Query 020061
Match_columns 331
No_of_seqs 101 out of 1045
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:42:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020061.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020061hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 100.0 2.6E-59 5.7E-64 455.8 24.4 308 24-331 1-316 (510)
2 COG2233 UraA Xanthine/uracil p 100.0 8.6E-52 1.9E-56 407.0 24.1 268 23-331 4-291 (451)
3 PRK11412 putative uracil/xanth 100.0 2.3E-47 4.9E-52 378.7 27.3 262 35-331 8-286 (433)
4 TIGR03616 RutG pyrimidine util 100.0 1.1E-43 2.5E-48 353.1 29.3 268 22-331 17-291 (429)
5 PRK10720 uracil transporter; P 100.0 1.5E-43 3.2E-48 352.3 26.5 256 22-331 1-271 (428)
6 TIGR00801 ncs2 uracil-xanthine 100.0 1.2E-42 2.6E-47 344.8 26.6 260 31-331 1-280 (415)
7 PF00860 Xan_ur_permease: Perm 100.0 1.6E-43 3.5E-48 348.3 18.8 263 35-331 1-278 (389)
8 TIGR03173 pbuX xanthine permea 100.0 1.5E-40 3.2E-45 328.9 24.5 249 41-331 1-264 (406)
9 TIGR00843 benE benzoate transp 99.9 1.5E-22 3.1E-27 198.1 23.9 242 36-330 22-264 (395)
10 PF03594 BenE: Benzoate membra 99.9 8.5E-20 1.8E-24 176.3 23.5 235 36-319 6-241 (378)
11 COG3135 BenE Uncharacterized p 99.8 8.6E-19 1.9E-23 166.5 19.6 233 35-319 20-256 (402)
12 COG2252 Xanthine/uracil/vitami 99.8 4.8E-18 1E-22 167.3 20.0 260 20-330 4-292 (436)
13 COG0659 SUL1 Sulfate permease 98.7 3.2E-06 6.9E-11 87.4 22.1 230 34-315 21-279 (554)
14 PRK11660 putative transporter; 98.3 0.00014 3.1E-09 75.5 22.7 121 33-180 28-148 (568)
15 TIGR00815 sulP high affinity s 98.1 0.00099 2.1E-08 69.2 22.8 244 34-315 14-290 (563)
16 KOG0236 Sulfate/bicarbonate/ox 94.6 3.5 7.5E-05 44.0 19.3 211 76-315 111-358 (665)
17 TIGR00834 ae anion exchange pr 93.4 15 0.00033 40.5 23.3 218 72-306 401-677 (900)
18 PF00916 Sulfate_transp: Sulfa 91.5 0.28 6.1E-06 45.8 4.8 142 151-314 2-177 (280)
19 TIGR00843 benE benzoate transp 87.2 14 0.00031 36.9 13.3 167 34-237 221-394 (395)
20 PF11840 DUF3360: Protein of u 86.6 16 0.00034 36.4 12.8 170 40-240 67-248 (492)
21 KOG1172 Na+-independent Cl/HCO 85.0 65 0.0014 35.4 22.0 232 43-302 364-649 (876)
22 PF03594 BenE: Benzoate membra 79.1 72 0.0016 31.8 15.3 167 33-236 204-377 (378)
23 PLN00028 nitrate transmembrane 76.5 78 0.0017 31.8 14.3 40 60-99 63-106 (476)
24 TIGR03173 pbuX xanthine permea 57.7 1.4E+02 0.003 29.7 11.4 78 73-173 254-331 (406)
25 TIGR00815 sulP high affinity s 56.3 2.5E+02 0.0055 29.2 15.8 83 75-182 294-376 (563)
26 PRK11660 putative transporter; 54.1 2.8E+02 0.006 29.0 15.7 83 75-182 314-396 (568)
27 PF05977 MFS_3: Transmembrane 50.7 3.1E+02 0.0066 28.4 14.9 133 28-175 214-348 (524)
28 COG0659 SUL1 Sulfate permease 49.0 99 0.0021 32.4 9.1 27 156-182 339-365 (554)
29 COG3135 BenE Uncharacterized p 46.6 2E+02 0.0044 28.7 10.1 134 75-240 256-396 (402)
30 PF00860 Xan_ur_permease: Perm 40.0 1.8E+02 0.004 28.6 9.1 83 72-177 267-350 (389)
31 PRK11412 putative uracil/xanth 35.3 2.2E+02 0.0048 28.9 8.9 79 73-174 276-354 (433)
32 PF04172 LrgB: LrgB-like famil 34.5 1.3E+02 0.0029 27.5 6.6 78 155-238 11-94 (215)
33 PRK05122 major facilitator sup 34.4 1.3E+02 0.0029 28.7 7.0 70 28-100 11-87 (399)
34 COG1457 CodB Purine-cytosine p 32.1 5.7E+02 0.012 26.1 17.8 21 221-241 229-249 (442)
35 PRK03699 putative transporter; 31.9 2.6E+02 0.0057 26.8 8.7 37 55-91 228-264 (394)
36 PRK11663 regulatory protein Uh 31.9 5E+02 0.011 25.4 13.9 43 53-96 44-90 (434)
37 KOG1292 Xanthine/uracil transp 31.3 3.2E+02 0.007 28.3 9.2 177 71-273 304-499 (510)
38 PRK04288 antiholin-like protei 31.3 3.2E+02 0.0069 25.4 8.5 70 163-238 36-110 (232)
39 COG0701 Predicted permeases [G 31.0 3.8E+02 0.0082 26.1 9.4 101 132-239 26-148 (317)
40 COG1346 LrgB Putative effector 30.7 3.1E+02 0.0067 25.5 8.2 78 155-240 24-109 (230)
41 COG1289 Predicted membrane pro 30.2 3.1E+02 0.0068 29.2 9.5 78 160-239 421-499 (674)
42 COG3949 Uncharacterized membra 30.2 4.8E+02 0.01 25.7 9.8 88 139-230 41-150 (349)
43 TIGR00801 ncs2 uracil-xanthine 29.8 2.1E+02 0.0045 28.6 7.7 77 74-173 271-347 (415)
44 PF06166 DUF979: Protein of un 29.1 4.2E+02 0.0092 25.7 9.1 32 282-313 160-191 (308)
45 PRK09705 cynX putative cyanate 29.0 3.2E+02 0.007 26.3 8.8 59 31-91 205-263 (393)
46 PRK11273 glpT sn-glycerol-3-ph 28.1 4.7E+02 0.01 25.7 9.9 46 53-100 50-99 (452)
47 COG3817 Predicted membrane pro 28.1 5E+02 0.011 24.8 9.1 127 161-313 50-195 (313)
48 COG5438 Predicted multitransme 26.7 6.6E+02 0.014 25.2 12.7 32 281-312 252-284 (385)
49 PRK12585 putative monovalent c 26.5 3.1E+02 0.0068 24.8 7.3 45 135-179 7-57 (197)
50 PRK10739 putative antibiotic t 24.8 2.7E+02 0.0058 25.0 6.7 30 156-185 156-192 (197)
51 TIGR00883 2A0106 metabolite-pr 23.7 5.8E+02 0.013 23.5 9.9 37 54-90 241-277 (394)
52 PF07690 MFS_1: Major Facilita 23.3 3.3E+02 0.0071 24.8 7.4 40 51-90 225-265 (352)
53 TIGR00659 conserved hypothetic 23.2 5E+02 0.011 24.0 8.3 77 156-238 22-104 (226)
54 COG2807 CynX Cyanate permease 23.0 3.8E+02 0.0083 26.9 7.9 51 31-90 208-258 (395)
55 KOG2325 Predicted transporter/ 22.9 87 0.0019 32.3 3.5 84 28-111 27-119 (488)
56 PRK12586 putative monovalent c 22.3 4.2E+02 0.0091 22.8 7.1 48 133-180 8-61 (145)
57 TIGR00710 efflux_Bcr_CflA drug 22.1 2.1E+02 0.0046 26.7 5.9 57 30-87 205-261 (385)
58 PF07613 DUF1576: Protein of u 21.5 5.6E+02 0.012 22.9 7.9 32 155-186 53-84 (183)
59 PRK10711 hypothetical protein; 21.0 2.8E+02 0.0061 25.7 6.2 69 162-238 30-105 (231)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.6e-59 Score=455.84 Aligned_cols=308 Identities=57% Similarity=1.060 Sum_probs=290.8
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHH-HHHHHHHHHHHHHHHHHHHHhCCccceeeccc
Q 020061 24 ISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEK-AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGS 102 (331)
Q Consensus 24 ~~y~~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~-~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~s 102 (331)
+.|++||.|||++.+++|+||++.|+++++++|.+++++++.+++|. +++||+++|++||.|++|+++|.|||++||+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 46999999999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcccCCCCC---CChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhh
Q 020061 103 YTFVPSTISIILAGRFSNYSG---DPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGL 179 (331)
Q Consensus 103 f~~l~~~~ai~~~~~~~~~~~---~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl 179 (331)
|+|+++..++.+...+.|+.. .+++.|++.+|+++|++++++++++++|++|+++++.|++.|+++.|.++++|+++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~~~~~~~~~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l 160 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITTPHETDTERFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGL 160 (510)
T ss_pred eehhhHHHHHHhccccCCCCCcccchhHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhh
Confidence 999999999998777888642 23457999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchhhhhhHHHHHHHHHHHHHH--cccchh--ccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccc
Q 020061 180 YEFGFPGVAKCVEIGLPQLVIIVFISQY--LPHVIK--RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASC 255 (331)
Q Consensus 180 ~~~~~~~~~~~~~l~~~~l~~iv~~~~~--~~~~~~--~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~ 255 (331)
++.+++.++.||+++++.+++.+++++| +++... .++++++++++++++.+.|++|++++.+|++|+++.+++++|
T Consensus 161 ~~~~~~~~~~~weI~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 161 FQDGFPKLGKHWEISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred HHhhhhhhhhheeecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 9999999999999999999999999999 533221 235789999999999999999999999999999999999999
Q ss_pred ccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCcccccccC
Q 020061 256 RTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQVI 331 (331)
Q Consensus 256 ~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dGl 331 (331)
|+|.+..++++||+.+|+|+|||.|.||.+..+.++...++.++|++|+|.+++|.++.++++++.+|||+..||+
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGi 316 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAMMAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGI 316 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhH
Confidence 9999988899999999999999999999999999999999999999999999999999999999999999999985
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=100.00 E-value=8.6e-52 Score=407.04 Aligned_cols=268 Identities=27% Similarity=0.497 Sum_probs=246.7
Q ss_pred CcccccCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCcccee
Q 020061 23 SISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAV 98 (331)
Q Consensus 23 ~~~y~~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~ 98 (331)
+.....|||+|+.+.+++|+||+++||++++++|++++++.|++++|+++++|+++++||++|++|.+ .|.|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34445778889999999999999999999999999999999999999999999999999999999997 46699999
Q ss_pred eccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHH-hHhhhcCcchHHHHHHHHhh
Q 020061 99 MGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWR-NVTRFLSPLSVVPLISLVGF 177 (331)
Q Consensus 99 ~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~-~l~~~fpP~V~G~vv~lIGl 177 (331)
+|+||+|+++++++..+++ .++++++|+++++|+++++++. +++ |++|+|||+|+|+++++||+
T Consensus 84 lG~sFafi~p~i~~~~~~g-------------~~~~~~~G~ii~ag~~~~li~~--~~~~~l~rlfPPvVtG~Vi~~IGl 148 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG-------------DGIAALLGGIIAAGLVYFLISP--IVKIRLARLFPPVVTGPVVLVIGL 148 (451)
T ss_pred EechHHHHHHHHHHHhccC-------------CchHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCceEEeEeeeehh
Confidence 9999999999999876543 3589999999999999999997 477 99999999999999999999
Q ss_pred hhhhhhhccch--------------hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCC
Q 020061 178 GLYEFGFPGVA--------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGA 243 (331)
Q Consensus 178 sl~~~~~~~~~--------------~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~ 243 (331)
+|.++++++++ .++.+++.++++++++++|.| +++|++++++|+++||++|+++|.
T Consensus 149 sL~~vai~~~~G~~~~~~~~~~~~~~~l~la~~tl~~il~~~~f~~-------g~~~~i~ILiGlv~G~~la~~~G~--- 218 (451)
T COG2233 149 SLAPVAINMAGGGPGAAGNPDFGSLENLGLALVTLLIILLINRFGK-------GFLRRIPILIGLVVGYLLALFMGM--- 218 (451)
T ss_pred hhHHHHHHHhhCCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhCC---
Confidence 99999998764 257899999999999999995 579999999999999999999985
Q ss_pred CCCCCcccccccccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCC-cccc
Q 020061 244 YNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMP-PSVL 322 (331)
Q Consensus 244 ~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~-~~~i 322 (331)
+||+. +.++|||++|+|++||. +|||.++++++++++++++|++||+.+.+++++ |+.+ ++++
T Consensus 219 -------------vdf~~-v~~a~w~~~P~~~~fg~-~F~~~ail~m~~v~iV~~~E~~G~i~A~~~itg-~~~~~~~~l 282 (451)
T COG2233 219 -------------VDFSG-VAEAPWFALPTPFYFGM-AFDWGAILTMLPVAIVTIVEHTGDITATGEITG-RDLDGKPRL 282 (451)
T ss_pred -------------cCccc-cccCceeeCCcccCCCe-eecHHHHHHHHHHHHHHHHHHhhhhhhHHhHhC-CcCccCccc
Confidence 69987 89999999999999998 999999999999999999999999999999998 5544 5999
Q ss_pred CcccccccC
Q 020061 323 SRGVGWQVI 331 (331)
Q Consensus 323 ~rgi~~dGl 331 (331)
+||+++||+
T Consensus 283 ~rg~~aDGl 291 (451)
T COG2233 283 RRGLLADGL 291 (451)
T ss_pred ccceeeccH
Confidence 999999996
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=100.00 E-value=2.3e-47 Score=378.66 Aligned_cols=262 Identities=17% Similarity=0.331 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHh
Q 020061 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (331)
Q Consensus 35 ~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~ 114 (331)
.+++++|+||+++|+++++++|+++++++|+|++|+.+++|+++++||++|++|+++|+|||++||+||+|++++.++..
