Query 020061
Match_columns 331
No_of_seqs 101 out of 1045
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:11:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020061.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020061hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 3.4E-44 1.2E-48 355.5 23.2 256 22-331 2-272 (429)
2 1pw4_A Glycerol-3-phosphate tr 51.3 1.4E+02 0.0048 27.0 13.2 39 52-90 272-310 (451)
3 3qe7_A Uracil permease; uracil 48.3 1.9E+02 0.0066 27.7 13.9 76 74-172 263-338 (429)
4 3o7q_A L-fucose-proton symport 30.9 2.9E+02 0.01 24.7 12.1 101 55-170 49-153 (438)
5 3o7q_A L-fucose-proton symport 21.5 4.4E+02 0.015 23.5 12.7 37 54-90 280-317 (438)
6 1pw4_A Glycerol-3-phosphate tr 18.8 3.5E+02 0.012 24.3 8.1 65 34-100 27-98 (451)
7 1bts_A BAND 3 anion transport 9.1 3.2E+02 0.011 15.6 3.2 22 75-97 4-25 (26)
8 2kv5_A FST, putative uncharact 9.0 1E+02 0.0036 18.8 0.8 16 160-175 6-21 (33)
9 2gfp_A EMRD, multidrug resista 8.7 1E+02 0.0036 27.3 1.1 18 56-73 223-240 (375)
10 2gfp_A EMRD, multidrug resista 7.1 1.1E+03 0.038 20.3 11.0 44 56-100 24-71 (375)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=100.00 E-value=3.4e-44 Score=355.53 Aligned_cols=256 Identities=20% Similarity=0.348 Sum_probs=226.3
Q ss_pred CCcccccCCCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeec
Q 020061 22 PSISYCITSPPPWPEAILLGFQHYIVMLGTTVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSLF-GTRLPAVMG 100 (331)
Q Consensus 22 ~~~~y~~~d~pp~~~~l~lglQh~l~~~~~~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~~-G~rlPi~~g 100 (331)
.|+.|++|||||+++++.+|+||+++|+++++++|+++ |+|+ +++++++|++|++|+++ |+|+|+++|
T Consensus 2 ~~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G 70 (429)
T 3qe7_A 2 TRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLG 70 (429)
T ss_dssp --CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEE
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEec
Confidence 35789999999999999999999999999999999998 7887 37999999999999986 899999999
Q ss_pred cccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh--hhH-HhHhhhcCcchHHHHHHHHhh
Q 020061 101 GSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS--GLW-RNVTRFLSPLSVVPLISLVGF 177 (331)
Q Consensus 101 ~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~t--g~~-~~l~~~fpP~V~G~vv~lIGl 177 (331)
+||+|++++.++.+ +++++++|+++++|+++++++++ ++. +|++|+|||+|+|+++++||+
T Consensus 71 ~sfafi~~~~~i~~----------------~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl 134 (429)
T 3qe7_A 71 SSFAFISPVLLLLP----------------LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGL 134 (429)
T ss_dssp ECGGGHHHHHHHGG----------------GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh----------------cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHH
Confidence 99999999877753 25899999999999999999986 433 699999999999999999999
Q ss_pred hhhhhhhccch-----------hhhhhHHHHHHHHHHHHHHcccchhccccchhhHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020061 178 GLYEFGFPGVA-----------KCVEIGLPQLVIIVFISQYLPHVIKRGKNIFDRFAVIFSVVIVWIYAHLLTVGGAYND 246 (331)
Q Consensus 178 sl~~~~~~~~~-----------~~~~l~~~~l~~iv~~~~~~~~~~~~~~~~~r~~aiLigi~vG~i~a~~~g~~g~~~~ 246 (331)
++++.++++.+ .++.+++++++++++++++.| +++|++++|+|+++||++++.+|.
