Query 020063
Match_columns 331
No_of_seqs 303 out of 2401
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 100.0 1.7E-47 3.6E-52 363.9 15.0 231 98-330 30-261 (348)
2 cd02126 PA_EDEM3_like PA_EDEM3 99.9 1.4E-23 3.1E-28 176.0 13.0 114 106-223 2-125 (126)
3 cd02123 PA_C_RZF_like PA_C-RZF 99.9 1.7E-23 3.7E-28 181.1 13.8 127 93-220 10-142 (153)
4 cd02125 PA_VSR PA_VSR: Proteas 99.9 1.8E-22 4E-27 169.4 12.8 113 110-223 1-126 (127)
5 cd02127 PA_hPAP21_like PA_hPAP 99.9 3.9E-22 8.4E-27 165.4 13.1 109 110-222 1-114 (118)
6 cd02122 PA_GRAIL_like PA _GRAI 99.9 4.8E-22 1.1E-26 169.1 13.4 117 106-224 17-138 (138)
7 cd02132 PA_GO-like PA_GO-like: 99.9 4.6E-22 1E-26 169.5 13.3 117 99-223 14-138 (139)
8 cd04813 PA_1 PA_1: Protease-as 99.8 1.9E-20 4.1E-25 155.0 11.0 104 106-216 5-110 (117)
9 cd04818 PA_subtilisin_1 PA_sub 99.8 3.4E-19 7.4E-24 147.3 13.0 113 107-223 1-117 (118)
10 cd02129 PA_hSPPL_like PA_hSPPL 99.8 3.9E-19 8.5E-24 147.3 10.4 93 121-216 21-113 (120)
11 cd04816 PA_SaNapH_like PA_SaNa 99.8 2.8E-18 6.1E-23 142.9 12.7 113 108-223 5-121 (122)
12 cd02130 PA_ScAPY_like PA_ScAPY 99.7 1.7E-17 3.6E-22 138.1 12.8 113 103-223 8-121 (122)
13 cd04817 PA_VapT_like PA_VapT_l 99.7 9.6E-16 2.1E-20 130.3 12.9 99 111-216 27-132 (139)
14 cd02124 PA_PoS1_like PA_PoS1_l 99.6 3.2E-15 7E-20 125.8 11.0 94 123-223 34-128 (129)
15 KOG3920 Uncharacterized conser 99.6 1.8E-15 3.9E-20 128.4 4.6 116 97-216 38-162 (193)
16 PF02225 PA: PA domain; Inter 99.6 2.2E-15 4.9E-20 120.1 4.9 94 119-215 5-101 (101)
17 KOG2442 Uncharacterized conser 99.5 2.4E-14 5.2E-19 140.2 10.2 142 100-251 51-200 (541)
18 cd00538 PA PA: Protease-associ 99.5 2.9E-13 6.2E-18 111.9 9.4 97 125-223 25-125 (126)
19 cd02133 PA_C5a_like PA_C5a_lik 99.4 1.1E-11 2.5E-16 105.8 12.8 105 109-223 15-119 (143)
20 cd04819 PA_2 PA_2: Protease-as 99.2 1.4E-10 3.1E-15 97.3 11.0 100 117-222 20-125 (127)
21 COG5540 RING-finger-containing 99.1 7.2E-13 1.6E-17 123.2 -5.9 35 296-330 321-355 (374)
22 cd04815 PA_M28_2 PA_M28_2: Pro 99.1 1E-10 2.3E-15 99.1 7.2 109 110-223 7-133 (134)
23 cd02120 PA_subtilisin_like PA_ 99.0 1.4E-09 3.1E-14 90.3 8.6 82 129-217 36-118 (126)
24 cd02128 PA_TfR PA_TfR: Proteas 99.0 1.3E-09 2.9E-14 96.6 7.0 114 103-219 12-157 (183)
25 PF13639 zf-RING_2: Ring finge 98.8 6.9E-10 1.5E-14 75.9 -0.7 32 299-330 1-32 (44)
26 PHA02929 N1R/p28-like protein; 98.3 1.5E-07 3.3E-12 86.8 0.5 61 271-331 147-212 (238)
27 cd02121 PA_GCPII_like PA_GCPII 98.3 1.9E-06 4.1E-11 78.9 7.5 107 108-218 34-190 (220)
28 cd04822 PA_M28_1_3 PA_M28_1_3: 98.2 8.9E-06 1.9E-10 70.3 10.3 93 118-214 18-131 (151)
29 cd04820 PA_M28_1_1 PA_M28_1_1: 98.1 1.8E-05 4E-10 67.3 8.3 63 117-182 19-96 (137)
30 PF12678 zf-rbx1: RING-H2 zinc 98.1 1.1E-06 2.5E-11 66.7 0.8 34 298-331 19-62 (73)
31 cd04814 PA_M28_1 PA_M28_1: Pro 98.0 2.7E-05 5.9E-10 66.6 8.3 61 119-182 19-100 (142)
32 cd02131 PA_hNAALADL2_like PA_h 97.6 7.3E-05 1.6E-09 64.3 5.0 60 118-182 13-75 (153)
33 cd00162 RING RING-finger (Real 97.5 3.3E-05 7.2E-10 51.3 0.8 28 300-329 1-28 (45)
34 KOG0801 Predicted E3 ubiquitin 97.4 4.7E-05 1E-09 65.6 0.7 29 297-325 176-204 (205)
35 COG5243 HRD1 HRD ubiquitin lig 97.2 4.1E-05 8.9E-10 73.8 -1.6 53 274-330 267-329 (491)
36 PF13923 zf-C3HC4_2: Zinc fing 97.2 0.0001 2.2E-09 48.8 0.8 28 301-330 1-28 (39)
37 PF00097 zf-C3HC4: Zinc finger 97.2 7.3E-05 1.6E-09 49.8 0.0 28 301-330 1-28 (41)
38 smart00184 RING Ring finger. E 97.2 0.00012 2.6E-09 46.8 0.5 26 301-329 1-26 (39)
39 PF14634 zf-RING_5: zinc-RING 97.1 0.00015 3.2E-09 49.4 0.8 30 300-329 1-30 (44)
40 KOG0802 E3 ubiquitin ligase [P 97.0 0.00013 2.7E-09 75.5 -0.8 35 297-331 290-326 (543)
41 PF13445 zf-RING_UBOX: RING-ty 96.6 0.0006 1.3E-08 46.4 0.4 28 301-329 1-29 (43)
42 KOG0804 Cytoplasmic Zn-finger 96.6 0.00072 1.6E-08 66.8 1.1 35 297-331 174-209 (493)
43 PF12861 zf-Apc11: Anaphase-pr 96.5 0.00058 1.3E-08 53.2 -0.3 34 298-331 21-64 (85)
44 PHA02926 zinc finger-like prot 96.3 0.00039 8.4E-09 63.2 -2.8 37 295-331 167-209 (242)
45 smart00744 RINGv The RING-vari 96.2 0.0012 2.7E-08 46.1 -0.1 31 300-331 1-36 (49)
46 PF10367 Vps39_2: Vacuolar sor 95.4 0.011 2.4E-07 47.2 2.5 31 297-328 77-107 (109)
47 PF13920 zf-C3HC4_3: Zinc fing 95.3 0.0058 1.3E-07 42.5 0.6 29 298-329 2-31 (50)
48 KOG1734 Predicted RING-contain 94.9 0.0068 1.5E-07 56.5 -0.0 33 297-329 223-262 (328)
49 PF15227 zf-C3HC4_4: zinc fing 94.8 0.013 2.8E-07 39.5 1.0 26 301-329 1-26 (42)
50 KOG4445 Uncharacterized conser 94.7 0.0084 1.8E-07 56.7 -0.0 32 298-329 115-146 (368)
51 KOG0828 Predicted E3 ubiquitin 94.7 0.0045 9.8E-08 62.0 -2.0 35 297-331 570-618 (636)
52 PF05883 Baculo_RING: Baculovi 94.6 0.0061 1.3E-07 51.4 -1.1 34 298-331 26-65 (134)
53 KOG0320 Predicted E3 ubiquitin 94.3 0.014 3.1E-07 51.3 0.4 31 296-328 129-160 (187)
54 PF11793 FANCL_C: FANCL C-term 94.0 0.016 3.5E-07 43.6 0.1 34 298-331 2-40 (70)
55 PF14446 Prok-RING_1: Prokaryo 93.0 0.072 1.6E-06 38.0 2.0 31 298-328 5-36 (54)
56 cd04821 PA_M28_1_2 PA_M28_1_2: 92.5 0.17 3.6E-06 44.2 4.1 37 146-182 48-103 (157)
57 COG5194 APC11 Component of SCF 92.3 0.038 8.2E-07 42.4 -0.1 33 299-331 32-66 (88)
58 KOG1493 Anaphase-promoting com 92.3 0.013 2.7E-07 44.6 -2.6 33 299-331 21-63 (84)
59 smart00504 Ubox Modified RING 92.2 0.052 1.1E-06 39.1 0.5 29 299-330 2-30 (63)
60 KOG0317 Predicted E3 ubiquitin 88.5 0.67 1.5E-05 43.9 4.6 32 297-331 238-269 (293)
61 KOG1941 Acetylcholine receptor 88.3 0.089 1.9E-06 51.6 -1.4 32 298-329 365-397 (518)
62 KOG4265 Predicted E3 ubiquitin 86.8 0.34 7.4E-06 47.1 1.6 24 296-322 288-311 (349)
63 KOG1814 Predicted E3 ubiquitin 86.4 0.23 4.9E-06 49.2 0.2 32 297-328 183-214 (445)
64 KOG2034 Vacuolar sorting prote 86.4 0.2 4.3E-06 53.9 -0.3 32 297-329 816-847 (911)
65 COG5219 Uncharacterized conser 86.0 0.089 1.9E-06 56.7 -3.0 37 295-331 1466-1506(1525)
66 KOG0825 PHD Zn-finger protein 85.8 0.11 2.4E-06 55.0 -2.5 35 297-331 122-156 (1134)
67 KOG2164 Predicted E3 ubiquitin 85.1 0.27 5.8E-06 49.9 -0.1 30 298-330 186-215 (513)
68 KOG1428 Inhibitor of type V ad 83.6 0.44 9.5E-06 53.8 0.8 49 279-328 3468-3516(3738)
69 smart00249 PHD PHD zinc finger 82.7 0.84 1.8E-05 30.0 1.7 30 300-329 1-30 (47)
70 KOG2930 SCF ubiquitin ligase, 78.8 0.46 1E-05 38.3 -0.8 21 311-331 72-93 (114)
71 KOG0823 Predicted E3 ubiquitin 78.1 0.83 1.8E-05 42.0 0.5 33 296-331 45-77 (230)
72 COG5574 PEX10 RING-finger-cont 74.0 1.1 2.5E-05 41.9 0.3 30 298-330 215-244 (271)
73 PF00628 PHD: PHD-finger; Int 73.5 2.5 5.5E-05 28.9 1.9 30 300-329 1-30 (51)
74 KOG3970 Predicted E3 ubiquitin 71.4 1.7 3.7E-05 39.9 0.7 31 298-329 50-80 (299)
75 KOG1039 Predicted E3 ubiquitin 63.8 2.4 5.1E-05 41.6 0.1 34 297-330 160-198 (344)
76 cd03029 GRX_hybridPRX5 Glutare 61.8 13 0.00029 26.9 3.9 57 149-206 2-59 (72)
77 KOG2195 Transferrin receptor a 60.5 9 0.0002 41.1 3.7 36 147-182 184-219 (702)
78 KOG0827 Predicted E3 ubiquitin 60.3 0.68 1.5E-05 45.6 -4.2 32 298-329 196-228 (465)
79 TIGR02190 GlrX-dom Glutaredoxi 59.9 15 0.00032 27.5 3.9 60 146-206 6-66 (79)