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred hcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccchh-----
Q 020061 115 AGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAK----- 189 (331)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~~----- 189 (331)
.....+ .+++..+++.+|+.+++|++++++|++++++|++|+|||+|+|+++++||++|++.+++++.+
T Consensus 88 ~~~~~g------~~~~~~~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~ 161 (433)
T PRK11412 88 GEASRG------TPINDIATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGI 161 (433)
T ss_pred cccccC------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccC
Confidence 211000 011234555566899999999999999999999999999999999999999999999986521
Q ss_pred ----------hhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHH-HHhhcCCCCCCCcccccccccc
Q 020061 190 ----------CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH-LLTVGGAYNDAAPKTQASCRTD 258 (331)
Q Consensus 190 ----------~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~-~~g~~g~~~~~~~~~~~~~~~d 258 (331)
++.+++.++++++.+++|.| +++|++++++|+++||++|. .+|. |
T Consensus 162 ~~~~~~~~~~~~~~a~~~l~~il~~~~~~~-------g~~~~~svLiGiv~G~v~a~~~~g~-----------------d 217 (433)
T PRK11412 162 ADPNGKIQLPPFGLSVAVMCLVLAMIIFLP-------QRIARYSLLVGTIVGWILWAFCFPS-----------------S 217 (433)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHHhCC-----------------C
Confidence 34577777777888888774 57999999999999999865 4432 6
Q ss_pred cccccCCCCccccccccccCCCc-ccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCcccccccC
Q 020061 259 RAGLIDAAPWIRVPWPFQWGAPS-FDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQVI 331 (331)
Q Consensus 259 ~~~~v~~a~w~~~P~~~~fg~P~-f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dGl 331 (331)
++. +.+++|. +++||.|. ||+++++++++++++.++|++||+.+++|.++++.+++++++||+.+||+
T Consensus 218 ~~~-v~~a~w~----~~pfG~P~~F~~~~il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi 286 (433)
T PRK11412 218 HSL-SGELHWQ----WFPLGSGGALEPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGF 286 (433)
T ss_pred cch-hccCCce----eecCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccH
Confidence 664 6788994 44589995 99999999999999999999999999999998544548899999999995
No 4
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=100.00 E-value=1.1e-43 Score=353.06 Aligned_cols=268 Identities=19% Similarity=0.339 Sum_probs=224.8
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCccceeec
Q 020061 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS-LFGTRLPAVMG 100 (331)
Q Consensus 22 ~~~~y~~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~-~~G~rlPi~~g 100 (331)
.+..|++|||||+++++++|+||+++|+++++++|+++ |+|++ ++++++|++|++|+ .+|+|+|+++|
T Consensus 17 ~~~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~G 85 (429)
T TIGR03616 17 EHHPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYLG 85 (429)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEEc
Confidence 44789999999999999999999999999999999997 57775 57999999999997 47999999999
Q ss_pred cccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhH---HhHhhhcCcchHHHHHHHHhh
Q 020061 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLW---RNVTRFLSPLSVVPLISLVGF 177 (331)
Q Consensus 101 ~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~---~~l~~~fpP~V~G~vv~lIGl 177 (331)
+||+|++++.++.... +.+. +.++++++|+++++|++++++++++.. ++++|+|||+|+|+++++||+
T Consensus 86 ~sf~f~~~~~~~~~~~-~~~~--------~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGl 156 (429)
T TIGR03616 86 SSAAFVGAVIAATGYN-GQGT--------NPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGL 156 (429)
T ss_pred CcHHHHHHHHHHHhhc-ccCC--------cchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999987664211 1110 136899999999999999999998544 899999999999999999999
Q ss_pred hhhhhhhccchh---hhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 020061 178 GLYEFGFPGVAK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQAS 254 (331)
Q Consensus 178 sl~~~~~~~~~~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~ 254 (331)
++++.++++.+. ....++++++.+++++++.| +++|++++++|+++||++|+.++.. ++..
T Consensus 157 sL~~vg~~~~~~~~~~~~~al~tl~~i~l~~l~~~-------~~l~~~avLiGivvG~iva~~l~~~---------~g~~ 220 (429)
T TIGR03616 157 NLAPIAVKSVSASGFDSWMAVLTILCIGAVAVFTR-------GMLQRLLILVGLIAAYLAYFILTNV---------FGLG 220 (429)
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhh---------cCCC
Confidence 999999987642 12357777777777787775 4799999999999999999887420 0111
Q ss_pred cccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCcccccccC
Q 020061 255 CRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQVI 331 (331)
Q Consensus 255 ~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dGl 331 (331)
++.|++. +++++|+++|. |+.|+||++.++++++.++++++|++||+.++++..+ ++.| ++++|++.+||+
T Consensus 221 ~~vd~s~-v~~a~~~~lP~---~~~p~f~~~~il~~~~~~lv~~~esiG~~~a~~~~~~-~~~~-~~i~r~l~adGl 291 (429)
T TIGR03616 221 KAVDFSP-ISQAAWFGLPN---FHTPVFNANAMLLIAPVALILVAENLGHFKAVAGMTG-RNLD-PYMGRAFVGDGL 291 (429)
T ss_pred ccccCcc-cccCccccCCc---CCCceEcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC-CCCC-chhccchhhhhH
Confidence 2368875 78899999995 6789999999999999999999999999999999997 4443 469999999995
No 5
>PRK10720 uracil transporter; Provisional
Probab=100.00 E-value=1.5e-43 Score=352.30 Aligned_cols=256 Identities=19% Similarity=0.337 Sum_probs=223.5
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeec
Q 020061 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMG 100 (331)
Q Consensus 22 ~~~~y~~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~-G~rlPi~~g 100 (331)
++..|++|||||+.+++++|+||+++|+++++++|+++ |+|+++ ++++||++|++|++. |.|+|++||
T Consensus 1 ~~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G 69 (428)
T PRK10720 1 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLG 69 (428)
T ss_pred CCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEe
Confidence 35789999999999999999999999999999999987 788764 789999999999985 569999999
Q ss_pred cccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh--h-HHhHhhhcCcchHHHHHHHHhh
Q 020061 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG--L-WRNVTRFLSPLSVVPLISLVGF 177 (331)
Q Consensus 101 ~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg--~-~~~l~~~fpP~V~G~vv~lIGl 177 (331)
+||+|+++++++.. .+||+++|+++++|+++++++++. + .+|++|+|||.|+|+++++||+
T Consensus 70 ~sfa~i~~~~~~~~----------------~~~~~~lgav~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl 133 (428)
T PRK10720 70 SSFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGL 133 (428)
T ss_pred CcHHHHHHHHHHHH----------------ccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHH
Confidence 99999999877653 369999999999999999999962 1 5689999999999999999999
Q ss_pred hhhhhhhccch-----------hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020061 178 GLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (331)
Q Consensus 178 sl~~~~~~~~~-----------~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~ 246 (331)
++.+.++++.+ .++.+++++++++++++++.| +++|++++++|+++||++++.+|.
T Consensus 134 ~L~~~~~~~~g~~~~~~~~~~~~~~~lalv~l~iil~~~~~~k-------g~~~~~~iLigIvvG~ila~~lG~------ 200 (428)
T PRK10720 134 ELAGVAAGMAGLLPAEGQTPDSKTIIISMVTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGM------ 200 (428)
T ss_pred HhHHHHHhhccccCCCCcccchHHHHHHHHHHHHHHHHHHHhc-------cHHHHhHHHHHHHHHHHHHHHhcC------
Confidence 99999987553 246678888888777777774 578999999999999999999975
Q ss_pred CCcccccccccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCccc
Q 020061 247 AAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV 326 (331)
Q Consensus 247 ~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi 326 (331)
.|++. +.+++|+++|. |+.|+||+..++.+++.+++.++|++|++.++++..+++..+++++||++
T Consensus 201 ----------~d~~~-v~~a~~~~lP~---~~~P~fd~~~il~l~~~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l 266 (428)
T PRK10720 201 ----------VDTTP-IIEAHWFALPT---FYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 266 (428)
T ss_pred ----------CCHHH-hhcCccccCCC---CCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCccccchH
Confidence 36654 67899999996 56689999999999999999999999999999999874333568999999
Q ss_pred ccccC
Q 020061 327 GWQVI 331 (331)
Q Consensus 327 ~~dGl 331 (331)
.+||+
T Consensus 267 ~adGl 271 (428)
T PRK10720 267 FANGL 271 (428)
T ss_pred hhhhH
Confidence 99985
No 6
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=100.00 E-value=1.2e-42 Score=344.83 Aligned_cols=260 Identities=26% Similarity=0.464 Sum_probs=230.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhC---CccceeeccccchHH
Q 020061 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFG---TRLPAVMGGSYTFVP 107 (331)
Q Consensus 31 ~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G---~rlPi~~g~sf~~l~ 107 (331)
|||+++++.+|+||+++|+++++++|++++++. +|++|+++++|++++++|++|++|++.. .|+|.++|+||+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 799999999999999999999999999999999 9999999999999999999999999743 347999999999999
Q ss_pred HHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh--h-hHHhHhhhcCcchHHHHHHHHhhhhhhhhh
Q 020061 108 STISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--G-LWRNVTRFLSPLSVVPLISLVGFGLYEFGF 184 (331)
Q Consensus 108 ~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~t--g-~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~ 184 (331)
+.+....+ .++++++|+++++|+++++++++ + ..++++|+|||.|+|+++++||+++++.++
T Consensus 80 ~~~~~~~~---------------~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l 144 (415)
T TIGR00801 80 PMIAIGSG---------------LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAV 144 (415)
T ss_pred HHHHHHhc---------------cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHH
Confidence 98766532 46899999999999999999985 3 357889999999999999999999999999
Q ss_pred ccch--------------hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcc
Q 020061 185 PGVA--------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPK 250 (331)
Q Consensus 185 ~~~~--------------~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~ 250 (331)
++++ .++.+++++++++++++++.| +++|+.++++|+++||++++.+|.
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~vg~~~l~~~vl~~~~~~-------g~~~~~aiLigiv~g~i~a~~lg~---------- 207 (415)
T TIGR00801 145 KMAAGGEAAMSSATYGSLENLGVAFVVLALIILLNRFGK-------GFLKSISILIGILVGYILALFMGI---------- 207 (415)
T ss_pred HHhccCCCcccccccCchhhHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHcCC----------
Confidence 8763 135677888888888887775 478999999999999999999975
Q ss_pred cccccccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCccccccc
Q 020061 251 TQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQV 330 (331)
Q Consensus 251 ~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dG 330 (331)
.|+++ +.++||+++|++++|| |+||+..+.+++++++++++|++|++.+++|.+|++..+++++||++.+||
T Consensus 208 ------~~~~~-v~~~~~~~lP~~~~~g-~~f~~~~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adG 279 (415)
T TIGR00801 208 ------VDFSP-VIDAPWFSLPTPFTFG-PSFEWPAILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADG 279 (415)
T ss_pred ------ccchh-hccCcccccCCccCCC-ceecHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhh
Confidence 46655 6788999999998888 799999999999999999999999999999999854333789999999998
Q ss_pred C
Q 020061 331 I 331 (331)
Q Consensus 331 l 331 (331)
+
T Consensus 280 l 280 (415)
T TIGR00801 280 L 280 (415)
T ss_pred H
Confidence 5
No 7
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=100.00 E-value=1.6e-43 Score=348.27 Aligned_cols=263 Identities=30% Similarity=0.574 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH-hCCccceeeccccchHHHHHHHH
Q 020061 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL-FGTRLPAVMGGSYTFVPSTISII 113 (331)
Q Consensus 35 ~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~-~G~rlPi~~g~sf~~l~~~~ai~ 113 (331)
+|++++|+||+++|++.++++|.++++++|+ ++|+.++++++++++|++|++|++ +|+|+|+++|+|+.+++......
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhccc
Confidence 4899999999999999999999999999999 888889999999999999999999 89999999999999998433221
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccchhh---
Q 020061 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKC--- 190 (331)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~~~--- 190 (331)
.. .+.++.++++++|+++++|++++++++++.++|++|+|||.|.|+++++||+++.+.++++++.+
T Consensus 80 g~----------~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~ 149 (389)
T PF00860_consen 80 GM----------AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGN 149 (389)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---
T ss_pred cc----------ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhcccccccc
Confidence 11 02345799999999999999999999999999999999999999999999999999999876532
Q ss_pred -----------hhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccccccc
Q 020061 191 -----------VEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDR 259 (331)
Q Consensus 191 -----------~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~ 259 (331)
..++..+++..+.++.++ ++++|++++++|+++||++++++|. .|+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ailigi~~g~i~~~~~g~----------------~~~ 206 (389)
T PF00860_consen 150 PDGLLVGDGKNLGLAVLTLLFILLLSLFL-------KGFLRKGAILIGIIAGWIVAAILGV----------------VDF 206 (389)
T ss_dssp BTT-B---HHHHHHHHHHHHHHHHHHHSS-------STTTTTHHHHHHHHHHHHHHHHHHH----------------TTS
T ss_pred ccccccccccccccccccchhhhhhhhhh-------hhhcccccchhhhhhhhhhhhcccc----------------ccc
Confidence 345666666677777776 4578999999999999999999986 366
Q ss_pred ccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCcccccccC
Q 020061 260 AGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQVI 331 (331)
Q Consensus 260 ~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dGl 331 (331)
++.++++||+++|++++|++|+||+.++++++.+++++++|++||+.+++|..+.+++++++++|++.+||+
T Consensus 207 ~~~~~~~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~ 278 (389)
T PF00860_consen 207 SPSVSSAPWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGL 278 (389)
T ss_dssp SH-HHHS-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHH
T ss_pred CcccccccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeee
Confidence 543678999999999999999999999999999999999999999999999999666668999999999984
No 8
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=100.00 E-value=1.5e-40 Score=328.94 Aligned_cols=249 Identities=32% Similarity=0.558 Sum_probs=221.7
Q ss_pred HHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHH----HhCCccceeeccccchHHHHHHHHhhc
Q 020061 41 GFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQS----LFGTRLPAVMGGSYTFVPSTISIILAG 116 (331)
Q Consensus 41 glQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~----~~G~rlPi~~g~sf~~l~~~~ai~~~~ 116 (331)
|+||+++|+++++++|++++++.|+|++|+.++++++++++|++|++|+ .+|+|+|+++|+|++++++......+
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~- 79 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG- 79 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh-
Confidence 6899999999999999999999999999999999999999999999998 46899999999999999987766432
Q ss_pred ccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccch--------
Q 020061 117 RFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-------- 188 (331)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~-------- 188 (331)
+++++++|+++++|++++++| ++++|++|+|||.|+|.++++||+++.+.++++..
