChhHHHHHHHHHHhcC-CCh---------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--CCCch--
Q 020060 110 WKKGDLPAAKNCFNLALSKG-PNK---------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--VKDGN-- 175 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~-~~~---------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~-- 175 (331)
+..+++.+|..+-+..+..- -.+ ..|+.+..++-..| +...-...+...+... ..+..
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~--------~l~~~rs~l~~~lrtAtLrhd~e~q 208 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEG--------RLADIRSFLHALLRTATLRHDEEGQ 208 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhc--------chHHHHHHHHHHHHHhhhcCcchhH
Confidence 44688889888877765432 111 23444444444443 2333333333222211 11222
Q ss_pred --hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC--hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 176 --SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN--PDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 176 --~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..+-|-..|+.. +.|+.|-....++.--....++ +...+.+|.+..-+++|..|.++|-+|+...|.
T Consensus 209 avLiN~LLr~yL~n---------~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 209 AVLINLLLRNYLHN---------KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHHHhhh---------HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 223334444444 8888888877776531111122 233788999999999999999999999999997
Q ss_pred Cc
Q 020060 252 LN 253 (331)
Q Consensus 252 ~~ 253 (331)
+.
T Consensus 280 ~~ 281 (493)
T KOG2581|consen 280 HA 281 (493)
T ss_pred hh
Confidence 44
No 414
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.97 E-value=9.4 Score=33.13 Aligned_cols=72 Identities=18% Similarity=0.025 Sum_probs=61.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKI 134 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 134 (331)
.......+++.+-...+.+ ..|+..-..++..++....+++..+..+....++++|++.+..+....|++..
T Consensus 273 ~r~~~~~n~~~~~lk~~~~-~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 273 LRFSIRRNLAAVGLKVKGR-GGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKA 344 (372)
T ss_pred cccccccchHHhcccccCC-CcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHH
Confidence 3444556677788888887 88888888888888889999999999999999999999999999999999833
No 415
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=67.38 E-value=28 Score=26.13 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=42.9
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
...+.....+.-....|++.-|......++..+|++..+ ...+.++..++...+..
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 344556777777888899999999999999999999988 88888888888765544
No 416
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=67.33 E-value=9.9 Score=24.96 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
+++|+...++|+..+. .|++++|+..|..++..
T Consensus 3 l~kai~Lv~~A~~eD~------------------------~gny~eA~~lY~~ale~ 35 (75)
T cd02680 3 LERAHFLVTQAFDEDE------------------------KGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHHhhH------------------------hhhHHHHHHHHHHHHHH
Confidence 5677777777765442 19999999999999974
No 417
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=66.51 E-value=18 Score=34.83 Aligned_cols=103 Identities=20% Similarity=0.175 Sum_probs=69.0
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHH--hCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWK--KGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
...-|+.++..++| ..+.--|..++.+-|.+ +....+.+.|+.. .|+|..++.-..-++...|.. .++...+
T Consensus 56 ~~~E~n~~~~K~d~-~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 56 LKEEGNKLFQKRDY-EGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHhhhhHHhhhhhh-hccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 33456777777776 77777777777776632 3445556666654 467777888788888877877 7777777
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.+|..++ .++-|++...-.....|.++.+--
T Consensus 135 ~~y~al~--------k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 135 RKYEALN--------KLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hHHHHHH--------HHHHHHHHHHHHhcCCCCcchHHH
Confidence 7777653 467777776666667777654433
No 418
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=66.41 E-value=30 Score=27.44 Aligned_cols=50 Identities=12% Similarity=0.108 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
...++..++.+...| ++..+..++.++...|+.++|.....++..+.|.+
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 445666777777778 48889999999999999999999999999999954
No 419
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=66.21 E-value=73 Score=26.18 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=30.5
Q ss_pred HhhHHHHHH---------HhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Q 020060 222 YFNCATVNK---------YLENYERALSGFEASALKDPSLNATEEVQMMVNLL 265 (331)
Q Consensus 222 ~~~la~~~~---------~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l 265 (331)
|-..|..+. ..++...|+.++++|+.++|+......+..+...+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~l 224 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRL 224 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 455566553 44678899999999999999987654444444333
No 420
>PF13041 PPR_2: PPR repeat family
Probab=65.48 E-value=25 Score=20.50 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
...|..+-..|.+.|++++|.+.|++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 4567777778888888888888888877554
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=65.25 E-value=1e+02 Score=27.64 Aligned_cols=133 Identities=14% Similarity=0.096 Sum_probs=82.5
Q ss_pred HHHhhhhh-hcccccHHHHHHHHHHHHhcC-C--------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---CCCh-
Q 020060 67 EYLKGKIL-DVVPEYRKDAEDHLSKAVKLN-P--------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSK---GPNK- 132 (331)
Q Consensus 67 ~~~~g~~~-~~~~~~~~~A~~~~~~al~~~-p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~- 132 (331)
++.++.++ ...++| .+|..+-...+.-- - -.+..|+.+..+|...|+...-...+...+.. ..+.
T Consensus 128 ~~lLv~Lfl~d~K~~-kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e 206 (493)
T KOG2581|consen 128 LYLLVLLFLIDQKEY-KEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEE 206 (493)
T ss_pred HHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcch
Confidence 33444433 345776 77877666654421 1 12567888888999999876666666555433 2222
Q ss_pred --HHH-hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc--CCC--CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH
Q 020060 133 --KIL-CQLSMLERSMAQGSENQAEIVEESIQHAKEAIT--LDV--KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA 205 (331)
Q Consensus 133 --~~~-~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~ 205 (331)
..+ +.+-..|..- +.|++|-....+..- ... ..+...+.+|.+-.-. ++|..|.++
T Consensus 207 ~qavLiN~LLr~yL~n--------~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiq---------ldYssA~~~ 269 (493)
T KOG2581|consen 207 GQAVLINLLLRNYLHN--------KLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQ---------LDYSSALEY 269 (493)
T ss_pred hHHHHHHHHHHHHhhh--------HHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhh---------cchhHHHHH
Confidence 222 2244444433 458888888776642 111 2244567788888877 999999999
Q ss_pred HHHHHhchhcCCCh
Q 020060 206 YQNAEKDERMKSNP 219 (331)
Q Consensus 206 ~~~al~~~~~~~~~ 219 (331)
+-+|+... |.+.
T Consensus 270 ~~qa~rka--pq~~ 281 (493)
T KOG2581|consen 270 FLQALRKA--PQHA 281 (493)
T ss_pred HHHHHHhC--cchh
Confidence 99999844 7654
No 422
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=65.09 E-value=37 Score=22.32 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcCCCCcHH
Q 020060 237 RALSGFEASALKDPSLNAT 255 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~~~~ 255 (331)
+|+..+.+++...|+++..
T Consensus 31 ~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHhCCChHHH
Confidence 3334444445567777654
No 423
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=65.08 E-value=53 Score=24.19 Aligned_cols=45 Identities=18% Similarity=-0.011 Sum_probs=34.2
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFN 123 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 123 (331)
.+.. ...+.+++..+..++.++..+..+..+|... +..+.+.++.
T Consensus 20 ~~~~-~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 20 RNLL-EELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred CCcH-HHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 4564 8899999999998888888888888888764 4556666666
No 424
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=64.54 E-value=1.5e+02 Score=29.05 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=37.7
Q ss_pred HHHHHHHHhhhhccCCCCccchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHH
Q 020060 14 KAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKA 91 (331)
Q Consensus 14 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 91 (331)
.++..+..+.+.++. ++...+.....+++.. ..+++..+-....++|+.+|+| ++|+++--.+
T Consensus 23 ~Al~~in~vVd~~Wp--------EIsd~l~~IE~lyed~------~F~er~~AaL~~SKVyy~Lgey-e~Al~yAL~a 85 (929)
T KOG2062|consen 23 HALFKINNVVDQFWP--------EISDSLPKIESLYEDE------TFPERQLAALLASKVYYYLGEY-EDALEYALRA 85 (929)
T ss_pred HHHHHHHHHHHHhhH--------HhhhhHHHHHHHhccC------CCchhHHHHHHHHHHHHHHHHH-HHHHHHHHcC
Confidence 344444445555543 3334444444444432 2234444555778999999999 9999988776
No 425
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.93 E-value=1e+02 Score=27.02 Aligned_cols=27 Identities=19% Similarity=-0.063 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
..+.+|.-|+..+|++.|.--|+++.+
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~ 153 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANE 153 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence 446677778888888888888888754
No 426
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=63.65 E-value=29 Score=25.25 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=42.8
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---------------ADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
+.++|...+..+++ -.++-+|++|+.+..+. .....+||..+...|+.+-.++|++-|-
T Consensus 4 htllAd~a~~~~~~-l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 4 HTLLADQAFKEADP-LRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHhhcccH-HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 44667777777886 77888888888753221 2356788888999999988888887653
No 427
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.31 E-value=94 Score=26.10 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=57.5
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh---
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK--- 211 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--- 211 (331)
..++..+...++........-...|++.- +.-...-.++..+..+|..+... |++.+|..+|-.+-.