80 KOG2066 Vacuolar assembly/sort 59.8 4.5 9.8E-05 43.3 1.3 29 300-328 786-818 (846)
81 COG5152 Uncharacterized conser 59.8 2.1 4.6E-05 38.6 -0.9 28 298-329 196-224 (259)
82 PF12906 RINGv: RING-variant d 59.5 3.4 7.4E-05 28.4 0.3 30 301-331 1-35 (47)
83 KOG1571 Predicted E3 ubiquitin 57.6 7.6 0.00016 38.0 2.4 24 296-322 303-326 (355)
84 PF11789 zf-Nse: Zinc-finger o 57.6 5.4 0.00012 28.7 1.0 31 297-329 10-40 (57)
85 PF06679 DUF1180: Protein of u 46.8 15 0.00033 32.2 2.3 21 240-260 98-118 (163)
86 PF13717 zinc_ribbon_4: zinc-r 43.7 11 0.00025 24.3 0.8 25 300-324 4-36 (36)
87 PF13832 zf-HC5HC2H_2: PHD-zin 40.3 16 0.00035 29.1 1.4 30 298-329 55-86 (110)
88 KOG1952 Transcription factor N 39.8 7.8 0.00017 42.0 -0.7 36 296-331 189-225 (950)
89 KOG2071 mRNA cleavage and poly 39.5 17 0.00038 37.9 1.8 32 296-328 511-553 (579)
90 KOG1829 Uncharacterized conser 39.4 6.9 0.00015 40.9 -1.1 31 298-328 511-546 (580)
91 PF14654 Epiglycanin_C: Mucin, 36.6 24 0.00052 28.3 1.7 34 225-258 10-43 (106)
92 smart00132 LIM Zinc-binding do 34.8 38 0.00083 20.9 2.3 27 301-328 2-28 (39)
93 cd03028 GRX_PICOT_like Glutare 34.0 94 0.002 23.8 4.8 68 148-216 8-85 (90)
94 PF07282 OrfB_Zn_ribbon: Putat 32.9 65 0.0014 23.3 3.6 30 297-326 27-59 (69)
95 KOG1940 Zn-finger protein [Gen 32.5 12 0.00025 35.6 -0.7 31 298-328 158-189 (276)
96 PRK10638 glutaredoxin 3; Provi 32.2 71 0.0015 23.8 3.8 67 149-216 3-74 (83)
97 KOG3858 Ephrin, ligand for Eph 31.9 25 0.00053 32.7 1.3 9 4-12 127-135 (233)
98 COG4847 Uncharacterized protei 31.8 21 0.00045 28.5 0.7 31 298-329 6-36 (103)
99 PF13901 DUF4206: Domain of un 31.4 30 0.00066 31.2 1.8 32 298-329 152-188 (202)
100 cd03027 GRX_DEP Glutaredoxin ( 31.3 82 0.0018 22.7 3.9 55 148-206 1-60 (73)
101 KOG2932 E3 ubiquitin ligase in 31.0 16 0.00036 35.2 0.0 29 299-329 91-119 (389)
102 PF13719 zinc_ribbon_5: zinc-r 30.3 28 0.00062 22.5 1.1 26 300-325 4-37 (37)
103 KOG2879 Predicted E3 ubiquitin 29.5 40 0.00087 32.0 2.3 33 295-329 236-268 (298)
104 PF01034 Syndecan: Syndecan do 29.1 23 0.0005 26.2 0.5 17 245-261 22-38 (64)
105 PRK11200 grxA glutaredoxin 1; 29.1 1.2E+02 0.0026 22.6 4.7 58 149-207 2-68 (85)
106 PF06024 DUF912: Nucleopolyhed 28.3 39 0.00085 27.0 1.8 16 236-251 67-82 (101)
107 PF04564 U-box: U-box domain; 28.0 19 0.0004 26.9 -0.1 30 297-329 3-32 (73)
108 PF10571 UPF0547: Uncharacteri 27.6 29 0.00062 20.9 0.7 23 300-324 2-25 (26)
109 PF04202 Mfp-3: Foot protein 3 27.3 32 0.0007 25.5 1.0 14 11-24 51-64 (71)
110 KOG0311 Predicted E3 ubiquitin 26.9 5.3 0.00011 39.1 -4.0 30 297-329 42-72 (381)
111 cd02066 GRX_family Glutaredoxi 26.7 94 0.002 21.3 3.5 56 150-205 2-58 (72)
112 PRK10824 glutaredoxin-4; Provi 26.5 74 0.0016 26.1 3.2 68 148-216 15-92 (115)
113 KOG2114 Vacuolar assembly/sort 26.4 18 0.0004 39.2 -0.5 26 299-328 841-868 (933)
114 PF02009 Rifin_STEVOR: Rifin/s 25.7 22 0.00048 34.2 -0.1 23 236-258 258-280 (299)
115 KOG4159 Predicted E3 ubiquitin 24.8 28 0.0006 34.9 0.4 30 296-328 82-111 (398)
116 PHA03096 p28-like protein; Pro 24.6 15 0.00033 35.1 -1.5 32 299-330 179-215 (284)
117 PF14610 DUF4448: Protein of u 23.9 1.4E+02 0.003 26.4 4.6 21 235-255 159-179 (189)
118 KOG1785 Tyrosine kinase negati 23.5 18 0.0004 36.1 -1.1 34 295-331 366-399 (563)
119 COG0695 GrxC Glutaredoxin and 23.3 1.8E+02 0.004 21.8 4.7 56 150-205 3-61 (80)
120 PF07010 Endomucin: Endomucin; 23.2 1.1E+02 0.0024 28.3 3.9 16 274-289 231-246 (259)
121 KOG0956 PHD finger protein AF1 23.1 30 0.00065 36.9 0.3 46 273-328 102-154 (900)
122 PF14914 LRRC37AB_C: LRRC37A/B 23.0 61 0.0013 28.0 2.1 27 226-252 113-139 (154)
123 PF01102 Glycophorin_A: Glycop 22.6 30 0.00064 28.9 0.1 9 250-258 82-90 (122)
124 PF12088 DUF3565: Protein of u 22.5 64 0.0014 23.5 1.8 17 309-325 7-23 (61)
125 PF01299 Lamp: Lysosome-associ 22.4 57 0.0012 31.2 2.0 21 240-260 278-298 (306)
126 COG5236 Uncharacterized conser 22.0 58 0.0013 32.0 2.0 50 276-329 40-89 (493)
127 cd03418 GRX_GRXb_1_3_like Glut 22.0 1.3E+02 0.0028 21.5 3.5 58 149-206 1-60 (75)
128 KOG2807 RNA polymerase II tran 21.9 58 0.0013 31.8 1.9 55 276-330 308-362 (378)
129 TIGR00365 monothiol glutaredox 21.3 1.3E+02 0.0027 23.6 3.5 68 148-216 12-89 (97)
130 TIGR02194 GlrX_NrdH Glutaredox 21.1 1.4E+02 0.003 21.5 3.5 54 151-205 2-56 (72)
131 KOG1812 Predicted E3 ubiquitin 20.8 23 0.00051 35.2 -1.0 31 298-328 146-177 (384)
132 TIGR02189 GlrX-like_plant Glut 20.8 1.7E+02 0.0036 23.0 4.1 69 148-216 8-83 (99)
133 KOG1512 PHD Zn-finger protein 20.5 48 0.001 31.7 1.1 51 273-329 295-345 (381)
134 KOG0978 E3 ubiquitin ligase in 20.5 16 0.00035 39.0 -2.3 25 300-328 645-670 (698)
135 TIGR01477 RIFIN variant surfac 20.4 46 0.00099 32.8 0.9 23 236-258 312-334 (353)
136 PF01680 SOR_SNZ: SOR/SNZ fami 20.0 39 0.00085 30.3 0.3 51 158-209 21-82 (208)
137 PTZ00046 rifin; Provisional 20.0 47 0.001 32.8 0.9 24 236-259 317-340 (358)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-47 Score=363.86 Aligned_cols=231 Identities=37% Similarity=0.628 Sum_probs=198.8
Q ss_pred cCCceeeccccCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEE
Q 020063 98 KPLSLHFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIV 177 (331)
Q Consensus 98 ~~~~~~f~~~~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV 177 (331)
++.+.+|.+.+|.||+++..++..|.++.++|.+||+|+.+.+...+....+++||+||+|+|++|+++||++|++|+||
T Consensus 30 ~n~S~sf~d~~a~f~~s~~~e~~~G~l~~~ep~~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIV 109 (348)
T KOG4628|consen 30 RNTSLSFADLPALFGPSLPSEGNLGVLVVAEPLNACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIV 109 (348)
T ss_pred ccccccccCCccccCCccccccceeeeecCCCccccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEE
Confidence 57888999999999999999999999999999999999998544333445899999999999999999999999999999
Q ss_pred eccCCCCcccccccCCCCceEEEEEEeccchHHHHHHhcCCcceEEEec-CCCCCccceeeehhhhHHHHHHHHHhhhhc
Q 020063 178 YNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHARGETGECCIFP-ESNRGSWSVLMVSVFSLIVVFALFAVAFIT 256 (331)
Q Consensus 178 ~n~~~~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~l~~~~v~v~I~p-~~~~~~w~~l~I~fi~llvi~~v~l~~~~~ 256 (331)
||+.+.+.++.|..+..++.|+++|++...|+.|+++.......+...+ +.....|.++.++++.++++..+++++|++
T Consensus 110 ynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~~~~~~~ws~~~~~~i~~l~v~~il~~~f~i 189 (348)
T KOG4628|consen 110 YNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPLGFDTSPWSILAISLISLLTVVAILVTCFFI 189 (348)
T ss_pred ecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeeccccccCCcchhhhhhhhhHHHHHHHHHHHHHH
Confidence 9998767788898889999999999999999999997765555555444 788889998888888888888888877777
Q ss_pred cCCCCCCCCCCCCcCCCCChhhhccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 257 PRPWRPWPGQNQPLSRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 257 ~r~~~~~~~~~~~~~~~l~~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+++++.++.+++++++++.++.++++|+.+|+..+++... ++||||||||++||+||+|||+|.||..|+=.
