Query 020060
Match_columns 331
No_of_seqs 402 out of 2429
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 11:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abn_A Tetratricopeptide repea 100.0 9.1E-32 3.1E-36 244.5 31.4 319 6-331 44-387 (474)
2 2pl2_A Hypothetical conserved 100.0 3.4E-28 1.2E-32 198.2 21.3 205 62-279 3-212 (217)
3 3vtx_A MAMA; tetratricopeptide 99.9 5.7E-26 2E-30 179.9 18.5 172 62-253 3-175 (184)
4 4eqf_A PEX5-related protein; a 99.9 8.9E-26 3.1E-30 198.1 17.0 222 40-285 79-314 (365)
5 2h6f_A Protein farnesyltransfe 99.9 1.8E-25 6.2E-30 196.7 16.0 219 42-284 113-351 (382)
6 1w3b_A UDP-N-acetylglucosamine 99.9 5.3E-25 1.8E-29 194.8 18.5 199 63-281 168-368 (388)
7 2h6f_A Protein farnesyltransfe 99.9 2.6E-25 8.8E-30 195.7 16.1 199 59-277 92-301 (382)
8 3hym_B Cell division cycle pro 99.9 2.2E-24 7.4E-29 185.9 20.1 222 40-283 70-301 (330)
9 1fch_A Peroxisomal targeting s 99.9 8.8E-24 3E-28 185.2 24.1 234 40-285 39-318 (368)
10 4eqf_A PEX5-related protein; a 99.9 1.4E-24 4.7E-29 190.5 18.6 205 59-283 60-278 (365)
11 1w3b_A UDP-N-acetylglucosamine 99.9 9.9E-25 3.4E-29 193.1 17.5 195 67-281 104-300 (388)
12 3uq3_A Heat shock protein STI1 99.9 9.7E-24 3.3E-28 175.4 20.6 204 62-286 3-241 (258)
13 4i17_A Hypothetical protein; T 99.9 8E-24 2.7E-28 173.4 19.4 172 64-255 7-216 (228)
14 2pl2_A Hypothetical conserved 99.9 2.2E-24 7.6E-29 175.6 14.4 181 41-246 20-212 (217)
15 4gyw_A UDP-N-acetylglucosamine 99.9 2.9E-24 9.9E-29 202.9 16.9 173 59-251 4-177 (723)
16 2ho1_A Type 4 fimbrial biogene 99.9 3E-23 1E-27 172.4 21.1 204 59-282 32-239 (252)
17 2q7f_A YRRB protein; TPR, prot 99.9 6.2E-24 2.1E-28 175.2 16.1 204 60-283 19-224 (243)
18 3vtx_A MAMA; tetratricopeptide 99.9 2.4E-23 8.4E-28 164.7 18.7 170 97-285 3-174 (184)
19 3hym_B Cell division cycle pro 99.9 1.4E-23 4.7E-28 180.9 18.0 220 40-283 36-267 (330)
20 2vq2_A PILW, putative fimbrial 99.9 1E-22 3.6E-27 165.6 21.5 203 59-281 3-211 (225)
21 1fch_A Peroxisomal targeting s 99.9 5.7E-23 2E-27 180.0 20.8 220 40-283 78-361 (368)
22 3ieg_A DNAJ homolog subfamily 99.9 1.3E-22 4.5E-27 176.5 22.4 201 63-283 2-219 (359)
23 3ieg_A DNAJ homolog subfamily 99.9 7.2E-23 2.5E-27 178.2 20.5 217 42-282 19-264 (359)
24 3cv0_A Peroxisome targeting si 99.9 3.4E-23 1.1E-27 178.2 17.9 221 40-284 35-272 (327)
25 3qky_A Outer membrane assembly 99.9 1.9E-22 6.6E-27 168.7 21.7 200 61-272 12-252 (261)
26 4gyw_A UDP-N-acetylglucosamine 99.9 1.8E-23 6.3E-28 197.4 17.1 173 94-285 4-178 (723)
27 3u4t_A TPR repeat-containing p 99.9 1.2E-22 4.1E-27 170.6 17.7 198 65-282 4-209 (272)
28 3urz_A Uncharacterized protein 99.9 2.3E-22 8E-27 162.5 18.3 171 64-253 4-191 (208)
29 2y4t_A DNAJ homolog subfamily 99.9 1.3E-22 4.6E-27 182.6 18.7 218 42-283 42-288 (450)
30 2q7f_A YRRB protein; TPR, prot 99.9 8.5E-23 2.9E-27 168.3 15.8 200 40-263 37-238 (243)
31 1xnf_A Lipoprotein NLPI; TPR, 99.9 5.7E-21 1.9E-25 160.3 26.4 213 40-275 19-269 (275)
32 3u4t_A TPR repeat-containing p 99.9 4.4E-23 1.5E-27 173.2 13.0 202 62-284 35-253 (272)
33 2y4t_A DNAJ homolog subfamily 99.9 4.5E-22 1.5E-26 179.2 20.0 204 59-282 21-241 (450)
34 2xpi_A Anaphase-promoting comp 99.9 3.3E-22 1.1E-26 186.5 19.6 204 62-283 371-581 (597)
35 3fp2_A TPR repeat-containing p 99.9 5E-22 1.7E-26 182.8 19.9 218 42-284 259-494 (537)
36 3cv0_A Peroxisome targeting si 99.9 8.1E-22 2.8E-26 169.5 19.8 205 59-283 16-237 (327)
37 3uq3_A Heat shock protein STI1 99.9 2E-22 6.8E-27 167.4 14.8 173 63-255 37-249 (258)
38 2xpi_A Anaphase-promoting comp 99.9 5.3E-21 1.8E-25 178.4 24.5 221 38-283 284-506 (597)
39 2gw1_A Mitochondrial precursor 99.9 4.9E-22 1.7E-26 181.6 15.8 219 41-284 252-481 (514)
40 3as5_A MAMA; tetratricopeptide 99.9 2.2E-21 7.5E-26 152.7 17.3 175 60-254 4-179 (186)
41 4i17_A Hypothetical protein; T 99.9 3.7E-21 1.3E-25 157.5 19.0 154 96-268 4-169 (228)
42 3mkr_A Coatomer subunit epsilo 99.9 1.3E-20 4.4E-25 160.2 21.4 213 41-283 49-266 (291)
43 3mkr_A Coatomer subunit epsilo 99.9 9.9E-21 3.4E-25 160.9 20.4 207 41-275 80-288 (291)
44 2gw1_A Mitochondrial precursor 99.9 1.8E-21 6.3E-26 177.8 15.9 202 61-283 234-446 (514)
45 4g1t_A Interferon-induced prot 99.9 1.5E-20 5.1E-25 170.4 21.4 209 60-283 47-278 (472)
46 3fp2_A TPR repeat-containing p 99.9 3.2E-21 1.1E-25 177.4 17.0 223 40-283 216-459 (537)
47 2ho1_A Type 4 fimbrial biogene 99.9 1.3E-20 4.5E-25 156.3 18.5 174 62-255 69-245 (252)
48 4ga2_A E3 SUMO-protein ligase 99.9 6.5E-22 2.2E-26 151.3 9.3 146 69-234 2-149 (150)
49 2pzi_A Probable serine/threoni 99.9 2.1E-21 7.2E-26 183.8 14.8 180 64-267 394-583 (681)
50 4abn_A Tetratricopeptide repea 99.9 1.4E-20 4.8E-25 170.9 19.1 194 78-283 82-289 (474)
51 2vq2_A PILW, putative fimbrial 99.9 4.2E-20 1.4E-24 150.1 19.4 174 62-255 40-218 (225)
52 4g1t_A Interferon-induced prot 99.9 3.2E-20 1.1E-24 168.2 19.7 223 40-281 115-363 (472)
53 2ond_A Cleavage stimulation fa 99.9 6E-20 2.1E-24 157.5 20.2 204 61-283 47-272 (308)
54 2yhc_A BAMD, UPF0169 lipoprote 99.9 1.3E-19 4.4E-24 148.2 21.2 178 64-253 4-218 (225)
55 1qqe_A Vesicular transport pro 99.8 7.6E-21 2.6E-25 161.8 13.7 202 64-285 37-273 (292)
56 3nf1_A KLC 1, kinesin light ch 99.8 1.6E-20 5.4E-25 160.3 15.3 207 59-283 22-309 (311)
57 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.9E-20 1.7E-24 154.6 15.2 164 68-252 9-177 (275)
58 1ouv_A Conserved hypothetical 99.8 5.8E-19 2E-23 148.4 21.6 189 65-282 39-252 (273)
59 4ga2_A E3 SUMO-protein ligase 99.8 2.6E-21 8.8E-26 148.0 6.3 142 104-264 2-146 (150)
60 1ouv_A Conserved hypothetical 99.8 3.7E-19 1.2E-23 149.6 19.2 193 62-283 4-217 (273)
61 3urz_A Uncharacterized protein 99.8 1.2E-19 4.1E-24 146.5 14.4 168 98-284 3-189 (208)
62 3qky_A Outer membrane assembly 99.8 7.6E-19 2.6E-23 146.8 19.7 173 92-283 8-226 (261)
63 3sf4_A G-protein-signaling mod 99.8 3.6E-20 1.2E-24 164.0 12.0 214 59-284 42-299 (406)
64 4a1s_A PINS, partner of inscut 99.8 2.4E-20 8.4E-25 165.9 10.3 215 59-285 81-336 (411)
65 3ulq_A Response regulator aspa 99.8 1.6E-19 5.6E-24 159.4 14.9 221 41-285 125-372 (383)
66 2ond_A Cleavage stimulation fa 99.8 1.2E-18 4.2E-23 149.3 19.8 181 82-281 33-232 (308)
67 2r5s_A Uncharacterized protein 99.8 6.6E-20 2.3E-24 144.0 10.4 164 64-247 6-172 (176)
68 3as5_A MAMA; tetratricopeptide 99.8 9.3E-19 3.2E-23 137.5 17.0 167 98-283 7-175 (186)
69 3sf4_A G-protein-signaling mod 99.8 2.8E-19 9.5E-24 158.3 15.4 221 40-285 68-340 (406)
70 3ro2_A PINS homolog, G-protein 99.8 7.1E-20 2.4E-24 157.5 10.6 218 59-286 38-297 (338)
71 3edt_B KLC 2, kinesin light ch 99.8 3.4E-19 1.2E-23 149.6 14.3 224 36-280 18-280 (283)
72 4gco_A Protein STI-1; structur 99.8 3.2E-19 1.1E-23 132.0 12.1 117 93-228 7-124 (126)
73 4a1s_A PINS, partner of inscut 99.8 3E-19 1E-23 158.8 14.2 206 61-284 45-295 (411)
74 2pzi_A Probable serine/threoni 99.8 3.8E-19 1.3E-23 168.4 14.6 155 59-234 428-583 (681)
75 4gco_A Protein STI-1; structur 99.8 9.6E-19 3.3E-23 129.4 13.2 116 60-184 9-125 (126)
76 3ro2_A PINS homolog, G-protein 99.8 1.6E-18 5.6E-23 148.9 16.1 204 63-284 4-255 (338)
77 3qou_A Protein YBBN; thioredox 99.8 1.3E-18 4.5E-23 147.5 15.0 165 96-279 114-282 (287)
78 2vsy_A XCC0866; transferase, g 99.8 1.9E-18 6.5E-23 160.5 16.8 159 77-255 2-164 (568)
79 3dra_A Protein farnesyltransfe 99.8 2E-18 6.9E-23 146.3 14.8 204 61-284 64-291 (306)
80 3edt_B KLC 2, kinesin light ch 99.8 7.7E-19 2.6E-23 147.5 11.3 156 76-249 13-199 (283)
81 3q15_A PSP28, response regulat 99.8 3.4E-18 1.2E-22 150.7 15.7 224 40-287 122-371 (378)
82 3gyz_A Chaperone protein IPGC; 99.8 6.1E-19 2.1E-23 134.4 9.3 115 120-253 23-138 (151)
83 1qqe_A Vesicular transport pro 99.8 3.2E-18 1.1E-22 145.6 14.4 189 41-254 59-275 (292)
84 2yhc_A BAMD, UPF0169 lipoprote 99.8 2.8E-17 9.7E-22 134.2 19.5 172 98-279 3-211 (225)
85 3ulq_A Response regulator aspa 99.8 1.8E-18 6.2E-23 152.7 12.9 196 65-278 104-332 (383)
86 3nf1_A KLC 1, kinesin light ch 99.8 3.7E-18 1.3E-22 145.5 13.6 174 60-251 65-310 (311)
87 3qou_A Protein YBBN; thioredox 99.8 1.2E-17 4E-22 141.7 16.4 167 61-247 114-283 (287)
88 2r5s_A Uncharacterized protein 99.8 3.2E-18 1.1E-22 134.3 10.2 166 96-280 3-172 (176)
89 2ooe_A Cleavage stimulation fa 99.8 8.1E-17 2.8E-21 148.3 20.9 202 62-283 270-494 (530)
90 3gyz_A Chaperone protein IPGC; 99.8 1.2E-18 4.1E-23 132.8 7.1 115 86-219 23-138 (151)
91 2c2l_A CHIP, carboxy terminus 99.8 2.3E-17 7.9E-22 139.4 15.6 193 63-280 3-198 (281)
92 1p5q_A FKBP52, FK506-binding p 99.7 1.9E-18 6.6E-23 149.8 7.9 179 38-238 77-283 (336)
93 3q15_A PSP28, response regulat 99.7 2.5E-17 8.4E-22 145.2 15.0 169 63-251 100-293 (378)
94 3dss_A Geranylgeranyl transfer 99.7 2.9E-16 1E-20 133.9 20.8 227 44-284 48-307 (331)
95 3dra_A Protein farnesyltransfe 99.7 1.2E-16 4.2E-21 135.4 18.1 186 71-272 39-240 (306)
96 2ifu_A Gamma-SNAP; membrane fu 99.7 4.6E-17 1.6E-21 139.4 15.4 174 59-254 31-229 (307)
97 1p5q_A FKBP52, FK506-binding p 99.7 5.6E-19 1.9E-23 153.2 3.3 187 71-279 72-292 (336)
98 2vgx_A Chaperone SYCD; alterna 99.7 1.3E-17 4.4E-22 127.0 10.3 113 122-253 10-123 (148)
99 2vgx_A Chaperone SYCD; alterna 99.7 2.9E-17 9.9E-22 125.0 11.1 122 85-225 7-129 (148)
100 3dss_A Geranylgeranyl transfer 99.7 7.9E-16 2.7E-20 131.2 20.8 191 76-283 41-269 (331)
101 2fo7_A Synthetic consensus TPR 99.7 4.9E-16 1.7E-20 115.0 16.0 133 100-251 2-135 (136)
102 2xcb_A PCRH, regulatory protei 99.7 1E-16 3.4E-21 121.1 12.3 117 87-222 6-123 (142)
103 4f3v_A ESX-1 secretion system 99.7 2.5E-17 8.5E-22 136.7 9.0 214 63-298 6-253 (282)
104 2xcb_A PCRH, regulatory protei 99.7 9.6E-17 3.3E-21 121.2 11.1 131 119-268 4-136 (142)
105 2vsy_A XCC0866; transferase, g 99.7 1.8E-16 6.1E-21 147.2 14.6 153 112-283 2-159 (568)
106 1dce_A Protein (RAB geranylger 99.7 1.3E-15 4.6E-20 140.5 19.9 180 74-270 38-244 (567)
107 2ooe_A Cleavage stimulation fa 99.7 1.6E-15 5.6E-20 139.6 19.5 181 82-281 255-454 (530)
108 3rjv_A Putative SEL1 repeat pr 99.7 4.4E-16 1.5E-20 125.9 13.8 170 62-249 16-198 (212)
109 2fo7_A Synthetic consensus TPR 99.7 1.8E-15 6.3E-20 111.9 15.3 131 65-213 2-133 (136)
110 3rjv_A Putative SEL1 repeat pr 99.7 1.3E-15 4.6E-20 123.0 15.5 179 82-282 3-198 (212)
111 1hh8_A P67PHOX, NCF-2, neutrop 99.7 1.5E-15 5E-20 122.5 15.6 147 66-253 8-155 (213)
112 3q7a_A Farnesyltransferase alp 99.7 7.6E-15 2.6E-19 125.7 20.6 188 61-267 51-257 (349)
113 2qfc_A PLCR protein; TPR, HTH, 99.7 4.8E-15 1.6E-19 125.9 19.1 170 63-250 74-268 (293)
114 1a17_A Serine/threonine protei 99.7 3.8E-15 1.3E-19 114.8 16.5 133 61-211 10-145 (166)
115 3upv_A Heat shock protein STI1 99.7 1.1E-15 3.8E-20 112.6 12.8 116 62-186 2-124 (126)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.7 4.2E-15 1.4E-19 119.8 17.1 154 39-248 19-172 (213)
117 1a17_A Serine/threonine protei 99.7 6E-15 2.1E-19 113.7 16.4 130 99-247 13-145 (166)
118 3u3w_A Transcriptional activat 99.7 4.4E-15 1.5E-19 126.1 16.9 168 64-249 75-267 (293)
119 2e2e_A Formate-dependent nitri 99.7 9.7E-16 3.3E-20 120.0 11.7 131 71-221 17-151 (177)
120 2xm6_A Protein corresponding t 99.7 1E-14 3.5E-19 133.0 20.1 196 66-282 221-433 (490)
121 3sz7_A HSC70 cochaperone (SGT) 99.6 2.6E-15 8.9E-20 116.1 13.9 119 59-186 6-125 (164)
122 2xm6_A Protein corresponding t 99.6 2.4E-14 8.2E-19 130.5 21.9 193 64-280 183-395 (490)
123 2e2e_A Formate-dependent nitri 99.6 2.9E-15 9.8E-20 117.3 13.4 128 109-255 20-151 (177)
124 3upv_A Heat shock protein STI1 99.6 3.6E-15 1.2E-19 109.9 12.9 97 98-211 3-100 (126)
125 1dce_A Protein (RAB geranylger 99.6 4.1E-16 1.4E-20 143.9 9.3 182 61-252 60-271 (567)
126 1hz4_A MALT regulatory protein 99.6 1.9E-14 6.7E-19 126.2 19.5 205 61-283 50-284 (373)
127 3gw4_A Uncharacterized protein 99.6 6.1E-15 2.1E-19 117.7 14.6 175 75-267 3-195 (203)
128 4gcn_A Protein STI-1; structur 99.6 3.3E-15 1.1E-19 110.4 11.6 108 61-178 5-120 (127)
129 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 3.5E-16 1.2E-20 141.2 7.6 159 76-272 246-405 (457)
130 2fbn_A 70 kDa peptidylprolyl i 99.6 1E-15 3.6E-20 122.2 9.4 167 69-272 9-176 (198)
131 3sz7_A HSC70 cochaperone (SGT) 99.6 6.4E-15 2.2E-19 113.9 13.5 103 133-254 12-114 (164)
132 3q7a_A Farnesyltransferase alp 99.6 4.5E-15 1.5E-19 127.1 13.7 213 61-278 85-328 (349)
133 2fbn_A 70 kDa peptidylprolyl i 99.6 7.8E-16 2.7E-20 122.9 8.1 150 61-247 35-185 (198)
134 2lni_A Stress-induced-phosphop 99.6 9.4E-15 3.2E-19 108.1 13.5 120 59-187 11-131 (133)
135 2c2l_A CHIP, carboxy terminus 99.6 1.8E-14 6.2E-19 121.6 16.9 162 96-281 1-164 (281)
136 2lni_A Stress-induced-phosphop 99.6 8.8E-15 3E-19 108.3 13.1 121 95-234 12-133 (133)
137 2vyi_A SGTA protein; chaperone 99.6 1.3E-14 4.3E-19 106.9 12.9 120 59-187 7-127 (131)
138 2ifu_A Gamma-SNAP; membrane fu 99.6 2.4E-15 8.1E-20 128.7 10.0 160 105-283 42-225 (307)
139 1hxi_A PEX5, peroxisome target 99.6 1.1E-14 3.7E-19 106.6 12.1 104 63-175 16-120 (121)
140 2hr2_A Hypothetical protein; a 99.6 3.6E-15 1.2E-19 112.5 9.2 114 62-184 9-146 (159)
141 2vyi_A SGTA protein; chaperone 99.6 9.4E-15 3.2E-19 107.6 11.5 122 95-235 8-130 (131)
142 1hz4_A MALT regulatory protein 99.6 1.6E-13 5.5E-18 120.3 21.2 205 61-285 90-326 (373)
143 2qfc_A PLCR protein; TPR, HTH, 99.6 2.6E-14 8.9E-19 121.3 15.6 175 95-286 71-271 (293)
144 3e4b_A ALGK; tetratricopeptide 99.6 4.1E-14 1.4E-18 127.6 17.2 191 66-279 178-385 (452)
145 3e4b_A ALGK; tetratricopeptide 99.6 4.5E-14 1.5E-18 127.3 17.3 193 64-280 141-350 (452)
146 3q49_B STIP1 homology and U bo 99.6 4.6E-14 1.6E-18 105.2 14.0 99 96-211 6-105 (137)
147 4gcn_A Protein STI-1; structur 99.6 1.9E-14 6.4E-19 106.3 11.5 101 133-252 9-116 (127)
148 3rkv_A Putative peptidylprolyl 99.6 1.7E-14 5.9E-19 111.2 11.7 118 61-187 8-145 (162)
149 1wao_1 Serine/threonine protei 99.6 2.1E-15 7.1E-20 136.8 7.4 128 62-207 4-134 (477)
150 1elw_A TPR1-domain of HOP; HOP 99.6 8.8E-14 3E-18 100.3 14.5 113 63-184 3-116 (118)
151 4f3v_A ESX-1 secretion system 99.6 2.4E-15 8.1E-20 124.8 6.4 189 43-254 23-242 (282)
152 1hxi_A PEX5, peroxisome target 99.6 2.9E-14 9.9E-19 104.3 11.4 102 133-253 18-119 (121)
153 2hr2_A Hypothetical protein; a 99.6 2.3E-14 7.8E-19 108.1 11.0 114 98-230 10-147 (159)
154 3q49_B STIP1 homology and U bo 99.6 4.6E-14 1.6E-18 105.3 12.7 117 61-186 6-128 (137)
155 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 5.8E-14 2E-18 126.7 15.8 127 61-205 265-407 (457)
156 1na0_A Designed protein CTPR3; 99.6 1.3E-13 4.5E-18 100.4 14.6 113 64-185 9-122 (125)
157 1na0_A Designed protein CTPR3; 99.6 1.3E-13 4.3E-18 100.5 14.0 101 40-145 23-124 (125)
158 3u3w_A Transcriptional activat 99.6 1E-13 3.5E-18 117.7 15.5 170 101-287 77-272 (293)
159 3rkv_A Putative peptidylprolyl 99.5 5E-14 1.7E-18 108.6 12.0 140 98-271 10-151 (162)
160 3mv2_B Coatomer subunit epsilo 99.5 4.3E-13 1.5E-17 112.7 17.6 188 64-275 100-306 (310)
161 1wao_1 Serine/threonine protei 99.5 2.5E-15 8.4E-20 136.3 4.0 138 98-254 5-156 (477)
162 1zu2_A Mitochondrial import re 99.5 1E-13 3.5E-18 104.3 12.0 92 152-254 14-126 (158)
163 2if4_A ATFKBP42; FKBP-like, al 99.5 3.5E-14 1.2E-18 123.0 10.1 139 62-219 177-333 (338)
164 1elw_A TPR1-domain of HOP; HOP 99.5 3.6E-13 1.2E-17 97.1 13.9 111 99-228 4-115 (118)
165 1xi4_A Clathrin heavy chain; a 99.5 7.6E-13 2.6E-17 129.0 19.3 206 40-285 1090-1349(1630)
166 2if4_A ATFKBP42; FKBP-like, al 99.5 1.2E-14 4.2E-19 125.9 6.3 151 95-280 175-327 (338)
167 2dba_A Smooth muscle cell asso 99.5 4.3E-13 1.5E-17 101.1 13.9 117 60-185 24-144 (148)
168 1zu2_A Mitochondrial import re 99.5 1.3E-13 4.6E-18 103.7 10.2 104 76-180 14-131 (158)
169 1ihg_A Cyclophilin 40; ppiase 99.5 3.9E-13 1.3E-17 117.8 13.4 125 62-204 221-362 (370)
170 2dba_A Smooth muscle cell asso 99.5 8.7E-13 3E-17 99.3 13.6 117 94-229 23-143 (148)
171 1ihg_A Cyclophilin 40; ppiase 99.5 8.2E-13 2.8E-17 115.7 14.5 140 99-274 223-363 (370)
172 1elr_A TPR2A-domain of HOP; HO 99.5 6E-13 2E-17 97.8 11.4 117 98-234 3-127 (131)
173 2kck_A TPR repeat; tetratricop 99.5 4.6E-13 1.6E-17 95.6 10.3 106 129-253 2-111 (112)
174 3ro3_A PINS homolog, G-protein 99.5 9.3E-13 3.2E-17 100.4 12.4 135 101-252 11-162 (164)
175 2xev_A YBGF; tetratricopeptide 99.5 1.1E-12 3.7E-17 96.6 12.2 110 66-184 4-120 (129)
176 3gw4_A Uncharacterized protein 99.4 8.6E-13 2.9E-17 105.1 12.4 137 59-213 21-177 (203)
177 2kck_A TPR repeat; tetratricop 99.4 4.6E-13 1.6E-17 95.6 9.8 104 62-174 4-111 (112)
178 2xev_A YBGF; tetratricopeptide 99.4 1.6E-12 5.6E-17 95.6 13.0 103 134-255 4-112 (129)
179 1elr_A TPR2A-domain of HOP; HO 99.4 2.2E-12 7.7E-17 94.7 12.7 115 133-267 5-127 (131)
180 3k9i_A BH0479 protein; putativ 99.4 1.9E-13 6.6E-18 99.2 6.7 91 154-255 4-97 (117)
181 3k9i_A BH0479 protein; putativ 99.4 1.5E-13 5.2E-18 99.8 5.3 94 76-178 2-99 (117)
182 3ro3_A PINS homolog, G-protein 99.4 1E-12 3.5E-17 100.2 9.8 136 59-212 4-158 (164)
183 4b4t_Q 26S proteasome regulato 99.4 1.6E-12 5.6E-17 116.1 12.0 200 66-283 6-247 (434)
184 1b89_A Protein (clathrin heavy 99.4 5.8E-13 2E-17 116.8 7.7 156 100-290 123-281 (449)
185 1b89_A Protein (clathrin heavy 99.3 2.7E-13 9.2E-18 118.9 2.6 184 65-281 33-236 (449)
186 2kat_A Uncharacterized protein 99.3 1.2E-11 4.2E-16 89.2 10.2 99 158-267 3-104 (115)
187 3mv2_B Coatomer subunit epsilo 99.3 1.7E-11 6E-16 103.0 11.8 164 84-267 85-270 (310)
188 1xi4_A Clathrin heavy chain; a 99.3 1.6E-10 5.6E-15 113.0 19.2 150 97-283 1103-1252(1630)
189 1na3_A Designed protein CTPR2; 99.3 3.5E-11 1.2E-15 82.5 10.6 87 59-146 4-91 (91)
190 2kat_A Uncharacterized protein 99.2 1.5E-10 5E-15 83.4 12.1 84 83-174 3-87 (115)
191 4e6h_A MRNA 3'-END-processing 99.2 1.1E-09 3.9E-14 102.5 19.2 200 62-280 341-569 (679)
192 2l6j_A TPR repeat-containing p 99.2 1.3E-11 4.6E-16 88.0 4.9 68 64-132 4-71 (111)
193 2l6j_A TPR repeat-containing p 99.2 2.6E-11 9E-16 86.5 6.3 92 173-275 3-94 (111)
194 4b4t_Q 26S proteasome regulato 99.2 2E-10 6.9E-15 102.4 12.9 168 63-248 54-245 (434)
195 3ma5_A Tetratricopeptide repea 99.2 7.5E-11 2.6E-15 82.8 7.7 75 169-254 2-76 (100)
196 3ma5_A Tetratricopeptide repea 99.1 1.6E-10 5.5E-15 81.1 7.9 83 61-144 4-89 (100)
197 1na3_A Designed protein CTPR2; 99.1 2.7E-10 9.4E-15 77.9 8.9 83 172-265 7-90 (91)
198 2kc7_A BFR218_protein; tetratr 99.1 1.8E-10 6.1E-15 80.5 6.7 90 68-174 4-95 (99)
199 4e6h_A MRNA 3'-END-processing 99.1 4.4E-09 1.5E-13 98.6 18.0 181 82-280 326-532 (679)
200 1klx_A Cysteine rich protein B 99.1 2.2E-09 7.7E-14 80.0 12.4 129 78-227 9-137 (138)
201 1klx_A Cysteine rich protein B 99.0 2.1E-09 7.2E-14 80.1 11.4 116 113-250 9-128 (138)
202 3ly7_A Transcriptional activat 99.0 1.4E-08 4.8E-13 86.9 16.7 126 116-254 216-345 (372)
203 2kc7_A BFR218_protein; tetratr 99.0 4.3E-09 1.5E-13 73.3 10.7 89 177-283 3-92 (99)
204 3ly7_A Transcriptional activat 99.0 1.3E-08 4.3E-13 87.2 15.0 157 125-287 186-345 (372)
205 3n71_A Histone lysine methyltr 98.9 6.9E-09 2.3E-13 93.7 12.5 125 69-211 314-463 (490)
206 3n71_A Histone lysine methyltr 98.9 1.7E-08 5.9E-13 91.1 14.9 128 104-248 314-464 (490)
207 1pc2_A Mitochondria fission pr 98.9 2.5E-08 8.5E-13 74.2 12.1 96 154-256 12-108 (152)
208 3bee_A Putative YFRE protein; 98.8 4.4E-08 1.5E-12 67.3 8.7 71 61-132 3-76 (93)
209 3bee_A Putative YFRE protein; 98.8 9.2E-08 3.2E-12 65.7 10.3 78 170-255 2-79 (93)
210 3u64_A Protein TP_0956; tetrat 98.8 5.4E-07 1.9E-11 74.1 16.5 95 152-252 175-273 (301)
211 2v5f_A Prolyl 4-hydroxylase su 98.6 3.3E-07 1.1E-11 64.4 10.0 75 64-139 5-87 (104)
212 2v5f_A Prolyl 4-hydroxylase su 98.6 2.7E-07 9.3E-12 64.9 9.2 78 173-259 4-87 (104)
213 1pc2_A Mitochondria fission pr 98.6 5.6E-07 1.9E-11 66.9 10.2 92 82-181 15-112 (152)
214 3qww_A SET and MYND domain-con 98.5 2E-07 6.8E-12 82.8 7.2 92 155-255 313-423 (433)
215 2uy1_A Cleavage stimulation fa 98.5 2.3E-05 7.8E-10 71.1 20.7 151 82-245 196-380 (493)
216 3qwp_A SET and MYND domain-con 98.5 7.9E-07 2.7E-11 79.0 10.7 93 154-255 301-412 (429)
217 3u64_A Protein TP_0956; tetrat 98.5 5.1E-06 1.7E-10 68.4 14.0 191 82-283 49-271 (301)
218 3qww_A SET and MYND domain-con 98.4 2E-06 6.7E-11 76.4 10.7 90 36-129 315-412 (433)
219 3qwp_A SET and MYND domain-con 98.4 5.9E-06 2E-10 73.4 13.3 102 39-144 307-425 (429)
220 2uy1_A Cleavage stimulation fa 98.3 0.00034 1.2E-08 63.4 23.6 145 116-272 196-374 (493)
221 1nzn_A CGI-135 protein, fissio 98.3 8.4E-06 2.9E-10 58.3 10.1 98 155-259 16-114 (126)
222 2xvs_A Tetratricopeptide repea 98.2 4.8E-06 1.6E-10 61.9 7.2 75 257-331 5-95 (166)
223 1nzn_A CGI-135 protein, fissio 97.9 0.00011 3.7E-09 52.5 10.0 92 82-181 18-115 (126)
224 4g26_A Pentatricopeptide repea 97.9 0.0019 6.4E-08 58.6 20.6 161 68-248 30-204 (501)
225 4g26_A Pentatricopeptide repea 97.9 0.00062 2.1E-08 61.7 16.4 169 101-279 28-202 (501)
226 3o48_A Mitochondria fission 1 97.8 0.00059 2E-08 48.9 12.2 80 172-259 38-118 (134)
227 1y8m_A FIS1; mitochondria, unk 97.7 0.00086 3E-08 48.7 12.2 81 171-259 36-117 (144)
228 4h7y_A Dual specificity protei 97.6 0.00074 2.5E-08 49.5 9.6 108 93-220 7-129 (161)
229 3o48_A Mitochondria fission 1 97.2 0.0065 2.2E-07 43.5 10.9 77 65-141 41-121 (134)
230 4h7y_A Dual specificity protei 97.2 0.0059 2E-07 44.7 10.7 113 128-254 8-129 (161)
231 3ffl_A Anaphase-promoting comp 97.1 0.0028 9.4E-08 47.4 8.5 82 155-245 35-148 (167)
232 1y8m_A FIS1; mitochondria, unk 97.0 0.017 5.9E-07 41.9 11.9 72 64-135 39-114 (144)
233 3ffl_A Anaphase-promoting comp 97.0 0.0059 2E-07 45.6 9.1 109 101-229 22-165 (167)
234 3txn_A 26S proteasome regulato 96.5 0.033 1.1E-06 48.4 11.9 163 100-278 20-207 (394)
235 4gns_B Protein CSD3, chitin bi 96.2 0.02 6.9E-07 54.0 9.6 116 112-245 261-397 (754)
236 1ya0_A SMG-7 transcript varian 95.4 0.067 2.3E-06 48.1 9.2 77 66-143 154-231 (497)
237 1ya0_A SMG-7 transcript varian 95.4 0.087 3E-06 47.3 9.8 78 176-264 154-232 (497)
238 4gns_B Protein CSD3, chitin bi 95.4 0.092 3.1E-06 49.6 10.3 116 76-209 260-397 (754)
239 3mkq_B Coatomer subunit alpha; 95.3 0.18 6E-06 38.3 9.9 43 154-210 19-61 (177)
240 1zbp_A Hypothetical protein VP 95.2 0.16 5.5E-06 41.2 9.8 59 73-132 6-64 (273)
241 3mkq_B Coatomer subunit alpha; 94.5 1.1 3.9E-05 33.9 12.6 100 75-209 16-115 (177)
242 3kae_A CDC27, possible protein 94.5 1.1 3.8E-05 33.6 12.7 39 216-254 110-149 (242)
243 3kae_A CDC27, possible protein 94.4 1.2 4E-05 33.4 15.8 171 65-252 34-241 (242)
244 3mkq_A Coatomer beta'-subunit; 94.0 0.75 2.6E-05 43.8 13.3 110 103-244 633-748 (814)
245 4b4t_R RPN7, 26S proteasome re 94.0 0.54 1.8E-05 41.5 11.2 100 62-170 129-238 (429)
246 3txn_A 26S proteasome regulato 93.9 2.9 0.0001 36.2 17.0 171 63-251 18-213 (394)
247 4b4t_R RPN7, 26S proteasome re 93.3 0.23 8E-06 43.8 7.7 86 155-249 112-198 (429)
248 2ff4_A Probable regulatory pro 93.0 1.4 4.7E-05 38.2 12.1 85 110-211 126-233 (388)
249 3mkq_A Coatomer beta'-subunit; 93.0 0.91 3.1E-05 43.2 11.9 46 109-166 662-707 (814)
250 2ff4_A Probable regulatory pro 91.9 0.52 1.8E-05 40.9 8.0 56 69-125 176-231 (388)
251 4b4t_S RPN3, 26S proteasome re 91.5 0.12 4E-06 46.3 3.3 29 222-250 273-301 (523)
252 1zbp_A Hypothetical protein VP 89.7 2.2 7.6E-05 34.6 9.0 57 197-255 11-67 (273)
253 4fhn_B Nucleoporin NUP120; pro 89.5 3.5 0.00012 41.3 12.3 100 92-208 835-963 (1139)
254 4b4t_P 26S proteasome regulato 89.2 9.1 0.00031 33.8 13.6 100 61-169 134-247 (445)
255 4b4t_S RPN3, 26S proteasome re 87.9 10 0.00035 34.0 12.8 71 59-132 226-303 (523)
256 3spa_A Mtrpol, DNA-directed RN 87.7 7.4 0.00025 38.2 12.4 98 64-169 127-230 (1134)
257 3spa_A Mtrpol, DNA-directed RN 86.8 9.5 0.00033 37.5 12.6 98 134-249 129-231 (1134)
258 4fhn_B Nucleoporin NUP120; pro 84.7 17 0.00057 36.5 14.0 92 66-166 844-964 (1139)
259 2wpv_A GET4, UPF0363 protein Y 84.4 17 0.00057 30.3 13.2 105 134-247 94-216 (312)
260 4b4t_P 26S proteasome regulato 84.4 21 0.00071 31.4 17.5 190 78-280 30-246 (445)
261 1qsa_A Protein (soluble lytic 79.9 38 0.0013 31.3 17.1 118 41-168 229-347 (618)
262 3esl_A Checkpoint serine/threo 79.6 16 0.00055 28.1 9.1 73 170-252 76-148 (202)
263 3t5x_A PCI domain-containing p 75.9 4.6 0.00016 31.3 5.3 37 61-98 11-47 (203)
264 2ijq_A Hypothetical protein; s 73.9 16 0.00056 27.0 7.5 61 67-128 35-104 (161)
265 1qsa_A Protein (soluble lytic 70.7 66 0.0023 29.7 18.1 93 199-294 268-361 (618)
266 3ax2_A Mitochondrial import re 69.6 11 0.00037 23.7 4.9 32 223-254 21-52 (73)
267 2wpv_A GET4, UPF0363 protein Y 68.3 51 0.0017 27.4 12.5 28 216-243 131-158 (312)
268 4a1g_A Mitotic checkpoint seri 67.2 34 0.0012 25.0 10.6 53 201-253 83-135 (152)
269 2w2u_A Hypothetical P60 katani 66.7 23 0.00078 22.8 6.7 55 197-268 14-76 (83)
270 3ax2_A Mitochondrial import re 66.0 10 0.00036 23.8 4.2 30 103-132 21-50 (73)
271 2v6y_A AAA family ATPase, P60 64.9 25 0.00085 22.6 6.7 15 199-213 8-22 (83)
272 3lpz_A GET4 (YOR164C homolog); 63.9 65 0.0022 27.1 13.0 27 216-242 133-159 (336)
273 3lpz_A GET4 (YOR164C homolog); 60.2 76 0.0026 26.6 15.3 83 155-246 117-214 (336)
274 4gq2_M Nucleoporin NUP120; bet 60.1 95 0.0033 30.4 12.0 51 105-167 816-867 (950)
275 2crb_A Nuclear receptor bindin 58.3 18 0.00063 23.7 4.4 26 101-126 17-42 (97)
276 1wy6_A Hypothetical protein ST 57.5 40 0.0014 24.4 6.4 51 197-249 105-155 (172)
277 3t5x_A PCI domain-containing p 55.0 38 0.0013 26.1 6.7 34 99-132 14-47 (203)
278 1wy6_A Hypothetical protein ST 54.0 56 0.0019 23.6 6.7 48 82-129 108-155 (172)
279 4gq2_M Nucleoporin NUP120; bet 52.2 45 0.0015 32.7 8.2 79 163-250 829-928 (950)
280 2rpa_A Katanin P60 ATPase-cont 52.0 19 0.00064 22.9 3.7 27 102-128 15-41 (78)
281 2crb_A Nuclear receptor bindin 51.9 15 0.00053 24.1 3.3 33 59-92 10-42 (97)
282 3t5v_B Nuclear mRNA export pro 51.6 26 0.00089 30.9 5.9 37 61-98 217-254 (455)
283 1om2_A Protein (mitochondrial 51.4 36 0.0012 22.6 5.1 31 223-253 24-54 (95)
284 4ady_A RPN2, 26S proteasome re 51.4 1.8E+02 0.0063 28.4 12.9 82 44-129 392-484 (963)
285 2wvi_A Mitotic checkpoint seri 50.8 73 0.0025 23.6 10.8 53 201-253 78-130 (164)
286 1wfd_A Hypothetical protein 15 50.0 52 0.0018 21.6 7.3 17 197-213 10-26 (93)
287 2ynq_A ESSB; membrane protein, 49.7 57 0.002 24.0 6.4 79 39-125 21-99 (161)
288 1om2_A Protein (mitochondrial 49.6 27 0.00091 23.2 4.3 30 103-132 24-53 (95)
289 2dl1_A Spartin; SPG20, MIT, st 49.4 31 0.0011 23.8 4.7 45 197-251 17-61 (116)
290 4aez_C MAD3, mitotic spindle c 48.9 90 0.0031 24.4 7.9 52 201-252 132-183 (223)
291 2cwy_A Hypothetical protein TT 47.8 45 0.0015 22.0 5.3 56 69-127 6-67 (94)
292 3lew_A SUSD-like carbohydrate 45.0 43 0.0015 29.9 6.4 56 38-94 177-232 (495)
293 2w2u_A Hypothetical P60 katani 44.2 39 0.0013 21.7 4.4 17 110-126 30-46 (83)
294 2rpa_A Katanin P60 ATPase-cont 43.7 22 0.00075 22.6 3.1 27 222-248 15-41 (78)
295 3esl_A Checkpoint serine/threo 43.3 1.1E+02 0.0038 23.5 10.6 88 40-131 58-147 (202)
296 2v6y_A AAA family ATPase, P60 40.5 48 0.0016 21.2 4.4 17 110-126 22-38 (83)
297 3re2_A Predicted protein; meni 40.4 62 0.0021 27.5 6.0 48 202-249 276-326 (472)
298 4ady_A RPN2, 26S proteasome re 40.4 2.7E+02 0.0094 27.2 11.8 62 64-127 455-518 (963)
299 2ynq_A ESSB; membrane protein, 40.2 46 0.0016 24.5 4.6 80 106-209 15-99 (161)
300 3myv_A SUSD superfamily protei 38.9 53 0.0018 28.8 6.0 52 38-93 167-218 (454)
301 3t5v_B Nuclear mRNA export pro 38.7 33 0.0011 30.3 4.5 61 70-131 182-253 (455)
302 3ubw_A 14-3-3E, 14-3-3 protein 37.3 1.6E+02 0.0055 23.6 16.1 179 66-247 33-227 (261)
303 3eab_A Spastin; spastin, MIT, 35.5 28 0.00097 22.7 2.6 17 197-213 11-27 (89)
304 3kez_A Putative sugar binding 35.4 63 0.0021 28.5 5.9 52 38-93 173-224 (461)
305 3qnk_A Putative lipoprotein; a 35.1 75 0.0026 28.5 6.4 56 38-94 156-211 (517)
306 3efz_A 14-3-3 protein; 14-3-3, 34.8 1.5E+02 0.0053 23.8 7.3 90 38-128 117-226 (268)
307 4aez_C MAD3, mitotic spindle c 32.8 1.8E+02 0.006 22.8 12.2 87 36-131 94-182 (223)
308 3bqo_A Telomeric repeat-bindin 32.5 66 0.0023 24.6 4.6 25 73-98 126-150 (211)
309 2cfu_A SDSA1; SDS-hydrolase, l 31.9 62 0.0021 30.1 5.4 50 98-147 448-498 (658)
310 1wfd_A Hypothetical protein 15 31.7 77 0.0026 20.8 4.4 12 82-93 13-24 (93)
311 3mcx_A SUSD superfamily protei 31.3 60 0.002 28.7 5.0 53 38-94 179-231 (477)
312 4gq4_A Menin; tumor suppressor 30.6 1.1E+02 0.0036 26.7 6.0 48 201-248 282-332 (489)
313 3msv_A Nuclear import adaptor, 30.2 2.3E+02 0.0079 23.3 23.9 132 14-147 64-247 (393)
314 3u84_A Menin; MLL, JUND, ledgf 29.5 1.5E+02 0.0051 25.8 6.7 47 202-248 298-347 (550)
315 2cpt_A SKD1 protein, vacuolar 29.5 81 0.0028 21.7 4.4 16 111-126 30-45 (117)
316 4a1g_A Mitotic checkpoint seri 28.8 1.7E+02 0.0058 21.3 11.6 87 37-132 46-134 (152)
317 3re2_A Predicted protein; meni 28.8 1.1E+02 0.0039 25.9 5.8 45 84-128 276-325 (472)
318 2cpt_A SKD1 protein, vacuolar 28.1 1.5E+02 0.0051 20.4 8.4 15 198-212 14-28 (117)
319 3snx_A SUSD homolog, putative 27.4 1.2E+02 0.0042 26.6 6.3 56 38-94 163-220 (460)
320 3uzd_A 14-3-3 protein gamma; s 27.3 2.3E+02 0.008 22.5 16.0 178 67-247 7-202 (248)
321 3hdx_A SUSD homolog, SUSD supe 27.0 1.3E+02 0.0043 26.6 6.4 56 38-94 159-226 (478)
322 3myv_A SUSD superfamily protei 26.2 1.5E+02 0.0051 25.9 6.7 47 82-128 165-219 (454)
323 2v6x_A Vacuolar protein sortin 25.8 1.3E+02 0.0045 19.1 7.2 16 197-212 8-23 (85)
324 2br9_A 14-3-3E, 14-3-3 protein 25.6 2.5E+02 0.0084 22.1 15.1 177 68-247 9-201 (234)
325 2cfu_A SDSA1; SDS-hydrolase, l 24.9 1.5E+02 0.005 27.6 6.6 43 70-113 455-497 (658)
326 3kez_A Putative sugar binding 24.4 1.7E+02 0.0057 25.7 6.6 47 82-128 171-225 (461)
327 3u84_A Menin; MLL, JUND, ledgf 24.3 1.5E+02 0.0051 25.8 5.8 46 83-128 297-347 (550)
328 3qtm_A Uncharacterized protein 23.9 2.9E+02 0.0099 22.4 18.7 69 79-147 99-200 (346)
329 3mcx_A SUSD superfamily protei 23.4 1.8E+02 0.0063 25.5 6.8 47 82-128 177-231 (477)
330 2wvi_A Mitotic checkpoint seri 22.9 2.3E+02 0.0079 20.9 11.9 88 36-132 40-129 (164)
331 3lew_A SUSD-like carbohydrate 22.3 1.9E+02 0.0064 25.7 6.6 46 83-128 176-232 (495)
332 3uzd_A 14-3-3 protein gamma; s 22.2 3E+02 0.01 21.9 13.1 46 100-145 5-52 (248)
333 3bu8_A Telomeric repeat-bindin 21.8 2.9E+02 0.0098 21.5 6.9 52 225-276 120-172 (235)
334 3jq1_A SUSD superfamily protei 20.0 1.1E+02 0.0037 27.1 4.6 52 38-93 157-208 (481)
No 1
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=100.00 E-value=9.1e-32 Score=244.55 Aligned_cols=319 Identities=36% Similarity=0.591 Sum_probs=275.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCccchh----hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccH
Q 020060 6 EDIWARATKAADDLYHVKETFFPANPDDKVS----KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYR 81 (331)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (331)
.+.+..+.+.++.++.+++.||..++..... ...+.+++++..++.... .++..+.+++.+|.++...|+|.
T Consensus 44 ~~~~~~l~~~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~al~~l~~~~~----~~~~~a~~~~~lg~~~~~~g~~~ 119 (474)
T 4abn_A 44 KHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLG----SAQVEAQALMLKGKALNVTPDYS 119 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHSCGGGGGGHHHHHHHHHHHHHHHHHHHHT----TCCCCHHHHHHHHHHHTSSSSCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhc----cCchhHHHHHHHHHHHHhccccH
Confidence 5667888899999999999999988877533 667778888888876554 45578899999999999999943
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhcc-CchhHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQ-GSENQAEIVEESI 160 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~-~~~~~~~~~~~A~ 160 (331)
++|+.+|+++++++|+++.+|..+|.+|...|++++|+.+|+++++++|+..++..+|.++..++. ......+++++|+
T Consensus 120 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~ 199 (474)
T 4abn_A 120 PEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSV 199 (474)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHH
Confidence 889999999999999999999999999999999999999999999999998889999999998711 1111234799999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC---CChhHHhhHHHHHHHhhcHHH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK---SNPDLYFNCATVNKYLENYER 237 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~la~~~~~~g~~~~ 237 (331)
..++++++++|+++.+|+.+|.+|...++..+. ..|++++|+..|+++++.. | .++.+|+++|.++..+|++++
T Consensus 200 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 200 RQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999999999987666654 6689999999999999955 8 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHhhccccccC--------------CCcccc
Q 020060 238 ALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA--KTKRVASLASSLAVVKLS--------------SSHKRA 300 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~--~a~~l~~~~~~~~~~~~~--------------~~~~~~ 300 (331)
|+.+|++++.++|++... ..++.++..++++++|++.+. +..++..++..+....+. ......
T Consensus 277 A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~~~l~~~~~~l~~~~~g~~~~~~~~~~~g~~~~l~~~ 356 (474)
T 4abn_A 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELK 356 (474)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCCSGGGCC-----CBCC--CBCCCEEC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHhchhccCCccccchhccCCCCcceeeec
Confidence 999999999999999998 999999999999999996554 455667788887766541 123445
Q ss_pred ccchhhccCCcCceEEeEEeEeeecCCCCCC
Q 020060 301 TVDLLSEGLNKAVAVVGKVLFFVKHENVTPL 331 (331)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (331)
.+..+.++.|.+..+++++++.+.++..+|+
T Consensus 357 ~l~~l~~~~~~~~~~~~kv~~~~~~~~~~p~ 387 (474)
T 4abn_A 357 PLSTLQPGVNSGTVVLGKVVFSLTTEEKVPF 387 (474)
T ss_dssp CGGGCCSEECTTEEEEEEEEEEECCTTCCSE
T ss_pred cHhhcccccCCCeEEEEEEEEEecCCCCCce
Confidence 7778999999999999999999999988884
No 2
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.96 E-value=3.4e-28 Score=198.24 Aligned_cols=205 Identities=15% Similarity=0.088 Sum_probs=174.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..++.+|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++ .++..+|.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRY-DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4466889999999999998 999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHhccCch---hHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 141 LERSMAQGSE---NQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 141 ~~~~~g~~~~---~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
++...+.... ...|++++|+..++++++++|+++.+|..+|.++... |++++|+..|+++++. . +
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~--~-~ 149 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL---------GERDKAEASLKQALAL--E-D 149 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH--C-C
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhc--c-c
Confidence 9997700000 0003699999999999999999999999999999999 9999999999999994 4 8
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
++.+++++|.++..+|++++|+..|++++.++|++... ..++.++..+|++++|+..+.++.
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999998 999999999999999998888765
No 3
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=5.7e-26 Score=179.91 Aligned_cols=172 Identities=15% Similarity=0.122 Sum_probs=163.6
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
+.+.+|+.+|.++...|+| ++|+.+|+++++++|+++.++..+|.+|...|++++|+..+.+++...|+. .++..+|.
T Consensus 3 e~~~iy~~lG~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 4567899999999999998 999999999999999999999999999999999999999999999999998 88899999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...+ +++.|...+.+++..+|+++.++..+|.++... |++++|+..|+++++.+ |.++.
