Query 020062
Match_columns 331
No_of_seqs 194 out of 1472
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:42:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 5.5E-57 1.2E-61 435.7 36.8 279 25-323 104-394 (456)
2 PLN02793 Probable polygalactur 100.0 2.2E-56 4.8E-61 434.2 37.6 282 24-319 133-424 (443)
3 PLN02155 polygalacturonase 100.0 8.9E-56 1.9E-60 423.7 36.5 279 26-319 107-393 (394)
4 PLN02188 polygalacturonase/gly 100.0 1.8E-55 3.9E-60 423.3 37.7 280 25-318 113-404 (404)
5 PLN02218 polygalacturonase ADP 100.0 1.3E-55 2.8E-60 427.0 36.0 276 25-318 147-431 (431)
6 PLN03010 polygalacturonase 100.0 2.6E-54 5.7E-59 414.5 35.7 268 25-319 130-404 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1E-53 2.2E-58 404.2 28.8 266 25-307 51-322 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 4.8E-33 1E-37 272.8 21.3 208 25-235 189-405 (542)
9 PLN02793 Probable polygalactur 99.9 1E-21 2.2E-26 191.7 26.6 205 23-267 175-397 (443)
10 PF00295 Glyco_hydro_28: Glyco 99.9 7.8E-22 1.7E-26 186.8 24.2 207 20-266 87-310 (326)
11 PLN02218 polygalacturonase ADP 99.9 1.7E-21 3.7E-26 189.3 26.4 204 23-266 190-410 (431)
12 PLN02155 polygalacturonase 99.9 3E-21 6.5E-26 185.6 26.5 204 24-267 144-366 (394)
13 PLN02188 polygalacturonase/gly 99.9 4.6E-21 9.9E-26 185.1 26.3 205 23-267 153-377 (404)
14 PLN03003 Probable polygalactur 99.9 3.4E-20 7.4E-25 180.0 25.8 205 23-267 136-360 (456)
15 PLN03010 polygalacturonase 99.8 2.7E-18 5.8E-23 165.7 29.0 252 26-312 94-374 (409)
16 PF03718 Glyco_hydro_49: Glyco 99.7 6.8E-16 1.5E-20 149.2 22.2 238 25-294 269-554 (582)
17 COG5434 PGU1 Endopygalactoruna 99.6 3.7E-15 8E-20 147.1 14.9 157 23-205 236-404 (542)
18 TIGR03805 beta_helix_1 paralle 99.2 7.6E-10 1.6E-14 104.4 17.8 177 19-228 16-203 (314)
19 TIGR03808 RR_plus_rpt_1 twin-a 99.1 2.8E-09 6.1E-14 102.7 16.6 156 25-203 106-288 (455)
20 PF12541 DUF3737: Protein of u 98.9 2.1E-08 4.5E-13 89.9 11.9 162 31-232 55-229 (277)
21 TIGR03805 beta_helix_1 paralle 98.8 7.7E-07 1.7E-11 84.0 20.5 169 32-235 61-250 (314)
22 PF12541 DUF3737: Protein of u 98.8 2.5E-07 5.4E-12 83.0 14.1 138 30-205 94-231 (277)
23 PF13229 Beta_helix: Right han 98.6 4.2E-07 9E-12 75.8 9.9 140 69-234 3-144 (158)
24 TIGR03808 RR_plus_rpt_1 twin-a 98.5 6.5E-06 1.4E-10 79.7 15.9 169 19-230 73-285 (455)
25 smart00656 Amb_all Amb_all dom 98.3 1.6E-05 3.4E-10 69.7 13.1 97 91-199 33-144 (190)
26 PF13229 Beta_helix: Right han 98.3 7.4E-06 1.6E-10 68.2 10.6 142 28-207 3-146 (158)
27 PF03718 Glyco_hydro_49: Glyco 98.3 1.3E-05 2.8E-10 78.7 12.9 197 72-293 275-514 (582)
28 PF05048 NosD: Periplasmic cop 98.2 5.5E-05 1.2E-09 68.3 15.3 137 26-205 14-151 (236)
29 PF05048 NosD: Periplasmic cop 98.1 9.7E-05 2.1E-09 66.7 14.7 135 68-233 15-150 (236)
30 COG3866 PelB Pectate lyase [Ca 98.0 0.00013 2.7E-09 67.0 12.3 128 68-199 94-229 (345)
31 COG3866 PelB Pectate lyase [Ca 97.9 0.00087 1.9E-08 61.6 16.4 122 27-171 94-229 (345)
32 smart00656 Amb_all Amb_all dom 97.9 0.00058 1.3E-08 59.9 14.2 144 68-222 33-188 (190)
33 PF12708 Pectate_lyase_3: Pect 97.8 0.0011 2.3E-08 58.7 15.2 122 79-232 96-224 (225)
34 PF00544 Pec_lyase_C: Pectate 97.8 5.4E-05 1.2E-09 66.9 6.7 91 96-199 44-158 (200)
35 PF12708 Pectate_lyase_3: Pect 97.7 0.0014 3E-08 58.0 14.4 112 66-203 112-224 (225)
36 PF00544 Pec_lyase_C: Pectate 97.3 0.0018 4E-08 57.2 9.2 95 72-170 43-157 (200)
37 COG3420 NosD Nitrous oxidase a 96.4 0.34 7.4E-06 45.6 17.0 55 91-145 122-179 (408)
38 PLN02480 Probable pectinestera 96.0 0.66 1.4E-05 44.4 17.5 135 72-231 129-280 (343)
39 COG3420 NosD Nitrous oxidase a 94.6 0.48 1E-05 44.7 11.0 34 6-40 80-113 (408)
40 PLN02773 pectinesterase 93.7 3.8 8.2E-05 38.8 15.4 137 70-231 97-243 (317)
41 PLN02773 pectinesterase 92.9 2.5 5.4E-05 40.0 12.9 114 94-229 98-213 (317)
42 PF01696 Adeno_E1B_55K: Adenov 91.6 4.8 0.0001 39.0 13.2 98 75-193 121-219 (386)
43 PLN02506 putative pectinestera 91.4 9.8 0.00021 38.7 15.8 133 71-228 315-459 (537)
44 PLN02170 probable pectinestera 90.8 13 0.00028 37.7 15.9 136 71-231 309-455 (529)
45 PLN02468 putative pectinestera 90.6 13 0.00027 38.2 15.9 136 73-228 343-490 (565)
46 PF07602 DUF1565: Protein of u 90.3 3.7 8.1E-05 37.4 10.6 101 94-205 93-194 (246)
47 PLN02682 pectinesterase family 90.1 19 0.00041 34.9 16.3 135 71-230 159-307 (369)
48 PLN02745 Putative pectinestera 89.7 25 0.00055 36.3 17.3 140 72-231 369-524 (596)
49 PLN02995 Probable pectinestera 89.4 20 0.00043 36.6 16.1 140 72-231 309-464 (539)
50 PLN02480 Probable pectinestera 89.4 7.9 0.00017 37.1 12.5 114 94-228 128-252 (343)
51 PLN02916 pectinesterase family 89.1 24 0.00052 35.6 16.1 141 71-231 273-429 (502)
52 PLN02314 pectinesterase 89.0 17 0.00037 37.4 15.5 136 72-228 362-509 (586)
53 PLN02634 probable pectinestera 88.8 23 0.0005 34.1 17.0 131 73-228 147-291 (359)
54 PLN02217 probable pectinestera 88.8 21 0.00047 37.3 16.0 140 72-231 334-489 (670)
55 PLN02933 Probable pectinestera 88.7 26 0.00056 35.6 16.2 141 71-231 301-457 (530)
56 PLN02665 pectinesterase family 88.6 24 0.00053 34.1 15.4 137 70-231 149-301 (366)
57 PLN02708 Probable pectinestera 88.5 26 0.00056 35.9 16.3 108 72-199 327-449 (553)
58 PLN02301 pectinesterase/pectin 88.3 15 0.00033 37.4 14.4 108 72-199 320-438 (548)
59 PLN02713 Probable pectinestera 88.2 20 0.00043 36.8 15.2 140 72-231 337-492 (566)
60 PLN02708 Probable pectinestera 88.1 11 0.00024 38.5 13.3 114 94-228 326-449 (553)
61 PLN02201 probable pectinestera 87.8 34 0.00073 34.7 16.4 140 72-231 290-445 (520)
62 PLN02416 probable pectinestera 87.8 24 0.00053 36.0 15.5 137 72-228 314-466 (541)
63 PLN02484 probable pectinestera 87.5 31 0.00068 35.6 16.2 141 71-231 356-512 (587)
64 PLN02313 Pectinesterase/pectin 87.2 19 0.00041 37.2 14.4 61 73-139 360-425 (587)
65 PLN02682 pectinesterase family 87.0 14 0.0003 35.7 12.6 114 94-228 159-280 (369)
66 PRK10123 wcaM putative colanic 86.7 4.7 0.0001 37.4 8.7 102 119-228 262-374 (464)
67 PLN03043 Probable pectinestera 86.4 41 0.00089 34.3 17.0 141 71-231 309-465 (538)
68 PLN02990 Probable pectinestera 86.4 38 0.00081 34.9 16.0 140 72-231 344-499 (572)
69 PRK10531 acyl-CoA thioesterase 85.8 22 0.00047 35.0 13.4 48 96-143 204-256 (422)
70 PRK10123 wcaM putative colanic 85.6 4.9 0.00011 37.3 8.3 15 280-294 299-313 (464)
71 PF03211 Pectate_lyase: Pectat 85.5 21 0.00046 31.8 12.1 42 99-146 62-104 (215)
72 PLN02197 pectinesterase 85.1 36 0.00078 35.1 15.2 137 72-228 361-514 (588)
73 PLN02432 putative pectinestera 84.9 34 0.00074 32.1 15.7 61 73-139 92-156 (293)
74 PF01696 Adeno_E1B_55K: Adenov 84.6 4 8.6E-05 39.5 7.6 84 94-199 117-200 (386)
75 PLN02916 pectinesterase family 84.5 21 0.00046 36.0 12.9 114 94-228 273-392 (502)
76 PLN02634 probable pectinestera 84.3 18 0.00039 34.8 11.9 112 95-228 146-266 (359)
77 PLN02432 putative pectinestera 84.1 23 0.0005 33.2 12.3 111 95-227 91-204 (293)
78 PLN02497 probable pectinestera 84.0 40 0.00087 32.1 15.4 132 72-228 112-264 (331)
79 PLN02665 pectinesterase family 84.0 31 0.00067 33.4 13.4 117 92-229 148-273 (366)
80 PLN02170 probable pectinestera 83.4 25 0.00053 35.8 12.9 115 93-228 308-427 (529)
81 PLN02671 pectinesterase 82.8 47 0.001 32.0 16.6 135 71-230 150-297 (359)
82 TIGR03804 para_beta_helix para 82.7 1.5 3.2E-05 28.4 2.8 39 92-135 2-40 (44)
83 PRK10531 acyl-CoA thioesterase 82.6 26 0.00057 34.5 12.4 149 69-231 200-379 (422)
84 PLN02304 probable pectinestera 82.5 50 0.0011 32.1 16.3 133 72-229 159-313 (379)
85 PLN02698 Probable pectinestera 81.8 36 0.00079 34.4 13.5 47 96-142 268-315 (497)
86 PLN02506 putative pectinestera 81.5 10 0.00022 38.6 9.6 114 93-228 314-434 (537)
87 PLN02671 pectinesterase 81.4 27 0.00058 33.7 11.9 114 94-228 150-270 (359)
88 PF09251 PhageP22-tail: Salmon 81.3 29 0.00064 34.0 11.9 66 157-224 262-346 (549)
89 PLN02713 Probable pectinestera 80.5 13 0.00029 38.0 10.0 114 94-228 336-455 (566)
90 PF01095 Pectinesterase: Pecti 80.4 16 0.00034 34.3 9.9 136 72-231 84-239 (298)
91 PLN02698 Probable pectinestera 79.3 44 0.00094 33.8 13.1 140 72-231 267-422 (497)
92 PLN02468 putative pectinestera 79.1 14 0.0003 37.9 9.7 114 94-228 341-460 (565)
93 PLN02745 Putative pectinestera 79.1 16 0.00035 37.7 10.1 113 94-228 368-487 (596)
94 PLN02301 pectinesterase/pectin 78.6 15 0.00032 37.5 9.6 113 94-228 319-438 (548)
95 PLN02416 probable pectinestera 78.6 13 0.00028 38.0 9.2 113 94-228 313-432 (541)
96 PLN03043 Probable pectinestera 77.6 17 0.00037 37.1 9.7 114 94-228 309-428 (538)
97 PF01095 Pectinesterase: Pecti 77.3 9 0.00019 36.0 7.2 113 95-228 84-202 (298)
98 PLN02197 pectinesterase 77.3 19 0.00041 37.1 10.0 113 94-228 360-480 (588)
99 PLN02201 probable pectinestera 77.1 23 0.0005 35.9 10.4 114 94-228 289-408 (520)
100 PLN02488 probable pectinestera 76.5 91 0.002 31.6 16.0 61 73-139 282-347 (509)
101 PLN02488 probable pectinestera 76.4 25 0.00055 35.4 10.3 114 95-229 281-400 (509)
102 PLN02176 putative pectinestera 76.1 22 0.00047 34.1 9.4 15 73-87 120-134 (340)
103 PLN02933 Probable pectinestera 75.7 21 0.00046 36.3 9.7 114 94-228 301-420 (530)
104 PLN02497 probable pectinestera 75.4 47 0.001 31.7 11.5 114 94-228 111-239 (331)
105 PLN02217 probable pectinestera 75.3 15 0.00032 38.4 8.7 112 95-228 334-452 (670)
106 PLN02176 putative pectinestera 75.1 80 0.0017 30.3 16.0 81 96-197 120-207 (340)
107 PLN02314 pectinesterase 75.0 20 0.00044 36.9 9.6 114 94-229 361-481 (586)
108 PLN02304 probable pectinestera 74.5 32 0.00069 33.5 10.2 113 94-227 158-286 (379)
109 TIGR03804 para_beta_helix para 74.5 4 8.7E-05 26.2 3.0 28 118-145 1-28 (44)
110 PLN02990 Probable pectinestera 74.4 21 0.00046 36.6 9.5 113 95-229 344-463 (572)
111 PLN02484 probable pectinestera 73.8 20 0.00043 37.0 9.1 114 94-228 356-475 (587)
112 PF07602 DUF1565: Protein of u 73.7 72 0.0016 29.1 12.1 99 159-264 122-224 (246)
113 PLN02313 Pectinesterase/pectin 72.3 25 0.00053 36.3 9.4 113 94-228 358-477 (587)
114 PF14592 Chondroitinas_B: Chon 71.9 51 0.0011 32.5 11.0 132 69-207 62-222 (425)
115 PLN02995 Probable pectinestera 71.1 25 0.00054 35.9 9.0 112 95-228 309-427 (539)
116 PF09251 PhageP22-tail: Salmon 56.9 30 0.00066 33.9 6.2 92 123-228 262-367 (549)
117 PF08480 Disaggr_assoc: Disagg 49.2 1.4E+02 0.0031 26.0 8.5 40 160-199 3-46 (198)
118 COG4677 PemB Pectin methyleste 47.4 58 0.0013 31.0 6.3 14 96-109 219-232 (405)
119 smart00710 PbH1 Parallel beta- 45.9 31 0.00068 18.3 2.9 11 126-136 3-13 (26)
120 PF03211 Pectate_lyase: Pectat 36.9 3.1E+02 0.0067 24.5 14.2 133 68-222 56-194 (215)
121 PF14592 Chondroitinas_B: Chon 33.9 3.5E+02 0.0075 26.8 9.6 45 184-228 307-363 (425)
122 PF03077 VacA2: Putative vacuo 31.0 1.3E+02 0.0029 21.1 4.5 44 32-88 11-54 (60)
123 KOG2675 Adenylate cyclase-asso 22.1 1.9E+02 0.004 28.7 5.3 12 68-79 355-366 (480)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=5.5e-57 Score=435.66 Aligned_cols=279 Identities=31% Similarity=0.485 Sum_probs=249.3
Q ss_pred eeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEe
Q 020062 25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKG 104 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n 104 (331)
..||+|.+++|++|+|. |+|||+|+.||.. ...||++|+|.+|+|++|+||+++|+|.|++++..|++|+|++
T Consensus 104 ~~wI~f~~~~~i~I~G~-GtIDGqG~~wW~~------~~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~c~nV~i~~ 176 (456)
T PLN03003 104 DQWILFTDIEGLVIEGD-GEINGQGSSWWEH------KGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISS 176 (456)
T ss_pred cceEEEEcccceEEecc-ceEeCCchhhhhc------ccCCceEEEEEecCCcEEeCeEEecCCcEEEEEeccccEEEEE
Confidence 46999999999999998 9999999999974 2469999999999999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEecccc-
Q 020062 105 MTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMS- 183 (331)
Q Consensus 105 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~- 183 (331)
++|.++.+.+|+||||+.+|+||+|+||+|.+|||||++|++ ++||+|+||.|.. +|||+|||++.
T Consensus 177 l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksg-----------s~NI~I~n~~c~~--GHGISIGSlg~~ 243 (456)
T PLN03003 177 LRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGP--GHGISIGSLGKD 243 (456)
T ss_pred EEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCC-----------CccEEEEeeEEEC--CCCeEEeeccCC
Confidence 999998889999999999999999999999999999999986 7999999999964 69999999964
Q ss_pred ---CCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEccCCCCC-CCCC-CCCCCCeEeeEE
Q 020062 184 ---GGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHP-DEGW-DPKALPKIRGIS 258 (331)
Q Consensus 184 ---g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~-~~~~-~~~~~~~i~nIt 258 (331)
+.|+||+|+||++.++.+|+|||+++|++|.|+||+|+||+|+++..||.|++.|...+ ...+ .+...+.|+||+
T Consensus 244 g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~ 323 (456)
T PLN03003 244 GETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVV 323 (456)
T ss_pred CCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEE
Confidence 45999999999999999999999999888999999999999999999999999997532 2111 233457999999
Q ss_pred EEEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecC-C---CCceEEEeeeeecccccC-CCCCCCCCC
Q 020062 259 FVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLA-P---SAKWQCQFVSGFTSQVFP-LPCPQLQNK 323 (331)
Q Consensus 259 ~~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~-~---~~~~~c~~v~g~~~~~~p-~~c~~~~~~ 323 (331)
|+||+++... .++.|.|.++.||++|+|+||.++... + .+.+.|.|+.|....+.| .+|+++...
T Consensus 324 f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~~~~~ 394 (456)
T PLN03003 324 FSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLELSTD 394 (456)
T ss_pred EEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccccCCC
Confidence 9999998654 578899999999999999999999762 2 358999999999887744 579987654
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=2.2e-56 Score=434.18 Aligned_cols=282 Identities=28% Similarity=0.423 Sum_probs=249.3
Q ss_pred ceeeEEEeceeeeEEEeCCeEEEcCCchhhccccc---CCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcE
Q 020062 24 HISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWN---RTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNV 100 (331)
Q Consensus 24 ~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~---~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV 100 (331)
..+||++.+++||+|+|. |+|||+|+.||..... ......||++|.|.+|+|++|+||+++|+|.|++++..|+||
T Consensus 133 ~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~nv 211 (443)
T PLN02793 133 PRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRV 211 (443)
T ss_pred CceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccCcE
Confidence 357999999999999998 9999999999975321 111245899999999999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEec
Q 020062 101 VIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGS 180 (331)
Q Consensus 101 ~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs 180 (331)
+|+|++|.++.+.+|+||||+.+|+||+|+||+|+++||||++|++ ++||+|+||.|.. +|||+|||
T Consensus 212 ~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-----------s~nI~I~n~~c~~--GhGisIGS 278 (443)
T PLN02793 212 TISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-----------SSRIKIRNIACGP--GHGISIGS 278 (443)
T ss_pred EEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------cCCEEEEEeEEeC--CccEEEec
Confidence 9999999998888999999999999999999999999999999984 7999999999965 68999999
Q ss_pred cc----cCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEee
Q 020062 181 EM----SGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRG 256 (331)
Q Consensus 181 ~~----~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 256 (331)
++ .+.|+||+|+||++.++.+|++||++++++|.|+||+|+||+|+++..||.|++.|......+..+...+.|+|
T Consensus 279 lg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~n 358 (443)
T PLN02793 279 LGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVEN 358 (443)
T ss_pred ccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEe
Confidence 73 46899999999999999999999999988899999999999999999999999998653222222344568999
Q ss_pred EEEEEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCC-CCceEEEeeeeeccc-ccCCCCCC
Q 020062 257 ISFVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAP-SAKWQCQFVSGFTSQ-VFPLPCPQ 319 (331)
Q Consensus 257 It~~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~-~~~~~c~~v~g~~~~-~~p~~c~~ 319 (331)
|+|+||+++.+. .++.|.|.++.+|++|+|+||+|+...+ ...+.|.|+.|.... +.|.||++
T Consensus 359 I~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~ 424 (443)
T PLN02793 359 ISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFS 424 (443)
T ss_pred EEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCcccc
Confidence 999999999853 5788999999999999999999997654 457899999999886 68889974
No 3
>PLN02155 polygalacturonase
Probab=100.00 E-value=8.9e-56 Score=423.73 Aligned_cols=279 Identities=24% Similarity=0.345 Sum_probs=247.2
Q ss_pred eeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeE
Q 020062 26 SLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGM 105 (331)
Q Consensus 26 ~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~ 105 (331)
.||.+.+++|+.|+| |+|||+|+.||...........+|++|+|.+|++++|+||+++|||.|++++..|+||+|+|+
T Consensus 107 ~wi~~~~~~~i~i~G--G~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v 184 (394)
T PLN02155 107 YWILFNKVNRFSLVG--GTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNV 184 (394)
T ss_pred eeEEEECcCCCEEEc--cEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEE
Confidence 489999999999999 899999999997643322223578999999999999999999999999999999999999999
Q ss_pred EEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEecc----
Q 020062 106 TILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSE---- 181 (331)
Q Consensus 106 ~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~---- 181 (331)
+|.++.+++|+||||+.+|+||+|+||+|.+||||||+|++ ++||+|+||.|.. +|||+|||+
T Consensus 185 ~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~g-----------s~nI~I~n~~c~~--GhGisIGS~g~~~ 251 (394)
T PLN02155 185 KLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPG-----------TRNFLITKLACGP--GHGVSIGSLAKEL 251 (394)
T ss_pred EEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCC-----------CceEEEEEEEEEC--CceEEeccccccC
Confidence 99998888999999999999999999999999999999985 7999999999975 699999997
Q ss_pred ccCCEEEEEEEeeEEeCCCceEEEEEecC-CCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEeeEEEE
Q 020062 182 MSGGIFNVTVDQLHVWDAAAGVRIKTDKG-RGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFV 260 (331)
Q Consensus 182 ~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g-~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ 260 (331)
+.+.|+||+|+||+|.++.+|++||++.+ ++|.|+||+|+||+|++++.||.|++.|......+..+...+.|+||+|+
T Consensus 252 ~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ 331 (394)
T PLN02155 252 NEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYK 331 (394)
T ss_pred CCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEE
Confidence 36789999999999999999999999864 68999999999999999999999999996533222222334689999999
Q ss_pred EEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCCC-CceEEEeeeeecccc-cCCCCCC
Q 020062 261 NVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAPS-AKWQCQFVSGFTSQV-FPLPCPQ 319 (331)
Q Consensus 261 NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~~-~~~~c~~v~g~~~~~-~p~~c~~ 319 (331)
||+++.+. .++.|.|.++.+|++|+|+||+++...+. +.+.|.++.|....+ .|.+|++
T Consensus 332 ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 332 NIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred eeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 99999874 57789999999999999999999987653 589999999998877 8888965
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.8e-55 Score=423.27 Aligned_cols=280 Identities=28% Similarity=0.381 Sum_probs=246.0
Q ss_pred eeeEEEeceeeeEEEeCCeEEEcCCchhhccccc--CCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEE
Q 020062 25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWN--RTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVI 102 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~--~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i 102 (331)
..+|.+..++||+|+|. |+|||+|+.||..... ......||++|.|.+|+|++|+|++++|+|+|++++..|++|+|
T Consensus 113 ~~~i~~~~~~ni~I~G~-G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v~i 191 (404)
T PLN02188 113 NDWIEFGWVNGLTLTGG-GTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKG 191 (404)
T ss_pred cceEEEeceeeEEEEee-EEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccEEE
Confidence 35788889999999998 9999999999974321 11235699999999999999999999999999999999999999
Q ss_pred EeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEec--
Q 020062 103 KGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGS-- 180 (331)
Q Consensus 103 ~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs-- 180 (331)
++++|.++.+++|+||||+.+|+||+|+||+|.++||||++|++ ++||+|+||.|.. +|||+|||
T Consensus 192 ~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg-----------~~nI~I~n~~c~~--ghGisiGSlG 258 (404)
T PLN02188 192 SGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG-----------NSQVTITRIRCGP--GHGISVGSLG 258 (404)
T ss_pred EEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccC-----------CccEEEEEEEEcC--CCcEEeCCCC
Confidence 99999998888999999999999999999999999999999985 6899999999954 69999999
Q ss_pred --cccCCEEEEEEEeeEEeCCCceEEEEEecC--CCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEee
Q 020062 181 --EMSGGIFNVTVDQLHVWDAAAGVRIKTDKG--RGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRG 256 (331)
Q Consensus 181 --~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g--~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 256 (331)
++.+.|+||+|+||+|.++.+|++||++.+ ++|.|+||+|+||+|++++.||.|++.|...+.....+...+.|+|
T Consensus 259 ~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~n 338 (404)
T PLN02188 259 RYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSD 338 (404)
T ss_pred CCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEe
Confidence 667889999999999999999999999975 3589999999999999999999999998754321111233568999
Q ss_pred EEEEEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCC--CCceEEEeeeeecc-cccCCCCC
Q 020062 257 ISFVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAP--SAKWQCQFVSGFTS-QVFPLPCP 318 (331)
Q Consensus 257 It~~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~--~~~~~c~~v~g~~~-~~~p~~c~ 318 (331)
|+|+||+++... .++.|.|.++.||++|+|+||+++.+.+ ...+.|.++.|... .+.|.+|+
T Consensus 339 It~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 339 IYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred EEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 999999998864 4788999999999999999999997744 34799999999988 66888896
No 5
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.3e-55 Score=426.99 Aligned_cols=276 Identities=27% Similarity=0.432 Sum_probs=244.0
Q ss_pred eeeEEEeceeeeEEEeC-CeEEEcCCchhhcccccCC---CCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcE
Q 020062 25 ISLIHGDHLTNVIITGY-NGTIDGQGQMWWDLWWNRT---LKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNV 100 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~-~G~IdG~g~~~w~~~~~~~---~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV 100 (331)
..||++.+++||+|+|. .|+|||+|+.||....... ....||++|.|.+|+|++|+||+++|+|+|++++..|+||
T Consensus 147 ~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i~~~~~~nV 226 (431)
T PLN02218 147 SKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNV 226 (431)
T ss_pred ccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEEEEEceeeE
Confidence 46899999999999994 3999999999997542211 1246999999999999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEec
Q 020062 101 VIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGS 180 (331)
Q Consensus 101 ~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs 180 (331)
+|+|++|.++.+.+|+||||+.+|+||+|+||+|.+|||||+||++ ++||+|+||.|.. +|||+|||
T Consensus 227 ~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksg-----------s~nI~I~n~~c~~--GHGisIGS 293 (431)
T PLN02218 227 QVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESG-----------SQNVQINDITCGP--GHGISIGS 293 (431)
T ss_pred EEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCC-----------CceEEEEeEEEEC--CCCEEECc
Confidence 9999999998888999999999999999999999999999999996 7999999999964 68999999
Q ss_pred ccc----CCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEee
Q 020062 181 EMS----GGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRG 256 (331)
Q Consensus 181 ~~~----g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 256 (331)
++. +.|+||+|+||++.++.+|+|||+++|++|.|+||+|+||+|++++.||.|++.|+..+.. ..+...+.|+|
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~-~~~~s~v~I~n 372 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKC-TSQQSAVQVKN 372 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCC-CCCCCCeEEEE
Confidence 973 5799999999999999999999999999999999999999999999999999999754321 12234568999
Q ss_pred EEEEEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCCCCceEEEeeeeecccccCCCCC
Q 020062 257 ISFVNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSGFTSQVFPLPCP 318 (331)
Q Consensus 257 It~~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~~~~~~c~~v~g~~~~~~p~~c~ 318 (331)
|+|+||+++.+. .++.|.|.++.||++|+|+||++++. ...|.|+.+....+.|-.|.