T Consensus 190 ~~~~~~~~~r~~~~~~r~~k~~l~~~p~~~f~~~~~~~~~--~~CaIClEdY~~GdklRiLPC~H~FH~~CIDp 261 (348)
T KOG4628|consen 190 YRIRRLIRARNRLRRNRLIKRLLKKLPVRTFTKGDDEDAT--DTCAICLEDYEKGDKLRILPCSHKFHVNCIDP 261 (348)
T ss_pred HHHHHHHHHHhHhhhhhhHHHHHhhCCcEEeccccccCCC--ceEEEeecccccCCeeeEecCCCchhhccchh
Confidence 7766555444433478899999999999999997665433 79999999999999999999999999999843
No 2
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=99.90 E-value=1.4e-23 Score=175.96 Aligned_cols=114 Identities=25% Similarity=0.445 Sum_probs=96.4
Q ss_pred cccCCCCCcCCCC-CeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCC
Q 020063 106 DLPAKFAVDVNSS-GTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKG 184 (331)
Q Consensus 106 ~~~A~FG~~~~~~-~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~ 184 (331)
..||+||.+++.. .+.|.|+.++|.++|++..++. ...++|+||+||+|+|.+|+++||++||+||||||+.+++
T Consensus 2 ~~pa~FG~~~~~~~~~~g~l~~~~p~~gC~~~~~~~----~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~ 77 (126)
T cd02126 2 AGPAQFGMDLTGDKAGVGRVVKAKPYRACSEITNAE----EVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGS 77 (126)
T ss_pred CCCcccCCcCCCCCCceEEEEeCCchhcccCCCCcc----ccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCc
Confidence 5789999999864 7899999999999999887642 2459999999999999999999999999999999987642
Q ss_pred -----cccccccCC---CCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 185 -----SLVSMTASH---EGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 185 -----~~~~m~~~~---~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
....|.++. +.+.||+++|++.+|+.|++.++ +.++++.
T Consensus 78 ~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~~~~~~~~ 125 (126)
T cd02126 78 SSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKEHQNVEVL 125 (126)
T ss_pred cccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHhCCceEEe
Confidence 345566654 46899999999999999999886 6677765
No 3
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=99.90 E-value=1.7e-23 Score=181.05 Aligned_cols=127 Identities=46% Similarity=0.700 Sum_probs=104.7
Q ss_pred eEEEEcC---CceeeccccCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHH
Q 020063 93 ATLVWKP---LSLHFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQA 169 (331)
Q Consensus 93 a~~v~~~---~~~~f~~~~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~ 169 (331)
++..+++ .+.+|...+|.||++.++.+++|.|+.++|.+||++.+.++.......++|+||+||+|+|.+|+++||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~A~FG~~~~~~~~~g~lv~~~p~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~ 89 (153)
T cd02123 10 ADKLALADSNLTDEFDDLPANFGPIPPGSGLKGVLVVAEPLNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQR 89 (153)
T ss_pred cceEEeecccccceEeeecccCCCCCCCCceEEEEEeCCccccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHH
Confidence 3444444 3367999999999999999999999999999999999874311122459999999999999999999999
Q ss_pred cCCcEEEEeccCCCCcccccccCCC---CceEEEEEEeccchHHHHHHhcCCcc
Q 020063 170 AGYRAAIVYNDREKGSLVSMTASHE---GVKVHAIFVSLETGVYLKEHARGETG 220 (331)
Q Consensus 170 aGA~avIV~n~~~~~~~~~m~~~~~---~i~IP~v~Is~~~G~~L~~~l~~~~v 220 (331)
+||++|||||+.+ +.+..|.++.. .++||+++|++++|+.|++.++..+.
T Consensus 90 aGA~avII~n~~~-~~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~ 142 (153)
T cd02123 90 AGYKAAIVYNDES-NDLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG 142 (153)
T ss_pred CCCCEEEEEECCC-CcceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence 9999999999876 35667776553 78999999999999999999975433
No 4
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=99.89 E-value=1.8e-22 Score=169.40 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=93.1
Q ss_pred CCCCcCCCCCeEEEEEeC-CCCCCCCCCCCCCCC---CCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCc
Q 020063 110 KFAVDVNSSGTCGALHVA-DPADACSPLSNPVAS---NDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (331)
Q Consensus 110 ~FG~~~~~~~~~G~L~~~-~P~~aC~~~~~~~~~---~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~ 185 (331)
+||.+++++.++|.|+++ +|.+||++++..... +....++||||+||+|+|.+|+++||++||++|||||+.++ .
T Consensus 1 ~FG~~~yg~~~~G~l~~~~~~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~-~ 79 (127)
T cd02125 1 NFGLPQYGGTLTGVVVYPKENRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDE-P 79 (127)
T ss_pred CCCCCCcCCeeEEEEEecCCccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCC-c
Confidence 599999999999999887 779999999774311 11245899999999999999999999999999999998763 4
Q ss_pred cccccc--------CCCCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 186 LVSMTA--------SHEGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 186 ~~~m~~--------~~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
+..|.. ..++++||+++|++.+|+.|++.++ |..|+++
T Consensus 80 ~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 80 LLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred cccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 555632 1246799999999999999999886 7777765
No 5
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=3.9e-22 Score=165.39 Aligned_cols=109 Identities=28% Similarity=0.297 Sum_probs=91.5
Q ss_pred CCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCC--Cccc
Q 020063 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREK--GSLV 187 (331)
Q Consensus 110 ~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~--~~~~ 187 (331)
.||.+++.+...|.|+.++|.+||++..++. ...++|+||+||+|+|.+|+++||++||+||||||+.++ ....
T Consensus 1 ~~~~~~~~~~~~~~lv~~~p~~gC~~~~~~~----~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~ 76 (118)
T cd02127 1 DFGTIFNTRYKHVPLVPADPLEACEELRNIH----DINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYV 76 (118)
T ss_pred CCCccccccccceEEEECCccccCCCCCCcc----ccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccce
Confidence 4899999999999999999999999866531 245999999999999999999999999999999998753 2334
Q ss_pred ccccC--CCCceEEEEEEeccchHHHHHHhc-CCcceE
Q 020063 188 SMTAS--HEGVKVHAIFVSLETGVYLKEHAR-GETGEC 222 (331)
Q Consensus 188 ~m~~~--~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v 222 (331)
.|.++ ..+++||+++|++++|+.|++.++ |..++.
T Consensus 77 ~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~~~~~ 114 (118)
T cd02127 77 EMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLGLPYA 114 (118)
T ss_pred EecCCCCCCCceEEEEEecHHHHHHHHHHHHcCCceEE
Confidence 56665 356899999999999999999887 665543
No 6
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=99.88 E-value=4.8e-22 Score=169.09 Aligned_cols=117 Identities=21% Similarity=0.305 Sum_probs=95.0
Q ss_pred cccCCCCCcCCCCCeEEEEEeC---CCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCC
Q 020063 106 DLPAKFAVDVNSSGTCGALHVA---DPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE 182 (331)
Q Consensus 106 ~~~A~FG~~~~~~~~~G~L~~~---~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~ 182 (331)
..+|+||...+..+++|.|+.. +|.+||+++++... .....++||||+||+|+|.+|+++||++||++|||||+.+
T Consensus 17 ~~~a~fg~~~~~~~~~G~l~~~~~~~~~~gC~~~~~~~~-~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~ 95 (138)
T cd02122 17 TESGRYGEHSPKEEAKGLVVVPDPPNDHYGCDPDTRFPI-PPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPG 95 (138)
T ss_pred ccccccCCCCCCCccEEEEecCCCCCCcCCCCCCccccC-CccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 3499999999999999998654 45899999986210 1124599999999999999999999999999999999986
Q ss_pred -CCcccccccCCCCceEEEEEEeccchHHHHHHhc-CCcceEEE
Q 020063 183 -KGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECCI 224 (331)
Q Consensus 183 -~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~I 224 (331)
......|..+. ...||+++|++.+|+.|++.++ |.+++++|
T Consensus 96 ~~~~~~~m~~~~-~~~ip~v~Is~~~G~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 96 TGNETVKMSHPG-TGDIVAIMITNPKGMEILELLERGISVTMVI 138 (138)
T ss_pred CCCceeeccCCC-CCcceEEEEcHHHHHHHHHHHHcCCcEEEeC
Confidence 33455665443 3488999999999999999886 77888764
No 7
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.88 E-value=4.6e-22 Score=169.52 Aligned_cols=117 Identities=24% Similarity=0.405 Sum_probs=98.5
Q ss_pred CCceeeccccCCCCCcCCC---CCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEE
Q 020063 99 PLSLHFPDLPAKFAVDVNS---SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAA 175 (331)
Q Consensus 99 ~~~~~f~~~~A~FG~~~~~---~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~av 175 (331)
+...+|.+.+|.||++++. .++.+.++.++|.+||++++++ ..++||||+||+|+|.+|++|||++||++|
T Consensus 14 ~~~~~~~~~~a~FG~~~p~~~~~~~~~~lv~~~~~~gC~~~~~~------~~g~IvLV~RG~C~F~~K~~nA~~aGA~av 87 (139)
T cd02132 14 DEGDELVGVTARFGASLPSKEDNANKTRAVLANPLDCCSPSTSK------LSGSIALVERGECAFTEKAKIAEAGGASAL 87 (139)
T ss_pred ccccEEEeeccccCCCCCCcccCccEEEEEECCcccccCCCCcc------cCCeEEEEECCCCCHHHHHHHHHHcCCcEE
Confidence 4666899999999988865 4688999999999999998642 359999999999999999999999999999
Q ss_pred EEeccCCCCcccccccCC----CCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 176 IVYNDREKGSLVSMTASH----EGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 176 IV~n~~~~~~~~~m~~~~----~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
||||+.+ ....|.... ..+.||+++|++.+|+.|++.++ |.+++++
T Consensus 88 Iv~n~~~--~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g~~Vtv~ 138 (139)
T cd02132 88 LIINDQE--ELYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQGKKVEVL 138 (139)
T ss_pred EEEECCC--cccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcCCcEEEe
Confidence 9999875 345564321 35799999999999999999886 7777765
No 8
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=99.84 E-value=1.9e-20 Score=155.02 Aligned_cols=104 Identities=29% Similarity=0.377 Sum_probs=84.7
Q ss_pred cccCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCc
Q 020063 106 DLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (331)
Q Consensus 106 ~~~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~ 185 (331)
...|.||+.+..+ +++... ++|.+||++.+.+ ...++||||+||+|+|.+|+++||++||++|||||+.++..