T Consensus 82 ~~~~~~--------~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~~l~~~--p~~~~ 142 (184)
T 3vtx_A 82 ANFMID--------EKQAAIDALQRAIALNTVYADAYYKLGLVYDSM---------GEHDKAIEAYEKTISIK--PGFIR 142 (184)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHh---------CCchhHHHHHHHHHHhc--chhhh
Confidence 999886 499999999999999999999999999999999 99999999999999955 99999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+++++|.++..+|++++|+.+|+++++++|++.
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 999999999999999999999999999999754
No 4
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.94 E-value=8.9e-26 Score=198.08 Aligned_cols=222 Identities=11% Similarity=0.076 Sum_probs=179.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+..+.+++.+|.++...|++ ++|+.+|++++.++|+++.++..+|.+|...|++++|+
T Consensus 79 g~~~~A~~~~~~al~----~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 153 (365)
T 4eqf_A 79 GDLPVTILFMEAAIL----QDPGDAEAWQFLGITQAENENE-QAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC 153 (365)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHH
Confidence 445555555555442 1234466777777777777776 77777777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCCh-HHHhh----------HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHh
Q 020060 120 NCFNLALSKGPNK-KILCQ----------LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLT 186 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~----------l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~ 186 (331)
.+|++++++.|++ ..+.. +|.++... +++++|+.+++++++.+|. ++.++..+|.++..
T Consensus 154 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS--------SVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp HHHHHHHHHCHHHHCC-------------------CC--------HHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 7777777777765 33333 35566655 4699999999999999999 89999999999999
Q ss_pred hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH
Q 020060 187 SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL 265 (331)
Q Consensus 187 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l 265 (331)
. |++++|+..|+++++.. |.++.+|.++|.++...|++++|+.+|++++.++|++... ..++.++..+
T Consensus 226 ~---------g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 226 S---------GEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp H---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred C---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 9 99999999999999955 9999999999999999999999999999999999999888 9999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHH
Q 020060 266 DKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 266 ~~~~~a~~~~~~a~~l~~~~ 285 (331)
|++++|+..+.++.++.+..
T Consensus 295 g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCccc
Confidence 99999999999999988653
No 5
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1.8e-25 Score=196.65 Aligned_cols=219 Identities=9% Similarity=0.031 Sum_probs=182.2
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccc-cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPE-YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
+++|+..+..+.. ..+....+|+.+|.++...|+ + ++|+.+|++++.++|++..+|+++|.++...|++++|+.
T Consensus 113 ~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g~d~-~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 113 SERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDL-HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp CHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcccCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 4455555554442 234567788999999999996 8 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
+|+++++++|++ .+|+++|.++..+| ++++|+.+++++++++|++..+|+++|.++..+ + |.+
T Consensus 188 ~~~kal~ldP~~~~a~~~lg~~~~~~g--------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l----~----~~~ 251 (382)
T 2h6f_A 188 FIADILNQDAKNYHAWQHRQWVIQEFK--------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT----T----GYN 251 (382)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHT--------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----T----CSC
T ss_pred HHHHHHHhCccCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh----c----Ccc
Confidence 999999999998 89999999999887 489999999999999999999999999999883 0 443
Q ss_pred HHH-----HHHHHHHHhchhcCCChhHHhhHHHHHHHhh--cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH-----
Q 020060 200 LQS-----LKAYQNAEKDERMKSNPDLYFNCATVNKYLE--NYERALSGFEASALKDPSLNAT-EEVQMMVNLLD----- 266 (331)
Q Consensus 200 ~~A-----~~~~~~al~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~----- 266 (331)
++| +.+|++++..+ |++..+|+++|.++...| ++++|+..+.++ ..+|++... ..++.++..++
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 68899999855 999999999999999887 689999999887 888888887 88999988875
Q ss_pred ----HHHHHHHhhhhh-hhHHHH
Q 020060 267 ----KIENLLKGHAKT-KRVASL 284 (331)
Q Consensus 267 ----~~~~a~~~~~~a-~~l~~~ 284 (331)
.+++|++.+.++ .++++.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGG
T ss_pred chHHHHHHHHHHHHHHHHHhCch
Confidence 357888888887 665554
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=5.3e-25 Score=194.84 Aligned_cols=199 Identities=21% Similarity=0.238 Sum_probs=129.7
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
...++..+|.++...|++ ++|+.+|++++.++|+++.++..+|.++...|++++|+..|++++.++|++ .++..+|.+
T Consensus 168 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 168 FAVAWSNLGCVFNAQGEI-WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp CHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 344555666666666665 666666666666666666666666666666666666666666666666655 555666666
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+...| ++++|+..++++++.+|+++.+|..+|.++... |++++|+..|+++++.. |.++.+
T Consensus 247 ~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~ 307 (388)
T 1w3b_A 247 YYEQG--------LIDLAIDTYRRAIELQPHFPDAYCNLANALKEK---------GSVAEAEDCYNTALRLC--PTHADS 307 (388)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH---------SCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHcC--------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--cccHHH
Confidence 66554 366666677666666666666666666666666 66677777777666643 666666
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
+.++|.++...|++++|+..|++++..+|++... ..++.++...|++++|+..+.++.++
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777766677777777777776666666665 66666666666666666666666543
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=2.6e-25 Score=195.66 Aligned_cols=199 Identities=12% Similarity=0.060 Sum_probs=181.8
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC-hhHHHHHHHHHHhcCCCh-HHHh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD-LPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
..+....++..+|.++...|++ ++|+.+|++++.++|++..+|+.+|.++...|+ +++|+.+|+++++++|++ .+|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~-~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERS-ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCCh-HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3456788899999999999998 999999999999999999999999999999997 999999999999999999 9999
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
++|.++..+| ++++|+.+|+++++++|++..+|+++|.++..+ |++++|+.+|+++++.+ |
T Consensus 171 ~~g~~~~~~g--------~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~---------g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 171 HRRVLVEWLR--------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEF---------KLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp HHHHHHHHHT--------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCCTTHHHHHHHHHHHC--T
T ss_pred HHHHHHHHcc--------CHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhC--C
Confidence 9999999887 499999999999999999999999999999999 99999999999999965 9
Q ss_pred CChhHHhhHHHHHHH-hhcHHHH-----HHHHHHHHhcCCCCcHH-HHHHHHHHHHH--HHHHHHHhhhh
Q 020060 217 SNPDLYFNCATVNKY-LENYERA-----LSGFEASALKDPSLNAT-EEVQMMVNLLD--KIENLLKGHAK 277 (331)
Q Consensus 217 ~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~-~~l~~~~~~l~--~~~~a~~~~~~ 277 (331)
.++.+|+++|.++.. .|.+++| +.+|++++.++|++..+ ..++.++...| ++.++++.+.+
T Consensus 232 ~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 999999999999999 5554788 59999999999999988 88888887766 46666654443
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=185.94 Aligned_cols=222 Identities=14% Similarity=0.117 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
++.++|+..+..... ..+....+++.+|.++...| ++ ++|+.+|++++..+|.++.+|..+|.++...|++++|
T Consensus 70 ~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 70 NKANELFYLSHKLVD----LYPSNPVSWFAVGCYYLMVGHKN-EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp TCHHHHHHHHHHHHH----HCTTSTHHHHHHHHHHHHSCSCH-HHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHH
T ss_pred hhHHHHHHHHHHHHH----hCcCCHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHH
Confidence 344555555554432 22355678999999999999 87 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|+++++..|.+ ..+..+|.++...| ++++|+..++++++.+|+++.++..+|.++... |
T Consensus 145 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------~ 207 (330)
T 3hym_B 145 MAAYFTAAQLMKGCHLPMLYIGLEYGLTN--------NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQN---------G 207 (330)
T ss_dssp HHHHHHHHHHTTTCSHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT---------T
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------c
Confidence 99999999999998 88888999999887 499999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhc-------CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERM-------KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~ 269 (331)
++++|+..+++++..... |..+.++.++|.++...|++++|+.+|++++.++|++... ..++.++..+|+++
T Consensus 208 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 287 (330)
T 3hym_B 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFE 287 (330)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHH
Confidence 999999999999984211 5667889999999999999999999999999999999988 99999999999999
Q ss_pred HHHHhhhhhhhHHH
Q 020060 270 NLLKGHAKTKRVAS 283 (331)
Q Consensus 270 ~a~~~~~~a~~l~~ 283 (331)
+|+..+.++.++.+
T Consensus 288 ~A~~~~~~al~~~p 301 (330)
T 3hym_B 288 NAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHTTTTTCS
T ss_pred HHHHHHHHHHccCC
Confidence 99999999887643
No 9
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=8.8e-24 Score=185.21 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=183.4
Q ss_pred HHHHHHHH-HhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 40 NESDLALR-LLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 40 ~~~~~a~~-~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
+.+++++. .+..........+......++.+|.++...|++ ++|+.+|+++++.+|.++.++..+|.++...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDL-PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCH-HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555665 555443322223333455677778788888886 7788888888888887777888888888888888888
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh-----------------------------------------HHHHH
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN-----------------------------------------QAEIV 156 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~-----------------------------------------~~~~~ 156 (331)
+.+|+++++++|++ .++..+|.++...|+.... ..+++
T Consensus 118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 88888888777777 6777777777766542110 23568
Q ss_pred HHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 157 EESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 157 ~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
++|+..++++++.+|. ++.++..+|.++... |++++|+..|++++... |.++.++.++|.++...|+
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS---------GEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888 788999999999998 99999999999999955 9999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 235 YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
+++|+.+|++++.++|++... ..++.++..+|++++|+..+.++.++.+..
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999888 999999999999999999999999887654
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.93 E-value=1.4e-24 Score=190.53 Aligned_cols=205 Identities=18% Similarity=0.166 Sum_probs=184.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+......++.+|..+...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++++|++ .++..
T Consensus 60 ~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 138 (365)
T 4eqf_A 60 NPFKDWPGAFEEGLKRLKEGDL-PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMA 138 (365)
T ss_dssp CTTTTCTTHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccchhHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4445667789999999999998 999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH----------HHHHHhhhhhcCCCChhhHHHHHHHHH
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL----------GNACLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
+|.++...| ++++|+.+++++++..|+++..+..+ |.++... |++++|+..|+
T Consensus 139 l~~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~ 201 (365)
T 4eqf_A 139 LAVSYTNTS--------HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS---------SVLEGVKELYL 201 (365)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHCHHHHCC-------------------CC---------HHHHHHHHHHH
T ss_pred HHHHHHccc--------cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh---------hhHHHHHHHHH
Confidence 999999887 49999999999999999887777665 8888877 99999999999
Q ss_pred HHHhchhcCC--ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 208 NAEKDERMKS--NPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 208 ~al~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+++... |. ++.++.++|.++...|++++|+.+|++++..+|++... ..++.++...|++++|+..+.++.++.+
T Consensus 202 ~al~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 202 EAAHQN--GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHS--CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhC--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999955 88 89999999999999999999999999999999999988 9999999999999999999999987644
No 11
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=9.9e-25 Score=193.07 Aligned_cols=195 Identities=18% Similarity=0.152 Sum_probs=100.9
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+..+|.++...|++ ++|+..|+++++.+|+...++..+|.++...|++++|+.+|+++++..|++ .++..+|.++...
T Consensus 104 ~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (388)
T 1w3b_A 104 YINLAAALVAAGDM-EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182 (388)
T ss_dssp HHHHHHHHHHHSCS-SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 33333333333333 333333333333333333333333333333444444444444444444433 3334444444433
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
| ++++|+..|+++++.+|+++.++..+|.++... |++++|+..|++++... |+++.++.++
T Consensus 183 g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~l 243 (388)
T 1w3b_A 183 G--------EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA---------RIFDRAVAAYLRALSLS--PNHAVVHGNL 243 (388)
T ss_dssp T--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---------TCTTHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred C--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhC--cCCHHHHHHH
Confidence 3 255555555555555555555555555555544 55555555555555533 6666666666
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 226 ATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 226 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
|.++...|++++|+..|++++..+|+++.. ..++.++...|++++|+..+.++.++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666666666666666666666665 66666666666666666666666554
No 12
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.7e-24 Score=175.39 Aligned_cols=204 Identities=16% Similarity=0.192 Sum_probs=186.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--------H
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--------K 133 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------~ 133 (331)
..+..++.+|.++...|+| ++|+.+|+++++.+ .++.++..+|.++...|++++|+.++++++++.|+. .
T Consensus 3 ~~a~~~~~~g~~~~~~~~~-~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQF-DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 5678899999999999998 99999999999999 889999999999999999999999999999988754 6
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc--------------------------CCCCCchhHHHHHHHHHhh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT--------------------------LDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~ 187 (331)
++..+|.++...|+ +++|+.++++++. .+|.++.++..+|.++...
T Consensus 81 ~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGD--------LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccc--------HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 78889999998874 6666666666666 8888899999999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHH
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLD 266 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~ 266 (331)
|++++|+..|++++... |.++.++.++|.++...|++++|+.+|++++..+|++... ..++.++..+|
T Consensus 153 ---------~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 221 (258)
T 3uq3_A 153 ---------SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221 (258)
T ss_dssp ---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred ---------cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999955 9999999999999999999999999999999999999988 99999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHh
Q 020060 267 KIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 267 ~~~~a~~~~~~a~~l~~~~~ 286 (331)
++++|+..+.++.++.+...
T Consensus 222 ~~~~A~~~~~~a~~~~~~~~ 241 (258)
T 3uq3_A 222 EYASALETLDAARTKDAEVN 241 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhChhhc
Confidence 99999999999999885543
No 13
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=8e-24 Score=173.44 Aligned_cols=172 Identities=15% Similarity=0.110 Sum_probs=158.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP-SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
+..++.+|.++...|+| ++|+.+|++++.++| .+..+++.+|.++...|++++|+.+|+++++.+|++ .++..+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 47899999999999998 999999999999999 899999999999999999999999999999999999 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-------hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-------NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
+..+| ++++|+..++++++.+|+++ .+|..+|.++... |++++|+..|+++++..
T Consensus 86 ~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~- 147 (228)
T 4i17_A 86 YRDMK--------NNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA---------GNIEKAEENYKHATDVT- 147 (228)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHTTSS-
T ss_pred HHHcc--------cHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh---------ccHHHHHHHHHHHHhcC-
Confidence 99887 49999999999999999998 6699999999988 99999999999999965
Q ss_pred cCC--ChhHHhhHHHHHHHhhcH---------------------------HHHHHHHHHHHhcCCCCcHH
Q 020060 215 MKS--NPDLYFNCATVNKYLENY---------------------------ERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 215 ~~~--~~~~~~~la~~~~~~g~~---------------------------~~A~~~~~~al~~~~~~~~~ 255 (331)
|. ++.+++++|.++...|+. ++|+.+|+++++++|++...
T Consensus 148 -p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 148 -SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 99 899999999999998887 77777777777777777654
No 14
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.92 E-value=2.2e-24 Score=175.63 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=152.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--------
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-------- 112 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------- 112 (331)
++++|+..++.... ..+..+.+++.+|.++...|++ ++|+..|+++++++|+++.++..+|.++...
T Consensus 20 ~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~ 94 (217)
T 2pl2_A 20 RYDAALTLFERALK----ENPQDPEALYWLARTQLKLGLV-NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE 94 (217)
T ss_dssp CHHHHHHHHHHHHT----TSSSCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred CHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence 34566666665443 3346678899999999999997 9999999999999999999999999999999
Q ss_pred ---CChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 113 ---GDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 113 ---g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
|++++|+..|+++++++|++ .++..+|.++..+| ++++|+..|+++++++ +++.++..+|.++...
T Consensus 95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~- 164 (217)
T 2pl2_A 95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG--------ERDKAEASLKQALALE-DTPEIRSALAELYLSM- 164 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHc-
Confidence 99999999999999999999 89999999999887 4999999999999999 9999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
|++++|+..|+++++.. |+++.++.++|.++..+|++++|+.+|+++-
T Consensus 165 --------g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 165 --------GRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp --------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred --------CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999955 9999999999999999999999999998764
No 15
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.92 E-value=2.9e-24 Score=202.88 Aligned_cols=173 Identities=18% Similarity=0.166 Sum_probs=164.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..|..+.+++++|.++...|++ ++|+.+|+++++++|+++.++.++|.+|...|++++|+.+|+++++++|++ .++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~-~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4567889999999999999998 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++..+| ++++|+++|+++++++|+++.+|+++|.+|... |++++|+..|+++++.+ |+
T Consensus 83 Lg~~l~~~g--------~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~---------g~~~eAi~~~~~Al~l~--P~ 143 (723)
T 4gyw_A 83 MGNTLKEMQ--------DVQGALQCYTRAIQINPAFADAHSNLASIHKDS---------GNIPEAIASYRTALKLK--PD 143 (723)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--SC
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CC
Confidence 999999887 499999999999999999999999999999999 99999999999999965 99
Q ss_pred ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 218 NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++.++.++|.++..+|++++|...|++++++.|+
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999999999987554
No 16
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.92 E-value=3e-23 Score=172.35 Aligned_cols=204 Identities=17% Similarity=0.111 Sum_probs=191.3
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
++...+.+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++..|.+ .++..
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNT-EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCT-GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 4455589999999999999998 999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhc--CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAIT--LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM 215 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 215 (331)
+|.++...| ++++|+.++++++. ..|.++.++..+|.++... |++++|+..+++++...
T Consensus 111 la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~-- 171 (252)
T 2ho1_A 111 YGGFLYEQK--------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM---------KKPAQAKEYFEKSLRLN-- 171 (252)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHh--------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC--
Confidence 999999887 49999999999999 8888899999999999999 99999999999999955
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
|.++.++..+|.++...|++++|..+|++++...|++... ..++.++...|++++|...+.++.++.
T Consensus 172 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999887 889999999999999999988887654
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.91 E-value=6.2e-24 Score=175.21 Aligned_cols=204 Identities=15% Similarity=0.141 Sum_probs=171.7
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
+...+..++.+|..+...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++..|.+ .++..+
T Consensus 19 ~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 19 SHMASMTGGQQMGRGSEFGDY-EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345677889999999999998 999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|.++...| ++++|+..++++++..|.++.++..+|.++... |++++|+..+++++... |.+
T Consensus 98 a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~ 158 (243)
T 2q7f_A 98 GNVYVVKE--------MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL---------EQPKLALPYLQRAVELN--END 158 (243)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT---------SCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHhc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhC--Ccc
Confidence 99999887 499999999999999999999999999999999 99999999999999955 999
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.++..+|.++...|++++|+.+|++++..+|++... ..++.++...|++++|+..+.++.++.+
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999888 9999999999999999999999887644
No 18
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.91 E-value=2.4e-23 Score=164.68 Aligned_cols=170 Identities=17% Similarity=0.265 Sum_probs=161.8
Q ss_pred CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 97 SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
+++.+|+++|.+|...|++++|+.+|+++++++|++ .++..+|.++..+| ++++|+..+.+++...|+++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~ 74 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--------LPNDAIESLKKFVVLDTTSAE 74 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCCCCHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCchhHH
Confidence 467899999999999999999999999999999999 99999999999887 499999999999999999999
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
++..+|.++... ++++.|+..+.+++... |.++.++..+|.++..+|++++|+.+|+++++++|++...
T Consensus 75 ~~~~~~~~~~~~---------~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 143 (184)
T 3vtx_A 75 AYYILGSANFMI---------DEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRA 143 (184)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhH
Confidence 999999999998 99999999999999955 9999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
..+|.++..+|++++|++.|.+|.+++|..
T Consensus 144 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 144 YQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 999999999999999999999999887653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.4e-23 Score=180.88 Aligned_cols=220 Identities=12% Similarity=0.028 Sum_probs=194.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAA 118 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A 118 (331)
+++++|+..+..+.. ..+.....+..++.++...|++ ++|+..+.+++..+|+++.++..+|.++...| ++++|
T Consensus 36 g~~~~A~~~~~~~l~----~~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 110 (330)
T 3hym_B 36 CDFKMCYKLTSVVME----KDPFHASCLPVHIGTLVELNKA-NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHA 110 (330)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCTTTHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHH
T ss_pred CCHHHHHHHHHHHHH----cCCCChhhHHHHHHHHHHhhhH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHH
Confidence 344555555554432 2234455677788899999997 99999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|+++++.+|.+ .++..+|.++...| ++++|+..++++++..|++..++..+|.++... |
T Consensus 111 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---------~ 173 (330)
T 3hym_B 111 RRYLSKATTLEKTYGPAWIAYGHSFAVES--------EHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLT---------N 173 (330)
T ss_dssp HHHHHHHHTTCTTCTHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHT---------T
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH---------h
Confidence 99999999999998 88999999999887 499999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC---------CCCcHH-HHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD---------PSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~-~~l~~~~~~l~~ 267 (331)
++++|+..+++++... |.++.++..+|.++...|++++|+.+|++++... |..... ..++.++...|+
T Consensus 174 ~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 174 NSKLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp CHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999955 9999999999999999999999999999999986 555566 999999999999
Q ss_pred HHHHHHhhhhhhhHHH
Q 020060 268 IENLLKGHAKTKRVAS 283 (331)
Q Consensus 268 ~~~a~~~~~~a~~l~~ 283 (331)
+++|+..+.++.++.+
T Consensus 252 ~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 252 YAEALDYHRQALVLIP 267 (330)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999887643
No 20
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=1e-22 Score=165.59 Aligned_cols=203 Identities=13% Similarity=0.033 Sum_probs=184.3
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.++..+.+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|++++...|.+ .++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 81 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDY-RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNN 81 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHH
Confidence 3457788999999999999998 999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHh-ccCchhHHHHHHHHHHHHHHHhc--CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 138 LSMLERSM-AQGSENQAEIVEESIQHAKEAIT--LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 138 l~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
+|.++... |+ +++|+.+++++++ ..|.++.++..+|.++... |++++|+..++++++..
T Consensus 82 l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~- 143 (225)
T 2vq2_A 82 YGWFLCGRLNR--------PAESMAYFDKALADPTYPTPYIANLNKGICSAKQ---------GQFGLAEAYLKRSLAAQ- 143 (225)
T ss_dssp HHHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC-
Confidence 99999988 84 9999999999999 6677788999999999999 99999999999999955
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC-CCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDP-SLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
|.++.++..+|.++...|++++|..+|++++...| .+... ..++.++...|+.+++...+..+.+.
T Consensus 144 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 144 -PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 88777 77777778888888777666665543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.91 E-value=5.7e-23 Score=180.02 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=192.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+....+++.+|.++...|++ ++|+.+|++++.++|+++.++..+|.++...|++++|+
T Consensus 78 g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 152 (368)
T 1fch_A 78 GDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQE-LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQAC 152 (368)
T ss_dssp TCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455667766666543 2345677899999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh----------------------------------------------------HHHhhHHHHHHHhcc
Q 020060 120 NCFNLALSKGPNK----------------------------------------------------KILCQLSMLERSMAQ 147 (331)
Q Consensus 120 ~~~~~al~~~~~~----------------------------------------------------~~~~~l~~~~~~~g~ 147 (331)
.+|++++...|.+ .++..+|.++...|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g- 231 (368)
T 1fch_A 153 EILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG- 231 (368)
T ss_dssp HHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC-
Confidence 9888888776643 44566777777666
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
++++|+.++++++..+|+++.++..+|.++... |++++|+..|++++... |.++.++.++|.
T Consensus 232 -------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~~--~~~~~~~~~l~~ 293 (368)
T 1fch_A 232 -------EYDKAVDCFTAALSVRPNDYLLWNKLGATLANG---------NQSEEAVAAYRRALELQ--PGYIRSRYNLGI 293 (368)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Confidence 599999999999999999999999999999999 99999999999999955 999999999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCC-----------cHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 228 VNKYLENYERALSGFEASALKDPSL-----------NAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++..+|++++|..+|++++.+.|++ ... ..++.++..+|++++|...+.++.....
T Consensus 294 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 294 SCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 9999999999999999999999987 556 8999999999999999988887776543
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=1.3e-22 Score=176.53 Aligned_cols=201 Identities=12% Similarity=0.029 Sum_probs=188.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..++.+|..+...|+| ++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++..|++ .++..+|.+
T Consensus 2 ~~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 356789999999999998 999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCC---CCchhHHHH------------HHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDV---KDGNSWYNL------------GNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l------------~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
+...| ++++|+..++++++.+| +++.++..+ |.++... |++++|+..+
T Consensus 81 ~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~ 143 (359)
T 3ieg_A 81 LLKQG--------KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG---------ADYTAAITFL 143 (359)
T ss_dssp HHHHT--------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHH
T ss_pred HHHcC--------ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc---------cCHHHHHHHH
Confidence 99887 49999999999999999 888888887 6778877 9999999999
Q ss_pred HHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 207 QNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 207 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
++++... |.++.++..+|.++...|++++|+..|++++..+|++... ..++.++...|++++|+..+.++.++.+
T Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 144 DKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 9999955 9999999999999999999999999999999999999998 9999999999999999999998886643
No 23
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=7.2e-23 Score=178.21 Aligned_cols=217 Identities=16% Similarity=0.136 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
+++|+..+..... ..+....+++.+|.++...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+
T Consensus 19 ~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 19 LADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKS-KAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp HHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 3444544444332 2234567899999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC---Ch-HHHhhH------------HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 122 FNLALSKGP---NK-KILCQL------------SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 122 ~~~al~~~~---~~-~~~~~l------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
|+++++..| ++ .++..+ |.++...| ++++|+.+++++++.+|.++.++..+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--------DYTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999 66 666655 67777776 5999999999999999999999999999999
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-H--------
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-E-------- 256 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~-------- 256 (331)
.. |++++|+..+++++... |.++.++..+|.++...|++++|..+|++++..+|++... .
T Consensus 166 ~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 166 KE---------GEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HT---------TCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHH
Confidence 99 99999999999999955 9999999999999999999999999999999999998875 3
Q ss_pred ----HHHHHHHHHHHHHHHHHhhhhhhhHH
Q 020060 257 ----EVQMMVNLLDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 257 ----~l~~~~~~l~~~~~a~~~~~~a~~l~ 282 (331)
.++.++...|++++|+..+.++..+.
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 264 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTE 264 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 33777888999999998888887654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.91 E-value=3.4e-23 Score=178.22 Aligned_cols=221 Identities=12% Similarity=0.002 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..++.... ..+....++..+|.++...|++ ++|+.++++++..+|.++.++..+|.++...|++++|+
T Consensus 35 ~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 35 ANLAEAALAFEAVCQ----AAPEREEAWRSLGLTQAENEKD-GLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 345566666655442 2234567888999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhH--------------HH-HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 020060 120 NCFNLALSKGPNK-KILCQL--------------SM-LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA 183 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l--------------~~-~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 183 (331)
.+|+++++..|.. ..+..+ +. ++... +++++|+.+++++++..|.++.++..+|.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 110 ASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP--------NEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHTSTTTTTC--------------------CCTTSH--------HHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc--------ccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999999999988 444444 33 34433 579999999999999999999999999999
Q ss_pred HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH
Q 020060 184 CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMV 262 (331)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~ 262 (331)
+... |++++|+..+++++... |.++.++..+|.++...|++++|+.+|++++..+|++... ..++.++
T Consensus 182 ~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 182 YNLS---------NNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHh---------ccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 9999 99999999999999955 9999999999999999999999999999999999999888 9999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHH
Q 020060 263 NLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 263 ~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..+|++++|++.+.++.++.+.
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHhccHHHHHHHHHHHHHhCCc
Confidence 9999999999999999887655
No 25
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.91 E-value=1.9e-22 Score=168.73 Aligned_cols=200 Identities=12% Similarity=0.025 Sum_probs=171.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----H
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----K 133 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~ 133 (331)
+..+..++.+|..++..|+| ++|+..|++++...|++ +.+++.+|.+|...|++++|+..|+++++..|++ .
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKY-DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCH-HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 45678899999999999998 99999999999999998 8999999999999999999999999999998865 6
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhhhcCCCCh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~~~~ 196 (331)
+++.+|.++...+.......+++++|+..|+++++.+|+++.++ +.+|.+|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~--------- 161 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR--------- 161 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------
Confidence 88999999997111000012479999999999999999998777 8889999999
Q ss_pred hhHHHHHHHHHHHHhchhcCC---ChhHHhhHHHHHHHh----------hcHHHHHHHHHHHHhcCCCCcHH----HHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKS---NPDLYFNCATVNKYL----------ENYERALSGFEASALKDPSLNAT----EEVQ 259 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~----~~l~ 259 (331)
|++++|+..|+++++.. |+ .+.+++.+|.++..+ |++++|+..|++++..+|+++.. ..++
T Consensus 162 g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 162 ELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp TCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999854 77 456899999999987 99999999999999999999753 5556
Q ss_pred HHHHHHHHHHHHH
Q 020060 260 MMVNLLDKIENLL 272 (331)
Q Consensus 260 ~~~~~l~~~~~a~ 272 (331)
.+...+++++.+.
T Consensus 240 ~~~~~~~~~~~~~ 252 (261)
T 3qky_A 240 RARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHhhhhh
Confidence 6666666665443
No 26
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=1.8e-23 Score=197.43 Aligned_cols=173 Identities=17% Similarity=0.205 Sum_probs=165.0
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK 172 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~ 172 (331)
..|++++++.++|.+|..+|++++|+.+|+++++++|++ .++.++|.++..+| ++++|+.+|+++++++|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--------~~~eA~~~~~~Al~l~P~ 75 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--------KLQEALMHYKEAIRISPT 75 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTT
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999999999 99999999999887 499999999999999999
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++.+|+++|.++..+ |++++|+..|+++++.+ |+++.+++++|.++..+|++++|+.+|+++++++|++
T Consensus 76 ~~~a~~nLg~~l~~~---------g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 76 FADAYSNMGNTLKEM---------QDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp CHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 99999999999999965 9999999999999999999999999999999999999
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 253 NAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
..+ .+++.++..++++++|.+.+.++.++.+..
T Consensus 145 ~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 145 PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 998 999999999999999999999999887653
No 27
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.90 E-value=1.2e-22 Score=170.56 Aligned_cols=198 Identities=12% Similarity=0.074 Sum_probs=176.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSM 140 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~ 140 (331)
..++..|.++...|++ ++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++..++. .++..+|.
T Consensus 4 ~~~~~~a~~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNY-AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 4577889999999998 999999999999999999999999999999999999999999999943222 35889999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++...| ++++|+.+++++++.+|.++.+|..+|.++... |++++|+.+|++++... |.++.
T Consensus 83 ~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~--~~~~~ 143 (272)
T 3u4t_A 83 ILMKKG--------QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK---------GNFPLAIQYMEKQIRPT--TTDPK 143 (272)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT---------TCHHHHHHHHGGGCCSS--CCCHH
T ss_pred HHHHcc--------cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------cCHHHHHHHHHHHhhcC--CCcHH
Confidence 999887 499999999999999999999999999999999 99999999999999965 99999
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH---HHHHHHhhhhhhhHH
Q 020060 221 LYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK---IENLLKGHAKTKRVA 282 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~---~~~a~~~~~~a~~l~ 282 (331)
+++++|...+..+++++|+.+|+++++++|++... ..++.++..+++ +++|+..+.++.++.
T Consensus 144 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 99999955555669999999999999999999887 889999999988 777888888888765
No 28
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.90 E-value=2.3e-22 Score=162.51 Aligned_cols=171 Identities=13% Similarity=0.124 Sum_probs=150.0
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHH----------------HHHHHHHhCChhHHHHHHHHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLC----------------LGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------------lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
+..++..|..+...|+| ++|+.+|++++..+|+++.+++. +|.+|...|++++|+.+|+++++
T Consensus 4 ~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQN-GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999998 99999999999999999999999 99999999999999999999999
Q ss_pred cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHH
Q 020060 128 KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAY 206 (331)
Q Consensus 128 ~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~ 206 (331)
++|++ .++..+|.++...| ++++|+.+|+++++++|+++.+|+.+|.+|... ..+....+...+
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~-------~~~~~~~~~~~~ 147 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRG--------QEKDALRMYEKILQLEADNLAANIFLGNYYYLT-------AEQEKKKLETDY 147 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------hHHHHHHHHHHH
Confidence 99999 99999999999887 499999999999999999999999999999876 113456677788
Q ss_pred HHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 207 QNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 207 ~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
.+++.. +....+++++|.++..+|++++|+.+|+++++++|+..
T Consensus 148 ~~~~~~---~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 148 KKLSSP---TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp C---CC---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HHHhCC---CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 777641 12234688899999999999999999999999999854
No 29
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.3e-22 Score=182.59 Aligned_cols=218 Identities=14% Similarity=0.129 Sum_probs=190.1
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
+++|+..+..+.. ..+....+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+
T Consensus 42 ~~~A~~~~~~~l~----~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 42 LADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKS-KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH----hCCccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555554432 1234578899999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh----HHHhh------------HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 122 FNLALSKGPNK----KILCQ------------LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 122 ~~~al~~~~~~----~~~~~------------l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
|+++++.+|++ .++.. +|.++...| ++++|+..++++++..|.++.++..+|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG--------DYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999986 23333 356677665 5999999999999999999999999999999
Q ss_pred hhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHH------
Q 020060 186 TSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEV------ 258 (331)
Q Consensus 186 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l------ 258 (331)
.. |++++|+..|+++++.. |.++.++..+|.++...|++++|+.+|++++..+|++... ..+
T Consensus 189 ~~---------g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 189 KE---------GEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HT---------TCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HC---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99 99999999999999955 9999999999999999999999999999999999998876 544
Q ss_pred ------HHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 259 ------QMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 259 ------~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.++...|++++|+..+.++..+.+
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8889999999999999988876543
No 30
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.90 E-value=8.5e-23 Score=168.35 Aligned_cols=200 Identities=18% Similarity=0.238 Sum_probs=174.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+....+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+
T Consensus 37 ~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 111 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIE----ENKEDAIPYINFANLLSSVNEL-ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAK 111 (243)
T ss_dssp -----CCTTHHHHHT----TCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHH
Confidence 344444444444332 2234577899999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+|+++++..|.+ .++..+|.++...| ++++|+..++++++..|.++.++..+|.++... |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~ 174 (243)
T 2q7f_A 112 DMFEKALRAGMENGDLFYMLGTVLVKLE--------QPKLALPYLQRAVELNENDTEARFQFGMCLANE---------GM 174 (243)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHTS--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHc---------CC
Confidence 9999999999988 88999999999887 499999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVN 263 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~ 263 (331)
+++|+..+++++... |.++.++..+|.++...|++++|..+|++++.++|++... ..++.+..
T Consensus 175 ~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 999999999999955 9999999999999999999999999999999999999876 55554443
No 31
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.89 E-value=5.7e-21 Score=160.33 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=164.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
.++++|+..+..+.......++..+.+++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLR-ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 44455555554443221124567889999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+|+++++++|.+ .++..+|.++..+| ++++|+.+++++++.+|+++.....++.+ ... |+
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~---------~~ 159 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGG--------RDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQK---------LD 159 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHH---------HC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHh---------cC
Confidence 9999999999988 89999999999887 49999999999999999888665555443 444 77
Q ss_pred HHHHHHHHHHHHhchhcCCC-------------------------------------hhHHhhHHHHHHHhhcHHHHHHH
Q 020060 199 LLQSLKAYQNAEKDERMKSN-------------------------------------PDLYFNCATVNKYLENYERALSG 241 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~-------------------------------------~~~~~~la~~~~~~g~~~~A~~~ 241 (331)
+++|+..+.+++... |.+ +.++..+|.++...|++++|..+
T Consensus 160 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 237 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237 (275)
T ss_dssp HHHHHHHHHHHHHHS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777776666522 222 45677788888888888888888
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 020060 242 FEASALKDPSLNATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 242 ~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
|++++..+|++... .+.++..++++.+|++.+
T Consensus 238 ~~~al~~~p~~~~~--~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 238 FKLAVANNVHNFVE--HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCCTTCHH--HHHHHHHHHHHHHC----
T ss_pred HHHHHhCCchhHHH--HHHHHHHHHHHHhhHHHH
Confidence 88888887766432 355667777777777665
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.89 E-value=4.4e-23 Score=173.17 Aligned_cols=202 Identities=11% Similarity=0.061 Sum_probs=177.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
....+++.+|.++...|++ ++|+.++++++. .|.+ ..++..+|.++...|++++|+.+|+++++.+|.+ .++.
T Consensus 35 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 112 (272)
T 3u4t_A 35 NSPYIYNRRAVCYYELAKY-DLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112 (272)
T ss_dssp CCSTTHHHHHHHHHHTTCH-HHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CcHHHHHHHHHHHHHHhhH-HHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHH
Confidence 3455788999999999998 999999999999 4433 5569999999999999999999999999999998 8999
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
.+|.++...| ++++|+.+++++++.+|.++.+|..+|...... +++++|+..|+++++.. |
T Consensus 113 ~l~~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~--p 173 (272)
T 3u4t_A 113 QIGSYFYNKG--------NFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYN---------KEYVKADSSFVKVLELK--P 173 (272)
T ss_dssp HHHHHHHHTT--------CHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHcc--------CHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhC--c
Confidence 9999999887 499999999999999999999999999444445 79999999999999955 9
Q ss_pred CChhHHhhHHHHHHHhhc---HHHHHHHHHHHHhcC---CCCc-----HH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 217 SNPDLYFNCATVNKYLEN---YERALSGFEASALKD---PSLN-----AT-EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---~~~~-----~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.++.++..+|.++..+|+ +++|+..|++++.+. |+.. .. ..+|.++...|++++|+..+.++.++.|.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 174 NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999 999999999999986 4421 23 77899999999999999999999887654
No 33
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=4.5e-22 Score=179.15 Aligned_cols=204 Identities=13% Similarity=0.027 Sum_probs=189.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..++.+|..+...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++.+|++ .++..
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQL-ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4457788999999999999998 999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc---hhHHHH------------HHHHHhhhhhcCCCChhhHHHH
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG---NSWYNL------------GNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l------------~~~~~~~~~~~~~~~~~~~~~A 202 (331)
+|.++..+| ++++|+.+|+++++.+|+++ .++..+ |.++... |++++|
T Consensus 100 l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~---------~~~~~A 162 (450)
T 2y4t_A 100 RGHLLLKQG--------KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS---------GDYTAA 162 (450)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------TCHHHH
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHH
Confidence 999999887 49999999999999999988 777666 5557777 999999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
+..|++++... |.++.++..+|.++...|++++|+.+|++++..+|++... ..++.++...|++++|+..+.++..+
T Consensus 163 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999955 9999999999999999999999999999999999999888 99999999999999999999988766
Q ss_pred H
Q 020060 282 A 282 (331)
Q Consensus 282 ~ 282 (331)
.
T Consensus 241 ~ 241 (450)
T 2y4t_A 241 D 241 (450)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=3.3e-22 Score=186.51 Aligned_cols=204 Identities=13% Similarity=0.119 Sum_probs=188.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
....++..+|.+|...|++ ++|+.+|+++++.+|.+..+|..+|.+|...|++++|+..|+++++..|.+ ..+..++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKI-SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4567888999999999997 999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch----hcC
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE----RMK 216 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~~ 216 (331)
++...| ++++|+.+|+++++..|.++.+|..+|.++... |++++|+..|+++++.. ..|
T Consensus 450 ~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 450 QHMQLG--------NILLANEYLQSSYALFQYDPLLLNELGVVAFNK---------SDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHHHHT--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHhhhccccch
Confidence 999877 599999999999999999999999999999999 99999999999999852 134
Q ss_pred CC-hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 217 SN-PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 217 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.+ ..+|..+|.++...|++++|...|++++..+|++... ..++.++...|++++|.+.+.++.++.+
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 43 6789999999999999999999999999999999888 9999999999999999999999988754
No 35
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=5e-22 Score=182.78 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=194.2
Q ss_pred HHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHH
Q 020060 42 SDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNC 121 (331)
Q Consensus 42 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (331)
+++|+..+...... .| . ...+..+|.++...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+
T Consensus 259 ~~~A~~~~~~~~~~---~~-~-~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 259 LLDAQVLLQESINL---HP-T-PNSYIFLALTLADKENS-QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp HHHHHHHHHHHHHH---CC-C-HHHHHHHHHHTCCSSCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhc---CC-C-chHHHHHHHHHHHhcCH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 35555555554421 22 2 67889999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 122 FNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 122 ~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
|+++++..|++ .++..+|.++...| ++++|+..++++++.+|+++.++..+|.++... |+++
T Consensus 333 ~~~a~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~ 395 (537)
T 3fp2_A 333 FQKAQSLNPENVYPYIQLACLLYKQG--------KFTESEAFFNETKLKFPTLPEVPTFFAEILTDR---------GDFD 395 (537)
T ss_dssp HHHHHHHCTTCSHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---------TCHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh---------CCHH
Confidence 99999999998 89999999999887 499999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhchhcCCChhH------HhhHHHHHHHh----------hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNPDL------YFNCATVNKYL----------ENYERALSGFEASALKDPSLNAT-EEVQMMVN 263 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~------~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~ 263 (331)
+|+..|++++... |.++.. +..+|.++... |++++|+.+|++++..+|++... ..++.++.
T Consensus 396 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 396 TAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999999855 655544 55667899999 99999999999999999999988 99999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHH
Q 020060 264 LLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 264 ~l~~~~~a~~~~~~a~~l~~~ 284 (331)
.+|++++|++.+.++.++.+.
T Consensus 474 ~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 474 QMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHC--
T ss_pred HhccHHHHHHHHHHHHHhCCC
Confidence 999999999999999988654
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.89 E-value=8.1e-22 Score=169.54 Aligned_cols=205 Identities=10% Similarity=0.069 Sum_probs=184.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
.+......++.+|..+...|++ ++|+.+|++++..+|+++.++..+|.++...|++++|+.+|+++++..|.+ .++..
T Consensus 16 ~~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 94 (327)
T 3cv0_A 16 NPYMYHENPMEEGLSMLKLANL-AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 94 (327)
T ss_dssp CGGGGSSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHhccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 4445667788999999999998 999999999999999999999999999999999999999999999999988 88999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHH--------------HH-HHHhhhhhcCCCChhhHHHH
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNL--------------GN-ACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~~~~~~~~~A 202 (331)
+|.++...| ++++|+..++++++.+|.+...+..+ +. ++... |++++|
T Consensus 95 la~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A 157 (327)
T 3cv0_A 95 LAVSHTNEH--------NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAP---------NEYREC 157 (327)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSH---------HHHHHH
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHc---------ccHHHH
Confidence 999999887 49999999999999999999888877 55 56656 999999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
+..++++++.. |.++.++..+|.++...|++++|+.++++++..+|++... ..++.++...|++++|+..+.++.++
T Consensus 158 ~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999955 9999999999999999999999999999999999999888 99999999999999999999998876
Q ss_pred HH
Q 020060 282 AS 283 (331)
Q Consensus 282 ~~ 283 (331)
.+
T Consensus 236 ~~ 237 (327)
T 3cv0_A 236 NP 237 (327)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2e-22 Score=167.43 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=159.4
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHhCChhHHHHHHHHHHhc-------
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-------ADAWLCLGSCIWKKGDLPAAKNCFNLALSK------- 128 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------- 128 (331)
...+++.+|.++...|++ ++|+.++.+++.+.|.. +.++..+|.++...|++++|+.+|++++.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEY-ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CTHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHcccH-HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHH
Confidence 357899999999999998 99999999999998876 799999999999999999999999999994
Q ss_pred -------------------CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhh
Q 020060 129 -------------------GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSF 188 (331)
Q Consensus 129 -------------------~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 188 (331)
+|.. .++..+|.++...| ++++|+.++++++..+|.++.++..+|.++...
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~- 186 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS--------DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKL- 186 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-
Confidence 4444 67888999999887 499999999999999999999999999999999
Q ss_pred hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC------CCCcHH
Q 020060 189 FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD------PSLNAT 255 (331)
Q Consensus 189 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~~~~ 255 (331)
|++++|+..++++++.. |.++.++..+|.++..+|++++|..+|+++++++ |++...
T Consensus 187 --------~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~ 249 (258)
T 3uq3_A 187 --------MSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 249 (258)
T ss_dssp --------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred --------CCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHH
Confidence 99999999999999955 9999999999999999999999999999999999 776654
No 38
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.88 E-value=5.3e-21 Score=178.35 Aligned_cols=221 Identities=14% Similarity=0.091 Sum_probs=206.2
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
..+.+++|+..++..... +....++..+|..+...|++ ++|+..|++++..+|.+..++..++.++...|++++
T Consensus 284 ~~g~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL-----EKSSDLLLCKADTLFVRSRF-IDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp THHHHHHHHHHHHTSTTG-----GGCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred CcchHHHHHHHHHHhhcC-----CchHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHH
Confidence 357788999999988742 46678899999999999998 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 118 AKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 118 A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|+..++++++..|.+ ..+..+|.++...| ++++|+.+|+++++.+|.+..+|..++.+|...
T Consensus 358 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 420 (597)
T 2xpi_A 358 LYLISNDLVDRHPEKAVTWLAVGIYYLCVN--------KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIE--------- 420 (597)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHhhCcccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------
Confidence 999999999999988 88899999999887 499999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhh
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~ 275 (331)
|++++|+..|++++... |.++.++..+|.++...|++++|..+|++++...|++... ..++.++...|++++|++.+
T Consensus 421 g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 498 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF 498 (597)
T ss_dssp TCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999855 9999999999999999999999999999999999999888 99999999999999999999
Q ss_pred hhhhhHHH
Q 020060 276 AKTKRVAS 283 (331)
Q Consensus 276 ~~a~~l~~ 283 (331)
.++.++.+
T Consensus 499 ~~~~~~~~ 506 (597)
T 2xpi_A 499 QNALLLVK 506 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhh
Confidence 99987754
No 39
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4.9e-22 Score=181.64 Aligned_cols=219 Identities=15% Similarity=0.069 Sum_probs=192.7
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
.+++|+..+...... .+ . ..++..+|.++...|++ ++|+.++++++..+|.++.++..+|.++...|++++|+.
T Consensus 252 ~~~~A~~~~~~~l~~---~~-~-~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 252 DPLGAHEDIKKAIEL---FP-R-VNSYIYMALIMADRNDS-TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp CHHHHHHHHHHHHHH---CC-C-HHHHHHHHHHHHTSSCC-TTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred CHHHHHHHHHHHHhh---Cc-c-HHHHHHHHHHHHHCCCH-HHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345555555544321 22 2 77888999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
+|+++++..|.+ .++..+|.++...| ++++|+..++++++..|.++.++..+|.++... |++
T Consensus 326 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~ 388 (514)
T 2gw1_A 326 DFDKAKELDPENIFPYIQLACLAYREN--------KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK---------NDF 388 (514)
T ss_dssp HHHHHHHTCSSCSHHHHHHHHHTTTTT--------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT---------TCH
T ss_pred HHHHHHHhChhhHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC---------CCH
Confidence 999999999988 88889999999887 499999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCChh------HHhhHHHHHHH---hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHH
Q 020060 200 LQSLKAYQNAEKDERMKSNPD------LYFNCATVNKY---LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~ 269 (331)
++|+..|++++... |.++. ++..+|.++.. .|++++|+.+|++++..+|++... ..++.++...|+++
T Consensus 389 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 389 DKALKQYDLAIELE--NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp HHHHHHHHHHHHHH--HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhh--hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 99999999999855 77755 89999999999 999999999999999999999888 99999999999999
Q ss_pred HHHHhhhhhhhHHHH
Q 020060 270 NLLKGHAKTKRVASL 284 (331)
Q Consensus 270 ~a~~~~~~a~~l~~~ 284 (331)
+|+..+.++.++.+.
T Consensus 467 ~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 467 EAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998877553
No 40
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.88 E-value=2.2e-21 Score=152.70 Aligned_cols=175 Identities=16% Similarity=0.132 Sum_probs=165.0
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
+.....+++.+|.++...|++ ++|+..+++++...|.++.++..+|.++...|++++|+.+++++++..|.+ .++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 82 (186)
T 3as5_A 4 DDIRQVYYRDKGISHAKAGRY-SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVL 82 (186)
T ss_dssp CCHHHHHHHHHHHHHHHHTCH-HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 456678899999999999998 999999999999999999999999999999999999999999999999988 889999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|.++...| ++++|+.++++++...|.++.++..+|.++... |++++|+.++++++... |.+
T Consensus 83 a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~ 143 (186)
T 3as5_A 83 GLTYVQVQ--------KYDLAVPLLIKVAEANPINFNVRFRLGVALDNL---------GRFDEAIDSFKIALGLR--PNE 143 (186)
T ss_dssp HHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHhc--------CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcC--ccc
Confidence 99999876 499999999999999999999999999999999 99999999999999955 999
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
+.++..+|.++...|++++|..++++++..+|++..
T Consensus 144 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 144 GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999999999999999999888764
No 41
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.88 E-value=3.7e-21 Score=157.51 Aligned_cols=154 Identities=9% Similarity=0.004 Sum_probs=144.6
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC-Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP-NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
+.++.+++.+|.++...|++++|+.+|+++++++| .+ ..++.+|.++..+| ++++|+.+++++++.+|++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~~~p~~ 75 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--------KYKEAADYFDIAIKKNYNL 75 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTCSH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--------cHHHHHHHHHHHHHhCcch
Confidence 55679999999999999999999999999999997 55 88888999999887 4999999999999999999
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-------hHHhhHHHHHHHhhcHHHHHHHHHHHH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP-------DLYFNCATVNKYLENYERALSGFEASA 246 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al 246 (331)
+.+|..+|.++... |++++|+..|+++++.. |.++ .++.++|.++..+|++++|+.+|++++
T Consensus 76 ~~~~~~l~~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 76 ANAYIGKSAAYRDM---------KNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999 99999999999999955 9998 669999999999999999999999999
Q ss_pred hcCCC--CcHH-HHHHHHHHHHHHH
Q 020060 247 LKDPS--LNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 247 ~~~~~--~~~~-~~l~~~~~~l~~~ 268 (331)
+++|+ +... ..+|.++...|+.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999 8787 9999999999888
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.3e-20 Score=160.23 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=169.7
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHhCChhHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--NPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
+++.++..++.. .+ .....+..++..+...+++ ++|++.+++.+.. +|+++.+++.+|.++...|++++|
T Consensus 49 ~~~~al~~~~~~------~~-~~~~a~~~la~~~~~~~~~-~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 49 KYGVVLDEIKPS------SA-PELQAVRMFAEYLASHSRR-DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp CHHHHHHHSCTT------SC-HHHHHHHHHHHHHHCSTTH-HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHhccc------CC-hhHHHHHHHHHHHcCCCcH-HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 445666666542 22 3566777888888888886 9999999998875 599999999999999999999999
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
+.+|++ |.+ .++..+|.++..+| ++++|++.++++++.+|++.......+.+.... ..|
T Consensus 121 l~~l~~-----~~~~~~~~~l~~~~~~~g--------~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~-------~~~ 180 (291)
T 3mkr_A 121 LRTLHQ-----GDSLECMAMTVQILLKLD--------RLDLARKELKKMQDQDEDATLTQLATAWVSLAA-------GGE 180 (291)
T ss_dssp HHHHTT-----CCSHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------CTT
T ss_pred HHHHhC-----CCCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh-------Cch
Confidence 999988 566 88888999999887 499999999999998888754433333222211 128
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHH-HHhh
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENL-LKGH 275 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a-~~~~ 275 (331)
++++|+..|++++... |.++.+++++|.++..+|++++|...|++++..+|+++.. .+++.++..+|+..++ ...+
T Consensus 181 ~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~ 258 (291)
T 3mkr_A 181 KLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL 258 (291)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999854 9999999999999999999999999999999999999988 8899999999988765 4666
Q ss_pred hhhhhHHH
Q 020060 276 AKTKRVAS 283 (331)
Q Consensus 276 ~~a~~l~~ 283 (331)
.++.++.|
T Consensus 259 ~~~~~~~P 266 (291)
T 3mkr_A 259 SQLKDAHR 266 (291)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhCC
Confidence 77776654
No 43
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=9.9e-21 Score=160.91 Aligned_cols=207 Identities=9% Similarity=0.001 Sum_probs=168.5
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
..++|++.++.+.... ..+..+.+++.+|.++...|++ ++|+..+++ |.++.++..+|.++...|++++|+.