T Consensus 373 I~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p~c~ 431 (431)
T PLN02218 373 VVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSPQCN 431 (431)
T ss_pred EEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCCCCC
Confidence 999999999764 57889999999999999999999863 45799999998877543673
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=2.6e-54 Score=414.49 Aligned_cols=268 Identities=30% Similarity=0.435 Sum_probs=241.2
Q ss_pred eeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEe
Q 020062 25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKG 104 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n 104 (331)
..||.+.+++||+|+|. |+|||+|+.||. +++|.+|+|++|+||+++|+|.|++++..|++|+|+|
T Consensus 130 ~~wi~f~~v~nv~I~G~-G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~~~nv~i~~ 195 (409)
T PLN03010 130 QMWISFSTVSGLMIDGS-GTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKTCNYVAISK 195 (409)
T ss_pred cceEEEecccccEEeec-eEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEeccccEEEEE
Confidence 46899999999999998 999999999995 6999999999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccC
Q 020062 105 MTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSG 184 (331)
Q Consensus 105 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g 184 (331)
++|.++..++|+||||+.+|+||+|+||+|+++||||++|++ +.|+.|+++.|.. +|||+|||++.+
T Consensus 196 i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksg-----------s~ni~I~~~~C~~--gHGisIGS~g~~ 262 (409)
T PLN03010 196 INILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSG-----------SSNINITQINCGP--GHGISVGSLGAD 262 (409)
T ss_pred EEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCC-----------CCcEEEEEEEeEC--cCCEEEccCCCC
Confidence 999998878999999999999999999999999999999996 5788888888864 689999999654
Q ss_pred ----CEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEeeEEEE
Q 020062 185 ----GIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFV 260 (331)
Q Consensus 185 ----~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ 260 (331)
.|+||+|+||+|.++.+|+|||+++|++|.|+||+|+||+|+++++||.|++.|......+..+.....|+||+|+
T Consensus 263 ~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ 342 (409)
T PLN03010 263 GANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYV 342 (409)
T ss_pred CCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEE
Confidence 4999999999999999999999999889999999999999999999999999997543333334556799999999
Q ss_pred EEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCC-CCceEEEeeeeecc-cccCCCCCC
Q 020062 261 NVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAP-SAKWQCQFVSGFTS-QVFPLPCPQ 319 (331)
Q Consensus 261 NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~-~~~~~c~~v~g~~~-~~~p~~c~~ 319 (331)
||+++.+. .++.|.|.+..+|++|+|+||+++...+ .+.+.|.++.+... ...|.+|++
T Consensus 343 ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 343 GFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred eeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 99998654 5789999999999999999999998754 46899999999876 447778984
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1e-53 Score=404.22 Aligned_cols=266 Identities=42% Similarity=0.657 Sum_probs=232.8
Q ss_pred eeeEEEeceeeeEEEeCCeEEEcCCchhhccccc-CCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEE
Q 020062 25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWN-RTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIK 103 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~-~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~ 103 (331)
.+||++.+++|++|+|. |+|||+|+.||+.... ......||++|.|.+|++++|+|++++++|.|++++..|+||+|+
T Consensus 51 ~~~i~~~~~~ni~i~G~-G~IDG~G~~w~~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~ 129 (326)
T PF00295_consen 51 SALIYAENAENITITGK-GTIDGNGQAWWDGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTIS 129 (326)
T ss_dssp SEEEEEESEEEEECTTS-SEEE--GGGTCSSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEE
T ss_pred cEEEEEEceEEEEecCC-ceEcCchhhhhccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEc
Confidence 79999999999999998 9999999999986543 123467999999999999999999999999999999999999999
Q ss_pred eEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEecccc
Q 020062 104 GMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMS 183 (331)
Q Consensus 104 n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~ 183 (331)
+++|.++...+|+||||+.+|+||+|+||+|+++|||||+|++ ..||+|+||++.. +||++|||++.
T Consensus 130 ~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~-----------~~ni~v~n~~~~~--ghGisiGS~~~ 196 (326)
T PF00295_consen 130 NITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSG-----------SGNILVENCTCSG--GHGISIGSEGS 196 (326)
T ss_dssp SEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSE-----------ECEEEEESEEEES--SSEEEEEEESS
T ss_pred ceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCccccccc-----------ccceEEEeEEEec--cccceeeeccC
Confidence 9999998778999999999999999999999999999999996 4599999999986 69999999976
Q ss_pred C----CEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEeeEEE
Q 020062 184 G----GIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISF 259 (331)
Q Consensus 184 g----~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~ 259 (331)
+ .|+||+|+||+|.++.+|++||++++++|.|+||+|+||+|+++..||.|++.|..... ...++..+.|+||+|
T Consensus 197 ~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~-~~~~~~~~~i~nI~~ 275 (326)
T PF00295_consen 197 GGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGP-CGKPPSGVSISNITF 275 (326)
T ss_dssp SSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEE-SSCSSSSSEEEEEEE
T ss_pred CccccEEEeEEEEEEEeeccceEEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccc-cCcccCCceEEEEEE
Confidence 5 59999999999999999999999998899999999999999999999999998865211 112234568999999
Q ss_pred EEEEEecCC-cceEEEecCCCCeeeEEEEeEEEEecCCCCceEEEeeee
Q 020062 260 VNVVSVNTT-KAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQFVSG 307 (331)
Q Consensus 260 ~NI~~~~~~-~~~~i~g~~~~~i~~I~~~NV~i~~~~~~~~~~c~~v~g 307 (331)
+||+++... .++.|.|.+..+|++|+|+||+|+. +..++.|+++..
T Consensus 276 ~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~~~c~nv~~ 322 (326)
T PF00295_consen 276 RNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKPAQCKNVPS 322 (326)
T ss_dssp EEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSESEEBSCCT
T ss_pred EeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcCeEEECCCC
Confidence 999999876 5788999999999999999999999 356889998854
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.8e-33 Score=272.80 Aligned_cols=208 Identities=39% Similarity=0.628 Sum_probs=180.6
Q ss_pred eeeEEEeceeeeE-EEeCCeEEEcCC----chhhcccc--cCCCCC--CCceEEEEEeeccEEEeceEEeCCCceEEeEE
Q 020062 25 ISLIHGDHLTNVI-ITGYNGTIDGQG----QMWWDLWW--NRTLKH--TRGHLVELMNSNNILISNLTFRNSPFWTIHPV 95 (331)
Q Consensus 25 ~~lI~~~~~~nV~-I~G~~G~IdG~g----~~~w~~~~--~~~~~~--~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~ 95 (331)
..++.....+|.. |.|. |+|+|++ ..||...+ ...... .||+++.|..|+||+++|+++.+++.|++|+.
T Consensus 189 ~~~~~~~~~~n~~~i~g~-~~i~g~~~~~g~~~~~~~g~~~~~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~ 267 (542)
T COG5434 189 ADLLIAGNSSNRKEIWGK-GTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPV 267 (542)
T ss_pred cccceeccCCceEEEecc-ceecCccccchhhhhhcccchhhcccccCcCCceEEEeccceEEEeeeEecCCCcEEEeee
Confidence 3445555556666 9998 9999964 23776554 122223 69999999999999999999999999999999
Q ss_pred eeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCE
Q 020062 96 YCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSG 175 (331)
Q Consensus 96 ~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~g 175 (331)
.|+|++++|++|.+.... |+|||++.+|+||+|++|+|.++||||++|++...++-+...+++||+|+||++..+ +.+
T Consensus 268 ~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~g-hG~ 345 (542)
T COG5434 268 DCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSG-HGG 345 (542)
T ss_pred cccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEecceeccc-ccc
Confidence 999999999999997644 999999999999999999999999999999998777656677999999999999876 888
Q ss_pred EEEeccccCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEE
Q 020062 176 VGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRIS 235 (331)
Q Consensus 176 i~iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~ 235 (331)
+.+|||+.|.|+||++|||.|.++.+|||||+..+++|.++||+|++++|.++..+..+.
T Consensus 346 ~v~Gse~~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 346 LVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred eEeeeecCCceeEEEEEeeeeccCcceeeeeeecccceeEEEEEEecccccCcccceeee
Confidence 999999999999999999999999999999999999999999999999999985443333
No 9
>PLN02793 Probable polygalacturonase
Probab=99.90 E-value=1e-21 Score=191.65 Aligned_cols=205 Identities=19% Similarity=0.152 Sum_probs=164.6
Q ss_pred cceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC----ceEEeEEeeE
Q 020062 23 RHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP----FWTIHPVYCR 98 (331)
Q Consensus 23 ~~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~----~~~i~~~~s~ 98 (331)
.+|.+|.+.+|+|++|.|. -+++ ...| .+++.+|+||+|++|++.++. ..+|++.+|+
T Consensus 175 ~rP~~i~f~~~~nv~v~gi-tl~n--Sp~~---------------~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~ 236 (443)
T PLN02793 175 HAPTAITFHKCKDLRVENL-NVID--SQQM---------------HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASR 236 (443)
T ss_pred CCceEEEEEeeccEEEECe-EEEc--CCCe---------------EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccc
Confidence 4688999999999999998 4443 2233 589999999999999998743 3469999999
Q ss_pred cEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEE
Q 020062 99 NVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVG 177 (331)
Q Consensus 99 nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~ 177 (331)
||+|+|++|.++| |.+.+. +|+||+|+||....|+ +|+|+|..... ....++||+|+||++... .+|++
T Consensus 237 nV~I~n~~I~~gD-----DcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg~~~---~~~~V~nV~v~n~~~~~t-~~Gir 306 (443)
T PLN02793 237 GVVIKDSIVRTGD-----DCISIVGNSSRIKIRNIACGPGH-GISIGSLGKSN---SWSEVRDITVDGAFLSNT-DNGVR 306 (443)
T ss_pred eEEEEeCEEeCCC-----CeEEecCCcCCEEEEEeEEeCCc-cEEEecccCcC---CCCcEEEEEEEccEEeCC-CceEE
Confidence 9999999999975 667775 7999999999998886 69999952211 124689999999999987 89999
Q ss_pred Eeccc--cCCEEEEEEEeeEEeCCCceEEEEEecC----------CCceEEeEEEEEEEEcccc-ccEEEEccCCCCCCC
Q 020062 178 IGSEM--SGGIFNVTVDQLHVWDAAAGVRIKTDKG----------RGGYIENITIRNIKMERVK-IPIRISRGSNDHPDE 244 (331)
Q Consensus 178 iGs~~--~g~i~nI~~~n~~i~~~~~gi~Ik~~~g----------~~g~i~nV~f~nI~~~~~~-~~i~i~~~y~~~~~~ 244 (331)
|++.. .|.++||+|+|++|.++.+++.|..... ....|+||+|+||+.+... .++.+...
T Consensus 307 IKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs------- 379 (443)
T PLN02793 307 IKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACS------- 379 (443)
T ss_pred EEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeC-------
Confidence 99863 4689999999999999999999976421 1246999999999988753 45655531
Q ss_pred CCCCCCCCeEeeEEEEEEEEecC
Q 020062 245 GWDPKALPKIRGISFVNVVSVNT 267 (331)
Q Consensus 245 ~~~~~~~~~i~nIt~~NI~~~~~ 267 (331)
...+++||+|+||+++..
T Consensus 380 -----~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 380 -----DSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred -----CCCCEeeEEEEeeEEEec
Confidence 123699999999999854
No 10
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.90 E-value=7.8e-22 Score=186.77 Aligned_cols=207 Identities=26% Similarity=0.295 Sum_probs=164.2
Q ss_pred CCCcceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCc----eEEeEE
Q 020062 20 LGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPF----WTIHPV 95 (331)
Q Consensus 20 ~~~~~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~----~~i~~~ 95 (331)
+...+|.||.+.+++|++|+|. +|- +...| .+++.+|+||+|+++++.+++. .+|++.
T Consensus 87 ~~~~rp~~i~~~~~~~~~i~~i--~~~-nsp~w---------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~ 148 (326)
T PF00295_consen 87 NGQRRPRLIRFNNCKNVTIEGI--TIR-NSPFW---------------HIHINDCDNVTISNITINNPANSPNTDGIDID 148 (326)
T ss_dssp SSSSSSESEEEEEEEEEEEESE--EEE-S-SSE---------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEE
T ss_pred ccccccceeeeeeecceEEEee--Eec-CCCee---------------EEEEEccCCeEEcceEEEecCCCCCcceEEEE
Confidence 3345789999999999999997 553 33333 4899999999999999987643 469999
Q ss_pred eeEcEEEEeEEEECCCCCCCCCccccCCCc-cEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCC
Q 020062 96 YCRNVVIKGMTILAPLNAPNTDGIDPDSST-NVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCS 174 (331)
Q Consensus 96 ~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~ 174 (331)
+|+||+|+|+.|.+.| |.|.+.+.+ ||+|+||.+..+. ++++++.... +. ....+||+|+||.+... .+
T Consensus 149 ~s~nv~I~n~~i~~gD-----D~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~-~~--~~~i~nV~~~n~~i~~t-~~ 218 (326)
T PF00295_consen 149 SSKNVTIENCFIDNGD-----DCIAIKSGSGNILVENCTCSGGH-GISIGSEGSG-GS--QNDIRNVTFENCTIINT-DN 218 (326)
T ss_dssp SEEEEEEESEEEESSS-----ESEEESSEECEEEEESEEEESSS-EEEEEEESSS-SE----EEEEEEEEEEEEESE-SE
T ss_pred eeeEEEEEEeeccccc-----CcccccccccceEEEeEEEeccc-cceeeeccCC-cc--ccEEEeEEEEEEEeecc-ce
Confidence 9999999999999975 678887554 9999999998875 5999985321 10 12479999999999987 89
Q ss_pred EEEEecc--ccCCEEEEEEEeeEEeCCCceEEEEEecC---------CCceEEeEEEEEEEEcccc-ccEEEEccCCCCC
Q 020062 175 GVGIGSE--MSGGIFNVTVDQLHVWDAAAGVRIKTDKG---------RGGYIENITIRNIKMERVK-IPIRISRGSNDHP 242 (331)
Q Consensus 175 gi~iGs~--~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g---------~~g~i~nV~f~nI~~~~~~-~~i~i~~~y~~~~ 242 (331)
|++|++. ..|.|+||+|+|++|.+...++.|..... ....|+||+|+||+.+... .++.+...
T Consensus 219 gi~iKt~~~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~----- 293 (326)
T PF00295_consen 219 GIRIKTWPGGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS----- 293 (326)
T ss_dssp EEEEEEETTTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B-----
T ss_pred EEEEEEecccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC-----
Confidence 9999985 35789999999999999999998875311 1258999999999998876 56666542
Q ss_pred CCCCCCCCCCeEeeEEEEEEEEec
Q 020062 243 DEGWDPKALPKIRGISFVNVVSVN 266 (331)
Q Consensus 243 ~~~~~~~~~~~i~nIt~~NI~~~~ 266 (331)
...+++||+|+||.++.
T Consensus 294 -------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 294 -------PGSPCSNITFENVNITG 310 (326)
T ss_dssp -------TTSSEEEEEEEEEEEES
T ss_pred -------CcCcEEeEEEEeEEEEc
Confidence 11369999999999997
No 11
>PLN02218 polygalacturonase ADPG
Probab=99.90 E-value=1.7e-21 Score=189.29 Aligned_cols=204 Identities=19% Similarity=0.172 Sum_probs=163.2
Q ss_pred cceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCC---C-ceEEeEEeeE
Q 020062 23 RHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNS---P-FWTIHPVYCR 98 (331)
Q Consensus 23 ~~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~---~-~~~i~~~~s~ 98 (331)
.+|.+|.+.+|+|++|.|. +|- + ++.| .+++.+|+||+|++|++.++ | ..+|++.+|+
T Consensus 190 ~rP~~i~f~~~~nv~I~gi--tl~-n-Sp~w--------------~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~ 251 (431)
T PLN02218 190 KAPTALTFYNSKSLIVKNL--RVR-N-AQQI--------------QISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQ 251 (431)
T ss_pred cCCEEEEEEccccEEEeCe--EEE-c-CCCE--------------EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccc
Confidence 4688999999999999997 553 2 3334 59999999999999999863 2 3469999999
Q ss_pred cEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEE
Q 020062 99 NVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVG 177 (331)
Q Consensus 99 nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~ 177 (331)
||+|+|++|.++| |.|.+. .|+||+|+||.+..|+ +|+|+|..... .....+||+|+||++... ..|++
T Consensus 252 nV~I~n~~I~tGD-----DcIaIksgs~nI~I~n~~c~~GH-GisIGS~g~~~---~~~~V~nV~v~n~~~~~t-~nGvR 321 (431)
T PLN02218 252 NIRVSNSIIGTGD-----DCISIESGSQNVQINDITCGPGH-GISIGSLGDDN---SKAFVSGVTVDGAKLSGT-DNGVR 321 (431)
T ss_pred eEEEEccEEecCC-----ceEEecCCCceEEEEeEEEECCC-CEEECcCCCCC---CCceEEEEEEEccEEecC-CcceE
Confidence 9999999999986 556666 5899999999998775 69999963211 123589999999999987 89999
Q ss_pred Eeccc--cCCEEEEEEEeeEEeCCCceEEEEEecC---------CCceEEeEEEEEEEEcccc-ccEEEEccCCCCCCCC
Q 020062 178 IGSEM--SGGIFNVTVDQLHVWDAAAGVRIKTDKG---------RGGYIENITIRNIKMERVK-IPIRISRGSNDHPDEG 245 (331)
Q Consensus 178 iGs~~--~g~i~nI~~~n~~i~~~~~gi~Ik~~~g---------~~g~i~nV~f~nI~~~~~~-~~i~i~~~y~~~~~~~ 245 (331)
|++-. .|.++||+|+|++|.++..++.|..... ....|+||+|+||+.+... .++.+...
T Consensus 322 IKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs-------- 393 (431)
T PLN02218 322 IKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCS-------- 393 (431)
T ss_pred EeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEEC--------
Confidence 99863 4689999999999999999998875421 1246999999999998653 45555431
Q ss_pred CCCCCCCeEeeEEEEEEEEec
Q 020062 246 WDPKALPKIRGISFVNVVSVN 266 (331)
Q Consensus 246 ~~~~~~~~i~nIt~~NI~~~~ 266 (331)
...+++||+|+||.++.
T Consensus 394 ----~~~pc~nI~l~nV~i~~ 410 (431)
T PLN02218 394 ----KNYPCQGIVLDNVNIKG 410 (431)
T ss_pred ----CCCCEeeEEEEeEEEEC
Confidence 12479999999999975
No 12
>PLN02155 polygalacturonase
Probab=99.89 E-value=3e-21 Score=185.60 Aligned_cols=204 Identities=18% Similarity=0.159 Sum_probs=162.5
Q ss_pred ceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC----ceEEeEEeeEc
Q 020062 24 HISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP----FWTIHPVYCRN 99 (331)
Q Consensus 24 ~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~----~~~i~~~~s~n 99 (331)
++.+|.+.+|+|++|.|. +|- + ++.| .+++.+|+||+|+++++.++. ..+|++.+|+|
T Consensus 144 ~p~~i~~~~~~nv~i~gi--tl~-n-Sp~w--------------~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~n 205 (394)
T PLN02155 144 GVRSISFNSAKDVIISGV--KSM-N-SQVS--------------HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTG 205 (394)
T ss_pred cccceeEEEeeeEEEECe--EEE-c-CCCe--------------EEEEECeeeEEEEEEEEECCCCCCCCCcccccccee
Confidence 457899999999999997 553 2 3333 599999999999999998743 24699999999
Q ss_pred EEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEE
Q 020062 100 VVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGI 178 (331)
Q Consensus 100 V~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~i 178 (331)
|+|+|++|.++| |.|.+. +|+||+|+||.+..|+ +|+|+|..... .....+||+|+||.+... .+|++|
T Consensus 206 V~I~~~~I~~gD-----DcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~---~~~~V~nV~v~n~~~~~t-~~GirI 275 (394)
T PLN02155 206 VTFTGSTVQTGD-----DCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKEL---NEDGVENVTVSSSVFTGS-QNGVRI 275 (394)
T ss_pred EEEEeeEEecCC-----ceEEcCCCCceEEEEEEEEECCc-eEEeccccccC---CCCcEEEEEEEeeEEeCC-CcEEEE
Confidence 999999999976 567776 5799999999998876 69999952110 124589999999999987 899999
Q ss_pred ecc---ccCCEEEEEEEeeEEeCCCceEEEEEec--C---C-----CceEEeEEEEEEEEcccc-ccEEEEccCCCCCCC
Q 020062 179 GSE---MSGGIFNVTVDQLHVWDAAAGVRIKTDK--G---R-----GGYIENITIRNIKMERVK-IPIRISRGSNDHPDE 244 (331)
Q Consensus 179 Gs~---~~g~i~nI~~~n~~i~~~~~gi~Ik~~~--g---~-----~g~i~nV~f~nI~~~~~~-~~i~i~~~y~~~~~~ 244 (331)
++- ..|.++||+|+|++|.++..++.|.... . . ...|+||+|+||+.+... .++.+...
T Consensus 276 KT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~------- 348 (394)
T PLN02155 276 KSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS------- 348 (394)
T ss_pred EEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC-------
Confidence 983 3578999999999999999999996531 1 1 137999999999998763 45555532
Q ss_pred CCCCCCCCeEeeEEEEEEEEecC
Q 020062 245 GWDPKALPKIRGISFVNVVSVNT 267 (331)
Q Consensus 245 ~~~~~~~~~i~nIt~~NI~~~~~ 267 (331)
...+++||+|+||+++..
T Consensus 349 -----~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 349 -----KSSPCTGITLQDIKLTYN 366 (394)
T ss_pred -----CCCCEEEEEEEeeEEEec
Confidence 123699999999999864
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.89 E-value=4.6e-21 Score=185.05 Aligned_cols=205 Identities=17% Similarity=0.151 Sum_probs=162.7
Q ss_pred cceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC----ceEEeEEeeE
Q 020062 23 RHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP----FWTIHPVYCR 98 (331)
Q Consensus 23 ~~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~----~~~i~~~~s~ 98 (331)
.+|.+|.+.+|+|+.|.|. +|- + +++| .+++..|+||+|+++++.++. ..+|++.+|+
T Consensus 153 ~rP~~i~f~~~~nv~i~gi--tl~-n-Sp~w--------------~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~ 214 (404)
T PLN02188 153 LLPTSVKFVNMNNTVVRGI--TSV-N-SKFF--------------HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSS 214 (404)
T ss_pred cCceEEEEEeeeeEEEeCe--EEE-c-CCCe--------------EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcc
Confidence 3688999999999999997 553 2 3444 599999999999999998643 3469999999
Q ss_pred cEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEE
Q 020062 99 NVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVG 177 (331)
Q Consensus 99 nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~ 177 (331)
||+|.|++|.++| |+|.+. .++||+|+||....++ +|+++|-- .+ .+....+||+|+||++... .+|++
T Consensus 215 nV~I~n~~I~~GD-----DcIaiksg~~nI~I~n~~c~~gh-GisiGSlG-~~--~~~~~V~nV~v~n~~~~~t-~~Gir 284 (404)
T PLN02188 215 GVYISDSRIGTGD-----DCISIGQGNSQVTITRIRCGPGH-GISVGSLG-RY--PNEGDVTGLVVRDCTFTGT-TNGIR 284 (404)
T ss_pred cEEEEeeEEeCCC-----cEEEEccCCccEEEEEEEEcCCC-cEEeCCCC-CC--CcCCcEEEEEEEeeEEECC-CcEEE
Confidence 9999999999976 567775 6789999999998775 69998821 00 1224699999999999987 89999
Q ss_pred Eecc----ccCCEEEEEEEeeEEeCCCceEEEEEec----------CCCceEEeEEEEEEEEcccc-ccEEEEccCCCCC
Q 020062 178 IGSE----MSGGIFNVTVDQLHVWDAAAGVRIKTDK----------GRGGYIENITIRNIKMERVK-IPIRISRGSNDHP 242 (331)
Q Consensus 178 iGs~----~~g~i~nI~~~n~~i~~~~~gi~Ik~~~----------g~~g~i~nV~f~nI~~~~~~-~~i~i~~~y~~~~ 242 (331)
|++. ..|.++||+|+|++|.+...++.|.... .....|+||+|+||+.+... .++.+...
T Consensus 285 iKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~cs----- 359 (404)
T PLN02188 285 IKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCS----- 359 (404)
T ss_pred EEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecCceEEEEEEC-----
Confidence 9874 2467999999999999999999887521 11367999999999998753 45555431
Q ss_pred CCCCCCCCCCeEeeEEEEEEEEecC
Q 020062 243 DEGWDPKALPKIRGISFVNVVSVNT 267 (331)
Q Consensus 243 ~~~~~~~~~~~i~nIt~~NI~~~~~ 267 (331)
...+++||+|+||+++..
T Consensus 360 -------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 360 -------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred -------CCCCEeeEEEEeeEEEec
Confidence 124699999999999754
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.87 E-value=3.4e-20 Score=180.03 Aligned_cols=205 Identities=15% Similarity=0.079 Sum_probs=162.8
Q ss_pred cceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC----ceEEeEEeeE
Q 020062 23 RHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP----FWTIHPVYCR 98 (331)
Q Consensus 23 ~~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~----~~~i~~~~s~ 98 (331)
.+|.+|.+.+|+|+.|.|. ++- + ++.| .+++.+|++|+|+++++.++. ..+|++.+|+
T Consensus 136 ~rP~~l~f~~~~nv~I~gi--tl~-N-Sp~w--------------~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~ 197 (456)
T PLN03003 136 SRPTALKFRSCNNLRLSGL--THL-D-SPMA--------------HIHISECNYVTISSLRINAPESSPNTDGIDVGASS 197 (456)
T ss_pred CCceEEEEEecCCcEEeCe--EEe-c-CCcE--------------EEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcc
Confidence 3678999999999999997 442 2 3334 599999999999999998642 3469999999
Q ss_pred cEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEE
Q 020062 99 NVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVG 177 (331)
Q Consensus 99 nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~ 177 (331)
||+|+|++|.++| |.+.+. .|+||+|+||....++ +|+|+|... ++ .....+||+|+||.+.+. .+|++
T Consensus 198 nV~I~n~~I~tGD-----DCIaiksgs~NI~I~n~~c~~GH-GISIGSlg~-~g--~~~~V~NV~v~n~~~~~T-~nGvR 267 (456)
T PLN03003 198 NVVIQDCIIATGD-----DCIAINSGTSNIHISGIDCGPGH-GISIGSLGK-DG--ETATVENVCVQNCNFRGT-MNGAR 267 (456)
T ss_pred eEEEEecEEecCC-----CeEEeCCCCccEEEEeeEEECCC-CeEEeeccC-CC--CcceEEEEEEEeeEEECC-CcEEE
Confidence 9999999999976 567776 5789999999998875 699998632 21 113589999999999987 89999
Q ss_pred Eeccc--cCCEEEEEEEeeEEeCCCceEEEEEecC------------CCceEEeEEEEEEEEccc-cccEEEEccCCCCC
Q 020062 178 IGSEM--SGGIFNVTVDQLHVWDAAAGVRIKTDKG------------RGGYIENITIRNIKMERV-KIPIRISRGSNDHP 242 (331)
Q Consensus 178 iGs~~--~g~i~nI~~~n~~i~~~~~gi~Ik~~~g------------~~g~i~nV~f~nI~~~~~-~~~i~i~~~y~~~~ 242 (331)
|++-. .|.++||+|+|++|.++..+|.|..... ....|+||+|+||+.+.. +.++.+...