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~-~~p~~gC~~~~~~-----~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~ 77 (117)
T cd04813 5 GRYASFSPILNPH-LRGSYK-VSPTDACSLQEHA-----EIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRG 77 (117)
T ss_pred ccccccCCccCcc-cccccc-CCCCCCCCCCCcC-----CcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCccc
Confidence 4679999998876 333322 8999999988332 24699999999999999999999999999999999886544
Q ss_pred cccccc--CCCCceEEEEEEeccchHHHHHHhc
Q 020063 186 LVSMTA--SHEGVKVHAIFVSLETGVYLKEHAR 216 (331)
Q Consensus 186 ~~~m~~--~~~~i~IP~v~Is~~~G~~L~~~l~ 216 (331)
+..|.. +..+++||+++|++++|+.|++++.
T Consensus 78 ~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~ 110 (117)
T cd04813 78 LITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLP 110 (117)
T ss_pred ceecccCCCCCCcEEEEEEEcHHHHHHHHHhcc
Confidence 556663 3456899999999999999988875
No 9
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=99.81 E-value=3.4e-19 Score=147.34 Aligned_cols=113 Identities=28% Similarity=0.372 Sum_probs=95.7
Q ss_pred ccCCCCCcCCC---CCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCC
Q 020063 107 LPAKFAVDVNS---SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREK 183 (331)
Q Consensus 107 ~~A~FG~~~~~---~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~ 183 (331)
.+|+||+.++. ..+.|.|+.++|.++|++..... ...+||+|++||+|+|.+|+++|+++||+++||||+.+.
T Consensus 1 ~~a~fg~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~----~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~ 76 (118)
T cd04818 1 VSAGFGPALTNVTADVVLAGAAPASNTDGCTAFTNAA----AFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAG 76 (118)
T ss_pred CCcccCCcCccccccceeEEEecCCcccccCCCCcCC----CCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCC
Confidence 47999999885 56899999999999999887631 256999999999999999999999999999999998864
Q ss_pred CcccccccCCCCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 184 GSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 184 ~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
+....|.++.....||+++|+.++|+.|+++++ +.+++++
T Consensus 77 ~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v~ 117 (118)
T cd04818 77 GAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTVT 117 (118)
T ss_pred CcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 334556555556789999999999999999987 7777765
No 10
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.79 E-value=3.9e-19 Score=147.32 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=74.5
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCceEEE
Q 020063 121 CGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHA 200 (331)
Q Consensus 121 ~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~ 200 (331)
.=.|+.++|..||++.+.+. ....++|+||+||+|+|.+|+++||++||+||||||+.+........++...++||+
T Consensus 21 ~~~~~~~~~~~gC~~~~~~~---~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~ 97 (120)
T cd02129 21 LLPLRNLTSSVLCSASDVPP---GGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPV 97 (120)
T ss_pred ceeeecCCCcCCCCccccCc---cccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccE
Confidence 33788899999999887542 123599999999999999999999999999999999875211111122336789999
Q ss_pred EEEeccchHHHHHHhc
Q 020063 201 IFVSLETGVYLKEHAR 216 (331)
Q Consensus 201 v~Is~~~G~~L~~~l~ 216 (331)
+||++++|+.|++.+.
T Consensus 98 v~Is~~dG~~i~~~l~ 113 (120)
T cd02129 98 ALLSYKDMLDIQQTFG 113 (120)
T ss_pred EEEeHHHHHHHHHHhc
Confidence 9999999999988886
No 11
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.78 E-value=2.8e-18 Score=142.86 Aligned_cols=113 Identities=26% Similarity=0.321 Sum_probs=89.8
Q ss_pred cCCCCCcCCCCCeEEEEEeCCC--CCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCc
Q 020063 108 PAKFAVDVNSSGTCGALHVADP--ADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (331)
Q Consensus 108 ~A~FG~~~~~~~~~G~L~~~~P--~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~ 185 (331)
...|++..+..+++|.|++.++ .++|++.+.+. ....+|||||+||+|+|.+|+++||++||+++||||+.+...
T Consensus 5 ~~~~~~~~~~~gi~~~lv~~~~~~~~gC~~~~~~~---~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~ 81 (122)
T cd04816 5 SLSYSPSTPPGGVTAPLVPLDPERPAGCDASDYDG---LDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGG 81 (122)
T ss_pred EEeccCCCCCCCcEEEEEEcCCCCccCCCccccCC---CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCcc
Confidence 3567888888999999999876 48999875532 124699999999999999999999999999999999876322
Q ss_pred ccccccC-CCCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 186 LVSMTAS-HEGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 186 ~~~m~~~-~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
...+..+ .....||+++|++++|+.|+++++ +.+++++
T Consensus 82 ~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g~~v~~~ 121 (122)
T cd04816 82 TAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAGETLELD 121 (122)
T ss_pred ccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCCCEEEEe
Confidence 2222222 256789999999999999999987 6667654
No 12
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=99.75 E-value=1.7e-17 Score=138.12 Aligned_cols=113 Identities=29% Similarity=0.373 Sum_probs=84.8
Q ss_pred eeccccCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCC
Q 020063 103 HFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE 182 (331)
Q Consensus 103 ~f~~~~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~ 182 (331)
+|...+..|. +..+.+|.|+... .++|++.+.+. ...++||||+||+|+|.+|+++|+++||++|||||+.+
T Consensus 8 ~~~~~~~~~~---~~~~~~g~lv~~~-~~gC~~~~~~~----~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~ 79 (122)
T cd02130 8 AIPTTAFTYS---PAGEVTGPLVVVP-NLGCDAADYPA----SVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVP 79 (122)
T ss_pred EEeeeecccC---CCCCcEEEEEEeC-CCCCCcccCCc----CCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCC
Confidence 3444444442 2245689998864 58999865531 24699999999999999999999999999999999873
Q ss_pred CCcccccccCCCCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 183 KGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 183 ~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
.+....+..+.++..||+++|++++|+.|++.++ |.++++.
T Consensus 80 ~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~g~~v~~~ 121 (122)
T cd02130 80 AGGLSGTLGEPSGPYVPTVGISQEDGKALVAALANGGEVSAN 121 (122)
T ss_pred CcccccccCCCCCCEeeEEEecHHHHHHHHHHHhcCCcEEEe
Confidence 2223223334456789999999999999999886 7777765
No 13
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.67 E-value=9.6e-16 Score=130.34 Aligned_cols=99 Identities=22% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCC-----HHHHHHHHHHcCCcEEEEeccCCC-C
Q 020063 111 FAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI-----FEDKIRNAQAAGYRAAIVYNDREK-G 184 (331)
Q Consensus 111 FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~Cs-----F~~Kv~~Aq~aGA~avIV~n~~~~-~ 184 (331)
|-...+...++|.|+.... -+|+-... ...+||+||+||+|+ |.+|+++||++||+||||||+.+. +
T Consensus 27 ~~s~~~~g~~tg~lv~~g~-~g~d~~~~------d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g 99 (139)
T cd04817 27 YASMPVTGSATGSLYYCGT-SGGSYICG------GMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAG 99 (139)
T ss_pred ccccccCCcceEEEEEccC-CCccccCC------CcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCC
Confidence 4334455678899888775 33732211 235999999999999 999999999999999999999832 2
Q ss_pred cccccccCC-CCceEEEEEEeccchHHHHHHhc
Q 020063 185 SLVSMTASH-EGVKVHAIFVSLETGVYLKEHAR 216 (331)
Q Consensus 185 ~~~~m~~~~-~~i~IP~v~Is~~~G~~L~~~l~ 216 (331)
....+..+. .+++||+++|++++|+.|++.+.
T Consensus 100 ~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~ 132 (139)
T cd04817 100 LQNPFLVDTNNDTTIPSVSVDRADGQALLAALG 132 (139)
T ss_pred cccccccCCCCCceEeEEEeeHHHHHHHHHHhc
Confidence 233344443 37899999999999999999885
No 14
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=99.62 E-value=3.2e-15 Score=125.84 Aligned_cols=94 Identities=26% Similarity=0.360 Sum_probs=71.0
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCceEEEEE
Q 020063 123 ALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIF 202 (331)
Q Consensus 123 ~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~ 202 (331)
.+..+++.+||++++.+.. ...++||||+||+|+|.+|++|||++||++|||||+.++ .. .+.... ...+|+++
T Consensus 34 ~~~~~~~~~gC~~~~~~~~---~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~-~~-~~~~~~-~~~~~~~~ 107 (129)
T cd02124 34 SLDTSVADDACQPLPDDTP---DLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSG-PT-DQVGSD-ADSIIAAV 107 (129)
T ss_pred ecccCCCcccCcCCCcccc---cccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCC-cc-cccCCC-CcceeeEE
Confidence 4455678899999866431 235999999999999999999999999999999998753 22 233222 23456666
Q ss_pred EeccchHHHHHHhc-CCcceEE
Q 020063 203 VSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 203 Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
+ +++|+.|++.++ |.++++.