T Consensus 80 ~~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~-~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 80 RRDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNP-DAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp THHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCH-HHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCH-HHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3455666665533110 1245667899999999999997 999999988 8999999999999999999999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.|+++++.+|++ ......+.+....+ .+++++|+.+|+++++.+|+++.+|+++|.++... |++
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~------~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~ 216 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAG------GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ---------GRW 216 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHC------TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT---------TCH
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhC------chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCH
Confidence 999999999986 22222232222222 14799999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 020060 200 LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER-ALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
++|+..|++++... |+++.++.++|.++...|++.+ +..+++++++++|+++.... .....+.++++...|
T Consensus 217 ~eA~~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d---~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 217 EAAEGVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE---YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH---HHHHHHHHHHHHHHc
Confidence 99999999999955 9999999999999999999976 57899999999999986532 345666666666554
No 44
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.8e-21 Score=177.82 Aligned_cols=202 Identities=12% Similarity=0.159 Sum_probs=190.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+.+++.+|.++...|++ ++|+.+|++++..+|. +.++..+|.++...|++++|+.+|++++...|.+ .++..+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 311 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDP-LGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHH
Confidence 56788999999999999998 9999999999999999 9999999999999999999999999999999988 8899999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
.++...| ++++|+..++++++.+|.++.++..+|.++... |++++|+..++++++.. |.++
T Consensus 312 ~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~ 372 (514)
T 2gw1_A 312 QMNFILQ--------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRE---------NKFDDCETLFSEAKRKF--PEAP 372 (514)
T ss_dssp HHHHHTT--------CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT---------TCHHHHHHHHHHHHHHS--TTCS
T ss_pred HHHHHhC--------CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHc--ccCH
Confidence 9999887 499999999999999999999999999999988 99999999999999954 9999
Q ss_pred hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H-HHHHHHHHH---HHHHHHHHHhhhhhhhHHH
Q 020060 220 DLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T-EEVQMMVNL---LDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 220 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~-~~l~~~~~~---l~~~~~a~~~~~~a~~l~~ 283 (331)
.++..+|.++...|++++|+.+|++++...|++.. . ..++.++.. .|++++|+..+.++..+.+
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999998864 5 999999999 9999999999999887643
No 45
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.5e-20 Score=170.39 Aligned_cols=209 Identities=13% Similarity=0.030 Sum_probs=169.6
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL---------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP 130 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 130 (331)
+...+.++..+|.++...|++ ++|+++|++++++ +|....+|.++|.+|..+|++++|+.+|++++++.+
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~-~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQN-EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 345678889999999999998 9999999999986 567788999999999999999999999999998743
Q ss_pred --------Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 131 --------NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 131 --------~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
.. .++..+|.++..+|. +++++|+.+|+++++++|+++.++..+|.++.... ..++.++
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~------~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~------~~~~~~~ 193 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGG------NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD------NWPPSQN 193 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCT------THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH------HSCCCCC
T ss_pred hcccccchhhHHHHHHHHHHHHHHcc------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------CchHHHH
Confidence 22 567778888887763 57999999999999999999999999998876540 0145577
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
|+..|+++++.+ |.++.++.++|..+.. .|++++|..+|++++..+|++... ..+|.++...|++++|+..+.
T Consensus 194 al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 194 AIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp THHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 888888888855 8888888888876654 467788888888888888888887 888888888888888888888
Q ss_pred hhhhHHH
Q 020060 277 KTKRVAS 283 (331)
Q Consensus 277 ~a~~l~~ 283 (331)
++.++.|
T Consensus 272 ~al~~~p 278 (472)
T 4g1t_A 272 KALEYIP 278 (472)
T ss_dssp HHHHHST
T ss_pred HHHHhCC
Confidence 8876643
No 46
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=3.2e-21 Score=177.41 Aligned_cols=223 Identities=11% Similarity=0.105 Sum_probs=195.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCc---chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChh
Q 020060 40 NESDLALRLLGSVPPEQRKSP---TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLP 116 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 116 (331)
+.+++|+..+..........+ ...+.+++.+|.++...|++ ++|+.+|++++..+|+ +.++..+|.++...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNL-LDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccH-HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 466777777766543211111 12356788999999999997 9999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCC
Q 020060 117 AAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWD 195 (331)
Q Consensus 117 ~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 195 (331)
+|+.+|+++++..|++ .++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-------- 357 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ--------DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ-------- 357 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------
Confidence 9999999999999998 88999999999887 499999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-------HHHHHHHHHH---
Q 020060 196 HSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-------EEVQMMVNLL--- 265 (331)
Q Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------~~l~~~~~~l--- 265 (331)
|++++|+..++++++.. |.++.++..+|.++...|++++|+.+|++++...|++... ..++.++...
T Consensus 358 -g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 434 (537)
T 3fp2_A 358 -GKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434 (537)
T ss_dssp -TCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC
T ss_pred -CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999955 9999999999999999999999999999999988765432 4567888888
Q ss_pred -------HHHHHHHHhhhhhhhHHH
Q 020060 266 -------DKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 266 -------~~~~~a~~~~~~a~~l~~ 283 (331)
|++++|+..+.++.++.+
T Consensus 435 ~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 435 DPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHCT
T ss_pred cchhhhHhHHHHHHHHHHHHHHhCC
Confidence 999999999999887654
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=1.3e-20 Score=156.31 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=164.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHh--cCCCh-HHHhhH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALS--KGPNK-KILCQL 138 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~-~~~~~l 138 (331)
....+++.+|.++...|++ ++|+.+|++++...|.+..++..+|.++...|++++|+.+|++++. ..|.. .++..+
T Consensus 69 ~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 147 (252)
T 2ho1_A 69 SSADAHAALAVVFQTEMEP-KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence 3467899999999999998 9999999999999999999999999999999999999999999999 77777 888999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN 218 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 218 (331)
|.++...| ++++|+.+++++++..|.++.++..+|.++... |++++|+..+++++... |.+
T Consensus 148 a~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~--~~~ 208 (252)
T 2ho1_A 148 GLVSLQMK--------KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE---------REYVPARQYYDLFAQGG--GQN 208 (252)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTS--CCC
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--cCc
Confidence 99999887 499999999999999999999999999999999 99999999999999955 999
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
+..+..++.++...|++++|..++++++..+|++...
T Consensus 209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 9999999999999999999999999999999998764
No 48
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=6.5e-22 Score=151.31 Aligned_cols=146 Identities=8% Similarity=0.014 Sum_probs=124.8
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~ 147 (331)
.+|.++...|++ ++|+..+++++..+|+.+.+++.+|.+|...|++++|+.+|+++++++|++ .+|..+|.++..+|
T Consensus 2 ~LG~~~~~~~~~-e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~- 79 (150)
T 4ga2_A 2 PLGSMRRSKADV-ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE- 79 (150)
T ss_dssp -----CCCHHHH-HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred HhHHHHHHcChH-HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Confidence 368888889996 999999999999999999999999999999999999999999999999988 88999999999887
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHH-HHHHHhchhcCCChhHHhhHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKA-YQNAEKDERMKSNPDLYFNCA 226 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al~~~~~~~~~~~~~~la 226 (331)
++++|+.+|+++++++|+++.+|+.+|.++... |++++|... ++++++.. |+++.++..++
T Consensus 80 -------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------~~~~~aa~~~~~~al~l~--P~~~~~~~l~~ 141 (150)
T 4ga2_A 80 -------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKN---------DVTDGRAKYWVERAAKLF--PGSPAVYKLKE 141 (150)
T ss_dssp -------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------CSSSSHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 499999999999999999999999999999888 888777665 58899855 99999998888
Q ss_pred HHHHHhhc
Q 020060 227 TVNKYLEN 234 (331)
Q Consensus 227 ~~~~~~g~ 234 (331)
.++...|+
T Consensus 142 ~ll~~~G~ 149 (150)
T 4ga2_A 142 QLLDCEGE 149 (150)
T ss_dssp HHHHTCCC
T ss_pred HHHHHhCc
Confidence 88887764
No 49
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.1e-21 Score=183.79 Aligned_cols=180 Identities=11% Similarity=0.005 Sum_probs=163.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHH--------hcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAV--------KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KI 134 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 134 (331)
...++..| ...|++ ++|+..|++++ ..+|++..+++.+|.++...|++++|+..|+++++.+|++ .+
T Consensus 394 ~~a~~~~a---~~~~~~-~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a 469 (681)
T 2pzi_A 394 VAASVLQA---TVLSQP-VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL 469 (681)
T ss_dssp TTHHHHHH---TTTCCH-HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHhhc---ccccCH-HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH
Confidence 33444555 678997 99999999999 8999999999999999999999999999999999999999 99
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
++.+|.++..+| ++++|+..|+++++++|+++.+|+++|.++... |++++ +..|+++++.+
T Consensus 470 ~~~lg~~~~~~g--------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~---------g~~~~-~~~~~~al~~~- 530 (681)
T 2pzi_A 470 VWYRAVAELLTG--------DYDSATKHFTEVLDTFPGELAPKLALAATAELA---------GNTDE-HKFYQTVWSTN- 530 (681)
T ss_dssp HHHHHHHHHHHT--------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH---------TCCCT-TCHHHHHHHHC-
T ss_pred HHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---------CChHH-HHHHHHHHHhC-
Confidence 999999999887 499999999999999999999999999999999 99999 99999999955
Q ss_pred cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 215 MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
|.++.+++++|.++..+|++++|+.+|+++++++|++..+ .+++.++...+.
T Consensus 531 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 531 -DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred -CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999999888 888888766443
No 50
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.86 E-value=1.4e-20 Score=170.88 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=173.3
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh-hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHH
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDL-PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
+.+ ++++..+.+.....|..+.+++.+|.++...|++ ++|+.+|+++++++|++ .++..+|.++...| +
T Consensus 82 ~~~-~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~ 152 (474)
T 4abn_A 82 EEM-EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--------D 152 (474)
T ss_dssp HHH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------C
T ss_pred HHH-HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------C
Confidence 344 7888899999999999999999999999999999 99999999999999998 99999999999887 4
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh---
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL--- 232 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--- 232 (331)
+++|+.+|+++++++|+ ..++..+|.++............|++++|+..|+++++.. |.++.+|+++|.++..+
T Consensus 153 ~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 7999999999874200000001189999999999999955 99999999999999999
Q ss_pred -----hcHHHHHHHHHHHHhcCC---CCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 233 -----ENYERALSGFEASALKDP---SLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 233 -----g~~~~A~~~~~~al~~~~---~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|++++|+.+|++++.++| ++... ..+|.++..+|++++|+..+.++.++.+
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999 88888 9999999999999999999999987754
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=4.2e-20 Score=150.08 Aligned_cols=174 Identities=11% Similarity=0.057 Sum_probs=162.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-CChhHHHHHHHHHHh--cCCCh-HHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-GDLPAAKNCFNLALS--KGPNK-KILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~--~~~~~-~~~~~ 137 (331)
....+++.+|.++...|++ ++|+.+|++++...|.++.++..+|.++... |++++|+.+++++++ ..|.. ..+..
T Consensus 40 ~~~~~~~~l~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 118 (225)
T 2vq2_A 40 KNELAWLVRAEIYQYLKVN-DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118 (225)
T ss_dssp TCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHH
T ss_pred cchHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHH
Confidence 3467889999999999998 9999999999999999999999999999999 999999999999999 55665 78899
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK- 216 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 216 (331)
+|.++...| ++++|+.+++++++..|.++.++..+|.++... |++++|+..+++++... |
T Consensus 119 l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~--~~ 179 (225)
T 2vq2_A 119 KGICSAKQG--------QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA---------GQLGDADYYFKKYQSRV--EV 179 (225)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHH--CS
T ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CC
Confidence 999999887 499999999999999999999999999999999 99999999999999955 9
Q ss_pred CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 217 SNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.++..+..++.++...|++++|..+++.+...+|+++..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999998865
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.2e-20 Score=168.23 Aligned_cols=223 Identities=12% Similarity=0.019 Sum_probs=177.3
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhc--ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH---hCC
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDV--VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK---KGD 114 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~g~ 114 (331)
..+++++.+....... .....+.++..+|.++.. .++| ++|+.+|++++.++|+++.++..+|.++.. .++
T Consensus 115 ~~~~ka~~i~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~y-~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~ 190 (472)
T 4g1t_A 115 IYVDKVKHVCEKFSSP---YRIESPELDCEEGWTRLKCGGNQN-ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP 190 (472)
T ss_dssp HHHHHHHHHHHHSCCS---SCCCCHHHHHHHHHHHHHHCTTHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhHhcccc---cchhhHHHHHHHHHHHHHHccccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH
Confidence 4455566665555432 334556777788876655 4577 999999999999999999999999988654 577
Q ss_pred hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 115 LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
+++|+..|+++++++|++ .++..+|..+..++. ..+++++|..++++++..+|.++.++..+|.+|...
T Consensus 191 ~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~----~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~------ 260 (472)
T 4g1t_A 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE----EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK------ 260 (472)
T ss_dssp CCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc------
Confidence 889999999999999998 778888888777654 445788999999999999999999999999999988
Q ss_pred CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-------------------hcHHHHHHHHHHHHhcCCCCcH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-------------------ENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|++++|+..|+++++.. |+++.++.++|.+|... +.+++|+.+|++++.++|.+..
T Consensus 261 ---~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 335 (472)
T 4g1t_A 261 ---DEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR 335 (472)
T ss_dssp ---TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred ---CchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh
Confidence 99999999999999854 99998888888887543 3467788888888888888877
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
. ..+|.++...|++++|+..|.+++.+
T Consensus 336 ~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 336 VCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 6 88888888888888888888877654
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=6e-20 Score=157.45 Aligned_cols=204 Identities=10% Similarity=0.047 Sum_probs=177.1
Q ss_pred chhhHHHHHhhhhhhc-------cccc------HHHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 61 TQRATYEYLKGKILDV-------VPEY------RKDAEDHLSKAVK-LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~-------~~~~------~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
+..+.+|+.+|..+.. .|++ .++|+..|++++. ++|++..+|..+|.++...|++++|...|++++
T Consensus 47 p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 126 (308)
T 2ond_A 47 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 126 (308)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3556788888888763 4662 1789999999999 799999999999999999999999999999999
Q ss_pred hcCCCh-H-HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh-hhhhcCCCChhhHHHHH
Q 020060 127 SKGPNK-K-ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT-SFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 127 ~~~~~~-~-~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~A~ 203 (331)
++.|.+ . +|..+|.++...| ++++|...|+++++..|....+|...+.+... . |++++|+
T Consensus 127 ~~~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~---------~~~~~A~ 189 (308)
T 2ond_A 127 AIEDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---------KDKSVAF 189 (308)
T ss_dssp TSSSSCTHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTS---------CCHHHHH
T ss_pred hccccCccHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc---------CCHHHHH
Confidence 999987 5 8999999998775 59999999999999999988888766665432 5 8999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc---CCC-CcHH-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK---DPS-LNAT-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~~-~~~~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
..|+++++.. |+++.+|..+|.++...|++++|...|++++.. .|+ .... ..++......|+.+.+...+.++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999965 999999999999999999999999999999996 554 3444 77788888899999999888888
Q ss_pred hhHHH
Q 020060 279 KRVAS 283 (331)
Q Consensus 279 ~~l~~ 283 (331)
.++.|
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87765
No 54
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.85 E-value=1.3e-19 Score=148.16 Aligned_cols=178 Identities=10% Similarity=0.068 Sum_probs=151.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~ 136 (331)
+..++.+|..+...|+| ++|+..|++++...|.. ..+++.+|.+|...|++++|+..|+++++..|++ .+++
T Consensus 4 ~~~~~~~a~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNW-RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56788999999999998 99999999999998876 4799999999999999999999999999999988 3788
Q ss_pred hHHHHHHHhccCc----------hhHHHHHHHHHHHHHHHhcCCCCCchhH-----------------HHHHHHHHhhhh
Q 020060 137 QLSMLERSMAQGS----------ENQAEIVEESIQHAKEAITLDVKDGNSW-----------------YNLGNACLTSFF 189 (331)
Q Consensus 137 ~l~~~~~~~g~~~----------~~~~~~~~~A~~~~~~al~~~p~~~~~~-----------------~~l~~~~~~~~~ 189 (331)
.+|.++..+|... ....+++++|+..|+++++.+|+++.++ ..+|.+|...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~-- 160 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER-- 160 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 9999988643110 0012579999999999999999998765 4677788877
Q ss_pred hcCCCChhhHHHHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 190 VTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 190 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
|++++|+..|+++++.. |+++ .+++.+|.++..+|++++|+..++++....|++.
T Consensus 161 -------~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 161 -------GAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------TCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------CcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 99999999999999844 7776 6689999999999999999999998888888754
No 55
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=7.6e-21 Score=161.81 Aligned_cols=202 Identities=12% Similarity=0.116 Sum_probs=161.7
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS------LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----- 132 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 132 (331)
...+...|.++...|+| ++|+.+|.+++.+.+. .+.++.++|.+|...|++++|+.+|++++++.|..
T Consensus 37 ~~~~~~a~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKEL-NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHHTTCT-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 44455567888999998 9999999999998532 26789999999999999999999999999987643
Q ss_pred --HHHhhHHHHHHHh-ccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 --KILCQLSMLERSM-AQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 --~~~~~l~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.++.++|.++... |+ +++|+.+|++++++.|.. ..++.++|.++... |++++|+
T Consensus 116 ~a~~~~~lg~~~~~~lg~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~ 178 (292)
T 1qqe_A 116 GANFKFELGEILENDLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD---------GQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh---------CCHHHHH
Confidence 4788899999984 74 999999999999998765 45788999999999 9999999
Q ss_pred HHHHHHHhchhcCCChh-------HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH------HHHHHHHH--HHHHH
Q 020060 204 KAYQNAEKDERMKSNPD-------LYFNCATVNKYLENYERALSGFEASALKDPSLNAT------EEVQMMVN--LLDKI 268 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~l~~~~~--~l~~~ 268 (331)
.+|++++... |.++. .+.++|.++..+|++++|+.+|++++.++|++... ..++..+. ..+++
T Consensus 179 ~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 179 DIYSKLIKSS--MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHTT--SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHH--hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999955 66543 57899999999999999999999999999987653 22233332 34568
Q ss_pred HHHHHhhhhhhhHHHHH
Q 020060 269 ENLLKGHAKTKRVASLA 285 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~ 285 (331)
.+|++.|.++.++.+..
T Consensus 257 ~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHhccCCccHHHH
Confidence 88888888887766654
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=160.29 Aligned_cols=207 Identities=16% Similarity=0.086 Sum_probs=179.7
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 129 (331)
+.+..+.++..+|.++...|++ ++|+.+|++++.+ .|..+.++..+|.++...|++++|+.+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRY-EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5678889999999999999998 9999999999995 66778899999999999999999999999999873
Q ss_pred -------CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC--------CCCchhHHHHHHHHHhhhhhcCC
Q 020060 130 -------PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD--------VKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 130 -------~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
|.. .++..+|.++...| ++++|+.+++++++.. |....++..+|.++...
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------ 166 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRG--------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ------ 166 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT------
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcC--------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHc------
Confidence 333 78888999999887 4999999999999874 56677899999999988
Q ss_pred CChhhHHHHHHHHHHHHhc------hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC------------------
Q 020060 194 WDHSKLLQSLKAYQNAEKD------ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD------------------ 249 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------ 249 (331)
|++++|+.++++++.. ...|....++..+|.++...|++++|..+|++++...
T Consensus 167 ---~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 167 ---GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 9999999999999984 1135556779999999999999999999999999752
Q ss_pred -------------------------------CCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 250 -------------------------------PSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 250 -------------------------------~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
|..... ..++.++...|++++|++.+.++.++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 333344 8899999999999999999999988753
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=4.9e-20 Score=154.58 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=145.7
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLN----PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
..++......|++ ++|+..|+++++.. |..+.++..+|.++...|++++|+.+|+++++.+|.+ .++..+|.++
T Consensus 9 ~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 9 EVLAVPLQPTLQQ-EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL 87 (275)
T ss_dssp GGSCCCCCCCHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred cceeeccCccchH-HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3456667778998 99999999999984 4568899999999999999999999999999999998 8999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
...| ++++|+.+++++++.+|+++.++..+|.++... |++++|+..|+++++.. |.++...
T Consensus 88 ~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~--~~~~~~~ 148 (275)
T 1xnf_A 88 TQAG--------NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG---------GRDKLAQDDLLAFYQDD--PNDPFRS 148 (275)
T ss_dssp HHTT--------CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHcc--------CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhC--CCChHHH
Confidence 9887 499999999999999999999999999999999 99999999999999955 8888766
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
...+.+ ...|++++|+..|.+++...|.+
T Consensus 149 ~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 149 LWLYLA-EQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHH-HHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHhcCCcc
Confidence 655544 66799999999998888877765
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.84 E-value=5.8e-19 Score=148.42 Aligned_cols=189 Identities=15% Similarity=0.173 Sum_probs=96.4
Q ss_pred HHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHh
Q 020060 65 TYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILC 136 (331)
Q Consensus 65 ~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~ 136 (331)
.+++.+|.++.. .+++ ++|+.+|+++++.. ++.+++.+|.+|.. .+++++|+.+|+++++.. ...++.
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~-~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 114 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNL-KKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCA 114 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCH-HHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHH
Confidence 444555555555 5554 55555555555543 45555555555555 555555555555555442 124455
Q ss_pred hHHHHHHH----hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----hhhhcCCCChhhHHHHHHHHHH
Q 020060 137 QLSMLERS----MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT----SFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 137 ~l~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
.+|.++.. .+ ++++|+.+++++++.. ++.++..+|.+|.. . +++++|+.+|++
T Consensus 115 ~lg~~~~~~~~~~~--------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~---------~~~~~A~~~~~~ 175 (273)
T 1ouv_A 115 SLGGIYHDGKVVTR--------DFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTP---------KDLKKALASYDK 175 (273)
T ss_dssp HHHHHHHHCSSSCC--------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSC---------CCHHHHHHHHHH
T ss_pred HHHHHHHcCCCccc--------CHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCC---------CCHHHHHHHHHH
Confidence 55555554 33 2555555555555543 34455555555554 3 555555555555
Q ss_pred HHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhh
Q 020060 209 AEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTK 279 (331)
Q Consensus 209 al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~ 279 (331)
+++ ..++.+++++|.++.. .+++++|+.+|+++++..| ... ..++.++.. .+++++|++.+.++.
T Consensus 176 a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 176 ACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGC 249 (273)
T ss_dssp HHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHH
T ss_pred HHH----CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 554 2344555555555555 5555555555555555443 233 555555554 555555555555555
Q ss_pred hHH
Q 020060 280 RVA 282 (331)
Q Consensus 280 ~l~ 282 (331)
++.
T Consensus 250 ~~~ 252 (273)
T 1ouv_A 250 KLG 252 (273)
T ss_dssp HHT
T ss_pred HcC
Confidence 443
No 59
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.83 E-value=2.6e-21 Score=147.97 Aligned_cols=142 Identities=13% Similarity=0.025 Sum_probs=125.9
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
.||.++...|++++|+..+++++...|++ ..++.+|.++..+| ++++|+.+|+++++++|+++.+|..+|.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--------~~~~A~~~~~~al~~~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--------EYDLAKKYICTYINVQERDPKAHRFLGL 73 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 47889999999999999999999999988 78899999999887 4999999999999999999999999999
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHH-HHHHHhcCCCCcHH-HHHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSG-FEASALKDPSLNAT-EEVQM 260 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~-~~l~~ 260 (331)
+|... |++++|+.+|+++++.+ |+++.+++++|.++...|++++|... ++++++++|+++.. ...+.
T Consensus 74 ~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 74 LYELE---------ENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHc---------CchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 99999 99999999999999965 99999999999999999999887765 59999999999987 55555
Q ss_pred HHHH
Q 020060 261 MVNL 264 (331)
Q Consensus 261 ~~~~ 264 (331)
++..
T Consensus 143 ll~~ 146 (150)
T 4ga2_A 143 LLDC 146 (150)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.83 E-value=3.7e-19 Score=149.65 Aligned_cols=193 Identities=13% Similarity=0.085 Sum_probs=174.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHhh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILCQ 137 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 137 (331)
..+.+++.+|.++...|++ ++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.. ...+++.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~ 79 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDF-TQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCHL 79 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCH-HHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHHH
Confidence 4567889999999999997 999999999999 7889999999999999 999999999999999986 3488999
Q ss_pred HHHHHHH----hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh----hhhhcCCCChhhHHHHHHHHHHH
Q 020060 138 LSMLERS----MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT----SFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 138 l~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
+|.++.. .+ ++++|+.+|+++++.+ ++.+++.+|.+|.. . +++++|+.+|+++
T Consensus 80 lg~~~~~g~~~~~--------~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~---------~~~~~A~~~~~~a 140 (273)
T 1ouv_A 80 LGNLYYSGQGVSQ--------NTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVT---------RDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHTSSSCC--------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSC---------CCHHHHHHHHHHH
T ss_pred HHHHHhCCCCccc--------CHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcc---------cCHHHHHHHHHHH
Confidence 9999998 76 4999999999999874 88999999999999 8 9999999999999
Q ss_pred HhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhh
Q 020060 210 EKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKR 280 (331)
Q Consensus 210 l~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~ 280 (331)
++ ..++.+++++|.++.. .+++++|+.+|+++++.. +... ..++.++.. .+++++|+..+.++.+
T Consensus 141 ~~----~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred Hh----cCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 98 4478899999999999 999999999999999874 4555 899999999 9999999999999886
Q ss_pred HHH
Q 020060 281 VAS 283 (331)
Q Consensus 281 l~~ 283 (331)
..+
T Consensus 215 ~~~ 217 (273)
T 1ouv_A 215 LEN 217 (273)
T ss_dssp TTC
T ss_pred CCC
Confidence 643
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.82 E-value=1.2e-19 Score=146.51 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=146.2
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh----------------HHHHHHHhccCchhHHHHHHHHH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ----------------LSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~----------------l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
.++.+...|..+...|++++|+.+|+++++.+|++ .+++. +|.++...| ++++|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~ 74 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--------NYDKAY 74 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--------CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--------CHHHHH
Confidence 46788999999999999999999999999999998 88888 999999887 499999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc--HHHH
Q 020060 161 QHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN--YERA 238 (331)
Q Consensus 161 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~--~~~A 238 (331)
..|+++++++|+++.+|..+|.++... |++++|+..|+++++.+ |+++.+++++|.+|...|+ ...+
T Consensus 75 ~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 75 LFYKELLQKAPNNVDCLEACAEMQVCR---------GQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999 99999999999999965 9999999999999987765 4567
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 239 LSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 239 ~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
...|.+++...|........|.++..+|++++|+..+.++.++.|.
T Consensus 144 ~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 144 ETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 7788887654433222377888899999999999999999987653
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.82 E-value=7.6e-19 Score=146.77 Aligned_cols=173 Identities=12% Similarity=0.041 Sum_probs=153.0
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 92 VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
..+.|.++..++.+|..++..|++++|+..|+++++..|++ .+++.+|.++..+| ++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~~l 79 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--------EYLLAASEYERFI 79 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--------cHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999876 68899999999887 4999999999999
Q ss_pred cCCCCC---chhHHHHHHHHHh--------hhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH--------------
Q 020060 168 TLDVKD---GNSWYNLGNACLT--------SFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-------------- 222 (331)
Q Consensus 168 ~~~p~~---~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------------- 222 (331)
+..|++ +.+++.+|.++.. . |++++|+..|+++++.. |+++.+.
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~---------~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQ---------TDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLA 148 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCC---------HHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccc---------hhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHH
Confidence 998865 5689999999998 7 99999999999999954 8887665
Q ss_pred ---hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHH----------HHHHHHHHhhhhhhhHHH
Q 020060 223 ---FNCATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLL----------DKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 223 ---~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l----------~~~~~a~~~~~~a~~l~~ 283 (331)
+.+|.+|...|++++|+..|++++...|++.. . ..++.++..+ |++++|+..+.++.+..|
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 88999999999999999999999999998543 4 8889999877 889999998888876543
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=164.00 Aligned_cols=214 Identities=17% Similarity=0.181 Sum_probs=168.1
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++...+.++..+|.++...|++ ++|+.++++++.+ .|..+.++..+|.++...|++++|+.++++++++.|..
T Consensus 42 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 120 (406)
T 3sf4_A 42 DLKTLSAIYSQLGNAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 4445578899999999999998 9999999999887 34557899999999999999999999999999887653
Q ss_pred -------HHHhhHHHHHHHhccC------------chhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhh
Q 020060 133 -------KILCQLSMLERSMAQG------------SENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~------------~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 187 (331)
.++..+|.++...|+. .......+++|+.++.+++.+ .|....++..+|.++...
T Consensus 121 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 4788899999877520 001111289999999998876 334456788899999988
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP------DLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT 255 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~ 255 (331)
|++++|+.++++++... +... .++.++|.++...|++++|+.+|++++.+.|.. ...
T Consensus 201 ---------g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 269 (406)
T 3sf4_A 201 ---------GNFRDAVIAHEQRLLIA--KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 269 (406)
T ss_dssp ---------TBHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---------cCHHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHH
Confidence 99999999999998743 3333 268888999999999999999999888876654 233
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..++.++...|++++|+..+.++..+.+.
T Consensus 270 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 270 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 67788888888888888888877766443
No 64
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=2.4e-20 Score=165.86 Aligned_cols=215 Identities=14% Similarity=0.147 Sum_probs=176.9
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC---
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--- 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 129 (331)
++...+.+++.+|.++...|++ ++|+.+|++++.+ .|....++..+|.+|...|++++|+.+|++++++.
T Consensus 81 ~~~~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 159 (411)
T 4a1s_A 81 DLRTLSAIYSQLGNAYFYLGDY-NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL 159 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4445567899999999999998 9999999999988 56778899999999999999999999999999884
Q ss_pred ---CCh-HHHhhHHHHHHHhcc---------CchhHHHHHHHHHHHHHHHhcCC------CCCchhHHHHHHHHHhhhhh
Q 020060 130 ---PNK-KILCQLSMLERSMAQ---------GSENQAEIVEESIQHAKEAITLD------VKDGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 130 ---~~~-~~~~~l~~~~~~~g~---------~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~~~~ 190 (331)
+.. .++..+|.++...|+ ........+++|+.++++++++. +....++..+|.++...
T Consensus 160 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--- 236 (411)
T 4a1s_A 160 GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLL--- 236 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---
T ss_pred hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---
Confidence 223 688889999997752 01111122999999999998764 33455889999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCCh------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH-HH
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNP------DLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT-EE 257 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~-~~ 257 (331)
|++++|+.++++++... +... .++.++|.++..+|++++|+.+|++++.+.+.. ... ..
T Consensus 237 ------g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 237 ------GDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp ------TCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------CChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999854 4333 378999999999999999999999999987754 233 78
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 258 VQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 258 l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
++.++...|++++|+..+.++..+.+..
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 8999999999999999999998876544
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.82 E-value=1.6e-19 Score=159.40 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=179.9
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHhC
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LADAWLCLGSCIWKKG 113 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~g 113 (331)
.+.+++.++...+ ++...+.+++.+|.++...|++ ++|+.++.+++++.+. .+.++..+|.+|...|
T Consensus 125 ~~~~al~~~~~~~-----~~~~~a~~~~~lg~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 198 (383)
T 3ulq_A 125 FFKKAESKLIFVK-----DRIEKAEFFFKMSESYYYMKQT-YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK 198 (383)
T ss_dssp HHHHHHTTGGGCC-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc
Confidence 3444444444443 4566789999999999999998 9999999999998443 3568999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-----CC-CCCchhHHHH
Q 020060 114 DLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-----LD-VKDGNSWYNL 180 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~~l 180 (331)
++++|+.+|++++++.+.. .++.++|.++..+| ++++|+.+++++++ .+ |..+.++.++
T Consensus 199 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 199 QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--------QYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 9999999999999886433 47889999999887 49999999999999 56 7788899999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh---hHHhhHHHHHHHhhc---HHHHHHHHHHHHhcCCCCcH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP---DLYFNCATVNKYLEN---YERALSGFEASALKDPSLNA 254 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 254 (331)
|.++... |++++|+.++++++.......++ ..+..+|.++...|+ +.+|+.++++. ...|....
T Consensus 271 ~~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~ 340 (383)
T 3ulq_A 271 TQIHYKL---------GKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLED 340 (383)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHH
Confidence 9999999 99999999999999854222333 336789999999999 88888888876 22233333
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
. ..+|.++...|++++|...+.++..+...+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 4 889999999999999999999999876543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=1.2e-18 Score=149.29 Aligned_cols=181 Identities=14% Similarity=0.119 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCCh-------hHHHHHHHHHHh-cCCCh-HHHhhHHHHHHHh
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWK-------KGDL-------PAAKNCFNLALS-KGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~-~~~~~l~~~~~~~ 145 (331)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++ .+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 679999999999999999999999999874 5886 999999999999 79988 7999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCch-hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDGN-SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
| ++++|...|+++++..|.++. +|..+|.++... |++++|+..|+++++.. |.+..+|..
T Consensus 113 ~--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~a~~~~--p~~~~~~~~ 173 (308)
T 2ond_A 113 M--------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA---------EGIKSGRMIFKKAREDA--RTRHHVYVT 173 (308)
T ss_dssp T--------CHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHTST--TCCTHHHHH
T ss_pred C--------CHHHHHHHHHHHHhccccCccHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 7 499999999999999999987 999999999988 99999999999999955 888888877
Q ss_pred HHHHHHH-hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 225 CATVNKY-LENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 225 la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.+.+... .|++++|...|+++++.+|++... ..++.++..+|++++|...|.++...
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7766543 799999999999999999999888 99999999999999999999988763
No 67
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.81 E-value=6.6e-20 Score=143.99 Aligned_cols=164 Identities=10% Similarity=-0.009 Sum_probs=141.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...++.+|..+...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| + ..+..++.+.
T Consensus 6 ~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEH-AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp CTTHHHHHHHHHHTTCH-HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 34577889999999998 9999999999999999999999999999999999999999999999999 6 4433344332
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC--hh
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN--PD 220 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~ 220 (331)
.... ....+|+..++++++.+|+++.+++.+|.++... |++++|+..|+++++.. |.. +.
T Consensus 84 ~~~~-------~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~--p~~~~~~ 145 (176)
T 2r5s_A 84 LHQQ-------AAESPELKRLEQELAANPDNFELACELAVQYNQV---------GRDEEALELLWNILKVN--LGAQDGE 145 (176)
T ss_dssp HHHH-------HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTTC--TTTTTTH
T ss_pred HHhh-------cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHhC--cccChHH
Confidence 2110 1234579999999999999999999999999999 99999999999999955 765 66
Q ss_pred HHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 221 LYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
++.++|.++..+|+.++|+..|++++.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 899999999999999999999999875
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.81 E-value=9.3e-19 Score=137.51 Aligned_cols=167 Identities=11% Similarity=0.089 Sum_probs=157.3
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
...++..+|.++...|++++|+..|+++++..|.+ .++..+|.++...| ++++|+.+++++++..|.++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~ 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG--------AVDRGTELLERSLADAPDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhcCCCCHHH
Confidence 36788999999999999999999999999999988 88999999999887 4999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT- 255 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~- 255 (331)
+..+|.++... |++++|+..+++++... |.++.++..+|.++...|++++|..+|++++...|++...
T Consensus 79 ~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 147 (186)
T 3as5_A 79 ATVLGLTYVQV---------QKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVH 147 (186)
T ss_dssp HHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHh---------cCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999 99999999999999954 9999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 256 EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
..++.++...|++++|...+.++..+.+
T Consensus 148 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 148 RAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987764
No 69
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=158.30 Aligned_cols=221 Identities=15% Similarity=0.176 Sum_probs=185.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhC
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKG 113 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g 113 (331)
..+++++....... .++..+.++..+|.++...|++ ++|+.++.+++.+.|.. +.++..+|.+|...|
T Consensus 68 ~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 141 (406)
T 3sf4_A 68 EYHHHDLTLARTIG-----DQLGEAKASGNLGNTLKVLGNF-DEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141 (406)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC
Confidence 44455555555443 4567788999999999999998 99999999999987643 558999999999999
Q ss_pred C--------------------hhHHHHHHHHHHhcCC------Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 114 D--------------------LPAAKNCFNLALSKGP------NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 114 ~--------------------~~~A~~~~~~al~~~~------~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
+ +++|+.++.+++.+.+ .. .++..+|.++..+| ++++|+.+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~a 213 (406)
T 3sf4_A 142 KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG--------NFRDAVIAHEQR 213 (406)
T ss_dssp HTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------BHHHHHHHHHHH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHH
Confidence 9 9999999999987732 11 57888999999887 499999999999
Q ss_pred hcCCCCCch------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC------hhHHhhHHHHHHHhhc
Q 020060 167 ITLDVKDGN------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN------PDLYFNCATVNKYLEN 234 (331)
Q Consensus 167 l~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~la~~~~~~g~ 234 (331)
+++.|..+. ++..+|.++... |++++|+.++++++... +.. ..++.++|.++...|+
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~ 282 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFL---------GEFETASEYYKKTLLLA--RQLKDRAVEAQSCYSLGNTYTLLQD 282 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHHH--HhCcCchHHHHHHHHHHHHHHHhCc
Confidence 998776655 899999999999 99999999999999854 433 5678999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC------cHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Q 020060 235 YERALSGFEASALKDPSL------NAT-EEVQMMVNLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 235 ~~~A~~~~~~al~~~~~~------~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
+++|..+|++++.+.+.. ... ..++.++...|++++|+..+.++.++.+..
T Consensus 283 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 340 (406)
T 3sf4_A 283 YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999986554 224 889999999999999999999999885543
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.81 E-value=7.1e-20 Score=157.47 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=176.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++...+.++..+|.++...|++ ++|+.++++++.+ .|..+.++..+|.++...|++++|+.++++++++.+..
T Consensus 38 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 116 (338)
T 3ro2_A 38 DLKTLSAIYSQLGNAYFYLHDY-AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 116 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 4445578899999999999998 9999999999887 44557899999999999999999999999999876543
Q ss_pred -------HHHhhHHHHHHHhccC------------chhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhh
Q 020060 133 -------KILCQLSMLERSMAQG------------SENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~------------~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 187 (331)
.++..+|.++...|+. .......+++|+.++++++.. .+....++..+|.++...
T Consensus 117 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 117 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 3778899999877520 011112299999999998875 233456889999999999
Q ss_pred hhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC------cHH-H
Q 020060 188 FFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALKDPSL------NAT-E 256 (331)
Q Consensus 188 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~-~ 256 (331)
|++++|+.++++++.......+ ..++.++|.++...|++++|..++++++.+.+.. ... .
T Consensus 197 ---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 197 ---------GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 9999999999999974311122 2379999999999999999999999999886654 334 7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHh
Q 020060 257 EVQMMVNLLDKIENLLKGHAKTKRVASLAS 286 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~ 286 (331)
.++.++...|++++|+..+.++..+.+...
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 889999999999999999999988766543
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=3.4e-19 Score=149.63 Aligned_cols=224 Identities=19% Similarity=0.195 Sum_probs=162.2
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHH
Q 020060 36 SKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGS 107 (331)
Q Consensus 36 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 107 (331)
......+++++..+...... .++..+.++..+|.++...|++ ++|+.+|++++.+ .|..+.++..+|.
T Consensus 18 ~~A~~~~~~al~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 18 GSAVPLCKQALEDLEKTSGH---DHPDVATMLNILALVYRDQNKY-KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp SSHHHHHHHHHHHHHHHHCS---SSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 34456677777777665432 4467888999999999999998 9999999999987 3666889999999
Q ss_pred HHHHhCChhHHHHHHHHHHhc--------CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------C
Q 020060 108 CIWKKGDLPAAKNCFNLALSK--------GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------D 170 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~--------~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~ 170 (331)
++...|++++|+.+|++++.+ .|.. .++..+|.++..+| ++++|+.+++++++. .
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~ 165 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG--------KAEEVEYYYRRALEIYATRLGPDD 165 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999988 3444 78899999999887 499999999999998 6
Q ss_pred CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-------hcCCChhHHhhHHHHHHHhhc------HHH
Q 020060 171 VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-------RMKSNPDLYFNCATVNKYLEN------YER 237 (331)
Q Consensus 171 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~~~la~~~~~~g~------~~~ 237 (331)
|....++..+|.++... |++++|+.++++++... ..+.....+..++..+...+. +.+
T Consensus 166 ~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (283)
T 3edt_B 166 PNVAKTKNNLASCYLKQ---------GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE 236 (283)
T ss_dssp HHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------
T ss_pred HHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 77788999999999999 99999999999999741 112333444555544443322 223
Q ss_pred HHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 238 ALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
+..+++......|..... ..++.++...|++++|...+.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 237 YGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333222222333333 5566666666666666666665554
No 72
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=3.2e-19 Score=131.98 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=67.8
Q ss_pred hcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Q 020060 93 KLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 171 (331)
.++|+.+.++..+|..|+..|+|++|+.+|+++++++|.+ .++.++|.++..+|+ +++|+..++++++++|
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~~~p 78 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME--------FQRALDDCDTCIRLDS 78 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCT
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc--------HHHHHHHHHHHHHhhh
Confidence 3455555555555666666666666666666666555555 555555555555542 5556666666666566
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
+++.+|+.+|.++..+ |++++|+..|+++++.+ |+++.++.+++.+
T Consensus 79 ~~~~a~~~lg~~~~~~---------~~~~~A~~~~~~al~l~--P~~~~a~~~l~~~ 124 (126)
T 4gco_A 79 KFIKGYIRKAACLVAM---------REWSKAQRAYEDALQVD--PSNEEAREGVRNC 124 (126)
T ss_dssp TCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHC--cCCHHHHHHHHHh
Confidence 5555666666666555 56666666666665533 5555555555544
No 73
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.81 E-value=3e-19 Score=158.78 Aligned_cols=206 Identities=17% Similarity=0.171 Sum_probs=179.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHhCChhHHHHHHHHHHhc------CC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA----DAWLCLGSCIWKKGDLPAAKNCFNLALSK------GP 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~ 130 (331)
+..+..++.+|..+...|+| ++|+.+|+++++..|+++ .++..+|.+|...|++++|+.+|++++++ .|
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDC-RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 46677788999999999998 999999999999999986 58999999999999999999999999987 33
Q ss_pred Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhhhhhcCCCChhh-----
Q 020060 131 NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTSFFVTGSWDHSK----- 198 (331)
Q Consensus 131 ~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~----- 198 (331)
.. .++..+|.++..+| ++++|+.+++++++. .|....++..+|.++... |+
T Consensus 124 ~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~~~ 186 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMG--------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK---------GKHLGQR 186 (411)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc---------Ccccccc
Confidence 33 78889999999887 499999999999987 556677999999999999 99
Q ss_pred ------------HHHHHHHHHHHHhchh----cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H-
Q 020060 199 ------------LLQSLKAYQNAEKDER----MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T- 255 (331)
Q Consensus 199 ------------~~~A~~~~~~al~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~- 255 (331)
+++|+.++++++.... .+....++.++|.++...|++++|+.+|++++.+.+.... .
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 9999999999987421 1233457999999999999999999999999998775443 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 256 EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..++.++...|++++|+..+.++..+.+.
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999887764
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.80 E-value=3.8e-19 Score=168.38 Aligned_cols=155 Identities=9% Similarity=0.000 Sum_probs=143.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+....+++.+|.++...|++ ++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++ .++.+
T Consensus 428 ~~p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 506 (681)
T 2pzi_A 428 DFSESVELPLMEVRALLDLGDV-AKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA 506 (681)
T ss_dssp CCTTCSHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred ccccchhHHHHHHHHHHhcCCH-HHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 3356678899999999999998 999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++..+| ++++ +..|+++++++|+++.+|+++|.++... |++++|+..|+++++.+ |.
T Consensus 507 lg~~~~~~g--------~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~--P~ 566 (681)
T 2pzi_A 507 LAATAELAG--------NTDE-HKFYQTVWSTNDGVISAAFGLARARSAE---------GDRVGAVRTLDEVPPTS--RH 566 (681)
T ss_dssp HHHHHHHHT--------CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHTSCTTS--TT
T ss_pred HHHHHHHcC--------ChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHc---------CCHHHHHHHHHhhcccC--cc
Confidence 999999887 4999 9999999999999999999999999999 99999999999999965 99
Q ss_pred ChhHHhhHHHHHHHhhc
Q 020060 218 NPDLYFNCATVNKYLEN 234 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~ 234 (331)
++.+++++|.++...++
T Consensus 567 ~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred cHHHHHHHHHHHHccCC
Confidence 99999999999977555
No 75
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=9.6e-19 Score=129.40 Aligned_cols=116 Identities=17% Similarity=0.122 Sum_probs=110.5
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
.|..+..+..+|..++..|+| ++|+.+|+++++++|.++.+|.++|.+|...|++++|+..|+++++++|++ .+++.+
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDY-PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 357788999999999999998 999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
|.++..+| ++++|+..|+++++++|+++.++..++.++
T Consensus 88 g~~~~~~~--------~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 88 AACLVAMR--------EWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHCC--------CHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999987 499999999999999999999999998764
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=1.6e-18 Score=148.88 Aligned_cols=204 Identities=16% Similarity=0.161 Sum_probs=174.0
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC------Ch
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL----ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP------NK 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~ 132 (331)
....++..|..+...|++ ++|+.+|+++++..|++ ..++..+|.++...|++++|+.++++++.+.+ ..
T Consensus 4 ~~~~l~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDC-RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 355678899999999998 99999999999999998 47889999999999999999999999987732 22
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch------hHHHHHHHHHhhhhhcCCCChhh-------
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN------SWYNLGNACLTSFFVTGSWDHSK------- 198 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~~~~~~------- 198 (331)
.++..+|.++...| ++++|+.+++++++..|.... ++..+|.++... |+
T Consensus 83 ~~~~~~l~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~ 145 (338)
T 3ro2_A 83 AKASGNLGNTLKVLG--------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK---------GKSFGCPGP 145 (338)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------HHTSSSSSC
T ss_pred HHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc---------Ccccccchh
Confidence 67888999999887 499999999999988665543 889999999999 99
Q ss_pred -------------HHHHHHHHHHHHhchh----cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH------H
Q 020060 199 -------------LLQSLKAYQNAEKDER----MKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA------T 255 (331)
Q Consensus 199 -------------~~~A~~~~~~al~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~ 255 (331)
+++|+..+++++.... .+....++.++|.++...|++++|..++++++.+.+.... .
T Consensus 146 ~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 225 (338)
T 3ro2_A 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 225 (338)
T ss_dssp C----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999987421 1333457999999999999999999999999988654332 4
Q ss_pred -HHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 020060 256 -EEVQMMVNLLDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 256 -~~l~~~~~~l~~~~~a~~~~~~a~~l~~~ 284 (331)
..++.++...|++++|+..+.++..+.+.
T Consensus 226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 226 YSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999877654
No 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.79 E-value=1.3e-18 Score=147.53 Aligned_cols=165 Identities=12% Similarity=-0.020 Sum_probs=97.4
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|.....+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...| ++++|+..+++++..+|+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN--------RSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--------CHHHHHHHHTTSCGGGCSHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--------CHHHHHHHHHhCchhhcchH
Confidence 5555666666666666666666666666666666655 55666666666554 36666666666666666444
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC--
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL-- 252 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 252 (331)
..+...+..+... ++.++|+..+++++... |+++.+++++|.++...|++++|+..|.+++..+|++
T Consensus 186 ~~~~~~~~~l~~~---------~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~ 254 (287)
T 3qou_A 186 YQGLVAQIELLXQ---------AADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD 254 (287)
T ss_dssp HHHHHHHHHHHHH---------HTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG
T ss_pred HHHHHHHHHHHhh---------cccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc
Confidence 4444444445544 55555666666666533 6666666666666666666666666666666666655
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 253 NAT-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
..+ ..++.++..+|+.++++..|.++.
T Consensus 255 ~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 255 GQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp GHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 334 556666666666666665555544
No 78
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.79 E-value=1.9e-18 Score=160.53 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=134.4
Q ss_pred ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHH
Q 020060 77 VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
.|++ ++|+.+|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|++ .++..+|.++..+| +
T Consensus 2 ~g~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~ 72 (568)
T 2vsy_A 2 TADG-PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--------R 72 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--------C
T ss_pred CccH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------C
Confidence 4776 999999999999999999999999999999999999999999999999998 89999999999887 4
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh---
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL--- 232 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~--- 232 (331)
+++|+.+++++++.+|+++.++..+|.++... |++++|+..|+++++.. |.++.++.++|.++..+
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~ 141 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDA---------GQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDW 141 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999 99999999999999955 99999999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCcHH
Q 020060 233 ENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 233 g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|++++|...|++++..+|++...
T Consensus 142 g~~~~A~~~~~~al~~~p~~~~~ 164 (568)
T 2vsy_A 142 RALDVLSAQVRAAVAQGVGAVEP 164 (568)
T ss_dssp TTHHHHHHHHHHHHHHTCCCSCH
T ss_pred ccHHHHHHHHHHHHhcCCcccCh
Confidence 99999999999999999987654
No 79
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.79 E-value=2e-18 Score=146.34 Aligned_cols=204 Identities=12% Similarity=0.047 Sum_probs=182.5
Q ss_pred chhhHHHHHhhhhhhccc--ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHH----HHh---CChhHHHHHHHHHHhcCCC
Q 020060 61 TQRATYEYLKGKILDVVP--EYRKDAEDHLSKAVKLNPSLADAWLCLGSCI----WKK---GDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~----~~~---g~~~~A~~~~~~al~~~~~ 131 (331)
+....+|+.+|.++...+ ++ ++++.++.+++..+|++..+|+.++.++ ... +++++++.++.++++.+|.