T Consensus 80 --------------~~~~~~~ga~~v~Gii~illg--~~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~~~~ 143 (406)
T TIGR03173 80 --------------GGLGAIFGAVIVAGLFVILLA--PFFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGAPDF 143 (406)
T ss_pred --------------hhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Confidence 479999999999999999999 47899999999999999999999999999987652
Q ss_pred ---hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccccCC
Q 020061 189 ---KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA 265 (331)
Q Consensus 189 ---~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~ 265 (331)
.++.+++.++++++++.++. |+++|++++++++++||++++.+|. .|++. +.+
T Consensus 144 ~~~~~~~l~l~~l~~~il~~~~~-------~~~~~~~aiLi~ivvg~iva~~~g~----------------~~~~~-i~~ 199 (406)
T TIGR03173 144 GSPQNLGLALLTLVIILLLNRFG-------KGFLRSIAVLLGLVVGTIVAAALGM----------------VDFSG-VAE 199 (406)
T ss_pred cchHHHHHHHHHHHHHHHHHHHh-------hhHHHHhHHHHHHHHHHHHHHHhcC----------------CCchh-hcc
Confidence 23567777777777666665 4578999999999999999999975 36554 677
Q ss_pred CCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCcccccccC
Q 020061 266 APWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQVI 331 (331)
Q Consensus 266 a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dGl 331 (331)
+||+.+|++++|+.|+||++.+..++.+++++++|++|++.++++..+ ++.|++++||++.+||+
T Consensus 200 ~~~~~~P~~~~~~~P~f~~~~~~~~~~~~lv~~~esig~~~a~~~~~g-~~~~~~~~~~~l~~~Gi 264 (406)
T TIGR03173 200 APWFALPTPFHFGAPTFDLVAILTMIIVYLVSMVETTGDFLALGEITG-RPITEKDLAGGLRADGL 264 (406)
T ss_pred CCeeeCCCCCcCCCCeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCchhccchHHhccH
Confidence 899999998889999999999999999999999999999999999987 56677899999999985
No 9
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.91 E-value=1.5e-22 Score=198.11 Aligned_cols=242 Identities=14% Similarity=0.164 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhh
Q 020061 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (331)
Q Consensus 36 ~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~ 115 (331)
..+..|+-.+++-+++.+++-+..+++.|++++|+++++++.++.+|++|++|++. +|+|++++|| ..+.++.+...
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~-~r~Pi~~awS--tPGaAll~~~~ 98 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIR-FKTPVLTAWS--APGAALLVTGF 98 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCeeeecC--chHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999995 8999999999 34444443332
Q ss_pred cccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccchhhhhhHH
Q 020061 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (331)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~~~~~l~~ 195 (331)
.+ .+++++.|+++++|++.+++|++|+++|++|++|+.+.+.++..+.+.+.-..++...+.+.++.
T Consensus 99 ~~-------------~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~~~~pll~~ 165 (395)
T TIGR00843 99 PG-------------ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAALDGLFLICF 165 (395)
T ss_pred CC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 22 47999999999999999999999999999999999999999998866654444444444554443
Q ss_pred HHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccccCCCCcccccccc
Q 020061 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (331)
Q Consensus 196 ~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~ 275 (331)
..++..++ . ||+++++++++++++|.++++..|.. |.++ +.. . +.-|
T Consensus 166 ~mll~~l~----~-------~r~~Pr~avl~aLlvG~iva~~~G~~----------------~~~~-~~~-~-l~~p--- 212 (395)
T TIGR00843 166 SMLLCWLA----S-------KAFAPRYAMIAALICGIAFSFALGDM----------------NPTD-LDF-K-IALP--- 212 (395)
T ss_pred HHHHHHHH----H-------HHhcchHHHHHHHHHHHHHHHHhcCC----------------Cccc-ccc-c-cccc---
Confidence 33222221 2 45678899999999999999998752 2221 110 1 2223
Q ss_pred ccCCCcccHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCccccccc
Q 020061 276 QWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPPSVLSRGVGWQV 330 (331)
Q Consensus 276 ~fg~P~f~~~~i~~~-~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi~~dG 330 (331)
.|..|+||+...+.. ++.+++++.+++-+-.++.|..|+++|. |+-+.++|
T Consensus 213 ~~~~P~fs~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~----~~~~~~tG 264 (395)
T TIGR00843 213 QFIAPDFSFAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPA----KPIIAAAG 264 (395)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCc----hHHHHHHH
Confidence 466799999998887 8999999999998899999999976552 44444444
No 10
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.86 E-value=8.5e-20 Score=176.31 Aligned_cols=235 Identities=20% Similarity=0.232 Sum_probs=190.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhh
Q 020061 36 EAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILA 115 (331)
Q Consensus 36 ~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~ 115 (331)
.++..|+-.+++-+++.+++-+..+++.|++++|+.+++.+..+.+|+.|+.-++. +|+|++.++| ..+.++.+...
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~-yR~Pi~~AWS--tPGaAlL~~~~ 82 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLR-YRMPIVTAWS--TPGAALLATSL 82 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhhcc--hHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999999999994 9999999998 34554444432
Q ss_pred cccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccchhhhhhHH
Q 020061 116 GRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVAKCVEIGL 195 (331)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~~~~~l~~ 195 (331)
.+ .+++|+.|+++++|++.+++|.+|.++|+.|++|+.+...++..+-+...-..++...++..+..
T Consensus 83 ~~-------------~~~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~a~~~~P~l~~ 149 (378)
T PF03594_consen 83 PG-------------YSFAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFTALQADPLLVG 149 (378)
T ss_pred cC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22 57999999999999999999999999999999999999999999944333333444556666666
Q ss_pred HHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccccCCCCcccccccc
Q 020061 196 PQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF 275 (331)
Q Consensus 196 ~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~ 275 (331)
..++..++. ||+.++++++..+++|.++++..|.. +..+ + ++ .+++|
T Consensus 150 ~ml~~~l~~-----------~r~~pr~av~~al~~g~~~a~~~g~~----------------~~~~-~---~~-~~~~p- 196 (378)
T PF03594_consen 150 PMLAVFLLA-----------RRFSPRYAVLAALVAGVAVAALTGQL----------------HPSA-L---QL-SLAHP- 196 (378)
T ss_pred HHHHHHHHH-----------HHHcchhHHHHHHHHHHHHHHhcCCC----------------Cccc-c---cc-cccee-
Confidence 665555544 34566789999999999999887642 2221 1 11 33332
Q ss_pred ccCCCcccHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhCCCCCCc
Q 020061 276 QWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPP 319 (331)
Q Consensus 276 ~fg~P~f~~~~i~~~-~~~~iv~~~esiG~~~a~~~~~~~~~~~~ 319 (331)
.|-.|+||++.++.+ ++.++++|..++-.-.++-|..|+++|.+
T Consensus 197 ~~~~P~Fs~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~ 241 (378)
T PF03594_consen 197 VFTTPEFSWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVN 241 (378)
T ss_pred EEECCcccHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCch
Confidence 467799999999998 99999999999999999999999876654
No 11
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=8.6e-19 Score=166.52 Aligned_cols=233 Identities=23% Similarity=0.330 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHh
Q 020061 35 PEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIIL 114 (331)
Q Consensus 35 ~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~ 114 (331)
++++..|++-+++-++++.++-+..+++.|.+++|+++++.+..+.+|+.|+.-++. +|+|++.+||. .+.++.+.+
T Consensus 20 p~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWST--PG~all~as 96 (402)
T COG3135 20 PQTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWST--PGAALLVAS 96 (402)
T ss_pred chhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecC--ccHHHHHhc
Confidence 478999999999999999988888888899999999999999999999999999995 99999999984 344444443
Q ss_pred hcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccc---hhhh
Q 020061 115 AGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---AKCV 191 (331)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~---~~~~ 191 (331)
..+ .++.|+.|+++++|++.++.|++|.+.|+.+.+||-+...++..| +.+++++.+ .++.
T Consensus 97 l~g-------------~s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~AmlAGI---LL~F~l~a~~a~~~~p 160 (402)
T COG3135 97 LGG-------------LSFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAAAMLAGI---LLRFGLKAFKALPTQP 160 (402)
T ss_pred cCC-------------CCHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHHHHHHHH---HHHHHHHHHhccCCCh
Confidence 232 579999999999999999999999999999999999999999988 666666544 4666
Q ss_pred hhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccccCCCCcccc
Q 020061 192 EIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRV 271 (331)
Q Consensus 192 ~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~ 271 (331)
.+....++.-+++-+ +-.+++++..+++|.+++.+.|.. +.. ..++-.+.
T Consensus 161 ~l~lpmv~~~ll~r~-----------f~pr~aV~aalvvgv~va~~~G~~----------------~~~---~~~~~~~~ 210 (402)
T COG3135 161 LLVLPMVLAYLLARV-----------FAPRYAVIAALVVGVLVAALLGDL----------------HTA---LVALEIST 210 (402)
T ss_pred HHHHHHHHHHHHHHH-----------cCchHHHHHHHHHHHHHHHHhCcc----------------ccc---ccccccCc
Confidence 666666555555433 345699999999999999998753 111 12333445
Q ss_pred ccccccCCCcccHHHHHHH-HHHHHHHhhhhHHHHHHHHHHhCCCCCCc
Q 020061 272 PWPFQWGAPSFDAGEAFAM-MMASFVALVESTGAFFAVARYASATPMPP 319 (331)
Q Consensus 272 P~~~~fg~P~f~~~~i~~~-~~~~iv~~~esiG~~~a~~~~~~~~~~~~ 319 (331)
| +|-.|+||+.+++.+ ++.++++|..++..-.++-|..|++++..
T Consensus 211 p---~~v~P~Fs~~A~l~lalPL~lvtmasQN~pGiAvLka~gY~pp~~ 256 (402)
T COG3135 211 P---TWVTPEFSFAAMLSLALPLFLVTMASQNLPGIAVLKAAGYQPPPS 256 (402)
T ss_pred c---eeeCCcccHHHHHHHhHHHHHHHHHhccCccceeehhcCCCCCCc
Confidence 5 588899999999998 89999999999999999999999866544
No 12
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=99.79 E-value=4.8e-18 Score=167.25 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=188.8
Q ss_pred CCCCcccccCCCC-ChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCcccee
Q 020061 20 QLPSISYCITSPP-PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAV 98 (331)
Q Consensus 20 ~~~~~~y~~~d~p-p~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~ 98 (331)
+..|..|+++|+- ..++++..|+..+++|.+...++|-+++++ |++. .....++++.++++|+++.++ .|+|+.
T Consensus 4 ~~~~~~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~a-g~~~---~av~~AT~l~a~~gs~~mgl~-An~P~a 78 (436)
T COG2252 4 GDLDRFFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAA-GMPV---GAVFVATCLAAAIGSIAMGLY-ANLPIA 78 (436)
T ss_pred hHHHHHhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhc-CCCc---hhHHHHHHHHHHHHHHHHHHH-HcCchh
Confidence 3467789999988 799999999999999999999999999987 6773 478889999999999999998 999999
Q ss_pred eccc---cchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcch-------H
Q 020061 99 MGGS---YTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLS-------V 168 (331)
Q Consensus 99 ~g~s---f~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V-------~ 168 (331)
++|. .+|..-.+ . ..++ ..||+++|+++++|+++++++++|++++++|.+|.-. +
T Consensus 79 lapgmglnAfFaftv-v-~~~g-------------i~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGI 143 (436)
T COG2252 79 LAPGMGLNAFFAFTV-V-LGMG-------------LSWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGI 143 (436)
T ss_pred hcchhhHHHHHHHHH-H-HhcC-------------CcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHH
Confidence 9876 22222211 2 2232 4699999999999999999999999999999999866 5
Q ss_pred HHHHHHHhhhhhhhhhccch----------hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHH
Q 020061 169 VPLISLVGFGLYEFGFPGVA----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLL 238 (331)
Q Consensus 169 G~vv~lIGlsl~~~~~~~~~----------~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~ 238 (331)
|.++.+||+.-......+-+ ....++++.+++++++ ..|++ ..++++||+..+++++++
T Consensus 144 GlFia~IgL~~~Givv~~~~tlv~LG~~~~p~vll~i~G~~l~~~L--~~~~i---------~Gaili~i~~~t~~g~~~ 212 (436)
T COG2252 144 GLFIALIGLKNAGIVVANPATLVALGDFTSPGVLLAILGLLLIIVL--VSRKI---------KGAILIGILVTTILGIIL 212 (436)
T ss_pred HHHHHHHHHhhCCeEEecCcceEEeecCCCchHHHHHHHHHHHHHH--HHhhc---------cHhhhHHHHHHHHHHHHh
Confidence 56666666653333221111 1355666666666665 33332 479999999999999999
Q ss_pred hhcCCCCCCCcccccccccccccccCCCCccccccc----cccCCC--cccHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q 020061 239 TVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWP----FQWGAP--SFDAGEAFAMMMASFVALVESTGAFFAVARYA 312 (331)
Q Consensus 239 g~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~----~~fg~P--~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~ 312 (331)
|.... +.+ . ....|.. .+.... ...++.+...+...+++.+|++|++.++++..
T Consensus 213 g~~~~---------------~~~-~----~~~~p~~~~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~a 272 (436)
T COG2252 213 GIDVH---------------FGG-L----VGAPPSLSPIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKA 272 (436)
T ss_pred ccccc---------------ccc-c----ccCCCCccchhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhc
Confidence 75210 100 0 0111211 111111 12255566778999999999999999999999
Q ss_pred CCCCCC--ccccCccccccc
Q 020061 313 SATPMP--PSVLSRGVGWQV 330 (331)
Q Consensus 313 ~~~~~~--~~~i~rgi~~dG 330 (331)
+..+.+ .++++|.+.+|+
T Consensus 273 g~~~~~g~~~~~~~al~~D~ 292 (436)
T COG2252 273 GLLDKNGKMPRIGKALLADS 292 (436)
T ss_pred CCcCCCCCccccchHHHHhH
Confidence 965544 478999998886
No 13
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=98.69 E-value=3.2e-06 Score=87.35 Aligned_cols=230 Identities=15% Similarity=0.212 Sum_probs=143.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhh--hccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHH
Q 020061 34 WPEAILLGFQHYIVMLGTTVLIPTSLV--PQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTIS 111 (331)
Q Consensus 34 ~~~~l~lglQh~l~~~~~~i~vP~ii~--~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~a 111 (331)
++.-++.|+.=..+ ++|.-++ ...|.++. +-+.++-++.++-+++|.+-=.+-||.-+.......