T Consensus 52 ~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e---------~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 52 IARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKE---------GNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp HHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHT---------T-HHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhh---------ccHHHHHHHHHhcCChhH
Confidence 34455555555433222333345555555 22222234678889999999887 888888777643211
Q ss_pred -----------chhcCCChhHHhhHHHH-HHHhhcHHHHHHHHHHHHhc
Q 020060 212 -----------DERMKSNPDLYFNCATV-NKYLENYERALSGFEASALK 248 (331)
Q Consensus 212 -----------~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~ 248 (331)
....|...+.+...|.+ |...++...|...+..-.+.
T Consensus 122 ~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 122 FAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 11235556666666655 56789999998877666654
No 428
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=62.05 E-value=1.4e+02 Score=27.90 Aligned_cols=150 Identities=11% Similarity=0.003 Sum_probs=87.4
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
...+.+.. ..+..+++.++.||.+. ..++-...+++.++.+-++ ..-..++..|-.. +...+..+|.+
T Consensus 88 ~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEki---------k~sk~a~~f~K 156 (711)
T COG1747 88 LCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEKI---------KKSKAAEFFGK 156 (711)
T ss_pred HHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHHh---------chhhHHHHHHH
Confidence 33344433 34466788888888887 5667777788888877666 4444566666543 47788888888
Q ss_pred HhcCC-C-----CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH-hhHHHHHHHhhcHHHH
Q 020060 166 AITLD-V-----KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-FNCATVNKYLENYERA 238 (331)
Q Consensus 166 al~~~-p-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~~la~~~~~~g~~~~A 238 (331)
++... | .-.+.|-.+-..- | .+.+.-+....+.-... ......+. -.+-.-|....++.+|
T Consensus 157 a~yrfI~~~q~~~i~evWeKL~~~i-------~----dD~D~fl~l~~kiqt~l-g~~~~~Vl~qdv~~~Ys~~eN~~ea 224 (711)
T COG1747 157 ALYRFIPRRQNAAIKEVWEKLPELI-------G----DDKDFFLRLQKKIQTKL-GEGRGSVLMQDVYKKYSENENWTEA 224 (711)
T ss_pred HHHHhcchhhhhhHHHHHHHHHHhc-------c----ccHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHhccccCHHHH
Confidence 87542 2 1123443333211 1 34444444433333211 12222332 2223445567889999
Q ss_pred HHHHHHHHhcCCCCcHH-HHHH
Q 020060 239 LSGFEASALKDPSLNAT-EEVQ 259 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~-~~l~ 259 (331)
+......++.+..+..+ ..+-
T Consensus 225 i~Ilk~il~~d~k~~~ar~~~i 246 (711)
T COG1747 225 IRILKHILEHDEKDVWARKEII 246 (711)
T ss_pred HHHHHHHhhhcchhhhHHHHHH
Confidence 99999999999887765 4433
No 429
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=60.45 E-value=87 Score=26.35 Aligned_cols=115 Identities=10% Similarity=0.028 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCC-ChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSW-DHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNK 230 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~ 230 (331)
.-.|+..+...+.-.|.+..+...-+.+.....+....| ..-..+.|.+...+|+-......+. -+.+..+..|+
T Consensus 11 ~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~ 90 (368)
T COG5091 11 PLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFF 90 (368)
T ss_pred hHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhh
Confidence 445666777777777777665554444444443322222 1135678888888888532112222 23577888899
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 020060 231 YLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIEN 270 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~ 270 (331)
...+|+.|..+|..|+.+..++....+-.++-..+....+
T Consensus 91 ~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~k 130 (368)
T COG5091 91 NIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNK 130 (368)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhH
Confidence 9999999999999999986665544444444444444333
No 430
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.02 E-value=24 Score=22.45 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=13.7
Q ss_pred HHHHHHHhCChhHHHHHHHHHHh
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
.|.-.-..|++++|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444556677777666666653
No 431
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.84 E-value=2.6e+02 Score=32.84 Aligned_cols=118 Identities=19% Similarity=0.247 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CC--
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----GD-- 114 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~-- 114 (331)
.+...+++++...-. .-.....+..+...|......|++ ++|-..|..|++++...+.+|..-|...... +.
T Consensus 2790 e~~~gLevi~sTNl~-yF~~~q~aeff~lkG~f~~kL~~~-eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni 2867 (3550)
T KOG0889|consen 2790 ELKTGLEVIESTNLM-YFSDRQKAEFFTLKGMFLEKLGKF-EEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNI 2867 (3550)
T ss_pred HHHHHHHHHhcccHH-HHhhHHHHHHHHhhhHHHHHhcCc-chhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCccc
Confidence 444555555543310 003346788899999999999997 9999999999999999999999988776543 22
Q ss_pred --hhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 115 --LPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 115 --~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
-..|+.+|-+|.....+..+.-.++.+++-+. +++|....-++++.
T Consensus 2868 ~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls---------~dda~~~l~~~~~k 2915 (3550)
T KOG0889|consen 2868 SFACNAVSCYLQAARLYNSSKARKLIAKVLWLLS---------FDDSLGTLGDVFDK 2915 (3550)
T ss_pred HHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH---------hccccchHHHHHHH
Confidence 24688888888877766666666777777663 55665555555543
No 432
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.60 E-value=2e+02 Score=28.98 Aligned_cols=174 Identities=13% Similarity=-0.031 Sum_probs=99.6
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHh----cCCCcHHHHHHHHHHHHHhCCh--hHHHHHHHHHHhcCCCh--HHH--
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVK----LNPSLADAWLCLGSCIWKKGDL--PAAKNCFNLALSKGPNK--KIL-- 135 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~--~~~-- 135 (331)
-+..+...|...|.+ ++|+..+.+... .++...+.+-..-...-..+.. +-..++-.-.+..+|.. ..+
T Consensus 506 ~y~~Li~LY~~kg~h-~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 506 KYRELIELYATKGMH-EKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred cHHHHHHHHHhccch-HHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 356677888888885 889999988887 3333444444444444444544 55666666666666665 111
Q ss_pred --------hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH-
Q 020060 136 --------CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA- 205 (331)
Q Consensus 136 --------~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~- 205 (331)
.....++..+ .....+-++.+++.++..+.. ....+..+...|........ ...++-+++.+.
T Consensus 585 ~~~~~~~sis~~~Vl~~l------~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~-~~~~kg~e~~E~~ 657 (877)
T KOG2063|consen 585 EDKQEAESISRDDVLNYL------KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQA-STDGKGEEAPETT 657 (877)
T ss_pred cChhhhccCCHHHHHHHh------hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhcc-Cchhccccchhhh
Confidence 1123333333 234566788888888876654 44556666666665532111 011222344444
Q ss_pred -HHHHHhc---h--hcC-------CChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 206 -YQNAEKD---E--RMK-------SNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 206 -~~~al~~---~--~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
.++.... . -.| .....|...+.++.++|+.++|+..|-.-+.
T Consensus 658 ~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 658 VREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 2222210 0 001 1134578888888899999998887776664
No 433
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=59.31 E-value=25 Score=31.25 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC------------hhHHHHHHHHHHhc
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD------------LPAAKNCFNLALSK 128 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~ 128 (331)
..|+.++++|.. .+.|+.|..+|.++...|+ |.+|...+.+|-..
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 456666666655 4567777777777776665 45666666666443
No 434
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.95 E-value=1.9e+02 Score=28.65 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
+.+.-|+.+.+.... ++...+.++...|..++..|+| ++|...|-+++..
T Consensus 348 ~ly~~Ai~LAk~~~~----d~d~~~~i~~kYgd~Ly~Kgdf-~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHL----DEDTLAEIHRKYGDYLYGKGDF-DEATDQYIETIGF 397 (933)
T ss_pred hhHHHHHHHHHhcCC----CHHHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHccc
Confidence 455667777665543 5567788899999999999998 9999999998874
No 435
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=58.87 E-value=50 Score=21.78 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHh
Q 020060 200 LQSLKAYQNAEK 211 (331)
Q Consensus 200 ~~A~~~~~~al~ 211 (331)
..|+....+|+.