T Consensus 64 P~~~taWn~R~~~L~~l~~~~~-~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk 142 (306)
T 3dra_A 64 ASHYTIWIYRFNILKNLPNRNL-YDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK 142 (306)
T ss_dssp TTCHHHHHHHHHHHHTCTTSCH-HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHHHcccccH-HHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC
Confidence 466778999999999999 87 9999999999999999999999999999 666 7899999999999999999
Q ss_pred h-HHHhhHHHHHHHhccCchhHHHHHH--HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh------HHHH
Q 020060 132 K-KILCQLSMLERSMAQGSENQAEIVE--ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK------LLQS 202 (331)
Q Consensus 132 ~-~~~~~l~~~~~~~g~~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~A 202 (331)
+ .+|...+.++..+|. ++ ++++++.++++.+|.+..+|.+.+.++... +. ++++
T Consensus 143 ny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l---------~~~~~~~~~~eE 205 (306)
T 3dra_A 143 NHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSK---------KHLATDNTIDEE 205 (306)
T ss_dssp CHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSS---------GGGCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---------cccchhhhHHHH
Confidence 9 999999999998874 66 999999999999999999999999999887 65 9999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH-HHHHHHHHHhcC---CCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER-ALSGFEASALKD---PSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
++++.+++..+ |.|..+|+.++.++...|+..+ ...++.+++.++ |.+..+ ..++.++...|+.++|++.+..
T Consensus 206 l~~~~~aI~~~--p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVKC--PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 99999999955 9999999999999999998666 445777777776 777777 9999999999999999999988
Q ss_pred hhh-HHHH
Q 020060 278 TKR-VASL 284 (331)
Q Consensus 278 a~~-l~~~ 284 (331)
+.. ++|+
T Consensus 284 l~~~~Dpi 291 (306)
T 3dra_A 284 LKSKYNPI 291 (306)
T ss_dssp HHHTTCGG
T ss_pred HHhccChH
Confidence 774 5554
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.78 E-value=7.7e-19 Score=147.48 Aligned_cols=156 Identities=17% Similarity=0.094 Sum_probs=132.9
Q ss_pred cccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--------CCh-HHHhhH
Q 020060 76 VVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--------PNK-KILCQL 138 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~-~~~~~l 138 (331)
..|++ ++|+.+|++++++ .|..+.++..+|.++...|++++|+.+|++++++. |.. .++..+
T Consensus 13 ~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 13 GLVPR-GSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp CCSCS-SSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45665 6777777777763 36678899999999999999999999999999873 333 788899
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
|.++...| ++++|+.++++++.. +|....++..+|.++... |++++|+.++++++
T Consensus 92 ~~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al 154 (283)
T 3edt_B 92 AVLYGKRG--------KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ---------GKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHTTT--------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHhc--------cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Confidence 99999887 499999999999987 467788999999999998 99999999999999
Q ss_pred hc------hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 211 KD------ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 211 ~~------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
.. ...|....++.++|.++..+|++++|+.+|++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 84 1135556779999999999999999999999999873
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.78 E-value=3.4e-18 Score=150.72 Aligned_cols=224 Identities=11% Similarity=0.027 Sum_probs=179.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHh
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LADAWLCLGSCIWKK 112 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~lg~~~~~~ 112 (331)
..+.+|+.++..+. +++..+.+++.+|.++...|++ +.|+.++.+++.+.+. .+.++..+|.+|...
T Consensus 122 ~~~~~al~~~~~~~-----~~~~~a~~~~~lg~~y~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~ 195 (378)
T 3q15_A 122 GYYREAEKELPFVS-----DDIEKAEFHFKVAEAYYHMKQT-HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF 195 (378)
T ss_dssp HHHHHHHTTGGGCC-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCC-----ChHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh
Confidence 33444444444443 4567889999999999999997 9999999999987442 356889999999999
Q ss_pred CChhHHHHHHHHHHhcCC---Ch----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc-----CCCCCchhHHHH
Q 020060 113 GDLPAAKNCFNLALSKGP---NK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT-----LDVKDGNSWYNL 180 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~---~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~~l 180 (331)
|++++|+.+|++++++.+ +. .++.++|.++..+| ++++|+.++++++. .+|..+.++..+
T Consensus 196 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 196 KHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG--------DDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 999999999999998743 21 57888999999887 49999999999999 788888899999
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhc---CCChhHHhhHHHHHHHhhc---HHHHHHHHHHHHhcCCCCcH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERM---KSNPDLYFNCATVNKYLEN---YERALSGFEASALKDPSLNA 254 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~ 254 (331)
|.++... |++++|+.++++++..... +.....+..++.++...++ +.+|+.++++. ...|....
T Consensus 268 a~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~ 337 (378)
T 3q15_A 268 SWTLCKA---------GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEA 337 (378)
T ss_dssp HHHHHHT---------TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHC---------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHH
Confidence 9999999 9999999999999984321 2223446778888888888 88888888872 22222233
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHhh
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~~~~~ 287 (331)
. ..+|.++...|++++|...+.++..+...+..
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~~ 371 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLKAQEDILK 371 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Confidence 4 88999999999999999999999988776544
No 82
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=6.1e-19 Score=134.41 Aligned_cols=115 Identities=11% Similarity=-0.015 Sum_probs=83.0
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
..+++++.++|++ .+++.+|.++...| ++++|+..|++++.++|+++.+|+++|.++... |+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g--------~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~---------g~ 85 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKG--------RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIK---------EQ 85 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TC
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cc
Confidence 4456666667766 66777777777665 377777777777777777777777777777777 77
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+++|+.+|+++++.+ |+++.+|+++|.++..+|++++|+.+|++++.+.|+.+
T Consensus 86 ~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 86 FQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777744 77777777777777777777777777777777777654
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.78 E-value=3.2e-18 Score=145.55 Aligned_cols=189 Identities=13% Similarity=0.050 Sum_probs=151.1
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHh-C
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKK-G 113 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g 113 (331)
.+.+++.+..... ++...+.++..+|.+|...|++ ++|+.+|++++.+.|.. +.++.++|.+|... |
T Consensus 59 ~~~~al~~~~~~~-----~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg 132 (292)
T 1qqe_A 59 SFLKAADYQKKAG-----NEDEAGNTYVEAYKCFKSGGNS-VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH 132 (292)
T ss_dssp HHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444332 4456688999999999999998 99999999999987643 56899999999996 9
Q ss_pred ChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch-------hHHH
Q 020060 114 DLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN-------SWYN 179 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~~ 179 (331)
++++|+.+|++++++.|.. .++.++|.++..+| ++++|+.+|++++++.|+++. ++.+
T Consensus 133 ~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 133 DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--------QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 9999999999999998743 46788999999887 499999999999999988764 5788
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH-----HhhHHHHHH--HhhcHHHHHHHHHHHHhcCCCC
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL-----YFNCATVNK--YLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~ 252 (331)
+|.++..+ |++++|+.+|++++... |..+.. +..++..+. ..+++++|+..|++++.++|..
T Consensus 205 lg~~~~~~---------g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 205 KGLCQLAA---------TDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHc---------CCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 99999999 99999999999999855 766543 445566554 4578999999999999998876
Q ss_pred cH
Q 020060 253 NA 254 (331)
Q Consensus 253 ~~ 254 (331)
..
T Consensus 274 ~~ 275 (292)
T 1qqe_A 274 IT 275 (292)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.78 E-value=2.8e-17 Score=134.18 Aligned_cols=172 Identities=9% Similarity=-0.002 Sum_probs=145.3
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+.+++.+|..+...|++++|+..|+++++..|.+ .+++.+|.++...| ++++|+..|+++++.+|++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHCcCC
Confidence 46789999999999999999999999999999876 68999999999887 4999999999999999998
Q ss_pred ch---hHHHHHHHHHhhh---------hhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH-----------------hh
Q 020060 174 GN---SWYNLGNACLTSF---------FVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY-----------------FN 224 (331)
Q Consensus 174 ~~---~~~~l~~~~~~~~---------~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------------~~ 224 (331)
+. +++.+|.++.... ......+.|++++|+..|+++++.. |+++.++ ..
T Consensus 75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~ 152 (225)
T 2yhc_A 75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYS 152 (225)
T ss_dssp TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 75 7899999987520 0000012389999999999999954 8887654 67
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
+|.++...|++++|+..|+++++..|+++. + ..++.++..+|+.++|++.+.++.
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 899999999999999999999999999863 4 888999999999999987776544
No 85
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=1.8e-18 Score=152.67 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=157.7
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhc---CC---CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh------
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKL---NP---SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK------ 132 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~---~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 132 (331)
.+++.+|..+...|+| ++|+.+|++++.+ .+ ..+.++..+|.+|...|++++|+.++.+++++.+..
T Consensus 104 ~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 104 YFNFFRGMYELDQREY-LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 3566699999999998 9999999999997 23 356899999999999999999999999999885432
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc------hhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG------NSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
.++..+|.++..+| ++++|+.++++++++.+... .++.++|.+|... |++++|+.
T Consensus 183 ~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------g~~~~A~~ 245 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLK--------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ---------SQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC---------CCHHHHHH
Confidence 57888999999887 49999999999998866543 4899999999999 99999999
Q ss_pred HHHHHHhch----hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC-----CcHH-HHHHHHHHHHHH---HHHH
Q 020060 205 AYQNAEKDE----RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS-----LNAT-EEVQMMVNLLDK---IENL 271 (331)
Q Consensus 205 ~~~~al~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~-~~l~~~~~~l~~---~~~a 271 (331)
+|++++... ..|..+.++.++|.++..+|++++|..++++++.+.+. .... ..++.++...++ +.+|
T Consensus 246 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a 325 (383)
T 3ulq_A 246 YFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325 (383)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999999732 11555677999999999999999999999999998543 2222 445555555554 4455
Q ss_pred HHhhhhh
Q 020060 272 LKGHAKT 278 (331)
Q Consensus 272 ~~~~~~a 278 (331)
+..+.+.
T Consensus 326 l~~~~~~ 332 (383)
T 3ulq_A 326 FDFLESK 332 (383)
T ss_dssp HHHHHHT
T ss_pred HHHHHHC
Confidence 5444443
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.7e-18 Score=145.51 Aligned_cols=174 Identities=21% Similarity=0.188 Sum_probs=152.7
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-- 129 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 129 (331)
.+....++..+|.++...|++ ++|+.++++++.. .|....++..+|.++...|++++|+.+|++++++.
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKY-KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 457788999999999999998 9999999999987 35667899999999999999999999999999874
Q ss_pred ------CCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC--------CCCCchhHHHHHHHHHhhhhhcCCC
Q 020060 130 ------PNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL--------DVKDGNSWYNLGNACLTSFFVTGSW 194 (331)
Q Consensus 130 ------~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~~~ 194 (331)
|.. .++..+|.++...| ++++|+.+++++++. .|....++..+|.++...
T Consensus 144 ~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~------- 208 (311)
T 3nf1_A 144 VLGKDHPDVAKQLNNLALLCQNQG--------KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ------- 208 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHH-------
T ss_pred hcCCCChHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc-------
Confidence 333 77888999999887 499999999999987 677778999999999999
Q ss_pred ChhhHHHHHHHHHHHHhch-----------------------------------------------hcCCChhHHhhHHH
Q 020060 195 DHSKLLQSLKAYQNAEKDE-----------------------------------------------RMKSNPDLYFNCAT 227 (331)
Q Consensus 195 ~~~~~~~A~~~~~~al~~~-----------------------------------------------~~~~~~~~~~~la~ 227 (331)
|++++|+.++++++... ..|..+.++..+|.
T Consensus 209 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~ 286 (311)
T 3nf1_A 209 --GKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA 286 (311)
T ss_dssp --TCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 99999999999999731 12455677999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 228 VNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 228 ~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
++..+|++++|..+|++++++.|+
T Consensus 287 ~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 287 LYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998775
No 87
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=1.2e-17 Score=141.70 Aligned_cols=167 Identities=11% Similarity=0.013 Sum_probs=151.6
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+.....++.+|..+...|++ ++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+. ......+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNY-TDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 45567788999999999997 999999999999999999999999999999999999999999999999977 4444555
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC-
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN- 218 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~- 218 (331)
..+...+ +.++|+..+++++..+|+++.+++.+|.++... |++++|+..|.++++.+ |++
T Consensus 193 ~~l~~~~--------~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~---------g~~~~A~~~l~~~l~~~--p~~~ 253 (287)
T 3qou_A 193 IELLXQA--------ADTPEIQQLQQQVAENPEDAALATQLALQLHQV---------GRNEEALELLFGHLRXD--LTAA 253 (287)
T ss_dssp HHHHHHH--------TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTGG
T ss_pred HHHHhhc--------ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhcc--cccc
Confidence 5565443 478899999999999999999999999999999 99999999999999955 887
Q ss_pred -hhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 219 -PDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 219 -~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
+.++.++|.++..+|+.++|...|++++.
T Consensus 254 ~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 254 DGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 88999999999999999999999999875
No 88
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.76 E-value=3.2e-18 Score=134.34 Aligned_cols=166 Identities=11% Similarity=-0.030 Sum_probs=142.3
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|...+.+..+|..+...|++++|+..|+++++.+|++ .++..+|.++...| ++++|+..+++++..+| ++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------~~~~A~~~~~~a~~~~p-~~ 73 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK--------QFELAQELLATIPLEYQ-DN 73 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--------CHHHHHHHHTTCCGGGC-CH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--------CHHHHHHHHHHhhhccC-Ch
Confidence 4445678899999999999999999999999999999 99999999999887 49999999999999999 77
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC--
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL-- 252 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 252 (331)
..+..++.+.... .+...+|+..++++++.. |+++.+++++|.++...|++++|+..|+++++.+|+.
T Consensus 74 ~~~~~~~~~~~~~--------~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 143 (176)
T 2r5s_A 74 SYKSLIAKLELHQ--------QAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD 143 (176)
T ss_dssp HHHHHHHHHHHHH--------HHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT
T ss_pred HHHHHHHHHHHHh--------hcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh
Confidence 7666666553321 023345899999999955 9999999999999999999999999999999999986
Q ss_pred cHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 253 NAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 253 ~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
... ..++.++..+|+.++|+..|.+++.
T Consensus 144 ~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 144 GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 335 8999999999999999999987753
No 89
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8.1e-17 Score=148.28 Aligned_cols=202 Identities=10% Similarity=0.031 Sum_probs=174.2
Q ss_pred hhhHHHHHhhhhhhc-------ccccHH-------HHHHHHHHHHh-cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 62 QRATYEYLKGKILDV-------VPEYRK-------DAEDHLSKAVK-LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~-------~~~~~~-------~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
..+.+|+.+|..+.. .|++ + +|+..|+++++ ..|++..+|..+|.++...|++++|...|++++
T Consensus 270 ~~~~~w~~~~~~~~~~~~~~~~~g~~-~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 270 HHPDIWYEAAQYLEQSSKLLAEKGDM-NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhchhhhhccch-hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 457889999998875 7887 6 89999999997 899999999999999999999999999999999
Q ss_pred hcCCCh--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH-HhhhhhcCCCChhhHHHHH
Q 020060 127 SKGPNK--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC-LTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 127 ~~~~~~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~A~ 203 (331)
++.|.+ .+|..++.++...| ++++|..+|+++++..|.....+...+.+. ... |++++|.
T Consensus 349 ~~~p~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~---------~~~~~A~ 411 (530)
T 2ooe_A 349 AIEDIDPTLVYIQYMKFARRAE--------GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS---------KDKSVAF 411 (530)
T ss_dssp HSSSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHT---------CCHHHHH
T ss_pred CccccCchHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHc---------CChhHHH
Confidence 999986 47888999888664 699999999999999888777776666553 345 8999999
Q ss_pred HHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH----H-HHHHHHHHHHHHHHHHHHhhhhh
Q 020060 204 KAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA----T-EEVQMMVNLLDKIENLLKGHAKT 278 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~-~~l~~~~~~l~~~~~a~~~~~~a 278 (331)
..|+++++.. |+++.+|..++.++...|++++|...|++++...|.++. . ..........|+.+.+.+.+.++
T Consensus 412 ~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 412 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999965 999999999999999999999999999999998776654 3 44456667778888888888888
Q ss_pred hhHHH
Q 020060 279 KRVAS 283 (331)
Q Consensus 279 ~~l~~ 283 (331)
.+..+
T Consensus 490 ~~~~p 494 (530)
T 2ooe_A 490 FTAFR 494 (530)
T ss_dssp HHHTH
T ss_pred HHHCc
Confidence 77766
No 90
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=1.2e-18 Score=132.75 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=91.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 86 DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
..+++++.++|+++.+++.+|.++...|++++|+.+|++++.++|++ .+|.++|.++..+| ++++|+.+|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--------~~~~Ai~~~~ 94 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--------QFQQAADLYA 94 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--------cHHHHHHHHH
Confidence 34566777788888888888888888888888888888888888887 77888888888776 4888888888
Q ss_pred HHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh
Q 020060 165 EAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP 219 (331)
Q Consensus 165 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 219 (331)
++++++|+++.+|+++|.+|..+ |++++|+.+|+++++.. |+.+
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~l---------g~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRL---------KAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCHH
Confidence 88888888888888888888887 88888888888888744 5543
No 91
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.75 E-value=2.3e-17 Score=139.41 Aligned_cols=193 Identities=15% Similarity=0.084 Sum_probs=155.7
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..++.+|..+...|+| ++|+.+|++++..+|+++.++.++|.+|...|++++|+..++++++++|++ .+++.+|.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788999999999998 999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+..+| ++++|+..|+++++++|+++..+.......... .++......... ..+.++.+
T Consensus 82 ~~~~g--------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~--~~~~~~~i 139 (281)
T 2c2l_A 82 QLEME--------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI------------AKKKRWNSIEER--RIHQESEL 139 (281)
T ss_dssp HHHTT--------CHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH------------HHHHHHHHHHHT--CCCCCCHH
T ss_pred HHHcC--------CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH------------HHHHHHHHHHHH--HHhhhHHH
Confidence 99887 499999999999999998754443333322222 122222222223 34788888
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH-HHHHHHHHhhhhhhh
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL-DKIENLLKGHAKTKR 280 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l-~~~~~a~~~~~~a~~ 280 (331)
...++.++ .|++++|+..+++++..+|++... ..++.++... +.+.++...|.++..
T Consensus 140 ~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 140 HSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 77777765 799999999999999999988776 6666666665 666777777776654
No 92
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.74 E-value=1.9e-18 Score=149.83 Aligned_cols=179 Identities=12% Similarity=0.040 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhh------------cccccHHHHHHHHHHHHhcCCCcHHHHHHH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILD------------VVPEYRKDAEDHLSKAVKLNPSLADAWLCL 105 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 105 (331)
+...+++++..+..-....-.-++.. .+...|.... .++++ ++|+..+++++...|..+.++..+
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~-~~A~~~~~~a~~~~p~~a~~~~~~ 153 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSF-EKAKESWEMNSEEKLEQSTIVKER 153 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEE-ECCCCGGGCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeec-ccccchhcCCHHHHHHHHHHHHHH
Confidence 35678888888876110000011221 3444554432 56787 889999999999999999999999
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh----------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK----------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
|.+++..|++++|+.+|++++.+.|.+ .++.++|.++..+| ++++|+.++++++++
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--------AFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Confidence 999999999999999999999999987 34444444444443 244444444444444
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHH
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERA 238 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A 238 (331)
+|+++.+++++|.+|..+ |++++|+..|+++++.. |.++.++.++|.++..+|++++|
T Consensus 226 ~p~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAV---------NDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 44444444444444422 44444444444444444444444
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.74 E-value=2.5e-17 Score=145.21 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=146.3
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
...+++.+|..+...|+| ++|+.+|++++.+.+ ..+.++..+|.+|...|+++.|+.++.+++++.+..
T Consensus 100 ~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEY-VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 344678899999999998 999999999998742 346789999999999999999999999999875431
Q ss_pred ----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 133 ----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 133 ----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
.++..+|.++..+| ++++|+.++++++++.+. ...++.++|.+|... |++++|
T Consensus 179 ~~~~~~~~~lg~~y~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~---------~~~~~A 241 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFK--------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS---------GDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHH
T ss_pred hhHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---------CCHHHH
Confidence 56778999999887 499999999999986432 245788999999999 999999
Q ss_pred HHHHHHHHh-----chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 203 LKAYQNAEK-----DERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 203 ~~~~~~al~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
+.+|++++. .. |..+.++.++|.++..+|++++|..++++++.+.+.
T Consensus 242 ~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 242 VEHFQKAAKVSREKVP--DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhhCC--hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 999999998 43 666788999999999999999999999999998654
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.74 E-value=2.9e-16 Score=133.85 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=175.9
Q ss_pred HHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccc----------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 44 LALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPE----------YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 44 ~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
+|+...+.+.. ..|....+|+.++.++...+. + ++++.++..++..+|.+..+|...+.++...+
T Consensus 48 eaL~~t~~~L~----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l-~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 48 SVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALV-KAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHT----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHH----HCchhHHHHHHHHHHHHHhcccccchhhhHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccC
Confidence 45555554443 334667889999998887765 5 78999999999999999999999999999999
Q ss_pred C--hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhh
Q 020060 114 D--LPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 114 ~--~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 190 (331)
+ +++++.++.++++.+|.+ .+|...+.++..+|. .++++++++.++++.+|.+..+|++++.++....-.
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-------~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 4 899999999999999999 999999999998873 258999999999999999999999999998765211
Q ss_pred -----cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHh-----------hcHHHHHHHHHHHHhcCCCCcH
Q 020060 191 -----TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYL-----------ENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 191 -----~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+....+.++++++++.+++... |+|..+|+.+..++... +.+++++.++.+.+++.|++.-
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~--P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 11122367999999999999955 99999998776666555 6789999999999999999855
Q ss_pred H-HHHHHHHHH---HHHHHHHHHhhhhhhhHHHH
Q 020060 255 T-EEVQMMVNL---LDKIENLLKGHAKTKRVASL 284 (331)
Q Consensus 255 ~-~~l~~~~~~---l~~~~~a~~~~~~a~~l~~~ 284 (331)
. ..+..+... .+..++....+.+..+++|+
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 4 333322222 23333444445554444443
No 95
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.74 E-value=1.2e-16 Score=135.42 Aligned_cols=186 Identities=11% Similarity=-0.009 Sum_probs=165.5
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--ChhHHHHHHHHHHhcCCCh-HHHhhHHHHH----H
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG--DLPAAKNCFNLALSKGPNK-KILCQLSMLE----R 143 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~-~~~~~l~~~~----~ 143 (331)
-......|.+.++|+.++.++|.++|++..+|+..|.++...| ++++++.++.+++..+|++ .+|...+.++ .
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 3344456666589999999999999999999999999999999 9999999999999999999 9999999999 5
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH--HHHHHHHHHHhchhcCCChhH
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL--QSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~ 221 (331)
.++. .+++++++.++.++++.+|++..+|.+.+.++... |.++ +++.++.+++..+ |.|..+
T Consensus 119 ~l~~-----~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l---------~~~~~~~EL~~~~~~i~~d--~~N~sA 182 (306)
T 3dra_A 119 LNNN-----DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTF---------DLHNDAKELSFVDKVIDTD--LKNNSA 182 (306)
T ss_dssp HTTT-----CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCTTCHHHHHHHHHHHHHC--TTCHHH
T ss_pred hccc-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------cccChHHHHHHHHHHHHhC--CCCHHH
Confidence 4410 02488999999999999999999999999999988 8888 9999999999955 999999
Q ss_pred HhhHHHHHHHhhc------HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 222 YFNCATVNKYLEN------YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 222 ~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
|.+.+.+....+. +++++.++.+++..+|++..+ ..++.++...|+..+++
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 9999999999988 999999999999999999999 88888888887754444
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.74 E-value=4.6e-17 Score=139.41 Aligned_cols=174 Identities=11% Similarity=0.026 Sum_probs=147.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+.......+...|.++...|+| ++|+.+|.+++.+.+.. +.++.++|.+|...|++++|+.+|++++++.+..
T Consensus 31 ~~~~A~~~~~~a~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 31 DYDSAASEYAKAAVAFKNAKQL-EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 3445566677778999999998 99999999999986532 5689999999999999999999999999885432
Q ss_pred -------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 133 -------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++.++|.++.. | ++++|+.+|++++++.|.. ..++.++|.++..+ |++
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g--------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~ 171 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-L--------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ---------QKF 171 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-T--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCH
T ss_pred CCHHHHHHHHHHHHHHHHc-C--------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc---------CCH
Confidence 567778888876 6 5999999999999987654 56889999999999 999
Q ss_pred HHHHHHHHHHHhchhcCCC------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 200 LQSLKAYQNAEKDERMKSN------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
++|+.+|++++... +.+ ...+.++|.++..+|++++|+.+|++++ ++|+...
T Consensus 172 ~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 172 DEAAASLQKEKSMY--KEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHHHHHHHHHHHHH--HHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 99999999999854 433 2468899999999999999999999999 9997654
No 97
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.73 E-value=5.6e-19 Score=153.20 Aligned_cols=187 Identities=15% Similarity=0.127 Sum_probs=163.5
Q ss_pred hhhhhcccccHHHHHHHHHH----HHhcCCCcHHHHHHHHHHHH------------HhCChhHHHHHHHHHHhcCCCh-H
Q 020060 71 GKILDVVPEYRKDAEDHLSK----AVKLNPSLADAWLCLGSCIW------------KKGDLPAAKNCFNLALSKGPNK-K 133 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~------------~~g~~~~A~~~~~~al~~~~~~-~ 133 (331)
|.++...+.+ ++|+..+.. ++.+.|.. +|..+|.... ..+++++|+..|++++...|.. .
T Consensus 72 g~~~~~~~~~-e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~ 148 (336)
T 1p5q_A 72 GENLDLPYGL-ERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQST 148 (336)
T ss_dssp GGGGTCCHHH-HHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHH
T ss_pred CCccccchHH-HHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHH
Confidence 4555556776 899999999 89999987 5555554432 5677889999999999888887 8
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---------------chhHHHHHHHHHhhhhhcCCCChhh
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---------------GNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
.+..+|.++...| ++++|+..|++++.++|.+ ..+|.++|.++... |+
T Consensus 149 ~~~~~g~~~~~~g--------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------g~ 211 (336)
T 1p5q_A 149 IVKERGTVYFKEG--------KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL---------QA 211 (336)
T ss_dssp HHHHHHHHHHHHT--------CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHHHHHCC--------CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc---------CC
Confidence 9999999999887 5999999999999999998 58999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH-Hhhh
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL-KGHA 276 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~-~~~~ 276 (331)
+++|+.+|+++++.. |.++.+++++|.++..+|++++|+.+|+++++++|++... ..++.++..++++.++. +.|.
T Consensus 212 ~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 289 (336)
T 1p5q_A 212 FSAAIESCNKALELD--SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYA 289 (336)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999965 9999999999999999999999999999999999999988 99999999999999985 4444
Q ss_pred hhh
Q 020060 277 KTK 279 (331)
Q Consensus 277 ~a~ 279 (331)
+..
T Consensus 290 ~~~ 292 (336)
T 1p5q_A 290 NMF 292 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 98
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=1.3e-17 Score=126.98 Aligned_cols=113 Identities=13% Similarity=0.108 Sum_probs=55.5
Q ss_pred HHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 122 FNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 122 ~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
|++++.++|++ ..++.+|.++...| ++++|+..|++++..+|+++.+|+.+|.++... |+++
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~ 72 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSG--------XYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM---------GQYD 72 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHH---------hhHH
Confidence 44444444444 44444444444443 244444444444444454555555555555544 5555
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+|+..|++++... |+++.+++++|.++..+|++++|+.+|++++.++|+++
T Consensus 73 ~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 73 LAIHSYSYGAVMD--IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5555555555432 55555555555555555555555555555555555443
No 99
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.72 E-value=2.9e-17 Score=125.01 Aligned_cols=122 Identities=10% Similarity=0.120 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHH
Q 020060 85 EDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHA 163 (331)
Q Consensus 85 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~ 163 (331)
-..|++++.++|++..+++.+|.++...|++++|+..|++++..+|.+ .+|+.+|.++..+| ++++|+.+|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~ 78 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--------QYDLAIHSY 78 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--------hHHHHHHHH
Confidence 345888999999999999999999999999999999999999999988 88999999999887 499999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 164 KEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 164 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
++++.++|+++.+++++|.++... |++++|+..|+++++.. |+++......
T Consensus 79 ~~al~l~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~~ 129 (148)
T 2vgx_A 79 SYGAVMDIXEPRFPFHAAECLLQX---------GELAEAESGLFLAQELI--ANXPEFXELS 129 (148)
T ss_dssp HHHHHHSTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--TTCGGGHHHH
T ss_pred HHHHhcCCCCchHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHC--cCCCcchHHH
Confidence 999999999999999999999999 99999999999999855 8887664333
No 100
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.72 E-value=7.9e-16 Score=131.19 Aligned_cols=191 Identities=11% Similarity=0.107 Sum_probs=167.2
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD----------LPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
..|.+.++|+.++.+++.++|++..+|+..+.+....+. +++++.++..++..+|++ .+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 467776789999999999999999999999999988776 689999999999999999 999999999998
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh-HHHHHHHHHHHHhchhcCCChhHHh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK-LLQSLKAYQNAEKDERMKSNPDLYF 223 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 223 (331)
+|. ..+++++.++.++++.+|.+..+|.+.+.++... |. +++++.++.+++..+ |.|..+|.
T Consensus 121 l~~------~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l---------~~~~~eel~~~~~~I~~~--p~N~SAW~ 183 (331)
T 3dss_A 121 LPE------PNWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLITRN--FSNYSSWH 183 (331)
T ss_dssp CSS------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHHHC--SCCHHHHH
T ss_pred cCc------ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------CcCHHHHHHHHHHHHHHC--CCCHHHHH
Confidence 872 1388999999999999999999999999999988 77 699999999999955 99999999
Q ss_pred hHHHHHHHh--------------hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH-----------HHHHHHHHhhhh
Q 020060 224 NCATVNKYL--------------ENYERALSGFEASALKDPSLNAT-EEVQMMVNLL-----------DKIENLLKGHAK 277 (331)
Q Consensus 224 ~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l-----------~~~~~a~~~~~~ 277 (331)
+++.++... +.+++++.++.+++..+|++..+ ..+.-++... +.++++++.+.+
T Consensus 184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e 263 (331)
T 3dss_A 184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE 263 (331)
T ss_dssp HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence 999999988 77999999999999999999998 4444444333 667777777777
Q ss_pred hhhHHH
Q 020060 278 TKRVAS 283 (331)
Q Consensus 278 a~~l~~ 283 (331)
...+.|
T Consensus 264 lle~~p 269 (331)
T 3dss_A 264 LQELEP 269 (331)
T ss_dssp HHHHCT
T ss_pred HHhhCc
Confidence 776654
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.71 E-value=4.9e-16 Score=115.05 Aligned_cols=133 Identities=24% Similarity=0.439 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.+++.+|.++...|++++|+..++++++..|.+ ..+..+|.++...| ++++|+..+++++...|.++.++.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------DYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHCCCchHHHH
Confidence 456677777777777777777777777777766 66666777777555 377777777777777777777777
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
.+|.++... |++++|+..+++++... |.++.++..+|.++...|++++|..+|++++..+|+
T Consensus 74 ~l~~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 74 NLGNAYYKQ---------GDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHTT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHh---------cCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777 78888888888877743 777777788888888888888888888888777775
No 102
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.71 E-value=1e-16 Score=121.10 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHH
Q 020060 87 HLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKE 165 (331)
Q Consensus 87 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~ 165 (331)
.|++++.++|++..+++.+|.++...|++++|+..|++++..+|++ .+|+.+|.++..+| ++++|+.+|++
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~ 77 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--------LYEQALQSYSY 77 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHH
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--------hHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555 45555555555444 25555555555
Q ss_pred HhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHH
Q 020060 166 AITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLY 222 (331)
Q Consensus 166 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 222 (331)
++.++|+++.+++.+|.++... |++++|+..|++++... |.++...
T Consensus 78 al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~ 123 (142)
T 2xcb_A 78 GALMDINEPRFPFHAAECHLQL---------GDLDGAESGFYSARALA--AAQPAHE 123 (142)
T ss_dssp HHHHCTTCTHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HTCGGGH
T ss_pred HHhcCCCCcHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCcchH
Confidence 5555555555555555555555 55555555555555533 4444443
No 103
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=2.5e-17 Score=136.68 Aligned_cols=214 Identities=8% Similarity=-0.026 Sum_probs=177.3
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHH-------HHHHHHhCChhHHHHHHHHHHhcCCCh-HH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCL-------GSCIWKKGDLPAAKNCFNLALSKGPNK-KI 134 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~~~~-~~ 134 (331)
....++..|.-+ ..+++ ..|..+|.+++.++|+..++|.++ +.++...+...+++..+++.+.+.|.. .+
T Consensus 6 ~~~~~~~~~~~~-~~~d~-~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a 83 (282)
T 4f3v_A 6 RLASLFESAVSM-LPMSE-ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNA 83 (282)
T ss_dssp HHHHHHHHHHHH-TTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCC
T ss_pred HHHHHHHHHhcc-cCCCH-HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 344555666665 47886 999999999999999999999999 899999999999999999999999887 44
Q ss_pred Hhh---------------------HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCC
Q 020060 135 LCQ---------------------LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGS 193 (331)
Q Consensus 135 ~~~---------------------l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 193 (331)
++. ++.++...| ++++|.+.|...+...|.+. .++.+|.++...
T Consensus 84 ~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g--------~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~------ 148 (282)
T 4f3v_A 84 RIAIGGLYGDITYPVTSPLAITMGFAACEAAQG--------NYADAMEALEAAPVAGSEHL-VAWMKAVVYGAA------ 148 (282)
T ss_dssp EEECCTTTCCCEEECSSHHHHHHHHHHHHHHHT--------CHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHT------
T ss_pred hhccCCcccccccccCCHhHHHHHHHHHHHHCC--------CHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHc------
Confidence 444 567777665 59999999999999999888 999999999999
Q ss_pred CChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC--CC-CcHH-HHHHHHHHHHHHH
Q 020060 194 WDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKD--PS-LNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 194 ~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~-~~l~~~~~~l~~~ 268 (331)
+++++|+..|+.+.... .|. ...+++++|.++..+|++++|+.+|++++.-. |. .... ..++.++..+|+.
T Consensus 149 ---~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 149 ---ERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp ---TCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred ---CCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 99999999999887521 111 13579999999999999999999999998644 55 3345 9999999999999
Q ss_pred HHHHHhhhhhhhHHHHHhhccccccCCCcc
Q 020060 269 ENLLKGHAKTKRVASLASSLAVVKLSSSHK 298 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~~~~~~~~~~~~~~ 298 (331)
++|...+.++....|. ......-.+++|.
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL~~~~~~ 253 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAALKDPSYR 253 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHHhCCCCC
Confidence 9999999999988776 4444444455553
No 104
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.70 E-value=9.6e-17 Score=121.19 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=113.3
Q ss_pred HHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh
Q 020060 119 KNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS 197 (331)
Q Consensus 119 ~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 197 (331)
-..|++++.++|++ ..++.+|.++...| ++++|+..|++++..+|+++.+|..+|.++... |
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g 66 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQYQAG--------KWDDAQKIFQALCMLDHYDARYFLGLGACRQSL---------G 66 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------T
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHH---------h
Confidence 35678889999988 88999999999887 499999999999999999999999999999999 9
Q ss_pred hHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHH
Q 020060 198 KLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 198 ~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~ 268 (331)
++++|+..|++++... |.++.+++++|.++..+|++++|+.+|++++.++|+++.. .....+...++.+
T Consensus 67 ~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 67 LYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp CHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 9999999999999955 9999999999999999999999999999999999988765 4444444444443
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.70 E-value=1.8e-16 Score=147.23 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=127.1
Q ss_pred hCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhh
Q 020060 112 KGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFV 190 (331)
Q Consensus 112 ~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 190 (331)
.|++++|+.+|+++++.+|++ .++..+|.++...| ++++|+..++++++.+|+++.++..+|.++...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--- 70 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG--------DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQ--- 70 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHT---
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---
Confidence 478999999999999999998 89999999999887 499999999999999999999999999999999
Q ss_pred cCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH---H
Q 020060 191 TGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLL---D 266 (331)
Q Consensus 191 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l---~ 266 (331)
|++++|+..|+++++.. |.++.+++++|.++..+|++++|+.+|+++++++|++... ..++.++..+ |
T Consensus 71 ------g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g 142 (568)
T 2vsy_A 71 ------QRHAEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142 (568)
T ss_dssp ------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCT
T ss_pred ------CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccc
Confidence 99999999999999955 9999999999999999999999999999999999999988 9999999999 9
Q ss_pred HHHHHHHhhhhhhhHHH
Q 020060 267 KIENLLKGHAKTKRVAS 283 (331)
Q Consensus 267 ~~~~a~~~~~~a~~l~~ 283 (331)
++++|...+.++.+..+
T Consensus 143 ~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 143 ALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp THHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhcCC
Confidence 99999999999887654
No 106
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.3e-15 Score=140.46 Aligned_cols=180 Identities=11% Similarity=0.100 Sum_probs=163.0
Q ss_pred hhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCC----------hhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 74 LDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGD----------LPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
....|++.++|+..+.+++..+|++..+|+.++.++...|+ +++++.++.++++.+|++ .+|...+.++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34556666889999999999999999999999999999998 999999999999999999 9999999999
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh-hHHHHHHHHHHHHhchhcCCChhH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS-KLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
..+|. .+++++++++.++++.+|.+..+|.+.+.++... | .++++++++.++++.+ |.+..+
T Consensus 118 ~~l~~------~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l---------~~~~~~el~~~~~~I~~~--p~n~sa 180 (567)
T 1dce_A 118 SRLPE------PNWARELELCARFLEADERNFHCWDYRRFVAAQA---------AVAPAEELAFTDSLITRN--FSNYSS 180 (567)
T ss_dssp HTCSS------CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------CCCHHHHHHHHHTTTTTT--CCCHHH
T ss_pred HHccc------ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc---------CCChHHHHHHHHHHHHHC--CCCccH
Confidence 98872 1379999999999999999999999999999988 8 8999999999999965 999999
Q ss_pred HhhHHHHHHHh--------------hcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHH
Q 020060 222 YFNCATVNKYL--------------ENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIEN 270 (331)
Q Consensus 222 ~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~ 270 (331)
|+++|.++..+ +.+++|++++.+++.++|++..+ ..++-++...++.++
T Consensus 181 W~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 181 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 99999999885 78999999999999999999998 777777766665444
No 107
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.6e-15 Score=139.57 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-------hCChh-------HHHHHHHHHHh-cCCCh-HHHhhHHHHHHHh
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWK-------KGDLP-------AAKNCFNLALS-KGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~-~~~~~l~~~~~~~ 145 (331)
..++..|++++..+|.++.+|..+|..+.. .|+++ +|+..|+++++ +.|++ ..|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 378899999999999999999999999986 79987 99999999997 78988 8999999999988
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDG-NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
| ++++|...|+++++..|.++ .+|..++.++... |++++|...|+++++.. |.+...+..
T Consensus 335 g--------~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~Al~~~--~~~~~~~~~ 395 (530)
T 2ooe_A 335 M--------KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA---------EGIKSGRMIFKKAREDA--RTRHHVYVT 395 (530)
T ss_dssp T--------CHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHTCT--TCCTHHHHH
T ss_pred C--------CHHHHHHHHHHHhCccccCchHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcc--CCchHHHHH
Confidence 7 49999999999999999885 6999999999888 99999999999999854 777777777
Q ss_pred HHHH-HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 225 CATV-NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 225 la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.+.+ +...|++++|..+|+++++..|+++.. ..++.++..+|+.++|...|.++...
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 6666 346899999999999999999999888 99999999999999999998888754
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.68 E-value=4.4e-16 Score=125.92 Aligned_cols=170 Identities=15% Similarity=0.072 Sum_probs=100.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC----ChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG----DLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
..+.+++.+|.++...+++ ++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+++.+. .+ .+++
T Consensus 16 g~~~a~~~lg~~~~~~~~~-~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~~a~~ 89 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDY-QKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSKSGEI 89 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 3455666666666666665 6666666666654 456666666666666 5 666666666666443 23 5666
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV--KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER 214 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 214 (331)
++|.++..-.. ..+++++|+.+|+++++..| .++.++++||.+|..- ....+++++|+.+|++++..
T Consensus 90 ~Lg~~y~~g~g----~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g-----~g~~~d~~~A~~~~~~A~~~-- 158 (212)
T 3rjv_A 90 VLARVLVNRQA----GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG-----VHGPEDDVKASEYFKGSSSL-- 158 (212)
T ss_dssp HHHHHHTCGGG----SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT-----SSSSCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCC----CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHHHHHHc--
Confidence 66666654000 01246666666666666665 3466666666666651 00015666666666666642
Q ss_pred cCCChhHHhhHHHHHHHh-h-----cHHHHHHHHHHHHhcC
Q 020060 215 MKSNPDLYFNCATVNKYL-E-----NYERALSGFEASALKD 249 (331)
Q Consensus 215 ~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~ 249 (331)
+.++.+++++|.+|... | ++++|+.+|+++.+..
T Consensus 159 -~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 159 -SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp -SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 45566666666666543 2 6666666666666654
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=1.8e-15 Score=111.92 Aligned_cols=131 Identities=27% Similarity=0.438 Sum_probs=123.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
.+++.+|.++...|++ ++|+..+++++...|.+..++..+|.++...|++++|+.++++++...|.+ ..+..+|.++.
T Consensus 2 ~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDY-DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcH-HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4678899999999997 999999999999999999999999999999999999999999999999988 78889999999
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
..| ++++|+..+++++...|.++.++..+|.++... |++++|+..+++++...
T Consensus 81 ~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQG--------DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ---------GDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHS
T ss_pred Hhc--------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH---------ccHHHHHHHHHHHHccC
Confidence 887 499999999999999999999999999999988 99999999999999743
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.67 E-value=1.3e-15 Score=123.04 Aligned_cols=179 Identities=15% Similarity=0.091 Sum_probs=154.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQ 161 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~ 161 (331)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++++.. +..+++.+|.++.. +. ...++++|+.
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-~~~a~~~lg~~y~~-~g----~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-DGDALALLAQLKIR-NP----QQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CHHHHHHHHHHTTS-ST----TSCCHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHc-CC----CCCCHHHHHH
Confidence 5689999999986 789999999999999999999999999998763 23889999999987 41 1124999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHh----hhhhcCCCChhhHHHHHHHHHHHHhchhcC--CChhHHhhHHHHHHH----
Q 020060 162 HAKEAITLDVKDGNSWYNLGNACLT----SFFVTGSWDHSKLLQSLKAYQNAEKDERMK--SNPDLYFNCATVNKY---- 231 (331)
Q Consensus 162 ~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~la~~~~~---- 231 (331)
+|+++.+ +.++.++++||.+|.. . +++++|+.+|++++... + .++.+++++|.+|..
T Consensus 75 ~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~---------~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~ 141 (212)
T 3rjv_A 75 LAEKAVE--AGSKSGEIVLARVLVNRQAGA---------TDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHG 141 (212)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHTCGGGSS---------CCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHcCCCCc---------cCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCC
Confidence 9999975 5789999999999998 8 99999999999999965 7 469999999999999
Q ss_pred hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHH-H-----HHHHHHHhhhhhhhHH
Q 020060 232 LENYERALSGFEASALKDPSLNAT-EEVQMMVNLL-D-----KIENLLKGHAKTKRVA 282 (331)
Q Consensus 232 ~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l-~-----~~~~a~~~~~~a~~l~ 282 (331)
.+++++|+.+|+++... |.++.+ ..++.++..- + ++.+|+..|.+|.+..
T Consensus 142 ~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 142 PEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 89999999999999998 666666 9999988654 3 7899999999888763
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.67 E-value=1.5e-15 Score=122.46 Aligned_cols=147 Identities=14% Similarity=0.088 Sum_probs=86.8
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
.++.+|..+...|+| ++|+.+|++++ +| ++.+++.+|.+|...|++++|+.+|++++.++|++ .+++.+|.++..
T Consensus 8 ~~~~~g~~~~~~~~~-~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDW-KGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344555555555554 55555555553 22 34555555555555555555555555555555554 455555555554
Q ss_pred hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhh
Q 020060 145 MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFN 224 (331)
Q Consensus 145 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (331)
+| ++++|+..++++++..|.+.... +... | +. ..|..+.++++
T Consensus 84 ~~--------~~~~A~~~~~~al~~~~~~~~~~------~~~~---------~------------~~--~~~~~~~~~~~ 126 (213)
T 1hh8_A 84 TE--------KYDLAIKDLKEALIQLRGNQLID------YKIL---------G------------LQ--FKLFACEVLYN 126 (213)
T ss_dssp TT--------CHHHHHHHHHHHHHTTTTCSEEE------CGGG---------T------------BC--CEEEHHHHHHH
T ss_pred cc--------cHHHHHHHHHHHHHhCCCccHHH------HHHh---------c------------cc--cCccchHHHHH
Confidence 44 25555555555555554443221 0001 0 01 22445589999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+|.++..+|++++|..+|++++.++|++.
T Consensus 127 l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 127 IAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999999999999864
No 112
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.67 E-value=7.6e-15 Score=125.69 Aligned_cols=188 Identities=12% Similarity=0.005 Sum_probs=163.4
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC-ChhHHHHHHHHHHhcCCCh-HHHhhH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG-DLPAAKNCFNLALSKGPNK-KILCQL 138 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~-~~~~~l 138 (331)
+....++..+..+....+. .++|+.++.+++.++|++..+|+.++.++...| .+++++.++.+++..+|++ .+|...
T Consensus 51 ~~y~~~~~~~r~~~~~~e~-se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR 129 (349)
T 3q7a_A 51 EEYKDAMDYFRAIAAKEEK-SERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHR 129 (349)
T ss_dssp HHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3444455555555555555 489999999999999999999999999999999 5999999999999999999 999999
Q ss_pred HHHHHHh-ccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHH--------HHHHHHHHH
Q 020060 139 SMLERSM-AQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLL--------QSLKAYQNA 209 (331)
Q Consensus 139 ~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~a 209 (331)
+.++..+ +. ++++++.++.++++.+|++..+|...+.++... |.++ +++++++++
T Consensus 130 ~wlL~~l~~~-------~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l---------~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 130 LLLLDRISPQ-------DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHF---------STLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp HHHHHHHCCS-------CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHH---------HHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-------ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---------ccccccchhhHHHHHHHHHHH
Confidence 9999987 51 378999999999999999999999999999988 7777 999999999
Q ss_pred HhchhcCCChhHHhhHHHHHHHhhc-------HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 210 EKDERMKSNPDLYFNCATVNKYLEN-------YERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 210 l~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
++.+ |.|..+|.+++.++...+. +++++.++.+++.++|++..+ ..+..++...|+
T Consensus 194 I~~d--p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 194 LRVD--GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHC--TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHhC--CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9955 9999999999999999886 799999999999999999988 666666655443
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.67 E-value=4.8e-15 Score=125.90 Aligned_cols=170 Identities=14% Similarity=0.055 Sum_probs=141.3
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
....+...+..+...|+| ++|+..+.++++..+... ..++.+|.++...|++++|+.+|++++...+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y-~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHHHhhhH-HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 344566778889999998 999999999999887653 346779999999999999999999999865433
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc---CCCCCc----hhHHHHHHHHHhhhhhcCCCChhhHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT---LDVKDG----NSWYNLGNACLTSFFVTGSWDHSKLLQS 202 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~---~~p~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~A 202 (331)
.++..+|.++...| ++++|+.+++++++ ..|++. .+++++|.+|... |++++|
T Consensus 153 ~~~~~~~~lg~~y~~~~--------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~A 215 (293)
T 2qfc_A 153 QNLYIENAIANIYAENG--------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEES 215 (293)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT---------TCHHHH
T ss_pred HHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH---------hhHHHH
Confidence 47888999999887 49999999999994 445432 5899999999999 999999
Q ss_pred HHHHHHHHhchhcCC----ChhHHhhHHHHHHHhhcHHHH-HHHHHHHHhcCC
Q 020060 203 LKAYQNAEKDERMKS----NPDLYFNCATVNKYLENYERA-LSGFEASALKDP 250 (331)
Q Consensus 203 ~~~~~~al~~~~~~~----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~ 250 (331)
+.++++++....... .+.+++++|.++..+|++++| ..+|++++.+..
T Consensus 216 l~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 999999997532122 257799999999999999999 888999997643
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.67 E-value=3.8e-15 Score=114.83 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=122.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
...+..++.+|.++...|++ ++|+.+|.+++..+|.++.++..+|.++...|++++|+.+|.++++.+|.+ .++..+|
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a 88 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35678899999999999998 999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH--HHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.++..+| ++++|+.+++++++.+|.++.++..++.+ +... |++++|+..+.++..
T Consensus 89 ~~~~~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALG--------KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ---------KAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHhc--------cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHcccchHH
Confidence 9999887 49999999999999999999988665555 6666 999999999998875
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-15 Score=112.63 Aligned_cols=116 Identities=17% Similarity=0.118 Sum_probs=108.0
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..++.+|..+...|+| ++|+.+|.+++.++|+++.+|.++|.++...|++++|+.+|+++++++|++ .+++.+|.
T Consensus 2 ~~a~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDW-PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 4567899999999999998 999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCC------CCCchhHHHHHHHHHh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLD------VKDGNSWYNLGNACLT 186 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~ 186 (331)
++..+| ++++|+..++++++++ |.+..++..++.+...
T Consensus 81 ~~~~~~--------~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 81 AQIAVK--------EYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHh--------CHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999887 4999999999999999 8888888888776643
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=4.2e-15 Score=119.79 Aligned_cols=154 Identities=12% Similarity=0.163 Sum_probs=125.6
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
.+++++|+..+.... .+ .+.+++.+|.++...|++ ++|+.+|++++..+|+++.++..+|.+|...|++++|
T Consensus 19 ~~~~~~A~~~~~~a~-----~~--~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ-----DP--HSRICFNIGCMYTILKNM-TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp TTCHHHHHHHHHTSS-----SC--CHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCHHHHHHHHHHHc-----CC--ChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHH
Confidence 467788999998874 33 567899999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhh
Q 020060 119 KNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 119 ~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
+.+|+++++..|.+.... +..+| +...|..+.+++++|.++... |+
T Consensus 91 ~~~~~~al~~~~~~~~~~-----~~~~~--------------------~~~~~~~~~~~~~l~~~~~~~---------g~ 136 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLID-----YKILG--------------------LQFKLFACEVLYNIAFMYAKK---------EE 136 (213)
T ss_dssp HHHHHHHHHTTTTCSEEE-----CGGGT--------------------BCCEEEHHHHHHHHHHHHHHT---------TC
T ss_pred HHHHHHHHHhCCCccHHH-----HHHhc--------------------cccCccchHHHHHHHHHHHHc---------cC
Confidence 999999999999872110 11111 255677788999999999999 99
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
+++|+..|+++++.. |.+. .+..+.|+..+.+....
T Consensus 137 ~~~A~~~~~~al~~~--p~~~------------~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 137 WKKAEEQLALATSMK--SEPR------------HSKIDKAMECVWKQKLY 172 (213)
T ss_dssp HHHHHHHHHHHHTTC--CSGG------------GGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC--cccc------------cchHHHHHHHHHhcccc
Confidence 999999999999855 7653 24566666666655443
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.65 E-value=6e-15 Score=113.69 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
+..+..+|.++...|++++|+.+|.++++..|.+ .++..+|.++...| ++++|+..++++++.+|.++.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELDKKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCcccHHHH
Confidence 4556666677777777777777777776666665 56666666666554 36666666666666666666666
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH--HHHHhhcHHHHHHHHHHHHh
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT--VNKYLENYERALSGFEASAL 247 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~ 247 (331)
..+|.++... |++++|+.+|++++... |.++.++..++. .+...|++++|+..+.++..