T Consensus 108 ~-~~~G~~l~~~l~~G~~vtv~ 128 (129)
T cd02124 108 T-PEDGEAWIDALAAGSNVTVD 128 (129)
T ss_pred e-HHHHHHHHHHHhcCCeEEEe
Confidence 6 999999998886 6677654
No 15
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.57 E-value=1.8e-15 Score=128.42 Aligned_cols=116 Identities=28% Similarity=0.428 Sum_probs=91.4
Q ss_pred EcC--CceeeccccCC-CCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCc
Q 020063 97 WKP--LSLHFPDLPAK-FAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYR 173 (331)
Q Consensus 97 ~~~--~~~~f~~~~A~-FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~ 173 (331)
+.| ...+|...||+ ||..++..-..-.|+.+||..||+.+.+... ..+.|+|++||+|||..|.+++|++||.
T Consensus 38 lsP~~l~Yty~~~pAkdfG~~F~~r~e~~~lV~adPp~aC~elrN~~f----~~d~vaL~eRGeCSFl~Ktl~~e~aGa~ 113 (193)
T KOG3920|consen 38 LSPYTLAYTYQMKPAKDFGVHFPDRFENLELVLADPPHACEELRNEIF----APDSVALMERGECSFLVKTLNGEKAGAT 113 (193)
T ss_pred cCcccEEEEEEecchhhhccccchhhcCcceeecCChhHHHHHhhccc----CCCcEEEEecCCceeeehhhhhhhcCce
Confidence 455 55588999998 9988775422237999999999999988632 2378999999999999999999999999
Q ss_pred EEEEeccCCCCc----ccccccCC--CCceEEEEEEeccchHHHHHHhc
Q 020063 174 AAIVYNDREKGS----LVSMTASH--EGVKVHAIFVSLETGVYLKEHAR 216 (331)
Q Consensus 174 avIV~n~~~~~~----~~~m~~~~--~~i~IP~v~Is~~~G~~L~~~l~ 216 (331)
++||.|+.+.+. .+.|-.|. ++-+||++|+-..+|-.++.-++
T Consensus 114 aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~ 162 (193)
T KOG3920|consen 114 AIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK 162 (193)
T ss_pred EEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence 999998875433 34566554 55799999999999977655543
No 16
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=99.57 E-value=2.2e-15 Score=120.05 Aligned_cols=94 Identities=29% Similarity=0.473 Sum_probs=65.3
Q ss_pred CeEEEEEeCCCC---CCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCC
Q 020063 119 GTCGALHVADPA---DACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEG 195 (331)
Q Consensus 119 ~~~G~L~~~~P~---~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~ 195 (331)
..+|.|+.+.+. ..|.+...+ .....++|||++||+|+|.+|+++||++||+|+||+|+.+.........+...
T Consensus 5 ~~~~~lV~~~~~~~~~~~~~~~~~---~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~ 81 (101)
T PF02225_consen 5 TVTGPLVPAGNGIDEGDCCPSDYN---GSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDP 81 (101)
T ss_dssp EEEEEEEEETTEEECCHHHHHHTS---TSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTS
T ss_pred CEEEEEEEecCCCCcccccccccC---CccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCC
Confidence 456788743332 333333222 12356999999999999999999999999999999993322222223334566
Q ss_pred ceEEEEEEeccchHHHHHHh
Q 020063 196 VKVHAIFVSLETGVYLKEHA 215 (331)
Q Consensus 196 i~IP~v~Is~~~G~~L~~~l 215 (331)
..||+++|++++|+.|++++
T Consensus 82 ~~iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 82 IDIPVVFISYEDGEALLAYI 101 (101)
T ss_dssp TBSEEEEE-HHHHHHHHHHH
T ss_pred cEEEEEEeCHHHHhhhhccC
Confidence 89999999999999998864
No 17
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=99.54 E-value=2.4e-14 Score=140.23 Aligned_cols=142 Identities=25% Similarity=0.385 Sum_probs=104.1
Q ss_pred CceeeccccCCCCCcCCCCCeE---EEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEE
Q 020063 100 LSLHFPDLPAKFAVDVNSSGTC---GALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAI 176 (331)
Q Consensus 100 ~~~~f~~~~A~FG~~~~~~~~~---G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avI 176 (331)
...++....++||..+++..-. -.+..++|.|.|++...+ ..+++++|.||+|+|.+|+++||++||+|++
T Consensus 51 ~~~~~a~~~~~~~~t~~~~~~~a~~~~~a~~~pld~cs~~~~k------l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLl 124 (541)
T KOG2442|consen 51 EYLEFAGMLARFGITLPSKCKAADIPHLAQVDPLDSCSTLQSK------LSGKVALVFRGNCSFTEKAKLAQAAGASALL 124 (541)
T ss_pred chhhhhhhhhhcCCcCCCCccccccchhhhcCCccccCCCCcc------ccceeEEEecccceeehhhhhhhhcCceEEE
Confidence 4446778889999776544322 234567999999988765 3489999999999999999999999999999
Q ss_pred EeccCCCCcccccccC----CCCceEEEEEEeccchHHHHHHhc-CCcceEEEecCCCCCccceeeehhhhHHHHHHHHH
Q 020063 177 VYNDREKGSLVSMTAS----HEGVKVHAIFVSLETGVYLKEHAR-GETGECCIFPESNRGSWSVLMVSVFSLIVVFALFA 251 (331)
Q Consensus 177 V~n~~~~~~~~~m~~~----~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~I~p~~~~~~w~~l~I~fi~llvi~~v~l 251 (331)
|.|+.. ++..|..+ ..+++||++||+.++|+.+.+... +.+|++.++.|..+.. -+...||-++.+-++..
T Consensus 125 iin~~~--d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~~lYaPk~P~v--D~~~v~iwlmAVgTVa~ 200 (541)
T KOG2442|consen 125 IINNKK--DLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVELALYAPKRPAV--DYAMVFIWLMAVGTVAC 200 (541)
T ss_pred EEcCch--hhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEEEEECCCCCCc--cHHHHHHHHHHHhHhhc
Confidence 999975 33333332 257899999999999988876654 7789999987765432 13334444444444444
No 18
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=99.46 E-value=2.9e-13 Score=111.86 Aligned_cols=97 Identities=28% Similarity=0.358 Sum_probs=73.0
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccC---CCCceEEEE
Q 020063 125 HVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTAS---HEGVKVHAI 201 (331)
Q Consensus 125 ~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~---~~~i~IP~v 201 (331)
....|.++|++...+. ......++|||++||+|+|.+|+++||++||+|+||+|+.+.. ...+... .....||++
T Consensus 25 ~~~~~~~~C~~~~~~~-~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~-~~~~~~~~~~~~~~~iP~~ 102 (126)
T cd00538 25 VVAGPLVGCGYGTTDD-SGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDP-GPQMGSVGLESTDPSIPTV 102 (126)
T ss_pred ccccceEEEecCcccc-cCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCc-ccccccccCCCCCCcEeEE
Confidence 4556778998876211 0122459999999999999999999999999999999987532 2222221 245689999
Q ss_pred EEeccchHHHHHHhc-CCcceEE
Q 020063 202 FVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 202 ~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
+|+.++|+.|+++++ +.++++.
T Consensus 103 ~is~~~g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 103 GISYADGEALLSLLEAGKTVTVD 125 (126)
T ss_pred EeCHHHHHHHHHHHhcCCceEEe
Confidence 999999999999986 6666654
No 19
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.36 E-value=1.1e-11 Score=105.83 Aligned_cols=105 Identities=28% Similarity=0.295 Sum_probs=75.3
Q ss_pred CCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccc
Q 020063 109 AKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVS 188 (331)
Q Consensus 109 A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~ 188 (331)
..++-+.+..+.++.++.... |.+-+.. .....++|||++||+|+|.+|+++|+++||+++||||+.++ ...
T Consensus 15 ~~~~~~~~~~~~~~~lv~~g~---g~~~d~~---~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~--~~~ 86 (143)
T cd02133 15 AFSGNPTDLLGKTYELVDAGL---GTPEDFE---GKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDG--LIP 86 (143)
T ss_pred ccCCCcCCCCCcEEEEEEccC---CchhccC---CCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCC--ccc
Confidence 445555555677888887632 2222111 11245999999999999999999999999999999998753 223
Q ss_pred cccCCCCceEEEEEEeccchHHHHHHhcCCcceEE
Q 020063 189 MTASHEGVKVHAIFVSLETGVYLKEHARGETGECC 223 (331)
Q Consensus 189 m~~~~~~i~IP~v~Is~~~G~~L~~~l~~~~v~v~ 223 (331)
+..+. ...||+++|++.+|+.|+++++. .+++.
T Consensus 87 ~~~~~-~~~iP~v~Is~~dG~~L~~~l~~-~~~i~ 119 (143)
T cd02133 87 GTLGE-AVFIPVVFISKEDGEALKAALES-SKKLT 119 (143)
T ss_pred ccCCC-CCeEeEEEecHHHHHHHHHHHhC-CCeEE
Confidence 32222 35799999999999999999875 44444
No 20
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=99.20 E-value=1.4e-10 Score=97.26 Aligned_cols=100 Identities=21% Similarity=0.041 Sum_probs=71.2
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCC--CHHHHHHHHHHcCCcEEEEeccCCCCcccccc-cC-
Q 020063 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQC--IFEDKIRNAQAAGYRAAIVYNDREKGSLVSMT-AS- 192 (331)
Q Consensus 117 ~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~C--sF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~-~~- 192 (331)
...++|.++.... + .+.+.. .....++||||+||.| +|.+|+++|+++||+|+||+|+.++....... +.
T Consensus 20 ~~~~~~~lV~~g~--G-~~~d~~---~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~ 93 (127)
T cd04819 20 SGEAKGEPVDAGY--G-LPKDFD---GLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTE 93 (127)
T ss_pred CCCeeEEEEEeCC--C-CHHHcC---CCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccccccc
Confidence 3457888888652 2 111111 1124699999999999 99999999999999999999877542221111 11
Q ss_pred -CCCceEEEEEEeccchHHHHHHhc-CCcceE
Q 020063 193 -HEGVKVHAIFVSLETGVYLKEHAR-GETGEC 222 (331)
Q Consensus 193 -~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v 222 (331)
.....||++.|+.+||+.|.++++ |..+.+
T Consensus 94 ~~~~~~IP~v~Is~edg~~L~~~l~~g~~~~~ 125 (127)
T cd04819 94 DGPPSPIPAASVSGEDGLRLARVAERNDTLVL 125 (127)
T ss_pred CCCCCCCCEEEEeHHHHHHHHHHHhcCCceEe
Confidence 234689999999999999999987 555543
No 21
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.2e-13 Score=123.18 Aligned_cols=35 Identities=29% Similarity=0.656 Sum_probs=31.7
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
..+-+||||+++|-++|++++|||+|.||..|+=.