T Consensus 21 l~~Dl~AGltva~v------alP~ama~a~~aGv~p~-------~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~ 87 (554)
T COG0659 21 LRGDLLAGLTVAAV------ALPLAMAFAIAAGVPPE-------AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAA 87 (554)
T ss_pred hHHHHHHHHHHHHH------HhHHHHHHHHHcCCCHH-------HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHH
Confidence 55567788764444 4453332 33688884 667777788888888866666688877554443333
Q ss_pred HHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccc----
Q 020061 112 IILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGV---- 187 (331)
Q Consensus 112 i~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~---- 187 (331)
+..+.- .++++.+.-+.+++|++++++|+.++ +++.+++|..|+--++..||+.++-.-+...
T Consensus 88 ~i~~~~------------~~g~~~~~~~tllaGv~~i~~G~lRL-G~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~ 154 (554)
T COG0659 88 VIASLV------------ETGLALAFLATLLAGVFQILLGLLRL-GRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLA 154 (554)
T ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 332100 15789999999999999999999875 8999999998888888888886654433211
Q ss_pred --h----------------hhhhhHHHHHHHHHHHHHHcccchhccccchhhH-HHHHHHHHHHHHHHHHhhcCCCCCCC
Q 020061 188 --A----------------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRF-AVIFSVVIVWIYAHLLTVGGAYNDAA 248 (331)
Q Consensus 188 --~----------------~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~-aiLigi~vG~i~a~~~g~~g~~~~~~ 248 (331)
. .|+.-..+.++.+.++ .+.++ +.+++ +-++++++++.+++.+....
T Consensus 155 ~~~~~~~~~~~~l~~~~~~~~~~~~~lg~~~l~il-~~~~~-------~~~~~P~~liaiv~~t~i~~~~~~~~------ 220 (554)
T COG0659 155 SKVSGFWAKVSALFTVLLTINLATLLLGLLTLAIL-LFLPR-------LTPRIPSPLIALVLGTLIVWIFPLDS------ 220 (554)
T ss_pred ccccchHHHHHHHHHhcccccHHHHHHHHHHHHHH-HHccc-------hhhhCCcHHHHHHHHHHHHHHhcCCc------
Confidence 0 0121112222222222 12332 22333 57999999999999986521
Q ss_pred cccccccccccccccCCCCccccccccccCCCcccH----HHHHHHHHHHHHHhhhhHHHHHHHHHHhCCC
Q 020061 249 PKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDA----GEAFAMMMASFVALVESTGAFFAVARYASAT 315 (331)
Q Consensus 249 ~~~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~----~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~ 315 (331)
..|+ .+..+.....|| |+.|.+++ ..+...+.++++..+|++-+..+.++..|++
T Consensus 221 ~~~G----~i~~~lp~~~~~--------~~~P~~~~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~ 279 (554)
T COG0659 221 LRYG----EIPGSLPSGLPH--------FRLPNVSLSLLLALLPYALALALLGLLESLLTAVSFDGMTGTK 279 (554)
T ss_pred hhcc----cCcccCCcCCCc--------ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 0111 011111122233 44455544 4445568899999999999999999999853
No 14
>PRK11660 putative transporter; Provisional
Probab=98.30 E-value=0.00014 Score=75.49 Aligned_cols=121 Identities=13% Similarity=0.221 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHH
Q 020061 33 PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI 112 (331)
Q Consensus 33 p~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai 112 (331)
.+..-+..|+.-.+....-.+++..+ .|+++. .-+..+-+.+++-+++|+.--++.||+...-.....+
T Consensus 28 ~l~~D~iAGltv~~~~iPq~mayA~l----ag~pp~-------~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~ 96 (568)
T PRK11660 28 RFTRDLIAGITVGIIAIPLAMALAIA----SGVPPQ-------YGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPV 96 (568)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH----cCCChH-------HHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHH
Confidence 35677888888666665554444432 578874 4577788888999988776668888875422211111
Q ss_pred HhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhh
Q 020061 113 ILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLY 180 (331)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~ 180 (331)
..+ .+.+.+..+.+++|++++++|++++ +++.+++|..|+.-++..+|+.+.
T Consensus 97 ~~~---------------~~~~~~~~~~~l~Gii~~l~gllrl-G~l~~fip~pVi~Gf~~g~al~I~ 148 (568)
T PRK11660 97 SQQ---------------FGLAGLLVATLMSGIILILMGLARL-GRLIEYIPLSVTLGFTSGIGIVIA 148 (568)
T ss_pred HHH---------------hhHHHHHHHHHHHHHHHHHHHHHhh-hHHHhcCcHHHHHHHHHHHHHHHH
Confidence 111 3456677779999999999999975 789999999888888887777443
No 15
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=98.06 E-value=0.00099 Score=69.18 Aligned_cols=244 Identities=16% Similarity=0.154 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH
Q 020061 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (331)
Q Consensus 34 ~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~ 113 (331)
+..-+..|+.-.+....-.+....+ .|+++. .-+..+.+..++-+++|+.-=++.||....-.....+.
T Consensus 14 l~~Di~aGltv~~~~iP~~~ayA~l----aglpp~-------~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~~v 82 (563)
T TIGR00815 14 FKGDLMAGLTVGILLIPQAMAYAIL----AGLSPI-------YGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGSVI 82 (563)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH----cCCCch-------hhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHHHH
Confidence 4567788887655554444443332 488874 55778888888999888777777787642222111122
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhhhh------hhcc-
Q 020061 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLYEF------GFPG- 186 (331)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~------~~~~- 186 (331)
.+.+... ++. ....+.+.-..+++|++++++|+.++ +++.+++|..|+.-++..+|+.++-. +.+.
T Consensus 83 ~~~~~~~---~~~---~~~~~~a~~l~~l~Gi~~~~~g~lrl-G~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~ 155 (563)
T TIGR00815 83 ARVGLQY---LFD---CDAIRLAFTLTLLAGIFQVILGLLRL-GFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIF 155 (563)
T ss_pred HHhcCCC---Ccc---cHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 2222111 000 12355666789999999999999875 89999999999888888888855522 2111
Q ss_pred ----------------ch-h---hhhhHHHHHHHHHHHHHHcccchhccccc--hhhHHHHHHHHHHHHHHHHHhhcCCC
Q 020061 187 ----------------VA-K---CVEIGLPQLVIIVFISQYLPHVIKRGKNI--FDRFAVIFSVVIVWIYAHLLTVGGAY 244 (331)
Q Consensus 187 ----------------~~-~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~--~r~~aiLigi~vG~i~a~~~g~~g~~ 244 (331)
.. . ||....+.++.++++ ...|++.++.++. ...-..++.+++++++++.++...
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~-- 232 (563)
T TIGR00815 156 NTRTDTLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFL-LYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKK-- 232 (563)
T ss_pred CCCCChHHHHHHHHHHhhhccccchHHHHHHHHHHHHH-HHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCC--
Confidence 01 1 232222222222211 1222221100111 112356788888888776653210
Q ss_pred CCCCcccccccccccccccCCCCccccccccccCCCcccHHH----HHHHHHHHHHHhhhhHHHHHHHHHHhCCC
Q 020061 245 NDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGE----AFAMMMASFVALVESTGAFFAVARYASAT 315 (331)
Q Consensus 245 ~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~----i~~~~~~~iv~~~esiG~~~a~~~~~~~~ 315 (331)
.+.. .+.+-|- ++| .+..|.+|+.. +...+.++++..+|++....+.++..+++
T Consensus 233 ------------~~~~-~~g~ip~-g~p---~~~~~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~ 290 (563)
T TIGR00815 233 ------------QGVS-ILGHIPS-GLS---FFPPITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYK 290 (563)
T ss_pred ------------CCeE-EEeecCC-CCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0110 0111110 112 23445666544 34458899999999999999998887743
No 16
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=94.64 E-value=3.5 Score=44.03 Aligned_cols=211 Identities=17% Similarity=0.210 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH----hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 020061 76 TLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII----LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLG 151 (331)
Q Consensus 76 a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~----~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg 151 (331)
.-+..+-+..++-.++|+--.+..|+- +.+- +.+. ..-.......++ ...++.+.-..+++|++++++|
T Consensus 111 yGLYssf~~~~iY~~fGtsr~isiG~~-av~s--Lmv~~~v~~~v~~~~~~~~~----~~~i~va~~lt~l~Giiq~~mG 183 (665)
T KOG0236|consen 111 YGLYSSFFPPLIYAIFGTSRHVSIGPF-AVVS--LMVGTVVSQVVLSEAPSNDI----ATTIQVATTLTFLTGIIQLILG 183 (665)
T ss_pred HHHHHHHHHHHHheeccCCCcccccHH-HHHH--HHHHHHHHHHHhccCCCcCc----chhHHHHHHHHHHHHHHHHHHH
Confidence 455666777788877888888887763 1111 1111 000000000000 1467788888999999999999
Q ss_pred hhhhHHhHhhhcCcchHHHHHHHHhhhhhhh------hhccch-----------------h------hhhhHHHHHHHHH
Q 020061 152 FSGLWRNVTRFLSPLSVVPLISLVGFGLYEF------GFPGVA-----------------K------CVEIGLPQLVIIV 202 (331)
Q Consensus 152 ~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~------~~~~~~-----------------~------~~~l~~~~l~~iv 202 (331)
+.++ +++.+++|..++.-++...++...-. ++++.. . ++.++...+. ++
T Consensus 184 ~lrL-Gfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L 261 (665)
T KOG0236|consen 184 LLRL-GFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPKTLATLVLSLIFLV-VL 261 (665)
T ss_pred HHhc-ChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcccccchhhhhHHHHHH-HH
Confidence 9865 99999999766555555555432222 122111 0 1222222222 22
Q ss_pred HHHH-HcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccccCCCCcccccccc-ccCCC
Q 020061 203 FISQ-YLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPF-QWGAP 280 (331)
Q Consensus 203 ~~~~-~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~-~fg~P 280 (331)
.+.+ +-+.. +++-.+...-.-++.+++++++++.+...+.+.. ..+. .+|.-+ +...|
T Consensus 262 ~~~k~~~~~~-~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~--------------~~~~-----~i~~g~~~~~lp 321 (665)
T KOG0236|consen 262 LLTKELNPKF-KKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGP--------------IIVG-----EIPRGFPPPSLP 321 (665)
T ss_pred HHHHHhhhhh-cccceeecccHHHHHHHHHHHHHHHhccccccCC--------------eeec-----cCCCCCCCCCCC
Confidence 3333 22211 1000112334578999999999988865321000 0010 122111 12334
Q ss_pred ccc--HHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCC
Q 020061 281 SFD--AGEAFAMMMASFVALVESTGAFFAVARYASAT 315 (331)
Q Consensus 281 ~f~--~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~ 315 (331)
.++ .......+.+.++...|+++--.+.++.-+++
T Consensus 322 ~~~~~~~~~~~~~~i~iva~~~~iai~k~fa~~~~y~ 358 (665)
T KOG0236|consen 322 PLSLTPQVIPDAFAIAIVALLEHIAIGKSFASLHGYK 358 (665)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCe
Confidence 333 34456678999999999988888888777644
No 17
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=93.36 E-value=15 Score=40.51 Aligned_cols=218 Identities=12% Similarity=0.092 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 020061 72 KVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLG 151 (331)
Q Consensus 72 ~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg 151 (331)
.=++=+++.++++.++++++ ++.|+..-++...+.......-.. +.... -++ ..++.-. -+-++++.++++
T Consensus 401 ~gv~E~Llstai~Giifslf-~GQPL~IlG~TGPilvF~~~ly~~-c~~~~-~~y----l~~~~Wi--giW~~~~~~lla 471 (900)
T TIGR00834 401 MGVSELLISTAVQGVLFALL-AAQPLLVVGFSGPLLVFEEAFFSF-CESNG-LEY----LVGRVWI--GLWLVLLVLLLV 471 (900)
T ss_pred chHHHHHHHHHHHHHHHhhh-cCCceEEecCcccHHHHHHHHHHH-HhhcC-Cch----HHHHHHH--HHHHHHHHHHHH
Confidence 34567889999999999998 667766643322222222221110 00000 011 1122111 344556666676
Q ss_pred hhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccch-------------------------------------------
Q 020061 152 FSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA------------------------------------------- 188 (331)
Q Consensus 152 ~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~------------------------------------------- 188 (331)
.+.. ..+.|+++...-=.+-++|++..+..+++..-
T Consensus 472 ~~~~-s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (900)
T TIGR00834 472 ATEG-SFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQGPSVSALLEKDCSKLGGTLG 550 (900)
T ss_pred HHhH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccccccccccccccccc
Confidence 6654 56677777655444445554435544442110
Q ss_pred -----hhhhhHHH---HHHHHHHHHHHcccchh------ccccchhhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccc
Q 020061 189 -----KCVEIGLP---QLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQAS 254 (331)
Q Consensus 189 -----~~~~l~~~---~l~~iv~~~~~~~~~~~------~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~ 254 (331)
.....++. ..+.++.+..+++++.. +.|+.+.-|++.+++++-+.+.+.++.... +.-+.
T Consensus 551 ~~~c~~~~~~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~v~~~~~~v~~-~kl~V----- 624 (900)
T TIGR00834 551 GNNCRFQPNTALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVLVDIFIGDTYT-QKLSV----- 624 (900)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHHHHHHhccCcc-cccCC-----
Confidence 00122232 23334445556665542 235677788999999999999887653210 00000
Q ss_pred cccccccc-cCCCCccccccccccCCCccc-HHHHHHHHHHHHHHhhhhHHHHH
Q 020061 255 CRTDRAGL-IDAAPWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVESTGAFF 306 (331)
Q Consensus 255 ~~~d~~~~-v~~a~w~~~P~~~~fg~P~f~-~~~i~~~~~~~iv~~~esiG~~~ 306 (331)
.-.|... -....|+--|.-.....|.+. +.++++.+.+++.-.+|+.=+..