T Consensus 268 IKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs----- 342 (456)
T PLN03003 268 IKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCS----- 342 (456)
T ss_pred EEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeC-----
Confidence 99863 4689999999999999999998854321 124799999999998654 356655431
Q ss_pred CCCCCCCCCCeEeeEEEEEEEEecC
Q 020062 243 DEGWDPKALPKIRGISFVNVVSVNT 267 (331)
Q Consensus 243 ~~~~~~~~~~~i~nIt~~NI~~~~~ 267 (331)
...+.+||+|+||.++..
T Consensus 343 -------~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 343 -------ERVPCTEIFLRDMKIETA 360 (456)
T ss_pred -------CCCCeeeEEEEEEEEEec
Confidence 124699999999998754
No 15
>PLN03010 polygalacturonase
Probab=99.84 E-value=2.7e-18 Score=165.69 Aligned_cols=252 Identities=17% Similarity=0.210 Sum_probs=182.8
Q ss_pred eeEEEec-e--eeeEEEeCCeEEEcCCc-hhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCC---Cce-EEeEEee
Q 020062 26 SLIHGDH-L--TNVIITGYNGTIDGQGQ-MWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNS---PFW-TIHPVYC 97 (331)
Q Consensus 26 ~lI~~~~-~--~nV~I~G~~G~IdG~g~-~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~---~~~-~i~~~~s 97 (331)
.-|.+.+ | .||.|.=. |+|-+... ..|.. ......|.|.+.+|+.|.|--..+. ..| .+.+..|
T Consensus 94 ~~i~l~~pc~~~~v~l~l~-G~l~~~~d~~~w~~-------~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~ 165 (409)
T PLN03010 94 QPIEFKGPCKSTSIKVQLD-GIIVAPSNIVAWSN-------PKSQMWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKC 165 (409)
T ss_pred EeEEecCCCCCCcEEEEEc-cEEEccCChhhccC-------CCCcceEEEecccccEEeeceEEeCCCccccceEEEEee
Confidence 3444554 3 46777765 77765432 22321 1123468899999999999655543 345 4889999
Q ss_pred EcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEE
Q 020062 98 RNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVG 177 (331)
Q Consensus 98 ~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~ 177 (331)
+|++|+++++.+++.. -+++..|+||+|++..|.+..+ ..+.||+++. .++||+|+||++..+ +++|+
T Consensus 166 ~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~------s~NTDGiDi~-~s~nV~I~n~~I~~g-DDcIa 233 (409)
T PLN03010 166 DNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPET------SPNTDGIDIS-YSTNINIFDSTIQTG-DDCIA 233 (409)
T ss_pred cCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCC------CCCCCceeee-ccceEEEEeeEEecC-CCeEE
Confidence 9999999999998632 2778899999999999988432 2466776653 489999999999998 99999
Q ss_pred EeccccCCEEEEEEEeeEEeCCCceEEEEEecC--CCceEEeEEEEEEEEccccccEEEEccCCCCCCCCCCCCCCCeEe
Q 020062 178 IGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKG--RGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIR 255 (331)
Q Consensus 178 iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g--~~g~i~nV~f~nI~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~ 255 (331)
|++. -.|+.|+++.+.. .+|+.|++... ....|+||+|+|+++.+..++++|+.... +.+.++
T Consensus 234 iksg----s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~G~v~ 298 (409)
T PLN03010 234 INSG----SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQGYAR 298 (409)
T ss_pred ecCC----CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CCEEEE
Confidence 9984 3467777777764 48999998732 22569999999999999999999997421 236899
Q ss_pred eEEEEEEEEecCCcceEEEe---cCC---------CCeeeEEEEeEEEEecCCC-------CceEEEeeeeecccc
Q 020062 256 GISFVNVVSVNTTKAPVLAG---IIG---------TQFEEICMKNVSLLGLAPS-------AKWQCQFVSGFTSQV 312 (331)
Q Consensus 256 nIt~~NI~~~~~~~~~~i~g---~~~---------~~i~~I~~~NV~i~~~~~~-------~~~~c~~v~g~~~~~ 312 (331)
||+|+||++.+...|+.|.- ... -.+++|+|+|++-+..... ....|.++.-...++
T Consensus 299 nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l 374 (409)
T PLN03010 299 NISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDV 374 (409)
T ss_pred EeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEE
Confidence 99999999999888877632 211 2579999999998865432 233456665554444
No 16
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.73 E-value=6.8e-16 Score=149.17 Aligned_cols=238 Identities=20% Similarity=0.205 Sum_probs=134.8
Q ss_pred eeeEEEeceeeeEEEeCCeEEEcCCchhhcccccC--------CCCCCCceEEE---EEeeccEEEeceEEeCCCceEEe
Q 020062 25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNR--------TLKHTRGHLVE---LMNSNNILISNLTFRNSPFWTIH 93 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~--------~~~~~rp~~i~---~~~~~nv~i~giti~n~~~~~i~ 93 (331)
.++.+...++|++|+|+ |+|.|....|....... ..+...=+|+. ...+.++.++|++|.++|+|+++
T Consensus 269 GAf~~~~~~~nv~i~G~-GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~ 347 (582)
T PF03718_consen 269 GAFEYTDTQQNVKITGR-GVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMD 347 (582)
T ss_dssp S-EEE---SSEEEEESS-SEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEE
T ss_pred EEEEEccCCceEEEEee-EEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEE
Confidence 35555568999999999 99998766653321111 00111224565 45566999999999999999999
Q ss_pred EEeeE----cEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEe
Q 020062 94 PVYCR----NVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGT 169 (331)
Q Consensus 94 ~~~s~----nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~ 169 (331)
+.+-+ +..|+|.++.... ..|+||+.+. ++-+|+|||+++.||+|.+. -+++.|+||++|
T Consensus 348 l~g~~~~~~~~~i~nyKqVGaW-~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlY-------------hS~v~v~~~ViW 411 (582)
T PF03718_consen 348 LYGNENDKFSMNISNYKQVGAW-YFQTDGIELY--PNSTIRDCFIHVNDDAIKLY-------------HSNVSVSNTVIW 411 (582)
T ss_dssp EESSSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE---------------STTEEEEEEEEE
T ss_pred ecCCccccccceeeceeeeeeE-EeccCCcccc--CCCeeeeeEEEecCchhhee-------------ecCcceeeeEEE
Confidence 98655 4899999999765 5799999996 66688999999999988665 278999999999
Q ss_pred CCC-CCEEEEeccccCCEEEEEEEeeEEeCCC---------ceEEEEEec----CC------CceEEeEEEEEEEEcccc
Q 020062 170 TPT-CSGVGIGSEMSGGIFNVTVDQLHVWDAA---------AGVRIKTDK----GR------GGYIENITIRNIKMERVK 229 (331)
Q Consensus 170 ~~~-~~gi~iGs~~~g~i~nI~~~n~~i~~~~---------~gi~Ik~~~----g~------~g~i~nV~f~nI~~~~~~ 229 (331)
... +.-+.+|.. ...++||+|+|+.+.++. .+|---+.. +. .-.|++++|+|+++|+.-
T Consensus 412 k~~Ngpiiq~GW~-pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~ 490 (582)
T PF03718_consen 412 KNENGPIIQWGWT-PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMC 490 (582)
T ss_dssp E-SSS-SEE--CS----EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE
T ss_pred ecCCCCeEEeecc-ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEeccc
Confidence 751 223566654 457999999999998772 344322211 10 136899999999999964
Q ss_pred -ccEEEEccCCCCCCCCCCCCCCCeEeeEEEEEEEEe--c---CCc-ceEE---Eec---CCCCeeeEEEEeEEEEec
Q 020062 230 -IPIRISRGSNDHPDEGWDPKALPKIRGISFVNVVSV--N---TTK-APVL---AGI---IGTQFEEICMKNVSLLGL 294 (331)
Q Consensus 230 -~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~--~---~~~-~~~i---~g~---~~~~i~~I~~~NV~i~~~ 294 (331)
..+.|.. ..-.+|+.++|+.+. . -+. ...+ .+. ......+|.|+|.++.++
T Consensus 491 ~~l~ri~p--------------lqn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 491 PCLFRIYP--------------LQNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp -ECEEE----------------SEEEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred ceeEEEee--------------cCCCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 3444432 123555555555544 1 111 1111 111 123579999999999875
No 17
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=3.7e-15 Score=147.07 Aligned_cols=157 Identities=23% Similarity=0.355 Sum_probs=130.3
Q ss_pred cceeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCc---eEEeEEeeEc
Q 020062 23 RHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPF---WTIHPVYCRN 99 (331)
Q Consensus 23 ~~~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~---~~i~~~~s~n 99 (331)
.|+.++.+.+|+||.+.|. .+.. .+|| .+|+..|+|++++|+++.+... .++++.+|+|
T Consensus 236 ~rp~~~~l~~c~NV~~~g~-~i~n---s~~~--------------~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~sc~N 297 (542)
T COG5434 236 VRPRTVVLKGCRNVLLEGL-NIKN---SPLW--------------TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGSCSN 297 (542)
T ss_pred cCCceEEEeccceEEEeee-EecC---CCcE--------------EEeeecccCceecceEEECCCCCCCCcccccccee
Confidence 5789999999999999998 5542 3445 5999999999999999985433 3699999999
Q ss_pred EEEEeEEEECCCC------CCCCCcc-ccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 100 VVIKGMTILAPLN------APNTDGI-DPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 100 V~i~n~~i~~~~~------~~n~DGi-~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
|+|++++|.++|| +...|+- ...++++|+|+||++..++..+.++++ +.+..+||+++||.+...
T Consensus 298 vlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse-------~~ggv~ni~ved~~~~~~- 369 (542)
T COG5434 298 VLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE-------MGGGVQNITVEDCVMDNT- 369 (542)
T ss_pred EEEeccEEecCCceEEeecccCCcccccccccccEEEecceecccccceEeeee-------cCCceeEEEEEeeeeccC-
Confidence 9999999999987 3334432 334899999999999999999999886 456799999999999986
Q ss_pred CCEEEEeccc--cCCEEEEEEEeeEEeCCCceEEE
Q 020062 173 CSGVGIGSEM--SGGIFNVTVDQLHVWDAAAGVRI 205 (331)
Q Consensus 173 ~~gi~iGs~~--~g~i~nI~~~n~~i~~~~~gi~I 205 (331)
+.||+|++.. .|.++||+|++..+.+....+.|
T Consensus 370 d~GLRikt~~~~gG~v~nI~~~~~~~~nv~t~~~i 404 (542)
T COG5434 370 DRGLRIKTNDGRGGGVRNIVFEDNKMRNVKTKLSI 404 (542)
T ss_pred cceeeeeeecccceeEEEEEEecccccCcccceee
Confidence 9999999863 57899999999999887533333
No 18
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.21 E-value=7.6e-10 Score=104.37 Aligned_cols=177 Identities=22% Similarity=0.222 Sum_probs=129.1
Q ss_pred cCCCcce--eeEEEeceeeeEEEeCCe----EEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEE
Q 020062 19 RLGGRHI--SLIHGDHLTNVIITGYNG----TIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTI 92 (331)
Q Consensus 19 ~~~~~~~--~lI~~~~~~nV~I~G~~G----~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i 92 (331)
+|.+.|. .-|... .++|+|.|. | +||+.++.- ....| +..+++|+|+++++.++..++|
T Consensus 16 l~~G~Y~~~~~l~I~-~~~Iti~G~-g~~~tvid~~~~~~------------~~~~i-~v~a~~VtI~~ltI~~~~~~GI 80 (314)
T TIGR03805 16 LPEGVFQFDRTLSLD-ADGVTIRGA-GMDETILDFSGQVG------------GAEGL-LVTSDDVTLSDLAVENTKGDGV 80 (314)
T ss_pred ECCCEEEcceeEEEe-CCCeEEEec-CCCccEEecccCCC------------CCceE-EEEeCCeEEEeeEEEcCCCCeE
Confidence 3444454 445454 379999997 5 477766421 11234 4468999999999999999999
Q ss_pred eEEeeEcEEEEeEEEECCCC---CCCCCccccCCCccEEEEeeEEeeC-CceEEEccCCCccCcccCCCcccEEEEEEEE
Q 020062 93 HPVYCRNVVIKGMTILAPLN---APNTDGIDPDSSTNVCIEDCYIESG-DDLVAVKSGWDHYGIAMARPSSNIIVRRVSG 168 (331)
Q Consensus 93 ~~~~s~nV~i~n~~i~~~~~---~~n~DGi~~~~s~nV~I~n~~i~~g-DD~iai~s~~~~~g~~~~~~~~nI~i~nc~~ 168 (331)
.+..|++++|+++++..... ....+||.+..|++++|++|+++.. |++|.++. ++|++|+|+++
T Consensus 81 ~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~------------s~~~~v~nN~~ 148 (314)
T TIGR03805 81 KVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ------------SQNIVVRNNVA 148 (314)
T ss_pred EEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC------------CCCeEEECCEE
Confidence 99999999999999974321 1246899999999999999999985 45777664 78999999999
Q ss_pred eCCCCCEEEEeccccCCEEEEEEEeeEEeCCCceEEEEEecCCC-ceEEeEEEEEEEEccc
Q 020062 169 TTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRG-GYIENITIRNIKMERV 228 (331)
Q Consensus 169 ~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~-g~i~nV~f~nI~~~~~ 228 (331)
+.. ..||.+-. ..++.++|.++.+...|+.+...++.. ..-+++++++-++.+.
T Consensus 149 ~~n-~~GI~i~~-----S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 149 EEN-VAGIEIEN-----SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred ccC-cceEEEEe-----cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 876 77887742 367788888888877888886655321 2236677776666543
No 19
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.11 E-value=2.8e-09 Score=102.69 Aligned_cols=156 Identities=21% Similarity=0.169 Sum_probs=115.1
Q ss_pred eeeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEe
Q 020062 25 ISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKG 104 (331)
Q Consensus 25 ~~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n 104 (331)
.++|...+++||+|+|. +|+|+|..| ..||.+|++..|++++|++.+|.++..|+|.+..|+ ..|.+
T Consensus 106 ~~lIiai~A~nVTIsGL--tIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~-~~I~~ 172 (455)
T TIGR03808 106 PSLLSSEGADGIGLSGL--TLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVS-GDISG 172 (455)
T ss_pred ceEEEEecCCCeEEEee--EEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCc-ceEec
Confidence 78899999999999997 999999765 347889999999999999999999999999999999 55555
Q ss_pred EEEECCCCCCCCCccccCCCccEEEEeeEEee-CCceEEEccC-----------------------CCccCcccC-CCcc
Q 020062 105 MTILAPLNAPNTDGIDPDSSTNVCIEDCYIES-GDDLVAVKSG-----------------------WDHYGIAMA-RPSS 159 (331)
Q Consensus 105 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s~-----------------------~~~~g~~~~-~~~~ 159 (331)
-+|.... ..+|++..+++++|++..|.. .|++|.+... +.+.|-.+. ..+.
T Consensus 173 N~I~g~~----~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~ 248 (455)
T TIGR03808 173 NTITQIA----VTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAG 248 (455)
T ss_pred ceEeccc----cceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccC
Confidence 5555432 345888888888888888886 5767766521 133331111 2468
Q ss_pred cEEEEEEEEeCCCC-CEEEEeccccCCEEEEEEEeeEEeCCCc-eE
Q 020062 160 NIIVRRVSGTTPTC-SGVGIGSEMSGGIFNVTVDQLHVWDAAA-GV 203 (331)
Q Consensus 160 nI~i~nc~~~~~~~-~gi~iGs~~~g~i~nI~~~n~~i~~~~~-gi 203 (331)
+++|++.++... . +||.+-+ .+|+.|++.++.+... |+
T Consensus 249 ~v~V~gN~I~~~-r~dgI~~ns-----ss~~~i~~N~~~~~R~~al 288 (455)
T TIGR03808 249 NVIVRGNRIRNC-DYSAVRGNS-----ASNIQITGNSVSDVREVAL 288 (455)
T ss_pred CeEEECCEEecc-ccceEEEEc-----ccCcEEECcEeeeeeeeEE
Confidence 888888888765 5 7888764 3555555555555544 44
No 20
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.89 E-value=2.1e-08 Score=89.87 Aligned_cols=162 Identities=17% Similarity=0.182 Sum_probs=104.4
Q ss_pred eceeeeEEEeCCeEEEc-CCchhhcccccC-CCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEE
Q 020062 31 DHLTNVIITGYNGTIDG-QGQMWWDLWWNR-TLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTIL 108 (331)
Q Consensus 31 ~~~~nV~I~G~~G~IdG-~g~~~w~~~~~~-~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~ 108 (331)
..++++.|+.- -.-.+ +...|+...-.. ......|.+ |+.|++++++++++.+++-. +..|++|+++|+++.
T Consensus 55 Wh~~~~~i~~~-~f~~~aRa~iWYs~~i~m~d~~i~apK~--fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~ 128 (277)
T PF12541_consen 55 WHSDNIKIENC-YFTEMARAAIWYSNNITMKDSVIQAPKM--FRECSNITLENVDIPDADET---LWNCRGIKLKNVQAN 128 (277)
T ss_pred EEECCeEEEee-EEeecceeeeeEeCCEEEEeeeccCchH--hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEe
Confidence 34456777766 22233 334465432111 111234444 67899999999999877632 346777777777774
Q ss_pred CCCCCCC-----CCc------cccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEE
Q 020062 109 APLNAPN-----TDG------IDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVG 177 (331)
Q Consensus 109 ~~~~~~n-----~DG------i~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~ 177 (331)
+...+.+ -|| ..+..++||.|+|+.+.+.|. + | .++||+|.|+.+.+. .
T Consensus 129 gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKDA-F-----W---------n~eNVtVyDS~i~GE-----Y 188 (277)
T PF12541_consen 129 GDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKDA-F-----W---------NCENVTVYDSVINGE-----Y 188 (277)
T ss_pred ceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEecccc-c-----c---------cCCceEEEcceEeee-----E
Confidence 3211111 122 233578999999999999863 1 2 489999999998654 3
Q ss_pred EeccccCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccE
Q 020062 178 IGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPI 232 (331)
Q Consensus 178 iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i 232 (331)
+|. .-+||++.||++.+.+ | --+++|++++|.+|.+...++
T Consensus 189 LgW----~SkNltliNC~I~g~Q-p---------LCY~~~L~l~nC~~~~tdlaF 229 (277)
T PF12541_consen 189 LGW----NSKNLTLINCTIEGTQ-P---------LCYCDNLVLENCTMIDTDLAF 229 (277)
T ss_pred EEE----EcCCeEEEEeEEeccC-c---------cEeecceEEeCcEeecceeee
Confidence 443 3589999999998874 2 246799999999999876655
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.81 E-value=7.7e-07 Score=84.04 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=123.1
Q ss_pred ceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEe-------CCCceEEeEEeeEcEEEEe
Q 020062 32 HLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFR-------NSPFWTIHPVYCRNVVIKG 104 (331)
Q Consensus 32 ~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~-------n~~~~~i~~~~s~nV~i~n 104 (331)
.+++|+|+|. +|...+ ...|.+.+|++++|+++++. ....++|.+..|++++|++
T Consensus 61 ~a~~VtI~~l--tI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~ 122 (314)
T TIGR03805 61 TSDDVTLSDL--AVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVED 122 (314)
T ss_pred EeCCeEEEee--EEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEEC
Confidence 3577888876 553221 12588899999999999996 1346789999999999999
Q ss_pred EEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEecccc-
Q 020062 105 MTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMS- 183 (331)
Q Consensus 105 ~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~- 183 (331)
+++.... .+||.+..|++++|+++.++....+|-+.. +.++.|++..+... ..|+.+-+...
T Consensus 123 n~i~g~~----d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~------------S~~~~v~~N~~~~N-~~Gi~v~~~p~~ 185 (314)
T TIGR03805 123 SYVRGAS----DAGIYVGQSQNIVVRNNVAEENVAGIEIEN------------SQNADVYNNIATNN-TGGILVFDLPGL 185 (314)
T ss_pred CEEECCC----cccEEECCCCCeEEECCEEccCcceEEEEe------------cCCcEEECCEEecc-ceeEEEeecCCC
Confidence 9998742 359999999999999999998777776653 67899999998876 67888844321
Q ss_pred --CCEEEEEEEeeEEeCCCc------eEEEEEecCCCceE----EeEEEEEEEEcccc-ccEEEE
Q 020062 184 --GGIFNVTVDQLHVWDAAA------GVRIKTDKGRGGYI----ENITIRNIKMERVK-IPIRIS 235 (331)
Q Consensus 184 --g~i~nI~~~n~~i~~~~~------gi~Ik~~~g~~g~i----~nV~f~nI~~~~~~-~~i~i~ 235 (331)
...++++|++.++.+... |-.+...+...|.+ ++++++|-++++.. .++.+.
T Consensus 186 ~~~~s~~~~v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 186 PQPGGSNVRVFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred CcCCccceEEECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 235799999998886631 11121222233544 89999999999876 456554
No 22
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.75 E-value=2.5e-07 Score=83.02 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=94.6
Q ss_pred EeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEEC
Q 020062 30 GDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILA 109 (331)
Q Consensus 30 ~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~~ 109 (331)
|..|+||+|... .|.-..+..|....-.-.....-.--.+.+|+|+.++|+++.. .-.|.+|+||.|+|.++.+
T Consensus 94 fR~~~~i~L~nv--~~~~A~Et~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~s 167 (277)
T PF12541_consen 94 FRECSNITLENV--DIPDADETLWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDS 167 (277)
T ss_pred hhcccCcEEEee--EeCCCcccCEEeCCeEEEeEEEeceEeeeeccceEEeceEEeC----CEEeeceeeEEEEccEEec
Confidence 446778888876 6632345566543210000000001335568888888888864 3558899999999999998
Q ss_pred CCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEE
Q 020062 110 PLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNV 189 (331)
Q Consensus 110 ~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI 189 (331)
.| . +..|+||+|.|++|..- -+ +..++|+++.||++.+. .|+. .+.|+
T Consensus 168 KD------A--FWn~eNVtVyDS~i~GE----YL-----------gW~SkNltliNC~I~g~--QpLC-------Y~~~L 215 (277)
T PF12541_consen 168 KD------A--FWNCENVTVYDSVINGE----YL-----------GWNSKNLTLINCTIEGT--QPLC-------YCDNL 215 (277)
T ss_pred cc------c--cccCCceEEEcceEeee----EE-----------EEEcCCeEEEEeEEecc--CccE-------eecce
Confidence 54 2 45799999999999652 11 12489999999999875 4443 58999
Q ss_pred EEEeeEEeCCCceEEE
Q 020062 190 TVDQLHVWDAAAGVRI 205 (331)
Q Consensus 190 ~~~n~~i~~~~~gi~I 205 (331)
+++||+|.+++.++.-
T Consensus 216 ~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 216 VLENCTMIDTDLAFEY 231 (277)
T ss_pred EEeCcEeecceeeeee
Confidence 9999999988766644
No 23
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.58 E-value=4.2e-07 Score=75.81 Aligned_cols=140 Identities=24% Similarity=0.250 Sum_probs=97.8
Q ss_pred EEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCC
Q 020062 69 VELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWD 148 (331)
Q Consensus 69 i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~ 148 (331)
|.+....+++|++.+|.+....++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+.
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~---- 73 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS---- 73 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC----
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE----
Confidence 67788899999999999999999999999999999999997 357899988899999999999876443333
Q ss_pred ccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCCC-ceEEEEEecCCCceEEeEEEEEEEEcc
Q 020062 149 HYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAA-AGVRIKTDKGRGGYIENITIRNIKMER 227 (331)
Q Consensus 149 ~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~-~gi~Ik~~~g~~g~i~nV~f~nI~~~~ 227 (331)
...+++|++|.+......||.+.. ..++++|+++++.+.. .|+.+.... -.+++|++.++.+
T Consensus 74 --------~~~~~~i~~~~i~~~~~~gi~~~~----~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~ 136 (158)
T PF13229_consen 74 --------GSSNITIENNRIENNGDYGIYISN----SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISN 136 (158)
T ss_dssp --------S-CS-EEES-EEECSSS-SCE-TC----EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEEC
T ss_pred --------ecCCceecCcEEEcCCCccEEEec----cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEe
Confidence 378899999999887445888753 2567999999999876 677776542 2466777777776
Q ss_pred cc-ccEEE
Q 020062 228 VK-IPIRI 234 (331)
Q Consensus 228 ~~-~~i~i 234 (331)
.. .++.+
T Consensus 137 ~~~~gi~~ 144 (158)
T PF13229_consen 137 NGGNGIYL 144 (158)
T ss_dssp ESSEEEE-
T ss_pred CcceeEEE
Confidence 54 55543
No 24
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.46 E-value=6.5e-06 Score=79.74 Aligned_cols=169 Identities=21% Similarity=0.148 Sum_probs=115.9
Q ss_pred cCCCcce-eeEEEeceeeeEEEeCCeE----EEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC-----
Q 020062 19 RLGGRHI-SLIHGDHLTNVIITGYNGT----IDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP----- 88 (331)
Q Consensus 19 ~~~~~~~-~lI~~~~~~nV~I~G~~G~----IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~----- 88 (331)
+|...|. .-|.+. ++++|.|..|. |+|. ..++.-...++|+|+|++|.++.
T Consensus 73 Lp~G~Y~~G~L~L~--spltL~G~~gAt~~vIdG~-----------------~~lIiai~A~nVTIsGLtIdGsG~dl~~ 133 (455)
T TIGR03808 73 LPPGVYRTGPLRLP--SGAQLIGVRGATRLVFTGG-----------------PSLLSSEGADGIGLSGLTLDGGGIPLPQ 133 (455)
T ss_pred ECCCceecccEEEC--CCcEEEecCCcEEEEEcCC-----------------ceEEEEecCCCeEEEeeEEEeCCCcccC
Confidence 4444552 555566 57888887554 5543 12566777999999999998765
Q ss_pred -ceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEee-CCceEEEccCCCccCcccCCCcccEEEEEE
Q 020062 89 -FWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIES-GDDLVAVKSGWDHYGIAMARPSSNIIVRRV 166 (331)
Q Consensus 89 -~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s~~~~~g~~~~~~~~nI~i~nc 166 (331)
...|.+..|++++|++++|..+. .-||.+..|+ ..|.+..|.. .+.. |.+. .+++..|++.