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~k 355 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDK 355 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHH
Confidence 34579999999999999999999999999999854
No 22
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=99.14 E-value=1e-10 Score=99.05 Aligned_cols=109 Identities=17% Similarity=0.101 Sum_probs=77.6
Q ss_pred CCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCC------CHHHH-------HHHHHHcCCcEEE
Q 020063 110 KFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQC------IFEDK-------IRNAQAAGYRAAI 176 (331)
Q Consensus 110 ~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~C------sF~~K-------v~~Aq~aGA~avI 176 (331)
.|.+..+..+++|.++.....+ .+..-+ .....+|||||+|+.| +|..| .++|+++||.|+|
T Consensus 7 ~~s~~t~~~gvta~vv~v~~~~---~~~~~~--~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avI 81 (134)
T cd04815 7 GGSVATPPEGITAEVVVVKSFD---ELKAAP--AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVL 81 (134)
T ss_pred CCCCCCCCCCcEEEEEEECCHH---HHHhcc--hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEE
Confidence 3455566677999998765321 111100 1124699999999999 99999 7999999999999
Q ss_pred EeccCCCCc--c-cccccC-CCCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 177 VYNDREKGS--L-VSMTAS-HEGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 177 V~n~~~~~~--~-~~m~~~-~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
++|+.+... . ..+... .....||++.|+.+||+.|..+++ |..+++.
T Consensus 82 v~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 82 IRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDADMLERLAARGKPIRVN 133 (134)
T ss_pred EEecCcccCCCCcCCccccCCCCCCCCEEEechhcHHHHHHHHhCCCCeEEe
Confidence 999753211 1 222232 334679999999999999999987 6677665
No 23
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.01 E-value=1.4e-09 Score=90.27 Aligned_cols=82 Identities=26% Similarity=0.233 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCeEEEEEcCCC-CHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCceEEEEEEeccc
Q 020063 129 PADACSPLSNPVASNDADHINFVLIVRGQC-IFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLET 207 (331)
Q Consensus 129 P~~aC~~~~~~~~~~~~~~~~IvLV~RG~C-sF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~Is~~~ 207 (331)
....|++..... ....+||||++||.| +|.+|+.+|+++||.|+|++|+.++. ..+.. ....||+++|+.++
T Consensus 36 ~~~~C~~~~~~~---~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~--~~~~~--~~~~iP~v~I~~~~ 108 (126)
T cd02120 36 DASLCLPGSLDP---SKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDG--LDVVA--DAHVLPAVHVDYED 108 (126)
T ss_pred ccccCCCCCCCh---hhccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCC--ceecc--cccccceEEECHHH
Confidence 347898765432 235699999999999 99999999999999999999987532 22221 23579999999999
Q ss_pred hHHHHHHhcC
Q 020063 208 GVYLKEHARG 217 (331)
Q Consensus 208 G~~L~~~l~~ 217 (331)
|+.|+++++.
T Consensus 109 g~~l~~y~~~ 118 (126)
T cd02120 109 GTAILSYINS 118 (126)
T ss_pred HHHHHHHHHc
Confidence 9999999873
No 24
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=98.96 E-value=1.3e-09 Score=96.60 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=77.3
Q ss_pred eeccccCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCC--CCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEecc
Q 020063 103 HFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPV--ASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYND 180 (331)
Q Consensus 103 ~f~~~~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~--~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~ 180 (331)
++...+..|-+..+...++|.++.++ .| .+.+... ..+....++||||+||+|+|.+|+++||++||+|||||+|
T Consensus 12 ~~~l~~~~f~~~s~~G~v~g~lVyvn--~G-~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~D 88 (183)
T cd02128 12 ELVENPGGYVAYSAAGTVTGKLVYAN--YG-RKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPD 88 (183)
T ss_pred ceecccccccCCCCCCceEEEEEEcC--CC-CHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecC
Confidence 45555556665556667899999884 33 2211110 0012346999999999999999999999999999999998
Q ss_pred CCCCcc-----------cccccCC-------------------CCceEEEEEEeccchHHHHHHhcCCc
Q 020063 181 REKGSL-----------VSMTASH-------------------EGVKVHAIFVSLETGVYLKEHARGET 219 (331)
Q Consensus 181 ~~~~~~-----------~~m~~~~-------------------~~i~IP~v~Is~~~G~~L~~~l~~~~ 219 (331)
..+... ....+|+ .--.||++-||..+++.|.+.++|..
T Consensus 89 p~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~~ 157 (183)
T cd02128 89 PADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGPV 157 (183)
T ss_pred HHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCCC
Confidence 521000 0001110 11379999999999999999988764
No 25
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.79 E-value=6.9e-10 Score=75.87 Aligned_cols=32 Identities=38% Similarity=0.731 Sum_probs=29.4
Q ss_pred ccccccccccCCCceEEEecCCCccCcccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
++|+||+++|.+++.+..|||+|.||.+||..
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~ 32 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKE 32 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHH
Confidence 47999999999999999999999999999864
No 26
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.30 E-value=1.5e-07 Score=86.84 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=43.6
Q ss_pred CCCCChhhhccCCeEEEccCCCCCCCCCccccccccccCCCc----eEEEec-CCCccCccccccC
Q 020063 271 SRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGE----KLKVLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 271 ~~~l~~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd----~vRvLP-C~H~FH~~Cl~~~ 331 (331)
+++..++.++.+|.+..+-.+......+.+|+||+|++.+.+ .+.+++ |+|.||..||..|
T Consensus 147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~W 212 (238)
T PHA02929 147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIW 212 (238)
T ss_pred hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHH
Confidence 345577889999998655322222345689999999988765 244565 9999999999643
No 27
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=98.29 E-value=1.9e-06 Score=78.85 Aligned_cols=107 Identities=21% Similarity=0.153 Sum_probs=70.6
Q ss_pred cCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCC--CCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCc
Q 020063 108 PAKFAVDVNSSGTCGALHVADPADACSPLSNPV--ASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGS 185 (331)
Q Consensus 108 ~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~--~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~ 185 (331)
++-++.+.. ..++|.|+.+. .|...+... ..+....++|||+++|.|.+.+|+++|+++||+|||||++..+..
T Consensus 34 ~~f~a~s~s-g~v~g~lVyvn---yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d~~ 109 (220)
T cd02121 34 PPFHAYSAS-GNVTAELVYAN---YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPADDG 109 (220)
T ss_pred ccceecCCC-CCceEEEEEcC---CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchhcc
Confidence 333333333 34789999876 333322110 011234699999999999999999999999999999999753210
Q ss_pred --------------------c----cc----cccCC--------------------CCceEEEEEEeccchHHHHHHhcC
Q 020063 186 --------------------L----VS----MTASH--------------------EGVKVHAIFVSLETGVYLKEHARG 217 (331)
Q Consensus 186 --------------------~----~~----m~~~~--------------------~~i~IP~v~Is~~~G~~L~~~l~~ 217 (331)
. +. ..+|+ .-..||++=|+..|++.|.+.++|
T Consensus 110 ~~~~~~~~~yP~g~~~~~~~vqRgsv~~~~~~~GDplTPG~ps~~~~~r~~~~~~~~lP~IPs~PIS~~da~~lL~~L~g 189 (220)
T cd02121 110 YITGENGKTYPDGPARPPSGVQRGSVLFMSIGPGDPLTPGYPSKPGAERRDKEESKGLPKIPSLPISYRDAQPLLKALGG 189 (220)
T ss_pred cccccccccCCCCCCCCCCcceecceeccccCCCCCCCCCCCCCCCCcccCcccccCCCCCCcccCCHHHHHHHHHHcCC
Confidence 0 00 00111 013699999999999999998876
Q ss_pred C
Q 020063 218 E 218 (331)
Q Consensus 218 ~ 218 (331)
.
T Consensus 190 ~ 190 (220)
T cd02121 190 P 190 (220)
T ss_pred C
Confidence 5
No 28
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.25 E-value=8.9e-06 Score=70.31 Aligned_cols=93 Identities=17% Similarity=0.030 Sum_probs=60.6
Q ss_pred CCeEEEEEeCC---CCCCCCCCCCCCCCCCCCCCeEEEEEcCC------------------CCHHHHHHHHHHcCCcEEE
Q 020063 118 SGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQ------------------CIFEDKIRNAQAAGYRAAI 176 (331)
Q Consensus 118 ~~~~G~L~~~~---P~~aC~~~~~~~~~~~~~~~~IvLV~RG~------------------CsF~~Kv~~Aq~aGA~avI 176 (331)
..++|.|+.+. ..++|...+.. +...++|||||.||+ |+|..|+++|+++||+|||
T Consensus 18 g~vtg~lVfvGyGi~~~~~~~~Dy~---giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVI 94 (151)
T cd04822 18 GAVTAPVVFAGYGITAPELGYDDYA---GLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVI 94 (151)
T ss_pred CCceEeEEEecCCcCccccchhhcc---CCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEE
Confidence 45788888764 33567644432 123569999999884 9999999999999999999
Q ss_pred EeccCCCCcccccccCCCCceEEEEEEeccchHHHHHH
Q 020063 177 VYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEH 214 (331)
Q Consensus 177 V~n~~~~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~ 214 (331)
|||+.+......-.....+.. .+++++....+.+...
T Consensus 95 v~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 95 VVNGPNSHSGDADRLPRFGGT-APQRVDIAAADPWFTA 131 (151)
T ss_pred EEeCCcccCcccccccccCcc-ceEEechHHHHHHhhh
Confidence 999875321100000000111 1677777777666554
No 29
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=98.06 E-value=1.8e-05 Score=67.26 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCCeEEEEEeCC---CCCCCCCCCCCCCCCCCCCCeEEEEEcCCCC------------HHHHHHHHHHcCCcEEEEeccC
Q 020063 117 SSGTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQCI------------FEDKIRNAQAAGYRAAIVYNDR 181 (331)
Q Consensus 117 ~~~~~G~L~~~~---P~~aC~~~~~~~~~~~~~~~~IvLV~RG~Cs------------F~~Kv~~Aq~aGA~avIV~n~~ 181 (331)
...++|.|+.+. ..++|...+.. ....++|||||++|.|+ +.+|+++|+++||+|||++++.
