BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020063
         (331 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
           C5a Peptidase From Streptococcus Pyogenes (Scpa)
          Length = 936

 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGV 209
             LI RG   F+DKI NA+ AG    ++Y++++KG  + +    +   + A F+S + G+
Sbjct: 292 IALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ---MPAAFISRKDGL 348

Query: 210 YLKEHAR 216
            LK++++
Sbjct: 349 LLKDNSK 355


>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
 pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
           Bestatin
          Length = 421

 Score = 38.1 bits (87), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGV 209
             LI RG   F DK+RNA   G +A I+YN+ + G L       +   V A+ ++ + G 
Sbjct: 117 IALIQRGNISFADKVRNAAKQGAKAVIIYNNTD-GKLNGTLGGSDASFVAAVGITKQEGD 175

Query: 210 YLKEHAR 216
            L  + R
Sbjct: 176 ALAANLR 182


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 17/23 (73%)

Query: 299 ETCAICLEDYQDGEKLKVLSCKH 321
           E CA+CLED++  ++L +  CKH
Sbjct: 16  ELCAVCLEDFKPRDELGICPCKH 38


>pdb|3ICU|A Chain A, Protease-Associated Domain Of The E3 Ligase Grail
          Length = 194

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%)

Query: 131 DACSPLSN---PVASNDADHINFVLIVR--GQCIFEDKIRNAQAAGYRAAIVYN-DREKG 184
           +AC+P +N   P        ++++ +++  G C F DKI  A   G   A+++N    + 
Sbjct: 84  NACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRN 143

Query: 185 SLVSMTASHEG-VKVHAIFV-SLETGVYLKEHARGETGECCIFPESNRGSW 233
            ++ M  SH G V + AI + +L+    L+   RG      I      G W
Sbjct: 144 EVIPM--SHPGAVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPW 192


>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
           Finger) Domain Of Ring Finger Protein 126
          Length = 78

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 288 SSASSSQCHGGETCAICLEDYQDGEKLKVLSCKH 321
           SS +      G  C +C EDY  GE ++ L C H
Sbjct: 5   SSGTEEHVGSGLECPVCKEDYALGESVRQLPCNH 38


>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
          Length = 55

 Score = 28.1 bits (61), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 298 GETCAICLEDYQDGEKLKVL-SCKHG 322
           G  CA+CL + +DGE+ + L  C HG
Sbjct: 5   GVECAVCLAELEDGEEARFLPRCGHG 30


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,688,860
Number of Sequences: 62578
Number of extensions: 319854
Number of successful extensions: 479
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 474
Number of HSP's gapped (non-prelim): 7
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)