T Consensus 134 rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~--I~lw----------~S~g~~V~~N 196 (455)
T TIGR03808 134 RRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA--IVSF----------DALGLIVARN 196 (455)
T ss_pred CCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce--EEEe----------ccCCCEEECC
Confidence 23588999999999999999741 3689999888 6777777765 4444 4442 3788999999
Q ss_pred EEeCCCCCEEEEecc-------------------------ccC------CEEEEEEEeeEEeCCC-ceEEEEEecCCCce
Q 020062 167 SGTTPTCSGVGIGSE-------------------------MSG------GIFNVTVDQLHVWDAA-AGVRIKTDKGRGGY 214 (331)
Q Consensus 167 ~~~~~~~~gi~iGs~-------------------------~~g------~i~nI~~~n~~i~~~~-~gi~Ik~~~g~~g~ 214 (331)
++....+.||.|.-. ..| ...++++++.++.+++ .|+++.+.
T Consensus 197 ~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r~dgI~~nss------ 270 (455)
T TIGR03808 197 TIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCDYSAVRGNSA------ 270 (455)
T ss_pred EEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccccceEEEEcc------
Confidence 998775666665411 001 1366888888888887 78888665
Q ss_pred EEeEEEEEEEEccccc
Q 020062 215 IENITIRNIKMERVKI 230 (331)
Q Consensus 215 i~nV~f~nI~~~~~~~ 230 (331)
+|+.|++.++++.++
T Consensus 271 -s~~~i~~N~~~~~R~ 285 (455)
T TIGR03808 271 -SNIQITGNSVSDVRE 285 (455)
T ss_pred -cCcEEECcEeeeeee
Confidence 445555555555544
No 25
>smart00656 Amb_all Amb_all domain.
Probab=98.30 E-value=1.6e-05 Score=69.72 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=70.8
Q ss_pred EEeEEeeEcEEEEeEEEECCCC--CCCCCccccCCCccEEEEeeEEeeC----------CceEEEccCCCccCcccCCCc
Q 020062 91 TIHPVYCRNVVIKGMTILAPLN--APNTDGIDPDSSTNVCIEDCYIESG----------DDLVAVKSGWDHYGIAMARPS 158 (331)
Q Consensus 91 ~i~~~~s~nV~i~n~~i~~~~~--~~n~DGi~~~~s~nV~I~n~~i~~g----------DD~iai~s~~~~~g~~~~~~~ 158 (331)
.+.+..++||.|+|++|..... ..+.|+|.+..+++|.|++|.|..+ |..+.++. .+
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~-----------~s 101 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKN-----------GS 101 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECc-----------cc
Confidence 3444456677777777776532 2367899998899999999999986 34444444 47
Q ss_pred ccEEEEEEEEeCCCCCEEEEeccc---cCCEEEEEEEeeEEeCC
Q 020062 159 SNIIVRRVSGTTPTCSGVGIGSEM---SGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 159 ~nI~i~nc~~~~~~~~gi~iGs~~---~g~i~nI~~~n~~i~~~ 199 (331)
.+|+|++|.|... +-++-+|+.. .....+|++.++.+.+.
T Consensus 102 ~~vTvs~~~f~~h-~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 102 TYVTISNNYFHNH-WKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ccEEEECceEecC-CEEEEEccCCCccccccceEEEECcEEcCc
Confidence 9999999999765 7888888742 22345899999988775
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.29 E-value=7.4e-06 Score=68.18 Aligned_cols=142 Identities=27% Similarity=0.274 Sum_probs=94.6
Q ss_pred EEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEE
Q 020062 28 IHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTI 107 (331)
Q Consensus 28 I~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i 107 (331)
|.+.+..+++|.+- +|...+ ...|.+..+..++|++.++.+ ...++.+....+++++++++
T Consensus 3 i~i~~~~~~~i~~~--~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~ 63 (158)
T PF13229_consen 3 ISINNGSNVTIRNC--TISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTI 63 (158)
T ss_dssp EEETTCEC-EEESE--EEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EE
T ss_pred EEEECCcCeEEeee--EEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEE
Confidence 45667777888884 665431 125888888889999999998 66678888889999999999
Q ss_pred ECCCCCCCCCccccCCCccEEEEeeEEeeCC-ceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCE
Q 020062 108 LAPLNAPNTDGIDPDSSTNVCIEDCYIESGD-DLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGI 186 (331)
Q Consensus 108 ~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gD-D~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i 186 (331)
.... .|+.+..+.+++|++|.|.... .+|.+.. ...+++|++|++......|+.+.... -
T Consensus 64 ~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~-----------~~~~~~i~~n~~~~~~~~gi~~~~~~---~ 124 (158)
T PF13229_consen 64 SDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISN-----------SSSNVTIENNTIHNNGGSGIYLEGGS---S 124 (158)
T ss_dssp ES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TC-----------EECS-EEES-EEECCTTSSCEEEECC----
T ss_pred EEcc-----ceEEEEecCCceecCcEEEcCCCccEEEec-----------cCCCEEEEeEEEEeCcceeEEEECCC---C
Confidence 9742 6888889999999999999853 3666653 15789999999988756888876432 3
Q ss_pred EEEEEEeeEEeCCC-ceEEEEE
Q 020062 187 FNVTVDQLHVWDAA-AGVRIKT 207 (331)
Q Consensus 187 ~nI~~~n~~i~~~~-~gi~Ik~ 207 (331)
.+++|+++++.+.. .|+.+..
T Consensus 125 ~~~~i~~n~i~~~~~~gi~~~~ 146 (158)
T PF13229_consen 125 PNVTIENNTISNNGGNGIYLIS 146 (158)
T ss_dssp -S-EEECEEEECESSEEEE-TT
T ss_pred CeEEEEEEEEEeCcceeEEEEC
Confidence 57888888888764 6666643
No 27
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.26 E-value=1.3e-05 Score=78.66 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=110.0
Q ss_pred EeeccEEEeceEEeCCC----------------------------ceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCC
Q 020062 72 MNSNNILISNLTFRNSP----------------------------FWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDS 123 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~----------------------------~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~ 123 (331)
..++|++|.|--+++.. .|++....++++++++++|..++. + .+++.+
T Consensus 275 ~~~~nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~--~--Sm~l~g 350 (582)
T PF03718_consen 275 DTQQNVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPF--H--SMDLYG 350 (582)
T ss_dssp --SSEEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-----SEEEES
T ss_pred cCCceEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCc--c--eEEecC
Confidence 48899998885554321 234556788899999999999863 2 366663
Q ss_pred Cc----cEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCC
Q 020062 124 ST----NVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 124 s~----nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~ 199 (331)
.+ +..|+|-.+...- ..+.||+. ..+|=+|+||.++.. +++|++- -+++.++||++...
T Consensus 351 ~~~~~~~~~i~nyKqVGaW-------~~qtDGi~---ly~nS~i~dcF~h~n-DD~iKlY------hS~v~v~~~ViWk~ 413 (582)
T PF03718_consen 351 NENDKFSMNISNYKQVGAW-------YFQTDGIE---LYPNSTIRDCFIHVN-DDAIKLY------HSNVSVSNTVIWKN 413 (582)
T ss_dssp SSGGGEEEEEEEEEEE----------CTT----B-----TT-EEEEEEEEES-S-SEE--------STTEEEEEEEEEE-
T ss_pred CccccccceeeceeeeeeE-------EeccCCcc---ccCCCeeeeeEEEec-Cchhhee------ecCcceeeeEEEec
Confidence 33 4778887775411 12233433 246788999999886 8999774 37899999999987
Q ss_pred CceEEEEEecCCCceEEeEEEEEEEEccccc---------cEEEE-ccCCCCCCCCCCCCCCCeEeeEEEEEEEEecCCc
Q 020062 200 AAGVRIKTDKGRGGYIENITIRNIKMERVKI---------PIRIS-RGSNDHPDEGWDPKALPKIRGISFVNVVSVNTTK 269 (331)
Q Consensus 200 ~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~---------~i~i~-~~y~~~~~~~~~~~~~~~i~nIt~~NI~~~~~~~ 269 (331)
.+|--|..-. ....++||+|+|+.+-..+. +|.-. -+|....... .....-.||+++|+||++++.-.
T Consensus 414 ~Ngpiiq~GW-~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~-~adp~~ti~~~~~~nv~~EG~~~ 491 (582)
T PF03718_consen 414 ENGPIIQWGW-TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTK-TADPSTTIRNMTFSNVRCEGMCP 491 (582)
T ss_dssp SSS-SEE--C-S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS---BEEEEEEEEEEEEEEEEECCE-
T ss_pred CCCCeEEeec-cccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCC-CCCcccceeeEEEEeEEEecccc
Confidence 6654443222 24679999999999865421 23222 1342211110 01111269999999999997532
Q ss_pred -ceEEEecCCCCeeeEEEEeEEEEe
Q 020062 270 -APVLAGIIGTQFEEICMKNVSLLG 293 (331)
Q Consensus 270 -~~~i~g~~~~~i~~I~~~NV~i~~ 293 (331)
..+| .|...-+++.++||.+..
T Consensus 492 ~l~ri--~plqn~~nl~ikN~~~~~ 514 (582)
T PF03718_consen 492 CLFRI--YPLQNYDNLVIKNVHFES 514 (582)
T ss_dssp ECEEE----SEEEEEEEEEEEEECE
T ss_pred eeEEE--eecCCCcceEEEEeeccc
Confidence 2334 456677888899999884
No 28
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.22 E-value=5.5e-05 Score=68.31 Aligned_cols=137 Identities=24% Similarity=0.139 Sum_probs=97.8
Q ss_pred eeEEEeceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeE
Q 020062 26 SLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGM 105 (331)
Q Consensus 26 ~lI~~~~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~ 105 (331)
.=|++.+.+++.|.+. ++.... ..|.+..+.+++|++.++.+. ..+|++..|++++|++.
T Consensus 14 ~Gi~l~~~~~~~i~~n--~i~~~~-----------------~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n 73 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENN--TISNSR-----------------DGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENN 73 (236)
T ss_pred CcEEEEeCCCCEEEcC--EEEeCC-----------------CEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeE
Confidence 3455666677777664 443211 136778888888888888876 67788888888888888
Q ss_pred EEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCC
Q 020062 106 TILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGG 185 (331)
Q Consensus 106 ~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~ 185 (331)
++... ..|+.+..+.+.+|+++.|.....+|.+.. +.+.+|+++.+... ..||.+...
T Consensus 74 ~i~~n-----~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~------------s~~~~I~~N~i~~~-~~GI~l~~s---- 131 (236)
T PF05048_consen 74 TISNN-----GYGIYLMGSSNNTISNNTISNNGYGIYLYG------------SSNNTISNNTISNN-GYGIYLSSS---- 131 (236)
T ss_pred EEEcc-----CCCEEEEcCCCcEEECCEecCCCceEEEee------------CCceEEECcEEeCC-CEEEEEEeC----
Confidence 88863 478888877777888888887666776664 46677888888743 778877532
Q ss_pred EEEEEEEeeEEeCC-CceEEE
Q 020062 186 IFNVTVDQLHVWDA-AAGVRI 205 (331)
Q Consensus 186 i~nI~~~n~~i~~~-~~gi~I 205 (331)
.+.++++.++.+. ..|+.+
T Consensus 132 -~~n~I~~N~i~~n~~~Gi~~ 151 (236)
T PF05048_consen 132 -SNNTITGNTISNNTDYGIYF 151 (236)
T ss_pred -CCCEEECeEEeCCCccceEE
Confidence 6677777777776 677773
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.11 E-value=9.7e-05 Score=66.70 Aligned_cols=135 Identities=24% Similarity=0.136 Sum_probs=106.4
Q ss_pred EEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCC
Q 020062 68 LVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGW 147 (331)
Q Consensus 68 ~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~ 147 (331)
-|.+..+++..|++.++.+.. -++.+..+.+++|++.+|... ..|+++..+++++|+++.+.....+|.+..
T Consensus 15 Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-- 86 (236)
T PF05048_consen 15 GIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG-- 86 (236)
T ss_pred cEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc--
Confidence 488889999999999997654 467899999999999999974 679999999999999999999778888886
Q ss_pred CccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEcc
Q 020062 148 DHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMER 227 (331)
Q Consensus 148 ~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~ 227 (331)
+.+.+|+++.+... ..||.+.. ..+.++++.++.+...|+.+... .+.++++-++.+
T Consensus 87 ----------s~~~~I~~N~i~~n-~~GI~l~~-----s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~ 143 (236)
T PF05048_consen 87 ----------SSNNTISNNTISNN-GYGIYLYG-----SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISN 143 (236)
T ss_pred ----------CCCcEEECCEecCC-CceEEEee-----CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeC
Confidence 35559999999876 55887753 35577888888877788888643 444455555555
Q ss_pred c-cccEE
Q 020062 228 V-KIPIR 233 (331)
Q Consensus 228 ~-~~~i~ 233 (331)
. ..++.
T Consensus 144 n~~~Gi~ 150 (236)
T PF05048_consen 144 NTDYGIY 150 (236)
T ss_pred CCccceE
Confidence 4 56666
No 30
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00013 Score=67.04 Aligned_cols=128 Identities=19% Similarity=0.159 Sum_probs=93.6
Q ss_pred EEEEEeeccEEEeceEEe-CCCceEEeEEeeEcEEEEeEEEECCCC-CCCCCcccc-CCCccEEEEeeEEeeCCceEEEc
Q 020062 68 LVELMNSNNILISNLTFR-NSPFWTIHPVYCRNVVIKGMTILAPLN-APNTDGIDP-DSSTNVCIEDCYIESGDDLVAVK 144 (331)
Q Consensus 68 ~i~~~~~~nv~i~giti~-n~~~~~i~~~~s~nV~i~n~~i~~~~~-~~n~DGi~~-~~s~nV~I~n~~i~~gDD~iai~ 144 (331)
.+.+.-|.|.+|.|+--. .--.|++.+....||.|+|++|..... -++-|+|.+ .+++|+.|++|.|..+--. .
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~---~ 170 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYN---A 170 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEecccccc---c
Confidence 388888999999987632 223678999999999999999986541 234589999 6999999999999973211 1
Q ss_pred cCCCccC-cccCCCcccEEEEEEEEeCCCCCEEEEecccc----CCEEEEEEEeeEEeCC
Q 020062 145 SGWDHYG-IAMARPSSNIIVRRVSGTTPTCSGVGIGSEMS----GGIFNVTVDQLHVWDA 199 (331)
Q Consensus 145 s~~~~~g-~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~----g~i~nI~~~n~~i~~~ 199 (331)
++...|| .++...+..|+|++|.+... +-++-+|+-.. +.-.+|+++++.+.+.
T Consensus 171 ~~~h~DGl~Dik~~AnyITiS~n~fhdh-~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 171 SGSHGDGLVDIKKDANYITISYNKFHDH-DKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred cccCCCccEEeccCCcEEEEEeeeeecC-CeeeeeccCCcccccCCceeEEEeccccccc
Confidence 1112222 23345689999999999876 78888887532 3457799998888876
No 31
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.90 E-value=0.00087 Score=61.63 Aligned_cols=122 Identities=19% Similarity=0.145 Sum_probs=90.1
Q ss_pred eEEEeceeeeEEEeCCe---EEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC-----ceEEeE-Eee
Q 020062 27 LIHGDHLTNVIITGYNG---TIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP-----FWTIHP-VYC 97 (331)
Q Consensus 27 lI~~~~~~nV~I~G~~G---~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~-----~~~i~~-~~s 97 (331)
++....+.|++|.|. | +|-|- -+.+....||.|++|+|.... ...|.+ ...
T Consensus 94 k~~iki~sNkTivG~-g~~a~~~g~-------------------gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~ 153 (345)
T COG3866 94 KITIKIGSNKTIVGS-GADATLVGG-------------------GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDG 153 (345)
T ss_pred eEEEeeccccEEEee-ccccEEEec-------------------eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCC
Confidence 488888899999998 5 45432 377778999999999998765 345777 889
Q ss_pred EcEEEEeEEEECCCC---CCCCCcc-ccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCC
Q 020062 98 RNVVIKGMTILAPLN---APNTDGI-DPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTP 171 (331)
Q Consensus 98 ~nV~i~n~~i~~~~~---~~n~DGi-~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~ 171 (331)
+|+.|+++++..+.. ....||. |+. .+.+|+|.+|+|...|-+.-+++...++ ....-.+|++.+|.|.+.
T Consensus 154 ~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~---~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 154 HNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSN---YDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred eEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCccc---ccCCceeEEEeccccccc
Confidence 999999999998532 2235554 665 7899999999999988777676642211 112357799999988654
No 32
>smart00656 Amb_all Amb_all domain.
Probab=97.85 E-value=0.00058 Score=59.86 Aligned_cols=144 Identities=16% Similarity=0.063 Sum_probs=95.7
Q ss_pred EEEEEeeccEEEeceEEeCCCc------eEEeEEeeEcEEEEeEEEECCC----CCCCCCcc-ccC-CCccEEEEeeEEe
Q 020062 68 LVELMNSNNILISNLTFRNSPF------WTIHPVYCRNVVIKGMTILAPL----NAPNTDGI-DPD-SSTNVCIEDCYIE 135 (331)
Q Consensus 68 ~i~~~~~~nv~i~giti~n~~~------~~i~~~~s~nV~i~n~~i~~~~----~~~n~DGi-~~~-~s~nV~I~n~~i~ 135 (331)
-|.+..++||.|++|++++... .+|.+..+++|.|++|++.... ...-.||+ ++. .+.+|+|.+|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3777779999999999997643 4788999999999999999751 01114554 544 6899999999998
Q ss_pred eCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCceEEEEEecCCCceE
Q 020062 136 SGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYI 215 (331)
Q Consensus 136 ~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i 215 (331)
..+-+..++++.... .....+|++.++.+.....+.-++.. | .+++.|..+.+.. +..+....+..-.+
T Consensus 113 ~h~~~~liG~~d~~~----~~~~~~vT~h~N~~~~~~~R~P~~r~---g---~~hv~NN~~~n~~-~~~~~~~~~~~v~~ 181 (190)
T smart00656 113 NHWKVMLLGHSDSDT----DDGKMRVTIAHNYFGNLRQRAPRVRF---G---YVHVYNNYYTGWT-SYAIGGRMGATILS 181 (190)
T ss_pred cCCEEEEEccCCCcc----ccccceEEEECcEEcCcccCCCcccC---C---EEEEEeeEEeCcc-cEeEecCCCcEEEE
Confidence 766667777642211 01135799999988654455444432 2 5788888777763 33343333223455
Q ss_pred EeEEEEE
Q 020062 216 ENITIRN 222 (331)
Q Consensus 216 ~nV~f~n 222 (331)
++=.|++
T Consensus 182 E~N~F~~ 188 (190)
T smart00656 182 EGNYFEA 188 (190)
T ss_pred ECeEEEC
Confidence 6656654
No 33
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.79 E-value=0.0011 Score=58.71 Aligned_cols=122 Identities=26% Similarity=0.261 Sum_probs=72.9
Q ss_pred EeceEEeCCC------ceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCc
Q 020062 79 ISNLTFRNSP------FWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGI 152 (331)
Q Consensus 79 i~giti~n~~------~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~ 152 (331)
|+++++.... .-.+.+..++++.|+||++.+. +.+|+.+..++...+.+..... .+.+..+
T Consensus 96 i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~------ 162 (225)
T PF12708_consen 96 IRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHVS---GIFIDNG------ 162 (225)
T ss_dssp EEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEEE---EEEEESC------
T ss_pred EEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccce---eeeeccc------
Confidence 6666664322 2357777788888888888763 3566666544444444443321 2223221
Q ss_pred ccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEeeEEeC-CCceEEEEEecCCCceEEeEEEEEEEEcccccc
Q 020062 153 AMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWD-AAAGVRIKTDKGRGGYIENITIRNIKMERVKIP 231 (331)
Q Consensus 153 ~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~-~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~ 231 (331)
..++.+.||.+... ..|+..++ ++++++||.+.. ...|+.+... .+++++|++++++..+
T Consensus 163 -----~~~~~~~~~~~~~~-~~g~~~~~------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g 223 (225)
T PF12708_consen 163 -----SNNVIVNNCIFNGG-DNGIILGN------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDG 223 (225)
T ss_dssp -----EEEEEEECEEEESS-SCSEECEE------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEE
T ss_pred -----eeEEEECCccccCC-CceeEeec------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccC
Confidence 35577778877766 56644433 788889998887 5677877654 2367777777766554
Q ss_pred E
Q 020062 232 I 232 (331)
Q Consensus 232 i 232 (331)
|
T Consensus 224 ~ 224 (225)
T PF12708_consen 224 I 224 (225)
T ss_dssp E
T ss_pred c
Confidence 3
No 34
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.79 E-value=5.4e-05 Score=66.90 Aligned_cols=91 Identities=25% Similarity=0.342 Sum_probs=55.5
Q ss_pred eeEcEEEEeEEEECC-----------CCCCCCCccccCCCccEEEEeeEEeeC---------CceEEEccCCCccCcccC
Q 020062 96 YCRNVVIKGMTILAP-----------LNAPNTDGIDPDSSTNVCIEDCYIESG---------DDLVAVKSGWDHYGIAMA 155 (331)
Q Consensus 96 ~s~nV~i~n~~i~~~-----------~~~~n~DGi~~~~s~nV~I~n~~i~~g---------DD~iai~s~~~~~g~~~~ 155 (331)
.++||.|+|++|... ......|++.+..++||.|++|.+..+ |..+.++.
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~---------- 113 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKK---------- 113 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEES----------
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEe----------
Confidence 555555555555541 112456888888888999999988876 33344443
Q ss_pred CCcccEEEEEEEEeCCCCCEEEEecc----ccCCEEEEEEEeeEEeCC
Q 020062 156 RPSSNIIVRRVSGTTPTCSGVGIGSE----MSGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 156 ~~~~nI~i~nc~~~~~~~~gi~iGs~----~~g~i~nI~~~n~~i~~~ 199 (331)
.+.+|+|++|.|... ..+..+|+. .... .+|+|..+.+.++
T Consensus 114 -~s~~vTiS~n~f~~~-~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 114 -GSDNVTISNNIFDNH-NKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp -STEEEEEES-EEEEE-EETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred -CCceEEEEchhcccc-ccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 478999999998764 455567764 1233 8888888887654
No 35
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.70 E-value=0.0014 Score=58.03 Aligned_cols=112 Identities=23% Similarity=0.290 Sum_probs=76.6
Q ss_pred ceEEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEc
Q 020062 66 GHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVK 144 (331)
Q Consensus 66 p~~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~ 144 (331)
...+++..++++.|+++++.+....++.+..+....+.+..... ++.+. ++.++.+.+|.+..+++++...
T Consensus 112 ~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 183 (225)
T PF12708_consen 112 NNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG 183 (225)
T ss_dssp EEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE
T ss_pred ceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee
Confidence 35789999999999999999987777777755554443322221 12222 3477888999999988873222
Q ss_pred cCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCceE
Q 020062 145 SGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGV 203 (331)
Q Consensus 145 s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi 203 (331)
.++++|+||.+......||.+-... +++++|+++.+...|+
T Consensus 184 -------------~~~~~i~n~~~~~~~~~gi~i~~~~-----~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 184 -------------NNNITISNNTFEGNCGNGINIEGGS-----NIIISNNTIENCDDGI 224 (225)
T ss_dssp -------------EEEEEEECEEEESSSSESEEEEECS-----EEEEEEEEEESSSEEE
T ss_pred -------------cceEEEEeEEECCccceeEEEECCe-----EEEEEeEEEECCccCc
Confidence 3789999999987448899886542 3677777777766665
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.26 E-value=0.0018 Score=57.15 Aligned_cols=95 Identities=22% Similarity=0.189 Sum_probs=63.6
Q ss_pred EeeccEEEeceEEeCC---------------CceEEeEEeeEcEEEEeEEEECCCC---CCCCCc-cccC-CCccEEEEe
Q 020062 72 MNSNNILISNLTFRNS---------------PFWTIHPVYCRNVVIKGMTILAPLN---APNTDG-IDPD-SSTNVCIED 131 (331)
Q Consensus 72 ~~~~nv~i~giti~n~---------------~~~~i~~~~s~nV~i~n~~i~~~~~---~~n~DG-i~~~-~s~nV~I~n 131 (331)
.+++||.|++|+++.. ....+.+..+++|.|++|++..... ....|| +++. .+++|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 5899999999999982 2335889999999999999998621 111565 4665 689999999
Q ss_pred eEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeC
Q 020062 132 CYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTT 170 (331)
Q Consensus 132 ~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~ 170 (331)
|.|...+.+..+++... . ..... .+|++-++.+..
T Consensus 123 n~f~~~~k~~l~G~~d~-~--~~~~~-~~vT~hhN~f~~ 157 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDS-N--STDRG-LRVTFHHNYFAN 157 (200)
T ss_dssp -EEEEEEETCEESSCTT-C--GGGTT-EEEEEES-EEEE
T ss_pred hhccccccccccCCCCC-c--cccCC-ceEEEEeEEECc
Confidence 99998666555655311 1 11223 788888887743
No 37
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.34 Score=45.65 Aligned_cols=55 Identities=22% Similarity=0.149 Sum_probs=44.5
Q ss_pred EEeEEeeEcEEEEeEEEECCCC---CCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 91 TIHPVYCRNVVIKGMTILAPLN---APNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 91 ~i~~~~s~nV~i~n~~i~~~~~---~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
+|.+..+.++.|+..+|....+ .....|+.+..+.+++|....|+-+.|||-.+.
T Consensus 122 Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~ 179 (408)
T COG3420 122 GIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT 179 (408)
T ss_pred EEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc
Confidence 4778888899999999987554 234678999999999999999998999887765
No 38
>PLN02480 Probable pectinesterase
Probab=96.03 E-value=0.66 Score=44.36 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=73.9
Q ss_pred EeeccEEEeceEEeCCCc---------eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceE
Q 020062 72 MNSNNILISNLTFRNSPF---------WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLV 141 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~---------~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 141 (331)
...++++++||+|+|+.. ..+.+ ...+.+.+.||+|....| -+-. ....-..+||+|...=|-|
T Consensus 129 V~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QD-----TLy~-~~gR~yf~~C~IeG~VDFI 202 (343)
T PLN02480 129 VEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHN-----TLFD-YKGRHYYHSCYIQGSIDFI 202 (343)
T ss_pred EECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccc-----eeEe-CCCCEEEEeCEEEeeeeEE
Confidence 346788888888888721 23333 456778888888876433 2322 1234577788887644432
Q ss_pred EEccCCCccCcccCCCcccEEEEEEEEeCCCC------CEEEEeccccCCEEEEEEEeeEEeCCCceEEEE-EecCCCce
Q 020062 142 AVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC------SGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGGY 214 (331)
Q Consensus 142 ai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~------~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g~ 214 (331)
++ .-...|++|.+..... ..|.-.+.....-.-..|.||++.... ...+. .| +.
T Consensus 203 -FG-------------~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~g-~~yLGRPW----~~ 263 (343)
T PLN02480 203 -FG-------------RGRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGIG-EVYLGRAK----GA 263 (343)
T ss_pred -cc-------------ceeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEcccC-ceeeecCC----CC
Confidence 22 2347788887764311 123322222222345777888876542 22232 11 33
Q ss_pred EEeEEEEEEEEcccccc
Q 020062 215 IENITIRNIKMERVKIP 231 (331)
Q Consensus 215 i~nV~f~nI~~~~~~~~ 231 (331)
-..+.|.|..|.+.-.|
T Consensus 264 ya~vVf~~t~l~~~I~p 280 (343)
T PLN02480 264 YSRVIFAKTYLSKTIVP 280 (343)
T ss_pred cceEEEEecccCCeEcC
Confidence 56777777777664333
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=94.57 E-value=0.48 Score=44.67 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=17.5
Q ss_pred cccCCCCCCcccccCCCcceeeEEEeceeeeEEEe
Q 020062 6 IIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITG 40 (331)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~lI~~~~~~nV~I~G 40 (331)
+|.++.-|+.|+.+|+.. ........+..-.|+.