T Consensus 4 ~~a~~l~~~Ave 15 (77)
T cd02683 4 LAAKEVLKRAVE 15 (77)
T ss_pred HHHHHHHHHHHH
Confidence 455666666665
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.43 E-value=70 Score=23.38 Aligned_cols=85 Identities=14% Similarity=0.121 Sum_probs=57.3
Q ss_pred cchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHH
Q 020060 33 DKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK--LNPSLADAWLCLGSCIW 110 (331)
Q Consensus 33 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~ 110 (331)
+..+.+..-++.++..+..... -.+.+....+|...+... ..+.+.|..... +....+..|...|..+.
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~--Y~nD~RylkiWi~ya~~~-------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le 110 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDER--YKNDERYLKIWIKYADLS-------SDPREIFKFLYSKGIGTKLALFYEEWAEFLE 110 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGG--GTT-HHHHHHHHHHHTTB-------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhhhHh--hcCCHHHHHHHHHHHHHc-------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 3456677788888888876541 013334455555555432 245555555544 56678999999999999
Q ss_pred HhCChhHHHHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLAL 126 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al 126 (331)
..|++++|...|+.++
T Consensus 111 ~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 111 KRGNFKKADEIYQLGI 126 (126)
T ss_dssp HTT-HHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHhhC
Confidence 9999999999999875
No 437
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=58.28 E-value=1.4e+02 Score=28.66 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
+++.+|....++-- .--+++|+-.|..+....+|++|.+.|.+|=
T Consensus 787 ~~W~eAFalAe~hP-----e~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHP-----EFKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred ccchHhHhhhhhCc-----cccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 77777766555421 3345678888888888888888888887763
No 438
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.21 E-value=1e+02 Score=25.23 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+...+|+...+.-++.+ |.+......+-..+.-.|++++|..-++-+-.+.|+....
T Consensus 15 ~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 15 NSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred ccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 78899999999999854 9999998889999999999999999999999999987653
No 439
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.19 E-value=99 Score=27.42 Aligned_cols=47 Identities=13% Similarity=0.004 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
..+-+|+..++.++..+|.+......+..+|..+ |-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~L---------G~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLL---------GAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHhc
Confidence 4588999999999999999999999999999999 9999999999753
No 440
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=57.64 E-value=1.1e+02 Score=25.43 Aligned_cols=177 Identities=12% Similarity=0.027 Sum_probs=90.2
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhc-CC--CcHHHHHHHHHHHHH-hCChhHHHHHHHHHHhcC--CChHHHhhHHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKL-NP--SLADAWLCLGSCIWK-KGDLPAAKNCFNLALSKG--PNKKILCQLSML 141 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~-~p--~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~--~~~~~~~~l~~~ 141 (331)
..++.+....++| ++.+.++++++.. +| -..+=...+..+|-. .|....+.+.+...-+.. ..+.....+..-
T Consensus 5 v~~Aklaeq~eRy-ddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 5 VYMAKLAEQAERY-EEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHhcCH-HHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Confidence 3467778888998 9999999999887 44 345555666666643 477777777776532221 111111111111
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHhhhhhcCCCC-hhhHHHHHHHHHHHHhc---h
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDG----NSWYNLGNACLTSFFVTGSWD-HSKLLQSLKAYQNAEKD---E 213 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~---~ 213 (331)
+...= ...-..--.+.+..+...+--...++ ..+-..|..|...+-...... ..-.++|...|+.|... .
T Consensus 84 yr~ki--e~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~ 161 (244)
T smart00101 84 YRGKI--ETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAE 161 (244)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 11100 00000112233333333222122221 122334555554422221000 01256888889888863 2
Q ss_pred hcCCChhH---HhhHHHHHH-HhhcHHHHHHHHHHHHh
Q 020060 214 RMKSNPDL---YFNCATVNK-YLENYERALSGFEASAL 247 (331)
Q Consensus 214 ~~~~~~~~---~~~la~~~~-~~g~~~~A~~~~~~al~ 247 (331)
..|.+|.- ..|.+..|+ -+++.++|...-++++.
T Consensus 162 L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 162 LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34666633 466666665 46888888876666654
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.19 E-value=67 Score=32.92 Aligned_cols=40 Identities=30% Similarity=0.308 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQL 138 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 138 (331)
+...+.+|.+|...|...+|+.+|.+|..-..+..++..+
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~l 959 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKL 959 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHH
Confidence 4456788999999999999999999998665554444443
No 442
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=56.73 E-value=27 Score=17.98 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.|..+-.++... |+++.|...|+.-.+.
T Consensus 3 ty~~ll~a~~~~---------g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKA---------GDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHC---------CCHHHHHHHHHHHHHh
Confidence 466677777777 9999999999887653
No 443
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.68 E-value=66 Score=22.50 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=35.7
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+--|..+..+|..|...|+.+.|..-|+.--.+.|.+...
T Consensus 68 ~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 68 GAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 35567789999999999999999999999999999987653
No 444
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=56.12 E-value=13 Score=32.39 Aligned_cols=69 Identities=23% Similarity=0.232 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
...+++.+-+.. +.+..|+....-++..+ +....+++.++..+....++++|+..++.+....|++...
T Consensus 277 ~~~n~~~~~lk~---------~~~~~a~~~~~~~~~~~--~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 277 IRRNLAAVGLKV---------KGRGGARFRTNEALRDE--RSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred cccchHHhcccc---------cCCCcceeccccccccC--hhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 334466666655 77777777777676643 7788889999999999999999999999999999998764
No 445
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=55.85 E-value=24 Score=23.46 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=10.4
Q ss_pred HHHHhCChhHHHHHHHHHHh
Q 020060 108 CIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~ 127 (331)
.+-..|+.++|+.+|++++.
T Consensus 17 ~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 17 RADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred hhhhcCCHHHHHHHHHHHHH
Confidence 33344555555555555543
No 446
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.73 E-value=1.2e+02 Score=25.01 Aligned_cols=165 Identities=11% Similarity=0.068 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-hhHH
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-NSWY 178 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~ 178 (331)
+..+|.+..+.|+|++.+.+..+++..++.- .-...++.++...= +....+...+....+.....+ ....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i-------~~~R~s~R~l~~~e~~~~~~~~~~~~ 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVI-------GSRRASWRILSSIEQKEENKGNEKQV 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhcc-------ccchHHHHhhhhHhhhhcccchhHHH
Confidence 5678999999999999999999999998765 44555666665431 234555555554444333221 1222
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH----HhhHHHHHHHh-----h-----cHHHHHHHHHH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL----YFNCATVNKYL-----E-----NYERALSGFEA 244 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~----~~~la~~~~~~-----g-----~~~~A~~~~~~ 244 (331)
.+..-|....... -..--.+.+...++.+-.. ..+++. +-..|..|... | -.+.|...|++
T Consensus 77 ~~i~~yk~kie~E---L~~~C~eii~lId~~Lip~--~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~ 151 (236)
T PF00244_consen 77 KLIKDYKKKIEDE---LIDICNEIIRLIDKSLIPS--ATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEE 151 (236)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHTCHHH--S-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhh
Confidence 2222222110000 0011123333344333211 223322 23345555422 2 24678888888
Q ss_pred HHh-----cCCCCcHH----HHHHHHH-HHHHHHHHHHHhhhhh
Q 020060 245 SAL-----KDPSLNAT----EEVQMMV-NLLDKIENLLKGHAKT 278 (331)
Q Consensus 245 al~-----~~~~~~~~----~~l~~~~-~~l~~~~~a~~~~~~a 278 (331)
|+. +.|.++.. .+.+..+ ..+++..+|++...+|
T Consensus 152 A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 152 ALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 886 46777764 2222222 3366777776544443
No 447
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=53.08 E-value=34 Score=18.21 Aligned_cols=26 Identities=12% Similarity=0.187 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHhcCCChHHHhhHH
Q 020060 114 DLPAAKNCFNLALSKGPNKKILCQLS 139 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~~~~~~l~ 139 (331)
.++.|...|++.+...|+...|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 45667777777777776665555544
No 448
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.55 E-value=34 Score=32.21 Aligned_cols=97 Identities=10% Similarity=0.016 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
+-+...+.++|+++.++. .-.+.|+ +.. |+++.|.....+ .++..-|-.||.+....|++
T Consensus 623 Fle~~g~~e~AL~~s~D~-d~rFela---l~l---------grl~iA~~la~e-------~~s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDP-DQRFELA---LKL---------GRLDIAFDLAVE-------ANSEVKWRQLGDAALSAGEL 682 (794)
T ss_pred HhhhccchHhhhhcCCCh-hhhhhhh---hhc---------CcHHHHHHHHHh-------hcchHHHHHHHHHHhhcccc
Confidence 334444555666665543 2233333 334 788877665433 45666799999999999999
Q ss_pred HHHHHHHHHHHhcCC--------CCcHH-HHHHHHHHHHHHHHHHH
Q 020060 236 ERALSGFEASALKDP--------SLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 236 ~~A~~~~~~al~~~~--------~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
..|.++|.++..... .+... ..++..-...|+..-|.