T Consensus 625 -p~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~ 677 (900)
T TIGR00834 625 -PSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTL 677 (900)
T ss_pred -CCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 0012110 011467633321011113332 55667778888888888754333
No 18
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=91.46 E-value=0.28 Score=45.84 Aligned_cols=142 Identities=17% Similarity=0.208 Sum_probs=74.0
Q ss_pred HhhhhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccch-----------------------h--hhh---hHHHHHHHHH
Q 020061 151 GFSGLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA-----------------------K--CVE---IGLPQLVIIV 202 (331)
Q Consensus 151 g~tg~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~-----------------------~--~~~---l~~~~l~~iv 202 (331)
|+.| ++++.+++|..|+.-++..+|+.++...++.+- + +|. ++..++++ +
T Consensus 2 Gllr-lG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l 79 (280)
T PF00916_consen 2 GLLR-LGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVF-L 79 (280)
T ss_pred cccc-ccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHH-H
Confidence 4444 478999999999888888888866554433110 0 111 11111111 1
Q ss_pred HHHHHcccchhccccch-hhHHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccc-cccccCCCCccccccccccCCC
Q 020061 203 FISQYLPHVIKRGKNIF-DRFAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTD-RAGLIDAAPWIRVPWPFQWGAP 280 (331)
Q Consensus 203 ~~~~~~~~~~~~~~~~~-r~~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d-~~~~v~~a~w~~~P~~~~fg~P 280 (331)
.+..+.++ +.++++. +.-..++.++++.++++.++... . + .+ ..+....-|.+.+|+ .
T Consensus 80 ~~~~~~~~--~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~-~-------~----v~~~~~i~~~lp~~~~p~-~----- 139 (280)
T PF00916_consen 80 LIIRLLPK--RLPSRFWPPIPAPLIVVVLGTLLSWLFLLDK-Y-------G----VAIVGEIPSGLPPPSLPS-F----- 139 (280)
T ss_pred hhhhhhhh--hccccccccccccceeeehhhhhhhhhhhcc-c-------c----ccccccccccCccccCcc-c-----
Confidence 12222220 0011222 33356788888888877764310 0 0 11 111112233333442 1
Q ss_pred cccH----HHHHHHHHHHHHHhhhhHHHHHHHHHHhCC
Q 020061 281 SFDA----GEAFAMMMASFVALVESTGAFFAVARYASA 314 (331)
Q Consensus 281 ~f~~----~~i~~~~~~~iv~~~esiG~~~a~~~~~~~ 314 (331)
.+|+ ..+...+.++++..+|++.+..++++..++
T Consensus 140 ~~~~~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~ 177 (280)
T PF00916_consen 140 DISWSLILDLLPTALAIAIVGFIESLLIAKSIAKKTGY 177 (280)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhhhhhcccccc
Confidence 3333 334455788999999999999988887763
No 19
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=87.20 E-value=14 Score=36.91 Aligned_cols=167 Identities=11% Similarity=0.142 Sum_probs=94.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH
Q 020061 34 WPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (331)
Q Consensus 34 ~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~ 113 (331)
+...+-.++=.+.+....--..-+-..++.|.+.. +...+...|++|++-..+|. .++..+ -+..++
T Consensus 221 ~~a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p-----~~~~~~~tGl~sll~ApfGg-~~~nla----aitaAi--- 287 (395)
T TIGR00843 221 FAHSLNLALPLFLVSLAGQFAPGIAALKAAGYNAP-----AKPIIAAAGLAALFAAFAGG-ISIGIA----AITAAI--- 287 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhccCC-chhhhh----HHhHHH---
Confidence 44445555544433333222222444455555443 37788899999999998853 332111 111111
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh-hhHHhHhhhcCcchHHHHHHHHhhhhhhhhhccch----
Q 020061 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS-GLWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA---- 188 (331)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~t-g~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~---- 188 (331)
|.++|-| ++ ...=.++-+++|++++++|++ +.+-.+...+|+..+.. +-|+-|.+.-..+..
T Consensus 288 ------c~G~~ah---~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~---laGlAll~~~~~~l~~a~~ 354 (395)
T TIGR00843 288 ------CMGKDAH---ED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAA---LAGLALLGAIAGNIKIALH 354 (395)
T ss_pred ------hcCcccc---cC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 1111111 11 222357788999999999997 77788899999877654 334444444332221
Q ss_pred --hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHH
Q 020061 189 --KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHL 237 (331)
Q Consensus 189 --~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~ 237 (331)
++-+-+++++++.. .|+ .++...+-++|+++|.+.++.
T Consensus 355 ~~~~r~~a~~tflvta------Sg~-----~~~gigaafWgl~~G~~~~~~ 394 (395)
T TIGR00843 355 EDQERDAALIAFLATA------SGL-----HFLGIGSAFWGLCAGGLAYFI 394 (395)
T ss_pred CcchhHHHHHHHHHHH------hcC-----CcccccHHHHHHHHHHHHHHh
Confidence 24455566654433 332 356678999999999876543
No 20
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=86.61 E-value=16 Score=36.43 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhccCCChHHHHH------HHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH
Q 020061 40 LGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAK------VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII 113 (331)
Q Consensus 40 lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~------li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~ 113 (331)
.|.---.+|.+. +....++.+|++++-... ++.+.+|+.=+++++.= ..+++=-+||--..++. ++.
T Consensus 67 AgtIGkivMvsA---v~aafA~~lgL~~~Fv~envR~EllI~a~lFvil~Sgfl~P--~anLAGthgPmIpLIp~-iva- 139 (492)
T PF11840_consen 67 AGTIGKIVMVSA---VAAAFAAPLGLSPEFVIENVRYELLIAALLFVILFSGFLNP--RANLAGTHGPMIPLIPL-IVA- 139 (492)
T ss_pred HhhhhHHHHHHH---HHHHHhhccCCChhHhhhhhhhhhhHHHHHHHHHHHhccCc--cccccCCCCCcchhhHH-HHH-
Confidence 444444555443 223344557888754432 44444444333333322 45666556654333332 222
Q ss_pred hhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHHhhhhh----hhhhccch-
Q 020061 114 LAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLVGFGLY----EFGFPGVA- 188 (331)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lIGlsl~----~~~~~~~~- 188 (331)
.| +.+.+.|- .-|++-+++++++--+++.++-...|.|-.+.-+|++=. ..-..+..
T Consensus 140 --aG--------------gHPLalgi--lvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~~qi~kl~~wa~~ 201 (492)
T PF11840_consen 140 --AG--------------GHPLALGI--LVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLIGQIKKLFAWANG 201 (492)
T ss_pred --cC--------------CCcHHHHH--HHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHHHHHHHHHHHHhc
Confidence 21 23455553 447788888888888999999999888877776666221 11112221
Q ss_pred -hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhh
Q 020061 189 -KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTV 240 (331)
Q Consensus 189 -~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~ 240 (331)
+.-.++++.+.+.+++..|+.++ .| |-.+|-++-+++-++++.+|.
T Consensus 202 ~~~~~i~fvvi~~tiv~Ya~L~k~---~K---rWLaIPl~~~~a~~~a~~lGa 248 (492)
T PF11840_consen 202 FDMGYIAFVVIIVTIVLYAYLAKI---EK---RWLAIPLCSILAGVLAFALGA 248 (492)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHh---cc---chhhhhHHHHHHHHHHHHcCC
Confidence 23457788888888888888754 12 336888888888889999986
No 21
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=84.99 E-value=65 Score=35.36 Aligned_cols=232 Identities=12% Similarity=0.132 Sum_probs=118.1
Q ss_pred HHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHH----hhccc
Q 020061 43 QHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISII----LAGRF 118 (331)
Q Consensus 43 Qh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~----~~~~~ 118 (331)
--.+.++.+++...+..++.++- ..+-..-++=+++...++.++.+++|..=-+++|.+- .+.....+. .+++.
T Consensus 364 a~~lfiYfa~l~P~ItFG~ll~~-~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~Tg-P~lVfe~~lf~f~~~~~~ 441 (876)
T KOG1172|consen 364 AATLFIYFACLLPAITFGGLLGE-ATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTG-PLLVFEKALFKFCKDNGL 441 (876)
T ss_pred hHHHHHHHHhhhhHhhHHHHhhh-hccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCc-cHHHHHHHHHHHHhhCCC
Confidence 34555555554434444433222 2233456778899999999999998554445555542 222222221 11110
Q ss_pred CCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCc---chHHHHHHHHhhhhhhhhhc----------
Q 020061 119 SNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSP---LSVVPLISLVGFGLYEFGFP---------- 185 (331)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP---~V~G~vv~lIGlsl~~~~~~---------- 185 (331)
.+ ..++.-. .+-..++.++++.+.. ..+.++|+. ..-|..|++| .+..++.
T Consensus 442 ------dy----l~~r~wV--glW~~~l~illaa~~a-s~lv~~~TRfteEiF~~LIs~i---Fi~eai~kl~~i~~~~~ 505 (876)
T KOG1172|consen 442 ------DY----LAFRAWV--GLWTAFLLILLAATNA-SSLVKYITRFTEEIFGLLISLI---FIYEAIKKLIKIFKGLP 505 (876)
T ss_pred ------ch----hhHHHHH--HHHHHHHHHHHHHhhh-hHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHhhcCc
Confidence 11 1122111 2344556666666553 445566554 5566666655 5544443
Q ss_pred -c--------------ch--------------hhhhhHHHHHHHHHHHHHHcccchh------ccccchhhHHHHHHHHH
Q 020061 186 -G--------------VA--------------KCVEIGLPQLVIIVFISQYLPHVIK------RGKNIFDRFAVIFSVVI 230 (331)
Q Consensus 186 -~--------------~~--------------~~~~l~~~~l~~iv~~~~~~~~~~~------~~~~~~r~~aiLigi~v 230 (331)
+ .. ++..++++..+..+.+..++|.+.+ +.|++++-|++.+.+++
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~ 585 (876)
T KOG1172|consen 506 IEFDSKPNPGADWSGPECESVSGTLLGSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILV 585 (876)
T ss_pred ccccccCCcccccccccccccCcccCCCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHH
Confidence 0 00 1223444444445666777777653 23456777899999999
Q ss_pred HHHHHHHHhhcCCCCCCCcccccccccccccccCC-CCccccccccccCCCccc-HHHHHHHHHHHHHHhhhhH
Q 020061 231 VWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDA-APWIRVPWPFQWGAPSFD-AGEAFAMMMASFVALVEST 302 (331)
Q Consensus 231 G~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~-a~w~~~P~~~~fg~P~f~-~~~i~~~~~~~iv~~~esi 302 (331)
-+.+.+..+... +.+ ..-+.-+...-.. ..|+-.|.- ..|-++ ..++++.+.+++.-.+|+-
T Consensus 586 ~s~i~~~~~~~~--~~k-----l~vp~~~~~t~~~~rgw~v~~~~---~~P~~~~~~A~ipalll~iLiFmDqq 649 (876)
T KOG1172|consen 586 FSLIDYFGGSVE--TPK-----LPVPSVFPPTWPFDRGWFVPPFG---KNPWWYVFAALIPALLLTILIFMDQQ 649 (876)
T ss_pred HHHHHhhccccC--CCc-----cccCcCCCCCCcccCCeeeCCCC---CCCHHHHHHHHHHHHHHHHHHHhcch
Confidence 999988876311 110 0001111110011 367666521 123222 3455666777777777764
No 22
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=79.08 E-value=72 Score=31.79 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHH
Q 020061 33 PWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISI 112 (331)
Q Consensus 33 p~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai 112 (331)
+|...+-.++=-+++..++--+.-+-+-++.|.++. ++..+..+|++|++-..+|. .++. +.. +
T Consensus 204 s~~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p-----~~~~~~~tGl~s~l~ApfGg-~~~n-------lAa---i 267 (378)
T PF03594_consen 204 SWSALVSLALPLFIVTMASQNLPGIAVLRAAGYQPP-----VNPLITVTGLASLLAAPFGG-HAVN-------LAA---I 267 (378)
T ss_pred cHHHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCC-----chHHHHHHHHHHHHHhhhch-hhhH-------HHH---H
Confidence 344555555555544333323333555566677554 36777889999999998843 2221 111 2
Q ss_pred HhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh-hHHhHhhhcCcchHHHHHHHHhhhhhhhhhccch---
Q 020061 113 ILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG-LWRNVTRFLSPLSVVPLISLVGFGLYEFGFPGVA--- 188 (331)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg-~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~~~--- 188 (331)
+.+. + .++|-|+....+| -+-+.+|++++++|+.+ ..-.+...+|+..+.. +-|+.|.+.-.++..
T Consensus 268 taAI-c--~g~eah~dp~rRy----~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~---lAGLALlg~l~~sl~~A~ 337 (378)
T PF03594_consen 268 TAAI-C--AGPEAHPDPSRRY----IAAVAAGVFYLLFGLFAAALVALFAALPPALIAA---LAGLALLGTLGGSLQTAF 337 (378)
T ss_pred HHHH-H--cCCccCCCcccch----HHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 1111 1 1122221111233 24568899999999853 2445667778766543 345545444332221
Q ss_pred ---hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHH
Q 020061 189 ---KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAH 236 (331)
Q Consensus 189 ---~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~ 236 (331)
++-.-+++++++. ..|+ .++...+-++|+++|.+++.
T Consensus 338 ~~~~~r~aAlvtFlvt------aSGi-----sl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 338 SDEKYREAALVTFLVT------ASGI-----SLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred cCcchhHHHHHHHHHH------HcCC-----CcccccHHHHHHHHHHHHHh
Confidence 2334455554333 2332 36777899999999998763
No 23
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=76.51 E-value=78 Score=31.79 Aligned_cols=40 Identities=8% Similarity=0.031 Sum_probs=26.9
Q ss_pred hhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceee
Q 020061 60 VPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVM 99 (331)
Q Consensus 60 ~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~ 99 (331)
.+..|++..+........++...++.++-.+ +|.|..+..