T Consensus 80 ~v~Gl~vr~sg~~lp~m~-agI~v~~~at~A~Vr~ 113 (408)
T COG3420 80 IVEGLTVRGSGRSLPAMD-AGIFVGRTATGAVVRH 113 (408)
T ss_pred eeeeEEEecCCCCccccc-ceEEeccCcccceEEc
Confidence 455666777777777642 2333333333333333
No 40
>PLN02773 pectinesterase
Probab=93.68 E-value=3.8 Score=38.81 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=79.5
Q ss_pred EEEeeccEEEeceEEeCCCce----EEe-EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEc
Q 020062 70 ELMNSNNILISNLTFRNSPFW----TIH-PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVK 144 (331)
Q Consensus 70 ~~~~~~nv~i~giti~n~~~~----~i~-~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~ 144 (331)
.+..++++.+++|||.|...- .+- ....+.+.+.||+|....| -+-.. .....++||+|...=|-| ++
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD-----TL~~~-~gr~yf~~c~IeG~VDFI-FG 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD-----TLYLH-YGKQYLRDCYIEGSVDFI-FG 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc-----eeEeC-CCCEEEEeeEEeecccEE-ee
Confidence 344578999999999887421 222 2346788888888887543 33322 235688888887754533 33
Q ss_pred cCCCccCcccCCCcccEEEEEEEEeCCCCCE-EEEeccc-cCCEEEEEEEeeEEeCCCc--eEEEE-EecCCCceEEeEE
Q 020062 145 SGWDHYGIAMARPSSNIIVRRVSGTTPTCSG-VGIGSEM-SGGIFNVTVDQLHVWDAAA--GVRIK-TDKGRGGYIENIT 219 (331)
Q Consensus 145 s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~g-i~iGs~~-~g~i~nI~~~n~~i~~~~~--gi~Ik-~~~g~~g~i~nV~ 219 (331)
. -...|++|.+... ..| |..-+.. ...-.-..|.||++..... -.++. .| +.-..+.
T Consensus 170 ~-------------g~a~Fe~c~i~s~-~~g~ITA~~r~~~~~~~GfvF~~c~it~~~~~~~~yLGRpW----~~~a~vV 231 (317)
T PLN02773 170 N-------------STALLEHCHIHCK-SAGFITAQSRKSSQESTGYVFLRCVITGNGGSGYMYLGRPW----GPFGRVV 231 (317)
T ss_pred c-------------cEEEEEeeEEEEc-cCcEEECCCCCCCCCCceEEEEccEEecCCCCcceeecCCC----CCCceEE
Confidence 2 3478888888754 333 2222211 1122457888888876532 12222 11 3346778
Q ss_pred EEEEEEcccccc
Q 020062 220 IRNIKMERVKIP 231 (331)
Q Consensus 220 f~nI~~~~~~~~ 231 (331)
|.|..|.+.-.|
T Consensus 232 f~~t~l~~~I~p 243 (317)
T PLN02773 232 FAYTYMDACIRP 243 (317)
T ss_pred EEecccCCeEcc
Confidence 888887765333
No 41
>PLN02773 pectinesterase
Probab=92.92 E-value=2.5 Score=40.04 Aligned_cols=114 Identities=9% Similarity=0.081 Sum_probs=73.9
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
...++++..+|++|.|.........+.+. .+..+.+.||.|...-|.+-.+. ..-.++||++.+..
T Consensus 98 ~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~-------------gr~yf~~c~IeG~V 164 (317)
T PLN02773 98 IVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY-------------GKQYLRDCYIEGSV 164 (317)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC-------------CCEEEEeeEEeecc
Confidence 44678999999999997432222233332 57999999999999888766553 34889999998762
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCceEEEEEecCC-CceEEeEEEEEEEEcccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGR-GGYIENITIRNIKMERVK 229 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~-~g~i~nV~f~nI~~~~~~ 229 (331)
+ +=+|. -...|++|++.....| .|...... ...-....|.|.+++...
T Consensus 165 -D-FIFG~------g~a~Fe~c~i~s~~~g-~ITA~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 165 -D-FIFGN------STALLEHCHIHCKSAG-FITAQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred -c-EEeec------cEEEEEeeEEEEccCc-EEECCCCCCCCCCceEEEEccEEecCC
Confidence 2 33343 4578999998765443 34322111 111235779999998753
No 42
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=91.63 E-value=4.8 Score=38.96 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=58.8
Q ss_pred ccEEEeceEEeCCC-ceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcc
Q 020062 75 NNILISNLTFRNSP-FWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIA 153 (331)
Q Consensus 75 ~nv~i~giti~n~~-~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~ 153 (331)
.+|++.++.+...+ .-.+.+..-.++++.+|.+.+-. |.-+.......|+.|.|..---+| .+
T Consensus 121 ~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf~------g~cl~~~~~~~VrGC~F~~C~~gi--~~-------- 184 (386)
T PF01696_consen 121 EGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGFH------GTCLESWAGGEVRGCTFYGCWKGI--VS-------- 184 (386)
T ss_pred eeeEEEEEEEecCCccceeEEEecceEEEEeeEEecCc------ceeEEEcCCcEEeeeEEEEEEEEe--ec--------
Confidence 46777777777665 55666777778888888888632 334444466788888886643333 22
Q ss_pred cCCCcccEEEEEEEEeCCCCCEEEEeccccCCEEEEEEEe
Q 020062 154 MARPSSNIIVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQ 193 (331)
Q Consensus 154 ~~~~~~nI~i~nc~~~~~~~~gi~iGs~~~g~i~nI~~~n 193 (331)
.+...+.|++|.|.. --|.|-+++...+++=.+.|
T Consensus 185 --~~~~~lsVk~C~Fek---C~igi~s~G~~~i~hn~~~e 219 (386)
T PF01696_consen 185 --RGKSKLSVKKCVFEK---CVIGIVSEGPARIRHNCASE 219 (386)
T ss_pred --CCcceEEeeheeeeh---eEEEEEecCCeEEecceecc
Confidence 235677788887753 23445444444444333333
No 43
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=91.35 E-value=9.8 Score=38.74 Aligned_cols=133 Identities=10% Similarity=0.067 Sum_probs=69.0
Q ss_pred EEeeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 71 LMNSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
....+++..+||+|+|.... .+-+ ...+.+.+.+|+|....| -+-.. ...-..+||+|...=|-| ++.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD-----TLy~~-~~rqyy~~C~I~GtVDFI-FG~ 387 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD-----TLYAH-SLRQFYRECEIYGTIDFI-FGN 387 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc-----cceec-CCceEEEeeEEecccceE-ccC
Confidence 34567888888888876421 2222 346677777777776432 23222 233577777776644432 222
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCCC-----CEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-EecCCCceEEeE
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGGYIENI 218 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g~i~nV 218 (331)
-...++||.+..... ..|.--+. ....-.-+.|.||++.... ..+++ .| +.-..+
T Consensus 388 -------------a~avfq~C~i~~r~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~-~~yLGRPW----~~~sr~ 449 (537)
T PLN02506 388 -------------GAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSYVLATQ-PTYLGRPW----KQYSRT 449 (537)
T ss_pred -------------ceeEEeccEEEEccCCCCCCceEEccCCCCCCCCcEEEEEcCEEccCC-ceEEecCC----CCCceE
Confidence 337777777754211 12222111 1122345777777776532 22332 11 234566
Q ss_pred EEEEEEEccc
Q 020062 219 TIRNIKMERV 228 (331)
Q Consensus 219 ~f~nI~~~~~ 228 (331)
.|-+..|.+.
T Consensus 450 v~~~t~l~~~ 459 (537)
T PLN02506 450 VFMNTYMSQL 459 (537)
T ss_pred EEEecCCCCe
Confidence 6666666654
No 44
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=90.79 E-value=13 Score=37.67 Aligned_cols=136 Identities=9% Similarity=0.041 Sum_probs=75.0
Q ss_pred EEeeccEEEeceEEeCCCce----EEe-EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 71 LMNSNNILISNLTFRNSPFW----TIH-PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~~----~i~-~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
....+++..+||+|+|...- .+. ....+...+.+|+|....| -+-.. +..-..++|+|...=|-| ++.
T Consensus 309 ~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG~ 381 (529)
T PLN02170 309 AAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD-----SLYTH-SKRQFYRETDITGTVDFI-FGN 381 (529)
T ss_pred EEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC-----cceeC-CCCEEEEeeEEcccccee-ccc
Confidence 44578888888888887431 222 2346778888888887533 33322 334577888887654433 222
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCCC----CEEEEec-cccCCEEEEEEEeeEEeCCCceEEEE-EecCCCceEEeEE
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPTC----SGVGIGS-EMSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGGYIENIT 219 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~~----~gi~iGs-~~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g~i~nV~ 219 (331)
-...++||.+..... .-|..-+ .....-.-+.|.||++.... ..+++ .| ..-..+.
T Consensus 382 -------------a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~-~~yLGRPW----~~ysrvV 443 (529)
T PLN02170 382 -------------SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES-MTYLGRPW----KEYSRTV 443 (529)
T ss_pred -------------ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC-ceeeeCCC----CCCceEE
Confidence 347788887754311 1122211 11122356788888887653 22222 11 2345677
Q ss_pred EEEEEEcccccc
Q 020062 220 IRNIKMERVKIP 231 (331)
Q Consensus 220 f~nI~~~~~~~~ 231 (331)
|.+..|.+.-.|
T Consensus 444 f~~t~l~~~I~p 455 (529)
T PLN02170 444 VMQSFIDGSIHP 455 (529)
T ss_pred EEecccCCeecc
Confidence 777777664333
No 45
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=90.64 E-value=13 Score=38.22 Aligned_cols=136 Identities=12% Similarity=0.095 Sum_probs=70.2
Q ss_pred eeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCC
Q 020062 73 NSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGW 147 (331)
Q Consensus 73 ~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~ 147 (331)
..+++..++++|+|...- .+-+ ...+...+.+|+|....| -+-.. +..-..+||+|...=|-| ++
T Consensus 343 ~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD-----TLy~~-~~rq~y~~C~I~GtvDFI-FG--- 412 (565)
T PLN02468 343 FGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD-----TLYAH-AQRQFYRECNIYGTVDFI-FG--- 412 (565)
T ss_pred ECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc-----hhccC-CCceEEEeeEEeccccee-ec---
Confidence 457788888888776432 2222 356677777888776432 23332 233467777776644432 22
Q ss_pred CccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEEEecCCC-ceEEeEEE
Q 020062 148 DHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIKTDKGRG-GYIENITI 220 (331)
Q Consensus 148 ~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~-g~i~nV~f 220 (331)
.-...++||.+.... ...|..-+. ....-.-+.|.||++......-..+++=|+. ..-..+.|
T Consensus 413 ----------~a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~ 482 (565)
T PLN02468 413 ----------NSAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVI 482 (565)
T ss_pred ----------cceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCCCccccceeeecCCCCCceEEE
Confidence 234777777775321 122322211 1223345777888777653211122221221 23445666
Q ss_pred EEEEEccc
Q 020062 221 RNIKMERV 228 (331)
Q Consensus 221 ~nI~~~~~ 228 (331)
.+..|.+.
T Consensus 483 ~~s~~~~~ 490 (565)
T PLN02468 483 MHSMMGSL 490 (565)
T ss_pred EecccCCe
Confidence 66666654
No 46
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=90.28 E-value=3.7 Score=37.39 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=47.6
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEee-CCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIES-GDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
+....+.+|++++|.++.. ...-|+.+.++ +.+|+||.|.. ..++|.+.... ......++.|++..++..
T Consensus 93 I~~~~~~~i~GvtItN~n~-~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~------~~~~i~~~vI~GN~~~~~- 163 (246)
T PF07602_consen 93 IILANNATISGVTITNPNI-ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTS------ANPGINGNVISGNSIYFN- 163 (246)
T ss_pred EEecCCCEEEEEEEEcCCC-CcceEEEEecC-CcEEEeeEEECCccccEEEEeee------cCCcccceEeecceEEec-
Confidence 3444555666666666421 11224555433 56666666654 23344442210 012356666666666554
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCceEEE
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRI 205 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~gi~I 205 (331)
..||++-....+ +.| .++|..+.+...|+.+
T Consensus 164 ~~Gi~i~~~~~~-~~n-~I~NN~I~~N~~Gi~~ 194 (246)
T PF07602_consen 164 KTGISISDNAAP-VEN-KIENNIIENNNIGIVA 194 (246)
T ss_pred CcCeEEEcccCC-ccc-eeeccEEEeCCcCeEe
Confidence 566666533222 222 3355555544445543
No 47
>PLN02682 pectinesterase family protein
Probab=90.12 E-value=19 Score=34.86 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=67.6
Q ss_pred EEeeccEEEeceEEeCCCce---------EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCce
Q 020062 71 LMNSNNILISNLTFRNSPFW---------TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDL 140 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~~---------~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ 140 (331)
....+++..+||+|.|+..+ .+-+ ...+...+.||+|....| -+-. ....-..+||+|...=|-
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD-----TLy~-~~gRqyf~~C~IeG~VDF 232 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD-----TLYD-HLGRHYFKDCYIEGSVDF 232 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc-----ceEE-CCCCEEEEeeEEcccccE
Confidence 34467888888888876421 2222 345667777777776432 2222 123456777777654443
Q ss_pred EEEccCCCccCcccCCCcccEEEEEEEEeCCCC--CEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-EecCCCceEE
Q 020062 141 VAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC--SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGGYIE 216 (331)
Q Consensus 141 iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~--~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g~i~ 216 (331)
| ++. -...+++|.+..... ..|...+. ....-.-..|.||++.... .++++ .| ..-.
T Consensus 233 I-FG~-------------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRpW----~~ya 293 (369)
T PLN02682 233 I-FGN-------------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGSG-ALYLGRAW----GTFS 293 (369)
T ss_pred E-ecC-------------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCCC-ceEeecCC----CCcc
Confidence 2 222 346677777653211 12222221 1112245667777776542 22222 11 2345
Q ss_pred eEEEEEEEEccccc
Q 020062 217 NITIRNIKMERVKI 230 (331)
Q Consensus 217 nV~f~nI~~~~~~~ 230 (331)
.|.|.|..|.+.-.
T Consensus 294 rvVf~~t~m~~~I~ 307 (369)
T PLN02682 294 RVVFAYTYMDNIII 307 (369)
T ss_pred eEEEEeccCCCcCc
Confidence 66677766666433
No 48
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=89.73 E-value=25 Score=36.27 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=77.5
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|+|... ..+-+ ..++...+.+|+|....| -+-.. ...-..+||+|...=|-| ++.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQD-----TLYAQ-THRQFYRSCVITGTIDFI-FGD- 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeeccc-----ccccC-CCcEEEEeeEEEeeccEE-ecc-
Confidence 357888888888888642 22222 456778888888887543 23332 334678888887654532 332
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEE----EEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVR----IKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~----Ik~~~g~~-g~i 215 (331)
-...++||.+.... ...|.-.+. ....-.-+.|.||++........ .+++=|+. ..-
T Consensus 441 ------------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 508 (596)
T PLN02745 441 ------------AAAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEF 508 (596)
T ss_pred ------------eeEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCccccccccccceeccCCCCCC
Confidence 44788888876421 122222221 11233567888888876532111 12222222 335
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|.+..|.+.-.|
T Consensus 509 srvv~~~s~l~~~I~p 524 (596)
T PLN02745 509 SRTIVMESTIEDVIDP 524 (596)
T ss_pred ccEEEEecccCCeEcc
Confidence 6677777777664333
No 49
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=89.38 E-value=20 Score=36.58 Aligned_cols=140 Identities=12% Similarity=0.113 Sum_probs=78.1
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|.|... ..+-+ ...+...+.+|+|....| -+-.. +..-..+||+|...=|-| ++.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 380 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQD-----TLMVH-SQRQFYRECYIYGTVDFI-FGN- 380 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccc-----hhccC-CCceEEEeeEEeeccceE-ecc-
Confidence 457888889999988753 22332 346778888888887543 33332 234578888887654533 332
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCC-----CEEEEecc-ccCCEEEEEEEeeEEeCCCceE----EEEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGV----RIKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi----~Ik~~~g~~-g~i 215 (331)
-...++||.+..... .-|.-.+. ....-.-+.|.||++....... ..+++=|+. ..-
T Consensus 381 ------------a~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 448 (539)
T PLN02995 381 ------------AAAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKF 448 (539)
T ss_pred ------------cceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 347788887764310 11222221 1123356888888887753211 112222222 334
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|-+..|.+.-.|
T Consensus 449 srvv~~~t~~~~~I~p 464 (539)
T PLN02995 449 SRTVVLQTYLDNVVSP 464 (539)
T ss_pred cceEEEeccccCcccc
Confidence 5677777777765444
No 50
>PLN02480 Probable pectinesterase
Probab=89.37 E-value=7.9 Score=37.10 Aligned_cols=114 Identities=10% Similarity=0.019 Sum_probs=70.1
Q ss_pred EEeeEcEEEEeEEEECCCCC-----CCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEE
Q 020062 94 PVYCRNVVIKGMTILAPLNA-----PNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVS 167 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~ 167 (331)
....++++++||+|.|.... ....++.+. .++++.++||.|...-|-+-... ..-.++||+
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~C~ 194 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK-------------GRHYYHSCY 194 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC-------------CCEEEEeCE
Confidence 33557899999999997321 112344442 58899999999999777654333 347889999
Q ss_pred EeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCc-----eEEEEEecCCCceEEeEEEEEEEEccc
Q 020062 168 GTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAA-----GVRIKTDKGRGGYIENITIRNIKMERV 228 (331)
Q Consensus 168 ~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~-----gi~Ik~~~g~~g~i~nV~f~nI~~~~~ 228 (331)
+.+. -+ +=+|. -...|+||++.-... .-.|.........-....|.|.++...
T Consensus 195 IeG~-VD-FIFG~------g~a~fe~C~i~s~~~~~~~~~G~ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 195 IQGS-ID-FIFGR------GRSIFHNCEIFVIADRRVKIYGSITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred EEee-ee-EEccc------eeEEEEccEEEEecCCCCCCceEEEcCCCCCCCCCEEEEECCEEccc
Confidence 8765 11 22332 467889998875421 112433211112224567888888763
No 51
>PLN02916 pectinesterase family protein
Probab=89.05 E-value=24 Score=35.58 Aligned_cols=141 Identities=11% Similarity=0.077 Sum_probs=70.4
Q ss_pred EEeeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 71 LMNSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
....+++..++|+|.|...- .+-+ ..++...+.+|+|....| -+-.. +..-..+||+|...=|-| ++
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG- 344 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD-----TLFVH-SLRQFYRDCHIYGTIDFI-FG- 344 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc-----eeEeC-CCCEEEEecEEeccccee-cc-
Confidence 34467788888888776321 2222 345667777777776432 23222 233566777776644432 22
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceE----EEEEecCCC-ce
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGV----RIKTDKGRG-GY 214 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi----~Ik~~~g~~-g~ 214 (331)
.-...++||.+.... ...|.-.+. ....-.-+.|.||++....... ..+++=|+. ..
T Consensus 345 ------------~a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~~~~~~~~g~~~~yLGRPW~~ 412 (502)
T PLN02916 345 ------------DAAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRASPEFEAVKGRFKSFLGRPWKK 412 (502)
T ss_pred ------------CceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCC
Confidence 234677777765421 112222221 1122356777777776642110 011111111 23
Q ss_pred EEeEEEEEEEEcccccc
Q 020062 215 IENITIRNIKMERVKIP 231 (331)
Q Consensus 215 i~nV~f~nI~~~~~~~~ 231 (331)
-..+.|.+..|.+.-.|
T Consensus 413 ysrvVf~~t~~~~~I~p 429 (502)
T PLN02916 413 YSRTVFLKTDLDGLIDP 429 (502)
T ss_pred CceEEEEecccCCeEcC
Confidence 45667777666664333
No 52
>PLN02314 pectinesterase
Probab=88.99 E-value=17 Score=37.44 Aligned_cols=136 Identities=10% Similarity=0.081 Sum_probs=68.0
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|.|... ..+-+ ...+...+.+|+|.... |-+-.. +..-..+||+|...=|-| ++
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~rq~y~~C~I~GtvDFI-FG-- 432 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQ-----DTLYAH-SNRQFYRDCDITGTIDFI-FG-- 432 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEecc-----chheeC-CCCEEEEeeEEEecccee-cc--
Confidence 346778888888877642 12222 34566777777777643 223222 233567777776644432 22
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEEEecCCC-ceEEeEE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIKTDKGRG-GYIENIT 219 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~-g~i~nV~ 219 (331)
--...++||.+.... ...|.--+. ....-.-+.|.||++..... +..+++=|+. ..-..+.
T Consensus 433 -----------~a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v 500 (586)
T PLN02314 433 -----------NAAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTV 500 (586)
T ss_pred -----------CceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCCc-ccccccccCCCCCCceEE
Confidence 234677777765421 112222221 11233456777777766531 1112221221 2344566
Q ss_pred EEEEEEccc
Q 020062 220 IRNIKMERV 228 (331)
Q Consensus 220 f~nI~~~~~ 228 (331)
|.+-.|.+.
T Consensus 501 ~~~s~i~~~ 509 (586)
T PLN02314 501 IMQSYIGSF 509 (586)
T ss_pred EEecccCCc
Confidence 666666654
No 53
>PLN02634 probable pectinesterase
Probab=88.82 E-value=23 Score=34.11 Aligned_cols=131 Identities=11% Similarity=0.153 Sum_probs=67.3
Q ss_pred eeccEEEeceEEeCCCc---------eEEe-EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEE
Q 020062 73 NSNNILISNLTFRNSPF---------WTIH-PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVA 142 (331)
Q Consensus 73 ~~~nv~i~giti~n~~~---------~~i~-~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~ia 142 (331)
..+++..++|+|+|... ..+- ....+...+.+|+|....| -+-. ....-..+||+|...=|-|
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QD-----TL~~-~~gR~yf~~CyIeG~VDFI- 219 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD-----TLCD-DAGRHYFKECYIEGSIDFI- 219 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccc-----eeee-CCCCEEEEeeEEcccccEE-
Confidence 45778888888887632 1121 2345667777777776432 2222 1234567777776544432
Q ss_pred EccCCCccCcccCCCcccEEEEEEEEeCCCC--CEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-EecCCCceEEeE
Q 020062 143 VKSGWDHYGIAMARPSSNIIVRRVSGTTPTC--SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGGYIENI 218 (331)
Q Consensus 143 i~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~--~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g~i~nV 218 (331)
++. -...++||.+..... ..|..-+. ....-.-..|.||++.... .+.++ .| +.-..|
T Consensus 220 FG~-------------g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~g-~~yLGRPW----~~yarv 281 (359)
T PLN02634 220 FGN-------------GRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTG-PLYVGRAM----GQYSRI 281 (359)
T ss_pred cCC-------------ceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCCc-ceEecCCC----CCcceE
Confidence 222 235677777764311 11222211 1122345677777776542 22222 11 234567
Q ss_pred EEEEEEEccc
Q 020062 219 TIRNIKMERV 228 (331)
Q Consensus 219 ~f~nI~~~~~ 228 (331)
.|.+..|.+.
T Consensus 282 Vf~~t~l~~~ 291 (359)
T PLN02634 282 VYAYTYFDAV 291 (359)
T ss_pred EEEecccCCE
Confidence 7777766664
No 54
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=88.79 E-value=21 Score=37.25 Aligned_cols=140 Identities=11% Similarity=0.097 Sum_probs=84.7
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..+||+|+|... ..+-+ ...+...+.+|+|.... |-+-.. ...-..++|+|...=|-| ++.
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 405 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQ-----DTLYAH-SHRQFYRDCTISGTIDFL-FGD- 405 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeecc-----chhccC-CCcEEEEeCEEEEeccEE-ecC-
Confidence 457899999999998753 23333 45788999999999754 334333 345689999998754533 332
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEE----EEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVR----IKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~----Ik~~~g~~-g~i 215 (331)
-...|+||.+.... ...|.-.+. ....-.-+.|.||++......+. .+++=|+. ..-
T Consensus 406 ------------a~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~y 473 (670)
T PLN02217 406 ------------AAAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEY 473 (670)
T ss_pred ------------ceEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecCccccccccccceeeccCCCCC
Confidence 34889999886531 111222221 11234568999999987642111 12221222 345
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|.+..|.+.-.|
T Consensus 474 srvVf~~t~l~~~I~P 489 (670)
T PLN02217 474 SRTIIMNTFIPDFVPP 489 (670)
T ss_pred ceEEEEecccCCeEcC
Confidence 7788888887775443
No 55
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=88.71 E-value=26 Score=35.65 Aligned_cols=141 Identities=11% Similarity=0.071 Sum_probs=76.2
Q ss_pred EEeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 71 LMNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
....+++..++|+|.|... ..+-+ ...+.+.+.+|.|.... |-+-.. +..-..++|+|...=|-| ++.
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~Q-----DTLy~~-~~Rqyy~~C~IeGtVDFI-FG~ 373 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQ-----DTLYVH-SAKQFYRECDIYGTIDFI-FGN 373 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecc-----cccccC-CCceEEEeeEEeccccee-ccC
Confidence 3446788888888887643 22332 34677888888888753 333332 234578888887654432 322
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEE----EEEecCCC-ce
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVR----IKTDKGRG-GY 214 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~----Ik~~~g~~-g~ 214 (331)
-...++||.+.... ...|.-.+. ....-.-+.|.||++........ .+++=|+. ..