T Consensus 85 ~~~a~~~~~~---------~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMAL---------GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---------ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 6666666666 66666666666666633 666655533333 35555666666666655543
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=4.4e-15 Score=126.09 Aligned_cols=168 Identities=13% Similarity=0.054 Sum_probs=137.7
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-----
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD------AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----- 132 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----- 132 (331)
...+...+..+...|+| ++|+..+++++...+..+. .+..+|.++...|++++|+.+|++++...+..
T Consensus 75 ~~~l~~~i~~~~~~~~y-~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~ 153 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRY-KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTH
T ss_pred HHHHHHHHHHHHHHhhH-HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHH
Confidence 34445567788899998 9999999999998776654 34468999999999999999999999875443
Q ss_pred --HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 --KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 --~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.++.++|.++..+| ++++|+.+++++++. .+....+++++|.+|... |++++|+
T Consensus 154 ~~~~~~~lg~~y~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~---------~~y~~A~ 216 (293)
T 3u3w_A 154 NLYIENAIANIYAENG--------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD---------SRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH---------hHHHHHH
Confidence 26888999999887 499999999999952 233456889999999999 9999999
Q ss_pred HHHHHHHhchhcCC----ChhHHhhHHHHHHHhh-cHHHHHHHHHHHHhcC
Q 020060 204 KAYQNAEKDERMKS----NPDLYFNCATVNKYLE-NYERALSGFEASALKD 249 (331)
Q Consensus 204 ~~~~~al~~~~~~~----~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~ 249 (331)
.++++++....... -+.+++++|.++..+| ++++|+.+|++|+.+.
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 99999998541121 2577999999999999 5799999999999753
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=9.7e-16 Score=120.00 Aligned_cols=131 Identities=12% Similarity=0.172 Sum_probs=96.1
Q ss_pred hhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH-HHHhccC
Q 020060 71 GKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML-ERSMAQG 148 (331)
Q Consensus 71 g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~-~~~~g~~ 148 (331)
+..+...|++ ++|+..+++++..+|.++.+|..+|.+|...|++++|+.+|+++++++|++ .++..+|.+ +...|
T Consensus 17 ~~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~-- 93 (177)
T 2e2e_A 17 LHQFASQQNP-EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS-- 93 (177)
T ss_dssp TCCCC------CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--
T ss_pred hhhhhhccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--
Confidence 3445667887 888999999999999888899999999998888888888888888888877 677777777 55554
Q ss_pred chhHHHHH--HHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhH
Q 020060 149 SENQAEIV--EESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 149 ~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (331)
++ ++|+..++++++.+|+++.++..+|.++... |++++|+..|++++... |.++..
T Consensus 94 ------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~ 151 (177)
T 2e2e_A 94 ------QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ---------ANYAQAIELWQKVMDLN--SPRINR 151 (177)
T ss_dssp ------TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTC--CTTSCH
T ss_pred ------CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHhhC--CCCccH
Confidence 35 7777777777777777777777777777776 77777777777777643 665543
No 120
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.65 E-value=1e-14 Score=132.96 Aligned_cols=196 Identities=14% Similarity=0.104 Sum_probs=87.3
Q ss_pred HHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHHhh
Q 020060 66 YEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKILCQ 137 (331)
Q Consensus 66 ~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~ 137 (331)
.++.+|.++.. .+++ ++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+.. ...+++.
T Consensus 221 a~~~lg~~y~~g~g~~~~~-~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~-~~~a~~~ 296 (490)
T 2xm6_A 221 GQLHLADMYYFGIGVTQDY-TQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG-NSDGQYY 296 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC-CHHHHHH
Confidence 44445555543 4454 5555555555443 234455555555554 455555555555554431 1144444
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++...... ..+++++|+..|+++++. .++.+++.+|.+|... + ..+++++|+.+|+++++ ..
T Consensus 297 Lg~~y~~~~~g---~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~----g--~~~~~~~A~~~~~~a~~----~~ 361 (490)
T 2xm6_A 297 LAHLYDKGAEG---VAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRL----G--SEEEHKKAVEWFRKAAA----KG 361 (490)
T ss_dssp HHHHHHHCBTT---BCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHS----C--CHHHHHHHHHHHHHHHH----TT
T ss_pred HHHHHHcCCCC---CcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhC----C--CcccHHHHHHHHHHHHH----CC
Confidence 55444433000 001244555555544443 2334444455544442 0 00244455555555443 23
Q ss_pred ChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhhHH
Q 020060 218 NPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKRVA 282 (331)
Q Consensus 218 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~l~ 282 (331)
++.+++++|.+|.. .+++++|+.+|+++.... ++.+ ..++.++.. .+++.+|...|.+|....
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44445555555544 445555555555544432 2333 444444444 444444444444444443
No 121
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=2.6e-15 Score=116.09 Aligned_cols=119 Identities=18% Similarity=0.140 Sum_probs=110.8
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..++.+|.++...|+| ++|+.+|++++.++|+++.+|..+|.+|...|++++|+.+|+++++++|++ .+++.
T Consensus 6 ~~~~~a~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 6 APTPESDKLKSEGNAAMARKEY-SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4457788999999999999998 999999999999999999999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHh
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLT 186 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 186 (331)
+|.++..+| ++++|+.+|+++++++|+++.+|...+.....
T Consensus 85 lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 85 LGLARFDMA--------DYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHcc--------CHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 999999887 49999999999999999999988877776554
No 122
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.64 E-value=2.4e-14 Score=130.48 Aligned_cols=193 Identities=10% Similarity=0.017 Sum_probs=93.7
Q ss_pred hHHHHHhhhhhhc----ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH----hCChhHHHHHHHHHHhcCCChHHH
Q 020060 64 ATYEYLKGKILDV----VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWK----KGDLPAAKNCFNLALSKGPNKKIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~ 135 (331)
+.+++.+|.+|.. .+++ ++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..+ ..++
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~-~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-~~a~ 258 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERND-AISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN-SIAQ 258 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCH-HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHHHHHHHhcCCCCCcCH-HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-HHHH
Confidence 3444555555554 4554 5555555555543 234555555555554 4555555555555554321 1444
Q ss_pred hhHHHHHHH----hccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 136 CQLSMLERS----MAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 136 ~~l~~~~~~----~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+.+|.++.. .+ ++++|+.+|+++.+. .++.+++.+|.+|...... ..+++++|+.+|+++++
T Consensus 259 ~~lg~~y~~g~~~~~--------d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g----~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 259 FRLGYILEQGLAGAK--------EPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEG----VAKNREQAISWYTKSAE 324 (490)
T ss_dssp HHHHHHHHHTTTSSC--------CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTT----BCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC--------CHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCC----CcCCHHHHHHHHHHHHh
Confidence 455555544 22 255555555555443 3444555555555432000 11355555555555554
Q ss_pred chhcCCChhHHhhHHHHHHHhh---cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhh
Q 020060 212 DERMKSNPDLYFNCATVNKYLE---NYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKR 280 (331)
Q Consensus 212 ~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~ 280 (331)
..++.+++++|.+|...| ++++|+.+|+++.+. .++.. ..++.++.. .+++.+|+..+.++.+
T Consensus 325 ----~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 325 ----QGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp ----TTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 344455555555555433 555555555555544 23333 555555544 4555555555554443
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.64 E-value=2.9e-15 Score=117.28 Aligned_cols=128 Identities=11% Similarity=0.043 Sum_probs=115.3
Q ss_pred HHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH-HHh
Q 020060 109 IWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA-CLT 186 (331)
Q Consensus 109 ~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~-~~~ 186 (331)
+...|++++|+..++++++.+|.+ .++..+|.++...| ++++|+.+|+++++.+|+++.++..+|.+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--------DYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 356789999999999999999998 89999999999887 49999999999999999999999999999 777
Q ss_pred hhhhcCCCChhhH--HHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 187 SFFVTGSWDHSKL--LQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 187 ~~~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
. |++ ++|+..+++++... |.++.+++++|.++...|++++|+.+|++++.++|++...
T Consensus 92 ~---------~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 92 A---------SQHMTAQTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp T---------TTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred c---------CCcchHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 7 898 99999999999955 9999999999999999999999999999999999998654
No 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.6e-15 Score=109.85 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=56.6
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+..+..+|..++..|++++|+.+|+++++++|++ .++.++|.++..+| ++++|+..++++++++|+++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~ 74 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--------SFPEAIADCNKAIEKDPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCCcHHH
Confidence 34555666666666666666666666666666655 55555555555554 2555555555555555555555
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
|+.+|.++... |++++|+..|+++++
T Consensus 75 ~~~lg~~~~~~---------~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 75 YIRKATAQIAV---------KEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---------hCHHHHHHHHHHHHH
Confidence 55555555555 555555555555555
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=4.1e-16 Score=143.87 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=159.2
Q ss_pred chhhHHHHHhhhhhhcccc----------cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC--ChhHHHHHHHHHHhc
Q 020060 61 TQRATYEYLKGKILDVVPE----------YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG--DLPAAKNCFNLALSK 128 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~ 128 (331)
+....+|+.++.++...|+ + ++++.++.+++..+|++..+|+.++.++...+ ++++++.++.++++.
T Consensus 60 P~~~taW~~R~~~l~~l~~~~~~~~~~~~~-~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~ 138 (567)
T 1dce_A 60 PDFATLWNCRREVLQHLETEKSPEESAALV-KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA 138 (567)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCHHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhcccccchhhhhhhH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh
Confidence 4567889999999999888 8 99999999999999999999999999999999 679999999999999
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc-----CCCChhhHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT-----GSWDHSKLLQS 202 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-----~~~~~~~~~~A 202 (331)
+|.+ .+|...+.++..+|. .++++++++.++++.+|.+..+|++++.++..+.-.. +....+.++++
T Consensus 139 d~~N~~aW~~R~~~l~~l~~-------~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~ee 211 (567)
T 1dce_A 139 DERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE 211 (567)
T ss_dssp CTTCHHHHHHHHHHHHHTCC-------CHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred ccccccHHHHHHHHHHHcCC-------ChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHH
Confidence 9999 999999999998872 4899999999999999999999999999988741110 01133789999
Q ss_pred HHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH------------HHHHHHHHHhcCCCC
Q 020060 203 LKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER------------ALSGFEASALKDPSL 252 (331)
Q Consensus 203 ~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~------------A~~~~~~al~~~~~~ 252 (331)
++++.+++... |++..+|++++.++...+++++ |+.+|.+++.++|..
T Consensus 212 l~~~~~ai~~~--P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 212 LELVQNAFFTD--PNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp HHHHHHHHHHC--SSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred HHHHHHHHhhC--CCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 99999999955 9999999999999999988766 566688888777763
No 126
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.63 E-value=1.9e-14 Score=126.18 Aligned_cols=205 Identities=12% Similarity=-0.005 Sum_probs=163.2
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC----
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP---- 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 130 (331)
.....++..+|.++...|++ ++|+..+++++.+.|.. ..++..+|.++...|++++|+.++++++++.+
T Consensus 50 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 128 (373)
T 1hz4_A 50 YSRIVATSVLGEVLHCKGEL-TRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL 128 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34566788999999999998 99999999999876543 34578899999999999999999999998752
Q ss_pred ----Ch-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHhhhhhcCCCChhhHH
Q 020060 131 ----NK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD-----GNSWYNLGNACLTSFFVTGSWDHSKLL 200 (331)
Q Consensus 131 ----~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~~ 200 (331)
.. ..+..+|.++...| ++++|..++++++...+.. ..++..+|.++... |+++
T Consensus 129 ~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~---------g~~~ 191 (373)
T 1hz4_A 129 EQLPMHEFLVRIRAQLLWAWA--------RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR---------GDLD 191 (373)
T ss_dssp TTSTHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH---------TCHH
T ss_pred ccCcHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc---------CCHH
Confidence 22 56777999999887 4999999999999887653 34678899999988 9999
Q ss_pred HHHHHHHHHHhchhcCCChhHHh-----hHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH----H-HHHHHHHHHHHHHHH
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYF-----NCATVNKYLENYERALSGFEASALKDPSLNA----T-EEVQMMVNLLDKIEN 270 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~-~~l~~~~~~l~~~~~ 270 (331)
+|...+++++.....+..+..+. .++.++...|++++|..++++++...|.... . ..++.++...|++++
T Consensus 192 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 271 (373)
T 1hz4_A 192 NARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEP 271 (373)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 99999999987532233322222 3445688999999999999999987765321 2 677888888899999
Q ss_pred HHHhhhhhhhHHH
Q 020060 271 LLKGHAKTKRVAS 283 (331)
Q Consensus 271 a~~~~~~a~~l~~ 283 (331)
|...+.++..+.+
T Consensus 272 A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 272 AEIVLEELNENAR 284 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888776644
No 127
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.63 E-value=6.1e-15 Score=117.70 Aligned_cols=175 Identities=14% Similarity=0.113 Sum_probs=136.8
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC------Ch-HHHhhHHHHHHHhcc
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP------NK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------~~-~~~~~l~~~~~~~g~ 147 (331)
+..|+| ++|...++......+..+.++..+|.++...|++++|+.++++++.+.. .. .++..+|.++...|
T Consensus 3 ~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g- 80 (203)
T 3gw4_A 3 FEAHDY-ALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG- 80 (203)
T ss_dssp ----CH-HHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred cccccH-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC-
Confidence 457887 9999966555554446789999999999999999999999999998532 22 67888999999887
Q ss_pred CchhHHHHHHHHHHHHHHHhcC---CC----CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh-
Q 020060 148 GSENQAEIVEESIQHAKEAITL---DV----KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP- 219 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~---~p----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~- 219 (331)
++++|+.++++++.+ .+ ....++.++|.++... |++++|+.++++++.......++
T Consensus 81 -------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 81 -------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF---------GDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp -------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -------CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHhccchH
Confidence 499999999999987 33 2345788999999999 99999999999999743223333
Q ss_pred ---hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Q 020060 220 ---DLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDK 267 (331)
Q Consensus 220 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~ 267 (331)
.++.++|.++...|++++|..++++++.+..........+.++..++.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 195 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNG 195 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccc
Confidence 337899999999999999999999999987666555555555555443
No 128
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.63 E-value=3.3e-15 Score=110.45 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=95.4
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--------
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------- 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------- 132 (331)
++.+..+..+|..++..|+| ++|+.+|+++++++|+++.+|.++|.+|...|++++|+..|+++++++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~-~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDF-EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence 46677889999999999998 999999999999999999999999999999999999999999999998765
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
.++.++|.++..+| ++++|+.+|++++...|+ +....
T Consensus 84 ~~~~~lg~~~~~~~--------~~~~A~~~~~kal~~~~~-~~~~~ 120 (127)
T 4gcn_A 84 KAMSRAGNAFQKQN--------DLSLAVQWFHRSLSEFRD-PELVK 120 (127)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhCcC-HHHHH
Confidence 36677888888776 599999999999998774 44433
No 129
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.63 E-value=3.5e-16 Score=141.23 Aligned_cols=159 Identities=14% Similarity=0.092 Sum_probs=105.2
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..++| ++|+..|..++...|..+.++..+|.+++..|+|++|+.+|++++++.|.+..+. ..
T Consensus 246 ~l~~~-~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~-----------------~~ 307 (457)
T 1kt0_A 246 TLKSF-EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS-----------------EK 307 (457)
T ss_dssp EEEEE-ECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC-----------------HH
T ss_pred hhhhc-ccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC-----------------hH
Confidence 56677 8899999999999999999999999999999999999999999999998861100 00
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
... +..+....+|+++|.+|..+ |++++|+.+|++++... |.++.+++++|.+|..+|++
T Consensus 308 ~~~---------~~~~~~~~~~~nla~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~~g~a~~~~g~~ 367 (457)
T 1kt0_A 308 ESK---------ASESFLLAAFLNLAMCYLKL---------REYTKAVECCDKALGLD--SANEKGLYRRGEAQLLMNEF 367 (457)
T ss_dssp HHH---------HHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHH---------HHHHHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHccCH
Confidence 000 01112234556666666666 66666666666666633 66666666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 236 ERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 236 ~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
++|+.+|+++++++|++... ..++.++..++++.++.
T Consensus 368 ~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 368 ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555 66666666666655554
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.62 E-value=1e-15 Score=122.19 Aligned_cols=167 Identities=13% Similarity=0.034 Sum_probs=119.1
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccC
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQG 148 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~ 148 (331)
..+......|+| ++|.+.+.......+..+..+..+|.+++..|++++|+.+|.+++.+.|.+..+... . .
T Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-~----~--- 79 (198)
T 2fbn_A 9 HHSSGRENLYFQ-GAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ-I----L--- 79 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH-H----H---
T ss_pred chhhhhhhhhhc-cccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh-h----H---
Confidence 344455556666 666666665555555667777778888888888888888888888777665211110 0 0
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 149 SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 149 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
......+ ...++.++|.++... |++++|+.++++++... |.++.+++++|.+
T Consensus 80 -----~~~~~~~------------~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 131 (198)
T 2fbn_A 80 -----LDKKKNI------------EISCNLNLATCYNKN---------KDYPKAIDHASKVLKID--KNNVKALYKLGVA 131 (198)
T ss_dssp -----HHHHHHH------------HHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred -----HHHHHHH------------HHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 0011111 146889999999999 99999999999999955 9999999999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
+..+|++++|+.+|++++.++|++... ..++.++..+++..++.
T Consensus 132 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 132 NMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888 89999999988887776
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=6.4e-15 Score=113.86 Aligned_cols=103 Identities=10% Similarity=0.012 Sum_probs=58.4
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..++.+|.++...| ++++|+.+|+++++++|+++.+|+++|.+|... |++++|+..|++++..
T Consensus 12 ~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 12 DKLKSEGNAAMARK--------EYSKAIDLYTQALSIAPANPIYLSNRAAAYSAS---------GQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHh
Confidence 34445555555444 255555555555555555555555555555555 5566666666666553
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
. |.++.+|+++|.++..+|++++|+.+|++++.++|++..
T Consensus 75 ~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 75 D--PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp C--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 3 555555666666666666666666666666666665554
No 132
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.62 E-value=4.5e-15 Score=127.10 Aligned_cols=213 Identities=10% Similarity=-0.037 Sum_probs=164.3
Q ss_pred chhhHHHHHhhhhhhccc-ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh-C-ChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 61 TQRATYEYLKGKILDVVP-EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK-G-DLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g-~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
+....+|+.++.++...+ .+ ++++.++.+++..+|++..+|..++.++... + ++++++.++.++++.+|.+ .+|.
T Consensus 85 P~~ytaWn~R~~iL~~l~~~l-~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~ 163 (349)
T 3q7a_A 85 PAHYTVWQYRFSLLTSLNKSL-EDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWA 163 (349)
T ss_dssp TTCHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHH
T ss_pred chhHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 456788999999999999 57 9999999999999999999999999999998 8 9999999999999999999 9999
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
..+.++..+|.........+.++++++.++++.+|.+..+|++.+.++....... .....++++++++.+++... |
T Consensus 164 ~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~--~~~~~~~eELe~~~~aI~~~--P 239 (349)
T 3q7a_A 164 YLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE--TSSRSLQDELIYILKSIHLI--P 239 (349)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC--CCHHHHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHHhC--C
Confidence 9999999876311101112349999999999999999999999999998771000 01123799999999999955 9
Q ss_pred CChhHHhhHHHHHHHhhcH--------------------HHHHHHHHHHHhcC------CCCcHH-HHHHHHHHHHHHHH
Q 020060 217 SNPDLYFNCATVNKYLENY--------------------ERALSGFEASALKD------PSLNAT-EEVQMMVNLLDKIE 269 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------~~~~~~-~~l~~~~~~l~~~~ 269 (331)
.|..+|+++..++...|+. ..-........... +....+ ..++.++...++..
T Consensus 240 ~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~ 319 (349)
T 3q7a_A 240 HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVD 319 (349)
T ss_dssp TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHH
Confidence 9999999999998887764 12222222222211 244455 88888888888777
Q ss_pred HHHHhhhhh
Q 020060 270 NLLKGHAKT 278 (331)
Q Consensus 270 ~a~~~~~~a 278 (331)
+|++.+...
T Consensus 320 ~a~~~~~~l 328 (349)
T 3q7a_A 320 DAAKVFEKL 328 (349)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666553
No 133
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.62 E-value=7.8e-16 Score=122.95 Aligned_cols=150 Identities=14% Similarity=-0.002 Sum_probs=117.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSM 140 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~ 140 (331)
...+..+..+|..++..|+| ++|+.+|.+++.+.|.++..... ........+ ...++.++|.
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~-------------~~~~~~~~~----~~~~~~~la~ 96 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEI-NEAIVKYKEALDFFIHTEEWDDQ-------------ILLDKKKNI----EISCNLNLAT 96 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHTTTTCTTCCCH-------------HHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhcccccchh-------------hHHHHHHHH----HHHHHHHHHH
Confidence 34677899999999999998 99999999999998876532111 000011111 0267888999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
++..+| ++++|+.+++++++.+|.++.+++.+|.++... |++++|+..|++++... |.++.
T Consensus 97 ~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~ 157 (198)
T 2fbn_A 97 CYNKNK--------DYPKAIDHASKVLKIDKNNVKALYKLGVANMYF---------GFLEEAKENLYKAASLN--PNNLD 157 (198)
T ss_dssp HHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHhc--------CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc---------ccHHHHHHHHHHHHHHC--CCcHH
Confidence 999887 499999999999999999999999999999999 99999999999999955 99999
Q ss_pred HHhhHHHHHHHhhcHHHHH-HHHHHHHh
Q 020060 221 LYFNCATVNKYLENYERAL-SGFEASAL 247 (331)
Q Consensus 221 ~~~~la~~~~~~g~~~~A~-~~~~~al~ 247 (331)
++..++.++..+++..++. ..|.+.+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887 44554443
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-15 Score=108.11 Aligned_cols=120 Identities=17% Similarity=0.105 Sum_probs=113.4
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+.....++.+|.++...|++ ++|+.+|++++..+|.+..++..+|.++...|++++|+.+++++++..|.+ .++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 11 MNPDLALMVKNKGNECFQKGDY-PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSSCHHHHHHHHHHHHHHTTCS-HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4567788999999999999998 999999999999999999999999999999999999999999999999998 89999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+|.++..+| ++++|+.+++++++.+|.+..++..++.++...
T Consensus 90 la~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 90 KAAALEAMK--------DYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--------hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 999999887 499999999999999999999999999998865
No 135
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.62 E-value=1.8e-14 Score=121.60 Aligned_cols=162 Identities=12% Similarity=0.109 Sum_probs=132.9
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|..+.++..+|..+...|++++|+.+|+++++.+|++ .++.++|.++..+| ++++|+..++++++++|+++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELDGQSV 72 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHTTSCTTCH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCCCH
Confidence 5678899999999999999999999999999999988 89999999999887 49999999999999999999
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+++.+|.++... |++++|+..|+++++.. |+++..+........ ...++..+........|.+..
T Consensus 73 ~~~~~lg~~~~~~---------g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 138 (281)
T 2c2l_A 73 KAHFFLGQCQLEM---------ESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESE 138 (281)
T ss_dssp HHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCH
T ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHH
Confidence 9999999999999 99999999999999965 777655443333333 233334444445556777776
Q ss_pred H-HHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 255 T-EEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 255 ~-~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
. ..++.++ .|++++|++.+.++.++
T Consensus 139 i~~~l~~l~--~~~~~~A~~~~~~al~~ 164 (281)
T 2c2l_A 139 LHSYLTRLI--AAERERELEECQRNHEG 164 (281)
T ss_dssp HHHHHHHHH--HHHHHHHHTTTSGGGTT
T ss_pred HHHHHHHHH--HHHHHHHHHHHHhhhcc
Confidence 6 6666654 78999999888777654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=8.8e-15 Score=108.28 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=100.6
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.|..+.+++.+|.++...|++++|+.+|+++++..|.+ .++..+|.++...| ++++|+.+++++++.+|.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~a~~~~~~~ 83 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--------EFQLALKDCEECIQLEPTF 83 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--------CHHHHHHHHHHHHHHCTTC
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHhCCCc
Confidence 45667888888888888888888888888888888877 78888888888776 4888888888888888888
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.++..+|.++... |++++|+.+|++++... |.+..++..++.++..+|+
T Consensus 84 ~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 84 IKGYTRKAAALEAM---------KDYTKAMDVYQKALDLD--SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--GGGTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhcC
Confidence 88888888888888 88888888888888844 8888888888888877664
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=1.3e-14 Score=106.89 Aligned_cols=120 Identities=22% Similarity=0.171 Sum_probs=113.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
..+..+..++.+|..+...|++ ++|+.+|++++...|.++.++..+|.++...|++++|+.++.+++...|++ .++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 4456788899999999999998 999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS 187 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 187 (331)
+|.++...| ++++|+.+++++++.+|+++.++..+|.++...
T Consensus 86 ~~~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 127 (131)
T 2vyi_A 86 MGLALSSLN--------KHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127 (131)
T ss_dssp HHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--------CHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 999999887 499999999999999999999999999999877
No 138
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.60 E-value=2.4e-15 Score=128.69 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=129.9
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC----
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD---- 173 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---- 173 (331)
.|.+|...|++++|+.+|.+++++.+.. .++.++|.++..+| ++++|+.+|++++++.+..
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~~~~~~Al~l~~~~g~~~ 113 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQ--------RMPEAVQYIEKASVMYVENGTPD 113 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CGGGGHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHHHHcCCHH
Confidence 4788999999999999999999886532 57788999999887 4999999999999875432
Q ss_pred --chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 174 --GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 174 --~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
..++.++|.+|. . |++++|+.+|++++.......+ ..++.++|.++..+|++++|+.+|++++.
T Consensus 114 ~~a~~~~~lg~~~~---------~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 114 TAAMALDRAGKLME---------P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHHHHT---------T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357788888884 3 8999999999999985422222 46689999999999999999999999999
Q ss_pred cCCCCcH------H-HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 248 KDPSLNA------T-EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 248 ~~~~~~~------~-~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
+.|.+.. . ..++.++..+|++.+|+..+.++. +.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 8765431 3 667777777899999999998887 544
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.60 E-value=1.1e-14 Score=106.65 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=91.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
....++.+|..+...|++ ++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|++ .++..+|.+
T Consensus 16 ~~~~~~~~g~~~~~~g~~-~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 16 YHENPMEEGLSMLKLANL-AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 94 (121)
T ss_dssp GCSCHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 344578899999999998 999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN 175 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 175 (331)
+...| ++++|+..++++++.+|++..
T Consensus 95 ~~~~g--------~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 95 HTNEH--------NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHH--------HHHHHHHHHHHHHC-------
T ss_pred HHHcC--------CHHHHHHHHHHHHHhCcCCCC
Confidence 99775 699999999999999997653
No 140
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.60 E-value=3.6e-15 Score=112.53 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=102.9
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCC-------cHH-----HHHHHHHHHHHhCChhHHHHHHHHHHhc-
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPS-------LAD-----AWLCLGSCIWKKGDLPAAKNCFNLALSK- 128 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~- 128 (331)
..+..+..+|..++..|+| ++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+.+|++++++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~-eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEY-DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3466788999999999998 9999999999999999 444 9999999999999999999999999999
Q ss_pred ------CCCh-HHH----hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 129 ------GPNK-KIL----CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 129 ------~~~~-~~~----~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
+|++ .+| +++|.++..+| ++++|+.+|+++++++|++..+...+..+-
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lg--------r~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLG--------RGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCC--------CHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 9999 889 99999999997 499999999999999999887766555443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.60 E-value=9.4e-15 Score=107.57 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=104.4
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
+|..+.++..+|.++...|++++|+.+|++++...|++ .++..+|.++...| ++++|+.++.+++..+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--------NYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTC
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--------chHHHHHHHHHHHhcCccC
Confidence 45567788889999999999999999999999888877 78888888888776 4889999999998888888
Q ss_pred chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcH
Q 020060 174 GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENY 235 (331)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~ 235 (331)
+.++..+|.++... |++++|+.+|++++... |.++.++..+|.++..+|++
T Consensus 80 ~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 80 SKAYGRMGLALSSL---------NKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 88888999888888 88999999999988854 88888888888888888764
No 142
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.59 E-value=1.6e-13 Score=120.31 Aligned_cols=205 Identities=13% Similarity=0.010 Sum_probs=163.8
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN--------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.....++..+|.++...|++ ++|+.++++++.+. |....++..+|.++...|++++|..++++++...+..
T Consensus 90 ~~~~~~~~~la~~~~~~G~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFL-QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 34566688899999999998 99999999999874 3456778899999999999999999999999988753
Q ss_pred ------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHH-----HHHHHHHhhhhhcCCCChhhH
Q 020060 133 ------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWY-----NLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 ------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~-----~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++..+|.++...| ++++|..++++++.+.+. .+..+. .++.++... |++
T Consensus 169 ~~~~~~~~~~~la~~~~~~g--------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------g~~ 231 (373)
T 1hz4_A 169 QPQQQLQCLAMLIQCSLARG--------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT---------GDK 231 (373)
T ss_dssp CGGGGHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT---------TCH
T ss_pred CcHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC---------CCH
Confidence 45777899998776 599999999999876332 222222 233446666 999
Q ss_pred HHHHHHHHHHHhchhcCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc------HH-HHHHHHHHHHHHH
Q 020060 200 LQSLKAYQNAEKDERMKSN----PDLYFNCATVNKYLENYERALSGFEASALKDPSLN------AT-EEVQMMVNLLDKI 268 (331)
Q Consensus 200 ~~A~~~~~~al~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~------~~-~~l~~~~~~l~~~ 268 (331)
++|...+++++... +.+ ...+..+|.++...|++++|...+++++...+... .. ..++.++...|+.
T Consensus 232 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 309 (373)
T 1hz4_A 232 AAAANWLRHTAKPE--FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 309 (373)
T ss_dssp HHHHHHHHHSCCCC--CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCCCC--CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCH
Confidence 99999999998743 432 22468899999999999999999999988755422 23 6778899999999
Q ss_pred HHHHHhhhhhhhHHHHH
Q 020060 269 ENLLKGHAKTKRVASLA 285 (331)
Q Consensus 269 ~~a~~~~~~a~~l~~~~ 285 (331)
++|...+.++..+.+..
T Consensus 310 ~~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 310 SDAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998876643
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.59 E-value=2.6e-14 Score=121.34 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=141.7
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
+|.....+...+..+...|++++|+..+.++++..+.. ..++.+|.++...| ++++|+.++++++
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al 142 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--------CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHH
Confidence 34556677888999999999999999999999987754 23455777777665 4999999999999
Q ss_pred cCCCCC------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc-hhcCCCh----hHHhhHHHHHHHhhcHH
Q 020060 168 TLDVKD------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD-ERMKSNP----DLYFNCATVNKYLENYE 236 (331)
Q Consensus 168 ~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~----~~~~~la~~~~~~g~~~ 236 (331)
...+.. ..+++++|.+|... |++++|+.+|++++.. ...+.+. .+++++|.+|..+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~---------~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 876543 45889999999999 9999999999999953 1234433 57999999999999999
Q ss_pred HHHHHHHHHHhcCCCC------cHH-HHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHh
Q 020060 237 RALSGFEASALKDPSL------NAT-EEVQMMVNLLDKIENL-LKGHAKTKRVASLAS 286 (331)
Q Consensus 237 ~A~~~~~~al~~~~~~------~~~-~~l~~~~~~l~~~~~a-~~~~~~a~~l~~~~~ 286 (331)
+|+.+|++++.+.++. ... ..+|.++..+|++++| ...+.+|..+.....
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 9999999999875431 234 8899999999999999 677899887765543
No 144
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=4.1e-14 Score=127.55 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=145.4
Q ss_pred HHHHhhhhhhccc---ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----CChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 66 YEYLKGKILDVVP---EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----GDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 66 ~~~~~g~~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+++.+|.+|...| ++ ++|+.+|+++....|..+..++.+|.+|... +++++|+.+|+++. |.+ .++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~-~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQ-AELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHcCCcccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 7888999999888 86 8999999999999999888889999998766 78999999999987 666 88889
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
+|.++.... ..+++++|+.+|+++.+. .++.++++||.+|. . |.....++++|+.+|+++. ++
T Consensus 254 Lg~~~~~~~-----~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~----G~g~~~d~~~A~~~~~~Aa-----~g 316 (452)
T 3e4b_A 254 LAQLLYDFP-----ELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-E----GKWVPADAKAAEAHFEKAV-----GR 316 (452)
T ss_dssp HHHHHHHSG-----GGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-H----CSSSCCCHHHHHHHHHTTT-----TT
T ss_pred HHHHHHhCC-----CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-c----CCCCCCCHHHHHHHHHHHh-----CC
Confidence 998844111 124689999999998864 47888999998887 3 0011138899999999886 77
Q ss_pred ChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhh
Q 020060 218 NPDLYFNCATVNKY----LENYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTK 279 (331)
Q Consensus 218 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~ 279 (331)
++.+++++|.+|.. ..++++|+.+|+++.+. .++.+ ..++.++.. ..+..+|...|.+|.
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 88889999988876 34899999999998764 34555 777776642 234555665555544
No 145
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.59 E-value=4.5e-14 Score=127.30 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=153.0
Q ss_pred hHHHHHhhhhhhccccc---HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC---ChhHHHHHHHHHHhcCCCh-HHHh
Q 020060 64 ATYEYLKGKILDVVPEY---RKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG---DLPAAKNCFNLALSKGPNK-KILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~-~~~~ 136 (331)
+..++.+|.+|...+.+ .+.+..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+..|.. ..++
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~ 217 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVD 217 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44566667777666633 14455556555555554 9999999999999 9999999999999999887 6678
Q ss_pred hHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC
Q 020060 137 QLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK 216 (331)
Q Consensus 137 ~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 216 (331)
++|.++..... ..+++++|+.+|+++. |.++.+++++|.+|.... ..+++++|+.+|+++.. .
T Consensus 218 ~Lg~~y~~g~~----~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~------~~~d~~~A~~~~~~Aa~----~ 280 (452)
T 3e4b_A 218 SVARVLGDATL----GTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFP------ELGDVEQMMKYLDNGRA----A 280 (452)
T ss_dssp HHHHHHTCGGG----SSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSG------GGCCHHHHHHHHHHHHH----T
T ss_pred HHHHHHhCCCC----CCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHH----C
Confidence 99999864310 1135899999999998 999999999999944110 12899999999999986 7
Q ss_pred CChhHHhhHHHHHHHhh-----cHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHH----HHHHHHHHHhhhhhhh
Q 020060 217 SNPDLYFNCATVNKYLE-----NYERALSGFEASALKDPSLNAT-EEVQMMVNL----LDKIENLLKGHAKTKR 280 (331)
Q Consensus 217 ~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~----l~~~~~a~~~~~~a~~ 280 (331)
+++.+++++|.+|. .| ++++|+.+|+++. +.++.+ ..+|.++.. ..++.+|+..|.+|.+
T Consensus 281 g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 281 DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 79999999999998 66 9999999999999 888888 999988765 2378888888887765
No 146
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.58 E-value=4.6e-14 Score=105.25 Aligned_cols=99 Identities=17% Similarity=0.253 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 96 PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 96 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|..+..+..+|.++...|++++|+.+|++++..+|++ .++..+|.++..+| ++++|+..++++++++|+++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQALADCRRALELDGQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCchhH
Confidence 3444444444444444444444444444444444444 44444444444443 24444444444444444444
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
.+|+.+|.++... |++++|+..|++++.
T Consensus 78 ~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 78 KAHFFLGQCQLEM---------ESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHHT---------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------hhHHHHHHHHHHHHH
Confidence 4444444444444 444444444444444
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=1.9e-14 Score=106.34 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=91.9
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.++.++|.+++..| ++++|+.+|+++++++|+++.+|.++|.+|..+ |++++|+..|+++++.
T Consensus 9 ~a~~~lG~~~~~~~--------~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~---------~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 9 IAEKDLGNAAYKQK--------DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEE---------KKFAECVQFCEKAVEV 71 (127)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHh---------hhHHHHHHHHHHHHHh
Confidence 46778999999887 499999999999999999999999999999999 9999999999999985
Q ss_pred hhcCCCh-------hHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 213 ERMKSNP-------DLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 213 ~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
. |.++ .++.++|.++..+|++++|+.+|++++...|+.
T Consensus 72 ~--~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 72 G--RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp H--HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred C--cccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 5 6553 468999999999999999999999999998874
No 148
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.58 E-value=1.7e-14 Score=111.20 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=107.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc------------------CCCcHHHHHHHHHHHHHhCChhHHHHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL------------------NPSLADAWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
...+..+..+|..++..|+| ++|+.+|.+++.+ +|..+.++.++|.+|...|++++|+.++
T Consensus 8 ~~~a~~~~~~G~~~~~~~~~-~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~ 86 (162)
T 3rkv_A 8 LKSVEALRQKGNELFVQKDY-KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETS 86 (162)
T ss_dssp CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35677899999999999998 9999999999999 7777899999999999999999999999
Q ss_pred HHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHhh
Q 020060 123 NLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG-NSWYNLGNACLTS 187 (331)
Q Consensus 123 ~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~ 187 (331)
.++++++|++ .+++.+|.++..+| ++++|+..|++++.++|+++ .+...++.+....
T Consensus 87 ~~al~~~p~~~~a~~~~g~~~~~~g--------~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 87 SEVLKREETNEKALFRRAKARIAAW--------KLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHh--------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999997 49999999999999999998 6677777766554
No 149
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.57 E-value=2.1e-15 Score=136.77 Aligned_cols=128 Identities=12% Similarity=0.070 Sum_probs=116.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
..+..++.+|..+...|+| ++|+.+|+++++++|+++.++.++|.+|...|++++|+.+|+++++++|++ .+++++|.
T Consensus 4 ~~a~~~~~lg~~~~~~g~~-~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDY-ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566678899999999998 999999999999999999999999999999999999999999999999998 89999999
Q ss_pred HHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHH--HHhhhhhcCCCChhhHHHHHHHHH
Q 020060 141 LERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 141 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
++..+| ++++|+..++++++++|+++.++..++.+ +... |++++|+..++
T Consensus 83 ~~~~~g--------~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~---------g~~~~A~~~~~ 134 (477)
T 1wao_1 83 SNMALG--------KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ---------KAFERAIAGDE 134 (477)
T ss_dssp HHHHHT--------CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHH---------HHHCCC-----
T ss_pred HHHHcC--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---------HHHHHHhcccc
Confidence 999887 49999999999999999999999999998 7777 99999999999
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.57 E-value=8.8e-14 Score=100.34 Aligned_cols=113 Identities=19% Similarity=0.090 Sum_probs=106.4
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHH
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSML 141 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~ 141 (331)
.+..++.+|..+...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+++++++..|++ .++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNI-DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 456788999999999998 999999999999999999999999999999999999999999999999998 889999999
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
+..+| ++++|...++++++.+|+++.++..++.+.
T Consensus 82 ~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLN--------RFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTT--------CHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHh--------hHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 99887 499999999999999999999998888764
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=2.4e-15 Score=124.84 Aligned_cols=189 Identities=13% Similarity=0.066 Sum_probs=155.9
Q ss_pred HHHHHHhcCCCCCCCCCcchhhHHHHHh-------hhhhhcccccHHHHHHHHHHHHhcCCCcHH---------------
Q 020060 43 DLALRLLGSVPPEQRKSPTQRATYEYLK-------GKILDVVPEYRKDAEDHLSKAVKLNPSLAD--------------- 100 (331)
Q Consensus 43 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------- 100 (331)
..|.+.|..... ..+..+..|..+ +.++...+++ .+++..+++.+.+.|....
T Consensus 23 ~~A~~~F~~a~~----~dP~~~Daw~g~~a~g~~~~~~L~~~~r~-~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 23 ARSLDLFTEITN----YDESACDAWIGRIRCGDTDRVTLFRAWYS-RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp HHHHHHHHHHHH----HCTTCHHHHHHHHHTTCCCHHHHHHHHHT-GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred HHHHHHHHHHHH----hChhhhHHHHhHHHccCCcHHHHHHHHHH-HHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 445555555443 345778899998 8899999996 8999999999998876543
Q ss_pred ------HHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-C
Q 020060 101 ------AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK-D 173 (331)
Q Consensus 101 ------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-~ 173 (331)
++..++.++...|+|++|...|..++...|.+...+.+|.++...+ ++++|+..|+.+....+. .
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~--------r~~dA~~~l~~a~~~~d~~~ 169 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAE--------RWTDVIDQVKSAGKWPDKFL 169 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTT--------CHHHHHHHHTTGGGCSCHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcC--------CHHHHHHHHHHhhccCCccc
Confidence 4445889999999999999999999998887778888999999776 599999999988775322 1
Q ss_pred -chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 174 -GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 174 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..+++.+|.++..+ |++++|+.+|++++.....|. .+++++++|.++..+|+.++|...|++++..+|+
T Consensus 170 ~~~a~~~LG~al~~L---------G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 170 AGAAGVAHGVAAANL---------ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 35899999999999 999999999999985321144 5678999999999999999999999999999998
Q ss_pred CcH
Q 020060 252 LNA 254 (331)
Q Consensus 252 ~~~ 254 (331)
..
T Consensus 241 -~~ 242 (282)
T 4f3v_A 241 -PK 242 (282)
T ss_dssp -HH
T ss_pred -HH
Confidence 54
No 152
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.56 E-value=2.9e-14 Score=104.35 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=88.3
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..++.+|.++...| ++++|+..++++++.+|+++.+|+.+|.++... |++++|+..|+++++.
T Consensus 18 ~~~~~~g~~~~~~g--------~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~---------g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 18 ENPMEEGLSMLKLA--------NLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN---------EKDGLAIIALNHARML 80 (121)
T ss_dssp SCHHHHHHHHHHTT--------CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHh
Confidence 45677888888776 499999999999999999999999999999998 9999999999999995
Q ss_pred hhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 213 ERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 213 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
+ |+++.+++++|.++...|++++|+.+|+++++++|++.
T Consensus 81 ~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 81 D--PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp C--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 5 99999999999999999999999999999999999864
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.56 E-value=2.3e-14 Score=108.12 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC-------h-H-----HHhhHHHHHHHhccCchhHHHHHHHHHHHHH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-------K-K-----ILCQLSMLERSMAQGSENQAEIVEESIQHAK 164 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------~-~-----~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~ 164 (331)
.+..+..+|..++..|+|++|+.+|+++++++|+ + . +|.++|.++..+| ++++|+.++.
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--------r~~eAl~~~~ 81 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--------SFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--------CHHHHHHHHH
Confidence 3567899999999999999999999999999998 4 2 8999999999997 4999999999
Q ss_pred HHhcC-------CCCCchhH----HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 165 EAITL-------DVKDGNSW----YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 165 ~al~~-------~p~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
+++++ +|+++.+| +++|.++..+ |++++|+.+|++++++. |++......+..+-.
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l---------gr~eEAl~~y~kAlel~--p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGL---------GRGAEAMPEFKKVVEMI--EERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHH--HHCCSCCTTHHHHHH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC---------CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHH
Confidence 99988 88888888 8888888888 88888888888888855 777766655554433
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=4.6e-14 Score=105.26 Aligned_cols=117 Identities=21% Similarity=0.116 Sum_probs=106.3
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLS 139 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~ 139 (331)
+..+..++.+|.++...|+| ++|+.+|.+++..+|+++.++..+|.++...|++++|+.+|+++++++|++ .+++.+|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKY-PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcH-HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45678899999999999998 999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHh
Q 020060 140 MLERSMAQGSENQAEIVEESIQHAKEAITLDVK-----DGNSWYNLGNACLT 186 (331)
Q Consensus 140 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~~~~~~ 186 (331)
.++..+| ++++|+..++++++++|+ +..++..+..+...
T Consensus 85 ~~~~~~~--------~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 85 QCQLEME--------SYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHTT--------CHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHh--------hHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999887 499999999999999988 56666666665543
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.56 E-value=5.8e-14 Score=126.67 Aligned_cols=127 Identities=16% Similarity=0.122 Sum_probs=115.0
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---------------HHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---------------ADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
+..+..+..+|..++..|+| ++|+.+|++++.++|.+ ..+|.++|.||...|++++|+.+|+++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKY-MQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35577899999999999998 99999999999999998 689999999999999999999999999
Q ss_pred HhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 126 LSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 126 l~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
++++|++ .+++++|.++..+| ++++|+..|+++++++|++..++..++.++... +++++|..
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g--------~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~---------~~~~~a~~ 406 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMN--------EFESAKGDFEKVLEVNPQNKAARLQISMCQKKA---------KEHNERDR 406 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTC----CHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 9999999 99999999999987 499999999999999999999999999999998 88887765
Q ss_pred H
Q 020060 205 A 205 (331)
Q Consensus 205 ~ 205 (331)
.
T Consensus 407 ~ 407 (457)
T 1kt0_A 407 R 407 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 156
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.56 E-value=1.3e-13 Score=100.42 Aligned_cols=113 Identities=29% Similarity=0.399 Sum_probs=58.5
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE 142 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~ 142 (331)
...++.+|.++...|++ ++|+.+|.+++...|.+..++..+|.++...|++++|+.+|++++...|.+ ..+..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44455555555555554 555555555555555555555555555555555555555555555555544 4444455555
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
...| ++++|+..++++++.+|.++.++..++.++.
T Consensus 88 ~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 88 YKQG--------DYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhc--------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 5443 2555555555555555555555555544443
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.55 E-value=1.3e-13 Score=100.54 Aligned_cols=101 Identities=25% Similarity=0.353 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+++++|+..+..... ..+....+++.+|.++...|++ ++|+.++++++...|.++.++..+|.++...|++++|+
T Consensus 23 ~~~~~A~~~~~~~~~----~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (125)
T 1na0_A 23 GDYDEAIEYYQKALE----LDPNNAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 97 (125)
T ss_dssp TCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH----HCcCcHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH
Confidence 556677777777654 2334566788888888888887 88888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 120 NCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 120 ~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
.+|+++++.+|++ .++..++.++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 98 EYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 8888888888877 7777777776644
No 158
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.55 E-value=1e-13 Score=117.67 Aligned_cols=170 Identities=10% Similarity=-0.005 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-H------HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-K------ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~------~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+...+..+...|++++|...+++++...+.. . .+..+|.++...| ++++|+.++++++...+..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~Ai~~~~~al~~~~~~ 148 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--------CHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--------CHHHHHHHHHHHHHHhccc
Confidence 34456788899999999999999999977655 1 2224677776554 4999999999999975544
Q ss_pred ch------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch-----hcCCChhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 174 GN------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE-----RMKSNPDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 174 ~~------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
.. ++.++|.+|... |++++|+.+|+++++.. ..+....+++++|.+|..+|++++|+.++
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~---------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~ 219 (293)
T 3u3w_A 149 IDVYQNLYIENAIANIYAEN---------GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQV 219 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33 689999999999 99999999999999521 11223456999999999999999999999
Q ss_pred HHHHhcCCCC------cHH-HHHHHHHHHHHH-HHHHHHhhhhhhhHHHHHhh
Q 020060 243 EASALKDPSL------NAT-EEVQMMVNLLDK-IENLLKGHAKTKRVASLASS 287 (331)
Q Consensus 243 ~~al~~~~~~------~~~-~~l~~~~~~l~~-~~~a~~~~~~a~~l~~~~~~ 287 (331)
++++.+.+.. ... ..+|.++..+|+ +++|++.+.+|..+......
T Consensus 220 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~ 272 (293)
T 3u3w_A 220 NKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEM 272 (293)
T ss_dssp HHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 9999876543 334 889999999994 69999999999988776544
No 159
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.55 E-value=5e-14 Score=108.55 Aligned_cols=140 Identities=15% Similarity=0.134 Sum_probs=104.0
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
.+..+..+|..++..|+|++|+.+|.+++.+.+..... .... +.+ ....+|.+..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~----------~~~~-----~~~--------~~~~~~~~~~~~ 66 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR----------EKPG-----EPE--------WVELDRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT----------SCTT-----SHH--------HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc----------CCCC-----HHH--------HHHHHHHHHHHH
Confidence 36788999999999999999999999999873221000 0000 000 012346667788
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc-HH-
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN-AT- 255 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~- 255 (331)
.++|.++..+ |++++|+..+++++..+ |.++.+|+.+|.++..+|++++|+.+|++++.++|++. ..
T Consensus 67 ~nla~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 135 (162)
T 3rkv_A 67 ANMSQCYLNI---------GDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVA 135 (162)
T ss_dssp HHHHHHHHHH---------TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHhc---------CcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8888888888 88999999999998855 88888899999999999999999999999999998887 43
Q ss_pred HHHHHHHHHHHHHHHH
Q 020060 256 EEVQMMVNLLDKIENL 271 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a 271 (331)
..++.+...+.+..+.
T Consensus 136 ~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 136 REMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666665554433
No 160
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.54 E-value=4.3e-13 Score=112.69 Aligned_cols=188 Identities=10% Similarity=0.024 Sum_probs=149.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC-----hHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP--SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN-----KKILC 136 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~ 136 (331)
...++.+|.++...|++ ++|+..+.+++..+| +..+++..++.++...|+.+.|.+.+++..+.+|+ +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~-eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~ 178 (310)
T 3mv2_B 100 PYELYLLATAQAILGDL-DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMIL 178 (310)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHH
Confidence 34457899999999997 999999999999997 88999999999999999999999999999999993 56666
Q ss_pred hHHHH--HHHhccCchhHHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 137 QLSML--ERSMAQGSENQAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 137 ~l~~~--~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
.++.. ....|. +++.+|..+|+++.+..|+ .+..+++ ++..+ |++++|...++.+++.
T Consensus 179 ~Laea~v~l~~g~------~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~---------g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 179 NLAESYIKFATNK------ETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQ---------RNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHTC------STTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHH---------TCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHhCC------ccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHc---------CCHHHHHHHHHHHHHh
Confidence 66655 443331 2699999999999988886 2333333 78888 9999999999977763
Q ss_pred h--------hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhh
Q 020060 213 E--------RMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 213 ~--------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
. ..|++++++.|+..+...+|+ +|.+++.++.+.+|+++....+. .....++++...|
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~---~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ---EIDAKFDELVRKY 306 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH---HHHHHHHHHHHHh
Confidence 1 038899999999999999998 99999999999999998643222 2334444444433
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.53 E-value=2.5e-15 Score=136.28 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=122.2
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
.+.++..+|.++...|++++|+.+|+++++++|++ .++.++|.++..+| ++++|+..++++++++|+++.+
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~l~p~~~~~ 76 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYALGDATRAIELDKKYIKG 76 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHhCCCCHHH
Confidence 34567778899999999999999999999999998 89999999999887 4999999999999999999999
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH--HHHhhcHHHHHHHHH-----------
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV--NKYLENYERALSGFE----------- 243 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~----------- 243 (331)
++++|.+|..+ |++++|+..|+++++.. |+++.++.+++.+ +...|++++|+..++
T Consensus 77 ~~~lg~~~~~~---------g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 145 (477)
T 1wao_1 77 YYRRAASNMAL---------GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDI 145 (477)
T ss_dssp HHHHHHHHHHH---------TCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTT
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhh
Confidence 99999999999 99999999999999955 9999999999999 889999999999999
Q ss_pred HHHhcCCCCcH
Q 020060 244 ASALKDPSLNA 254 (331)
Q Consensus 244 ~al~~~~~~~~ 254 (331)
+++.++|+...