T Consensus 63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~ 106 (476)
T PLN00028 63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAF 106 (476)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 4557999888776665566666677777664 577765544
No 24
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=57.69 E-value=1.4e+02 Score=29.68 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 020061 73 VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF 152 (331)
Q Consensus 73 li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~ 152 (331)
=++..+.+-|+++++=+++| ..|.. ++ .-....+. ..+. +. .-+.+++|++.+++++
T Consensus 254 ~~~~~l~~~Gi~~i~aglfG-~~p~t---~~--~~~~~~~~-~tg~---------------~s-r~~~~~~~~~lil~~l 310 (406)
T TIGR03173 254 DLAGGLRADGLGSALGGLFN-TFPYT---SF--SQNVGLVQ-LTGV---------------KS-RYVVAAAGVILVLLGL 310 (406)
T ss_pred hccchHHhccHHHHHHHHhC-CCCCc---ch--hhhHHHHH-HhCC---------------Cc-hHhHHHHHHHHHHHHH
Confidence 35688899999999999986 47743 21 11110111 1110 11 1223778888899998
Q ss_pred hhhHHhHhhhcCcchHHHHHH
Q 020061 153 SGLWRNVTRFLSPLSVVPLIS 173 (331)
Q Consensus 153 tg~~~~l~~~fpP~V~G~vv~ 173 (331)
.+.+..+...+|..|.|.+.+
T Consensus 311 ~~~~~~l~~~iP~~vlgg~~l 331 (406)
T TIGR03173 311 FPKLAALVASIPQPVLGGAGL 331 (406)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 877899999999988887443
No 25
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=56.31 E-value=2.5e+02 Score=29.18 Aligned_cols=83 Identities=13% Similarity=0.262 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 020061 75 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG 154 (331)
Q Consensus 75 ~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg 154 (331)
+.-+++.|++.++=+++ ..+|...+.|= .+ +..+.|.. ..+.. ++++++.++..+
T Consensus 294 n~El~a~G~~N~~~~~f-g~~p~~~s~sr----s~--~~~~~G~~-----------t~~a~-----i~~~~~~l~~~l-- 348 (563)
T TIGR00815 294 NQELVAQGIANIVGSFF-SCYPATGSLSR----TA--VNAKAGCR-----------TQLSG-----VVTAIVVLLVLL-- 348 (563)
T ss_pred cHHHHHhhHHHHHHHHh-CccCCCCcchH----HH--HHHhcCCc-----------chHHH-----HHHHHHHHHHHH--
Confidence 45678899999999997 55777555431 11 11122211 12333 344444433333
Q ss_pred hHHhHhhhcCcchHHHHHHHHhhhhhhh
Q 020061 155 LWRNVTRFLSPLSVVPLISLVGFGLYEF 182 (331)
Q Consensus 155 ~~~~l~~~fpP~V~G~vv~lIGlsl~~~ 182 (331)
+...+..++|-.+.+.++..+++.+...
T Consensus 349 ~~~~~l~~iP~~~la~ili~~~~~l~~~ 376 (563)
T TIGR00815 349 VLTPLFYYIPQAALAAIIISAVRGLIDY 376 (563)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhcccCH
Confidence 2455789999999999999999987654
No 26
>PRK11660 putative transporter; Provisional
Probab=54.11 E-value=2.8e+02 Score=28.96 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 020061 75 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG 154 (331)
Q Consensus 75 ~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg 154 (331)
+.-+++-|++.++=+++ ..+|..-..+ -. ++..+.| -++-..+++.+.++.+.+-+
T Consensus 314 n~EL~a~G~aNi~~~~f-gg~p~~~s~s----rS--a~n~~aG---------------arT~la~iv~a~~~ll~ll~-- 369 (568)
T PRK11660 314 NSELVGQGLGNIVAPFF-GGITATAAIA----RS--AANVRAG---------------ATSPISAVIHALLVLLALLV-- 369 (568)
T ss_pred cHHHHHHhHHHHHHHHh-CcccccchHH----HH--HHHHhcC---------------CCcHHHHHHHHHHHHHHHHH--
Confidence 56788899999999997 5577532211 11 1211222 12223344444444343322
Q ss_pred hHHhHhhhcCcchHHHHHHHHhhhhhhh
Q 020061 155 LWRNVTRFLSPLSVVPLISLVGFGLYEF 182 (331)
Q Consensus 155 ~~~~l~~~fpP~V~G~vv~lIGlsl~~~ 182 (331)
...+.+++|-.+.+.++..+|+.+...
T Consensus 370 -l~~ll~~iP~~vLa~ili~~~~~m~~~ 396 (568)
T PRK11660 370 -LAPLLSYLPLSAMAALLLMVAWNMSEA 396 (568)
T ss_pred -HHHHHHhCcHHHHHHHHHHHHHHhhhH
Confidence 456789999999999999999998754
No 27
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=50.69 E-value=3.1e+02 Score=28.43 Aligned_cols=133 Identities=17% Similarity=0.149 Sum_probs=73.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhCCcccee--eccccch
Q 020061 28 ITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLFGTRLPAV--MGGSYTF 105 (331)
Q Consensus 28 ~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~G~rlPi~--~g~sf~~ 105 (331)
+..+|++...+..++-..+...+.....|++..+.+|.++.....+.++.-+++-+++++...+..|++-- ...+...
T Consensus 214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~ 293 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLL 293 (524)
T ss_pred HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHH
Confidence 33456666555555544444434445568888888899888777777776667777777776655544321 1111111
Q ss_pred HHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHHHHHHH
Q 020061 106 VPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVPLISLV 175 (331)
Q Consensus 106 l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~vv~lI 175 (331)
.+.+..... . . .....+..++++.|......-. ..--.+.+..|+.+.|=+..+.
T Consensus 294 ~a~~~~~la-l--~-----------~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~ 348 (524)
T PF05977_consen 294 FALALLLLA-L--S-----------PSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIY 348 (524)
T ss_pred HHHHHHHHh-c--c-----------hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHH
Confidence 111111111 1 0 1233445566666766554432 2345567888888877776543
No 28
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=49.04 E-value=99 Score=32.40 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=24.0
Q ss_pred HHhHhhhcCcchHHHHHHHHhhhhhhh
Q 020061 156 WRNVTRFLSPLSVVPLISLVGFGLYEF 182 (331)
Q Consensus 156 ~~~l~~~fpP~V~G~vv~lIGlsl~~~ 182 (331)
...+..++|-.+.+.+++.+|..++..
T Consensus 339 ~~~~~~~IP~a~Laavli~v~~~l~~~ 365 (554)
T COG0659 339 LAPLVSYIPLAALAAVLILVGWGLLDW 365 (554)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhccH
Confidence 577889999999999999999988864
No 29
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.63 E-value=2e+02 Score=28.66 Aligned_cols=134 Identities=20% Similarity=0.235 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Q 020061 75 QTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFSG 154 (331)
Q Consensus 75 ~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~tg 154 (331)
+-.+-.+|+.|++..-+|.- ..-+.. +..+. +.++ |-|.....+| -+.+++|+++++.|+.+
T Consensus 256 ~pl~~~TGl~sll~ApfG~~--------t~nLaA---ItAAi-c~gp--daHpD~~rry----~Aa~~agi~ylv~GlF~ 317 (402)
T COG3135 256 SPLIVATGLASLLSAPFGGH--------TVNLAA---ITAAI-CTGP--DAHPDPARRY----TAALVAGIFYLLAGLFG 317 (402)
T ss_pred chHHHHhHHHHHHhcccccc--------eecHHH---HHHHH-hcCC--CCCCChHHHH----HHHHHHHHHHHHHHHHH
Confidence 45667789999998877431 111222 21111 2222 2221112333 24467788888888743
Q ss_pred -hHHhHhhhcCcchHHHHHHHHhhhhhhhhh---ccchh---hhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHH
Q 020061 155 -LWRNVTRFLSPLSVVPLISLVGFGLYEFGF---PGVAK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFS 227 (331)
Q Consensus 155 -~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~---~~~~~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLig 227 (331)
-+-.+...+|-.. +-++-|+-|...-. .+.-+ .-.-+.+++++ -..|+ .++...+-++|
T Consensus 318 ~~~~~l~~alP~~l---i~~lAGLALlg~~~~~l~~A~~~~~~R~aAlvtF~V------TaSG~-----tl~GIgaafWG 383 (402)
T COG3135 318 GALVGLMAALPASL---IAALAGLALLGTLGNSLQAALKDEREREAALVTFLV------TASGL-----TLFGIGAAFWG 383 (402)
T ss_pred HHHHHHHHHCcHHH---HHHHHHHHHHHHHHHHHHHHhcCcccchhhhhheee------hhccc-----eeecccHHHHH
Confidence 1333444555432 33444443333222 11111 11233333222 23332 36677899999
Q ss_pred HHHHHHHHHHHhh
Q 020061 228 VVIVWIYAHLLTV 240 (331)
Q Consensus 228 i~vG~i~a~~~g~ 240 (331)
+++||++.+..+.
T Consensus 384 LvaG~~~~~L~~~ 396 (402)
T COG3135 384 LVAGLLVLALLNL 396 (402)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999888754
No 30
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=39.98 E-value=1.8e+02 Score=28.60 Aligned_cols=83 Identities=25% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHH
Q 020061 72 KVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLG 151 (331)
Q Consensus 72 ~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg 151 (331)
.-+.+++.+-|++|++=+++|. .|..-- .-..-.+. ..+. .+ .=..+.++++.++++
T Consensus 267 ~~~~r~l~~dg~~~~l~gl~G~-~~~t~~-----~en~g~i~-~t~v------------~S----r~~~~~a~~~~i~~~ 323 (389)
T PF00860_consen 267 PRIRRGLLADGLGTILAGLFGT-SPTTTY-----SENAGGIA-ATGV------------AS----RRVGLTAGVILILFG 323 (389)
T ss_dssp CCHHHHHHHHHHHHHHHHHHT----EEE------HHHHHHHH-HHTB------------------HHHHHHHHHHHHHHT
T ss_pred hhhcccceeeeeeeeechhhcC-CCCccc-----cccchhhh-hhcc------------cc----ceeeeHHHHHHHHHh
Confidence 4478999999999999999987 665322 21111111 1110 00 124567888899999
Q ss_pred hhhhHHhHhhhcCcch-HHHHHHHHhh
Q 020061 152 FSGLWRNVTRFLSPLS-VVPLISLVGF 177 (331)
Q Consensus 152 ~tg~~~~l~~~fpP~V-~G~vv~lIGl 177 (331)
+.+.+..+...+|..| .|+.+.+.|.
T Consensus 324 ~~p~~~~l~~~IP~~v~gg~~lv~~g~ 350 (389)
T PF00860_consen 324 LSPKFAPLFASIPSPVIGGPLLVLFGM 350 (389)
T ss_dssp --HHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 9888899999999888 5666666655
No 31
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=35.30 E-value=2.2e+02 Score=28.85 Aligned_cols=79 Identities=10% Similarity=0.031 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHh
Q 020061 73 VIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGF 152 (331)
Q Consensus 73 li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~ 152 (331)
-+++.+.+-|++|++-+.+| ..|..-=+.. ...++++ +.. - .=.+..+|++.+++|+
T Consensus 276 ~l~rgi~~dGi~s~laglfg-~~p~tt~sqN---vGvi~~T---gV~-------------S---R~v~~~aa~ilillgl 332 (433)
T PRK11412 276 RYRRSFVATGFMTLITVPLA-VIPFSPFVSS---IGLLTQT---GDY-------------R---RRSFIYGSVMCLLVAL 332 (433)
T ss_pred ccccchhhccHHHHHHHhcC-CCCCCchhhh---hhhhhhc---CCc-------------h---hHHHHHHHHHHHHHHH
Confidence 45778888888888888875 5554111111 1111111 100 0 1235677888999999
Q ss_pred hhhHHhHhhhcCcchHHHHHHH
Q 020061 153 SGLWRNVTRFLSPLSVVPLISL 174 (331)
Q Consensus 153 tg~~~~l~~~fpP~V~G~vv~l 174 (331)
.+-+..+..-+|..|.|-+.+.
T Consensus 333 ~PK~~alia~IP~pVlGg~~~~ 354 (433)
T PRK11412 333 IPALTRLFCSIPLPVSSAVMLV 354 (433)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 8888889999998887765543
No 32
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=34.48 E-value=1.3e+02 Score=27.48 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=41.8
Q ss_pred hHHhHhh-hcCcchHHHHHHHHhhhhhhhhhccch--h---hhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHH
Q 020061 155 LWRNVTR-FLSPLSVVPLISLVGFGLYEFGFPGVA--K---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSV 228 (331)
Q Consensus 155 ~~~~l~~-~fpP~V~G~vv~lIGlsl~~~~~~~~~--~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi 228 (331)
+.+|.++ ++.|+++.+.+...-+.+...-.++.. + ++.++-.++.+.+=+.+..+.+ |+ +..+++.++
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~~i~y~~Y~~gg~~l~~lLgPatVALAvPLY~~~~~l----~~--~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLTGIPYEDYMQGGDILSFLLGPATVALAVPLYRQRRLL----KK--NWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHH
Confidence 4566655 567888888777776666555444332 2 3445555555544443333221 11 112566777
Q ss_pred HHHHHHHHHH
Q 020061 229 VIVWIYAHLL 238 (331)
Q Consensus 229 ~vG~i~a~~~ 238 (331)
.+|.+++...
T Consensus 85 ~~g~~~~~~~ 94 (215)
T PF04172_consen 85 LVGSLVSIFS 94 (215)
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 33
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=34.36 E-value=1.3e+02 Score=28.70 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=43.3
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhh---hHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 020061 28 ITSPPPWPEAILLGFQHYIVMLGTTV---LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (331)
Q Consensus 28 ~~d~pp~~~~l~lglQh~l~~~~~~i---~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g 100 (331)
++++.+... +.+.+++..++..+ ..|..+.+..|.++.+.....+...+...++..+-.. +|.|..++.+
T Consensus 11 ~~~~~~~~~---l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (399)
T PRK05122 11 LRLTLRIVS---IVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFG 87 (399)
T ss_pred CcccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHH
Confidence 344444333 44444555444333 3355556667999998888888888888777777765 5666665544
No 34
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=32.06 E-value=5.7e+02 Score=26.12 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 020061 221 RFAVIFSVVIVWIYAHLLTVG 241 (331)
Q Consensus 221 ~~aiLigi~vG~i~a~~~g~~ 241 (331)
.+.-.+|..++..+..++|..