T Consensus 374 -------------a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~ 440 (530)
T PLN02933 374 -------------AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAAPDLIPVKENFKAYLGRPWRK 440 (530)
T ss_pred -------------ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceEeccCCCC
Confidence 33777888775421 112222221 11223467888888876422111 11111221 33
Q ss_pred EEeEEEEEEEEcccccc
Q 020062 215 IENITIRNIKMERVKIP 231 (331)
Q Consensus 215 i~nV~f~nI~~~~~~~~ 231 (331)
-..+.|.+..|.+.-.|
T Consensus 441 ysrvVf~~s~l~~~I~p 457 (530)
T PLN02933 441 YSRTVIIKSFIDDLIHP 457 (530)
T ss_pred CceEEEEecccCCeecc
Confidence 46777777777765333
No 56
>PLN02665 pectinesterase family protein
Probab=88.61 E-value=24 Score=34.09 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=76.0
Q ss_pred EEEeeccEEEeceEEeCCCc---------eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCc
Q 020062 70 ELMNSNNILISNLTFRNSPF---------WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDD 139 (331)
Q Consensus 70 ~~~~~~nv~i~giti~n~~~---------~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 139 (331)
....++++..+||+|+|... ..+-+ ...+...+.||+|....| -+-.. ...-..+||+|...=|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QD-----TL~~~-~gr~yf~~CyIeG~VD 222 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQD-----TLCDD-KGRHFFKDCYIEGTVD 222 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccc-----eeEeC-CCCEEEEeeEEeeccc
Confidence 34557888888888888632 22221 345778888888886533 23222 2345778888876545
Q ss_pred eEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCE----EEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-EecCCCc
Q 020062 140 LVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSG----VGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGG 213 (331)
Q Consensus 140 ~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~g----i~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g 213 (331)
-| ++. -...+++|.+... ..+ |.--+. ....-.-..|.||++......+.++ .| +
T Consensus 223 FI-FG~-------------g~a~fe~C~i~s~-~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yLGRpW----~ 283 (366)
T PLN02665 223 FI-FGS-------------GKSLYLNTELHVV-GDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYLGRAW----M 283 (366)
T ss_pred ee-ccc-------------cceeeEccEEEEe-cCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceeecCCC----C
Confidence 33 232 3467888877653 221 222111 1112345678888887653223332 12 2
Q ss_pred eEEeEEEEEEEEcccccc
Q 020062 214 YIENITIRNIKMERVKIP 231 (331)
Q Consensus 214 ~i~nV~f~nI~~~~~~~~ 231 (331)
.-..|.|.+..|.+.-.|
T Consensus 284 ~ysrvVf~~t~m~~~I~p 301 (366)
T PLN02665 284 SRPRVVFAYTEMSSVVNP 301 (366)
T ss_pred CcceEEEEccccCCeEcc
Confidence 345677877777765333
No 57
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=88.51 E-value=26 Score=35.90 Aligned_cols=108 Identities=11% Similarity=0.104 Sum_probs=55.7
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..+||+|.|... ..+-+ ...+.+.+.||+|....| -+-.. +..-..++|+|...=|-| ++.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~-~~rq~y~~C~I~GtVDFI-FG~- 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAH-SLRQFYKSCRIQGNVDFI-FGN- 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeC-CCceEEEeeEEeecCCEE-ecC-
Confidence 346788888888877642 12222 345667777777776432 23222 233456777776644432 222
Q ss_pred CCccCcccCCCcccEEEEEEEEeCC---------CCCEEEEecc-ccCCEEEEEEEeeEEeCC
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTP---------TCSGVGIGSE-MSGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~---------~~~gi~iGs~-~~g~i~nI~~~n~~i~~~ 199 (331)
-...|+||.+... ....|..-+. ....-.-+.|.||++...
T Consensus 399 ------------a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 ------------SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred ------------ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 3467777766521 0122332211 112234567777777554
No 58
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=88.30 E-value=15 Score=37.44 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=55.0
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..+||+|+|... ..+-+ ..++...+.+|+|....| -+-.. +..-..+||+|...=|-| ++
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG-- 390 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD-----TLYAH-SLRQFYRDSYITGTVDFI-FG-- 390 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceec-CCcEEEEeeEEEecccee-cc--
Confidence 345777777777777643 12222 345667777777776432 23222 233467777776644432 22
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCC-----CEEEEecc-ccCCEEEEEEEeeEEeCC
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGIGSE-MSGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~iGs~-~~g~i~nI~~~n~~i~~~ 199 (331)
.-...++||.+..... ..|..-+. ....-.-+.|.||++...
T Consensus 391 -----------~a~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 391 -----------NAAVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -----------cceeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 2346677776644211 12222111 112234567777777654
No 59
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=88.16 E-value=20 Score=36.83 Aligned_cols=140 Identities=13% Similarity=0.105 Sum_probs=78.2
Q ss_pred EeeccEEEeceEEeCCCc----eEEe-EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIH-PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~-~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|.|... ..+- ....+...+.+|+|.... |-+-.. +..-..+||+|...=|-| ++
T Consensus 337 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG-- 407 (566)
T PLN02713 337 VVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQ-----DTLYTH-SLRQFYRECDIYGTVDFI-FG-- 407 (566)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCC-----cceEEC-CCCEEEEeeEEeccccee-cc--
Confidence 346889999999988643 2232 245677888888888753 333333 234588888887654533 32
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEec-cccCCEEEEEEEeeEEeCCCceE----EEEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGS-EMSGGIFNVTVDQLHVWDAAAGV----RIKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs-~~~g~i~nI~~~n~~i~~~~~gi----~Ik~~~g~~-g~i 215 (331)
.-.+.++||.+.... ...|..-+ .....-.-+.|.||++....... ..+++=|+. ..-
T Consensus 408 -----------~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 476 (566)
T PLN02713 408 -----------NAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEY 476 (566)
T ss_pred -----------cceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCCc
Confidence 244788888875421 11233222 11223356888888887653210 111221221 234
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|.+..|.+.-.|
T Consensus 477 sr~V~~~s~~~~~I~p 492 (566)
T PLN02713 477 SRTVVMQSYIDGLIDP 492 (566)
T ss_pred ceEEEEecccCCeecc
Confidence 6677777777765333
No 60
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=88.09 E-value=11 Score=38.53 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=74.0
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|..+......+.+. .++.+.+.||.|...-|-+-..++ .-.+++|++.+..
T Consensus 326 ~v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~~-------------rq~y~~C~I~GtV 392 (553)
T PLN02708 326 GVLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHSL-------------RQFYKSCRIQGNV 392 (553)
T ss_pred EEEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCCC-------------ceEEEeeEEeecC
Confidence 45667999999999997643223344443 589999999999998786655542 3578999998762
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC------ce--EEEEEec-CCCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA------AG--VRIKTDK-GRGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~------~g--i~Ik~~~-g~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. .| -.|.... .....-..+.|.|.+++..
T Consensus 393 D--FIFG~------a~avfq~c~i~~~~~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 393 D--FIFGN------SAAVFQDCAILIAPRQLKPEKGENNAVTAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred C--EEecC------ceEEEEccEEEEeccccCCCCCCceEEEeCCCCCCCCCceEEEEccEEecC
Confidence 2 33342 57889999987321 11 2333221 1123345788999999764
No 61
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=87.76 E-value=34 Score=34.74 Aligned_cols=140 Identities=9% Similarity=0.074 Sum_probs=74.3
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|.|... ..+.+ ...+...+.+|.|.... |-+-... ..-..++|+|...=|-| ++.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG~- 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQ-----DTLYTHT-MRQFYRECRITGTVDFI-FGD- 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccC-----CeeEeCC-CCEEEEeeEEeecccEE-ecC-
Confidence 446788888888887642 22322 34567778888887643 3333322 33467778887654433 322
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEE----EEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVR----IKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~----Ik~~~g~~-g~i 215 (331)
-...++||.+.... ...|...+. ....-.-+.|.||++........ .+++=|+. +.-
T Consensus 362 ------------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~~~~~~~~~~~~~yLGRPW~~y 429 (520)
T PLN02201 362 ------------ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISADTDLLPYLNTTATYLGRPWKLY 429 (520)
T ss_pred ------------ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecCccccccccccceEeecCCCCC
Confidence 34777888776421 122333221 11233457788888765432110 11111221 335
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|.+..|.+.-.|
T Consensus 430 srvv~~~t~l~~~I~p 445 (520)
T PLN02201 430 SRTVFMQNYMSDAIRP 445 (520)
T ss_pred ceEEEEecCcCCeEcc
Confidence 6777777777765333
No 62
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=87.76 E-value=24 Score=35.98 Aligned_cols=137 Identities=11% Similarity=0.100 Sum_probs=72.2
Q ss_pred EeeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..+||+|+|.... .+-+ ...+.+.+.+|+|....| -+-.. +..-..+||+|...=|-| ++.
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD-----TLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 385 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQD-----TLYVH-SFRQFYRECDIYGTIDYI-FGN- 385 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccc-----hhccC-CCceEEEeeEEeecccee-ecc-
Confidence 3468888888888876432 1222 346778888888886533 23322 344577888887654433 322
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCC-----CEEEEecc-ccCCEEEEEEEeeEEeCCCceE----EEEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGV----RIKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi----~Ik~~~g~~-g~i 215 (331)
-...++||.+..... .-|.-.+. ....-.-+.|.||++....... ..+++=|+. ..-
T Consensus 386 ------------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~~ 453 (541)
T PLN02416 386 ------------AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILATEDLYSNSNSVKSYLGRPWRVY 453 (541)
T ss_pred ------------ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecCCccccccccccccccCCCCCC
Confidence 347777777754211 11111111 1122346778888876543110 112221222 234
Q ss_pred EeEEEEEEEEccc
Q 020062 216 ENITIRNIKMERV 228 (331)
Q Consensus 216 ~nV~f~nI~~~~~ 228 (331)
..+.|.+-.|.+.
T Consensus 454 sr~v~~~s~i~~~ 466 (541)
T PLN02416 454 SRTVVLESYIDDF 466 (541)
T ss_pred ccEEEEecccCCe
Confidence 5666777666664
No 63
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=87.48 E-value=31 Score=35.58 Aligned_cols=141 Identities=13% Similarity=0.104 Sum_probs=76.2
Q ss_pred EEeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 71 LMNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
....+++..++|+|.|... ..+-+ ...+...+.+|+|.... |-+-.. +..-..+||+|...=|-| ++
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG- 427 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQ-----DTLYVH-SNRQFFRECDIYGTVDFI-FG- 427 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccC-----cccccC-CCcEEEEecEEEecccee-cc-
Confidence 3456788888888887643 22322 34677888888888753 333332 334577888887654432 22
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCce----EEEEEecCCC-ce
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAG----VRIKTDKGRG-GY 214 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~g----i~Ik~~~g~~-g~ 214 (331)
.-...++||.+.... ..-|.-.+. ....-.-+.|.||++.....- -..+++=|+. ..
T Consensus 428 ------------~a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ 495 (587)
T PLN02484 428 ------------NAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFPTYLGRPWKL 495 (587)
T ss_pred ------------cceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecCCccccccCccceeccCCCCC
Confidence 234778888775421 122222221 112335678888888764311 0112222222 33
Q ss_pred EEeEEEEEEEEcccccc
Q 020062 215 IENITIRNIKMERVKIP 231 (331)
Q Consensus 215 i~nV~f~nI~~~~~~~~ 231 (331)
-..+.|.+..|.+.-.|
T Consensus 496 ysrvV~~~s~i~~~I~p 512 (587)
T PLN02484 496 YSRTVYMMSYMGDHIHP 512 (587)
T ss_pred CceEEEEecccCCeEcc
Confidence 56677777777765443
No 64
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=87.17 E-value=19 Score=37.15 Aligned_cols=61 Identities=18% Similarity=0.147 Sum_probs=29.3
Q ss_pred eeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCc
Q 020062 73 NSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDD 139 (331)
Q Consensus 73 ~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 139 (331)
..+++..+||+|+|.... .+-+ ...+...+.+|.|.... |-+-.. +..-..++|+|...=|
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~Q-----DTLy~~-~~rq~y~~c~I~GtvD 425 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQ-----DTLYVH-SNRQFFVKCHITGTVD 425 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEeeccc
Confidence 356666666666665321 2221 23455566666666532 222222 2233556666655433
No 65
>PLN02682 pectinesterase family protein
Probab=86.99 E-value=14 Score=35.74 Aligned_cols=114 Identities=11% Similarity=0.010 Sum_probs=70.9
Q ss_pred EEeeEcEEEEeEEEECCCCC-----CCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEE
Q 020062 94 PVYCRNVVIKGMTILAPLNA-----PNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVS 167 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~ 167 (331)
....+++..+|++|.|.... ....++.+. .++.+.+.||.|...-|-+-... ..-.++||+
T Consensus 159 ~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~C~ 225 (369)
T PLN02682 159 AVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL-------------GRHYFKDCY 225 (369)
T ss_pred EEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC-------------CCEEEEeeE
Confidence 44567899999999996421 111223332 57999999999999877665443 347899999
Q ss_pred EeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCc-eEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 168 GTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAA-GVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 168 ~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~-gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
+.+.. + +=+|. -...|++|++..... .-.|..... ....-....|.|.+++..
T Consensus 226 IeG~V-D-FIFG~------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 226 IEGSV-D-FIFGN------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred Ecccc-c-EEecC------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 98752 2 22332 467889998875322 123332211 112234677899998864
No 66
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=86.70 E-value=4.7 Score=37.41 Aligned_cols=102 Identities=20% Similarity=0.353 Sum_probs=54.4
Q ss_pred cccCCCccEEEEeeEEeeC-CceEEEccCCCccCcccCCCcccEEEEEEEEeCCCCCEEEEeccc-cC----CEEEEEEE
Q 020062 119 IDPDSSTNVCIEDCYIESG-DDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSEM-SG----GIFNVTVD 192 (331)
Q Consensus 119 i~~~~s~nV~I~n~~i~~g-DD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~~-~g----~i~nI~~~ 192 (331)
+|+...++..|+|....+= -| ++-|++-+..-.++. +|.|..|.|..+.+ ..|+-||... .| -=.|....
T Consensus 262 vhvengkhfvirnvkaknitpd-fskkagidnatvaiy-gcdnfvidni~mvn--sagmligygvikg~ylsipqnfkln 337 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPD-FSKKAGIDNATVAIY-GCDNFVIDNIEMIN--SAGMLIGYGVIKGKYLSIPQNFKLN 337 (464)
T ss_pred EEecCCcEEEEEeeeccccCCC-chhhcCCCcceEEEE-cccceEEecccccc--ccccEEEeeeeeccEecccccceec
Confidence 5666667777777666541 11 122222111001111 38899999988866 4777777541 22 12566677
Q ss_pred eeEEeCCC-----ceEEEEEecCCCceEEeEEEEEEEEccc
Q 020062 193 QLHVWDAA-----AGVRIKTDKGRGGYIENITIRNIKMERV 228 (331)
Q Consensus 193 n~~i~~~~-----~gi~Ik~~~g~~g~i~nV~f~nI~~~~~ 228 (331)
|+.+.++. +|+.|.+ +...+=|-+.|+.|+.+
T Consensus 338 ~i~ldn~~l~yklrgiqiss----gnatsfvaitn~~mkra 374 (464)
T PRK10123 338 NIQLDNTHLAYKLRGIQISA----GNAVSFVALTNIEMKRA 374 (464)
T ss_pred eEeecccccceeeeeeEecc----CCcceEEEEeeeehhhh
Confidence 77766653 4555543 22334455666666554
No 67
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=86.44 E-value=41 Score=34.34 Aligned_cols=141 Identities=9% Similarity=0.018 Sum_probs=79.4
Q ss_pred EEeeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 71 LMNSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
....+++..++|+|+|.... .+-+ ...+...+.+|+|....| -+-.. +..-..+||+|...=|-| ++.
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQD-----TLy~~-~~rq~y~~c~I~GtVDFI-FG~ 381 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQD-----TLYVH-SLRQFYRECDIYGTVDFI-FGN 381 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCc-----ccccC-CCcEEEEeeEEeeccceE-eec
Confidence 34568889999999886432 2322 446678888888887543 33332 334678888887754533 332
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCC-----CCEEEEecc-ccCCEEEEEEEeeEEeCCCceE----EEEEecCCC-ce
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPT-----CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGV----RIKTDKGRG-GY 214 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~-----~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi----~Ik~~~g~~-g~ 214 (331)
-...|+||.+.... ...|...+. ....-.-+.|.||++.....-. ..+++=|+. ..
T Consensus 382 -------------a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ 448 (538)
T PLN03043 382 -------------AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKP 448 (538)
T ss_pred -------------ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecCCcccccccccceeccCCCCC
Confidence 34788888875421 123333221 1123356888888887653210 112222222 23
Q ss_pred EEeEEEEEEEEcccccc
Q 020062 215 IENITIRNIKMERVKIP 231 (331)
Q Consensus 215 i~nV~f~nI~~~~~~~~ 231 (331)
-..+.|.+..|.+.-.|
T Consensus 449 ysr~v~~~s~i~~~I~p 465 (538)
T PLN03043 449 YSRTVYMQSYIGDLIQP 465 (538)
T ss_pred CceEEEEecccCCeecc
Confidence 46777777777765444
No 68
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=86.42 E-value=38 Score=34.88 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=75.9
Q ss_pred EeeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|.|.... .+-+ ...+...+.+|+|.... |-+-.. +..-..++|+|...=|-| ++.
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~Q-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 415 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQ-----DTLYVH-SHRQFFRDCTVSGTVDFI-FGD- 415 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccc-----chhccC-CCcEEEEeeEEecccceE-ccC-
Confidence 3467888888888877532 2322 34677888888888753 333332 334577888887654533 222
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCC-----CEEEEecc-ccCCEEEEEEEeeEEeCCCceEE----EEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVR----IKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~----Ik~~~g~~-g~i 215 (331)
-...++||.+..... .-|.--+. ....-.-+.|.||++........ .+++=|+. ..-
T Consensus 416 ------------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~~~~~~~~~~~~yLGRpW~~y 483 (572)
T PLN02990 416 ------------AKVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEPAYIPVKSINKAYLGRPWKEF 483 (572)
T ss_pred ------------ceEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCccccccccccceEeecCCCCC
Confidence 337788887754211 11222111 11223467888888876532111 11221221 234
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|.+..|.+.-.|
T Consensus 484 srvV~~~s~i~~~I~p 499 (572)
T PLN02990 484 SRTIIMGTTIDDVIDP 499 (572)
T ss_pred ceEEEEecccCCeecc
Confidence 6777777777765333
No 69
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=85.79 E-value=22 Score=35.04 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=22.2
Q ss_pred eeEcEEEEeEEEECCCC----CCCCCccccC-CCccEEEEeeEEeeCCceEEE
Q 020062 96 YCRNVVIKGMTILAPLN----APNTDGIDPD-SSTNVCIEDCYIESGDDLVAV 143 (331)
Q Consensus 96 ~s~nV~i~n~~i~~~~~----~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai 143 (331)
..++++.+|++|.|... ..+...+.+. ..+.+.+.+|.|...-|-+-.
T Consensus 204 ~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~ 256 (422)
T PRK10531 204 QNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFV 256 (422)
T ss_pred ECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeee
Confidence 44555555665555431 0011112221 355666666666665554443
No 70
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=85.58 E-value=4.9 Score=37.29 Aligned_cols=15 Identities=7% Similarity=0.375 Sum_probs=9.3
Q ss_pred CeeeEEEEeEEEEec
Q 020062 280 QFEEICMKNVSLLGL 294 (331)
Q Consensus 280 ~i~~I~~~NV~i~~~ 294 (331)
.|.++.++||.+...
T Consensus 299 gcdnfvidni~mvns 313 (464)
T PRK10123 299 GCDNFVIDNIEMINS 313 (464)
T ss_pred cccceEEeccccccc
Confidence 356666777766554
No 71
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=85.50 E-value=21 Score=31.78 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=26.1
Q ss_pred cEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEee-CCceEEEccC
Q 020062 99 NVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIES-GDDLVAVKSG 146 (331)
Q Consensus 99 nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~-gDD~iai~s~ 146 (331)
..+++|+.|-.+ ..||||... +-+|+|.+... +.|++.+|..
T Consensus 62 GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~ 104 (215)
T PF03211_consen 62 GATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGD 104 (215)
T ss_dssp TEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESS
T ss_pred CCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCC
Confidence 455666655332 357777764 66777777765 7788888864
No 72
>PLN02197 pectinesterase
Probab=85.12 E-value=36 Score=35.11 Aligned_cols=137 Identities=9% Similarity=0.073 Sum_probs=65.7
Q ss_pred EeeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|+|... ..+-+ ...+...+.+|+|.... |-+-.. +..-..+||+|...=|-| ++.
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQ-----DTLy~~-~~Rqyy~~C~I~GtVDFI-FG~- 432 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQ-----DTLYVN-NGRQFYRNIVVSGTVDFI-FGK- 432 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecC-----cceEec-CCCEEEEeeEEEeccccc-ccc-
Confidence 346777778888877542 12222 34566777777777643 223222 233467777776543422 221
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCC-C----EEEEeccc--cCCEEEEEEEeeEEeCCCce----EEEEEecCCC-ce
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTC-S----GVGIGSEM--SGGIFNVTVDQLHVWDAAAG----VRIKTDKGRG-GY 214 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~-~----gi~iGs~~--~g~i~nI~~~n~~i~~~~~g----i~Ik~~~g~~-g~ 214 (331)
.-..|+||.+..... . -|.-.+.. ...-.-+.|.||++.....- ...+++=|+. ..
T Consensus 433 ------------a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ 500 (588)
T PLN02197 433 ------------SATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWKK 500 (588)
T ss_pred ------------eeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEEecCCcccccccccccccCCCCCC
Confidence 226677776653211 0 11111110 11223467777777654310 1112222222 23
Q ss_pred EEeEEEEEEEEccc
Q 020062 215 IENITIRNIKMERV 228 (331)
Q Consensus 215 i~nV~f~nI~~~~~ 228 (331)
-..+.|.+..|.+.
T Consensus 501 ysrvV~~~s~~~~~ 514 (588)
T PLN02197 501 FSTTVIISTEIGDL 514 (588)
T ss_pred CceEEEEecccCCe
Confidence 45666666666554
No 73
>PLN02432 putative pectinesterase
Probab=84.95 E-value=34 Score=32.06 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=30.3
Q ss_pred eeccEEEeceEEeCCCc---eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCc
Q 020062 73 NSNNILISNLTFRNSPF---WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDD 139 (331)
Q Consensus 73 ~~~nv~i~giti~n~~~---~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 139 (331)
..+++.++||+|+|... -.+-+ ...+...+.+|+|.... |-+-.. ...-..+||+|...=|
T Consensus 92 ~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G~Q-----DTLy~~-~gr~yf~~c~I~G~VD 156 (293)
T PLN02432 92 LASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILSYQ-----DTLLDD-TGRHYYRNCYIEGATD 156 (293)
T ss_pred ECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEeccc-----ceeEEC-CCCEEEEeCEEEeccc
Confidence 45677777777776532 11111 23455666666666532 222221 2234566666655434
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=84.58 E-value=4 Score=39.52 Aligned_cols=84 Identities=14% Similarity=0.025 Sum_probs=57.7
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
+.+=.+|++.|+.+...+ ...|+-+.+.+++++.+|.|..-. +.++.+. ....|+.|+|.+- +
T Consensus 117 V~gM~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~~------------~~~~VrGC~F~~C-~ 179 (386)
T PF01696_consen 117 VVGMEGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFH-GTCLESW------------AGGEVRGCTFYGC-W 179 (386)
T ss_pred EeeeeeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCc-ceeEEEc------------CCcEEeeeEEEEE-E
Confidence 344568999999999764 234677778999999999998742 3445542 4488999999764 6
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCC
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~ 199 (331)
.||.-. ....+.|+.|+|...
T Consensus 180 ~gi~~~-----~~~~lsVk~C~FekC 200 (386)
T PF01696_consen 180 KGIVSR-----GKSKLSVKKCVFEKC 200 (386)
T ss_pred EEeecC-----CcceEEeeheeeehe
Confidence 666433 345555666666554
No 75
>PLN02916 pectinesterase family protein
Probab=84.48 E-value=21 Score=35.96 Aligned_cols=114 Identities=13% Similarity=0.070 Sum_probs=71.4
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .++...+.+|.|...-|-+-..++ .-.+++|++.+..
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 339 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL-------------RQFYRDCHIYGTI 339 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC-------------CEEEEecEEeccc
Confidence 34567888999999987543333344443 578889999999987776655542 3688999987752
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. ..-.|..... ....-..+.|.|.+++..
T Consensus 340 D--FIFG~------a~avFq~C~I~~~~~~~~~~g~ITAq~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 340 D--FIFGD------AAVVFQNCDIFVRRPMDHQGNMITAQGRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred c--eeccC------ceEEEecCEEEEecCCCCCcceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 2 22332 56788888876432 1223433211 123335788999998864
No 76
>PLN02634 probable pectinesterase
Probab=84.27 E-value=18 Score=34.83 Aligned_cols=112 Identities=10% Similarity=0.081 Sum_probs=69.2
Q ss_pred EeeEcEEEEeEEEECCCCC-----CCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEE
Q 020062 95 VYCRNVVIKGMTILAPLNA-----PNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSG 168 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~ 168 (331)
...+++..+|++|.|.... .+...+.+. .++.+.+.+|.|...-|-+.... ..-.++||++
T Consensus 146 V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~-------------gR~yf~~CyI 212 (359)
T PLN02634 146 VYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA-------------GRHYFKECYI 212 (359)
T ss_pred EECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC-------------CCEEEEeeEE
Confidence 3457889999999986421 112223332 57889999999999777665443 3478999999
Q ss_pred eCCCCCEEEEeccccCCEEEEEEEeeEEeCCCce-EEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 169 TTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAG-VRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 169 ~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~g-i~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
.+. -+ +=+|. -...|+||++...... -.|... ++ ...-....|.|.+++..
T Consensus 213 eG~-VD-FIFG~------g~a~Fe~C~I~s~~~~~g~ITA~-~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 213 EGS-ID-FIFGN------GRSMYKDCELHSIASRFGSIAAH-GRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred ccc-cc-EEcCC------ceEEEeccEEEEecCCCcEEEeC-CCCCCCCCcEEEEEcCEEcCC
Confidence 765 22 22332 3557899988754322 233322 21 12235678999998764
No 77
>PLN02432 putative pectinesterase
Probab=84.12 E-value=23 Score=33.18 Aligned_cols=111 Identities=13% Similarity=0.103 Sum_probs=69.3
Q ss_pred EeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 95 VYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
...+++.++|++|.|... .....+.+. ..+.+.+.+|.|...-|.+-... ..-.++||++.+. -
T Consensus 91 v~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~-------------gr~yf~~c~I~G~-V 155 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT-------------GRHYYRNCYIEGA-T 155 (293)
T ss_pred EECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC-------------CCEEEEeCEEEec-c
Confidence 455789999999999643 222334333 57999999999999778665443 2368899998765 2
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCCC-ceEEEEEecC-CCceEEeEEEEEEEEcc
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDAA-AGVRIKTDKG-RGGYIENITIRNIKMER 227 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~~-~gi~Ik~~~g-~~g~i~nV~f~nI~~~~ 227 (331)
+ +-+|. -...|++|++.-.. ..-.|..... ....-....|.|.++..
T Consensus 156 D-FIFG~------g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 156 D-FICGN------AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred c-EEecC------ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcc
Confidence 2 22342 34778888876432 1124433211 11222457888888885
No 78
>PLN02497 probable pectinesterase
Probab=84.03 E-value=40 Score=32.15 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=64.1
Q ss_pred EeeccEEEeceEEeCCCce-----------EEe-EEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCc
Q 020062 72 MNSNNILISNLTFRNSPFW-----------TIH-PVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDD 139 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~~-----------~i~-~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 139 (331)
...+++.++||++.|...+ .+- ....+...+.||+|....| -+-. ....-..+||+|...=|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QD-----TLy~-~~gRqyf~~C~IeG~VD 185 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQD-----TLWD-SDGRHYFKRCTIQGAVD 185 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEecccc-----ceee-CCCcEEEEeCEEEeccc
Confidence 3467777777777776431 121 1335666677777776432 2221 12345667777765444
Q ss_pred eEEEccCCCccCcccCCCcccEEEEEEEEeCCCC-------CEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-EecC
Q 020062 140 LVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC-------SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDKG 210 (331)
Q Consensus 140 ~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~-------~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g 210 (331)
-| ++. -...++||.+..... ..|.--+. ....-.-..|.||++.... -..++ .|
T Consensus 186 FI-FG~-------------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW-- 248 (331)
T PLN02497 186 FI-FGS-------------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTG-SAYLGRPW-- 248 (331)
T ss_pred EE-ccC-------------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCC-CEEEeCCC--
Confidence 22 221 236677776653200 11222111 1122334567777766532 22222 11
Q ss_pred CCceEEeEEEEEEEEccc
Q 020062 211 RGGYIENITIRNIKMERV 228 (331)
Q Consensus 211 ~~g~i~nV~f~nI~~~~~ 228 (331)
..-..|.|.+..|.+.