T Consensus 683 ~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF 728 (794)
T KOG0276|consen 683 PLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF 728 (794)
T ss_pred hhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH
Confidence 999999999976432 22222 55555555666665555
No 449
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=52.43 E-value=80 Score=23.10 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC---CCh----------hHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK---SNP----------DLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~----------~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
+..+|...... +++-.++-.|++|+.....- ... ....|+|..+..+|+.+=.++|++
T Consensus 4 htllAd~a~~~---------~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq 74 (140)
T PF10952_consen 4 HTLLADQAFKE---------ADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ 74 (140)
T ss_pred HHHHHHHHhhc---------ccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence 34556666655 78888888888888632111 111 126899999999999999999987
Q ss_pred HH----HhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhh
Q 020060 244 AS----ALKDPSLNATEEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 244 ~a----l~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
-| +.+-|.-+.. .-......+|-...|+-.|.|
T Consensus 75 lASE~VltLiPQCp~~-~C~afi~sLGCCk~ALl~F~K 111 (140)
T PF10952_consen 75 LASEKVLTLIPQCPNT-ECEAFIDSLGCCKKALLDFMK 111 (140)
T ss_pred HHHHHHHHhccCCCCc-chHHHHHhhhccHHHHHHHHH
Confidence 65 4466764432 111223455666666655554
No 450
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.04 E-value=1.8e+02 Score=26.21 Aligned_cols=159 Identities=14% Similarity=0.033 Sum_probs=94.9
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC--Ch-----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP--NK----- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~----- 132 (331)
.-+.+..+|..|...|++ +.|+.+|.++-..... .+..|.++-.+-...|+|..-..+-.++...-. .+
T Consensus 149 iRra~~Dl~dhy~~cG~l-~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v 227 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQL-DNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEV 227 (466)
T ss_pred HHHHHHHHHHHHHHhccH-HHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhc
Confidence 356788899999999997 9999999996554433 366788888888889999888888777765410 00
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
...+.-|.+...+ ++|+.|.++|-.+..- .|.+..+|..|. .+.. |++.++...
T Consensus 228 ~~kl~C~agLa~L~l--------kkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc--ALAt------fdr~~Lk~~ 291 (466)
T KOG0686|consen 228 PAKLKCAAGLANLLL--------KKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC--ALAT------FDRQDLKLN 291 (466)
T ss_pred CcchHHHHHHHHHHH--------HHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH--hhcc------CCHHHHHHH
Confidence 2333344444444 3588888888765432 233333433332 2222 133444322
Q ss_pred H---HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 203 L---KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 203 ~---~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
+ ..|..-+ .-.|..+-.++..| .++|...++.+++.
T Consensus 292 vi~n~~Fk~fl-----el~Pqlr~il~~fy--~sky~~cl~~L~~~ 330 (466)
T KOG0686|consen 292 VIKNESFKLFL-----ELEPQLREILFKFY--SSKYASCLELLREI 330 (466)
T ss_pred HHcchhhhhHH-----hcChHHHHHHHHHh--hhhHHHHHHHHHHh
Confidence 1 2233333 23344444454443 45788777777664
No 451
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.57 E-value=2.2e+02 Score=27.01 Aligned_cols=163 Identities=10% Similarity=0.047 Sum_probs=94.8
Q ss_pred hCChhHHHHHHHHHHhcCC------------Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC---------
Q 020060 112 KGDLPAAKNCFNLALSKGP------------NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------- 169 (331)
Q Consensus 112 ~g~~~~A~~~~~~al~~~~------------~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------- 169 (331)
..-|++|...|.-+....+ .+ ..+..++.+....|+... ..+-.+.++-.+.+++.-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~-aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREM-AADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHhccccccccccc
Confidence 3558889888888876543 22 566778888887775222 234466777777777652
Q ss_pred -----CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHH-HHhhcHHHHHHHH
Q 020060 170 -----DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVN-KYLENYERALSGF 242 (331)
Q Consensus 170 -----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~-~~~g~~~~A~~~~ 242 (331)
.|.+...|..+-. |+. ... .+|-+..|++++.-.++++ |. ||-+...+-.+| .+..+|.=-+..+
T Consensus 330 RL~y~~~eNR~FyL~l~r-~m~-~l~----~RGC~rTA~E~cKlllsLd--p~eDPl~~l~~ID~~ALrareYqwiI~~~ 401 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFR-YMQ-SLA----QRGCWRTALEWCKLLLSLD--PSEDPLGILYLIDIYALRAREYQWIIELS 401 (665)
T ss_pred cCcccchhhHHHHHHHHH-HHH-HHH----hcCChHHHHHHHHHHhhcC--CcCCchhHHHHHHHHHHHHHhHHHHHHHH
Confidence 1222222211111 111 011 2288999999999999965 77 776544333333 3445555444444
Q ss_pred HHH-----HhcCCCCcHHHHHHHHHHHHHH---HHHHHHhhhhhhhHHH
Q 020060 243 EAS-----ALKDPSLNATEEVQMMVNLLDK---IENLLKGHAKTKRVAS 283 (331)
Q Consensus 243 ~~a-----l~~~~~~~~~~~l~~~~~~l~~---~~~a~~~~~~a~~l~~ 283 (331)
+.. +..-|+......++..+..... -..|...+.+|.++-+
T Consensus 402 ~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 402 NEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 443 4456776665666666554444 3456677888887766
No 452
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=51.51 E-value=1e+02 Score=23.08 Aligned_cols=50 Identities=26% Similarity=0.226 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
|+-++--..+....+. ...+|+.+..+|.+|.+.|+..+|...+.+|=+.
T Consensus 100 ~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 100 GKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp T-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4444444445544442 2678899999999999999999999999887543
No 453
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=50.20 E-value=40 Score=22.18 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=10.2
Q ss_pred HHhCChhHHHHHHHHHHh
Q 020060 110 WKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~ 127 (331)
-..|+|++|+.+|..+++
T Consensus 17 D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 17 DQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHccCHHHHHHHHHHHHH
Confidence 445566666666655543
No 454
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=1e+02 Score=26.65 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhc
Q 020060 156 VEESIQHAKEAIT 168 (331)
Q Consensus 156 ~~~A~~~~~~al~ 168 (331)
..+|+.+..+|++
T Consensus 7 l~kaI~lv~kA~~ 19 (439)
T KOG0739|consen 7 LQKAIDLVKKAID 19 (439)
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444444
No 455
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=48.94 E-value=1.1e+02 Score=22.88 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 85 EDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 85 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
...+....+.....+..+..+|.+|...|+..+|-+.+++|.+..
T Consensus 106 dki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 106 DKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444443344567777788888888888888888887776544
No 456
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=48.90 E-value=2e+02 Score=25.78 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=39.8
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcCCC-----cHHHHHHH--HHHHHHhCChhHHHHHHHH
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLNPS-----LADAWLCL--GSCIWKKGDLPAAKNCFNL 124 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l--g~~~~~~g~~~~A~~~~~~ 124 (331)
.+..++..++| ..|...|.+++...+. ....+..+ |..++..-++++|.+++++
T Consensus 136 ~~r~l~n~~dy-~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDY-LFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcCh-HHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45567888999 9999999999987542 23344444 4445677889999999986
No 457
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.56 E-value=85 Score=22.17 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=11.5
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
..|......|+| ..|.+.+.++-+.