T Consensus 146 ~al~~~~~~~~ 156 (477)
T 1wao_1 146 ESMTIEDEYSG 156 (477)
T ss_dssp SSCCCCTTCCS
T ss_pred hhccccccccc
Confidence 88888876543
No 162
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.53 E-value=1e-13 Score=104.34 Aligned_cols=92 Identities=13% Similarity=0.185 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhH----------HHHHHHHHHHHhchhcCCChhH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKL----------LQSLKAYQNAEKDERMKSNPDL 221 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~ 221 (331)
+.+.+++|++.++++++++|+++.+|+++|.++... +++ ++|+..|+++++++ |+++.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l---------~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A 82 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLEL---------SQFHSISDAKQMIQEAITKFEEALLID--PKKDEA 82 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------HHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh---------cccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHH
Confidence 556799999999999999999999999999999988 664 69999999999966 999999
Q ss_pred HhhHHHHHHHhh-----------cHHHHHHHHHHHHhcCCCCcH
Q 020060 222 YFNCATVNKYLE-----------NYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 222 ~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~ 254 (331)
|+++|.+|..+| ++++|+.+|++|++++|++..
T Consensus 83 ~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 83 VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 999999999885 899999999999999999853
No 163
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=3.5e-14 Score=123.05 Aligned_cols=139 Identities=13% Similarity=0.118 Sum_probs=92.3
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHhCChhHHHHHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-----------------DAWLCLGSCIWKKGDLPAAKNCFNL 124 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (331)
..+..++.+|..++..|+| ++|+.+|++++.+.|.+. .++.++|.+|...|++++|+.+|++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~-~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKL-EEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCC-HHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4577899999999999999 999999999999999876 4899999999999999999999999
Q ss_pred HHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 125 ALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 125 al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
+++++|++ .+++++|.++..+| ++++|+..|+++++++|+++.++..++.+.... .+..+++.
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g--------~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~--------~~~~~~a~ 319 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELG--------QMDSARDDFRKAQKYAPDDKAIRRELRALAEQE--------KALYQKQK 319 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTT--------CHHHHHHHHHHTTC-----------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--------HHHHHHHH
Confidence 99999998 99999999999987 499999999999999999999999999885433 16778888
Q ss_pred HHHHHHHhchhcCCCh
Q 020060 204 KAYQNAEKDERMKSNP 219 (331)
Q Consensus 204 ~~~~~al~~~~~~~~~ 219 (331)
..|.+++... |.++
T Consensus 320 ~~~~~~l~~~--p~~~ 333 (338)
T 2if4_A 320 EMYKGIFKGK--DEGG 333 (338)
T ss_dssp ----------------
T ss_pred HHHHHhhCCC--CCCC
Confidence 8999888744 6554
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=3.6e-13 Score=97.07 Aligned_cols=111 Identities=14% Similarity=0.206 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSW 177 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 177 (331)
+..++.+|.++...|++++|+.+|++++...|.+ .++..+|.++...| ++++|+..++++++.+|+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--------DYQKAYEDGCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHhCcccHHHH
Confidence 4556666666666666666666666666666655 55666666666554 36666666666666666666666
Q ss_pred HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHH
Q 020060 178 YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATV 228 (331)
Q Consensus 178 ~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~ 228 (331)
..+|.++... |++++|+..+++++... |.++.++..++.+
T Consensus 76 ~~~a~~~~~~---------~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFL---------NRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHT---------TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHH---------hhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 6666666665 66666666666666533 6666655555544
No 165
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.51 E-value=7.6e-13 Score=129.02 Aligned_cols=206 Identities=10% Similarity=0.032 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK 119 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 119 (331)
+.+++|.+..+++. ...+|+.+|.++...|++ ++|+.+|.++ +++..|..+|.++.+.|++++|+
T Consensus 1090 ~nldrAiE~Aervn---------~p~vWsqLAKAql~~G~~-kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred hhHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCCH-HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666543 367899999999999998 9999999886 88999999999999999999999
Q ss_pred HHHHHHHhcCCCh----------------------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC
Q 020060 120 NCFNLALSKGPNK----------------------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV 171 (331)
Q Consensus 120 ~~~~~al~~~~~~----------------------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p 171 (331)
++|..+.+..++. ..+..+|..+...| ++++|..+|.++
T Consensus 1155 eyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg--------~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK--------MYDAAKLLYNNV----- 1221 (1630)
T ss_pred HHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHhh-----
Confidence 9999988766442 12334555555443 588999998875
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-----------------------cCCChhHHhhHHHH
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-----------------------MKSNPDLYFNCATV 228 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----------------------~~~~~~~~~~la~~ 228 (331)
..|..++.++..+ |++++|++.++++..... ...+++.+..++..
T Consensus 1222 ---~ny~rLA~tLvkL---------ge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 ---SNFGRLASTLVHL---------GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 1289 (1630)
T ss_pred ---hHHHHHHHHHHHh---------CCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence 4788999999998 999999999998864220 01255567788889
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHH--HHHHHHHHHHHhhhhhhhHHHHH
Q 020060 229 NKYLENYERALSGFEASALKDPSLNAT-EEVQMMV--NLLDKIENLLKGHAKTKRVASLA 285 (331)
Q Consensus 229 ~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~--~~l~~~~~a~~~~~~a~~l~~~~ 285 (331)
|...|.|++|+.++++++.++|.+... ..++.++ ...++..+.++.|.....+.+++
T Consensus 1290 Ye~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~ 1349 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVL 1349 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHh
Confidence 999999999999999999999888776 5555444 55677777788888777665543
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.51 E-value=1.2e-14 Score=125.89 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 95 NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 95 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
.+..+..+..+|.+++..|++++|+.+|++++.+.|.+..+... +++.++...+. .
T Consensus 175 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~---------------~~~~~~~~~l~---------~ 230 (338)
T 2if4_A 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLY---------------GKYQDMALAVK---------N 230 (338)
T ss_dssp HHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCC---------------HHHHHHHHHHH---------T
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhc---------------ccHHHHHHHHH---------H
Confidence 34457889999999999999999999999999999986421111 11233322221 1
Q ss_pred hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 175 NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.+|+++|.++..+ |++++|+.+|++++... |.++.+|+++|.++..+|++++|+.+|++++.++|++..
T Consensus 231 ~~~~nla~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~ 299 (338)
T 2if4_A 231 PCHLNIAACLIKL---------KRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA 299 (338)
T ss_dssp HHHHHHHHHHHTT---------TCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH
Confidence 2455555555555 55555555555555533 555555555555555555555555555555555555555
Q ss_pred H-HHHHHHHH-HHHHHHHHHHhhhhhhh
Q 020060 255 T-EEVQMMVN-LLDKIENLLKGHAKTKR 280 (331)
Q Consensus 255 ~-~~l~~~~~-~l~~~~~a~~~~~~a~~ 280 (331)
. ..++.+.. ..+...++.+.|.++..
T Consensus 300 a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 300 IRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4 44444422 22333333344444443
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.3e-13 Score=101.06 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=108.4
Q ss_pred cchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 60 PTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
.+..+..++.+|..+...|+| ++|+.+|++++..+|++ ..++..+|.++...|++++|+.+++++++..|++ .++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDY-GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCH-HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 346678899999999999998 99999999999999998 8999999999999999999999999999999988 899
Q ss_pred hhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 020060 136 CQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL 185 (331)
Q Consensus 136 ~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 185 (331)
+.+|.++..+| ++++|+.+++++++.+|++..++..++.+..
T Consensus 103 ~~~a~~~~~~~--------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 103 YRRSQALEKLG--------RLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHT--------CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 99999999887 4999999999999999999999888877654
No 168
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.50 E-value=1.3e-13 Score=103.69 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCCh----------hHHHHHHHHHHhcCCCh-HHHhhHHHHHHH
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDL----------PAAKNCFNLALSKGPNK-KILCQLSMLERS 144 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~-~~~~~l~~~~~~ 144 (331)
..+.| ++|+..++++++++|+++++|.++|.++...+++ ++|+..|+++++++|++ .+|+++|.++..
T Consensus 14 r~~~f-eeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLF-EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34566 9999999999999999999999999999999876 49999999999999999 999999999998
Q ss_pred hccC---chhHHHHHHHHHHHHHHHhcCCCCCchhHHHH
Q 020060 145 MAQG---SENQAEIVEESIQHAKEAITLDVKDGNSWYNL 180 (331)
Q Consensus 145 ~g~~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 180 (331)
+|.. .....+++++|+.+|++|++++|++...+..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 7511 00123579999999999999999986544443
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.48 E-value=3.9e-13 Score=117.78 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=115.8
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHh----------------cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVK----------------LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~----------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
..+..+..+|..+...|+| ++|+.+|+++++ .+|..+.++.++|.+|...|++++|+.+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~-~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNW-EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3456788999999999998 999999999999 77888999999999999999999999999999
Q ss_pred HhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 126 LSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 126 l~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
++++|++ .+++.+|.++..+| ++++|+..|+++++++|++..++..++.++... ++++++..
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g--------~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~---------~~~~~a~k 362 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLK--------EYDQALADLKKAQEIAPEDKAIQAELLKVKQKI---------KAQKDKEK 362 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 9999998 99999999999887 499999999999999999999999999999988 88877654
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=8.7e-13 Score=99.35 Aligned_cols=117 Identities=17% Similarity=0.107 Sum_probs=88.7
Q ss_pred cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 94 LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 94 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
..|..+..++.+|.++...|++++|+.+|+++++..|++ .++..+|.++...| ++++|+..++++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--------DYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--------cHHHHHHHHHHHHhh
Confidence 456778888888998888899999999998888888874 56667777777665 377777777777777
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHH
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVN 229 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~ 229 (331)
+|+++.+++.+|.++... |++++|+.+|++++... |.++.++..++.+.
T Consensus 95 ~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKL---------GRLDQAVLDLQRCVSLE--PKNKVFQEALRNIS 143 (148)
T ss_dssp TSCCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHH
Confidence 777777777777777777 77777777777777744 77777666666554
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.46 E-value=8.2e-13 Score=115.70 Aligned_cols=140 Identities=15% Similarity=0.163 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
+..+..+|..+...|++++|+.+|++++++.+... +.....+....+|.+..+|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~ 277 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-------------------------AAAEDADGAKLQPVALSCVL 277 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-------------------------HHSCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-------------------------cccChHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999998644321 01113334455666777888
Q ss_pred HHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HH
Q 020060 179 NLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EE 257 (331)
Q Consensus 179 ~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~ 257 (331)
++|.++..+ |++++|+.+++++++.. |.++.+++++|.++..+|++++|+.+|+++++++|++... ..
T Consensus 278 nla~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~ 346 (370)
T 1ihg_A 278 NIGACKLKM---------SDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHT---------TCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhc---------cCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 888888877 88888888888888754 8888888888888888888888888888888888887776 77
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020060 258 VQMMVNLLDKIENLLKG 274 (331)
Q Consensus 258 l~~~~~~l~~~~~a~~~ 274 (331)
++.++..+++..++.+.
T Consensus 347 l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77888777777777643
No 172
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.46 E-value=6e-13 Score=97.81 Aligned_cols=117 Identities=17% Similarity=0.280 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC---
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--- 173 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--- 173 (331)
.+.+++.+|.++...|++++|+.+|.+++...|.+ .++..+|.++...| ++++|+.++++++...|.+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCRELCEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHhhccccchh
Confidence 34556666666666666666666666666666665 56666666666554 3666666666666665554
Q ss_pred ----chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhc
Q 020060 174 ----GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLEN 234 (331)
Q Consensus 174 ----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~ 234 (331)
+.++..+|.++... |++++|+.+|++++... | ++..+..++.+....++
T Consensus 75 ~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKE---------EKYKDAIHFYNKSLAEH--R-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHHhC--C-CHHHHHHHHHHHHHHHH
Confidence 66778888888888 88888888888888743 6 67777777777665543
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=4.6e-13 Score=95.62 Aligned_cols=106 Identities=17% Similarity=0.183 Sum_probs=98.2
Q ss_pred CCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHH
Q 020060 129 GPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQ 207 (331)
Q Consensus 129 ~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~ 207 (331)
+|++ ..+..+|.++...| ++++|+.+++++++.+|.++.++..+|.++... |++++|+..|+
T Consensus 2 ~p~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~ 64 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAG--------NYTESIDLFEKAIQLDPEESKYWLMKGKALYNL---------ERYEEAVDCYN 64 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSC--------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT---------TCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHc---------cCHHHHHHHHH
Confidence 5666 78899999999887 499999999999999999999999999999999 99999999999
Q ss_pred HHHhchhcCC--ChhHHhhHHHHHHHh-hcHHHHHHHHHHHHhcCCCCc
Q 020060 208 NAEKDERMKS--NPDLYFNCATVNKYL-ENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 208 ~al~~~~~~~--~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~ 253 (331)
++++.. |. ++.++.++|.++... |++++|+.++++++...|.+.
T Consensus 65 ~a~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 65 YVINVI--EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTS--CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhC--cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 999955 88 999999999999999 999999999999999999764
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.45 E-value=9.3e-13 Score=100.43 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC-
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK- 172 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~- 172 (331)
++..+|.++...|++++|+.++++++++.+.. .++..+|.++...| ++++|+.++++++...+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--------EFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444433221 23444444444443 245555555554443322
Q ss_pred -----CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC----ChhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 173 -----DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS----NPDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 173 -----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
...++..+|.++... |++++|+.++++++....... .+.++.++|.++...|++++|..+++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLL---------QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 145778899999988 999999999999997432222 24568999999999999999999999
Q ss_pred HHHhcCCCC
Q 020060 244 ASALKDPSL 252 (331)
Q Consensus 244 ~al~~~~~~ 252 (331)
+++.+....
T Consensus 154 ~a~~~~~~~ 162 (164)
T 3ro3_A 154 KHLEISREV 162 (164)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 999876543
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=1.1e-12 Score=96.62 Aligned_cols=110 Identities=16% Similarity=0.101 Sum_probs=99.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----HHHhhH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA---DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK----KILCQL 138 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~l 138 (331)
.++.+|..+...|+| ++|+..|++++..+|+++ .+++.+|.++...|++++|+.+|++++...|++ .+++.+
T Consensus 4 ~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKY-DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCH-HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 467899999999998 999999999999999988 899999999999999999999999999999986 568899
Q ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 020060 139 SMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNAC 184 (331)
Q Consensus 139 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 184 (331)
|.++..+| ++++|+..+++++...|+++.+...+..+-
T Consensus 83 a~~~~~~g--------~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 83 GLSQYGEG--------KNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHHHHTT--------CHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHHHHcC--------CHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999887 499999999999999999887766555443
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.45 E-value=8.6e-13 Score=105.05 Aligned_cols=137 Identities=12% Similarity=0.188 Sum_probs=116.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc---C
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK------LNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK---G 129 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~ 129 (331)
.+...+.++..+|.++...|++ ++|+.++++++. ..|..+.++..+|.++...|++++|+.++++++.+ .
T Consensus 21 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 21 HPATASGARFMLGYVYAFMDRF-DEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp STTTHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 3346788999999999999998 999999999999 44556789999999999999999999999999988 3
Q ss_pred CC---h--HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC------chhHHHHHHHHHhhhhhcCCCChhh
Q 020060 130 PN---K--KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD------GNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 130 ~~---~--~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
++ . .++..+|.++..+| ++++|+.++++++...+.. ..++..+|.++... |+
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---------g~ 162 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFG--------DLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE---------KN 162 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TC
T ss_pred CccHHHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC---------cC
Confidence 32 2 56888999999887 4999999999999764322 23468899999998 99
Q ss_pred HHHHHHHHHHHHhch
Q 020060 199 LLQSLKAYQNAEKDE 213 (331)
Q Consensus 199 ~~~A~~~~~~al~~~ 213 (331)
+++|+.++++++...
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999854
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=4.6e-13 Score=95.59 Aligned_cols=104 Identities=18% Similarity=0.282 Sum_probs=97.1
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC--h-HHHhhH
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN--K-KILCQL 138 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~-~~~~~l 138 (331)
..+.+++.+|.++...|++ ++|+.+|+++++.+|.+..++..+|.++...|++++|+.+|+++++..|. + .++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNY-TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3456788999999999998 99999999999999999999999999999999999999999999999999 7 899999
Q ss_pred HHHHHHh-ccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 139 SMLERSM-AQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 139 ~~~~~~~-g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
|.++..+ |+ +++|++++++++...|.++
T Consensus 83 ~~~~~~~~~~--------~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGK--------EVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSC--------SHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCC--------HHHHHHHHHHHhhcccCCC
Confidence 9999988 84 9999999999999998764
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=1.6e-12 Score=95.60 Aligned_cols=103 Identities=10% Similarity=0.050 Sum_probs=95.0
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
.++.+|.++...| ++++|+..++++++.+|+++ .+++.+|.++... |++++|+..|++++
T Consensus 4 ~~~~~a~~~~~~~--------~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~~~ 66 (129)
T 2xev_A 4 TAYNVAFDALKNG--------KYDDASQLFLSFLELYPNGVYTPNALYWLGESYYAT---------RNFQLAEAQFRDLV 66 (129)
T ss_dssp CHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--------CHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHh---------ccHHHHHHHHHHHH
Confidence 4677888888776 59999999999999999998 7999999999999 99999999999999
Q ss_pred hchhcCCC---hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 211 KDERMKSN---PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 211 ~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
... |++ +.+++.+|.++..+|++++|+.+|++++...|++...
T Consensus 67 ~~~--p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 67 SRY--PTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHC--TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHC--CCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 954 888 8889999999999999999999999999999998765
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.43 E-value=2.2e-12 Score=94.67 Aligned_cols=115 Identities=13% Similarity=0.087 Sum_probs=101.2
Q ss_pred HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc
Q 020060 133 KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD 212 (331)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 212 (331)
..+..+|.++...| ++++|+.++++++..+|.++.++..+|.++... |++++|+.++++++..
T Consensus 5 ~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 5 LKEKELGNDAYKKK--------DFDTALKHYDKAKELDPTNMTYITNQAAVYFEK---------GDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh---------ccHHHHHHHHHHHHhh
Confidence 56788999999876 499999999999999999999999999999999 9999999999999985
Q ss_pred hhcCCC-------hhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHH
Q 020060 213 ERMKSN-------PDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 213 ~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~ 267 (331)
. |.+ +.+++++|.++...|++++|..+|++++...|+ ... ..++.+...+++
T Consensus 68 ~--~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 68 G--RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE 127 (131)
T ss_dssp H--HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred c--cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 5 665 788999999999999999999999999999995 444 666666655544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.43 E-value=1.9e-13 Score=99.23 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHH
Q 020060 154 EIVEESIQHAKEAITL---DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNK 230 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~ 230 (331)
|++++|+.+|+++++. +|+++.++..+|.++... |++++|+.+|+++++.. |+++.+++++|.++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTL---------GEYRKAEAVLANGVKQF--PNHQALRVFYAMVLY 72 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHH
Confidence 5799999999999999 699999999999999999 99999999999999955 999999999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 231 YLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 231 ~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+|++++|+.+|++++...|+++..
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETI 97 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999998753
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.41 E-value=1.5e-13 Score=99.78 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=82.9
Q ss_pred cccccHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchh
Q 020060 76 VVPEYRKDAEDHLSKAVKL---NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSEN 151 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~ 151 (331)
..|++ ++|+.+|++++++ +|+++.++..+|.+|...|++++|+.+|+++++.+|++ .+++.+|.++..+|
T Consensus 2 ~~g~~-~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g----- 75 (117)
T 3k9i_A 2 VLGLE-AQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG----- 75 (117)
T ss_dssp ------CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT-----
T ss_pred CCCcH-HHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC-----
Confidence 35787 8999999999999 68889999999999999999999999999999999999 89999999999887
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchhHH
Q 020060 152 QAEIVEESIQHAKEAITLDVKDGNSWY 178 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~~~~~~~ 178 (331)
++++|+..+++++...|+++....
T Consensus 76 ---~~~~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 76 ---RYEQGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp ---CHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred ---CHHHHHHHHHHHHHhCCCcHHHHH
Confidence 499999999999999999876543
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.41 E-value=1e-12 Score=100.18 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=116.5
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
++...+.++..+|.++...|++ ++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNF-RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999998 99999999999986543 3588999999999999999999999999875432
Q ss_pred -------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC------CchhHHHHHHHHHhhhhhcCCCChhhH
Q 020060 133 -------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK------DGNSWYNLGNACLTSFFVTGSWDHSKL 199 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~~~~~~~~~~~~~ 199 (331)
.++..+|.++...| ++++|+.++++++...+. ...++..+|.++... |++
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~---------g~~ 145 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQ--------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL---------GNH 145 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCH
T ss_pred CCcHHHHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHc---------cCH
Confidence 56788999999887 499999999999976432 245788999999999 999
Q ss_pred HHHHHHHHHHHhc
Q 020060 200 LQSLKAYQNAEKD 212 (331)
Q Consensus 200 ~~A~~~~~~al~~ 212 (331)
++|+.+++++++.
T Consensus 146 ~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 146 DQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999974
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.6e-12 Score=116.07 Aligned_cols=200 Identities=11% Similarity=0.043 Sum_probs=152.5
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH-----------------HHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-----------------DAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
.....|..+...|+| ++|++.|.++++..|... .++..+|.+|...|++++|+.++.+++..
T Consensus 6 ~~l~~a~~l~~~~~y-~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQY-NEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp HHHHHHHHHHHHTCH-HHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCCCH-HHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 345677888889998 999999999999887642 46889999999999999999999999887
Q ss_pred CCCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCC------CCchhHHHHHHHHHhhhhhcCCCC
Q 020060 129 GPNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDV------KDGNSWYNLGNACLTSFFVTGSWD 195 (331)
Q Consensus 129 ~~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~~~~ 195 (331)
.+.. .+...++.++...| ++++|+.++++++...+ ....++..+|.++...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------- 148 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPD--------SLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK-------- 148 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCS--------CHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH--------
T ss_pred HHHccchHHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc--------
Confidence 6543 23344566655555 48899999998887533 2356788999999999
Q ss_pred hhhHHHHHHHHHHHHhchhc----CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH--------HHHHHHHH
Q 020060 196 HSKLLQSLKAYQNAEKDERM----KSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT--------EEVQMMVN 263 (331)
Q Consensus 196 ~~~~~~A~~~~~~al~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~l~~~~~ 263 (331)
|++++|+..+++++..... +....++..+|.+|..+|++++|..++++++.+.+..... ...+.++.
T Consensus 149 -g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 149 -KQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp -TCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred -cChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 9999999999999873211 2234679999999999999999999999999875443221 44455555
Q ss_pred HHHHHHHHHHhhhhhhhHHH
Q 020060 264 LLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 264 ~l~~~~~a~~~~~~a~~l~~ 283 (331)
..+++.+|.+.|.++.+...
T Consensus 228 ~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 228 EDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp SSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHhh
Confidence 55667777777766665433
No 184
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.38 E-value=5.8e-13 Score=116.79 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYN 179 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 179 (331)
.+|..+|..+...|+|++|..+|.++ ..|..++.++..+|+ +++|++.++++ +++.+|..
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~--------yq~AVea~~KA-----~~~~~Wk~ 182 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGE--------YQAAVDGARKA-----NSTRTWKE 182 (449)
T ss_dssp --------------CTTTHHHHHHHT-------TCHHHHHHHHHTTTC--------HHHHHHHHHHH-----TCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhcc--------HHHHHHHHHHc-----CCchhHHH
Confidence 36666666666666666666666655 345666777776653 77777777766 35667777
Q ss_pred HHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHH
Q 020060 180 LGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEV 258 (331)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l 258 (331)
.+.++... |+++.|..+.... -.+|+-...+..+|.+.|++++|+.++++++.+++.+... ..+
T Consensus 183 v~~aCv~~---------~ef~lA~~~~l~L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel 247 (449)
T 1b89_A 183 VCFACVDG---------KEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 247 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHTTTTT------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHH
T ss_pred HHHHHHHc---------CcHHHHHHHHHHH------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 77777766 7777775554432 2344445568889999999999999999999999998887 666
Q ss_pred HHHH--HHHHHHHHHHHhhhhhhhHHHHHhhccc
Q 020060 259 QMMV--NLLDKIENLLKGHAKTKRVASLASSLAV 290 (331)
Q Consensus 259 ~~~~--~~l~~~~~a~~~~~~a~~l~~~~~~~~~ 290 (331)
+.++ ...++..+.++.|.....+.++++.-..
T Consensus 248 ~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~ 281 (449)
T 1b89_A 248 AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 281 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 6554 5678999999999999998887665443
No 185
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.33 E-value=2.7e-13 Score=118.90 Aligned_cols=184 Identities=10% Similarity=-0.004 Sum_probs=52.5
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHH
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERS 144 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~ 144 (331)
.+|..+|.++...|++ ++|++.|.++ .++.++..++.++...|++++|+.+++.+.+..++......++.++.+
T Consensus 33 ~vWs~La~A~l~~g~~-~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~K 106 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMV-KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 106 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHH
Confidence 3677777777777776 7777777653 345567777777777777777777777776543332333344444444
Q ss_pred hccCchh--------------------HHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHH
Q 020060 145 MAQGSEN--------------------QAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLK 204 (331)
Q Consensus 145 ~g~~~~~--------------------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~ 204 (331)
+|..... ..|++++|..+|.++ ..|..+|.++..+ |++++|++
T Consensus 107 lg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~L---------g~yq~AVe 169 (449)
T 1b89_A 107 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL---------GEYQAAVD 169 (449)
T ss_dssp --CHHHHTTTTTCC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTT---------TCHHHHHH
T ss_pred hCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHh---------ccHHHHHH
Confidence 4320000 112355555555433 2445555555555 55555555
Q ss_pred HHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 205 AYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 205 ~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.++++ .++..|.....++...|+++.|..+... +..+|++ ...+...+...|+++++++.+.+++.+
T Consensus 170 a~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 170 GARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE--LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 55544 2344555555555555555555443332 1122221 134556677777777777777777654
No 186
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.32 E-value=1.2e-11 Score=89.16 Aligned_cols=99 Identities=10% Similarity=0.072 Sum_probs=86.2
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHH
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYER 237 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~ 237 (331)
+|+..|+++++.+|+++.+|+.+|.++... |++++|+..|++++... |.++.+++++|.++..+|++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEH---------EQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHH
Confidence 578899999999999999999999999999 99999999999999955 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHH---HHHHHHHHHHHH
Q 020060 238 ALSGFEASALKDPSLNAT---EEVQMMVNLLDK 267 (331)
Q Consensus 238 A~~~~~~al~~~~~~~~~---~~l~~~~~~l~~ 267 (331)
|..+|++++.+.|..... ..+...+..+++
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence 999999999998865432 444444444443
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.30 E-value=1.7e-11 Score=102.95 Aligned_cols=164 Identities=10% Similarity=-0.018 Sum_probs=127.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC--Ch-HHHhhHHHHHHHhccCchhHHHHHHHHH
Q 020060 84 AEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP--NK-KILCQLSMLERSMAQGSENQAEIVEESI 160 (331)
Q Consensus 84 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~ 160 (331)
|+..+++.+...+....++..+|.++...|++++|+.++.+++..+| .+ .++..++.++..+| +.+.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~--------r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN--------NVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT--------CHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC--------CHHHHH
Confidence 56677777766656677788999999999999999999999999987 55 88888999999887 599999
Q ss_pred HHHHHHhcCCCC----CchhHHHHHHH--HHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC--ChhHHhhHHHHHHHh
Q 020060 161 QHAKEAITLDVK----DGNSWYNLGNA--CLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS--NPDLYFNCATVNKYL 232 (331)
Q Consensus 161 ~~~~~al~~~p~----~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~la~~~~~~ 232 (331)
+.+++..+.+|+ +..+...++.. .+.. | .+++.+|...|+++.... |+ .+..+++ ++..+
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~----g---~~~~q~A~~~f~El~~~~--p~~~~~~lLln---~~~~~ 224 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFAT----N---KETATSNFYYYEELSQTF--PTWKTQLGLLN---LHLQQ 224 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH----T---CSTTTHHHHHHHHHHTTS--CSHHHHHHHHH---HHHHH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHh----C---CccHHHHHHHHHHHHHhC--CCcccHHHHHH---HHHHc
Confidence 999999888883 23344555544 5444 0 038999999999987632 54 2344455 89999
Q ss_pred hcHHHHHHHHHHHHhc----------CCCCcHH-HHHHHHHHHHHH
Q 020060 233 ENYERALSGFEASALK----------DPSLNAT-EEVQMMVNLLDK 267 (331)
Q Consensus 233 g~~~~A~~~~~~al~~----------~~~~~~~-~~l~~~~~~l~~ 267 (331)
|++++|...++..++. +|+++.. .++..+...+|+
T Consensus 225 g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 225 RNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp TCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 9999999999988877 4777776 577767777775
No 188
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.29 E-value=1.6e-10 Score=113.00 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=115.6
Q ss_pred CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchh
Q 020060 97 SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNS 176 (331)
Q Consensus 97 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 176 (331)
+.+.+|+.+|.++...|++++|+.+|.++ .+...+..++.++..+| ++++|++++..+.+..++ +.+
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lG--------kyEEAIeyL~mArk~~~e-~~I 1169 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSG--------NWEELVKYLQMARKKARE-SYV 1169 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhhccc-ccc
Confidence 56888999999999999999999999876 22277888899888776 499999999988887743 333
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATE 256 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 256 (331)
...+|.+|..+ +++++ ++.| +. ..+...+..+|..+...|+|++|..+|.++ ....
T Consensus 1170 dt~LafaYAKl---------~rlee-le~f---I~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~ 1225 (1630)
T 1xi4_A 1170 ETELIFALAKT---------NRLAE-LEEF---IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFG 1225 (1630)
T ss_pred cHHHHHHHHhh---------cCHHH-HHHH---Hh----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHH
Confidence 44588888877 77763 4444 22 334456778999999999999999999986 1237
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 257 EVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.++.++..+|++++|++.+.+|.....
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~n~~a 1252 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKANSTRT 1252 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence 888899999999999998888877655
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.28 E-value=3.5e-11 Score=82.47 Aligned_cols=87 Identities=28% Similarity=0.427 Sum_probs=79.2
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhh
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQ 137 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 137 (331)
+++..+..++.+|.++...|++ ++|+.+|++++..+|.++.++..+|.++...|++++|+.+|+++++++|++ .++..
T Consensus 4 ~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 82 (91)
T 1na3_A 4 DPGNSAEAWYNLGNAYYKQGDY-DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 82 (91)
T ss_dssp --CHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccccHHHHHHHHHHHHHccCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3456778899999999999998 999999999999999999999999999999999999999999999999998 88888
Q ss_pred HHHHHHHhc
Q 020060 138 LSMLERSMA 146 (331)
Q Consensus 138 l~~~~~~~g 146 (331)
+|.++..+|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 998887543
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.23 E-value=1.5e-10 Score=83.41 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHH
Q 020060 83 DAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQ 161 (331)
Q Consensus 83 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~ 161 (331)
.|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++ .+++.+|.++..+| ++++|+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG--------DRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC--------CHHHHHH
Confidence 58899999999999999999999999999999999999999999999998 88999999999887 4999999
Q ss_pred HHHHHhcCCCCCc
Q 020060 162 HAKEAITLDVKDG 174 (331)
Q Consensus 162 ~~~~al~~~p~~~ 174 (331)
.|++++++.|...
T Consensus 75 ~~~~al~~~~~~~ 87 (115)
T 2kat_A 75 AWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHhccccc
Confidence 9999999887543
No 191
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.20 E-value=1.1e-09 Score=102.50 Aligned_cols=200 Identities=9% Similarity=-0.004 Sum_probs=155.7
Q ss_pred hhhHHHHHhhhhhhcccccHHHHH-HHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-----------
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAE-DHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG----------- 129 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------- 129 (331)
....+|+..+..+...|+. ++|. ..|.+++...|.....|...+......|+++.|...|++++...
T Consensus 341 ~~~~lW~~ya~~~~~~~~~-~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTD-STVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCC-TTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 3467899999998888986 8897 99999999999999999999999999999999999999999752
Q ss_pred CC-----------h-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-CCCCchhHHHHHHHHHhhhhhcCCCCh
Q 020060 130 PN-----------K-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-DVKDGNSWYNLGNACLTSFFVTGSWDH 196 (331)
Q Consensus 130 ~~-----------~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (331)
|. . .+|...+....+.| ..+.|..+|.+|++. .+....+|...+.+-... +
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~--------~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~----~---- 483 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQ--------GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI----S---- 483 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHH--------CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT----T----
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh----C----
Confidence 43 2 45777777766554 489999999999987 444566777666655544 1
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH---H-HHHHHHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA---T-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~-~~l~~~~~~l~~~~~a~ 272 (331)
++++.|...|+++++.. |.++..|...+......|+.+.|...|++++...|+... . ..........|..+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 45899999999999955 999999999999999999999999999999999885222 2 33334444445444444
Q ss_pred Hhhhhhhh
Q 020060 273 KGHAKTKR 280 (331)
Q Consensus 273 ~~~~~a~~ 280 (331)
+...++.+
T Consensus 562 ~v~~R~~~ 569 (679)
T 4e6h_A 562 TLEKRFFE 569 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.3e-11 Score=87.99 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=45.4
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+..++.+|.++...|+| ++|+.+|++++.++|+++.++.++|.++...|++++|+.+|+++++++|++
T Consensus 4 ~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLY-REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 44566666666666665 666666666666666666666666666666666666666666666666665
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.19 E-value=2.6e-11 Score=86.45 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=75.4
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++..|..+|.++... |++++|+..|++++... |.++.+++++|.++..+|++++|+.+|++++.++|++
T Consensus 3 ~~~~~~~~g~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQ---------GLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 456889999999988 99999999999999955 9999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhh
Q 020060 253 NATEEVQMMVNLLDKIENLLKGH 275 (331)
Q Consensus 253 ~~~~~l~~~~~~l~~~~~a~~~~ 275 (331)
........++..++.....++.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhH
Confidence 44333444444555544444433
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.18 E-value=2e-10 Score=102.44 Aligned_cols=168 Identities=10% Similarity=0.015 Sum_probs=136.8
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh----
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA------DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---- 132 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---- 132 (331)
...++..+|.+|...|++ ++|++++.+++...+... .+...+|.++...|++++|+.++++++...+..
T Consensus 54 ~~~al~~l~~~y~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 132 (434)
T 4b4t_Q 54 QETSILELGQLYVTMGAK-DKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF 132 (434)
T ss_dssp HHHHHHHHHHHHHHHTCH-HHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence 345688999999999998 999999999998765532 356678889889999999999999998764322
Q ss_pred ---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC------CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 ---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL------DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 ---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
..+..+|.++...| ++.+|..++++++.. .+....++..+|.+|... |++++|.
T Consensus 133 ~~~~~~~~la~~~~~~g--------~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~A~ 195 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKK--------QYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL---------RNLAKSK 195 (434)
T ss_dssp SHHHHHHHHHHHHHHHT--------CHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHcc--------ChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh---------CcHHHHH
Confidence 57788999999887 499999999998764 233456889999999999 9999999
Q ss_pred HHHHHHHhchh-cCCC----hhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 204 KAYQNAEKDER-MKSN----PDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 204 ~~~~~al~~~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
..+++++.... .+.. ...+..+|.++...|++.+|..+|.+++..
T Consensus 196 ~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 196 ASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999997431 1222 244788899999999999999999999874
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.17 E-value=7.5e-11 Score=82.80 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=67.6
Q ss_pred CCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 169 LDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 169 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.+|+++.+|+.+|.++... |++++|+..|+++++.. |.++.+|+++|.++..+|++++|+..|++++.+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKH---------DNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4789999999999999999 99999999999999955 999999999999999999999999999999999
Q ss_pred CCCCcH
Q 020060 249 DPSLNA 254 (331)
Q Consensus 249 ~~~~~~ 254 (331)
.|....
T Consensus 71 ~~~~~~ 76 (100)
T 3ma5_A 71 AREEGT 76 (100)
T ss_dssp HHHHSC
T ss_pred hhcCCc
Confidence 776544
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.13 E-value=1.6e-10 Score=81.08 Aligned_cols=83 Identities=12% Similarity=0.091 Sum_probs=71.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhh
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQ 137 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~ 137 (331)
+..+.+++.+|.++...|+| ++|+.+|+++++++|+++.+|+.+|.+|...|++++|+..|++++++.|.. .....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNA-SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 45678899999999999998 999999999999999999999999999999999999999999999987765 33344
Q ss_pred HHHHHHH
Q 020060 138 LSMLERS 144 (331)
Q Consensus 138 l~~~~~~ 144 (331)
+...+..
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.13 E-value=2.7e-10 Score=77.90 Aligned_cols=83 Identities=19% Similarity=0.368 Sum_probs=75.6
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
.++.+++.+|.++... |++++|+.+|++++... |.++.+++++|.++...|++++|+.+|++++.++|+
T Consensus 7 ~~~~~~~~la~~~~~~---------~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQ---------GDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4567899999999998 99999999999999955 999999999999999999999999999999999999
Q ss_pred CcHH-HHHHHHHHHH
Q 020060 252 LNAT-EEVQMMVNLL 265 (331)
Q Consensus 252 ~~~~-~~l~~~~~~l 265 (331)
+... ..++.++..+
T Consensus 76 ~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 9887 8888777654
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.09 E-value=1.8e-10 Score=80.45 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=79.5
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHh
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSLAD-AWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSM 145 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~ 145 (331)
+.+|..+...|++ ++|+..|+++++.+|+++. +++.+|.+|...|++++|+.+|+++++++|++ .++..
T Consensus 4 ~~~a~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDI-ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCH-HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 5678899999998 9999999999999999999 99999999999999999999999999999998 55432
Q ss_pred ccCchhHHHHHHHHHHHHHHHhcCCCCCc
Q 020060 146 AQGSENQAEIVEESIQHAKEAITLDVKDG 174 (331)
Q Consensus 146 g~~~~~~~~~~~~A~~~~~~al~~~p~~~ 174 (331)
+.+.+++..|++++..+|+++
T Consensus 75 --------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 --------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp --------HHHHHHHHHHCCTTHHHHCCS
T ss_pred --------HHHHHHHHHHHHHhccCcccc
Confidence 137888999988888777654
No 199
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.09 E-value=4.4e-09 Score=98.55 Aligned_cols=181 Identities=11% Similarity=0.015 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHH-HHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAK-NCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEES 159 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A 159 (331)
+.....|++++...|..+..|+..+..+...|+.++|. ..|.+++...|.+ ..|..++......| +++.|
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~--------~~e~a 397 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT--------KIPEI 397 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence 34668899999999999999999999999999999997 9999999999988 66778888888776 48899
Q ss_pred HHHHHHHhcCC-----------CC-----------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC
Q 020060 160 IQHAKEAITLD-----------VK-----------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS 217 (331)
Q Consensus 160 ~~~~~~al~~~-----------p~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 217 (331)
..+|++++... |. .+.+|...+.+.... |..+.|...|.+|++.. .+.
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~---------~~l~~AR~vf~~A~~~~-~~~ 467 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI---------QGLAASRKIFGKCRRLK-KLV 467 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH---------HCHHHHHHHHHHHHHTG-GGS
T ss_pred HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhc-CCC
Confidence 99999988742 42 345788888888877 89999999999999841 245
Q ss_pred ChhHHhhHHHHHHHhhc-HHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 218 NPDLYFNCATVNKYLEN-YERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 218 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
...+|...|.+....++ ++.|...|+++++..|+++.. ...+......|+.+.|...|.+|..
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 67778888887777654 999999999999999998887 6778888888888888877777664
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.07 E-value=2.2e-09 Score=79.99 Aligned_cols=129 Identities=15% Similarity=0.011 Sum_probs=99.5
Q ss_pred cccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHH
Q 020060 78 PEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVE 157 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~ 157 (331)
+++ ++|+.+|+++.+.....+ . +|.+|...+..++|+.+|+++.+.. +..+++++|.++..-. . ..++++
T Consensus 9 ~d~-~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g-~~~a~~~Lg~~y~~G~-g---~~~d~~ 78 (138)
T 1klx_A 9 KDL-KKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACELN-SGNGCRFLGDFYENGK-Y---VKKDLR 78 (138)
T ss_dssp HHH-HHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCS-S---SCCCHH
T ss_pred cCH-HHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHcCC-C---CCccHH
Confidence 565 899999999998874444 4 9999999999999999999998872 2388999999988610 0 013599
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHH
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCAT 227 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~ 227 (331)
+|+.+|+++.+. .++.++++||.+|..- ..-.+++++|+.+|+++.+ ..++.+..+++.
T Consensus 79 ~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G-----~g~~~d~~~A~~~~~~Aa~----~g~~~A~~~l~~ 137 (138)
T 1klx_A 79 KAAQYYSKACGL--NDQDGCLILGYKQYAG-----KGVVKNEKQAVKTFEKACR----LGSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHT-----SSSCCCHHHHHHHHHHHHH----TTCHHHHHHC--
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHHHHHCC-----CCCCcCHHHHHHHHHHHHH----CCCHHHHHHHhh
Confidence 999999999886 6789999999999871 0011899999999999987 456666666553
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=2.1e-09 Score=80.13 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=95.2
Q ss_pred CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcC
Q 020060 113 GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTG 192 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 192 (331)
+++++|+.+|+++.+..... +. +|.++...+ .+++|+.+|+++.+. .++.++++||.+|..-
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-a~--lg~~y~~g~--------~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G----- 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-GC--LSLVSNSQI--------NKQKLFQYLSKACEL--NSGNGCRFLGDFYENG----- 70 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-HH--HHHHTCTTS--------CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHcCCCHh-hh--HHHHHHcCC--------CHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC-----
Confidence 46899999999999887443 33 888877554 377799999999886 6789999999999871
Q ss_pred CCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHH----hhcHHHHHHHHHHHHhcCC
Q 020060 193 SWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKY----LENYERALSGFEASALKDP 250 (331)
Q Consensus 193 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~ 250 (331)
....+++++|+.+|+++.+ ..++.+++++|.+|.. .+++++|+.+|+++.+...
T Consensus 71 ~g~~~d~~~A~~~~~~Aa~----~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 71 KYVKKDLRKAAQYYSKACG----LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCCccHHHHHHHHHHHHc----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 0012899999999999987 5789999999999999 8999999999999988743
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.02 E-value=1.4e-08 Score=86.89 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc---CchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhc
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ---GSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVT 191 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~---~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 191 (331)
.+|+.+|+++++++|+. .++..++.++..... ...........+... ..++..+|.++.++..++..+...
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~---- 290 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNNLSIIYQIKAVSALVK---- 290 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCcCHHHHHHHHHHHHhC----
Confidence 45555566666666555 444444444432110 000011112333331 134567799999999999988888
Q ss_pred CCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 192 GSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 192 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|++++|+..+++++.++ | +...|..+|.++...|++++|...|.+|+.++|..+.
T Consensus 291 -----gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 291 -----GKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp -----TCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred -----CCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999965 5 4677889999999999999999999999999998764
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.00 E-value=4.3e-09 Score=73.27 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh-HHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD-LYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+..|.++... |++++|+..|+++++.. |.++. +++++|.++..+|++++|+.+|++++.++|++...
T Consensus 3 ~~~~a~~~~~~---------~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQ---------GDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHH---------TCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 35678888888 99999999999999955 99999 99999999999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 020060 256 EEVQMMVNLLDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 256 ~~l~~~~~~l~~~~~a~~~~~~a~~l~~ 283 (331)
.. .+.+.+++..|.++..+.+
T Consensus 72 ~~-------~~~~~~a~~~~~~~~~~~p 92 (99)
T 2kc7_A 72 QA-------RKMVMDILNFYNKDMYNQL 92 (99)
T ss_dssp HH-------HHHHHHHHHHHCCTTHHHH
T ss_pred HH-------HHHHHHHHHHHHHHhccCc
Confidence 21 1677778888888776655
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.99 E-value=1.3e-08 Score=87.19 Aligned_cols=157 Identities=6% Similarity=-0.100 Sum_probs=113.7
Q ss_pred HHhcCCCh-H--HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHH
Q 020060 125 ALSKGPNK-K--ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQ 201 (331)
Q Consensus 125 al~~~~~~-~--~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 201 (331)
+....|.+ . -++..|..+...+ ....+.+|+.+|+++++++|+++.+|-.++.+|... ...+.+.......
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~-----~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-~~~~~~~~~~~~~ 259 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHG-----DDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-HSQHPLDEKQLAA 259 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHC-----SHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-HHHSCCCHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-hccCCCchhhHHH
Confidence 33445555 2 2334455554443 224589999999999999999999999999998844 2222222223322
Q ss_pred HHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 020060 202 SLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNATEEVQMMVNLLDKIENLLKGHAKTKRV 281 (331)
Q Consensus 202 A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~l~~~~~a~~~~~~a~~l 281 (331)
.-..+..+......|.++.++..+|..+...|++++|+.++++++.++|+......+|.++...|++++|+..|.+|.++
T Consensus 260 l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 260 LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 22333333333345889999999999999999999999999999999986332388899999999999999999999999
Q ss_pred HHHHhh
Q 020060 282 ASLASS 287 (331)
Q Consensus 282 ~~~~~~ 287 (331)
.|....
T Consensus 340 ~P~~~t 345 (372)
T 3ly7_A 340 RPGANT 345 (372)
T ss_dssp SCSHHH
T ss_pred CCCcCh
Confidence 876543
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.95 E-value=6.9e-09 Score=93.68 Aligned_cols=125 Identities=6% Similarity=-0.089 Sum_probs=103.8
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhc-----CCC---cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-----CCh---
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKL-----NPS---LADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-----PNK--- 132 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~-----~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~--- 132 (331)
..+..+...|+| ++|+..+++++++ .|+ ...++.++|.+|..+|+|++|+.++++++++. |++
T Consensus 314 e~a~~~~~qg~~-~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLY-HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHTTTCH-HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhCCCH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 344557789998 9999999999985 344 46788999999999999999999999999763 444
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----CCCCch---hHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL-----DVKDGN---SWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
..+.++|.++..+| ++++|+..+++|+++ .|++|. ....++.++..+ +.+++|.
T Consensus 393 a~~l~nLa~~~~~~G--------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~---------~~~~~ae 455 (490)
T 3n71_A 393 GMAVMRAGLTNWHAG--------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMEL---------RMFRQNE 455 (490)
T ss_dssp HHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH---------HHHHHHH
Confidence 67889999999887 499999999999873 566654 557888899888 9999999
Q ss_pred HHHHHHHh
Q 020060 204 KAYQNAEK 211 (331)
Q Consensus 204 ~~~~~al~ 211 (331)
..|.++.+
T Consensus 456 ~~~~~~~~ 463 (490)
T 3n71_A 456 FMYHKMRE 463 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998865
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.94 E-value=1.7e-08 Score=91.06 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=104.5
Q ss_pred HHHHHHHHhCChhHHHHHHHHHHhcC-----CCh----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC-----
Q 020060 104 CLGSCIWKKGDLPAAKNCFNLALSKG-----PNK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----- 169 (331)
Q Consensus 104 ~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----- 169 (331)
..+..+..+|+|++|+..+++++++. |++ ..+.++|.+|..+| +|++|+.++++++++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g--------~~~eA~~~~~~aL~i~~~~l 385 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ--------AYEEASHYARRMVDGYMKLY 385 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHHHHc
Confidence 34455778999999999999999763 444 67888999999887 499999999999874
Q ss_pred CCCC---chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc---hhcCCChhH---HhhHHHHHHHhhcHHHHHH
Q 020060 170 DVKD---GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD---ERMKSNPDL---YFNCATVNKYLENYERALS 240 (331)
Q Consensus 170 ~p~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~---~~~la~~~~~~g~~~~A~~ 240 (331)
.|++ ...+++||.+|... |++++|+..|++++.. ...|++|.+ ..+++.++..++.+.+|..
T Consensus 386 G~~Hp~~a~~l~nLa~~~~~~---------G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 386 HHNNAQLGMAVMRAGLTNWHA---------GHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp CTTCHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 45789999999999 9999999999999962 123666644 7889999999999999999
Q ss_pred HHHHHHhc
Q 020060 241 GFEASALK 248 (331)
Q Consensus 241 ~~~~al~~ 248 (331)
.|.++.+-
T Consensus 457 ~~~~~~~~ 464 (490)
T 3n71_A 457 MYHKMREA 464 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.91 E-value=2.5e-08 Score=74.16 Aligned_cols=96 Identities=15% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHh
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYL 232 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~ 232 (331)
.....+.+.|.+.+..+|.+.++.+++|+++... ...++.++++..++.+++.. .| .+.+++|++|..++++
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S------~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRS------KYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC------SSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHc
Confidence 3477788888888888899999999999999986 12248899999999999832 14 5688999999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCcHHH
Q 020060 233 ENYERALSGFEASALKDPSLNATE 256 (331)
Q Consensus 233 g~~~~A~~~~~~al~~~~~~~~~~ 256 (331)
|+|++|..+++++++++|++..+.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999998663
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=4.4e-08 Score=67.30 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=63.8
Q ss_pred chhhHHHHHhhhhhhcccc---cHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 61 TQRATYEYLKGKILDVVPE---YRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
+..+.++..+|.+++..++ . ++|..+++++++++|+++.++..+|..++..|+|++|+.+|+++++.+|..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~-~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMT-DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCC-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4557788888988875544 5 899999999999999999999999999999999999999999999999984
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.76 E-value=9.2e-08 Score=65.66 Aligned_cols=78 Identities=6% Similarity=-0.125 Sum_probs=67.7
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
+|+++..+..+|.++... + +....++|...++++++.+ |+++.+++.+|..++..|+|++|+.+|++++..+
T Consensus 2 ~p~~~~~~~~~a~al~~~----~--~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYL----H--KQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHT----T--TTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHh----c--CCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 688999999999999755 0 0123699999999999955 9999999999999999999999999999999999
Q ss_pred CCCcHH
Q 020060 250 PSLNAT 255 (331)
Q Consensus 250 ~~~~~~ 255 (331)
|..+..
T Consensus 74 p~~~~~ 79 (93)
T 3bee_A 74 DPNLDR 79 (93)
T ss_dssp CTTCCH
T ss_pred CCCccH
Confidence 995543
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.76 E-value=5.4e-07 Score=74.11 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCC--CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC-hhHHhhHHHH
Q 020060 152 QAEIVEESIQHAKEAITLDVK--DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN-PDLYFNCATV 228 (331)
Q Consensus 152 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~la~~ 228 (331)
......+|...++++++++|+ ++.+|..+|.+|...+-..+ |+.++|..+|++++.++ |+. ...++.+|..