T Consensus 19 ~g~v~gelVfvGyG~~~~~~~~~Dy~---~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~ 95 (137)
T cd04820 19 AASVEAPLVFVGYGLVAPELGHDDYA---GLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTP 95 (137)
T ss_pred CCCceEeEEEecCCcCccCcCHhhcc---CCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCC
Confidence 346788888764 33566644332 12356999999999995 8899999999999999999987
Q ss_pred C
Q 020063 182 E 182 (331)
Q Consensus 182 ~ 182 (331)
.
T Consensus 96 ~ 96 (137)
T cd04820 96 R 96 (137)
T ss_pred c
Confidence 5
No 30
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.06 E-value=1.1e-06 Score=66.68 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=25.9
Q ss_pred CccccccccccCC----------CceEEEecCCCccCccccccC
Q 020063 298 GETCAICLEDYQD----------GEKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 298 ~~~CaICLedf~~----------gd~vRvLPC~H~FH~~Cl~~~ 331 (331)
++.|+||+++|.+ +-.+...+|+|.||..||..|
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~W 62 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQW 62 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHH
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHH
Confidence 4569999999933 235666779999999999754
No 31
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=98.00 E-value=2.7e-05 Score=66.64 Aligned_cols=61 Identities=13% Similarity=0.028 Sum_probs=46.4
Q ss_pred CeEEEEEeCC---CCCCCCCCCCCCCCCCCCCCeEEEEEcCCC------------------CHHHHHHHHHHcCCcEEEE
Q 020063 119 GTCGALHVAD---PADACSPLSNPVASNDADHINFVLIVRGQC------------------IFEDKIRNAQAAGYRAAIV 177 (331)
Q Consensus 119 ~~~G~L~~~~---P~~aC~~~~~~~~~~~~~~~~IvLV~RG~C------------------sF~~Kv~~Aq~aGA~avIV 177 (331)
.+++.|+.+. ...+|...+.. +...++|||||.||+| +|..|+++|+++||+|||+
T Consensus 19 ~~~aelVfvGyGi~a~~~~~dDYa---g~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIi 95 (142)
T cd04814 19 IKDAPLVFVGYGIKAPELSWDDYA---GLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLI 95 (142)
T ss_pred ccceeeEEecCCcCCCCCChhhcC---CCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEE
Confidence 4567777653 23456644432 1234699999999999 6999999999999999999
Q ss_pred eccCC
Q 020063 178 YNDRE 182 (331)
Q Consensus 178 ~n~~~ 182 (331)
+|+.+
T Consensus 96 i~~~~ 100 (142)
T cd04814 96 VHELA 100 (142)
T ss_pred EeCCC
Confidence 99875
No 32
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=97.64 E-value=7.3e-05 Score=64.33 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=45.0
Q ss_pred CCeEEEEEeCCCC---CCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCC
Q 020063 118 SGTCGALHVADPA---DACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE 182 (331)
Q Consensus 118 ~~~~G~L~~~~P~---~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~ 182 (331)
..++|.+++++=. |- +.+.+ +-+.+++|||++-|.-....|+++||++||.|||||.|..
T Consensus 13 G~Vtg~~VYvNyG~~eDf-~~L~~----~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 13 GTLQAEVVDVQYGSVEDL-RRIRD----NMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CceEEEEEEecCCCHHHH-HHHHh----CCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 3579999987621 10 00111 1235699999999999999999999999999999999864
No 33
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.50 E-value=3.3e-05 Score=51.34 Aligned_cols=28 Identities=32% Similarity=0.644 Sum_probs=23.7
Q ss_pred cccccccccCCCceEEEecCCCccCccccc
Q 020063 300 TCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+|+||++++ .+.+..+||+|.||..|+-
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~ 28 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCID 28 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHH
Confidence 599999998 5566777799999999984
No 34
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=4.7e-05 Score=65.62 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=27.2
Q ss_pred CCccccccccccCCCceEEEecCCCccCc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFL 325 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~ 325 (331)
+-.+|.|||||++.||+|-.|||-.+||+
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 45799999999999999999999999997
No 35
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=4.1e-05 Score=73.79 Aligned_cols=53 Identities=21% Similarity=0.368 Sum_probs=37.3
Q ss_pred CChhhhccCCeEEEccCCCCCCCCCccccccccc-cCCC--------c-eEEEecCCCccCcccccc
Q 020063 274 LDSKVVEALPCFLFSSASSSQCHGGETCAICLED-YQDG--------E-KLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 274 l~~~~i~~LP~~~y~~~~~~~~~~~~~CaICLed-f~~g--------d-~vRvLPC~H~FH~~Cl~~ 330 (331)
+.++.-+.+|+.+-.+- .++...|+||.|| |..+ | +=+.|||||.||-+||=.
T Consensus 267 ~~kdl~~~~~t~t~eql----~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLkn 329 (491)
T COG5243 267 ATKDLNAMYPTATEEQL----TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKN 329 (491)
T ss_pred HhhHHHhhcchhhhhhh----cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHH
Confidence 34445556676554332 3456799999999 6665 1 347899999999999854
No 36
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.24 E-value=0.0001 Score=48.85 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=23.6
Q ss_pred ccccccccCCCceEEEecCCCccCcccccc
Q 020063 301 CAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 301 CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
|.||++++.+ .+.+++|+|.|+.+|+..
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~ 28 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEK 28 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHH
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHH
Confidence 8999999887 667899999999999853
No 37
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.23 E-value=7.3e-05 Score=49.81 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=24.4
Q ss_pred ccccccccCCCceEEEecCCCccCcccccc
Q 020063 301 CAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 301 CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
|+||++.+++.. +.++|+|.|+..||..
T Consensus 1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~ 28 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLPCGHSFCRDCLRK 28 (41)
T ss_dssp ETTTSSBCSSEE--EETTTSEEEEHHHHHH
T ss_pred CCcCCccccCCC--EEecCCCcchHHHHHH
Confidence 899999987765 7899999999999853
No 38
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.16 E-value=0.00012 Score=46.85 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.7
Q ss_pred ccccccccCCCceEEEecCCCccCccccc
Q 020063 301 CAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 301 CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
|+||++. .+....+||+|.||..|+.
T Consensus 1 C~iC~~~---~~~~~~~~C~H~~c~~C~~ 26 (39)
T smart00184 1 CPICLEE---LKDPVVLPCGHTFCRSCIR 26 (39)
T ss_pred CCcCccC---CCCcEEecCCChHHHHHHH
Confidence 8899998 4568899999999999985
No 39
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.14 E-value=0.00015 Score=49.42 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=26.9
Q ss_pred cccccccccCCCceEEEecCCCccCccccc
Q 020063 300 TCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.|.||.++|.+.+..++++|+|.|...|+-
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~ 30 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLK 30 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHH
Confidence 599999999777789999999999999974
No 40
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.00013 Score=75.49 Aligned_cols=35 Identities=34% Similarity=0.540 Sum_probs=31.4
Q ss_pred CCccccccccccCCCce--EEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDGEK--LKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~--vRvLPC~H~FH~~Cl~~~ 331 (331)
..+.|+||+|+...++. .+.|||+|+||..||.-|
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W 326 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSW 326 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHH
Confidence 46899999999999987 899999999999999654
No 41
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.62 E-value=0.0006 Score=46.44 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=17.1
Q ss_pred ccccccccCCCce-EEEecCCCccCccccc
Q 020063 301 CAICLEDYQDGEK-LKVLSCKHGRFLLLLV 329 (331)
Q Consensus 301 CaICLedf~~gd~-vRvLPC~H~FH~~Cl~ 329 (331)
|.||.| |.+.|. =.+|||+|.|=++||-
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~ 29 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQ 29 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHH
Confidence 899999 877764 4789999999988873
No 42
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.62 E-value=0.00072 Score=66.83 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=29.4
Q ss_pred CCccccccccccCCC-ceEEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDG-EKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~g-d~vRvLPC~H~FH~~Cl~~~ 331 (331)
+-++|+||||-..+. ..|+..+|.|.||..||-+|
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w 209 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW 209 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhc
Confidence 357999999998775 36788889999999999876
No 43
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.50 E-value=0.00058 Score=53.17 Aligned_cols=34 Identities=21% Similarity=0.605 Sum_probs=26.0
Q ss_pred CccccccccccC--------CCceEE-Eec-CCCccCccccccC
Q 020063 298 GETCAICLEDYQ--------DGEKLK-VLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 298 ~~~CaICLedf~--------~gd~vR-vLP-C~H~FH~~Cl~~~ 331 (331)
++.|.||...|+ +||..- ++. |+|.||..||+.|
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kW 64 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKW 64 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHH
Confidence 578999988887 566432 333 9999999999865
No 44
>PHA02926 zinc finger-like protein; Provisional
Probab=96.28 E-value=0.00039 Score=63.18 Aligned_cols=37 Identities=19% Similarity=0.450 Sum_probs=27.2
Q ss_pred CCCCccccccccccCC----Cc-eEEEec-CCCccCccccccC
Q 020063 295 CHGGETCAICLEDYQD----GE-KLKVLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 295 ~~~~~~CaICLedf~~----gd-~vRvLP-C~H~FH~~Cl~~~ 331 (331)
.+.+.+|+||+|..-+ +| .-.+|+ |+|.|...||..|
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~W 209 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIW 209 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHH
Confidence 3456899999998532 23 345776 9999999998654
No 45
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.16 E-value=0.0012 Score=46.12 Aligned_cols=31 Identities=23% Similarity=0.383 Sum_probs=23.4
Q ss_pred cccccccccCCCceEEEecCC-----CccCccccccC
Q 020063 300 TCAICLEDYQDGEKLKVLSCK-----HGRFLLLLVLF 331 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~-----H~FH~~Cl~~~ 331 (331)
.|.||+++ .+++...+.||. |.+|..||-.|
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W 36 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERW 36 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHH
Confidence 48999994 444445589975 99999999654
No 46
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.41 E-value=0.011 Score=47.19 Aligned_cols=31 Identities=16% Similarity=0.419 Sum_probs=27.1
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
+...|++|=..+.. ...-+.||+|.||..|+
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~ 107 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCI 107 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCCeEEecccc
Confidence 35789999999877 67888999999999996
No 47
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=95.33 E-value=0.0058 Score=42.54 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=23.4
Q ss_pred CccccccccccCCCceEEEecCCCc-cCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHG-RFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl~ 329 (331)
+..|.||++..++ +-.+||+|. |...|+.