T Consensus 64 ~~Gl~al~~G~~-~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDW-QRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHhc
Confidence 334444444454 4455554444444
No 458
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.62 E-value=1.8e+02 Score=24.95 Aligned_cols=105 Identities=8% Similarity=0.012 Sum_probs=70.1
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC---cHH---HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS---LAD---AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK- 132 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~- 132 (331)
......++.++|..|...++- +.+.+.+.+.+.-.-. ..+ .-..+|.+|..+.-.++.++...-.++...+.
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~-~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDI-QNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 346678899999999999995 8899888877664321 122 33556777766666677777777777766554
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
..-...|...+.. .+|.+|-..+...+......
T Consensus 190 RrNRyK~Y~Gi~~m~~--------RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 190 RRNRYKVYKGIFKMMR--------RNFKEAAILLSDILPTFESS 225 (412)
T ss_pred hhhhHHHHHHHHHHHH--------HhhHHHHHHHHHHhcccccc
Confidence 2222244444422 46999999998888765443
No 459
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.95 E-value=47 Score=21.88 Aligned_cols=15 Identities=20% Similarity=0.532 Sum_probs=6.2
Q ss_pred HhCChhHHHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLA 125 (331)
Q Consensus 111 ~~g~~~~A~~~~~~a 125 (331)
..|++++|+.+|..+
T Consensus 18 ~~g~y~eAl~~Y~~a 32 (77)
T cd02683 18 QEGRFQEALVCYQEG 32 (77)
T ss_pred HhccHHHHHHHHHHH
Confidence 334444444444333
No 460
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=46.92 E-value=43 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.050 Sum_probs=27.3
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
..+|..+...|++++|..+|-+|+.+.|+...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 56888899999999999999999999998653
No 461
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.14 E-value=1.9e+02 Score=24.81 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhc----CC--CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHH---hhHHHHHHHhccC
Q 020060 82 KDAEDHLSKAVKL----NP--SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KIL---CQLSMLERSMAQG 148 (331)
Q Consensus 82 ~~A~~~~~~al~~----~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~---~~l~~~~~~~g~~ 148 (331)
++-++-+.+.++- +. ...++|.++|..|.+.++.+.+.+...+.+...-.. +.+ ..+|.++...
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~--- 168 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDR--- 168 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccH---
Confidence 4455556555543 21 236899999999999999999999998887655332 332 3355555533
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 149 SENQAEIVEESIQHAKEAITLDVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 149 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.-.++.++.....++...+- -..-...|...+.. .++.+|...+..++.
T Consensus 169 -----~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~---------RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 169 -----KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMR---------RNFKEAAILLSDILP 220 (412)
T ss_pred -----HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHH---------HhhHHHHHHHHHHhc
Confidence 33667777777766654321 11223345555544 788888777776663
No 462
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.73 E-value=77 Score=20.08 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=9.3
Q ss_pred HhhcHHHHHHHHHHHHh
Q 020060 231 YLENYERALSGFEASAL 247 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~ 247 (331)
..|++++|+.+|.+++.
T Consensus 17 ~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIE 33 (69)
T ss_dssp HTTSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 34555655555555543
No 463
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=45.21 E-value=2.3e+02 Score=25.41 Aligned_cols=55 Identities=11% Similarity=-0.030 Sum_probs=39.8
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
.+.-.+..++|..|...|..++...+.. ..+..++..|.... .=++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD------~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWD------RFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHH------ccCHHHHHHHHhh
Confidence 4557789999999999999999876432 34455666555442 1358899999986
No 464
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.19 E-value=5.1e+02 Score=29.43 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=54.4
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
..++.|...|.+.... |+++-|-.+.-+|.+ ..-+.++...|..+...|+-..|+..+++.+..
T Consensus 1668 ~~ge~wLqsAriaR~a---------G~~q~A~nall~A~e----~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLA---------GHLQRAQNALLNAKE----SRLPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hhHHHHHHHHHHHHhc---------ccHHHHHHHHHhhhh----cccchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456777888877766 999999988888876 557888999999999999999999999999964
No 465
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=44.28 E-value=89 Score=24.72 Aligned_cols=20 Identities=25% Similarity=0.298 Sum_probs=9.6
Q ss_pred hhhcccccHHHHHHHHHHHHh
Q 020060 73 ILDVVPEYRKDAEDHLSKAVK 93 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~ 93 (331)
++...|.| ++|.+.+++...
T Consensus 120 VCm~~g~F-k~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEF-KKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCch-HHHHHHHHHHhc
Confidence 34444444 445555554444
No 466
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=44.16 E-value=69 Score=23.30 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+|..+...|++++|..+|-+|+...|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 457888888888888888888888888775
No 467
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.93 E-value=2.2e+02 Score=24.83 Aligned_cols=93 Identities=8% Similarity=-0.031 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC--C----hhHHhhHHHHHHHhhcHHHHHHHHHHHHh-
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS--N----PDLYFNCATVNKYLENYERALSGFEASAL- 247 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~- 247 (331)
.....|+.+|... ++|..|...+.-.-... .+. + ...+..+|..|...++..+|..+..++--
T Consensus 104 ~irl~LAsiYE~E---------q~~~~aaq~L~~I~~~t-g~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 104 SIRLHLASIYEKE---------QNWRDAAQVLVGIPLDT-GQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHh---------hhHHHHHHHHhccCccc-chhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 3456788888888 99998877765432211 011 1 13378999999999999999998887743
Q ss_pred -cCCCCcHH-----HHHHHHHHHHHHHHHHHHhhhh
Q 020060 248 -KDPSLNAT-----EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 248 -~~~~~~~~-----~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
.+..+... .-.++++...+++-+|-+.|.+
T Consensus 174 ~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 174 QAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred hhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344442 4456777777888887766553
No 468
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=43.70 E-value=1.5e+02 Score=27.92 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhch-hcCCCh--hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 200 LQSLKAYQNAEKDE-RMKSNP--DLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 200 ~~A~~~~~~al~~~-~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..++..|.+++... ...+|. --|..+|-.+++.++|.+|+.++..+-..-..
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577777777521 112233 33789999999999999999999988765444
No 469
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=42.83 E-value=1.9e+02 Score=28.35 Aligned_cols=90 Identities=16% Similarity=0.102 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCCCC----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH
Q 020060 156 VEESIQHAKEAITLDVKD----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY 231 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~ 231 (331)
+..+.--|..++.+-|.+ .....+.+.++..+ ..+++.+++.-..-++... |....++...+.+|..
T Consensus 69 ~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~-------~l~~~~~~~~E~~la~~~~--p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 69 YEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQL-------GLGEYPKAIPECELALESQ--PRISKALLKRARKYEA 139 (748)
T ss_pred hhccchhhhhhheeccccchhhhhHHHHHHHHHhhc-------CccchhhhcCchhhhhhcc--chHHHHHhhhhhHHHH
Confidence 444544455555544422 22333444444444 3366666666666666533 6666666666666666
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcH
Q 020060 232 LENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+.++-|++...-....+|.+..
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcch
Confidence 66666666666666666666644
No 470
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.32 E-value=53 Score=25.89 Aligned_cols=52 Identities=13% Similarity=0.154 Sum_probs=39.2
Q ss_pred hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 224 NCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 224 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
....++.+.|.|++|.+.+++... +|++... ..+..+......+..-+..|.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqnFS 168 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQNFS 168 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHhcc
Confidence 345567899999999999999998 8877766 777777766666666665443
No 471
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.90 E-value=2.6e+02 Score=24.45 Aligned_cols=101 Identities=14% Similarity=0.098 Sum_probs=62.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHH--hcCC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLAL--SKGP 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~~ 130 (331)
...+.+...++.+|...++| ..|-..+. ++.++.. ....+..+|..|...++..+|..+..++- ..+.
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~-~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~ 177 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNW-RDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES 177 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc
Confidence 45566778899999999998 77766553 3333331 13467789999999999999999998873 2223
Q ss_pred Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 131 NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 131 ~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
.+ .....+-.++.+.-+ .+++|-+|...|-+..