T Consensus 249 --~~ysrvvf~~t~m~~~ 264 (331)
T PLN02497 249 --RGYSRVLFYNSNLTDV 264 (331)
T ss_pred --CCCceEEEEecccCCe
Confidence 2235666666666654
No 79
>PLN02665 pectinesterase family protein
Probab=83.98 E-value=31 Score=33.42 Aligned_cols=117 Identities=9% Similarity=-0.004 Sum_probs=72.8
Q ss_pred EeEEeeEcEEEEeEEEECCCCC-----CCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEE
Q 020062 92 IHPVYCRNVVIKGMTILAPLNA-----PNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRR 165 (331)
Q Consensus 92 i~~~~s~nV~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~n 165 (331)
.....++++..+|++|.|.... .....+.+. ..+.+.+.||.|...-|-+.... ..-.++|
T Consensus 148 Tv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~-------------gr~yf~~ 214 (366)
T PLN02665 148 TLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK-------------GRHFFKD 214 (366)
T ss_pred EEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC-------------CCEEEEe
Confidence 3355678999999999996421 111222222 57889999999999878665443 2478999
Q ss_pred EEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCce--EEEEEecC-CCceEEeEEEEEEEEcccc
Q 020062 166 VSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAG--VRIKTDKG-RGGYIENITIRNIKMERVK 229 (331)
Q Consensus 166 c~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~g--i~Ik~~~g-~~g~i~nV~f~nI~~~~~~ 229 (331)
|++.+..+ +=+|. -...|++|++.-...+ -.|..... ....-....|.|.+++...
T Consensus 215 CyIeG~VD--FIFG~------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 215 CYIEGTVD--FIFGS------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred eEEeeccc--eeccc------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 99987622 22342 3557888888765443 23332211 1112345679999998753
No 80
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=83.36 E-value=25 Score=35.75 Aligned_cols=115 Identities=11% Similarity=0.123 Sum_probs=72.1
Q ss_pred eEEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCC
Q 020062 93 HPVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTP 171 (331)
Q Consensus 93 ~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~ 171 (331)
.....+++..+|++|.|.........+.+. .++.+.+.+|.|...-|-+-..+ ..-.+++|++.+.
T Consensus 308 v~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~-------------~Rqyy~~C~I~Gt 374 (529)
T PLN02170 308 VAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS-------------KRQFYRETDITGT 374 (529)
T ss_pred EEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC-------------CCEEEEeeEEccc
Confidence 345667899999999987532222333333 57889999999999777665543 2367899999775
Q ss_pred CCCEEEEeccccCCEEEEEEEeeEEeCCCc---eEEEEEec-CCCceEEeEEEEEEEEccc
Q 020062 172 TCSGVGIGSEMSGGIFNVTVDQLHVWDAAA---GVRIKTDK-GRGGYIENITIRNIKMERV 228 (331)
Q Consensus 172 ~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~---gi~Ik~~~-g~~g~i~nV~f~nI~~~~~ 228 (331)
.+ +=+|. -...|+||++.-... .-.|.... .....-....|.|.+++..
T Consensus 375 VD--FIFG~------a~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 375 VD--FIFGN------SAVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred cc--eeccc------ceEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 22 22332 557888888865321 12343321 1113335678999999874
No 81
>PLN02671 pectinesterase
Probab=82.78 E-value=47 Score=32.04 Aligned_cols=135 Identities=8% Similarity=0.128 Sum_probs=70.9
Q ss_pred EEeeccEEEeceEEeCCCc--------eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceE
Q 020062 71 LMNSNNILISNLTFRNSPF--------WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLV 141 (331)
Q Consensus 71 ~~~~~nv~i~giti~n~~~--------~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 141 (331)
....+++..+||+|.|... ..+-+ ...+.+.+.||+|....| -+-.. ...-..+||+|...=|-|
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~CyIeG~VDFI 223 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQD-----TLLDE-TGSHYFYQCYIQGSVDFI 223 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEecccc-----ccEeC-CCcEEEEecEEEEeccEE
Confidence 3456788888888887621 12221 245777788888876432 22221 234577777777654433
Q ss_pred EEccCCCccCcccCCCcccEEEEEEEEeCCC--CCEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-EecCCCceEEe
Q 020062 142 AVKSGWDHYGIAMARPSSNIIVRRVSGTTPT--CSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDKGRGGYIEN 217 (331)
Q Consensus 142 ai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~--~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~g~~g~i~n 217 (331)
++. -...+++|.+.... ...|.--+. ....-.-..|.||++.... ..+++ .| +.-..
T Consensus 224 -FG~-------------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~g-~vyLGRPW----~~yar 284 (359)
T PLN02671 224 -FGN-------------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGTG-KIYLGRAW----GNYSR 284 (359)
T ss_pred -ecc-------------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccCc-cEEEeCCC----CCCce
Confidence 222 23677777775421 122222221 1122345677777776532 22332 12 22356
Q ss_pred EEEEEEEEccccc
Q 020062 218 ITIRNIKMERVKI 230 (331)
Q Consensus 218 V~f~nI~~~~~~~ 230 (331)
|.|.|..|.+.-.
T Consensus 285 vVf~~t~m~~~I~ 297 (359)
T PLN02671 285 TVYSNCFIADIIT 297 (359)
T ss_pred EEEEecccCCeEc
Confidence 7777777766433
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=82.68 E-value=1.5 Score=28.35 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=18.9
Q ss_pred EeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEe
Q 020062 92 IHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIE 135 (331)
Q Consensus 92 i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~ 135 (331)
|.+..|.+.+|++-++.. +.|||.+..+.+-+|++..+.
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~ 40 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTAS 40 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEE
Confidence 344445555555555553 234555554444455444443
No 83
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=82.57 E-value=26 Score=34.49 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=86.3
Q ss_pred EEEEeeccEEEeceEEeCCCc--------eEEe-EEeeEcEEEEeEEEECCCCCCCC------CccccCCCccEEEEeeE
Q 020062 69 VELMNSNNILISNLTFRNSPF--------WTIH-PVYCRNVVIKGMTILAPLNAPNT------DGIDPDSSTNVCIEDCY 133 (331)
Q Consensus 69 i~~~~~~nv~i~giti~n~~~--------~~i~-~~~s~nV~i~n~~i~~~~~~~n~------DGi~~~~s~nV~I~n~~ 133 (331)
-.....+++.+++|+|+|+.. ..+- ....+.+.+.+|+|....|-.-. .+..........++||+
T Consensus 200 Tv~v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~Cy 279 (422)
T PRK10531 200 VFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSY 279 (422)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCE
Confidence 334568999999999998853 2222 24578899999999986542111 11111223357899999
Q ss_pred EeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC----CE-EEEeccccCCEEEEEEEeeEEeCCCce-EEEE-
Q 020062 134 IESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC----SG-VGIGSEMSGGIFNVTVDQLHVWDAAAG-VRIK- 206 (331)
Q Consensus 134 i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~----~g-i~iGs~~~g~i~nI~~~n~~i~~~~~g-i~Ik- 206 (331)
|...=|-| ++. -...++||.+..... .| |.-.+.....-.-.+|.||+|.....+ ..++
T Consensus 280 IeG~VDFI-FG~-------------g~AvFenC~I~s~~~~~~~~g~ITA~~t~~~~~~GfvF~nCrit~~g~~~~yLGR 345 (422)
T PRK10531 280 IEGDVDFV-FGR-------------GAVVFDNTEFRVVNSRTQQEAYVFAPATLPNIYYGFLAINSRFNASGDGVAQLGR 345 (422)
T ss_pred EeecccEE-ccC-------------ceEEEEcCEEEEecCCCCCceEEEecCCCCCCCCEEEEECCEEecCCCCCeeccC
Confidence 98755533 332 347899998865311 11 111111122334588999998874322 2232
Q ss_pred EecCC---------CceEEeEEEEEEEEcccccc
Q 020062 207 TDKGR---------GGYIENITIRNIKMERVKIP 231 (331)
Q Consensus 207 ~~~g~---------~g~i~nV~f~nI~~~~~~~~ 231 (331)
.|... ......|.|.+..|...-.|
T Consensus 346 pW~~~s~~~~y~~~~~~~arvV~~~s~i~~~I~p 379 (422)
T PRK10531 346 AWDVDAGLSAYVNGANTNGQVVIRDSAINEGFNT 379 (422)
T ss_pred CCcccccccccccccCCcceEEEEeCcccceeCc
Confidence 12111 11345788888888876444
No 84
>PLN02304 probable pectinesterase
Probab=82.52 E-value=50 Score=32.11 Aligned_cols=133 Identities=10% Similarity=0.133 Sum_probs=68.2
Q ss_pred EeeccEEEeceEEeCCCc---------eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceE
Q 020062 72 MNSNNILISNLTFRNSPF---------WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLV 141 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~---------~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~i 141 (331)
...+++..++|+|+|... ..+-+ ...+...+.+|.|....| -+-.. ...-..+||+|...=|-|
T Consensus 159 v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QD-----TLy~~-~gR~Yf~~CyIeG~VDFI 232 (379)
T PLN02304 159 VFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQD-----TLHDD-RGRHYFKDCYIQGSIDFI 232 (379)
T ss_pred EECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccc-----eeEeC-CCCEEEEeeEEcccccEE
Confidence 346788888888887642 12222 346677777777776433 23222 234567777776644432
Q ss_pred EEccCCCccCcccCCCcccEEEEEEEEeCCCC----------CEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEE-Eec
Q 020062 142 AVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC----------SGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIK-TDK 209 (331)
Q Consensus 142 ai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~----------~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik-~~~ 209 (331)
++. -...+++|.+..... ..|.--+. ....-.-..|.||++.... .+.++ .|
T Consensus 233 -FG~-------------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~g-~vyLGRPW- 296 (379)
T PLN02304 233 -FGD-------------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGTG-RIWLGRAW- 296 (379)
T ss_pred -ecc-------------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccCc-ceeecCCC-
Confidence 332 236777777754200 11222111 1122345667777776532 22222 11
Q ss_pred CCCceEEeEEEEEEEEcccc
Q 020062 210 GRGGYIENITIRNIKMERVK 229 (331)
Q Consensus 210 g~~g~i~nV~f~nI~~~~~~ 229 (331)
..-..|.|.+..|.+.-
T Consensus 297 ---~pysrvVf~~t~m~~~I 313 (379)
T PLN02304 297 ---RPYSRVVFAYTSMTDII 313 (379)
T ss_pred ---CCcceEEEEecccCCEE
Confidence 23456777777666643
No 85
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=81.80 E-value=36 Score=34.35 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=21.3
Q ss_pred eeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEE
Q 020062 96 YCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVA 142 (331)
Q Consensus 96 ~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~ia 142 (331)
..+++..+|++|.|.........+.+. .+..+.+.+|.|...-|-+-
T Consensus 268 ~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy 315 (497)
T PLN02698 268 TGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLY 315 (497)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchhe
Confidence 334555555555554321111222222 34555556666655444433
No 86
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=81.52 E-value=10 Score=38.59 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=71.7
Q ss_pred eEEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCC
Q 020062 93 HPVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTP 171 (331)
Q Consensus 93 ~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~ 171 (331)
.....+++..+|++|.|.....+...+.+. .+..+.+.||.|...-|-+-..+ ..-.++||++.+.
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~-------------~rqyy~~C~I~Gt 380 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS-------------LRQFYRECEIYGT 380 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC-------------CceEEEeeEEecc
Confidence 345678899999999987543233334333 57899999999998777655443 2368999999875
Q ss_pred CCCEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 172 TCSGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 172 ~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
.+ +=+|. -...|+||++.-... .-.|... ++ ...-..+.|.|.++...
T Consensus 381 VD--FIFG~------a~avfq~C~i~~r~~~~~~~~~iTA~-~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 381 ID--FIFGN------GAAVLQNCKIYTRVPLPLQKVTITAQ-GRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred cc--eEccC------ceeEEeccEEEEccCCCCCCceEEcc-CCCCCCCCcEEEEEcCEEccC
Confidence 22 22332 457888998874321 1233332 21 12335677888888753
No 87
>PLN02671 pectinesterase
Probab=81.41 E-value=27 Score=33.69 Aligned_cols=114 Identities=7% Similarity=0.014 Sum_probs=69.0
Q ss_pred EEeeEcEEEEeEEEECCCC----CCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEE
Q 020062 94 PVYCRNVVIKGMTILAPLN----APNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSG 168 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~----~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~ 168 (331)
....+++..+|++|.|... .....++.+. ..+.+.+.||.|...-|-+-... ..-.++||++
T Consensus 150 ~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~-------------gR~yf~~CyI 216 (359)
T PLN02671 150 TIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDET-------------GSHYFYQCYI 216 (359)
T ss_pred EEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCC-------------CcEEEEecEE
Confidence 3456788889999998631 1112233332 57889999999998777664443 2368899999
Q ss_pred eCCCCCEEEEeccccCCEEEEEEEeeEEeCCCc-eEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 169 TTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAA-GVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 169 ~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~-gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
.+. -+ +=+|. -...|+||++..... .-.|..... ....-....|.|.++...
T Consensus 217 eG~-VD-FIFG~------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 217 QGS-VD-FIFGN------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred EEe-cc-EEecc------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccC
Confidence 765 22 22332 457889998875421 123433211 112224678999988763
No 88
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=81.32 E-value=29 Score=34.02 Aligned_cols=66 Identities=29% Similarity=0.531 Sum_probs=36.2
Q ss_pred CcccEEEEEEEEeCCCCCEEEEecccc--------CC-----------EEEEEEEeeEEeCCCceEEEEEecCCCceEEe
Q 020062 157 PSSNIIVRRVSGTTPTCSGVGIGSEMS--------GG-----------IFNVTVDQLHVWDAAAGVRIKTDKGRGGYIEN 217 (331)
Q Consensus 157 ~~~nI~i~nc~~~~~~~~gi~iGs~~~--------g~-----------i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~n 217 (331)
-+.|+.|+|+..-...++|+-+|+.+. +. =.|=.++|+.+.++ .|+.+. +.|.+++|+|
T Consensus 262 RnYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~-~DG~~~yvsn 339 (549)
T PF09251_consen 262 RNYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIG-MDGKGGYVSN 339 (549)
T ss_dssp -EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCE-EECCS-EEEE
T ss_pred ceeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeee-ecCCCceEee
Confidence 478899999987777799999987521 10 14455566655554 344443 2456788888
Q ss_pred EEEEEEE
Q 020062 218 ITIRNIK 224 (331)
Q Consensus 218 V~f~nI~ 224 (331)
|+.++..
T Consensus 340 i~~~d~~ 346 (549)
T PF09251_consen 340 ITVQDCA 346 (549)
T ss_dssp EEEES-S
T ss_pred EEeeccc
Confidence 8877644
No 89
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=80.48 E-value=13 Score=38.05 Aligned_cols=114 Identities=12% Similarity=0.084 Sum_probs=69.8
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|........++.+. .++...+.+|.|...-|-+-..++ .-.+++|++.+..
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 402 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSL-------------RQFYRECDIYGTV 402 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCC-------------CEEEEeeEEeccc
Confidence 34558899999999986533333334333 578888999999887776655442 3688999887652
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEec-CCCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDK-GRGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~-g~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -.+.|+||++.-... .-.|.... .....-..+.|.|.++...
T Consensus 403 D--FIFG~------a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 403 D--FIFGN------AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred c--eeccc------ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 2 22332 567888888864311 11333321 1112335678888888764
No 90
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=80.39 E-value=16 Score=34.31 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=71.6
Q ss_pred EeeccEEEeceEEeCCCce------EEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 72 MNSNNILISNLTFRNSPFW------TIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~~------~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
...+++.+++|+|.|.... .+. ...+.+.+.+|+|.... |-+-.. .....++||+|...-|-| .+.
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~-~~~d~~~f~~c~~~g~Q-----DTL~~~-~~r~y~~~c~IeG~vDFI-fG~ 155 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALR-VSGDRAAFYNCRFLGYQ-----DTLYAN-GGRQYFKNCYIEGNVDFI-FGN 155 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEE-ET-TSEEEEEEEEE-ST-----T-EEE--SSEEEEES-EEEESEEEE-EES
T ss_pred ccccceeeeeeEEecCCCCcccceeeee-ecCCcEEEEEeEEcccc-----ceeeec-cceeEEEeeEEEecCcEE-ECC
Confidence 3478999999999886422 133 34577888999988753 334333 345688889888766644 332
Q ss_pred CCCccCcccCCCcccEEEEEEEEeCCCC-----CEEEEecc-ccCCEEEEEEEeeEEeCCCc--------eEEEEEecCC
Q 020062 146 GWDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGIGSE-MSGGIFNVTVDQLHVWDAAA--------GVRIKTDKGR 211 (331)
Q Consensus 146 ~~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~iGs~-~~g~i~nI~~~n~~i~~~~~--------gi~Ik~~~g~ 211 (331)
-...|++|.+..... ..|.--+. ....-.-.+|.||++..... ...+.-.+
T Consensus 156 -------------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW-- 220 (298)
T PF01095_consen 156 -------------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW-- 220 (298)
T ss_dssp -------------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S--
T ss_pred -------------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecCccccccccceeEEecCcc--
Confidence 236788888764211 12322221 12345677889998886521 22332111
Q ss_pred CceEEeEEEEEEEEcccccc
Q 020062 212 GGYIENITIRNIKMERVKIP 231 (331)
Q Consensus 212 ~g~i~nV~f~nI~~~~~~~~ 231 (331)
+.-..|.|.|..|.+.-.|
T Consensus 221 -~~~s~vvf~~t~m~~~I~p 239 (298)
T PF01095_consen 221 -GPYSRVVFINTYMDDHINP 239 (298)
T ss_dssp -SEETEEEEES-EE-TTEET
T ss_pred -cceeeEEEEccccCCeeec
Confidence 2345788888888876444
No 91
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=79.26 E-value=44 Score=33.80 Aligned_cols=140 Identities=9% Similarity=0.082 Sum_probs=85.8
Q ss_pred EeeccEEEeceEEeCCCce----EEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCceEEEccC
Q 020062 72 MNSNNILISNLTFRNSPFW----TIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 72 ~~~~nv~i~giti~n~~~~----~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD~iai~s~ 146 (331)
...+++..++|+|+|.... .+-+ ...+...+.+|.|.... |-+-... ..-..++|+|...=|-| ++.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~Q-----DTLy~~~-~rqyy~~C~I~G~vDFI-FG~- 338 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQ-----DTLYAAA-LRQFYRECDIYGTIDFI-FGN- 338 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccc-----chheeCC-CcEEEEeeEEEeccceE-ecc-
Confidence 3578999999999988643 2332 45788999999999754 3343333 34589999998755533 332
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCC-----CEEEE-eccccCCEEEEEEEeeEEeCCCceEE----EEEecCCC-ceE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTC-----SGVGI-GSEMSGGIFNVTVDQLHVWDAAAGVR----IKTDKGRG-GYI 215 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~-----~gi~i-Gs~~~g~i~nI~~~n~~i~~~~~gi~----Ik~~~g~~-g~i 215 (331)
-...|+||.+..... ..|.- |......-.-+.|.||++........ .+++=|+. ..-
T Consensus 339 ------------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~y 406 (497)
T PLN02698 339 ------------AAAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKY 406 (497)
T ss_pred ------------cceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCC
Confidence 347899998864211 12332 21122334678999999987642111 12222222 345
Q ss_pred EeEEEEEEEEcccccc
Q 020062 216 ENITIRNIKMERVKIP 231 (331)
Q Consensus 216 ~nV~f~nI~~~~~~~~ 231 (331)
..+.|.+..|.+.-.|
T Consensus 407 sr~vf~~s~l~~~I~p 422 (497)
T PLN02698 407 SRAIVMESYIDDAIAE 422 (497)
T ss_pred ceEEEEecccCCcccC
Confidence 6778888777775444
No 92
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=79.09 E-value=14 Score=37.92 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=72.0
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+..+.+.||.|...-|-+-..+ ..-.++||++.+..
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~rq~y~~C~I~Gtv 407 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA-------------QRQFYRECNIYGTV 407 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC-------------CceEEEeeEEeccc
Confidence 34567899999999987543223344333 57889999999999777554443 23579999998762
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEec-CCCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDK-GRGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~-g~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -.+.|+||++.-... .-.|.... .....-..+.|.|.++...
T Consensus 408 D--FIFG~------a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 408 D--FIFGN------SAVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred c--eeecc------ceEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecC
Confidence 2 22332 567889998864311 12333321 1123345688999988864
No 93
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=79.07 E-value=16 Score=37.69 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=72.0
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+..+.+.||.|...-|-+-..+ ..-.++||++.+..
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtV 434 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT-------------HRQFYRSCVITGTI 434 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC-------------CcEEEEeeEEEeec
Confidence 34668899999999986432222333333 57899999999999777654433 34789999998762
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-... .-.|... ++ ...-..+.|.|.+++..
T Consensus 435 D--FIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 435 D--FIFGD------AAAIFQNCLIFVRKPLPNQQNTVTAQ-GRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred c--EEecc------eeEEEEecEEEEecCCCCCCceEEec-CCCCCCCCceEEEEeeEEecC
Confidence 2 33342 567889998864310 1233332 21 12345788999998864
No 94
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=78.60 E-value=15 Score=37.52 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=70.8
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+..+.+.||.|...-|-+-..++ .-.++||++.+..
T Consensus 319 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 385 (548)
T PLN02301 319 AAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHSL-------------RQFYRDSYITGTV 385 (548)
T ss_pred EEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecCC-------------cEEEEeeEEEecc
Confidence 34567899999999986532223334333 578899999999997776655442 3588999998752
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-... .-.|... ++ ...-..+.|.|.++...
T Consensus 386 D--FIFG~------a~avfq~c~i~~~~~~~~~~~~iTAq-gr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 386 D--FIFGN------AAVVFQNCKIVARKPMAGQKNMVTAQ-GRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred c--eeccc------ceeEEeccEEEEecCCCCCCceEEec-CCCCCCCCCEEEEEeeEEecC
Confidence 2 22332 567888888764321 1133322 21 23345778999988764
No 95
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=78.58 E-value=13 Score=37.96 Aligned_cols=113 Identities=16% Similarity=0.152 Sum_probs=71.1
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|..+......+.+. .++.+.+.+|.|...-|-+-..+ ..-.+++|++.+..
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtV 379 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS-------------FRQFYRECDIYGTI 379 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC-------------CceEEEeeEEeecc
Confidence 44568899999999987543333334333 57889999999999777554433 34689999998762
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCc--e--EEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAA--G--VRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~--g--i~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-... + -.|.. +++ ...-..+.|.|.++...
T Consensus 380 D--FIFG~------a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 380 D--YIFGN------AAVVFQACNIVSKMPMPGQFTVITA-QSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred c--eeecc------ceEEEeccEEEEecCCCCCceEEEC-CCCCCCCCCCEEEEEeeEEecC
Confidence 2 22332 567888888865321 1 12322 221 12235778999998754
No 96
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=77.57 E-value=17 Score=37.08 Aligned_cols=114 Identities=12% Similarity=0.078 Sum_probs=68.8
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+....+.+|.|...-|-+-..+ ..-.++||++.+..
T Consensus 309 ~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~-------------~rq~y~~c~I~GtV 375 (538)
T PLN03043 309 AVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS-------------LRQFYRECDIYGTV 375 (538)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC-------------CcEEEEeeEEeecc
Confidence 44557888999999886543233344443 56778889999988777554443 23688888887652
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEec-CCCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDK-GRGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~-g~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. ..-.|.... .....-..+.|.|.++...
T Consensus 376 D--FIFG~------a~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 376 D--FIFGN------AAAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred c--eEeec------ceeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 2 22332 56778888876431 011233221 1112234678888888764
No 97
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=77.34 E-value=9 Score=35.98 Aligned_cols=113 Identities=8% Similarity=0.067 Sum_probs=61.0
Q ss_pred EeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 95 VYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
...++++++|++|.|........++.+. .++.+.+.+|.|...-|-+-..+ ....++||++.+. -
T Consensus 84 v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~QDTL~~~~-------------~r~y~~~c~IeG~-v 149 (298)
T PF01095_consen 84 VNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQDTLYANG-------------GRQYFKNCYIEGN-V 149 (298)
T ss_dssp E-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-STT-EEE-S-------------SEEEEES-EEEES-E
T ss_pred ccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEccccceeeecc-------------ceeEEEeeEEEec-C
Confidence 3467999999999986432122233332 56889999999999777665543 3478899999765 1
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=.|. ....|+||++.-.. .+..|..... ....-....|.|.++...
T Consensus 150 D-FIfG~------~~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 150 D-FIFGN------GTAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp E-EEEES------SEEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred c-EEECC------eeEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 1 33343 24568888887432 1234443211 112345678999998865
No 98
>PLN02197 pectinesterase
Probab=77.27 E-value=19 Score=37.11 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=70.8
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|........++.+. .+....+.+|.|...-|-+...++ .-.+++|++.+..
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~-------------Rqyy~~C~I~GtV 426 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG-------------RQFYRNIVVSGTV 426 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC-------------CEEEEeeEEEecc
Confidence 44567899999999986532233344443 578899999999997776655442 3588999987652
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC--ce--EEEEEecCC---CceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA--AG--VRIKTDKGR---GGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~--~g--i~Ik~~~g~---~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. ....|+||++.-.. .+ -.|.. +++ ...-..+.|.|.++...
T Consensus 427 D--FIFG~------a~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 427 D--FIFGK------SATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred c--ccccc------eeeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecC
Confidence 2 22232 34788999876321 11 13322 222 12335688999998874
No 99
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=77.07 E-value=23 Score=35.92 Aligned_cols=114 Identities=10% Similarity=0.068 Sum_probs=71.1
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .++...+.||.|...-|-+-..++ .-.+++|++.+..
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~I~GtV 355 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHTM-------------RQFYRECRITGTV 355 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCCC-------------CEEEEeeEEeecc
Confidence 45567889999999987543233344443 578899999999987776655442 3678899987752
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. ..-.|..... ....-....|.|.+++..
T Consensus 356 D--FIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 356 D--FIFGD------ATAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred c--EEecC------ceEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 2 22332 45788888887531 1123333211 122334678899888764
No 100
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=76.52 E-value=91 Score=31.57 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=31.1
Q ss_pred eeccEEEeceEEeCCCc----eEEeE-EeeEcEEEEeEEEECCCCCCCCCccccCCCccEEEEeeEEeeCCc
Q 020062 73 NSNNILISNLTFRNSPF----WTIHP-VYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDD 139 (331)
Q Consensus 73 ~~~nv~i~giti~n~~~----~~i~~-~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~nV~I~n~~i~~gDD 139 (331)
..+++..++|+|+|... ..+-+ ..++...+.+|.|.... |-+-.. +..-..++|+|...=|
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQ-----DTLy~~-~~RqyyrdC~I~GtVD 347 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQ-----DALYPH-RDRQFYRECFITGTVD 347 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccC-----cceeeC-CCCEEEEeeEEeeccc
Confidence 35667777777766532 12222 23456666666666543 222222 2344666666655434
No 101
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=76.37 E-value=25 Score=35.44 Aligned_cols=114 Identities=11% Similarity=0.024 Sum_probs=70.1
Q ss_pred EeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 95 VYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
...+++..+|++|.|.........+.+. .+....+.+|.|...-|-+-..+ ..-.+++|++.+..+
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~-------------~RqyyrdC~I~GtVD 347 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR-------------DRQFYRECFITGTVD 347 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC-------------CCEEEEeeEEeeccc
Confidence 3567888999999986533233344443 57889999999998777655443 346888888876522
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEecC-CCceEEeEEEEEEEEcccc
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDKG-RGGYIENITIRNIKMERVK 229 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~g-~~g~i~nV~f~nI~~~~~~ 229 (331)
+=+|. -...|+||++.-... .-.|..... ....-..+.|.|.++....