T Consensus 175 Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~g----Gd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~ 248 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFG----GGMEKAHTAFEHLTRYC--SAHDPDHHITYADA 248 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTT----CCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccC----CCHHHHHHHHHHHHHhC--CCCCchHHHHHHHH
Confidence 335688999999999999999 67899999999998643334 99999999999999966 975 9999999999
Q ss_pred HHH-hhcHHHHHHHHHHHHhcCCCC
Q 020060 229 NKY-LENYERALSGFEASALKDPSL 252 (331)
Q Consensus 229 ~~~-~g~~~~A~~~~~~al~~~~~~ 252 (331)
+.. .|++++|..++++++..+|..
T Consensus 249 l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 988 599999999999999988874
No 211
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.62 E-value=3.3e-07 Score=64.41 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=66.9
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcC-------CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLN-------PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
+.-++.+|..++..++| ..|+..|++|++.. +..+.++..+|.++...|+++.|+.++++++++.|++ .++
T Consensus 5 a~dc~~lG~~~~~~~~y-~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADY-YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHccch-HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45678999999999999 99999999999863 3468899999999999999999999999999999999 666
Q ss_pred hhHH
Q 020060 136 CQLS 139 (331)
Q Consensus 136 ~~l~ 139 (331)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6666
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.60 E-value=2.7e-07 Score=64.87 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=66.2
Q ss_pred CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-----cCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHh
Q 020060 173 DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-----MKSNPDLYFNCATVNKYLENYERALSGFEASAL 247 (331)
Q Consensus 173 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 247 (331)
++.-.+.+|..++.. |+|..|+.+|+.+++... .+..+.++.++|.++..+|+++.|+.++++++.
T Consensus 4 sa~dc~~lG~~~~~~---------~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTE---------ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc---------cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345678999999999 999999999999998421 123467799999999999999999999999999
Q ss_pred cCCCCcHH-HHHH
Q 020060 248 KDPSLNAT-EEVQ 259 (331)
Q Consensus 248 ~~~~~~~~-~~l~ 259 (331)
++|++... .+++
T Consensus 75 l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 75 LDPEHQRANGNLK 87 (104)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCHHHHhhHH
Confidence 99999876 5554
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.57 E-value=5.6e-07 Score=66.86 Aligned_cols=92 Identities=9% Similarity=0.104 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC---ChhHHHHHHHHHHhcC-CCh--HHHhhHHHHHHHhccCchhHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG---DLPAAKNCFNLALSKG-PNK--KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~-~~~--~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..+...|.+.+..+|.+.++.+++|+++.+.+ +.++++..++.+++.+ |.. ++++++|..+.++|+
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~-------- 86 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------- 86 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC--------
Confidence 56677777777777888888888888888877 5668888888888887 633 788888888887764
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLG 181 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~ 181 (331)
|++|..+++++++.+|++..+.....
T Consensus 87 Y~~A~~y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 87 YEKALKYVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 88888888888888888876654443
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.49 E-value=2e-07 Score=82.81 Aligned_cols=92 Identities=12% Similarity=0.033 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhcC-----CCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc---hhcCCChhH--
Q 020060 155 IVEESIQHAKEAITL-----DVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD---ERMKSNPDL-- 221 (331)
Q Consensus 155 ~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~-- 221 (331)
++++|+..+++++++ .|+++ .++.+||.+|..+ |+|++|+.++++++.. ...|++|++
T Consensus 313 ~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~---------g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 383 (433)
T 3qww_A 313 SPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM---------QDWEGALKYGQKIIKPYSKHYPVYSLNVAS 383 (433)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 589999999999873 45554 5688999999998 9999999999999962 123666655
Q ss_pred -HhhHHHHHHHhhcHHHHHHHHHHHHhc-----CCCCcHH
Q 020060 222 -YFNCATVNKYLENYERALSGFEASALK-----DPSLNAT 255 (331)
Q Consensus 222 -~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 255 (331)
++++|.+|..+|++++|..+|++|+.+ .|+++..
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 899999999999999999999999985 6777754
No 215
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=2.3e-05 Score=71.06 Aligned_cols=151 Identities=6% Similarity=-0.090 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHH------HHh------cc-
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLE------RSM------AQ- 147 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~------~~~------g~- 147 (331)
+.....|++++...|..+..|...+..+...|+.+.|...|++++.. |.+ ..+...+... ..+ +.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhcc
Confidence 44678999999999999999999999999999999999999999999 987 4444333220 000 00
Q ss_pred ------C-------------chhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChh-hHHHHHHHHH
Q 020060 148 ------G-------------SENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHS-KLLQSLKAYQ 207 (331)
Q Consensus 148 ------~-------------~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~A~~~~~ 207 (331)
. .....+..+.|...|.++ ...+.....|...+.+-... + +.+.|...|+
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~---------~~d~~~ar~ife 344 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA---------TGSRATPYNIFS 344 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH---------HCCSHHHHHHHH
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH---------CCChHHHHHHHH
Confidence 0 000123456677777777 32222333444444444333 3 4677777777
Q ss_pred HHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 208 NAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 208 ~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
.+++. .|+++..+...+......|+.+.|...|+++
T Consensus 345 ~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 345 SGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77763 3666766666666667777777777777776
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.47 E-value=7.9e-07 Score=79.02 Aligned_cols=93 Identities=10% Similarity=-0.035 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhcC-----CCCCc---hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhc---hhcCCChhH-
Q 020060 154 EIVEESIQHAKEAITL-----DVKDG---NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKD---ERMKSNPDL- 221 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~- 221 (331)
+++++|+..+++++++ .|+++ .++.++|.+|..+ |+|++|+.++++++.. ...|.+|..
T Consensus 301 g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~---------g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 301 WKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL---------GLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp TCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred ccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 3599999999999975 34554 5788999999988 9999999999999962 123666655
Q ss_pred --HhhHHHHHHHhhcHHHHHHHHHHHHhc-----CCCCcHH
Q 020060 222 --YFNCATVNKYLENYERALSGFEASALK-----DPSLNAT 255 (331)
Q Consensus 222 --~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~ 255 (331)
++++|.+|..+|++++|..+|++|+.+ .|+++..
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 899999999999999999999999985 6787764
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.45 E-value=5.1e-06 Score=68.40 Aligned_cols=191 Identities=9% Similarity=-0.005 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh--------------CChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhcc
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKK--------------GDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQ 147 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~ 147 (331)
.-.+..++-.+..+|++.......|..|..= ..++....-+.++.++.....-|...+.+...-|
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~~raL~~~~~~- 127 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYALSSLETAYPG- 127 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 4466777788889999987777766665432 1233333445555443322211111121111111
Q ss_pred CchhHHHHHHHHHH-----HHHH-HhcCCCCCchhHHHHHHHHHhhhhh-cCC-CChhhHHHHHHHHHHHHhchhcCC--
Q 020060 148 GSENQAEIVEESIQ-----HAKE-AITLDVKDGNSWYNLGNACLTSFFV-TGS-WDHSKLLQSLKAYQNAEKDERMKS-- 217 (331)
Q Consensus 148 ~~~~~~~~~~~A~~-----~~~~-al~~~p~~~~~~~~l~~~~~~~~~~-~~~-~~~~~~~~A~~~~~~al~~~~~~~-- 217 (331)
+.+++. -+.. .-+.+|++++.++-.|.+.....-. .+. ...+....|...++++++++ |.
T Consensus 128 --------~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLD--P~~~ 197 (301)
T 3u64_A 128 --------FTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLW--PSYQ 197 (301)
T ss_dssp --------HHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHC--TTHH
T ss_pred --------HHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhC--CCcc
Confidence 222221 1222 3346788888888888877654332 122 24478899999999999966 88
Q ss_pred ChhHHhhHHHHHHHh-----hcHHHHHHHHHHHHhcCCCC-cHH-HHHHHHHHH-HHHHHHHHHhhhhhhhHHH
Q 020060 218 NPDLYFNCATVNKYL-----ENYERALSGFEASALKDPSL-NAT-EEVQMMVNL-LDKIENLLKGHAKTKRVAS 283 (331)
Q Consensus 218 ~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~-~~l~~~~~~-l~~~~~a~~~~~~a~~l~~ 283 (331)
+..+|..+|.+|... |+.++|..+|+++++++|+. ... ..++..+.. .++.+++...+.+++...+
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 777999999999995 99999999999999999975 777 888988877 4889999988888876443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.38 E-value=2e-06 Score=76.41 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHH
Q 020060 36 SKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGS 107 (331)
Q Consensus 36 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~ 107 (331)
.+....+++++.+...+... ..+..+.++.++|.+|..+|+| ++|+.++++++.+ +|+.+..+.++|.
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~---~Hp~~a~~~~nLa~~y~~~g~~-~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFED---SNVYMLHMMYQAMGVCLYMQDW-EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCT---TSHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccCh---hchHHHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 34556677788887777644 7788899999999999999998 9999999999975 3445678999999
Q ss_pred HHHHhCChhHHHHHHHHHHhcC
Q 020060 108 CIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 108 ~~~~~g~~~~A~~~~~~al~~~ 129 (331)
+|..+|++++|+.+|++|+++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHH
Confidence 9999999999999999998763
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.35 E-value=5.9e-06 Score=73.40 Aligned_cols=102 Identities=11% Similarity=0.044 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL--------NPSLADAWLCLGSCIW 110 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~ 110 (331)
...+++++.+...+... ..+..+.++.++|.+|..+|+| ++|+.++++++.+ +|..+..++++|.+|.
T Consensus 307 ~~~~~~~L~~~~~~lg~---~h~~~~~~~~~L~~~y~~~g~~-~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~ 382 (429)
T 3qwp_A 307 LAMCQAIISSNSERLPD---INIYQLKVLDCAMDACINLGLL-EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQL 382 (429)
T ss_dssp HHHHHHHHTCSSCCCCT---TSHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcCCc---cchHHHHHHHHHHHHHHhhccH-HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHH
Confidence 34445555555555433 6778899999999999999998 9999999999975 3444668899999999
Q ss_pred HhCChhHHHHHHHHHHhc-----CCCh----HHHhhHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLALSK-----GPNK----KILCQLSMLERS 144 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al~~-----~~~~----~~~~~l~~~~~~ 144 (331)
.+|++++|+.+|++++++ .|++ ..+.+++.+...
T Consensus 383 ~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 383 HQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 999999999999999876 3554 344445555543
No 220
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.29 E-value=0.00034 Score=63.36 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=101.0
Q ss_pred hHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH------hh-
Q 020060 116 PAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACL------TS- 187 (331)
Q Consensus 116 ~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~------~~- 187 (331)
+.....|++++...|.. ..|...+..+...| +.+.|..++++|+.. |.+...|...+.... ..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~--------~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG--------QKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHH
Confidence 34567999999999988 88999988888766 489999999999999 998777765544310 00
Q ss_pred ----------------------hhhcCC--CChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhh-cHHHHHHHH
Q 020060 188 ----------------------FFVTGS--WDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLE-NYERALSGF 242 (331)
Q Consensus 188 ----------------------~~~~~~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~ 242 (331)
+..... ...+..+.|...|.++ +. .+....+|...|.+....+ +++.|...|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~--~~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN--EGVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT--SCCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 000000 0025678888999999 42 2345667777777777777 599999999
Q ss_pred HHHHhcCCCCcHH-HHHHHHHHHHHHHHHHH
Q 020060 243 EASALKDPSLNAT-EEVQMMVNLLDKIENLL 272 (331)
Q Consensus 243 ~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~ 272 (331)
+.+++..|+.+.. .........+|+.+.+.
T Consensus 344 e~al~~~~~~~~~~~~yid~e~~~~~~~~aR 374 (493)
T 2uy1_A 344 SSGLLKHPDSTLLKEEFFLFLLRIGDEENAR 374 (493)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999987754 44455555555544443
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.28 E-value=8.4e-06 Score=58.30 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHhh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYLE 233 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g 233 (331)
....+...|.+....++....+.+++|+++... ....+..+++..++..++.. .| ...+.++.+|..++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S------~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRT------RYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTS------SSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 466777777777777778889999999999876 13356667999999988732 13 45677999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCCcHHHHHH
Q 020060 234 NYERALSGFEASALKDPSLNATEEVQ 259 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~~~~~~~~~l~ 259 (331)
+|.+|..+++..+++.|++..+..+-
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999874443
No 222
>2xvs_A Tetratricopeptide repeat protein 5; antitumor protein, P53 cofactor, stress-response; 1.80A {Homo sapiens}
Probab=98.18 E-value=4.8e-06 Score=61.86 Aligned_cols=75 Identities=31% Similarity=0.535 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHH--HhhhhhhhHHHHHhhcccccc--------------CCCccccccchhhccCCcCceEEeEEe
Q 020060 257 EVQMMVNLLDKIENLL--KGHAKTKRVASLASSLAVVKL--------------SSSHKRATVDLLSEGLNKAVAVVGKVL 320 (331)
Q Consensus 257 ~l~~~~~~l~~~~~a~--~~~~~a~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (331)
....++..+.+..+++ +...+++|+.++++++....+ ...++..++..|++|+|++..++++++
T Consensus 5 ~~~~ll~~L~kl~~lv~~KGklK~KRL~~~~ssL~~~~lgp~~~g~~~~~~g~~~~l~~~~l~~L~~G~N~g~vv~gKVv 84 (166)
T 2xvs_A 5 REQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVILGKVV 84 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTCCGGGGGGGTTSCEECTTSCEECCEECCGGGCCSEECTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhcchhhcCcccCcccccccCCcceeeeeeHHHcccccCCCcEEEEEEE
Confidence 3556778888999998 899999999999999999886 335678899999999999999999999
Q ss_pred EeeecCCCCCC
Q 020060 321 FFVKHENVTPL 331 (331)
Q Consensus 321 ~~~~~~~~~~~ 331 (331)
++++++..+|+
T Consensus 85 ~~i~~e~~vP~ 95 (166)
T 2xvs_A 85 FSLTTEEKVPF 95 (166)
T ss_dssp EEECCTTCCSE
T ss_pred EEecCCCCCce
Confidence 99999999995
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.93 E-value=0.00011 Score=52.54 Aligned_cols=92 Identities=8% Similarity=0.057 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhH---HHHHHHHHHhcC-CCh--HHHhhHHHHHHHhccCchhHHHH
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPA---AKNCFNLALSKG-PNK--KILCQLSMLERSMAQGSENQAEI 155 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~-~~~--~~~~~l~~~~~~~g~~~~~~~~~ 155 (331)
..+...|.+.+..++...++.+++|+++....+... ++..++..+... |.. ..++.+|..++++|+
T Consensus 18 ~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~-------- 89 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE-------- 89 (126)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh--------
Confidence 445566666666666667777777777777666555 777777777665 423 677777777777763
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHH
Q 020060 156 VEESIQHAKEAITLDVKDGNSWYNLG 181 (331)
Q Consensus 156 ~~~A~~~~~~al~~~p~~~~~~~~l~ 181 (331)
|.+|..+++..++..|++..+.....
T Consensus 90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77777777777777777766654433
No 224
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.92 E-value=0.0019 Score=58.57 Aligned_cols=161 Identities=9% Similarity=-0.052 Sum_probs=124.5
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHhC---------ChhHHHHHHHHHHhc--CCChHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKL--NPSLADAWLCLGSCIWKKG---------DLPAAKNCFNLALSK--GPNKKI 134 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~--~~~~~~ 134 (331)
...=..+...|+. ++|+..|++.... .| +..+|..+-.++...+ ..+.|...|.+.... .|+...
T Consensus 30 ~~~id~c~k~G~~-~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 30 KQKLDMCSKKGDV-LEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHTTTSCCH-HHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3333567788996 9999999998775 34 4556666655655443 368899999987655 466677
Q ss_pred HhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC-CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhch
Q 020060 135 LCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD-VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 135 ~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 213 (331)
+..+-..+...| ++++|..++++..+.. +-+..+|..+-..|... |+.++|...|+...+..
T Consensus 108 yn~lI~~~~~~g--------~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~---------g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 108 FTNGARLAVAKD--------DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK---------GDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHHHHT--------CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC---------CCHHHHHHHHHHHHhcC
Confidence 778888888776 5999999999987753 23567888888888888 99999999999988753
Q ss_pred hcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 214 RMKSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 214 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
..-+...|..+-..+.+.|+.++|...|++....
T Consensus 171 -~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 171 -VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp -CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 2335567889999999999999999999998764
No 225
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.86 E-value=0.00062 Score=61.73 Aligned_cols=169 Identities=9% Similarity=-0.031 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC--CChHHHhhHHHHHHHhccCc-hhHHHHHHHHHHHHHHHhcCC-CCCchh
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKG--PNKKILCQLSMLERSMAQGS-ENQAEIVEESIQHAKEAITLD-VKDGNS 176 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l~~~~~~~g~~~-~~~~~~~~~A~~~~~~al~~~-p~~~~~ 176 (331)
.+..+-..+.+.|+.++|+..|++..+.. |+...+..+-.++...+... ....+.+++|.+.|.+..... +-+..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 35555677889999999999999988654 55555555544444332211 112346899999999887653 235678
Q ss_pred HHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc--CCCCcH
Q 020060 177 WYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALK--DPSLNA 254 (331)
Q Consensus 177 ~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~~ 254 (331)
|..+-..|... |++++|...|++..+... .-+...|..+-..|.+.|+.++|...|+..... .|+...
T Consensus 108 yn~lI~~~~~~---------g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 108 FTNGARLAVAK---------DDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp HHHHHHHHHHH---------TCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhc---------CCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 88899999988 999999999999887432 336677888999999999999999999998875 455444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhh
Q 020060 255 TEEVQMMVNLLDKIENLLKGHAKTK 279 (331)
Q Consensus 255 ~~~l~~~~~~l~~~~~a~~~~~~a~ 279 (331)
...+-..+...|+.++|.+.+.+-+
T Consensus 178 y~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 178 LAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4777788889999999987766543
No 226
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.82 E-value=0.00059 Score=48.92 Aligned_cols=80 Identities=11% Similarity=0.045 Sum_probs=66.8
Q ss_pred CCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 172 KDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
-.+.+.+++|+++... ....+..+++..++..++.. | ...+.++.+|..++++|+|.+|..+.+..+++.|
T Consensus 38 vs~qt~F~yAw~Lv~S------~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKS------TDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp SCHHHHHHHHHHHHHS------SCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCT
T ss_pred CChhhHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3567889999998876 13367789999999999843 6 4568899999999999999999999999999999
Q ss_pred CCcHHHHHH
Q 020060 251 SLNATEEVQ 259 (331)
Q Consensus 251 ~~~~~~~l~ 259 (331)
++..+..+-
T Consensus 110 ~N~QA~~Lk 118 (134)
T 3o48_A 110 NNKQVGALK 118 (134)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 999874443
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.74 E-value=0.00086 Score=48.71 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-CChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 171 VKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-SNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 171 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
.-.+.+.+++++++... ....+..+++..++..++.. | ...+.++.+|..++++|+|.+|..+.+..+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S------~~~~di~~GI~LLe~l~~~~--~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKS------TDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHS------SSHHHHHHHHHHHHHHHHHC--CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHHHhcC--ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45778899999999876 13467789999999999843 6 456789999999999999999999999999999
Q ss_pred CCCcHHHHHH
Q 020060 250 PSLNATEEVQ 259 (331)
Q Consensus 250 ~~~~~~~~l~ 259 (331)
|++.++..+-
T Consensus 108 P~n~QA~~Lk 117 (144)
T 1y8m_A 108 RNNKQVGALK 117 (144)
T ss_dssp CCCHHHHHHH
T ss_pred CCcHHHHHHH
Confidence 9998764443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.56 E-value=0.00074 Score=49.46 Aligned_cols=108 Identities=13% Similarity=0.062 Sum_probs=84.4
Q ss_pred hcCCCcHHHHHHHHHHHHHhCCh------hHHHHHHHHHHhcCCCh--H-------HHhhHHHHHHHhccCchhHHHHHH
Q 020060 93 KLNPSLADAWLCLGSCIWKKGDL------PAAKNCFNLALSKGPNK--K-------ILCQLSMLERSMAQGSENQAEIVE 157 (331)
Q Consensus 93 ~~~p~~~~~~~~lg~~~~~~g~~------~~A~~~~~~al~~~~~~--~-------~~~~l~~~~~~~g~~~~~~~~~~~ 157 (331)
-+.|++++.|..........|+. +.-++.|++|+..-|-. . .|...+.. . ..++.+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~--------ei~D~d 77 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-K--------AIQEPD 77 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-H--------HHHCGG
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-H--------HhcCHH
Confidence 45799999999999999999999 89999999999887654 2 23333322 2 225688
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChh
Q 020060 158 ESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPD 220 (331)
Q Consensus 158 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 220 (331)
+|...|+.++.+....+.+|...|..-.+. |+...|...+.+++... |....
T Consensus 78 ~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq---------gnl~kARkILg~AiG~~--~k~~~ 129 (161)
T 4h7y_A 78 DARDYFQMARANCKKFAFVHISFAQFELSQ---------GNVKKSKQLLQKAVERG--AVPLE 129 (161)
T ss_dssp GCHHHHHHHHHHCTTBHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTT--CBCHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHc---------ccHHHHHHHHHHHhccC--CCcHH
Confidence 999999999888777788888888888887 99999999999999855 65544
No 229
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.21 E-value=0.0065 Score=43.53 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=59.7
Q ss_pred HHHHHhhhhhhccccc--HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHH
Q 020060 65 TYEYLKGKILDVVPEY--RKDAEDHLSKAVKLNPS-LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSM 140 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~--~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~ 140 (331)
.+-+..|.++....+- ..+++..+...++.+|. .-+.++.+|..+++.|+|+.|..+.+.++++.|++ .+......
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 4455555555544321 26899999999998884 47899999999999999999999999999999999 55444433
Q ss_pred H
Q 020060 141 L 141 (331)
Q Consensus 141 ~ 141 (331)
+
T Consensus 121 I 121 (134)
T 3o48_A 121 V 121 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.20 E-value=0.0059 Score=44.73 Aligned_cols=113 Identities=10% Similarity=-0.017 Sum_probs=85.7
Q ss_pred cCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC--------chhHHHHHHHHHhhhhhcCCCChhh
Q 020060 128 KGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD--------GNSWYNLGNACLTSFFVTGSWDHSK 198 (331)
Q Consensus 128 ~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~~~~~~~~~~~ 198 (331)
+.|.+ +.|.......-..|+...+ +-.++-...|++|+..-|.. ...|...+.. ... ++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d--~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei---------~D 75 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSD--ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAI---------QE 75 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCH--HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHH---------HC
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchh--hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHh---------cC
Confidence 46666 7888877777766765544 44678888999998765532 2344445533 344 89
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
.++|...|+.+++. ....+.+|...|..-.++|+...|.+.+.+|+.+.|....
T Consensus 76 ~d~aR~vy~~a~~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 76 PDDARDYFQMARAN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp GGGCHHHHHHHHHH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 99999999999985 3666888999999999999999999999999999998653
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.11 E-value=0.0028 Score=47.42 Aligned_cols=82 Identities=9% Similarity=0.126 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCCCCCch---------hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchh-cCC-------
Q 020060 155 IVEESIQHAKEAITLDVKDGN---------SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDER-MKS------- 217 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~---------~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~------- 217 (331)
.|+.|+-....++....+++. ++..+|.+++.. ++|..|...|++++.... .+.
T Consensus 35 LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~---------~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 35 LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD---------KEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHCC---------
T ss_pred hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc---------cHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 488888888887765443333 678899999988 999999999999986321 011
Q ss_pred ---------------ChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 218 ---------------NPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 218 ---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
+.++.+.++.||..+|++.+|+..++..
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1256788999999999999999887653
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.05 E-value=0.017 Score=41.91 Aligned_cols=72 Identities=14% Similarity=0.066 Sum_probs=58.1
Q ss_pred hHHHHHhhhhhhccccc--HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHH
Q 020060 64 ATYEYLKGKILDVVPEY--RKDAEDHLSKAVKLNPS-LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KIL 135 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~--~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~ 135 (331)
..+.+..+.++....+- ..+++..++..+...|. .-+.++.+|..+++.|+|++|..+.+..++..|++ .+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 44555666666554431 36899999999998884 56899999999999999999999999999999998 443
No 233
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.96 E-value=0.0059 Score=45.64 Aligned_cols=109 Identities=10% Similarity=0.014 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHhcC---CCh-------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLALSKG---PNK-------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~-------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
+++.-.......|.|+.|+.....++.+. |+. .++..+|.+++..+ +|..|...|+++++..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~--------eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK--------EYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHH
Confidence 44555666778888999988888876554 221 46788999999776 4999999999986531
Q ss_pred ---CCC----------------------chhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhH
Q 020060 171 ---VKD----------------------GNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNC 225 (331)
Q Consensus 171 ---p~~----------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~l 225 (331)
++. .++.+.++.||..+ +++.+|+..++.+- .....+.+...|
T Consensus 94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l---------~~~~~Ai~~Le~Ip---~k~Rt~kvnm~L 161 (167)
T 3ffl_A 94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL---------KQDKDAIAILDGIP---SRQRTPKINMLL 161 (167)
T ss_dssp HCC--------------------CCCCHHHHHHHHHHHHHHT---------TCHHHHHHHHHTSC---GGGCCHHHHHHH
T ss_pred HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH---------CCHHHHHHHHhcCC---chhcCHHHHHHH
Confidence 111 15778899999999 99999999988653 225677777777
Q ss_pred HHHH
Q 020060 226 ATVN 229 (331)
Q Consensus 226 a~~~ 229 (331)
|..|
T Consensus 162 akLy 165 (167)
T 3ffl_A 162 ANLY 165 (167)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7765
No 234
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.51 E-value=0.033 Score=48.43 Aligned_cols=163 Identities=9% Similarity=0.045 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC---h---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCC
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN---K---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKD 173 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 173 (331)
.+.+.+|..|...|++++-..++.......+. . .....+-..+..... ..+.-++.+.++++...+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~-------~~~~~~~~~~~~~~~a~~~ 92 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDA-------GTGIEVQLCKDCIEWAKQE 92 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCC-------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777666666655333221 1 111222222222211 1222233333333322222
Q ss_pred chhH------HHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCCh----hHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 174 GNSW------YNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNP----DLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 174 ~~~~------~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
-..| ..+|..|+.. |+|.+|...+.+..+.....++. +++.....+|..++++.++..++.
T Consensus 93 ~r~flr~~l~~kL~~l~~~~---------~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 93 KRTFLRQSLEARLIALYFDT---------ALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2333 2689999988 99999999999988743223333 447788889999999999999999
Q ss_pred HHHhcCC---CCcH---H--HHHHHHHH-HHHHHHHHHHhhhhh
Q 020060 244 ASALKDP---SLNA---T--EEVQMMVN-LLDKIENLLKGHAKT 278 (331)
Q Consensus 244 ~al~~~~---~~~~---~--~~l~~~~~-~l~~~~~a~~~~~~a 278 (331)
++..... .++. . ..-|..+. ..+++..|...|.++
T Consensus 164 ~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 164 SARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 9987542 2222 1 44444555 566666666555554
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.02 Score=53.99 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=78.2
Q ss_pred hCC-hhHHHHHHHHHHhcCCChHHHhhHHHHHH--HhccCchhHHHHHHHHHHHHHHHhc--------CCCCCc------
Q 020060 112 KGD-LPAAKNCFNLALSKGPNKKILCQLSMLER--SMAQGSENQAEIVEESIQHAKEAIT--------LDVKDG------ 174 (331)
Q Consensus 112 ~g~-~~~A~~~~~~al~~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~A~~~~~~al~--------~~p~~~------ 174 (331)
.+. ++.|+..+++..+.+|....++..+.+.. ..+. +--+|+..+.++++ ..+.+.
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~-------~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIET-------KELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGG-------GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 444 57789999999888887755444433322 1111 12345555555442 222221
Q ss_pred ----hhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHH
Q 020060 175 ----NSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEAS 245 (331)
Q Consensus 175 ----~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 245 (331)
..+..-+..+... |+++-|+.+.++++.. .|.+-..|+.|+.+|..+|+|+.|+-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K---------~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNR---------GDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhcc---------CcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1223334445555 9999999999999994 4999999999999999999999999877665
No 236
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.44 E-value=0.067 Score=48.05 Aligned_cols=77 Identities=17% Similarity=0.043 Sum_probs=65.2
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER 143 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~ 143 (331)
++..+|.+......+ ..|..+|.+|+.+.|+....+..||.+....|+.-+|+-+|.+++...... .+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~-~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQT-SQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHH-HHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 556678887777886 899999999999999999999999999999999999999999998765333 66666666554
No 237
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.40 E-value=0.087 Score=47.34 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 176 SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 176 ~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
.+..||.+.... ..+..|..+|.+|.... |.+...|+.+|.+....|+.-+|+-+|.+++....-.+.+
T Consensus 154 ~l~~LGDL~RY~---------~~~~~A~~~Y~~A~~~~--P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 154 CLVHLGDIARYR---------NQTSQAESYYRHAAQLV--PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHT---------TCHHHHHHHHHHHHHHC--TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHcccHHHHH---------HHHHHHHHHHHHHHHhC--CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 445677777766 77899999999999955 9999999999999999999999999999999876666665
Q ss_pred -HHHHHHHHH
Q 020060 256 -EEVQMMVNL 264 (331)
Q Consensus 256 -~~l~~~~~~ 264 (331)
.++..++..
T Consensus 223 ~~nL~~~f~~ 232 (497)
T 1ya0_A 223 STNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 777666654
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.092 Score=49.58 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=80.9
Q ss_pred cccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH---HhCChhHHHHHHHHHHhc--------CCCh-----------H
Q 020060 76 VVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIW---KKGDLPAAKNCFNLALSK--------GPNK-----------K 133 (331)
Q Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~--------~~~~-----------~ 133 (331)
..+++.+.|+..+++....+|.... ++..+.+.. ...+--+|+....++++- .+.+ .
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 338 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSD 338 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchH
Confidence 3455337799999999999886543 333333222 123345677777777642 1221 1
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+..-+..+... ++++-|+++.++|+...|..-..|..|+.+|..+ |+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K--------~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l---------~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNR--------GDYELALGVSNTSTELALDSFESWYNLARCHIKK---------EEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHT--------TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT---------TCHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc--------CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHh---------ccHHHHHHHHhcC
Confidence 222234444433 4699999999999999999999999999999999 9999999888766
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.18 Score=38.30 Aligned_cols=43 Identities=19% Similarity=0.290 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH
Q 020060 154 EIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE 210 (331)
Q Consensus 154 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 210 (331)
|+++.|.+..+.. ++...|..||...+.. |+++-|..+|.++-
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~---------gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQ---------GNASLAEMIYQTQH 61 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHc---------CChHHHHHHHHHhC
Confidence 3588888887765 5678999999999988 99999999999864
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.19 E-value=0.16 Score=41.20 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=55.2
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
.+...|+. ++|++.....++.+|.++.....+...++-.|+++.|...++.+.+++|..
T Consensus 6 ~ll~~g~L-~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQL-QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCH-HHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCH-HHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 35567885 999999999999999999999999999999999999999999999999997
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.52 E-value=1.1 Score=33.86 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=64.4
Q ss_pred hcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHH
Q 020060 75 DVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAE 154 (331)
Q Consensus 75 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 154 (331)
...|++ +.|.+..++. ++...|..+|......|+++-|..+|.++-. +..+..+|...|+
T Consensus 16 L~lg~l-~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~------- 75 (177)
T 3mkq_B 16 LEYGNL-DAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGD------- 75 (177)
T ss_dssp HHTTCH-HHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTC-------
T ss_pred HhcCCH-HHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCC-------
Confidence 456886 8899887665 6688999999999999999999999998621 2233344444442
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+.-.+..+.+.... -++....+++.+ |+++++++.|.+.
T Consensus 76 -~e~L~kla~iA~~~g-----~~n~af~~~l~l---------Gdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 -VNKLSKMQNIAQTRE-----DFGSMLLNTFYN---------NSTKERSSIFAEG 115 (177)
T ss_dssp -HHHHHHHHHHHHHTT-----CHHHHHHHHHHH---------TCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHCc-----cHHHHHHHHHHc---------CCHHHHHHHHHHC
Confidence 333333333333222 123334445555 8888888887654
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.46 E-value=1.1 Score=33.55 Aligned_cols=39 Identities=8% Similarity=-0.031 Sum_probs=31.5
Q ss_pred CCChhH-HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 216 KSNPDL-YFNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 216 ~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
|.+.+. +..+|.++...|+.++|+.+|..+...+|-.+.
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 555554 677899999999999999999999988775443
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=94.37 E-value=1.2 Score=33.44 Aligned_cols=171 Identities=19% Similarity=0.112 Sum_probs=105.3
Q ss_pred HHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHH--hcC-------------
Q 020060 65 TYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLAL--SKG------------- 129 (331)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~------------- 129 (331)
+.-..++..++-.|+| ..++-++.+ -+...+.+..+.||...++|..|+.+++..+ +++
T Consensus 34 eY~lL~~I~LyyngEY-~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ff 107 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEY-TRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMF 107 (242)
T ss_dssp CTHHHHHHHHHHTTCH-HHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTS
T ss_pred HHHhhhhhhhhhcchH-hHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceee
Confidence 3445677788888998 777776633 3567788889999999999999999999998 322
Q ss_pred --CCh-H-HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhh-hhh---cCCCChh----
Q 020060 130 --PNK-K-ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTS-FFV---TGSWDHS---- 197 (331)
Q Consensus 130 --~~~-~-~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~---~~~~~~~---- 197 (331)
|.+ + .+..+|.++...| +.++|+.++......+|-.+.+-+.+ |... +.. +.-..+|
T Consensus 108 vd~~DkEfFy~l~a~lltq~g--------~r~EaI~y~~~Sf~~~~lf~~vEnli---yeN~vp~~~d~~~i~~~~~~~i 176 (242)
T 3kae_A 108 VDPGDEEFFESLLGDLCTLSG--------YREEGIGHYVRSFGKSFLFSPVENLL---LENKVPQKRDKENVRQTGRRGI 176 (242)
T ss_dssp CCTTCHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHCCCHHHHHHHH---HTTCCCCCC-----------CH
T ss_pred eccchHHHHHHHHHHHHHHhc--------CHHHhhhHhhhhcCCccccchHHHHH---hhcCCCcccchHHHHhhhhccc
Confidence 223 2 4455899999887 48999999999988776443332111 1100 000 0000000
Q ss_pred --hHHHHHHHHHHHH-----h--chhcCCChhH-HhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 198 --KLLQSLKAYQNAE-----K--DERMKSNPDL-YFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 198 --~~~~A~~~~~~al-----~--~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
.+-.....+...+ + .+..|+-... -.+.+..++.+|-.++...+|....+.+|..
T Consensus 177 ~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 177 EEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred hhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 1111111111111 1 0112333333 3456777888999999999999999888864
No 244
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.02 E-value=0.75 Score=43.79 Aligned_cols=110 Identities=14% Similarity=0.117 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHH
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGN 182 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 182 (331)
..+...+...|.++.|+...+ +....+.+ ...+| ++++|.+..+ ..+++..|..+|.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~-------~~~~~f~~---~l~~~--------~~~~A~~~~~-----~~~~~~~W~~la~ 689 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP-------DQDQKFEL---ALKVG--------QLTLARDLLT-----DESAEMKWRALGD 689 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC-------CHHHHHHH---HHHHT--------CHHHHHHHHT-----TCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC-------Ccchheeh---hhhcC--------CHHHHHHHHH-----hhCcHhHHHHHHH
Confidence 555666677777777765442 22222222 23333 5888888754 2356788999999
Q ss_pred HHHhhhhhcCCCChhhHHHHHHHHHHHHh------chhcCCChhHHhhHHHHHHHhhcHHHHHHHHHH
Q 020060 183 ACLTSFFVTGSWDHSKLLQSLKAYQNAEK------DERMKSNPDLYFNCATVNKYLENYERALSGFEA 244 (331)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 244 (331)
.+... ++++.|..+|.++-. +.....+.+.+..++......|++..|...|.+
T Consensus 690 ~al~~---------~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~ 748 (814)
T 3mkq_A 690 ASLQR---------FNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI 748 (814)
T ss_dssp HHHHT---------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHc---------CCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 99988 999999999987632 111244555556666666666666666655543
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.54 Score=41.48 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=74.5
Q ss_pred hhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCC---Ch---
Q 020060 62 QRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP---SLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGP---NK--- 132 (331)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~--- 132 (331)
....++..+|..|...|++ +.|.++|.++..... .-.+.+.....++...+++..+..++.++-.... +.
T Consensus 129 e~~~~~~~la~~~~~~Gd~-~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDK-DNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCC-TTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 3455778899999999998 999999999887533 3467888899999999999999999999965532 22
Q ss_pred -HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCC
Q 020060 133 -KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLD 170 (331)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~ 170 (331)
......|.++... ++|.+|...|.+++...
T Consensus 208 ~~lk~~~gl~~l~~--------r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAV--------RNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGT--------SCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh--------ChHHHHHHHHHHHhccC
Confidence 1222234444433 35999999998887644
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.89 E-value=2.9 Score=36.21 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=105.6
Q ss_pred hhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHH-----HHHHHHHHHH-hCChhHHHHHHHHHHhcCCCh-H--
Q 020060 63 RATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADA-----WLCLGSCIWK-KGDLPAAKNCFNLALSKGPNK-K-- 133 (331)
Q Consensus 63 ~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~-~-- 133 (331)
...+.+.+|..|...|++ ++-.+++......-+..+.+ -..+-..+.. .+..+.-+.....+++-..+. .
T Consensus 18 ~e~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 18 KEQGILQQGELYKQEGKA-KELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHHTCH-HHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999986 77777776655443333222 2222233322 233344444444444322222 1
Q ss_pred ----HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCC--C----chhHHHHHHHHHhhhhhcCCCChhhHHHHH
Q 020060 134 ----ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVK--D----GNSWYNLGNACLTSFFVTGSWDHSKLLQSL 203 (331)
Q Consensus 134 ----~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~ 203 (331)
.-..+|..+...| +|.+|.+.+.+..+.-.. + .+++..-..+|... +++.++.
T Consensus 97 lr~~l~~kL~~l~~~~~--------~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~---------~n~~k~k 159 (394)
T 3txn_A 97 LRQSLEARLIALYFDTA--------LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL---------SNLPKAR 159 (394)
T ss_dssp HHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT---------TCHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh---------ccHHHHH
Confidence 2236888888776 499998888887763211 1 23445556667766 8999999
Q ss_pred HHHHHHHhchhc-CCChhH----HhhHHHHHH-HhhcHHHHHHHHHHHHhcCCC
Q 020060 204 KAYQNAEKDERM-KSNPDL----YFNCATVNK-YLENYERALSGFEASALKDPS 251 (331)
Q Consensus 204 ~~~~~al~~~~~-~~~~~~----~~~la~~~~-~~g~~~~A~~~~~~al~~~~~ 251 (331)
..+.++...... +.+|.. ...-|..+. ..++|..|..+|-.++.-...
T Consensus 160 ~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~ 213 (394)
T 3txn_A 160 AALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDS 213 (394)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccc
Confidence 999988763222 244433 566788888 899999999999998764433
No 247
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.33 E-value=0.23 Score=43.82 Aligned_cols=86 Identities=15% Similarity=0.143 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCC-ChhHHhhHHHHHHHhh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKS-NPDLYFNCATVNKYLE 233 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~la~~~~~~g 233 (331)
.+++.+..+.+-......-..++..+|..|... |+++.|.+.|.++......+. -.+.+.....++...+
T Consensus 112 ~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~---------Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~ 182 (429)
T 4b4t_R 112 ELNEKIQKLEEDDEGELEQAQAWINLGEYYAQI---------GDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN 182 (429)
T ss_dssp HHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHH---------CCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Confidence 355555554432223344556888999999998 999999999999887442222 2366888888899999
Q ss_pred cHHHHHHHHHHHHhcC
Q 020060 234 NYERALSGFEASALKD 249 (331)
Q Consensus 234 ~~~~A~~~~~~al~~~ 249 (331)
++..+..++.++....
T Consensus 183 d~~~~~~~~~ka~~~~ 198 (429)
T 4b4t_R 183 DQLYVKEKLEAVNSMI 198 (429)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999999999987653
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.04 E-value=1.4 Score=38.23 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=64.0
Q ss_pred HHhCChhHHHHHHHHHHhcCCCh-----------------------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 110 WKKGDLPAAKNCFNLALSKGPNK-----------------------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al~~~~~~-----------------------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
...|+.+.|...+.+++.+.... .+...++..+...| ++.+++..+..+
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g--------~~~~a~~~l~~~ 197 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG--------RASAVIAELEAL 197 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHH
Confidence 34566777777777777664221 12223344444444 599999999999
Q ss_pred hcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh
Q 020060 167 ITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK 211 (331)
Q Consensus 167 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 211 (331)
+..+|-+-.+|..+..++... |+..+|+..|++.-+
T Consensus 198 ~~~~P~~E~~~~~lm~al~~~---------Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 198 TFEHPYREPLWTQLITAYYLS---------DRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHSTTCHHHHHHHHHHHHTT---------TCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHH
Confidence 999999999999999999998 999999999998765
No 249
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.99 E-value=0.91 Score=43.22 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=26.2
Q ss_pred HHHhCChhHHHHHHHHHHhcCCChHHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 109 IWKKGDLPAAKNCFNLALSKGPNKKILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 109 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
....|+++.|.+..+. -.+...|..+|..+...| +++.|..+|.++
T Consensus 662 ~l~~~~~~~A~~~~~~----~~~~~~W~~la~~al~~~--------~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTD----ESAEMKWRALGDASLQRF--------NFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTT----CCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHh----hCcHhHHHHHHHHHHHcC--------CHHHHHHHHHHc
Confidence 3456666666665322 122256666666666554 366666666654
No 250
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.92 E-value=0.52 Score=40.92 Aligned_cols=56 Identities=11% Similarity=0.037 Sum_probs=37.9
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHH
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLA 125 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 125 (331)
.++..+...|++ .+|+..+..++..+|-+-.+|..+-.++...|+..+|+..|+++
T Consensus 176 ~~~~~~l~~g~~-~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 176 AKAEAEIACGRA-SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555566665 66777777777777777777777777777777777777776665
No 251
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.46 E-value=0.12 Score=46.33 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=13.5
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
++.+|.++...++|.+|..++..|+...|
T Consensus 273 ~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 273 FFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444433
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.67 E-value=2.2 Score=34.59 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT 255 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 255 (331)
|++++|+......++.+ |.|......+-..+.-.|+++.|.+-++.+.+++|+....
T Consensus 11 g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 11 GQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp TCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred CCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 89999999999999955 9999999999999999999999999999999999997764
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.49 E-value=3.5 Score=41.26 Aligned_cols=100 Identities=12% Similarity=-0.070 Sum_probs=67.2
Q ss_pred HhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC-CCh-----------------------HHHhhHHHHHHHhcc
Q 020060 92 VKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG-PNK-----------------------KILCQLSMLERSMAQ 147 (331)
Q Consensus 92 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~-----------------------~~~~~l~~~~~~~g~ 147 (331)
+...|.++...+.+|.++...|++++|..+|+++-.-- .+. ..+..+..++...+
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~- 913 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES- 913 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS-
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC-
Confidence 34467777778999999999999999999999884211 110 12233444444333
Q ss_pred CchhHHHHHHHHHHHHHHHhcCCCCCch-----hHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHH
Q 020060 148 GSENQAEIVEESIQHAKEAITLDVKDGN-----SWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQN 208 (331)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 208 (331)
.++.++++.+.|++..+.+.. .|.++-..+... |+|++|...+..
T Consensus 914 -------~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l---------~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 914 -------AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA---------GKFDAAHVALMV 963 (1139)
T ss_dssp -------CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH---------CCSGGGGHHHHH
T ss_pred -------CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhh---------CCHHHHHHHHHh
Confidence 478888888888875543322 566666777777 888888776643
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.25 E-value=9.1 Score=33.76 Aligned_cols=100 Identities=16% Similarity=-0.050 Sum_probs=74.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCC--cHHHHHHHHHHHHHhCChhHHHHHHHHHHh----cCC
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPS--LADAWLCLGSCIWKKGDLPAAKNCFNLALS----KGP 130 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~~ 130 (331)
..++++...++.++...|++ .+|...+.....- .+. -.+.+.....+|...+++..|...++++.. ..+
T Consensus 134 ~erarl~~~La~i~e~~g~~-~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~ 212 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKI-DEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK 212 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC
Confidence 35788888999999999998 9999999887532 111 256778888999999999999999998742 222
Q ss_pred Ch----HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 131 NK----KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 131 ~~----~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
.. ..+...|.++..-+ +|.+|..+|.+++..
T Consensus 213 ~~~lk~~~~~~~~~~~~~e~--------~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 213 YESLKLEYYNLLVKISLHKR--------EYLEVAQYLQEIYQT 247 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHhc
Confidence 22 34445666666444 599999999988764
No 255
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.90 E-value=10 Score=34.02 Aligned_cols=71 Identities=21% Similarity=0.145 Sum_probs=59.6
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-------HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCC
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-------ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 131 (331)
+....+.++..+=+.|...+.| ++|..+..++. .|.. ...++.+|.++...++|.+|..++..|+...|.
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y-~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEV-DSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCS-TTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred CcchhHHHHHHHHHHHHccCcH-HHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 5567788888899999999998 99999999985 3321 456788999999999999999999999998775
Q ss_pred h
Q 020060 132 K 132 (331)
Q Consensus 132 ~ 132 (331)
+
T Consensus 303 ~ 303 (523)
T 4b4t_S 303 N 303 (523)
T ss_dssp S
T ss_pred c
Confidence 4
No 256
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=87.65 E-value=7.4 Score=38.21 Aligned_cols=98 Identities=8% Similarity=-0.120 Sum_probs=64.6
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC--CChHHHhh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKL----NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG--PNKKILCQ 137 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 137 (331)
...+..+=..|...|+. ++|...|.+.... ..-+...|..+-..|.+.|+.++|...|++..+.. |+...+..
T Consensus 127 ~~TynaLIdglcK~G~l-eeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQL-PLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCH-HHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 33455666677777885 8888888654322 22346677778888888888888888888876543 55555655
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHHHHHHhcC
Q 020060 138 LSMLERSMAQGSENQAEIVEESIQHAKEAITL 169 (331)
Q Consensus 138 l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 169 (331)
+-..+.+.|. ..++|.+++++....
T Consensus 206 LI~glcK~G~-------~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 206 ALQCMGRQDQ-------DAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHTC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-------cHHHHHHHHHHHHHc
Confidence 6556665542 246777888777653
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=86.76 E-value=9.5 Score=37.46 Aligned_cols=98 Identities=3% Similarity=-0.175 Sum_probs=74.7
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcC----CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITL----DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
.+..+-..+.+.| +.++|...|.+..+. ..-+..+|+.|-..|... |++++|.+.|++.
T Consensus 129 TynaLIdglcK~G--------~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~---------G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 129 RLLAFFKCCLLTD--------QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ---------GAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHHT--------CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHH---------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 4555667777665 599999999765432 233667899999999888 9999999999999
Q ss_pred HhchhcCCChhHHhhHHHHHHHhhc-HHHHHHHHHHHHhcC
Q 020060 210 EKDERMKSNPDLYFNCATVNKYLEN-YERALSGFEASALKD 249 (331)
Q Consensus 210 l~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 249 (331)
......| |...|..+-.++.+.|+ .++|...|++.....
T Consensus 192 ~~~G~~P-DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 192 KDAGLTP-DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHTTCCC-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCC-cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8754333 55667888888888887 478889999887754
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.65 E-value=17 Score=36.46 Aligned_cols=92 Identities=14% Similarity=0.000 Sum_probs=67.4
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcC-----------------------CCcHHHHHHHHHHHHHhCChhHHHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLN-----------------------PSLADAWLCLGSCIWKKGDLPAAKNCF 122 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~-----------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 122 (331)
..|.+|.++...|++ ++|..+|+++..-- ...+..|..+..++...+.++.++.+-
T Consensus 844 ~~yl~g~~~L~~ge~-~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa 922 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEA-VKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFS 922 (1139)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 458899999999998 99999999874211 112345667778888999999999999
Q ss_pred HHHHhcCCCh------HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHH
Q 020060 123 NLALSKGPNK------KILCQLSMLERSMAQGSENQAEIVEESIQHAKEA 166 (331)
Q Consensus 123 ~~al~~~~~~------~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~a 166 (331)
+.|++..+.+ ..|.++-.....+| +|++|...+...
T Consensus 923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~--------~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 923 LLADASKETDDEDLSIAITHETLKTACAAG--------KFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHCCSCCHHHHHHHHHHHHHHHHHHC--------CSGGGGHHHHHH
T ss_pred HHHHHhccCCChhhHHHHHHHHHHHHHhhC--------CHHHHHHHHHhC
Confidence 9999876543 24556666666666 477777766443
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.44 E-value=17 Score=30.32 Aligned_cols=105 Identities=10% Similarity=0.057 Sum_probs=59.6
Q ss_pred HHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHh--
Q 020060 134 ILCQLSMLERSMAQGSENQAEIVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEK-- 211 (331)
Q Consensus 134 ~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-- 211 (331)
....+..++.........+..-..+|++.-.+.=...-.++..+..+|..|... |++.+|..+|-..-.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e---------~~~~~A~~H~i~~~~~s 164 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEG---------DFVYEAERYFMLGTHDS 164 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHT---------TCHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhc---------CCHHHHHHHHHhCCCcc
Confidence 333444444433322222333345555554443222335788999999999988 899999887742210
Q ss_pred ------------ch---hcCCChhHHhhHHH-HHHHhhcHHHHHHHHHHHHh
Q 020060 212 ------------DE---RMKSNPDLYFNCAT-VNKYLENYERALSGFEASAL 247 (331)
Q Consensus 212 ------------~~---~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~ 247 (331)
.. ..|...+.+...+. .|...|+...|...|....+
T Consensus 165 ~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 165 MIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 00 11223344555554 45688999998888776543
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.43 E-value=21 Score=31.44 Aligned_cols=190 Identities=7% Similarity=-0.038 Sum_probs=109.4
Q ss_pred cccHHHHHHHHHHHHhc---C---CCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHH-HhccCc
Q 020060 78 PEYRKDAEDHLSKAVKL---N---PSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLER-SMAQGS 149 (331)
Q Consensus 78 ~~~~~~A~~~~~~al~~---~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~-~~g~~~ 149 (331)
|++ ++|++.+...-+. . +....+...+..++...|+++...+++.-........ .+...+..... .+....
T Consensus 30 ~~~-~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDC-NSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHH-HHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCH-HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 565 7787766443332 2 3356788888999999999998888776554433222 22222221111 110000
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCC-------CchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCC----
Q 020060 150 ENQAEIVEESIQHAKEAITLDVK-------DGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSN---- 218 (331)
Q Consensus 150 ~~~~~~~~~A~~~~~~al~~~p~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---- 218 (331)
..+.+.-+......-..... .......|+.++... |++.+|...+...........+
T Consensus 109 ---~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~---------g~~~eA~~iL~~l~~Et~~~~~~~~k 176 (445)
T 4b4t_P 109 ---SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEE---------GKIDEAADILCELQVETYGSMEMSEK 176 (445)
T ss_dssp ---TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHCSSSCHHHH
T ss_pred ---chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 00011111111111111111 123446789999988 9999999999988753211222
Q ss_pred hhHHhhHHHHHHHhhcHHHHHHHHHHHHh---cCCCCcH----H-HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020060 219 PDLYFNCATVNKYLENYERALSGFEASAL---KDPSLNA----T-EEVQMMVNLLDKIENLLKGHAKTKR 280 (331)
Q Consensus 219 ~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~~~~~~----~-~~l~~~~~~l~~~~~a~~~~~~a~~ 280 (331)
.+.+.....++...+++.+|...+.++.. -.+.++. . ...+.++...+++.+|.+.|.++..