T Consensus 178 ~Ne~Lqie~kvc~ARvlD----~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 178 SNEQLQIEYKVCYARVLD----YKRKFLEAAQRYYELS 211 (399)
T ss_pred cCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33 222222222222211 3345666666655543
No 472
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.33 E-value=3e+02 Score=25.15 Aligned_cols=102 Identities=6% Similarity=-0.115 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC----C------ChHHHhh--HHHHHHHhccC--chhHHHHHHHHHHHHHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKG----P------NKKILCQ--LSMLERSMAQG--SENQAEIVEESIQHAKEA 166 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~------~~~~~~~--l~~~~~~~g~~--~~~~~~~~~~A~~~~~~a 166 (331)
.++..|.+.+....|++|+.++-.|-+.. + ++.++.+ +.+||+.+.+. ..+...+...|.+.|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 44566777888889999988877764432 1 1223333 66777776543 233445577777777665
Q ss_pred hcC---------CCCCch------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 167 ITL---------DVKDGN------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 167 l~~---------~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.-- .+..|+ .+..-|.+.+.. |+-++|.++++.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHq---------g~~deAye~le~a~~ 295 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQ---------GQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHc---------CCcHHHHHHHHHHHH
Confidence 431 233332 233446666666 899999999998875
No 473
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.90 E-value=3.5e+02 Score=25.77 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhhhhccCCCCccchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHH
Q 020060 11 RATKAADDLYHVKETFFPANPDDKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSK 90 (331)
Q Consensus 11 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 90 (331)
+-..+++.+..+.+..++. +..++.....+.+... .+.+..+-..+..+|+.+|+| ++|+++--+
T Consensus 20 ~~~~Al~~In~~vDqlwpe--------Isddl~~Ie~lydd~s------f~~remaaL~~SKvYy~LgeY-~~Ai~yAL~ 84 (926)
T COG5116 20 RESEALDVINAHVDQLWPE--------ISDDLRYIEALYDDDS------FDPREMAALCLSKVYYVLGEY-QQAIEYALR 84 (926)
T ss_pred hHHHHHHHHHHHHHHhhhh--------hhchhhHHHHhhccCC------CCHHHHHHHHHHHHHHHHHhH-HHHHHHHHh
Confidence 3345666666676666542 2333333333333322 223333455678999999999 999998766
Q ss_pred HHh
Q 020060 91 AVK 93 (331)
Q Consensus 91 al~ 93 (331)
+=.
T Consensus 85 agd 87 (926)
T COG5116 85 AGD 87 (926)
T ss_pred cCC
Confidence 533
No 474
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=37.84 E-value=5e+02 Score=27.19 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=13.3
Q ss_pred hhhhHHHHHHHHHHhcCCC
Q 020060 35 VSKLQNESDLALRLLGSVP 53 (331)
Q Consensus 35 ~~~~~~~~~~a~~~l~~~~ 53 (331)
....-++++.|+..|..+.
T Consensus 889 ID~~L~ry~~AL~hLs~~~ 907 (1265)
T KOG1920|consen 889 IDDYLKRYEDALSHLSECG 907 (1265)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 3445577788888887765
No 475
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=36.79 E-value=11 Score=35.29 Aligned_cols=87 Identities=21% Similarity=0.151 Sum_probs=0.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHH--hcCCC-cHHHHHHHHHHHHHhCChhHHHHHHHHH--HhcCCCh-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV--KLNPS-LADAWLCLGSCIWKKGDLPAAKNCFNLA--LSKGPNK- 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~~~~- 132 (331)
.++........-+..+...|++ ..|...+.+.- .+.|. ........|.+....|+++.|+..+... ..+.+..
T Consensus 19 ~~~~~~~~~L~Aa~a~l~~g~~-~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~ 97 (536)
T PF04348_consen 19 SGEQRAQLLLLAARALLQEGDW-AQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQ 97 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHhHHHHHHHHHHHHHhCCCH-HHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHH
Confidence 3456677777788889999997 88998888765 23333 3455667788888999999999998742 2222222
Q ss_pred -HHHhhHHHHHHHhc
Q 020060 133 -KILCQLSMLERSMA 146 (331)
Q Consensus 133 -~~~~~l~~~~~~~g 146 (331)
..+...+.++...|
T Consensus 98 ~~~~~l~A~a~~~~~ 112 (536)
T PF04348_consen 98 ARYHQLRAQAYEQQG 112 (536)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHhcC
Confidence 34444666776554
No 476
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=34.78 E-value=1.8e+02 Score=21.28 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
++.+.|.-..........+..|...|..+...|++.+|...|+.
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 35566766665443355667788899999999999999998874
No 477
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.39 E-value=3.3e+02 Score=23.86 Aligned_cols=103 Identities=9% Similarity=0.021 Sum_probs=67.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-- 132 (331)
..-..++..+|..|...|+- +.|.+.+.+.....- +-.-....+|..|....-..+.++.....++...+.
T Consensus 101 ~ev~ea~~~kaeYycqigDk-ena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDK-ENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 45567889999999999995 999999888765432 112344567777776655555555555555555444
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
..-..-|...+.. .+|.+|-..|..++.....
T Consensus 180 rNRlKvY~Gly~msv--------R~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSV--------RNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhhHHHHHHHHHHHH--------HhHHHHHHHHHHHcccccc
Confidence 2222234444433 4699999999988876543
No 478
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=33.10 E-value=4.3e+02 Score=25.10 Aligned_cols=114 Identities=10% Similarity=-0.034 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcC
Q 020060 113 GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTG 192 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 192 (331)
|+.++|+...++-..-.+..-.....+.++...+. +....-..+++.++..+|........+...+.
T Consensus 323 ~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~------~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~------- 389 (547)
T PF14929_consen 323 GRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQ------NNSSVLSSCLEDCLKKDPTMSYSLERLILLHQ------- 389 (547)
T ss_pred ccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCc------ccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhh-------
Confidence 78888888887755444433333344555554431 23566778899999999987665555554443
Q ss_pred CCChhhHHHHHHHHHHHHh--chhcCCChhHHhhHHHHHHH-hhcHHHHHHHHHHHH
Q 020060 193 SWDHSKLLQSLKAYQNAEK--DERMKSNPDLYFNCATVNKY-LENYERALSGFEASA 246 (331)
Q Consensus 193 ~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al 246 (331)
....+...++ ++. .+.. ....+|..++.++.+ .++++.-.+..+.++
T Consensus 390 -----~~~~~~~Lle-~i~~~l~~~-~s~~iwle~~~~~l~~~~~~~~~~e~~~~~l 439 (547)
T PF14929_consen 390 -----KDYSAEQLLE-MIALHLDLV-PSHPIWLEFVSCFLKNPSRFEDKEEDHKSAL 439 (547)
T ss_pred -----hHHHHHHHHH-HHHHHhhcC-CCchHHHHHHHHHHhccccccccHHHHHHHH
Confidence 2333444444 332 2223 355668888888877 566654455555554
No 479
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=33.00 E-value=3.3e+02 Score=25.84 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 82 KDAEDHLSKAVKL-----NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 82 ~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
..++.+|.+++.. +..+...|..+|-.|++.++|.+|+.++-.+-..
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888764 2334567788999999999999999999888544
No 480
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=32.44 E-value=3.2e+02 Score=24.88 Aligned_cols=101 Identities=9% Similarity=-0.017 Sum_probs=57.1
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLA-------DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+..+|++ + | -.+-+++.|... .+-+..|.+|.-.++|.+|++.|-..+-.-... ...-..+..+-..
T Consensus 245 H~lLgDh-Q-a---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~i 319 (525)
T KOG3677|consen 245 HILLGDH-Q-A---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMI 319 (525)
T ss_pred HHHhhhh-H-h---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhh
Confidence 3346775 4 3 344455665432 122778999999999999999998887442222 2222233333333
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCC--chhHHHHHHHHHh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKD--GNSWYNLGNACLT 186 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~ 186 (331)
+ +..++--..+.-++...|.. ......++..|..
T Consensus 320 n-------Kq~eqm~~llai~l~~yPq~iDESi~s~l~Ek~~d 355 (525)
T KOG3677|consen 320 N-------KQNEQMHHLLAICLSMYPQMIDESIHSQLAEKYGD 355 (525)
T ss_pred h-------hhHHHHHHHHHHHHHhCchhhhHHHHHHHHHHhcc
Confidence 3 34555556666666666642 3345555555443
No 481
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=32.20 E-value=3.2e+02 Score=23.29 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhc-----cCchh---------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMA-----QGSEN---------QAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g-----~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
-...++.-++..|++ .++..+|..+...+ ..... .....+.|...+.+|++++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 444555556666755 55555555544331 11110 3345789999999999999998887776655
Q ss_pred HHH
Q 020060 183 ACL 185 (331)
Q Consensus 183 ~~~ 185 (331)
+-.