T Consensus 229 ~~~~~~G~~l~~~~~~ilGa~ 249 (442)
T COG1457 229 FLAAVLGFFLGTSFMMILGAA 249 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 347778888888888888763
No 35
>PRK03699 putative transporter; Provisional
Probab=31.93 E-value=2.6e+02 Score=26.82 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=25.2
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 020061 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (331)
Q Consensus 55 vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~ 91 (331)
.|..+.+..|+|+.+...+.+...+...++.++-.++
T Consensus 228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l 264 (394)
T PRK03699 228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFI 264 (394)
T ss_pred HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5777767779998877766665556666666665553
No 36
>PRK11663 regulatory protein UhpC; Provisional
Probab=31.87 E-value=5e+02 Score=25.38 Aligned_cols=43 Identities=12% Similarity=0.250 Sum_probs=30.9
Q ss_pred hhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccc
Q 020061 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLP 96 (331)
Q Consensus 53 i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlP 96 (331)
...|.+..+ +|+++++...+.+...+..+++.++-.+ +|.|..
T Consensus 44 ~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~ 90 (434)
T PRK11663 44 AAMPEMLAD-LGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF 90 (434)
T ss_pred HhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh
Confidence 445666654 7999998888888888888888777765 455543
No 37
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=31.29 E-value=3.2e+02 Score=28.27 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCccceeeccccchHHH--HHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHH
Q 020061 71 AKVIQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPS--TISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQI 148 (331)
Q Consensus 71 ~~li~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~--~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~i 148 (331)
.+.+++.+..=|+++++-.++|.+- |.+ .+.-- .++++ +.+ +=+. +-+++.+++
T Consensus 304 ~~~inRgi~~eGig~lL~gl~G~gt----G~T-t~~ENigll~vT-KVg--------------SRrv----vQ~aa~fmI 359 (510)
T KOG1292|consen 304 PSVLNRGIGWEGIGSLLAGLFGTGT----GST-TSVENIGLLGVT-KVG--------------SRRV----VQIAAGFMI 359 (510)
T ss_pred hhhhhhhhhhhhHHHHHHHhhCCCc----cce-eeccceeeEeee-eee--------------eeee----hhhhHHHHH
Confidence 4789999999999999999876532 111 01100 00010 000 0111 346788889
Q ss_pred HHHhhhhHHhHhhhcCcchHHHHHHH-------HhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHcccch---hccccc
Q 020061 149 VLGFSGLWRNVTRFLSPLSVVPLISL-------VGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVI---KRGKNI 218 (331)
Q Consensus 149 llg~tg~~~~l~~~fpP~V~G~vv~l-------IGlsl~~~~~~~~~~~~~l~~~~l~~iv~~~~~~~~~~---~~~~~~ 218 (331)
++|..|-++.+..-+|-.+.|.+.+. .|+|.....-.|-.-|..+--+.+..-+.+-+|.+... +...+.
T Consensus 360 ~~~i~gKFgA~fAsIP~piv~~l~c~~~~mv~avgLSnLQf~dlns~RNl~IlG~Sif~gLsip~yF~~~~~~v~Tg~~~ 439 (510)
T KOG1292|consen 360 FFGIFGKFGAFFASIPDPIVGGLLCILFGMVGAVGLSNLQFVDLNSSRNLFILGFSIFLGLSIPQYFEQYPGPVHTGNGW 439 (510)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhhheeeccccccchhhhhHHHHHhccHHHHHHhCCCccccCcHH
Confidence 99998888888999996666555442 23333333222222343332222222222233443322 111111
Q ss_pred hh-hHHHH--HHHHHHHHHHHHHhhcCCCCCC-Ccccccccccccc---cccCCCCcccccc
Q 020061 219 FD-RFAVI--FSVVIVWIYAHLLTVGGAYNDA-APKTQASCRTDRA---GLIDAAPWIRVPW 273 (331)
Q Consensus 219 ~r-~~aiL--igi~vG~i~a~~~g~~g~~~~~-~~~~~~~~~~d~~---~~v~~a~w~~~P~ 273 (331)
+. .+.++ .-+.||-++|++++.+ .|.. +++++..++-|+. ....++.-.++|.
T Consensus 440 ~d~ilnvll~~~m~Vggi~A~~LDnt--~~gatr~~RG~~~w~~~~~~~~d~~~~e~Y~lP~ 499 (510)
T KOG1292|consen 440 FDDILNVLLSSRMLVGGILAFILDNT--LPGATREQRGLRWWDKFETFNGDVRNEEFYSLPF 499 (510)
T ss_pred HHHHHHHHhhHHHHHHHHHhhhcccc--CCCCChHhcCCcchhccccccCCccccccccCcH
Confidence 21 12344 5688999999999864 3432 2334444433322 1133444566664
No 38
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=31.25 E-value=3.2e+02 Score=25.42 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=37.1
Q ss_pred cCcchHHHHHHHHhhhhhhhhhccc--hh---hhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHH
Q 020061 163 LSPLSVVPLISLVGFGLYEFGFPGV--AK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHL 237 (331)
Q Consensus 163 fpP~V~G~vv~lIGlsl~~~~~~~~--~~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~ 237 (331)
+.|+++.+.+...-+.+...-.+.. ++ ++.++-.++.+.+=+.+..+.+ |+ +..++++|+.+|.+++..
T Consensus 36 lnPll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~~l----k~--~~~~Il~~~~vG~~~~i~ 109 (232)
T PRK04288 36 FTPLFVAMVLGIAFLKLTGISYEEYNIGGDIISFFLEPATIAFAIPLYKKRDVL----KK--YWWQILGGIVVGSVCSVL 109 (232)
T ss_pred hhHHHHHHHHHHHHHHHhCCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHH----HH--HHHHHHHHHHHHHHHHHH
Confidence 5777777776665554444433322 22 4456666666555553333221 11 123677777777776654
Q ss_pred H
Q 020061 238 L 238 (331)
Q Consensus 238 ~ 238 (331)
.
T Consensus 110 s 110 (232)
T PRK04288 110 I 110 (232)
T ss_pred H
Confidence 3
No 39
>COG0701 Predicted permeases [General function prediction only]
Probab=31.02 E-value=3.8e+02 Score=26.08 Aligned_cols=101 Identities=17% Similarity=0.271 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcC--cchHHHHHH-HHhh-------hhhhhhhc----cchhhhhhHHHH
Q 020061 132 TMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLS--PLSVVPLIS-LVGF-------GLYEFGFP----GVAKCVEIGLPQ 197 (331)
Q Consensus 132 ~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fp--P~V~G~vv~-lIGl-------sl~~~~~~----~~~~~~~l~~~~ 197 (331)
.+..+.=+++++|.++..+. -++++|++| +-..|..+. ++|+ +.+|.... ++..++.++++.
T Consensus 26 a~~~l~~g~~l~s~i~~~i~----~~~l~~~l~~~~k~~~~~~aal~G~~~p~CsC~~vPl~~~~~~~Gvp~~~a~sFL~ 101 (317)
T COG0701 26 ALPFLLLGFFLSSLIQVFIP----EEKLLRYLPGKNKFLGLLLAALLGLLLPVCSCGAVPLARGFLEKGVPLGPAVAFLV 101 (317)
T ss_pred HHHHHHHHHHHHHHHHHHcC----HHHHHHHcccccchHHhHHHHHHcccchhhhcccHHHHHHHHHcCCCCCceehhhh
Confidence 56778889999999988776 589999999 555554433 4444 22222211 111222222222
Q ss_pred -------HHHHHHHHHHcccchhccccchhhH-HHHHHHHHHHHHHHHHh
Q 020061 198 -------LVIIVFISQYLPHVIKRGKNIFDRF-AVIFSVVIVWIYAHLLT 239 (331)
Q Consensus 198 -------l~~iv~~~~~~~~~~~~~~~~~r~~-aiLigi~vG~i~a~~~g 239 (331)
..+......++.+. +-...|.. ++++++++|+++.....
T Consensus 102 aaP~iNp~~i~~t~~~fg~~~---~~~~~r~v~~li~avliG~i~~~~~~ 148 (317)
T COG0701 102 AAPLINPIAITSTYAAFGSQW---GATLIRVVAGLIIAVLIGLIVSKLFK 148 (317)
T ss_pred cCCccCHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222222333111 01233333 78899999999888773
No 40
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=30.65 E-value=3.1e+02 Score=25.49 Aligned_cols=78 Identities=17% Similarity=0.285 Sum_probs=39.5
Q ss_pred hHHhHh-hhcCcchHHHHHHHHhhhhhhhhhccc--hhhh---hhHHHHHHHHHHHHHHcccchhccccchhhH--HHHH
Q 020061 155 LWRNVT-RFLSPLSVVPLISLVGFGLYEFGFPGV--AKCV---EIGLPQLVIIVFISQYLPHVIKRGKNIFDRF--AVIF 226 (331)
Q Consensus 155 ~~~~l~-~~fpP~V~G~vv~lIGlsl~~~~~~~~--~~~~---~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~--aiLi 226 (331)
+.+|-+ .++-|+++++++...=+.+...--++. +++| .++-.++.+.+=+..-.+ .+|+. +++.
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYkq~~--------~ik~~w~~I~~ 95 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLLGPATVALAVPLYKQRH--------LIKRHWKPILA 95 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHH
Confidence 455555 333477777666544333333333322 2333 445455555444422221 23332 7888
Q ss_pred HHHHHHHHHHHHhh
Q 020061 227 SVVIVWIYAHLLTV 240 (331)
Q Consensus 227 gi~vG~i~a~~~g~ 240 (331)
|+++|..++...+.
T Consensus 96 g~~vGs~~ai~s~~ 109 (230)
T COG1346 96 GVLVGSVVAIISGV 109 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887765544
No 41
>COG1289 Predicted membrane protein [Function unknown]
Probab=30.20 E-value=3.1e+02 Score=29.22 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=38.6
Q ss_pred hhhcCcchHH-HHHHHHhhhhhhhhhccchhhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHH
Q 020061 160 TRFLSPLSVV-PLISLVGFGLYEFGFPGVAKCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLL 238 (331)
Q Consensus 160 ~~~fpP~V~G-~vv~lIGlsl~~~~~~~~~~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~ 238 (331)
..+.+|.+.+ ..+++++.-++..++......+.....++.+.+.+++...+-. .-...|....++|.++|+.+++..
T Consensus 421 l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~~l~~~~~~--~~~~~r~~d~~iG~lIa~~~a~~v 498 (674)
T COG1289 421 LLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVGLLGSNGP--DYDLPRFLDTLLGSLIALALAFLV 498 (674)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHcccchh--hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777 4444444444444443222122222223333333333332210 113566778889999999877644
Q ss_pred h
Q 020061 239 T 239 (331)
Q Consensus 239 g 239 (331)
.
T Consensus 499 ~ 499 (674)
T COG1289 499 W 499 (674)
T ss_pred H
Confidence 3
No 42
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=30.17 E-value=4.8e+02 Score=25.74 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhh-----------hhHHhHhhhcCcchHHHHHHHHhhhhhhhhh---ccch--------hhhhhHHH
Q 020061 139 SLIVASTLQIVLGFS-----------GLWRNVTRFLSPLSVVPLISLVGFGLYEFGF---PGVA--------KCVEIGLP 196 (331)
Q Consensus 139 a~ivaGlv~illg~t-----------g~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~---~~~~--------~~~~l~~~ 196 (331)
+++++++++.+.|.- ...+.++++++|...=..-..+=+.++..+. .+.+ -.-+++.+
T Consensus 41 gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGal 120 (349)
T COG3949 41 GIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGAL 120 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHH
Confidence 356666666666651 1245677777775532222222222222221 1111 13356655
Q ss_pred HHHHHHHHHHHcccchhccccchhhHHHHHHHHH
Q 020061 197 QLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVI 230 (331)
Q Consensus 197 ~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~v 230 (331)
.+..++....+++++ +++.+.-+++.-+++
T Consensus 121 i~i~~v~i~lfl~~v----egi~tvn~iI~P~LI 150 (349)
T COG3949 121 IIILLVLILLFLGRV----EGIITVNGIITPFLI 150 (349)
T ss_pred HHHHHHHHHHHHhcc----cceeeeheeHHHHHH
Confidence 555555555577655 455555544444433
No 43
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=29.82 E-value=2.1e+02 Score=28.64 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 020061 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (331)
Q Consensus 74 i~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~t 153 (331)
++..+++-|++|++=+++|. .|.-- |.-. ..+.... +...-. ....+|++.+++++.
T Consensus 271 ~~r~l~adGl~~i~aglfG~-~p~t~-----~sen-~g~~~~T---------------~~~sr~-~~~~~a~~~i~~~l~ 327 (415)
T TIGR00801 271 LHRGVLADGLATLLAGLFGG-FPNTT-----FAQN-IGVIALT---------------RVASRW-VIVGAAVILIALGFF 327 (415)
T ss_pred ccchHHHhhHHHHHHHhcCC-CCCcc-----hhhh-heeeeec---------------CCCchH-HHHHHHHHHHHHHHH
Confidence 56788888888888888764 66421 1110 0010001 111112 567888899999998
Q ss_pred hhHHhHhhhcCcchHHHHHH
Q 020061 154 GLWRNVTRFLSPLSVVPLIS 173 (331)
Q Consensus 154 g~~~~l~~~fpP~V~G~vv~ 173 (331)
+.+..+...+|..|.|.+.+
T Consensus 328 pk~~~l~~~iP~~vlgg~~l 347 (415)
T TIGR00801 328 PKIAALITSIPSPVLGGASI 347 (415)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 77888999999888776655
No 44
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=29.12 E-value=4.2e+02 Score=25.66 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhC
Q 020061 282 FDAGEAFAMMMASFVALVESTGAFFAVARYAS 313 (331)
Q Consensus 282 f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~ 313 (331)
..|..+++=+..++-..+..-|.-..+++..+
T Consensus 160 vG~a~iLPQlLAaLG~vF~~AGVG~vIa~lv~ 191 (308)
T PF06166_consen 160 VGWAAILPQLLAALGAVFTAAGVGDVIASLVS 191 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence 45777888888888888888888888888776
No 45
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=28.99 E-value=3.2e+02 Score=26.31 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=31.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 020061 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF 91 (331)
Q Consensus 31 ~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~ 91 (331)
+..|...+...+..... .......|..+.+ .|++.++...+.....++.-+++++..+.