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~~~~la~~tl~iii~~~~~~k-------g~~~~~aiLigivvg~~~a~~~G~------ 201 (429)
T 3qe7_A 135 ELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFR-------GFLAIIPILIGVLVGYALSFAMGI------ 201 (429)
T ss_dssp HHHHHHHHHHTSSCBTTBCCCHHHHHHHHHHHHHHHHHHHSSS-------TTTTTHHHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHhccccCCCCccccHHHHHHHHHHHHHHHHHHHHhc-------ccchhhHHHHHHHHHHHHHHHhcC------
Confidence 99999887543 367888999999888888764 578999999999999999999987
Q ss_pred CCcccccccccccccccCCCCccccccccccCCCcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCCCCccccCccc
Q 020061 247 AAPKTQASCRTDRAGLIDAAPWIRVPWPFQWGAPSFDAGEAFAMMMASFVALVESTGAFFAVARYASATPMPPSVLSRGV 326 (331)
Q Consensus 247 ~~~~~~~~~~~d~~~~v~~a~w~~~P~~~~fg~P~f~~~~i~~~~~~~iv~~~esiG~~~a~~~~~~~~~~~~~~i~rgi 326 (331)
.|++. +.+++|+++|+ |+.|+||++.+..++++++++++|++|++.++++..+++..+++++||++
T Consensus 202 ----------~d~~~-v~~a~~~~lP~---~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l 267 (429)
T 3qe7_A 202 ----------VDTTP-IINAHWFALPT---LYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSM 267 (429)
T ss_dssp ----------TTSSH-HHHSCSSCCCC---CCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHH
T ss_pred ----------CCccc-ccccccccccC---CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHH
Confidence 46664 67789999996 46799999999999999999999999999999999984444678999999
Q ss_pred ccccC
Q 020061 327 GWQVI 331 (331)
Q Consensus 327 ~~dGl 331 (331)
.+||+
T Consensus 268 ~adGl 272 (429)
T 3qe7_A 268 FANGL 272 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99984
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=51.27 E-value=1.4e+02 Score=27.02 Aligned_cols=39 Identities=15% Similarity=-0.060 Sum_probs=26.5
Q ss_pred hhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 52 TVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 52 ~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
....|..+.+..|.++.+...+.....++..++.++-.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 310 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 310 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577777768999887776666666666666666554
No 3
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=48.31 E-value=1.9e+02 Score=27.68 Aligned_cols=76 Identities=20% Similarity=0.299 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 020061 74 IQTLLFVAGLNTLLQSLFGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFKRTMRAIQGSLIVASTLQIVLGFS 153 (331)
Q Consensus 74 i~a~l~~~Gi~TllQ~~~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~~~~~~~~Ga~ivaGlv~illg~t 153 (331)
++..+.+-|++|++=+++| ..|.-- +.-=...++.+ +.. .++ +...+|++.+++++.
T Consensus 263 ~~r~l~adGla~i~~glfG-g~p~Tt---~~en~g~i~~t---g~~-----------sr~-----~~~~ag~~lillgl~ 319 (429)
T 3qe7_A 263 LHRSMFANGLSTVISGFFG-STPNTT---YGENIGVMAIT---RVY-----------STW-----VIGGAAIFAILLSCV 319 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCEEE---CHHHHHHHHHH---TBC-----------CHH-----HHHHHHHHHHHHTCC
T ss_pred cchHHHHHHHHHHHHHhcC-CCCcch---HHHhHHHHHhc---CCc-----------chH-----HHHHHHHHHHHHHHH
Confidence 4689999999999999987 477532 21111111121 111 122 347888899999988
Q ss_pred hhHHhHhhhcCcchHHHHH
Q 020061 154 GLWRNVTRFLSPLSVVPLI 172 (331)
Q Consensus 154 g~~~~l~~~fpP~V~G~vv 172 (331)
+.+..+...+|..|.|.+.
T Consensus 320 pk~~al~~~IP~~vlgg~~ 338 (429)
T 3qe7_A 320 GKLAAAIQMIPLPVMGGVS 338 (429)
T ss_dssp HHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHH
Confidence 7788899999988877654
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=30.85 E-value=2.9e+02 Score=24.73 Aligned_cols=101 Identities=10% Similarity=-0.065 Sum_probs=56.1
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeccccchHHHHHHHHhhcccCCCCCCChhhhh
Q 020061 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMGGSYTFVPSTISIILAGRFSNYSGDPVEKFK 130 (331)
Q Consensus 55 vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g~sf~~l~~~~ai~~~~~~~~~~~~~~~~~~ 130 (331)
.|. +.+..|+++.+...+.+...+...++.++-.. +|.|..++.+.....+.......... .