T Consensus 142 ~s~ 144 (277)
T PF13226_consen 142 ISA 144 (277)
T ss_pred HHh
Confidence 544
No 482
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=32.17 E-value=7.4e+02 Score=29.64 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
++.+...|..+.+.|+.++|-..|..|++++... .+|...|......-........--..|+.+|-+|...... ..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~-skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS-SKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc-hhhH
Confidence 4566778999999999999999999999998777 8888888776654321111112345788888888775532 2333
Q ss_pred HHHHHHHH
Q 020060 178 YNLGNACL 185 (331)
Q Consensus 178 ~~l~~~~~ 185 (331)
-.++.++.
T Consensus 2891 k~iakvLw 2898 (3550)
T KOG0889|consen 2891 KLIAKVLW 2898 (3550)
T ss_pred HHHHHHHH
Confidence 34444443
No 483
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.12 E-value=3.4e+02 Score=23.60 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~l~~~~~~l~~~~~a~ 272 (331)
.-..+|+++-.+++..+...+..++ ..-|..|+.||..+++...++... ...+.+...+.+.++..
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA----------~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK 72 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEA----------LRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLK 72 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHH----------HHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 3557888888888863311111111 123456677777777776555533 55556666666555443
No 484
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=31.60 E-value=2.6e+02 Score=27.02 Aligned_cols=165 Identities=10% Similarity=-0.002 Sum_probs=69.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA- 183 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~- 183 (331)
.-.++.-.|+|+.|+.++-+ ....+-+.+++.++..+..+ +.-.-..-...+..++.++.. .+++.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gL----------L~~~~~~~~~lls~~~~~~~~-ln~arLI 331 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGL----------LRVSDSSSAPLLSVDPGDPPP-LNFARLI 331 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT-----------------------------------HHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCC----------CCCCCccccceeeecCCCCCC-cCHHHHH
Confidence 34567788999999999987 22222224555555554433 222222114455555544332 333333
Q ss_pred --HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh-HHhhHHHHHHHhhcHHHHH-----------HHHHH---HH
Q 020060 184 --CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD-LYFNCATVNKYLENYERAL-----------SGFEA---SA 246 (331)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~-----------~~~~~---al 246 (331)
|... ....+..+|+++|--.-... .+.... .+-.+.......++++.=+ -.+++ .+
T Consensus 332 ~~Y~~~------F~~td~~~Al~Y~~li~~~~-~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li 404 (613)
T PF04097_consen 332 GQYTRS------FEITDPREALQYLYLICLFK-DPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI 404 (613)
T ss_dssp HHHHHT------TTTT-HHHHHHHHHGGGGS--SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG
T ss_pred HHHHHH------HhccCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc
Confidence 2222 12267888888887554311 111111 2334444444444333221 11222 22
Q ss_pred hcCCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhhc
Q 020060 247 LKDPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTKRVASLASSL 288 (331)
Q Consensus 247 ~~~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~~ 288 (331)
........ . ...+.-....|++++|+..|.-|.+....+.-+
T Consensus 405 ~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~ll 450 (613)
T PF04097_consen 405 KFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLL 450 (613)
T ss_dssp T-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHH
Confidence 23322222 2 666677788899999997777777666554443
No 485
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.06 E-value=3.3e+02 Score=22.83 Aligned_cols=142 Identities=17% Similarity=0.112 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHH----------------HhcCCCcHHH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKA----------------VKLNPSLADA 101 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~ 101 (331)
...-+..+++.- +... .+...+..+..+|..+...++| .+|..+|-.+ ..-.|...+.
T Consensus 69 r~~fi~~ai~WS-~~~~----~~~Gdp~LH~~~a~~~~~e~~~-~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl 142 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGS----YKFGDPELHHLLAEKLWKEGNY-YEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL 142 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-----TT--HHHHHHHHHHHHHTT-H-HHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH
T ss_pred HHHHHHHHHHHH-ccCC----CCCCCHHHHHHHHHHHHhhccH-HHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH
Confidence 444555666666 2222 4456788899999999999997 8888777321 1224555666
Q ss_pred HHHHHH-HHHHhCChhHHHHHHHHHHhc----CCC----------hHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 102 WLCLGS-CIWKKGDLPAAKNCFNLALSK----GPN----------KKILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 102 ~~~lg~-~~~~~g~~~~A~~~~~~al~~----~~~----------~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
+...|. .|...++...|...+..-.+. .|+ ...+.+....+...=+ ......|..-.+.|+..
T Consensus 143 fi~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e--~~~~~~F~~L~~~Y~~~ 220 (260)
T PF04190_consen 143 FIARAVLQYLCLGNLRDANELFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCE--RDNLPLFKKLCEKYKPS 220 (260)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHH--HT-HHHHHHHHHHTHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHh--cCcHHHHHHHHHHhCcc
Confidence 655554 456779999898877666655 332 1223332222221100 00223466666666776
Q ss_pred hcCCCCCchhHHHHHHHHHhh
Q 020060 167 ITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 167 l~~~p~~~~~~~~l~~~~~~~ 187 (331)
++.+|........+|..|+..
T Consensus 221 L~rd~~~~~~L~~IG~~yFgi 241 (260)
T PF04190_consen 221 LKRDPSFKEYLDKIGQLYFGI 241 (260)
T ss_dssp --HHHHTHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHHHHHCCC
Confidence 777777777888888888854
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.73 E-value=2e+02 Score=20.19 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+-.+..||.+|...|+-+.|..-|+.--.+.|..
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES 105 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPES 105 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccc
Confidence 3455556666666666666666666655556655
No 487
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=29.72 E-value=77 Score=27.39 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++|+..|++++... +.|..-+|+..|+.|+++.|+
T Consensus 17 kkA~~l~~~av~~E-----------------q~G~l~dai~fYR~AlqI~~d 51 (366)
T KOG2997|consen 17 KKAIALYEKAVLKE-----------------QDGSLYDAINFYRDALQIVPD 51 (366)
T ss_pred HHHHHHHHHHHHHh-----------------hcCcHHHHHHHHHhhhcCCch
No 488
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=28.94 E-value=5.2e+02 Score=24.74 Aligned_cols=76 Identities=4% Similarity=-0.022 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
..+++....+.-+-............+..+... +..++|-.+|++.+..+ ++ ..++..+.-+...|-
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~ 89 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDV---------NETERAYALYETLIAQN--ND--EARYEYARRLYNTGL 89 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhh---------hhhHhHHHHHHHHHHhC--Cc--chHHHHHHHHHhhhh
Confidence 366666665554443333444444555555555 88899999999998843 55 677888888888888
Q ss_pred HHHHHHHHH
Q 020060 235 YERALSGFE 243 (331)
Q Consensus 235 ~~~A~~~~~ 243 (331)
...|...++
T Consensus 90 ~~~~~~~~~ 98 (578)
T PRK15490 90 AKDAQLILK 98 (578)
T ss_pred hhHHHHHHH
Confidence 888887776
No 489
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=27.78 E-value=1.6e+02 Score=18.41 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=34.3
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCc-HH-----HHHHHHHHHHHhCChhHHHHHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSL-AD-----AWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~-----~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
..|..++..|+| =+|-+.++..-...+.. .. +....|..+.+.|+...|...+
T Consensus 4 ~~~~~l~n~g~f-~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 4 EEGIELFNAGDF-FEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHTT-H-HHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHcCCCH-HHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345667778888 88999999988765543 22 2233455667788888887653
No 490
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=27.21 E-value=5.5e+02 Score=24.44 Aligned_cols=115 Identities=16% Similarity=0.126 Sum_probs=67.6
Q ss_pred Hhhhhhhccc--ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHH---HHHhcCCChHHHhhHHHHHH
Q 020060 69 LKGKILDVVP--EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFN---LALSKGPNKKILCQLSMLER 143 (331)
Q Consensus 69 ~~g~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~---~al~~~~~~~~~~~l~~~~~ 143 (331)
..+.++...+ . ...-..+|+.+++.+|........+...+.. ...+...++ --+.+.|....|..++.++.
T Consensus 347 ~~~~lle~~d~~~-~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l 422 (547)
T PF14929_consen 347 LRAHLLEYFDQNN-SSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFL 422 (547)
T ss_pred HHHHHHHHhCccc-HHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 3444444444 3 3566788999999999887776666666555 334444444 22455577788989888888
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCC--CCCchhHHHHHHHHHhh
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLD--VKDGNSWYNLGNACLTS 187 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 187 (331)
..-........+...+.+++-..+... ..+..+|..+....-..