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 25578888899999999999999999753 2233332 1 5555666666777777766666654
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=79.91 E-value=38 Score=31.29 Aligned_cols=118 Identities=10% Similarity=-0.037 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHH
Q 020060 41 ESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKN 120 (331)
Q Consensus 41 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (331)
..+.|...+.........++......+..++..+...+.. .++...+.+.....+++.......+. -...|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVT-DEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCC-HHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHH
Confidence 3355666665443211223445555565666666666633 66888888876655544333333344 456799999999
Q ss_pred HHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHhc
Q 020060 121 CFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAIT 168 (331)
Q Consensus 121 ~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 168 (331)
+|.+.-.-.... ...+-+|.++..+|. .++|...|+++..
T Consensus 307 ~~~~l~~~~~~~~r~~YW~~ra~~~~g~--------~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRYWQADLLLERGR--------EAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGGSHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHT
T ss_pred HHHHccccccccHhHHHHHHHHHHHcCC--------HHHHHHHHHHHhc
Confidence 998754422222 566778888887774 7889999988875
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.55 E-value=16 Score=28.15 Aligned_cols=73 Identities=14% Similarity=0.024 Sum_probs=53.6
Q ss_pred CCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 170 DVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 170 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
||....+|...+..+. . +...++...|.-..........+..|...|..+...|++.+|...|+.+++..
T Consensus 76 D~RYLklWl~Ya~~~~-~---------~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 76 DPRFLKIWIWYINLFL-S---------NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp CHHHHHHHHHHHHHHS-T---------TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhc-c---------cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444456666666541 1 34567778888777654446677779999999999999999999999999976
Q ss_pred CCC
Q 020060 250 PSL 252 (331)
Q Consensus 250 ~~~ 252 (331)
...
T Consensus 146 A~P 148 (202)
T 3esl_A 146 CRP 148 (202)
T ss_dssp CBS
T ss_pred Ccc
Confidence 654
No 263
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=75.94 E-value=4.6 Score=31.34 Aligned_cols=37 Identities=32% Similarity=0.399 Sum_probs=25.5
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL 98 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (331)
.+.+.+.|.+|..+...++| .+|.+++..|+...|..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y-~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDF-KQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHCCHh
Confidence 35566677777777777776 77777777777776654
No 264
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=73.86 E-value=16 Score=26.98 Aligned_cols=61 Identities=11% Similarity=0.006 Sum_probs=46.5
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc---HHH-----H-HHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL---ADA-----W-LCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~-----~-~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
-+..|..++..|+| -+|.+.++......+.. ... . ...|..+.+.|+...|...+.+++..
T Consensus 35 ~~~~~i~lFn~g~y-feaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 35 AVVHGVRLYNSGEF-HESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc-hHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34567778888998 89999999999876544 222 2 33455677899999999999999864
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=70.71 E-value=66 Score=29.67 Aligned_cols=93 Identities=4% Similarity=-0.134 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhhh
Q 020060 199 LLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHAK 277 (331)
Q Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~~ 277 (331)
..++...+.+.... +.+....-.++......|++..|..+|.+.-......... .++++++..+|+..++...|.+
T Consensus 268 ~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~ 344 (618)
T 1qsa_A 268 TDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQ 344 (618)
T ss_dssp CHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44566666665431 2333333233334456799999999997754432233334 9999999999999999888777
Q ss_pred hhhHHHHHhhccccccC
Q 020060 278 TKRVASLASSLAVVKLS 294 (331)
Q Consensus 278 a~~l~~~~~~~~~~~~~ 294 (331)
+..-......+....+.
T Consensus 345 ~a~~~~fYg~lAa~~Lg 361 (618)
T 1qsa_A 345 LMQQRGFYPMVAAQRIG 361 (618)
T ss_dssp HHTSCSHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHcC
Confidence 76543344444444443
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=69.59 E-value=11 Score=23.70 Aligned_cols=32 Identities=6% Similarity=-0.005 Sum_probs=28.4
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCcH
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSLNA 254 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 254 (331)
..+|..+...|++++|..+|-+|+.+.|.-..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 45889999999999999999999999998664
No 267
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.26 E-value=51 Score=27.39 Aligned_cols=28 Identities=14% Similarity=-0.153 Sum_probs=25.8
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGFE 243 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~~ 243 (331)
-++|..+..+|..+..-|++.+|..+|-
T Consensus 131 ~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 131 FGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 5789999999999999999999999885
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.17 E-value=34 Score=24.99 Aligned_cols=53 Identities=8% Similarity=-0.023 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
++...|.-..........+..|...|..+...|++.+|...|+.+++......
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 36777777776444466777799999999999999999999999999765543
No 269
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=66.67 E-value=23 Score=22.82 Aligned_cols=55 Identities=18% Similarity=0.009 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHH-------HHHHhcCCCCcHH-HHHHHHHHHHHHH
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGF-------EASALKDPSLNAT-EEVQMMVNLLDKI 268 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-------~~al~~~~~~~~~-~~l~~~~~~l~~~ 268 (331)
.-.++|+....+|++.+ ..|++++|+.+| ..++...|+.... .....+...+.+.
T Consensus 14 ~~~~~Ai~lv~~Ave~D-----------------~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RA 76 (83)
T 2w2u_A 14 MLEEMARKYAINAVKAD-----------------KEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRI 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34567777777777643 345555555544 4444556665543 3334444444333
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=66.00 E-value=10 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+|..+...|++++|+.+|-+|+...|.-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 568999999999999999999999998875
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=64.92 E-value=25 Score=22.61 Aligned_cols=15 Identities=20% Similarity=-0.195 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhch
Q 020060 199 LLQSLKAYQNAEKDE 213 (331)
Q Consensus 199 ~~~A~~~~~~al~~~ 213 (331)
.++|+....+|++.+
T Consensus 8 ~~~Ai~lv~~Ave~D 22 (83)
T 2v6y_A 8 EDMARKYAILAVKAD 22 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 467788888877643
No 272
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.92 E-value=65 Score=27.06 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=15.2
Q ss_pred CCChhHHhhHHHHHHHhhcHHHHHHHH
Q 020060 216 KSNPDLYFNCATVNKYLENYERALSGF 242 (331)
Q Consensus 216 ~~~~~~~~~la~~~~~~g~~~~A~~~~ 242 (331)
-.+|..+..+|..+..-+++.+|..+|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 345555555555555555555555554
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.20 E-value=76 Score=26.63 Aligned_cols=83 Identities=14% Similarity=0.111 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHH-----------h---chhcCCChh
Q 020060 155 IVEESIQHAKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAE-----------K---DERMKSNPD 220 (331)
Q Consensus 155 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-----------~---~~~~~~~~~ 220 (331)
-..+|+..-.+.=...-.++..+..+|..|... +++.+|..+|-..- - ....|...+
T Consensus 117 fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e---------~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~d 187 (336)
T 3lpz_A 117 FVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEE---------GEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAP 187 (336)
T ss_dssp HHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHT---------TCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHH
T ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHH
Confidence 355555555542222345788999999999987 88888877763110 0 001133445
Q ss_pred HHhhHHHH-HHHhhcHHHHHHHHHHHH
Q 020060 221 LYFNCATV-NKYLENYERALSGFEASA 246 (331)
Q Consensus 221 ~~~~la~~-~~~~g~~~~A~~~~~~al 246 (331)
.+...|.+ |...++...|...|....
T Consensus 188 lfiaRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 188 LYCARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555554 668889998887655544
No 274
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.10 E-value=95 Score=30.35 Aligned_cols=51 Identities=6% Similarity=-0.032 Sum_probs=30.2
Q ss_pred HHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Q 020060 105 LGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI 167 (331)
Q Consensus 105 lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al 167 (331)
+...+...|.++-|.. .+..-|.+ ..-+.+|.++...|+ +++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge--------~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKE--------AVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTC--------HHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHh
Confidence 4455556666654432 33444544 334667777777763 777777777654
No 275
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=58.33 E-value=18 Score=23.73 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHH
Q 020060 101 AWLCLGSCIWKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al 126 (331)
.+-.++..+...|.|++|+.+.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 33445555556666666665555543
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=57.52 E-value=40 Score=24.40 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
|+-++--+.+...+. ..+-+|+.+..+|.+|.+.|+..+|...+.+|=+..
T Consensus 105 ~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 105 GKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp TCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 555555555555455 337789999999999999999999999999886543
No 277
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=55.01 E-value=38 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 99 ADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
....+.+|.+++..++|.+|..++..|+...|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 4567889999999999999999999999998765
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=53.97 E-value=56 Score=23.62 Aligned_cols=48 Identities=21% Similarity=0.200 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhcC
Q 020060 82 KDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSKG 129 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (331)
++-...+...+.-.+-.+..+..+|.+|...|+..+|-+.+.+|.+..
T Consensus 108 DqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 108 DKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333334444344445557777888888888888888888887776654
No 279
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=52.23 E-value=45 Score=32.66 Aligned_cols=79 Identities=11% Similarity=-0.009 Sum_probs=59.4
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHhhhhhcCCCChhhHHHHHHHHHHHHhchhcC-------------------C--ChhH
Q 020060 163 AKEAITLDVKDGNSWYNLGNACLTSFFVTGSWDHSKLLQSLKAYQNAEKDERMK-------------------S--NPDL 221 (331)
Q Consensus 163 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------------------~--~~~~ 221 (331)
.++.+...|.++..-+.+|.+++.. |++++|..+|+++-..-..+ . ....
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~---------ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~Y 899 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKS---------KEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCY 899 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHT---------TCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHH
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHc---------CCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHH
Confidence 3445667788888889999999999 99999999999876310000 0 0124
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhcCC
Q 020060 222 YFNCATVNKYLENYERALSGFEASALKDP 250 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 250 (331)
|.....++...+-++-++..-+.|+..-.
T Consensus 900 Y~hV~~LFE~~~a~~~vi~fA~lAI~~~~ 928 (950)
T 4gq2_M 900 YLHLSKKLFEESAYIDALEFSLLADASKE 928 (950)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Confidence 67778888889999999999999997543
No 280
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=51.99 E-value=19 Score=22.94 Aligned_cols=27 Identities=15% Similarity=0.042 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 102 WLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 102 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
...+|.=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 356788888899999999999988754
No 281
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.85 E-value=15 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=26.0
Q ss_pred CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHH
Q 020060 59 SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV 92 (331)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 92 (331)
.+-..+..+-.++..+...|+| ++||++.+++.
T Consensus 10 spLn~AH~~~RrAe~ll~~gky-deAIech~kAa 42 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKY-EEAISCHRKAT 42 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCH-HHHHHHHHHHH
Confidence 3445677777888999999998 99999887764
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=51.64 E-value=26 Score=30.93 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=28.9
Q ss_pred chhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc-CCCc
Q 020060 61 TQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL-NPSL 98 (331)
Q Consensus 61 ~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~-~p~~ 98 (331)
.+.+.++|.+|..+...++| .+|.+++..|+.. .|..
T Consensus 217 ~q~v~Y~YYlGr~~~~~~~y-~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 217 DQQIEYRYLLGRYYLLNSQV-HNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHCC
T ss_pred cceEeeeHHHHHHHHHHccH-HHHHHHHHHHHHhcCCcc
Confidence 46677788888888888887 8888888888887 6643
No 283
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.40 E-value=36 Score=22.58 Aligned_cols=31 Identities=6% Similarity=-0.003 Sum_probs=27.5
Q ss_pred hhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 223 FNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 223 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
..+|..+...|+++.|+.+|-+|+.+.|.-.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4588999999999999999999999988855
No 284
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.37 E-value=1.8e+02 Score=28.36 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHhcCCCCCC-CCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCC---C---c----HHHHHHHHHHHHHh
Q 020060 44 LALRLLGSVPPEQ-RKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNP---S---L----ADAWLCLGSCIWKK 112 (331)
Q Consensus 44 ~a~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p---~---~----~~~~~~lg~~~~~~ 112 (331)
+++..+....... ...+..+..+++.+|.++...++ +++.++...+..+. . . ..+-..||.++...
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~---~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR---DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH---HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH---HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 4556665554311 12334566777777777665543 47777777765432 0 1 13556777777766
Q ss_pred CChhHHHHHHHHHHhcC
Q 020060 113 GDLPAAKNCFNLALSKG 129 (331)
Q Consensus 113 g~~~~A~~~~~~al~~~ 129 (331)
++ +++...+...+.-+
T Consensus 469 ~~-eev~e~L~~~L~dd 484 (963)
T 4ady_A 469 AN-IEVYEALKEVLYND 484 (963)
T ss_dssp CC-HHHHHHHHHHHHTC
T ss_pred CC-HHHHHHHHHHHhcC
Confidence 64 45666666666533
No 285
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=50.80 E-value=73 Score=23.56 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCCc
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSLN 253 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 253 (331)
++...|............+..|...|..+...|++.+|...|..+++......
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35667777766444466777799999999999999999999999999775543
No 286
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.00 E-value=52 Score=21.61 Aligned_cols=17 Identities=12% Similarity=0.079 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHhch
Q 020060 197 SKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~ 213 (331)
.-.+.|+....+|+..+
T Consensus 10 ~~l~~Ai~lv~~Ave~D 26 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELD 26 (93)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678888888887643
No 287
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=49.67 E-value=57 Score=23.96 Aligned_cols=79 Identities=13% Similarity=0.066 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCChhHH
Q 020060 39 QNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKGDLPAA 118 (331)
Q Consensus 39 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 118 (331)
..++..++..|+..... ......-|.+|..|.....+.++..+.....+.+..+. .+.+=++|..+|++++|
T Consensus 21 ~~dYs~VI~~L~~~~~~-----~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkSde---~yL~YWIyiGRg~~~eA 92 (161)
T 2ynq_A 21 QNKYSDVITTLEDYAPE-----DMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKTDE---QYMLYWIYIGRSQSEEA 92 (161)
T ss_dssp TTCHHHHHHHHTTSCGG-----GSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTSCH---HHHHHHHHHHHTCHHHH
T ss_pred HhhHHHHHHHHhcCChh-----hCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccCCH---HHHHHHHHHcCCchHHH
Confidence 34557788888887632 33445677888888887776455666665555554432 23344567778999999
Q ss_pred HHHHHHH
Q 020060 119 KNCFNLA 125 (331)
Q Consensus 119 ~~~~~~a 125 (331)
+..-++.
T Consensus 93 lDiA~~L 99 (161)
T 2ynq_A 93 LELARTI 99 (161)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9887664
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=49.61 E-value=27 Score=23.21 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHhcCCCh
Q 020060 103 LCLGSCIWKKGDLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 103 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 132 (331)
..+|..+...|+++.|+.+|-+|+...|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 456777777888888888888887777664
No 289
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.41 E-value=31 Score=23.82 Aligned_cols=45 Identities=2% Similarity=0.025 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q 020060 197 SKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPS 251 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 251 (331)
..+++|..+..++|+.+ . .|.-...+.-|.+.+..+.+++.+..+
T Consensus 17 ~~h~~AF~~Is~AL~~D--E--------~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTD--E--------LGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHH--H--------HTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHhhhh--h--------cCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 56788889999998754 2 122233334455556666666776654
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.87 E-value=90 Score=24.41 Aligned_cols=52 Identities=6% Similarity=0.029 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhchhcCCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q 020060 201 QSLKAYQNAEKDERMKSNPDLYFNCATVNKYLENYERALSGFEASALKDPSL 252 (331)
Q Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 252 (331)
++...|.-..........+..|...|..+...|++.+|...|+.+++..-.-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4556677666644446677779999999999999999999999999976653
No 291
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=47.75 E-value=45 Score=22.01 Aligned_cols=56 Identities=11% Similarity=-0.096 Sum_probs=38.7
Q ss_pred HhhhhhhcccccHHHHHHHHHHHHhcCCCcH-H-----HHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 69 LKGKILDVVPEYRKDAEDHLSKAVKLNPSLA-D-----AWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 69 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-~-----~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
..|..++..|+| =+|.+.++......|+.. . +....|..+...|+. |...+.+++.
T Consensus 6 ~~~~~lfn~g~~-~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 6 EEVLGLWRAGRY-YEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHTTCH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHhCCCh-HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 345666777888 889999988888775431 1 223345556677887 8888888865
No 292
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=45.00 E-value=43 Score=29.89 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
+..+++.|...|.............+..++..+|++|+..++| ++|+.+.++++..
T Consensus 177 I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~-~~A~~~a~~vi~~ 232 (495)
T 3lew_A 177 SINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQW-EKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHhc
Confidence 4466677777664321111112345566777888888888888 8888888888865
No 293
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=44.24 E-value=39 Score=21.70 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=8.9
Q ss_pred HHhCChhHHHHHHHHHH
Q 020060 110 WKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al 126 (331)
-..|++++|+.+|..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44555555555555544
No 294
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.66 E-value=22 Score=22.62 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=23.0
Q ss_pred HhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 222 YFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 222 ~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
...+|.=|...|+|+.|+.+|+.+++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456788888899999999999999874
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.35 E-value=1.1e+02 Score=23.49 Aligned_cols=88 Identities=7% Similarity=0.033 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhCChhH
Q 020060 40 NESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK--LNPSLADAWLCLGSCIWKKGDLPA 117 (331)
Q Consensus 40 ~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~ 117 (331)
.-++.++..+..... -.+.+....+|...+..+. .+.. .++...|.-... +.-..+..|...|..+...|++.+
T Consensus 58 ~lLErc~~~F~~~~r--YkND~RYLklWl~Ya~~~~-~~~~-~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~ 133 (202)
T 3esl_A 58 STMERCLIYIQDMET--YRNDPRFLKIWIWYINLFL-SNNF-HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLE 133 (202)
T ss_dssp HHHHHHHHHHTTCGG--GTTCHHHHHHHHHHHHHHS-TTCH-HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhccccc--ccCCHHHHHHHHHHHHhhc-cccc-CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 667777777776541 1144555667777776542 2322 456666666555 456778899999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 020060 118 AKNCFNLALSKGPN 131 (331)
Q Consensus 118 A~~~~~~al~~~~~ 131 (331)
|...|+.+++..-.
T Consensus 134 A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 134 AKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHcCCc
Confidence 99999999987643
No 296
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.51 E-value=48 Score=21.23 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=8.0
Q ss_pred HHhCChhHHHHHHHHHH
Q 020060 110 WKKGDLPAAKNCFNLAL 126 (331)
Q Consensus 110 ~~~g~~~~A~~~~~~al 126 (331)
-..|+|++|+.+|..++
T Consensus 22 D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 34455555554444443
No 297
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=40.41 E-value=62 Score=27.47 Aligned_cols=48 Identities=10% Similarity=0.058 Sum_probs=34.1
Q ss_pred HHHHHHHHHhch-hc--CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhcC
Q 020060 202 SLKAYQNAEKDE-RM--KSNPDLYFNCATVNKYLENYERALSGFEASALKD 249 (331)
Q Consensus 202 A~~~~~~al~~~-~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 249 (331)
++..|.+++... .. ..+.--|..+|-.+++.+++.+|+.++..+-..-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi 326 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVA 326 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHH
Confidence 566677766521 11 2233447889999999999999999998887643
No 298
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=40.36 E-value=2.7e+02 Score=27.20 Aligned_cols=62 Identities=15% Similarity=0.145 Sum_probs=41.8
Q ss_pred hHHHHHhhhhhhcccccHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHhCChhHHHHHHHHHHh
Q 020060 64 ATYEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSLA--DAWLCLGSCIWKKGDLPAAKNCFNLALS 127 (331)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~ 127 (331)
..+...+|.++.-.++ +++.+.+...+.-+.... .+-..+|.++...|+-+.....+..+.+
T Consensus 455 ~gAaLGLGla~~GS~~--eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e 518 (963)
T 4ady_A 455 HGASLGIGLAAMGSAN--IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQE 518 (963)
T ss_dssp HHHHHHHHHHSTTCCC--HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC--HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhc
Confidence 3456678888887776 568888888877543222 3556778888888877666666665554
No 299
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=40.22 E-value=46 Score=24.46 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=43.7
Q ss_pred HHHHHHhCChhHHHHHHHHHHhcCCCh---HHHhhHHHHHHHhccCchhHHHHHHHHHHHHHHHh--cCCCCCchhHHHH
Q 020060 106 GSCIWKKGDLPAAKNCFNLALSKGPNK---KILCQLSMLERSMAQGSENQAEIVEESIQHAKEAI--TLDVKDGNSWYNL 180 (331)
Q Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l 180 (331)
+...+-..+|.+.+..++. .+|.. ...+.+|..+....... ++..+.....+ +.+|.....|..+
T Consensus 15 a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls-------~eQKenIln~itlkSde~yL~YWIyi 84 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLT-------EEQRQTVSNNITLKTDEQYMLYWIYI 84 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSC-------HHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCC-------HHHHHHHHhhCCccCCHHHHHHHHHH
Confidence 4445566677777666654 34444 56666777776554322 12222222222 2344445556666
Q ss_pred HHHHHhhhhhcCCCChhhHHHHHHHHHHH
Q 020060 181 GNACLTSFFVTGSWDHSKLLQSLKAYQNA 209 (331)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 209 (331)
|. |++++|+..-.+.
T Consensus 85 GR--------------g~~~eAlDiA~~L 99 (161)
T 2ynq_A 85 GR--------------SQSEEALELARTI 99 (161)
T ss_dssp HH--------------TCHHHHHHHHHHH
T ss_pred cC--------------CchHHHHHHHHhc
Confidence 55 8888888766543
No 300
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=38.86 E-value=53 Score=28.83 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK 93 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 93 (331)
+..+++.|+..|..... .....+..++..++++|+..++| ++|+.+.++++.
T Consensus 167 I~~DL~~A~~~L~~~~~---~gr~tk~aa~allarvyL~~~~~-~~A~~~a~~vi~ 218 (454)
T 3myv_A 167 IIETLEEAVTLMSEEKN---NGRMNKYAARALLARIYLYHDDN-RKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHCCCSCC---TTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccc---CCeecHHHHHHHHHHHHHhcccH-HHHHHHHHHHHh
Confidence 45667777777654221 13345566777888888888888 888888888875
No 301
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.73 E-value=33 Score=30.29 Aligned_cols=61 Identities=11% Similarity=-0.027 Sum_probs=45.2
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcC--------C--CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc-CCC
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLN--------P--SLADAWLCLGSCIWKKGDLPAAKNCFNLALSK-GPN 131 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~--------p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~ 131 (331)
+-++|+..++. .-+...++..-... | .....++.+|.++...++|.+|..++..|+.. .|.
T Consensus 182 L~kiYFkl~~~-~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 182 LNNIYFRIESP-QLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHSSCC-TTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCH-HHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 33678888886 77777665432222 1 12457789999999999999999999999988 553
No 302
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=37.27 E-value=1.6e+02 Score=23.63 Aligned_cols=179 Identities=15% Similarity=0.065 Sum_probs=84.8
Q ss_pred HHHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-hCChhHHHHHHHHHHhc--CCChHHHhhHHHH
Q 020060 66 YEYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWK-KGDLPAAKNCFNLALSK--GPNKKILCQLSML 141 (331)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~--~~~~~~~~~l~~~ 141 (331)
-+..++++....++| ++...+++++...++.. .+=...+..+|-. .|....+.+.+...-+. ...+.....+..-
T Consensus 33 ~lv~~AKLaeqaeRY-ddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i~~ 111 (261)
T 3ubw_A 33 DLVYQAKLAEQAERY-DEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIRE 111 (261)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHHHH
Confidence 344567788888998 99999999999887754 3344445555432 24344444444333222 1111111222222
Q ss_pred HHHhccCchhHHHHHHHHHHHHHHHhcCCCCCch----hHHHHHHHHHhhhhhcCCCCh-hhHHHHHHHHHHHHhc---h
Q 020060 142 ERSMAQGSENQAEIVEESIQHAKEAITLDVKDGN----SWYNLGNACLTSFFVTGSWDH-SKLLQSLKAYQNAEKD---E 213 (331)
Q Consensus 142 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~---~ 213 (331)
+...=. ..-..--.+.+..+...+--...+++ .+-..|..|..+.....+... .-.+.|...|+.|... .
T Consensus 112 yr~kIe--~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 112 YRQMVE--TELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 221100 00000111222222222111111221 122456655544222110000 1235677888887652 2
Q ss_pred hcCCChhH---HhhHHHHHHH-hhcHHHHHHHHHHHHh
Q 020060 214 RMKSNPDL---YFNCATVNKY-LENYERALSGFEASAL 247 (331)
Q Consensus 214 ~~~~~~~~---~~~la~~~~~-~g~~~~A~~~~~~al~ 247 (331)
..|.+|.- ..|.+..|+. ++++++|...-++|+.
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44677633 4666666664 6889988877666653
No 303
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=35.51 E-value=28 Score=22.72 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHhch
Q 020060 197 SKLLQSLKAYQNAEKDE 213 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~~ 213 (331)
..+++|..+..+++..+
T Consensus 11 ~~h~~AF~~Is~aL~~D 27 (89)
T 3eab_A 11 VFHKQAFEYISIALRID 27 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 57788999999988754
No 304
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=35.42 E-value=63 Score=28.45 Aligned_cols=52 Identities=19% Similarity=0.143 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK 93 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 93 (331)
+..+++.|...|..... .....+..++..+|++|+..|+| ++|+.+.++++.
T Consensus 173 I~~DL~~A~~~L~~~~~---~gr~tk~aa~allArvyL~~~~~-~~A~~~a~~vi~ 224 (461)
T 3kez_A 173 IISDLKNSTELLSGDFN---KGKVNRWAAMTLLSRVYLYKGEY-NEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHSCCSCC---TTSCCHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccC---CCeeeHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHh
Confidence 45677777777653221 13345566777888888888888 888888888875
No 305
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=35.06 E-value=75 Score=28.45 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
+..+++.|+..|.............+..++..++++++..++| ++|+.+.++++..
T Consensus 156 I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~-~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 156 ILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRY-EDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh
Confidence 5577777877776421111123345666788899999999998 9999999999864
No 306
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=34.77 E-value=1.5e+02 Score=23.84 Aligned_cols=90 Identities=22% Similarity=0.166 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhccccc---------HHHHHHHHHHHHh-----c--CCCcHHH
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEY---------RKDAEDHLSKAVK-----L--NPSLADA 101 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------~~~A~~~~~~al~-----~--~p~~~~~ 101 (331)
+......++.+++...-.....+ ....++-..|..|.-.-.+ .+.|...|++|.. + .|.+|--
T Consensus 117 L~~iC~diL~llD~~Lip~a~~~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiR 195 (268)
T 3efz_A 117 ILLESEDVIRIIDDNLLMYSEEG-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLY 195 (268)
T ss_dssp HHHHHHHHHHHHHHHTGGGCCHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCch-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 44555667777776431100122 4444455567666532211 2456777777764 3 5666521
Q ss_pred ---HHHHHHHHH-HhCChhHHHHHHHHHHhc
Q 020060 102 ---WLCLGSCIW-KKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 102 ---~~~lg~~~~-~~g~~~~A~~~~~~al~~ 128 (331)
..+.+..|+ -.++.++|...-++++.-
T Consensus 196 LGLaLNfSVFyYEIln~p~~Ac~lAk~AFde 226 (268)
T 3efz_A 196 LATILNYTILKYDLLGNPEGAMKFANRAIQA 226 (268)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 122233333 468888888888887654
No 307
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.79 E-value=1.8e+02 Score=22.76 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=59.9
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHhC
Q 020060 36 SKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV--KLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 36 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g 113 (331)
+.+..-++.++..+..... -.+.+....+|...+.. ..+ +...|.-.. .+.-..+..|...|..+...|
T Consensus 94 s~L~~lLErc~~~F~~~~r--YknD~RyLklWl~Ya~~---~~~----p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g 164 (223)
T 4aez_C 94 SGLVTLLERCTREFVRNPL--YKDDVRYLRIWMQYVNY---IDE----PVELFSFLAHHHIGQESSIFYEEYANYFESRG 164 (223)
T ss_dssp TCHHHHHHHHHHHTTTCGG--GTTCHHHHHHHHHHHTT---CSC----HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhccccc--ccCCHHHHHHHHHHHHc---cCC----HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcC
Confidence 3456778888888877541 11334555566666553 122 444554444 455677889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCC
Q 020060 114 DLPAAKNCFNLALSKGPN 131 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~ 131 (331)
++.+|...|+.+++..-.
T Consensus 165 ~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 165 LFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHcCCc
Confidence 999999999999987644
No 308
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.45 E-value=66 Score=24.65 Aligned_cols=25 Identities=16% Similarity=0.123 Sum_probs=10.3
Q ss_pred hhhcccccHHHHHHHHHHHHhcCCCc
Q 020060 73 ILDVVPEYRKDAEDHLSKAVKLNPSL 98 (331)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (331)
++...|.| ++|.+.+++...-++.+
T Consensus 126 VCiekg~F-k~A~eiLkr~f~~~~~~ 150 (211)
T 3bqo_A 126 VCMENGNF-KEAEEVFERIFGDPNSH 150 (211)
T ss_dssp HHHHTTCH-HHHHHHHHHHC-----C
T ss_pred HHHHccch-HHHHHHHHHHhcCCCCc
Confidence 34445554 55555555555444433
No 309
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=31.92 E-value=62 Score=30.12 Aligned_cols=50 Identities=10% Similarity=0.028 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh-HHHhhHHHHHHHhcc
Q 020060 98 LADAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK-KILCQLSMLERSMAQ 147 (331)
Q Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~l~~~~~~~g~ 147 (331)
-.+.....|...+..|+|.-|.+....++..+|++ .+...++.++.++|.
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 35667778888899999999999999999999999 888889999998875
No 310
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.67 E-value=77 Score=20.76 Aligned_cols=12 Identities=33% Similarity=0.329 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHh
Q 020060 82 KDAEDHLSKAVK 93 (331)
Q Consensus 82 ~~A~~~~~~al~ 93 (331)
+.|+.++.+|++
T Consensus 13 ~~Ai~lv~~Ave 24 (93)
T 1wfd_A 13 TAAVAVLKRAVE 24 (93)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555433
No 311
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=31.26 E-value=60 Score=28.72 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
+..+++.|+..|.... ......+..++..+|++|+..++| ++|+.+.++++..
T Consensus 179 I~~DL~~A~~~L~~~~---~~gr~tk~aa~allarvyL~~~~~-~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 179 VVSDMSNALSGLRQET---SNGYINYWAAQALLSRVYLNMGEY-QKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHGGGSCSSC---CTTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccc---cCCcCcHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhC
Confidence 3455555655554311 113345566777888888888888 8888888888764
No 312
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=30.64 E-value=1.1e+02 Score=26.65 Aligned_cols=48 Identities=17% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhchh-c--CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 201 QSLKAYQNAEKDER-M--KSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 201 ~A~~~~~~al~~~~-~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
.++..|++++.... . ..+.-.|..+|-.+++.++|.+|+.++..+-..
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~V 332 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 332 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhhh
Confidence 35566777665211 1 223344788899999999999999999988764
No 313
>3msv_A Nuclear import adaptor, NRO1; helix repeats, heat repeats, protein binding; 2.18A {Schizosaccharomyces pombe}
Probab=30.18 E-value=2.3e+02 Score=23.28 Aligned_cols=132 Identities=13% Similarity=0.079 Sum_probs=75.4
Q ss_pred HHHHHHHHhhhhc---cCCCCc-cchhhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhh-----hh----hc----
Q 020060 14 KAADDLYHVKETF---FPANPD-DKVSKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGK-----IL----DV---- 76 (331)
Q Consensus 14 ~~~~~l~~~~~~~---~~~~~~-~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~-----~~----~~---- 76 (331)
.-+.+|..+.+.| |..... +...-+.+-+-++-++|+...... .-+......|.++. .. +.
T Consensus 64 DEisQLkgLwktyrekl~Sdri~dnElLLNGIIHECDRLLRn~e~~~--~Lp~~FhAIYAlALl~lSELa~~a~Fk~ede 141 (393)
T 3msv_A 64 DNISQLWGLYEMSREKLENDDIDASVSLVFGTIHEADRILRNTEDIS--TLPKDFHAAYSSALLAVSELFEIAQKRLKET 141 (393)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCSCGG--GSCHHHHHHHHHHHHHHHHTHHHHGGGSCSS
T ss_pred chHHHHHHHHHHHHHhhcccccccchHHhcchHHHHHHHHHhccCCC--CCCHHHHHHHHHHHHHHHHHhHHHhccCchh
Confidence 4566677777777 664431 223345566666777776543110 11222222222222 11 11
Q ss_pred --ccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----------C--------------ChhHHHHHHHHHHhcCC
Q 020060 77 --VPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----------G--------------DLPAAKNCFNLALSKGP 130 (331)
Q Consensus 77 --~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g--------------~~~~A~~~~~~al~~~~ 130 (331)
.++|.+.|++-.+-.++..|++......++.++++. + ..++|..+|+..-+..|
T Consensus 142 ~~V~efFDaALERielGLe~~p~s~~L~la~sKIllqrI~~v~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~ 221 (393)
T 3msv_A 142 NTEESYIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDST 221 (393)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred hhHHHHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHhhCh
Confidence 234447788888888889999988887777766542 2 24678888886655544
Q ss_pred Ch---------HHHhhHHHHHHHhcc
Q 020060 131 NK---------KILCQLSMLERSMAQ 147 (331)
Q Consensus 131 ~~---------~~~~~l~~~~~~~g~ 147 (331)
.. ..++.++..+.+.|.
T Consensus 222 e~~t~~tld~~rpl~~lS~yl~~~~~ 247 (393)
T 3msv_A 222 EYFDALTPDSLRPLYILSSYLFQFGD 247 (393)
T ss_dssp CCCTTCCTGGGTTHHHHHHHHHHTGG
T ss_pred hhccccccchhhHHHHHHHHHHHhcc
Confidence 43 345667777776653
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=29.49 E-value=1.5e+02 Score=25.77 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=30.6
Q ss_pred HHHHHHHHHhch-hc--CCChhHHhhHHHHHHHhhcHHHHHHHHHHHHhc
Q 020060 202 SLKAYQNAEKDE-RM--KSNPDLYFNCATVNKYLENYERALSGFEASALK 248 (331)
Q Consensus 202 A~~~~~~al~~~-~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 248 (331)
++..|.+++... .. ..+.--|..+|-.+++.+++.+|+.++..+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 455555555311 11 223344788888999999999999988887654
No 315
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=29.48 E-value=81 Score=21.75 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=8.3
Q ss_pred HhCChhHHHHHHHHHH
Q 020060 111 KKGDLPAAKNCFNLAL 126 (331)
Q Consensus 111 ~~g~~~~A~~~~~~al 126 (331)
..|+|++|+.+|..++
T Consensus 30 ~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 4455555555555544
No 316
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.77 E-value=1.7e+02 Score=21.27 Aligned_cols=87 Identities=7% Similarity=0.056 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHhCC
Q 020060 37 KLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK--LNPSLADAWLCLGSCIWKKGD 114 (331)
Q Consensus 37 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~ 114 (331)
.+..-++.++..+..... -.+.+.-..+|...+... +++...|.-... +.-..+..|...|..+...|+
T Consensus 46 ~l~~lLErc~~~f~~~~~--YknD~RyLklWl~ya~~~-------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~ 116 (152)
T 4a1g_A 46 YLITLLEHLMKEFLDKKK--YHNDPRFISYCLKFAEYN-------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGE 116 (152)
T ss_dssp HHHHHHHHHHHHHTTCGG--GTTCHHHHHHHHHHHTTB-------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhccccc--ccCCHHHHHHHHHHHHhc-------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC
Confidence 366777888887766541 113344455565555432 225566665554 455678889999999999999
Q ss_pred hhHHHHHHHHHHhcCCCh
Q 020060 115 LPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 115 ~~~A~~~~~~al~~~~~~ 132 (331)
+.+|...|+.+++.....
T Consensus 117 ~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 117 LQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHHcCCcc
Confidence 999999999999876443
No 317
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=28.76 E-value=1.1e+02 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=35.7
Q ss_pred HHHHHHHHHhc-----CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 84 AEDHLSKAVKL-----NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 84 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
++.+|.+++.. ...+...|..+|-++++.+++.+|+.++-.+-..
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 77788887764 2345667788999999999999999999888644
No 318
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=28.08 E-value=1.5e+02 Score=20.41 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHhc
Q 020060 198 KLLQSLKAYQNAEKD 212 (331)
Q Consensus 198 ~~~~A~~~~~~al~~ 212 (331)
..+.|+....+|+..
T Consensus 14 ~l~kAi~lv~~Ave~ 28 (117)
T 2cpt_A 14 NLQKAIDLASKAAQE 28 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777777777753
No 319
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=27.41 E-value=1.2e+02 Score=26.60 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCCCCCC--CCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 38 LQNESDLALRLLGSVPPEQ--RKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
+..++++|+..|....... ......+..++..+|++|+..++| ++|..+.++++..
T Consensus 163 I~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~-~~A~~~a~~vi~~ 220 (460)
T 3snx_A 163 IFDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQW-GEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHhc
Confidence 4466777777774322110 012234556677778888888887 8888888888764
No 320
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=27.33 E-value=2.3e+02 Score=22.48 Aligned_cols=178 Identities=12% Similarity=0.045 Sum_probs=84.7
Q ss_pred HHHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-hCChhHHHHHHHHHHhcCC--ChHHHhhHHHHH
Q 020060 67 EYLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWK-KGDLPAAKNCFNLALSKGP--NKKILCQLSMLE 142 (331)
Q Consensus 67 ~~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~--~~~~~~~l~~~~ 142 (331)
+..++++....++| ++...+++++...++.. .+=...+..+|-. .|....+.+.+...-+... .+.....+..-|
T Consensus 7 lv~~AklaeqaeRy-ddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i~~y 85 (248)
T 3uzd_A 7 LVQKARLAEQAERY-DDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAY 85 (248)
T ss_dssp HHHHHHHHHHTTCH-HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHHHHH
T ss_pred HHHHHHHHHHhcCH-HHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 34567788888998 99999999999887754 3344445555432 2444445554433322211 111111111111
Q ss_pred HHhccCchhHHHHHHHHHHHHHHHhcCCCCCc-----h-hHHHHHHHHHhhhhhcCCCC-hhhHHHHHHHHHHHHhc---
Q 020060 143 RSMAQGSENQAEIVEESIQHAKEAITLDVKDG-----N-SWYNLGNACLTSFFVTGSWD-HSKLLQSLKAYQNAEKD--- 212 (331)
Q Consensus 143 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~-~~~~l~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~--- 212 (331)
...=. ..-..--.+.+..+...+--...++ . .+-..|..|..+.-...+.. ..-.+.|...|+.|...
T Consensus 86 r~kie--~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~ 163 (248)
T 3uzd_A 86 REKIE--KELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKE 163 (248)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 11000 0000011223333333221111122 1 23345666554422221000 01235677788877652
Q ss_pred hhcCCChhH---HhhHHHHHHH-hhcHHHHHHHHHHHHh
Q 020060 213 ERMKSNPDL---YFNCATVNKY-LENYERALSGFEASAL 247 (331)
Q Consensus 213 ~~~~~~~~~---~~~la~~~~~-~g~~~~A~~~~~~al~ 247 (331)
...|.+|.- ..|.+..|+. ++++++|...-++++.
T Consensus 164 ~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 164 HMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 244677633 4666666664 7889988877666654
No 321
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.01 E-value=1.3e+02 Score=26.62 Aligned_cols=56 Identities=14% Similarity=-0.018 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhcCCCCCCCC------------CcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHhc
Q 020060 38 LQNESDLALRLLGSVPPEQRK------------SPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVKL 94 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~~ 94 (331)
+..+++.|...|......... ....+..++..+|++|+..++| ++|+.+.++++..
T Consensus 159 I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~~r~tk~aA~allarvyL~~~~~-~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 159 AKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQGKLFNKLSAYSVLAHICAWQGNY-AEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTTTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccCCccccccccccccccccccHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhC
Confidence 557778888877643211100 1334566778889999999998 9999999998864
No 322
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=26.16 E-value=1.5e+02 Score=25.91 Aligned_cols=47 Identities=17% Similarity=0.025 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 82 KDAEDHLSKAVKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+..+..++.|+..-|. ...++..+|.+|+..|+|++|+.+.++++..
T Consensus 165 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 165 DFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp HHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 3455666666665442 3567888999999999999999999999853
No 323
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=25.81 E-value=1.3e+02 Score=19.07 Aligned_cols=16 Identities=19% Similarity=0.069 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHhc
Q 020060 197 SKLLQSLKAYQNAEKD 212 (331)
Q Consensus 197 ~~~~~A~~~~~~al~~ 212 (331)
...++|+....+++..
T Consensus 8 ~~l~~A~~l~~~Av~~ 23 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDL 23 (85)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777777777653
No 324
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=25.63 E-value=2.5e+02 Score=22.13 Aligned_cols=177 Identities=15% Similarity=0.065 Sum_probs=81.3
Q ss_pred HHhhhhhhcccccHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHH-hCChhHHHHHHHHHHhcCC--ChHHHhhHHHHHH
Q 020060 68 YLKGKILDVVPEYRKDAEDHLSKAVKLNPSL-ADAWLCLGSCIWK-KGDLPAAKNCFNLALSKGP--NKKILCQLSMLER 143 (331)
Q Consensus 68 ~~~g~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~--~~~~~~~l~~~~~ 143 (331)
..++.+....++| ++...++++++..++.. .+=...+..+|-. .|....+.+.+...-+... .+.....+..-+.
T Consensus 9 v~~AklaeqaeRy-ddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i~~yr 87 (234)
T 2br9_A 9 VYQAKLAEQAERY-DEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMIREYR 87 (234)
T ss_dssp HHHHHHHHHHTCH-HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3567777778998 99999999999887653 3334444444432 2333334444332211110 1111111111111
Q ss_pred HhccCchhHHHHHHHHHHHHHHHhcCCCCCc---h-hHHHHHHHHHhhhhhcCCCCh-hhHHHHHHHHHHHHhc---hhc
Q 020060 144 SMAQGSENQAEIVEESIQHAKEAITLDVKDG---N-SWYNLGNACLTSFFVTGSWDH-SKLLQSLKAYQNAEKD---ERM 215 (331)
Q Consensus 144 ~~g~~~~~~~~~~~~A~~~~~~al~~~p~~~---~-~~~~l~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~---~~~ 215 (331)
..= ...-..--.+.+..+.+.+--...++ . .+-..|..|........+... .-.+.|...|+.|... ...
T Consensus 88 ~ki--e~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~ 165 (234)
T 2br9_A 88 QMV--ETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELP 165 (234)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHH--HHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 100 00000011122222222221111111 1 223345555544222210000 1235677788887752 234
Q ss_pred CCChhH---HhhHHHHHHH-hhcHHHHHHHHHHHHh
Q 020060 216 KSNPDL---YFNCATVNKY-LENYERALSGFEASAL 247 (331)
Q Consensus 216 ~~~~~~---~~~la~~~~~-~g~~~~A~~~~~~al~ 247 (331)
|.+|.- ..|.+..|+. +|++++|...-++++.
T Consensus 166 pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 166 PTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677633 4666666664 7899998887776664
No 325
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=24.93 E-value=1.5e+02 Score=27.61 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=26.2
Q ss_pred hhhhhhcccccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhC
Q 020060 70 KGKILDVVPEYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 70 ~g~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 113 (331)
.|...+..|+| .-|.+....++..+|++..+...++.+|.++|
T Consensus 455 ~a~~~~~~g~~-~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 455 QARASYARGEY-RWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 34445555665 66666666666666666666666666655544
No 326
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=24.36 E-value=1.7e+02 Score=25.70 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 82 KDAEDHLSKAVKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+.-+..++.|+..-|. ...++..+|.+|+..|+|++|+.+.++++..
T Consensus 171 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 171 TEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp HHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 3455556666654432 3568888999999999999999999999863
No 327
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=24.35 E-value=1.5e+02 Score=25.81 Aligned_cols=46 Identities=9% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 83 DAEDHLSKAVKL-----NPSLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 83 ~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
.++.+|.+++.. ...+...|..+|-+|++.+++.+|+.++-.+-..
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 367777777764 2334567788899999999999999999887544
No 328
>3qtm_A Uncharacterized protein C4B3.07; tetratricopeptide repeat, enhancer of translation terminatio translation; HET: CME; 2.15A {Schizosaccharomyces pombe} PDB: 3qtn_B
Probab=23.85 E-value=2.9e+02 Score=22.36 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=47.1
Q ss_pred ccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh----------CC--------------hhHHHHHHHHHHhcCCCh--
Q 020060 79 EYRKDAEDHLSKAVKLNPSLADAWLCLGSCIWKK----------GD--------------LPAAKNCFNLALSKGPNK-- 132 (331)
Q Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----------g~--------------~~~A~~~~~~al~~~~~~-- 132 (331)
+|.+.|++-.+-.++..|++......++.+.++. +. .++|.++|+..-+..|..
T Consensus 99 eFFDaALERielGLe~~p~s~~L~la~SKILlqrI~~~~~~~s~eE~~~~~p~~~ta~kmi~qa~~~l~~Laqk~~e~~t 178 (346)
T 3qtm_A 99 SYIDAAIERAQLGLDAPGNESRLFLALARAYLEKVRVLVWRHDNEESLANIPVTQLVNPYIEKAIQYLRPLAQDSTEYFD 178 (346)
T ss_dssp HHHHHHHHHHHHGGGSSSCCHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHHHHHHHHHHHSTTSCCCT
T ss_pred HHHHHHHHHHHhhhhhCCCChhHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHhhChhhcc
Confidence 4447788888888889999988887777766543 22 467888888665554433
Q ss_pred -------HHHhhHHHHHHHhcc
Q 020060 133 -------KILCQLSMLERSMAQ 147 (331)
Q Consensus 133 -------~~~~~l~~~~~~~g~ 147 (331)
..++.++..+.+.|.
T Consensus 179 ~~tld~~rpl~~lS~yl~~~~~ 200 (346)
T 3qtm_A 179 ALTPDSLRPLYILSSYLFQFGD 200 (346)
T ss_dssp TCCTTTTTTHHHHHHHHHHTGG
T ss_pred ccccchhhHHHHHHHHHHHhcc
Confidence 455667777776654
No 329
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=23.41 E-value=1.8e+02 Score=25.50 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 82 KDAEDHLSKAVKLNPS--------LADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 82 ~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
+.-+..++.|+..-|. ...++..+|.+|+..|+|++|+.+.++++..
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 4456666777765443 3468888999999999999999999999864
No 330
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.95 E-value=2.3e+02 Score=20.85 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=61.0
Q ss_pred hhhHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHhC
Q 020060 36 SKLQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAV--KLNPSLADAWLCLGSCIWKKG 113 (331)
Q Consensus 36 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g 113 (331)
+.+..-++.++..+..... -.+.+....+|...+... ++ +...|.-.. .+.-..+..|...|..+...|
T Consensus 40 s~L~~lLErc~~~f~~~~~--YknD~RyLklWl~ya~~~---~~----p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~ 110 (164)
T 2wvi_A 40 SNMSTLLERAVEALQGEKR--YYSDPRFLNLWLKLGRLC---NE----PLDMYSYLHNQGIGVSLAQFYISWAEEYEARE 110 (164)
T ss_dssp CCHHHHHHHHHHHTTTCGG--GTTCHHHHHHHHHHHHHC---SC----HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhhhhhh--hccCHHHHHHHHHHHHhc---CC----HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcC
Confidence 3456678888888776541 113445566666666543 33 344455444 455677889999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCh
Q 020060 114 DLPAAKNCFNLALSKGPNK 132 (331)
Q Consensus 114 ~~~~A~~~~~~al~~~~~~ 132 (331)
++.+|...|+.+++.....
T Consensus 111 ~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 111 NFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp CHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHHHHcCCCc
Confidence 9999999999999877443
No 331
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=22.32 E-value=1.9e+02 Score=25.67 Aligned_cols=46 Identities=20% Similarity=0.138 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCC-----------CcHHHHHHHHHHHHHhCChhHHHHHHHHHHhc
Q 020060 83 DAEDHLSKAVKLNP-----------SLADAWLCLGSCIWKKGDLPAAKNCFNLALSK 128 (331)
Q Consensus 83 ~A~~~~~~al~~~p-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (331)
.-+..++.|+..-| +...++..+|.+|+..++|++|+.+.++++..
T Consensus 176 ~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 176 QSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34555556655433 22458888999999999999999999999864
No 332
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=22.23 E-value=3e+02 Score=21.89 Aligned_cols=46 Identities=4% Similarity=-0.098 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHhcCCCh--HHHhhHHHHHHHh
Q 020060 100 DAWLCLGSCIWKKGDLPAAKNCFNLALSKGPNK--KILCQLSMLERSM 145 (331)
Q Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~l~~~~~~~ 145 (331)
+-+..+|.+..+.++|++.+.+.+++.+.++.- .-...++.+|.+.
T Consensus 5 e~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNv 52 (248)
T 3uzd_A 5 EQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNV 52 (248)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhh
Confidence 345677888999999999999999999988755 4455566666543
No 333
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.85 E-value=2.9e+02 Score=21.54 Aligned_cols=52 Identities=10% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHHHHHHHHHhhh
Q 020060 225 CATVNKYLENYERALSGFEASALKDPSLNAT-EEVQMMVNLLDKIENLLKGHA 276 (331)
Q Consensus 225 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~l~~~~~~l~~~~~a~~~~~ 276 (331)
.-.++.+.|.|++|...+++.+..++++... ..+..+......+..-+..|.
T Consensus 120 AV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqnFS 172 (235)
T 3bu8_A 120 AVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQNFS 172 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHTCC
T ss_pred HHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHhcc
Confidence 3445678999999999999999877666655 777777666665555554443
No 334
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=20.04 E-value=1.1e+02 Score=27.07 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCcchhhHHHHHhhhhhhcccccHHHHHHHHHHHHh
Q 020060 38 LQNESDLALRLLGSVPPEQRKSPTQRATYEYLKGKILDVVPEYRKDAEDHLSKAVK 93 (331)
Q Consensus 38 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 93 (331)
+..+++.|...|..... .....+..++..+|++|+..++| ++|+.+.++++.
T Consensus 157 I~~DL~~A~~~Lp~~~~---~gr~tk~aA~allarvyL~~~~~-~~A~~~a~~vi~ 208 (481)
T 3jq1_A 157 AKEDLKTAASLLPITNK---IGKPTQGAAYAALGKIYVYEENW-QEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHSCSSCS---TTSCCHHHHHHHHHHHHHHTTCH-HHHHHHHGGGGS
T ss_pred HHHHHHHHHHhCCCCCC---CCcccHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHh
Confidence 45667777776654211 12334556777889999989998 889988888775
Done!