T Consensus 348 --FIFG~------a~avFq~C~I~sr~~~~~~~~~ITAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 348 --FICGN------AAAVFQFCQIVARQPMMGQSNVITAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred --eEecc------eEEEEEccEEEEecCCCCCCEEEEeCCCCCCCCCcEEEEEeeEEecCC
Confidence 22332 567888888864321 123433211 1122345788888887653
No 102
>PLN02176 putative pectinesterase
Probab=76.08 E-value=22 Score=34.08 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=9.4
Q ss_pred eeccEEEeceEEeCC
Q 020062 73 NSNNILISNLTFRNS 87 (331)
Q Consensus 73 ~~~nv~i~giti~n~ 87 (331)
.++++..+||++.|.
T Consensus 120 ~a~~F~a~nlT~~Nt 134 (340)
T PLN02176 120 YASNIIITGITFKNT 134 (340)
T ss_pred ECCCEEEEeeEEEeC
Confidence 356666666666664
No 103
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=75.72 E-value=21 Score=36.26 Aligned_cols=114 Identities=11% Similarity=0.130 Sum_probs=69.6
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|..+......+.+. .+..+.+.+|.|...-|-+-..++ .-.+++|++.+..
T Consensus 301 ~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~-------------Rqyy~~C~IeGtV 367 (530)
T PLN02933 301 GVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA-------------KQFYRECDIYGTI 367 (530)
T ss_pred EEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC-------------ceEEEeeEEeccc
Confidence 34567889999999986533223344443 578899999999987776544432 3588999987752
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. ..-.|..... ....-..+.|.|.++...
T Consensus 368 D--FIFG~------a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 368 D--FIFGN------AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred c--eeccC------ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 2 22332 45678888876432 1123333211 112234678999988764
No 104
>PLN02497 probable pectinesterase
Probab=75.42 E-value=47 Score=31.68 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=70.1
Q ss_pred EEeeEcEEEEeEEEECCCCCC-------CCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEE
Q 020062 94 PVYCRNVVIKGMTILAPLNAP-------NTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRR 165 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~-------n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~n 165 (331)
....+++..+|++|.|....+ ....+.+. ..+.+.+.||.|...-|-+-... ..-.++|
T Consensus 111 ~v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~-------------gRqyf~~ 177 (331)
T PLN02497 111 STLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD-------------GRHYFKR 177 (331)
T ss_pred EEecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC-------------CcEEEEe
Confidence 345679999999999874311 11223222 57889999999999777664433 3478999
Q ss_pred EEEeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCc------eEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 166 VSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAA------GVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 166 c~~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~------gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
|++.+..+ +=+|. -...|+||++.-... .-.|..... ....-....|.|.+++..
T Consensus 178 C~IeG~VD--FIFG~------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 178 CTIQGAVD--FIFGS------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred CEEEeccc--EEccC------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 99976522 22332 457889998874321 123433211 112334667889988863
No 105
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=75.30 E-value=15 Score=38.38 Aligned_cols=112 Identities=10% Similarity=0.099 Sum_probs=71.7
Q ss_pred EeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 95 VYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
...+++..+|++|.|.........+.+. .++...+.||.|...-|-+...+ ..-.+++|++.+..
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~-------------~Rqyy~~C~I~GtV- 399 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS-------------HRQFYRDCTISGTI- 399 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC-------------CcEEEEeCEEEEec-
Confidence 4567889999999987543333444443 57889999999998777654443 34688999987652
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. ..-.|... ++ ...-..+.|.|.++...
T Consensus 400 D-FIFG~------a~avfq~C~I~~r~~~~~~~~~ITAq-gr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 400 D-FLFGD------AAAVFQNCTLLVRKPLLNQACPITAH-GRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred c-EEecC------ceEEEEccEEEEccCCCCCceeEecC-CCCCCCCCceEEEEeeEEecC
Confidence 2 22332 45788999887431 11234332 22 13345688999999875
No 106
>PLN02176 putative pectinesterase
Probab=75.11 E-value=80 Score=30.27 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=51.6
Q ss_pred eeEcEEEEeEEEECCCCC------CCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEE
Q 020062 96 YCRNVVIKGMTILAPLNA------PNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSG 168 (331)
Q Consensus 96 ~s~nV~i~n~~i~~~~~~------~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~ 168 (331)
..+++..+|++|.|.... .....+.+. ..+.+.+.||.|...-|-+-..++ .-.+++|++
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~g-------------Rqyf~~CyI 186 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGKG-------------RHYYKRCVI 186 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCCc-------------CEEEEecEE
Confidence 578899999999986421 112233232 578899999999997776654432 367777777
Q ss_pred eCCCCCEEEEeccccCCEEEEEEEeeEEe
Q 020062 169 TTPTCSGVGIGSEMSGGIFNVTVDQLHVW 197 (331)
Q Consensus 169 ~~~~~~gi~iGs~~~g~i~nI~~~n~~i~ 197 (331)
.+. -+ +=+|. -...|+||++.
T Consensus 187 eG~-VD-FIFG~------a~a~Fe~C~I~ 207 (340)
T PLN02176 187 SGG-ID-FIFGY------AQSIFEGCTLK 207 (340)
T ss_pred Eec-cc-EEecC------ceEEEeccEEE
Confidence 665 22 22232 34667777775
No 107
>PLN02314 pectinesterase
Probab=74.98 E-value=20 Score=36.90 Aligned_cols=114 Identities=13% Similarity=0.134 Sum_probs=71.9
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+....+.||.|...-|-+-..+ ..-.++||++.+..
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~rq~y~~C~I~Gtv 427 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS-------------NRQFYRDCDITGTI 427 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC-------------CCEEEEeeEEEecc
Confidence 34667899999999987532223334333 57888999999999777655443 23688999998762
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecCC--CceEEeEEEEEEEEcccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKGR--GGYIENITIRNIKMERVK 229 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g~--~g~i~nV~f~nI~~~~~~ 229 (331)
+ +=+|. -...|+||.+.-.. ..-.|.. +++ ...-..+.|.|.++....
T Consensus 428 D--FIFG~------a~avf~~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 428 D--FIFGN------AAVVFQNCNIQPRQPLPNQFNTITA-QGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred c--eeccC------ceeeeeccEEEEecCCCCCCceEec-CCCCCCCCCCEEEEEeeEEecCC
Confidence 2 22332 56788888886431 0113332 222 233456789999988753
No 108
>PLN02304 probable pectinesterase
Probab=74.50 E-value=32 Score=33.46 Aligned_cols=113 Identities=7% Similarity=0.061 Sum_probs=68.9
Q ss_pred EEeeEcEEEEeEEEECCCCC-----CCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEE
Q 020062 94 PVYCRNVVIKGMTILAPLNA-----PNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVS 167 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~-----~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~ 167 (331)
....+++..+|++|.|.... ....++.+. .++.+.+.+|.|...-|-+-... ..-.++||+
T Consensus 158 ~v~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~-------------gR~Yf~~Cy 224 (379)
T PLN02304 158 QVFASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR-------------GRHYFKDCY 224 (379)
T ss_pred EEECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC-------------CCEEEEeeE
Confidence 34568899999999986421 112233332 57899999999999777665443 237899999
Q ss_pred EeCCCCCEEEEeccccCCEEEEEEEeeEEeCCCce---------EEEEEec-CCCceEEeEEEEEEEEcc
Q 020062 168 GTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAG---------VRIKTDK-GRGGYIENITIRNIKMER 227 (331)
Q Consensus 168 ~~~~~~~gi~iGs~~~g~i~nI~~~n~~i~~~~~g---------i~Ik~~~-g~~g~i~nV~f~nI~~~~ 227 (331)
+.+. -+ +=+|. -...|+||++.....+ -.|.... .....-....|.|.++..
T Consensus 225 IeG~-VD-FIFG~------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg 286 (379)
T PLN02304 225 IQGS-ID-FIFGD------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGG 286 (379)
T ss_pred Eccc-cc-EEecc------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEcc
Confidence 9765 22 23342 4568888888753221 1333321 111223456688888875
No 109
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=74.46 E-value=4 Score=26.25 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=20.4
Q ss_pred ccccCCCccEEEEeeEEeeCCceEEEcc
Q 020062 118 GIDPDSSTNVCIEDCYIESGDDLVAVKS 145 (331)
Q Consensus 118 Gi~~~~s~nV~I~n~~i~~gDD~iai~s 145 (331)
||.+..|.+.+|++..+....++|.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~ 28 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD 28 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe
Confidence 5666667777788888887666777765
No 110
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=74.43 E-value=21 Score=36.63 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=70.4
Q ss_pred EeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 95 VYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
...+++..+|++|.|.........+.+. .+....+.+|.|...-|-+-..+ ..-.+++|++.+..+
T Consensus 344 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD 410 (572)
T PLN02990 344 INGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS-------------HRQFFRDCTVSGTVD 410 (572)
T ss_pred EEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC-------------CcEEEEeeEEecccc
Confidence 4567889999999987543233344443 57889999999998777554443 236789999987622
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCCC--c--eEEEEEecCC--CceEEeEEEEEEEEcccc
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDAA--A--GVRIKTDKGR--GGYIENITIRNIKMERVK 229 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~~--~--gi~Ik~~~g~--~g~i~nV~f~nI~~~~~~ 229 (331)
+=+|. -...|+||++.-.. . .-.|... ++ ...-..+.|.|.++....
T Consensus 411 --FIFG~------a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 411 --FIFGD------AKVVLQNCNIVVRKPMKGQSCMITAQ-GRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred --eEccC------ceEEEEccEEEEecCCCCCceEEEeC-CCCCCCCCceEEEEeeEEecCc
Confidence 22332 45788888886431 1 1233332 21 122356889999988753
No 111
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=73.77 E-value=20 Score=37.01 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=71.3
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+....+.||.|...-|-+-..+ ..-.+++|++.+..
T Consensus 356 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtV 422 (587)
T PLN02484 356 AATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS-------------NRQFFRECDIYGTV 422 (587)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC-------------CcEEEEecEEEecc
Confidence 44567899999999987542223334333 57889999999998777654443 23688999987652
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCC----ceEEEEEecC-CCceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAA----AGVRIKTDKG-RGGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~----~gi~Ik~~~g-~~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. -...|+||++.-.. ..-.|..... ....-..+.|.|.++...
T Consensus 423 D--FIFG~------a~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 423 D--FIFGN------AAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred c--eeccc------ceeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 2 22332 56788999886431 1123333211 123345788999999764
No 112
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=73.73 E-value=72 Score=29.10 Aligned_cols=99 Identities=18% Similarity=0.181 Sum_probs=59.7
Q ss_pred ccEEEEEEEEeCCCCCEEEEecc-ccCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccccccEEEEcc
Q 020062 159 SNIIVRRVSGTTPTCSGVGIGSE-MSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRG 237 (331)
Q Consensus 159 ~nI~i~nc~~~~~~~~gi~iGs~-~~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~~~~i~i~~~ 237 (331)
.+.+|+||+|......||.+-.. ....+.+++|+...+.....|+.+.... .+ +.| .++|-.+++-..++.+...
T Consensus 122 s~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~~--~~-~~n-~I~NN~I~~N~~Gi~~~~~ 197 (246)
T PF07602_consen 122 SSPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDNA--AP-VEN-KIENNIIENNNIGIVAIGD 197 (246)
T ss_pred CCcEEEeeEEECCccccEEEEeeecCCcccceEeecceEEecCcCeEEEccc--CC-ccc-eeeccEEEeCCcCeEeecc
Confidence 48999999998755788877443 2457888889999998888899887543 22 222 2244455544446655432
Q ss_pred CCCCCCCCCC---CCCCCeEeeEEEEEEEE
Q 020062 238 SNDHPDEGWD---PKALPKIRGISFVNVVS 264 (331)
Q Consensus 238 y~~~~~~~~~---~~~~~~i~nIt~~NI~~ 264 (331)
- |+.... ..+.-.|++=..-||..
T Consensus 198 ~---pDlG~~s~~~~g~N~~~~N~~~Dl~~ 224 (246)
T PF07602_consen 198 A---PDLGTGSEGSPGNNIFRNNGRYDLNN 224 (246)
T ss_pred C---CccccCCCCCCCCcEEecCcceeeEe
Confidence 1 222111 11222566666666665
No 113
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=72.35 E-value=25 Score=36.34 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=69.7
Q ss_pred EEeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCC
Q 020062 94 PVYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPT 172 (331)
Q Consensus 94 ~~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~ 172 (331)
....+++..+|++|.|.........+.+. .+....+.||.|...-|-+-..++ .-.+++|++.+..
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~~-------------rq~y~~c~I~Gtv 424 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHSN-------------RQFFVKCHITGTV 424 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCCC-------------cEEEEeeEEeecc
Confidence 34567889999999987543233333333 578889999999987776544432 3588888887652
Q ss_pred CCEEEEeccccCCEEEEEEEeeEEeCCCc--e--EEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 173 CSGVGIGSEMSGGIFNVTVDQLHVWDAAA--G--VRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 173 ~~gi~iGs~~~g~i~nI~~~n~~i~~~~~--g--i~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
+ +=+|. ....|+||++.-... + -.|... ++ ...-..+.|.|.++...
T Consensus 425 D--FIFG~------a~avfq~c~i~~r~~~~~~~~~iTAq-gr~~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 425 D--FIFGN------AAAVLQDCDINARRPNSGQKNMVTAQ-GRSDPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred c--eeccc------eeEEEEccEEEEecCCCCCcceEEec-CCCCCCCCceEEEEecEEecC
Confidence 2 22232 567888888764311 1 133322 21 22345678888888764
No 114
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=71.88 E-value=51 Score=32.50 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=46.9
Q ss_pred EEEEeeccEEEeceEEeCC--Cc--e---EEeE--EeeEcEEEEeEEEECCCCCCCCCc--ccc----CCCccEEEEeeE
Q 020062 69 VELMNSNNILISNLTFRNS--PF--W---TIHP--VYCRNVVIKGMTILAPLNAPNTDG--IDP----DSSTNVCIEDCY 133 (331)
Q Consensus 69 i~~~~~~nv~i~giti~n~--~~--~---~i~~--~~s~nV~i~n~~i~~~~~~~n~DG--i~~----~~s~nV~I~n~~ 133 (331)
|.+. .+.++|+|+++++. |. + .... ..+.+.++.++.|..-.. +..+. .-+ ...+|-+|++|.
T Consensus 62 l~i~-G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~ 139 (425)
T PF14592_consen 62 LRIS-GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNY 139 (425)
T ss_dssp EEE--SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-E
T ss_pred EEEE-eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccE
Confidence 4444 47888888888753 21 1 1111 246778888888875321 11111 111 246777888888
Q ss_pred EeeC---CceEEEcc-CCCccCcccCCCcccEEEEEEEEeC------CCCCEEEEecc-ccCCEEEEEEEeeEEeCCC--
Q 020062 134 IESG---DDLVAVKS-GWDHYGIAMARPSSNIIVRRVSGTT------PTCSGVGIGSE-MSGGIFNVTVDQLHVWDAA-- 200 (331)
Q Consensus 134 i~~g---DD~iai~s-~~~~~g~~~~~~~~nI~i~nc~~~~------~~~~gi~iGs~-~~g~i~nI~~~n~~i~~~~-- 200 (331)
|... +--+.+.. ..... .....-+|.+++|.. ..+-.|+||.- .+-.-++.+|++..|.+.+
T Consensus 140 F~gK~~~G~~l~V~~~~~~~~-----~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlFe~cdGE 214 (425)
T PF14592_consen 140 FQGKTNRGPTLAVRVILNGSQ-----SIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLFERCDGE 214 (425)
T ss_dssp EE---SSS-SEEE--S--SS------------EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EEEEE-SS
T ss_pred eeccccCCcEEEEEecccCcc-----ccccCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchhhhcCCc
Confidence 8763 22233321 00000 123455678887741 11445777742 2222245555555554442
Q ss_pred -ceEEEEE
Q 020062 201 -AGVRIKT 207 (331)
Q Consensus 201 -~gi~Ik~ 207 (331)
.-|.+|+
T Consensus 215 ~EIISvKS 222 (425)
T PF14592_consen 215 VEIISVKS 222 (425)
T ss_dssp SEEEEEES
T ss_pred eeEEEeec
Confidence 3455554
No 115
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=71.05 E-value=25 Score=35.89 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=68.9
Q ss_pred EeeEcEEEEeEEEECCCCCCCCCccccC-CCccEEEEeeEEeeCCceEEEccCCCccCcccCCCcccEEEEEEEEeCCCC
Q 020062 95 VYCRNVVIKGMTILAPLNAPNTDGIDPD-SSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSNIIVRRVSGTTPTC 173 (331)
Q Consensus 95 ~~s~nV~i~n~~i~~~~~~~n~DGi~~~-~s~nV~I~n~~i~~gDD~iai~s~~~~~g~~~~~~~~nI~i~nc~~~~~~~ 173 (331)
...+++..+|++|.|.........+.+. .++...+.+|.|...-|-+-..+ ..-.+++|++.+..+
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~-------------~Rqyy~~C~I~GtVD 375 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS-------------QRQFYRECYIYGTVD 375 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC-------------CceEEEeeEEeeccc
Confidence 4567888899999886532223344443 57888999999988777554433 235888998876522
Q ss_pred CEEEEeccccCCEEEEEEEeeEEeCCCc----eEEEEEecCC--CceEEeEEEEEEEEccc
Q 020062 174 SGVGIGSEMSGGIFNVTVDQLHVWDAAA----GVRIKTDKGR--GGYIENITIRNIKMERV 228 (331)
Q Consensus 174 ~gi~iGs~~~g~i~nI~~~n~~i~~~~~----gi~Ik~~~g~--~g~i~nV~f~nI~~~~~ 228 (331)
+=+|. -...|+||++.-... .-.|.. +++ ...-..+.|.|.++...
T Consensus 376 --FIFG~------a~avf~~C~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 376 --FIFGN------AAAVFQNCIILPRRPLKGQANVITA-QGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred --eEecc------cceEEeccEEEEecCCCCCcceEec-CCCCCCCCCceEEEEeeEEecC
Confidence 22332 456788888764321 123332 221 13346788999988874
No 116
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=56.89 E-value=30 Score=33.92 Aligned_cols=92 Identities=23% Similarity=0.237 Sum_probs=49.2
Q ss_pred CCccEEEEeeEEe-eCCceEEEccCCC----cc---Cccc-----CCCcccEEEEEEEEeCCCCCEEEEeccc-cCCEEE
Q 020062 123 SSTNVCIEDCYIE-SGDDLVAVKSGWD----HY---GIAM-----ARPSSNIIVRRVSGTTPTCSGVGIGSEM-SGGIFN 188 (331)
Q Consensus 123 ~s~nV~I~n~~i~-~gDD~iai~s~~~----~~---g~~~-----~~~~~nI~i~nc~~~~~~~~gi~iGs~~-~g~i~n 188 (331)
.+-|...+|+..- +-.|++-+++.++ .+ .+.+ ..--.|-.|+|..... +.|+.+|... .+.++|
T Consensus 262 RnYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~--~lGVG~~~DG~~~yvsn 339 (549)
T PF09251_consen 262 RNYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRG--SLGVGIGMDGKGGYVSN 339 (549)
T ss_dssp -EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES---SSESCEEECCS-EEEE
T ss_pred ceeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheec--cceeeeeecCCCceEee
Confidence 4467777777654 4678898888632 11 0111 1124678899988876 5778777654 457899
Q ss_pred EEEEeeEEeCCCceEEEEEecCCCceEEeEEEEEEEEccc
Q 020062 189 VTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERV 228 (331)
Q Consensus 189 I~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~nI~~~~~ 228 (331)
|++++| ...|+.+++. +=.|.||++-+.
T Consensus 340 i~~~d~----~g~G~~~~~~--------~~~ftNitvId~ 367 (549)
T PF09251_consen 340 ITVQDC----AGAGIFIRGT--------NKVFTNITVIDT 367 (549)
T ss_dssp EEEES-----SSESEEEECC--------S-EEEEEEEES-
T ss_pred EEeecc----cCCceEEeec--------CCceeeeEEEec
Confidence 999888 3567777654 223666665543
No 117
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=49.16 E-value=1.4e+02 Score=25.98 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=18.3
Q ss_pred cEEEEEEEEeCCCCCEEEE-ecc---ccCCEEEEEEEeeEEeCC
Q 020062 160 NIIVRRVSGTTPTCSGVGI-GSE---MSGGIFNVTVDQLHVWDA 199 (331)
Q Consensus 160 nI~i~nc~~~~~~~~gi~i-Gs~---~~g~i~nI~~~n~~i~~~ 199 (331)
||.|-|..++...+-||=+ |.. .....+||++++..|.++
T Consensus 3 dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~t 46 (198)
T PF08480_consen 3 DIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDT 46 (198)
T ss_pred ceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecC
Confidence 4555555555444444422 221 122344555555555554
No 118
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=47.37 E-value=58 Score=30.96 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=7.0
Q ss_pred eeEcEEEEeEEEEC
Q 020062 96 YCRNVVIKGMTILA 109 (331)
Q Consensus 96 ~s~nV~i~n~~i~~ 109 (331)
..+.+.++||++..
T Consensus 219 dgDka~frnv~llg 232 (405)
T COG4677 219 DGDKAIFRNVNLLG 232 (405)
T ss_pred cCCceeeeeeeEee
Confidence 34445555555554
No 119
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=45.85 E-value=31 Score=18.30 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=4.6
Q ss_pred cEEEEeeEEee
Q 020062 126 NVCIEDCYIES 136 (331)
Q Consensus 126 nV~I~n~~i~~ 136 (331)
+++|++|.|..
T Consensus 3 ~~~i~~n~i~~ 13 (26)
T smart00710 3 NVTIENNTIRN 13 (26)
T ss_pred CEEEECCEEEe
Confidence 34444444443
No 120
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=36.94 E-value=3.1e+02 Score=24.51 Aligned_cols=133 Identities=15% Similarity=0.079 Sum_probs=79.8
Q ss_pred EEEEEeeccEEEeceEEeCCCceEEeEEeeEcEEEEeEEEECCCCCCCCCccccCCCc-cEEEEeeEEeeCCceEEEccC
Q 020062 68 LVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSST-NVCIEDCYIESGDDLVAVKSG 146 (331)
Q Consensus 68 ~i~~~~~~nv~i~giti~n~~~~~i~~~~s~nV~i~n~~i~~~~~~~n~DGi~~~~s~-nV~I~n~~i~~gDD~iai~s~ 146 (331)
++.+. ...+++++.|-.++..+||... +.+|+|+.... -..|++.+.... .++|.+.-.+..+|=| |...
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV-~Q~N 126 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKV-FQHN 126 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEE-EEE-
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccE-EEec
Confidence 34444 6789999999777778898877 78888888775 357888887666 8899998888876644 2221
Q ss_pred CCccCcccCCCcccEEEEEEEEeCCCCCEEEEecc---c--cCCEEEEEEEeeEEeCCCceEEEEEecCCCceEEeEEEE
Q 020062 147 WDHYGIAMARPSSNIIVRRVSGTTPTCSGVGIGSE---M--SGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIR 221 (331)
Q Consensus 147 ~~~~g~~~~~~~~nI~i~nc~~~~~~~~gi~iGs~---~--~g~i~nI~~~n~~i~~~~~gi~Ik~~~g~~g~i~nV~f~ 221 (331)
..-.+.|+|-+.. ..|--.=|- . .+.=+.|.+++........-..|-...++...|+++...
T Consensus 127 ----------g~Gtv~I~nF~a~---d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~ 193 (215)
T PF03211_consen 127 ----------GGGTVTIKNFYAE---DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIK 193 (215)
T ss_dssp ----------SSEEEEEEEEEEE---EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEE
T ss_pred ----------CceeEEEEeEEEc---CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEec
Confidence 1234777775443 222222111 1 123456777765543322223455556667778777777
Q ss_pred E
Q 020062 222 N 222 (331)
Q Consensus 222 n 222 (331)
.
T Consensus 194 ~ 194 (215)
T PF03211_consen 194 G 194 (215)
T ss_dssp E
T ss_pred C
Confidence 6
No 121
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=33.86 E-value=3.5e+02 Score=26.83 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=18.8
Q ss_pred CCEEEEEEEeeEEeCCCceEEEEEec------------CCCceEEeEEEEEEEEccc
Q 020062 184 GGIFNVTVDQLHVWDAAAGVRIKTDK------------GRGGYIENITIRNIKMERV 228 (331)
Q Consensus 184 g~i~nI~~~n~~i~~~~~gi~Ik~~~------------g~~g~i~nV~f~nI~~~~~ 228 (331)
..++|+++.+.++.++..+|.+..-. -+...-.+++|.|-.+.+.
T Consensus 307 ~qv~nv~I~~NT~In~~~~i~~g~g~~~~~~~~~~~~~i~s~~p~~~~~~nN~i~~~ 363 (425)
T PF14592_consen 307 DQVKNVLIANNTFINCKSPIHFGAGSDEERKDVLPASNIRSARPINSTFANNIIYND 363 (425)
T ss_dssp ---BSEEEES-EEES-SEEEESST-THHHHHHHHHHCT---B---SEEEES-EEE--
T ss_pred cccceeEEecceEEccCCceEEccccccccccccccccccccCCceEEeeCCeEEcC
Confidence 34677777777777776566654310 0123345666666555554
No 122
>PF03077 VacA2: Putative vacuolating cytotoxin; InterPro: IPR004311 Proteins containing this domain include a number of Helicobacter pylori outer membrane proteins with multiple copies of this small conserved region.
Probab=30.97 E-value=1.3e+02 Score=21.07 Aligned_cols=44 Identities=32% Similarity=0.538 Sum_probs=31.6
Q ss_pred ceeeeEEEeCCeEEEcCCchhhcccccCCCCCCCceEEEEEeeccEEEeceEEeCCC
Q 020062 32 HLTNVIITGYNGTIDGQGQMWWDLWWNRTLKHTRGHLVELMNSNNILISNLTFRNSP 88 (331)
Q Consensus 32 ~~~nV~I~G~~G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~giti~n~~ 88 (331)
++++|=|+|. | +.|..|-. .....|.|...+++++.+.++.+..
T Consensus 11 ~A~~IyiT~t---i-~sGN~~~t---------GGgA~l~Fna~~~it~~~a~~~n~~ 54 (60)
T PF03077_consen 11 NAKNIYITGT---I-GSGNAWGT---------GGGATLNFNATNNITINGANIDNNK 54 (60)
T ss_pred ccceEEEecc---c-ccCCcccc---------CCCeEEEEeccceEEEccceEeccc
Confidence 5788888885 4 35555532 2234699999999999999988754
No 123
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=22.07 E-value=1.9e+02 Score=28.69 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=7.2
Q ss_pred EEEEEeeccEEE
Q 020062 68 LVELMNSNNILI 79 (331)
Q Consensus 68 ~i~~~~~~nv~i 79 (331)
.+.+++|.|.+|
T Consensus 355 svyIykC~~s~i 366 (480)
T KOG2675|consen 355 SVYIYKCSNSTI 366 (480)
T ss_pred eEEEEeccceEE
Confidence 466666666554
Done!