T Consensus 423 ~~~~~~~~~~e~~~~~l~vlf~~LDf~~~r~n~~aW~~l~~~l~~i 468 (547)
T PF14929_consen 423 KNPSRFEDKEEDHKSALKVLFEFLDFAGWRKNIQAWKLLAKKLPKI 468 (547)
T ss_pred hccccccccHHHHHHHHhcchhcccccccccccHHHHHHHHHhhHh
Confidence 732211112234445555444444432 34567777777766544
No 491
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.00 E-value=85 Score=25.81 Aligned_cols=23 Identities=13% Similarity=0.003 Sum_probs=16.2
Q ss_pred HhCChhHHHHHHHHHHhcCCChH
Q 020060 111 KKGDLPAAKNCFNLALSKGPNKK 133 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~~~~~~ 133 (331)
..++...|+.++++|++++|+..
T Consensus 190 d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 190 DAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred CcccHHHHHHHHHHHHHhCCCCC
Confidence 34566777888888887777763
No 492
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=26.79 E-value=6.6e+02 Score=25.19 Aligned_cols=160 Identities=13% Similarity=0.040 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
.+-+.-++.-+.+++.....+..|-.+.+..|++++-...-....++.|-. ..|.....-...+.. .....++.
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~-----s~~~~~v~ 170 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQ-----SEERKEVE 170 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----CcchhHHH
Confidence 456777777788888888888888889999999888777777777777776 555554444433331 13577888
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch---hcCC--ChhHHhhHHHHHHHhhcH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE---RMKS--NPDLYFNCATVNKYLENY 235 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~--~~~~~~~la~~~~~~g~~ 235 (331)
..|++++. +-+++..|...++......- .....++++.-...|.++++.- .... ....+..+-..|...-..
T Consensus 171 ~~~ekal~-dy~~v~iw~e~~~y~~~~~~--~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~ 247 (881)
T KOG0128|consen 171 ELFEKALG-DYNSVPIWEEVVNYLVGFGN--VAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQ 247 (881)
T ss_pred HHHHHHhc-ccccchHHHHHHHHHHhccc--cccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHH
Confidence 88888886 34566677766665543300 0011167788888888888621 0111 123355555556655556
Q ss_pred HHHHHHHHHHHhcC
Q 020060 236 ERALSGFEASALKD 249 (331)
Q Consensus 236 ~~A~~~~~~al~~~ 249 (331)
++-+.+|...+...
T Consensus 248 ~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 248 RQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHHHHHhcc
Confidence 77778888877765
No 493
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=26.06 E-value=1.9e+02 Score=18.66 Aligned_cols=15 Identities=20% Similarity=0.071 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHhc
Q 020060 198 KLLQSLKAYQNAEKD 212 (331)
Q Consensus 198 ~~~~A~~~~~~al~~ 212 (331)
.+++|+....++++.
T Consensus 4 ~~~~A~~li~~Av~~ 18 (77)
T smart00745 4 YLSKAKELISKALKA 18 (77)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677777777653
No 494
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.02 E-value=2e+02 Score=18.61 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=9.0
Q ss_pred HhhcHHHHHHHHHHHHh
Q 020060 231 YLENYERALSGFEASAL 247 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~ 247 (331)
..|++++|+.+|.+++.
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 18 NAGNYEEALRLYQHALE 34 (75)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 34555555555555543
No 495
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=24.17 E-value=3.2e+02 Score=20.72 Aligned_cols=33 Identities=9% Similarity=-0.077 Sum_probs=28.8
Q ss_pred HhhHHHHHHHhh-cHHHHHHHHHHHHhcCCCCcH
Q 020060 222 YFNCATVNKYLE-NYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 222 ~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 254 (331)
...+|..+...| +.++|..+|-+|+.+.|+-..
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 357899999999 999999999999999998653
No 496
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.99 E-value=3.4e+02 Score=24.90 Aligned_cols=95 Identities=14% Similarity=0.058 Sum_probs=56.2
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhc-----------CCCcHHHHHHHHHHHHHhCCh----------hHHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKL-----------NPSLADAWLCLGSCIWKKGDL----------PAAKNCFN 123 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~ 123 (331)
..++..|++.+....| ++|+.++-.|=+. -.+.+-....+.+||+...+. ..|.+.|.
T Consensus 164 lg~hekaRa~m~re~y-~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 164 LGLHEKARAAMEREMY-SEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HhHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 3455667778888888 8888877665443 233444556678889887663 23444444
Q ss_pred HHHh--------cC----CCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 124 LALS--------KG----PNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 124 ~al~--------~~----~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
++.- +. |.. ..+..-|.+.+..| +-++|.++++.+..
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg--------~~deAye~le~a~~ 295 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQG--------QRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcC--------CcHHHHHHHHHHHH
Confidence 4421 11 111 12223466667665 47788888887754
No 497
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.80 E-value=1.9e+02 Score=17.96 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
+...-.-+...|++++|.++..+...
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556778888888888777653
No 498
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=23.43 E-value=5.2e+02 Score=22.88 Aligned_cols=193 Identities=10% Similarity=-0.043 Sum_probs=105.8
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHh----cCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-----
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALS----KGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD----- 170 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~----~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~----- 170 (331)
..+...|+..++|.+|+......+. ++... ..+..-+.+++.+. +..+|...+..|-...
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~--------Nl~KakasLTsART~AnaiYc 203 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALR--------NLPKAKASLTSARTTANAIYC 203 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHh--------cchhHHHHHHHHHHhhccccc
Confidence 4577889999999999988776653 33333 45555666777663 5777777776664421
Q ss_pred CCCchhHH--HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhH---HhhHHHHHHHhhcHHHH--HHHH
Q 020060 171 VKDGNSWY--NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDL---YFNCATVNKYLENYERA--LSGF 242 (331)
Q Consensus 171 p~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~---~~~la~~~~~~g~~~~A--~~~~ 242 (331)
|....+-. .-|..+. +..+|.-|..+|-.+.+.-..- ++..+ +-.+-.+-...+..++- +-.-
T Consensus 204 pPqlQa~lDLqSGIlha---------~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~ 274 (411)
T KOG1463|consen 204 PPQLQATLDLQSGILHA---------AEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSA 274 (411)
T ss_pred CHHHHHHHHHhccceee---------cccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 11111111 1122222 2289999999999998721112 22333 33333344445555543 3333
Q ss_pred HHHHhcCCCCcHH-HHHHHHH--HHHHHHHHHHHhhhhhhhHHHHHhh--------ccccc---cCCCccccccchhhcc
Q 020060 243 EASALKDPSLNAT-EEVQMMV--NLLDKIENLLKGHAKTKRVASLASS--------LAVVK---LSSSHKRATVDLLSEG 308 (331)
Q Consensus 243 ~~al~~~~~~~~~-~~l~~~~--~~l~~~~~a~~~~~~a~~l~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~ 308 (331)
+.+++.......+ ...+.++ ..+.++..|+..|.+-+.-++++.. +-.++ +-.+|..+.++++..-
T Consensus 275 K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~~Lyd~lLEknl~riIEPyS~Vei~hIA~~ 354 (411)
T KOG1463|consen 275 KLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQSLYDNLLEKNLCRIIEPYSRVEISHIAEV 354 (411)
T ss_pred HHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHHHHHHHHHHHhHHHHcCchhhhhHHHHHHH
Confidence 4455555444444 5555544 4567788888777776655544332 11122 2344556666665554
Q ss_pred CCcC
Q 020060 309 LNKA 312 (331)
Q Consensus 309 ~~~~ 312 (331)
+.-+
T Consensus 355 IGl~ 358 (411)
T KOG1463|consen 355 IGLD 358 (411)
T ss_pred HCCC
Confidence 4333
No 499
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=23.42 E-value=1.4e+02 Score=16.22 Aligned_cols=32 Identities=13% Similarity=-0.080 Sum_probs=19.9
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 171 (331)
.+++|.++..-. ...+..+++..+++.++..|
T Consensus 4 ~FnyAw~Lv~S~-----~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 4 QFNYAWGLVKSN-----NREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHSS-----SHHHHHHHHHHHHHHCCCS-
T ss_pred hhHHHHHHhcCC-----CHHHHHHHHHHHHHHHhccC
Confidence 455666666443 33457788888888776544
No 500
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.76 E-value=3.3e+02 Score=20.25 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
++..+-..++..-+.+.|...|..+++..|++ .++..+-.
T Consensus 78 aLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~ 118 (139)
T PF12583_consen 78 ALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQ 118 (139)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 34444445556666778888888888888887 55544433
Done!