T Consensus 49 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------------~ 114 (438)
T 3o7q_A 49 LPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------------I 114 (438)
T ss_dssp HHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-------------T
T ss_pred HHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc-------------c
Confidence 355 44557999999888888888888888888765 56666655554322222211100011 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHHhHhhhcCcchHHH
Q 020061 131 RTMRAIQGSLIVASTLQIVLGFSGLWRNVTRFLSPLSVVP 170 (331)
Q Consensus 131 ~~~~~~~Ga~ivaGlv~illg~tg~~~~l~~~fpP~V~G~ 170 (331)
..+..+..+.++.|+..-..-. .....+.+++|+.--+.
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~ 153 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHF 153 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHH
Confidence 2344445555555554433221 12455678888765443
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=21.50 E-value=4.4e+02 Score=23.53 Aligned_cols=37 Identities=5% Similarity=-0.077 Sum_probs=25.3
Q ss_pred hHHHH-hhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 54 LIPTS-LVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 54 ~vP~i-i~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
..|.. +.+..|.++.+...+.....++..++.++-.+
T Consensus 280 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 280 YLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp HHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666 66667999888777666666666666666654
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.82 E-value=3.5e+02 Score=24.30 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHhh---hhhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 020061 34 WPEAILLGFQHYIVMLGT---TVLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (331)
Q Consensus 34 ~~~~l~lglQh~l~~~~~---~i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g 100 (331)
+.......+.+++..+.. ....|.+..+ . .++.+...+.+...+...++.++-.. +|.|..++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~ 98 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 98 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHH
Confidence 344444555555444332 2234554443 5 78888777777777877787777765 4555444333
No 7
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=9.11 E-value=3.2e+02 Score=15.63 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhCCccce
Q 020061 75 QTLLFVAGLNTLLQSLFGTRLPA 97 (331)
Q Consensus 75 ~a~l~~~Gi~TllQ~~~G~rlPi 97 (331)
+-+++.++++.++.+++ +..|+
T Consensus 4 ~E~i~s~ai~Gi~f~lf-~gQPL 25 (26)
T 1bts_A 4 SELLISTAVQGILFALL-GAXXX 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHT-TC---
T ss_pred hHHHHHHHHHHHHHHHH-hcccC
Confidence 45677888888888887 55664
No 8
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=8.96 E-value=1e+02 Score=18.84 Aligned_cols=16 Identities=13% Similarity=0.405 Sum_probs=8.6
Q ss_pred hhhcCcchHHHHHHHH
Q 020061 160 TRFLSPLSVVPLISLV 175 (331)
Q Consensus 160 ~~~fpP~V~G~vv~lI 175 (331)
..++-|+++|.++.++
T Consensus 6 ~~IIaPivVGvvl~L~ 21 (33)
T 2kv5_A 6 SLVIAPIFVGLVLEMI 21 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444566666655544
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=8.74 E-value=1e+02 Score=27.34 Aligned_cols=18 Identities=6% Similarity=-0.036 Sum_probs=8.6
Q ss_pred HHHhhhccCCChHHHHHH
Q 020061 56 PTSLVPQMGGGNEEKAKV 73 (331)
Q Consensus 56 P~ii~~a~gl~~~~~~~l 73 (331)
|..+.+..|.++.+...+
T Consensus 223 ~~~~~~~~g~~~~~~g~~ 240 (375)
T 2gfp_A 223 GVLMGAVLGLSSMTVSIL 240 (375)
T ss_dssp SCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 444444345555544433
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=7.07 E-value=1.1e+03 Score=20.26 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=31.0
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 020061 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (331)
Q Consensus 56 P~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g 100 (331)
|.+ .+..|.++++...+.+...+...++.++-.. +|.|..++.+
T Consensus 24 ~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 71 (375)
T 2gfp_A 24 ADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVG 71 (375)
T ss_dssp HHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHH
T ss_pred HHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 443 4457999998888888888888888777765 5666555443
Done!