T Consensus 205 ~~~~~l~~~~~~~~~~~-~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 205 PRAWTLGVYFGLINGGY-ASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAM 263 (393)
T ss_pred HhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443222 2222234655555 68888776666655555556666666554
No 46
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=28.12 E-value=4.7e+02 Score=25.69 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=32.7
Q ss_pred hhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 020061 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (331)
Q Consensus 53 i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g 100 (331)
...|.+. +. |+++.+.....+...+...++.++-.. +|.|..++.+
T Consensus 50 ~~~p~l~-~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~ 99 (452)
T PRK11273 50 LAMPYLV-EQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 99 (452)
T ss_pred HhhHHHH-Hc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHH
Confidence 3456655 44 999998888888888888888887765 5777654444
No 47
>COG3817 Predicted membrane protein [Function unknown]
Probab=28.09 E-value=5e+02 Score=24.77 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=63.5
Q ss_pred hhcCcchHHHHHHHHhhhhhhhhhccch-----------------hhh-hh-HHHHHHHHHHHHHHcccchhccccchhh
Q 020061 161 RFLSPLSVVPLISLVGFGLYEFGFPGVA-----------------KCV-EI-GLPQLVIIVFISQYLPHVIKRGKNIFDR 221 (331)
Q Consensus 161 ~~fpP~V~G~vv~lIGlsl~~~~~~~~~-----------------~~~-~l-~~~~l~~iv~~~~~~~~~~~~~~~~~r~ 221 (331)
.+.|+.|+|.++.++.+ +...+.-..| +|+ .+ ++..-++.++.++..+.+++-..+.--.
T Consensus 50 ~~lp~~viG~ivillAl-iagf~~v~~G~~~~~~~e~re~~A~rlgnrlfiPal~ip~~tlig~~lf~~~s~~~pknatl 128 (313)
T COG3817 50 DRLPNIVIGLIVILLAL-IAGFGQVKIGALPELSPEEREKSANRLGNRLFIPALLIPVLTLIGSLLFPDLSFFDPKNATL 128 (313)
T ss_pred ccccchhHhHHHHHHHH-HHhcCCcccCCCCCCCHHHHHHHHHHhcCEeehHHHHHHHHHHHHHHHhccccccCCcchhH
Confidence 68899999999988766 2222211111 122 11 1111112333444555553200011234
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCcccccccccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhh
Q 020061 222 FAVIFSVVIVWIYAHLLTVGGAYNDAAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVES 301 (331)
Q Consensus 222 ~aiLigi~vG~i~a~~~g~~g~~~~~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~es 301 (331)
.++-+|.+++.+++..+... ++ ++.++++ -+.+ -+.+|..+++=+..++-..+.+
T Consensus 129 ~al~i~~i~a~vla~~mt~~---~p-------------~~~~~E~-----~rl~----d~v~wa~iLPQ~LaaLG~vFa~ 183 (313)
T COG3817 129 MALGIAAIVATVLACVMTKQ---TP-------------KAAVQEA-----RRLM----DQVSWAAILPQMLAALGAVFAS 183 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcc---Ch-------------hhHHHHH-----HHHH----HHhhHHHHHHHHHHHHHHHHHh
Confidence 57777888887766655321 00 0101111 0111 1456777777766666666666
Q ss_pred HHHHHHHHHHhC
Q 020061 302 TGAFFAVARYAS 313 (331)
Q Consensus 302 iG~~~a~~~~~~ 313 (331)
-|.-.++++...
T Consensus 184 aGvG~~ia~L~~ 195 (313)
T COG3817 184 AGVGDVIAHLIS 195 (313)
T ss_pred cchhHHHHHHHH
Confidence 676666666654
No 48
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=26.68 E-value=6.6e+02 Score=25.15 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=20.5
Q ss_pred cccHHHHHHHHHHHHHHhhhhHHHHHH-HHHHh
Q 020061 281 SFDAGEAFAMMMASFVALVESTGAFFA-VARYA 312 (331)
Q Consensus 281 ~f~~~~i~~~~~~~iv~~~esiG~~~a-~~~~~ 312 (331)
.|+--....+++.++-+.+|...++.+ +.|+.
T Consensus 252 ~~~~~~~~~viIg~LGAimDvaisIaSsi~El~ 284 (385)
T COG5438 252 NFSGLFLAGVIIGSLGAIMDVAISIASSINELH 284 (385)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344445556677788888887777765 44444
No 49
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.51 E-value=3.1e+02 Score=24.80 Aligned_cols=45 Identities=16% Similarity=0.006 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHH------hHhhhcCcchHHHHHHHHhhhh
Q 020061 135 AIQGSLIVASTLQIVLGFSGLWR------NVTRFLSPLSVVPLISLVGFGL 179 (331)
Q Consensus 135 ~~~Ga~ivaGlv~illg~tg~~~------~l~~~fpP~V~G~vv~lIGlsl 179 (331)
.+...+++.|.+++++|..|+++ |+...=.+-..|+.++++|.-+
T Consensus 7 iI~~vLLliG~~f~ligaIGLlRfPD~YtRLHAATKa~TLGv~LILlgv~l 57 (197)
T PRK12585 7 IIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISNTFGVSLLLFATVG 57 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHhhccccchhhhHHHHHHHHHH
Confidence 34555788888888888877643 3444444566777777776543
No 50
>PRK10739 putative antibiotic transporter; Provisional
Probab=24.76 E-value=2.7e+02 Score=25.05 Aligned_cols=30 Identities=10% Similarity=0.095 Sum_probs=18.9
Q ss_pred HHhHhhhcCcc-------hHHHHHHHHhhhhhhhhhc
Q 020061 156 WRNVTRFLSPL-------SVVPLISLVGFGLYEFGFP 185 (331)
Q Consensus 156 ~~~l~~~fpP~-------V~G~vv~lIGlsl~~~~~~ 185 (331)
-+++.|++.+. +.|.+++.|+++.+-.|++
T Consensus 156 s~~i~~~LG~~g~~vi~RimGllLaaiavq~i~~Gi~ 192 (197)
T PRK10739 156 SSLFLRLLGEKGVNALERLMGLILVMLSTQMFLDGIR 192 (197)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777764 3566666666666555544
No 51
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=23.69 E-value=5.8e+02 Score=23.49 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=21.3
Q ss_pred hHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 54 LIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 54 ~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
..|....+..|.++++...+.....+...++..+-.+
T Consensus 241 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (394)
T TIGR00883 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA 277 (394)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466665667888776665555444555555544443
No 52
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=23.33 E-value=3.3e+02 Score=24.85 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=23.9
Q ss_pred hhhhHHHHhhhccCCC-hHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 51 TTVLIPTSLVPQMGGG-NEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 51 ~~i~vP~ii~~a~gl~-~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
.....|..+.+..|.+ ..+...+.....+...++.++-..
T Consensus 225 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (352)
T PF07690_consen 225 FSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGR 265 (352)
T ss_dssp HHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344577666677888 666665555555555555555544
No 53
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=23.16 E-value=5e+02 Score=23.98 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=37.2
Q ss_pred HHhHhh-hcCcchHHHHHHHHhhhhhhhhhccc--hh---hhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHH
Q 020061 156 WRNVTR-FLSPLSVVPLISLVGFGLYEFGFPGV--AK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVV 229 (331)
Q Consensus 156 ~~~l~~-~fpP~V~G~vv~lIGlsl~~~~~~~~--~~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~ 229 (331)
.+|.++ ++.|+++.+.+...-+.+...--+.. ++ ++.++-.++.+.+=+.+..+.+ |+. ..+++.++.
T Consensus 22 ~~r~~~~~lnPvl~~~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~~~~~l----k~~--~~~Il~~~~ 95 (226)
T TIGR00659 22 YQRFKRPYLNPLLLTPLVLVGILLLVGIPYESYMLGGGVINDLLGPAVVALAIPLYKQLPQI----KKY--WKEIILNVA 95 (226)
T ss_pred HHHcCCccccHHHHHHHHHHHHHHHhCCCHHHHHHhhHHHHHhhHHHHHHHHHHHHHhHHHH----HHH--HHHHHHHHH
Confidence 344433 45677777776655444433332222 22 3445555555555443333221 111 135677777
Q ss_pred HHHHHHHHH
Q 020061 230 IVWIYAHLL 238 (331)
Q Consensus 230 vG~i~a~~~ 238 (331)
+|.+++...
T Consensus 96 ~G~~~~~~s 104 (226)
T TIGR00659 96 VGSVIAIIS 104 (226)
T ss_pred HHHHHHHHH
Confidence 776665433
No 54
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=23.01 E-value=3.8e+02 Score=26.89 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=34.1
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 31 PPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 31 ~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
+-.|..++..|+|.+.+-....-. |-++.+. |+|+++...+ -++.++.|.-
T Consensus 208 ~~aW~vtLfmGlqS~~~Y~~~~WL-P~ili~~-G~sa~~aG~l-------lsl~~l~~~~ 258 (395)
T COG2807 208 PLAWQVTLFMGLQSLLYYIVIGWL-PAILIDR-GLSAAEAGSL-------LSLMQLAQLP 258 (395)
T ss_pred chhHHHHHHHHhhHHHHHHHHHHH-HHHHHHc-CCCHHHhhhH-------HHHHHHHHHH
Confidence 338999999999999876544333 6666554 8998764433 3455666654
No 55
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=22.89 E-value=87 Score=32.34 Aligned_cols=84 Identities=11% Similarity=0.161 Sum_probs=53.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHH----HHHHHHHHHHHHHHHHHHHh----CC-cccee
Q 020061 28 ITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKA----KVIQTLLFVAGLNTLLQSLF----GT-RLPAV 98 (331)
Q Consensus 28 ~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~----~li~a~l~~~Gi~TllQ~~~----G~-rlPi~ 98 (331)
.|++++|+...+.++-.++.+....+..|-.-.-..++|++.+. ..+.+.=+++.+..++.+++ ++ |.|++
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli 106 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI 106 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH
Confidence 34577999999999999999988888776655444455543332 24444445555556666553 22 88998
Q ss_pred eccccchHHHHHH
Q 020061 99 MGGSYTFVPSTIS 111 (331)
Q Consensus 99 ~g~sf~~l~~~~a 111 (331)
.|...+.++-.+-
T Consensus 107 ~s~ii~~~g~llY 119 (488)
T KOG2325|consen 107 VSFLIAIIGNLLY 119 (488)
T ss_pred HHHHHHHHHHHHH
Confidence 8866555554443
No 56
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.30 E-value=4.2e+02 Score=22.81 Aligned_cols=48 Identities=15% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH------hHhhhcCcchHHHHHHHHhhhhh
Q 020061 133 MRAIQGSLIVASTLQIVLGFSGLWR------NVTRFLSPLSVVPLISLVGFGLY 180 (331)
Q Consensus 133 ~~~~~Ga~ivaGlv~illg~tg~~~------~l~~~fpP~V~G~vv~lIGlsl~ 180 (331)
+..+...+++.|.+++++|..|++| |+...=.+...|..+.++|..+.
T Consensus 8 ~~il~~ill~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~ 61 (145)
T PRK12586 8 FSLIAAIMILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIY 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHH
Confidence 4445566788899988888877643 34444446778888888887664
No 57
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=22.05 E-value=2.1e+02 Score=26.75 Aligned_cols=57 Identities=14% Similarity=0.066 Sum_probs=26.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHH
Q 020061 30 SPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLL 87 (331)
Q Consensus 30 d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~Tll 87 (331)
+|.-+...+..++.+... +......|....+..|.++++...+.....+..-++.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 261 (385)
T TIGR00710 205 SKMFWGYALIYGASFGGF-FAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFL 261 (385)
T ss_pred CchhHHHHHHHHHHHHHH-HHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443322 222334477666667888876554443333333333333
No 58
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=21.46 E-value=5.6e+02 Score=22.94 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=21.6
Q ss_pred hHHhHhhhcCcchHHHHHHHHhhhhhhhhhcc
Q 020061 155 LWRNVTRFLSPLSVVPLISLVGFGLYEFGFPG 186 (331)
Q Consensus 155 ~~~~l~~~fpP~V~G~vv~lIGlsl~~~~~~~ 186 (331)
+..+.+.-+.-.+++.+.++.|++++.+=..|
T Consensus 53 ~v~~~~~~lnGp~iaaiftv~GFs~FGKn~~N 84 (183)
T PF07613_consen 53 LVLLVKGKLNGPTIAAIFTVVGFSAFGKNIKN 84 (183)
T ss_pred HHHHHCCCCCcHHHHHHHHHHHHHHcCCcHHH
Confidence 34555555666777778888888877665444
No 59
>PRK10711 hypothetical protein; Provisional
Probab=20.97 E-value=2.8e+02 Score=25.74 Aligned_cols=69 Identities=13% Similarity=0.059 Sum_probs=36.8
Q ss_pred hcCcchHHHHHHHHhhhhhhhhhccc--hh---hhhhHHHHHHHHHHHHHHcccchhccccchhh--HHHHHHHHHHHHH
Q 020061 162 FLSPLSVVPLISLVGFGLYEFGFPGV--AK---CVEIGLPQLVIIVFISQYLPHVIKRGKNIFDR--FAVIFSVVIVWIY 234 (331)
Q Consensus 162 ~fpP~V~G~vv~lIGlsl~~~~~~~~--~~---~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~--~aiLigi~vG~i~ 234 (331)
++.|+++.+++...-+.+...--+.. ++ ++.++-.++.+.+=+.+..+ .+|. .++++|+.+|.++
T Consensus 30 ~l~Pll~s~~~ii~~L~~~~i~Y~~Y~~g~~~l~~lLgPAtVALAvPLY~q~~--------~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 30 LLNPLLVAMVVIIPFLLLTGIPYEHYFKGSEVLNDLLQPAVVALAFPLYEQLH--------QIRARWKSIISICFIGSVV 101 (231)
T ss_pred cccHHHHHHHHHHHHHHHhCCCHHHHHhccHHHHhhhhHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHHHHHHH
Confidence 34677777766655454443333322 22 45566666666554433322 2222 3677777777776
Q ss_pred HHHH
Q 020061 235 AHLL 238 (331)
Q Consensus 235 a~~~ 238 (331)
+...
T Consensus 102 ~i~s 105 (231)
T PRK10711 102 AMVT 105 (231)
T ss_pred HHHH
Confidence 5543
Done!