Query 020061
Match_columns 331
No_of_seqs 101 out of 1045
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 11:11:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020061.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020061hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 27.0 80 0.0058 26.2 7.7 46 53-100 46-95 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 14.9 2.8E+02 0.021 22.3 12.3 36 55-90 272-307 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 13.5 1.5E+02 0.011 23.5 6.1 45 56-100 31-79 (417)
4 d2e74e1 f.23.24.1 (E:1-32) Pet 9.0 1.3E+02 0.0095 16.2 2.6 15 222-236 12-26 (32)
5 d1oyia_ a.4.5.19 (A:) dsRNA-bi 4.1 66 0.0048 20.1 -0.6 13 21-33 44-56 (62)
6 d1q90m_ f.23.25.1 (M:) PetM su 2.7 4E+02 0.029 14.4 1.9 15 168-182 6-20 (34)
7 d2prra1 a.152.1.3 (A:5-194) Un 2.5 9.2E+02 0.067 17.2 4.9 28 63-90 147-174 (190)
8 d2g0ia1 d.64.2.1 (A:1-111) Hyp 2.0 5.1E+02 0.037 17.7 2.2 15 76-90 29-43 (111)
9 d1ut3a_ g.9.1.1 (A:) Beta-defe 1.9 3.1E+02 0.023 15.1 0.6 10 321-330 6-15 (38)
10 d1q90g_ f.23.26.1 (G:) PetG su 1.9 6.3E+02 0.046 13.3 1.9 11 223-233 4-14 (30)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.04 E-value=80 Score=26.18 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=33.0
Q ss_pred hhHHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 020061 53 VLIPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (331)
Q Consensus 53 i~vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g 100 (331)
++.|.+. + .|++++|...+.+...+..+++.++-.. +|.|.-+..+
T Consensus 46 ~~~p~~~-~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~ 95 (447)
T d1pw4a_ 46 LAMPYLV-E-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG 95 (447)
T ss_dssp HHHHHTT-S-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHH-H-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 4456543 4 6999999988888888888888888775 4555544333
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.89 E-value=2.8e+02 Score=22.33 Aligned_cols=36 Identities=17% Similarity=-0.020 Sum_probs=28.1
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 55 IPTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 55 vP~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
.|..+.+..+.+..+.........+...+++++..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (447)
T d1pw4a_ 272 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307 (447)
T ss_dssp HHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccchhhhhhhcchhhhhhhhhhhhh
Confidence 477777778999988887777777777778887765
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.51 E-value=1.5e+02 Score=23.47 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=34.4
Q ss_pred HHHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeec
Q 020061 56 PTSLVPQMGGGNEEKAKVIQTLLFVAGLNTLLQSL----FGTRLPAVMG 100 (331)
Q Consensus 56 P~ii~~a~gl~~~~~~~li~a~l~~~Gi~TllQ~~----~G~rlPi~~g 100 (331)
|..+.+..|+++.|...+.+...+...++..+-.. +|.|..++.+
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~ 79 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 44466667999999988888888888888888775 6777665544
No 4
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.95 E-value=1.3e+02 Score=16.23 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 020061 222 FAVIFSVVIVWIYAH 236 (331)
Q Consensus 222 ~aiLigi~vG~i~a~ 236 (331)
.++..|+.+|.+++.
T Consensus 12 ialffgiavgiifai 26 (32)
T d2e74e1 12 IALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhheeeE
Confidence 467778888877664
No 5
>d1oyia_ a.4.5.19 (A:) dsRNA-binding protein E3 (E3L) {Vaccinia virus [TaxId: 10245]}
Probab=4.15 E-value=66 Score=20.09 Aligned_cols=13 Identities=23% Similarity=0.514 Sum_probs=10.6
Q ss_pred CCCcccccCCCCC
Q 020061 21 LPSISYCITSPPP 33 (331)
Q Consensus 21 ~~~~~y~~~d~pp 33 (331)
.+.++|..||.||
T Consensus 44 rsamvy~s~d~pp 56 (62)
T d1oyia_ 44 RSAMVYSSDDIPP 56 (62)
T ss_dssp HHTSSEECSSSSC
T ss_pred HhhheecCCCCCC
Confidence 3568899999997
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.67 E-value=4e+02 Score=14.43 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhhh
Q 020061 168 VVPLISLVGFGLYEF 182 (331)
Q Consensus 168 ~G~vv~lIGlsl~~~ 182 (331)
.|+...++|..+...
T Consensus 6 agta~tmig~tl~gl 20 (34)
T d1q90m_ 6 AGTALTMVGMTLVGL 20 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHH
Confidence 345555555554433
No 7
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=2.52 E-value=9.2e+02 Score=17.20 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 020061 63 MGGGNEEKAKVIQTLLFVAGLNTLLQSL 90 (331)
Q Consensus 63 ~gl~~~~~~~li~a~l~~~Gi~TllQ~~ 90 (331)
.|++..|...++..+-+.+.+..+..++
T Consensus 147 ~g~s~~eivel~~~va~~~~~nr~~~~l 174 (190)
T d2prra1 147 HGFTDEDAWDIAAITAFFGLSNRMANTI 174 (190)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4799999988888888888888887776
No 8
>d2g0ia1 d.64.2.1 (A:1-111) Hypothetical protein Smu.848 {Streptococcus mutans [TaxId: 1309]}
Probab=1.98 E-value=5.1e+02 Score=17.71 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 020061 76 TLLFVAGLNTLLQSL 90 (331)
Q Consensus 76 a~l~~~Gi~TllQ~~ 90 (331)
--+.++|++++.|..
T Consensus 29 ~DIVCAaVS~l~~~~ 43 (111)
T d2g0ia1 29 FDIVCAAVSTLSMNL 43 (111)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CcEEEehHHHHHHHH
Confidence 356888999999976
No 9
>d1ut3a_ g.9.1.1 (A:) Beta-defensin, BD {King penguin (Aptenodytes patagonicus), spheniscin-2 [TaxId: 9234]}
Probab=1.93 E-value=3.1e+02 Score=15.13 Aligned_cols=10 Identities=30% Similarity=0.195 Sum_probs=6.8
Q ss_pred ccCccccccc
Q 020061 321 VLSRGVGWQV 330 (331)
Q Consensus 321 ~i~rgi~~dG 330 (331)
+++||+.+.|
T Consensus 6 rlrrgfcarg 15 (38)
T d1ut3a_ 6 RLRRGFCARG 15 (38)
T ss_dssp CSSSCEEESS
T ss_pred hccccccccc
Confidence 5677777665
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=1.87 E-value=6.3e+02 Score=13.33 Aligned_cols=11 Identities=9% Similarity=0.392 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 020061 223 AVIFSVVIVWI 233 (331)
Q Consensus 223 aiLigi~vG~i 233 (331)
+++.||+.|.+
T Consensus 4 ~ll~GivlGli 14 (30)
T d1q90g_ 4 PLLCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHhhH
Confidence 34555555554
Done!