T Consensus 2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~ 31 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLPCGHLCFCEECAE 31 (50)
T ss_dssp HSB-TTTSSSBSS---EEEETTCEEEEEHHHHH
T ss_pred cCCCccCCccCCc---eEEeCCCChHHHHHHhH
Confidence 3689999998665 788999999 9888864
No 48
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.0068 Score=56.53 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.9
Q ss_pred CCccccccccccCCCc-------eEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGE-------KLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd-------~vRvLPC~H~FH~~Cl~ 329 (331)
++..||||-..+...+ +.-.|.|+|.||..||=
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIr 262 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIR 262 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhh
Confidence 5679999988776655 78899999999999984
No 49
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=94.75 E-value=0.013 Score=39.53 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=20.5
Q ss_pred ccccccccCCCceEEEecCCCccCccccc
Q 020063 301 CAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 301 CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
|+||++-|++ =..|+|+|.|=++||-
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~ 26 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLE 26 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHH
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHH
Confidence 8999999987 3468999999999874
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.72 E-value=0.0084 Score=56.72 Aligned_cols=32 Identities=25% Similarity=0.562 Sum_probs=30.0
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|.|||=.|.+++...+.+|-|.||-.||-
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~Cla 146 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLA 146 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHH
Confidence 46899999999999999999999999999983
No 51
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=0.0045 Score=61.96 Aligned_cols=35 Identities=20% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCccccccccccC---CCceEE-----------EecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQ---DGEKLK-----------VLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~---~gd~vR-----------vLPC~H~FH~~Cl~~~ 331 (331)
....|+||+.+-. .|...- +.||+|+||+.||..|
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~W 618 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQW 618 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHH
Confidence 4568999998743 333222 3489999999999765
No 52
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.63 E-value=0.0061 Score=51.39 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=29.6
Q ss_pred CccccccccccCCCceEEEecCC------CccCccccccC
Q 020063 298 GETCAICLEDYQDGEKLKVLSCK------HGRFLLLLVLF 331 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~------H~FH~~Cl~~~ 331 (331)
..+|+||++...+++-|-.++|+ |.||.+|+..|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 57999999999998888889985 99999998654
No 53
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=0.014 Score=51.31 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=24.5
Q ss_pred CCCccccccccccCCCceEEE-ecCCCccCcccc
Q 020063 296 HGGETCAICLEDYQDGEKLKV-LSCKHGRFLLLL 328 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRv-LPC~H~FH~~Cl 328 (331)
.....|.|||++|.+... + .-|||+|=+.||
T Consensus 129 ~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Ci 160 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCI 160 (187)
T ss_pred ccccCCCceecchhhccc--cccccchhHHHHHH
Confidence 345789999999887543 5 349999999997
No 54
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.00 E-value=0.016 Score=43.57 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=13.3
Q ss_pred CccccccccccCCCceE--EEe---cCCCccCccccccC
Q 020063 298 GETCAICLEDYQDGEKL--KVL---SCKHGRFLLLLVLF 331 (331)
Q Consensus 298 ~~~CaICLedf~~gd~v--RvL---PC~H~FH~~Cl~~~ 331 (331)
+.+|.||.+...+.+++ .+- .|++.||..||.-|
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~w 40 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEW 40 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHH
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHH
Confidence 36899999987644322 233 28999999999643
No 55
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=92.95 E-value=0.072 Score=38.00 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=28.1
Q ss_pred CccccccccccCCCceEEEec-CCCccCcccc
Q 020063 298 GETCAICLEDYQDGEKLKVLS-CKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl 328 (331)
..-|.+|=+.|+++|-+-+-| |+-.||++|-
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~ 36 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCW 36 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHH
Confidence 468999999999998888888 9999999995
No 56
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=92.52 E-value=0.17 Score=44.16 Aligned_cols=37 Identities=19% Similarity=0.175 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCC-------------------HHHHHHHHHHcCCcEEEEeccCC
Q 020063 146 DHINFVLIVRGQCI-------------------FEDKIRNAQAAGYRAAIVYNDRE 182 (331)
Q Consensus 146 ~~~~IvLV~RG~Cs-------------------F~~Kv~~Aq~aGA~avIV~n~~~ 182 (331)
.++|||+|.+|+=. ...|.+.|+++||.|||+.++..
T Consensus 48 VkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 48 VKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred cCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 45888888876543 33599999999999999998764
No 57
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.31 E-value=0.038 Score=42.38 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=22.2
Q ss_pred ccccccccccCCCceEEEec--CCCccCccccccC
Q 020063 299 ETCAICLEDYQDGEKLKVLS--CKHGRFLLLLVLF 331 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLP--C~H~FH~~Cl~~~ 331 (331)
++|.-|.....+||+..+.= |+|.||..||-.|
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rW 66 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRW 66 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHH
Confidence 34555555555777655544 9999999998543
No 58
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.013 Score=44.58 Aligned_cols=33 Identities=27% Similarity=0.595 Sum_probs=25.1
Q ss_pred ccccccccccC--------CCceEE-Eec-CCCccCccccccC
Q 020063 299 ETCAICLEDYQ--------DGEKLK-VLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 299 ~~CaICLedf~--------~gd~vR-vLP-C~H~FH~~Cl~~~ 331 (331)
++|-||--.|. +||..- ++- |.|.||..|++.|
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~w 63 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKW 63 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 48888888886 466543 444 9999999999864
No 59
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=92.16 E-value=0.052 Score=39.05 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=24.0
Q ss_pred ccccccccccCCCceEEEecCCCccCcccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
-.|+||++-+++- -++||+|.|-++||..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~ 30 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEK 30 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHH
Confidence 3699999998874 3578999999999863
No 60
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.51 E-value=0.67 Score=43.91 Aligned_cols=32 Identities=19% Similarity=0.451 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~~ 331 (331)
....|.+|||.-.+ --.+||||+|==+||.-|
T Consensus 238 a~~kC~LCLe~~~~---pSaTpCGHiFCWsCI~~w 269 (293)
T KOG0317|consen 238 ATRKCSLCLENRSN---PSATPCGHIFCWSCILEW 269 (293)
T ss_pred CCCceEEEecCCCC---CCcCcCcchHHHHHHHHH
Confidence 34789999997544 457899999999998644
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.35 E-value=0.089 Score=51.62 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.7
Q ss_pred CccccccccccCCC-ceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDG-EKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~g-d~vRvLPC~H~FH~~Cl~ 329 (331)
+--|--|=|.|-.. |.+.-|||.|+||..|+-
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~ 397 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQ 397 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHH
Confidence 34799999998776 589999999999999984
No 62
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=0.34 Score=47.08 Aligned_cols=24 Identities=42% Similarity=0.935 Sum_probs=19.6
Q ss_pred CCCccccccccccCCCceEEEecCCCc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHG 322 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~ 322 (331)
+.+.+|.|||.+=++ .-+|||+|.
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHL 311 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHL 311 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhh
Confidence 346799999998665 679999995
No 63
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.39 E-value=0.23 Score=49.17 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=27.4
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
.-..|.||.+++.--+....|||+|+|-+.|+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~ 214 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCL 214 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHH
Confidence 34689999999555588999999999999997
No 64
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=0.2 Score=53.85 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.+++|.+|--.+... .--+-||+|.||+.||.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~ 847 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLI 847 (911)
T ss_pred CccchHHhcchhhcC-cceeeeccchHHHHHHH
Confidence 357999998776544 56688999999999985
No 65
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.04 E-value=0.089 Score=56.73 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=25.5
Q ss_pred CCCCccccccccccCCCc-e--EEEec-CCCccCccccccC
Q 020063 295 CHGGETCAICLEDYQDGE-K--LKVLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd-~--vRvLP-C~H~FH~~Cl~~~ 331 (331)
.++.++||||-.-...=| + -+.-| |+|-||..||+-|
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKW 1506 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKW 1506 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHH
Confidence 456789999987654222 1 12333 8999999999865
No 66
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.78 E-value=0.11 Score=55.01 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=30.7
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~~ 331 (331)
....|.+||..|.++...-..+|.|.||.+|+--|
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW 156 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW 156 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence 34689999999999999989999999999998543
No 67
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.07 E-value=0.27 Score=49.93 Aligned_cols=30 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+|||++... -+|.. |||+|=-.||+.
T Consensus 186 ~~~CPICL~~~~~--p~~t~-CGHiFC~~CiLq 215 (513)
T KOG2164|consen 186 DMQCPICLEPPSV--PVRTN-CGHIFCGPCILQ 215 (513)
T ss_pred CCcCCcccCCCCc--ccccc-cCceeeHHHHHH
Confidence 5789999998544 23333 999999999975
No 68
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=83.65 E-value=0.44 Score=53.79 Aligned_cols=49 Identities=20% Similarity=0.438 Sum_probs=34.7
Q ss_pred hccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCcccc
Q 020063 279 VEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 279 i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
-.-||+...++.+. ..+..+.|.||..|--..--.-.|.|+|+||..|-
T Consensus 3468 E~CLPCl~Cdks~t-kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~ 3516 (3738)
T KOG1428|consen 3468 EHCLPCLHCDKSAT-KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCC 3516 (3738)
T ss_pred hhcccccccChhhh-hcccCceEEEEehhhhCCCcceecCCccchhHHHH
Confidence 34466666554333 23456899999998665666778999999999884
No 69
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.78 E-value=0.46 Score=38.31 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=14.6
Q ss_pred CceEEEec-CCCccCccccccC
Q 020063 311 GEKLKVLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 311 gd~vRvLP-C~H~FH~~Cl~~~ 331 (331)
+|-.-.-- |+|.||-.|+-.|
T Consensus 72 ~EC~VaWG~CNHaFH~hCisrW 93 (114)
T KOG2930|consen 72 EECTVAWGVCNHAFHFHCISRW 93 (114)
T ss_pred CceEEEeeecchHHHHHHHHHH
Confidence 34344444 9999999998543
No 71
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.11 E-value=0.83 Score=42.01 Aligned_cols=33 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCccccccC
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~~ 331 (331)
...-+|.||||-=++ - -+..|+|.|==-||..|
T Consensus 45 ~~~FdCNICLd~akd--P-VvTlCGHLFCWpClyqW 77 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKD--P-VVTLCGHLFCWPCLYQW 77 (230)
T ss_pred CCceeeeeeccccCC--C-EEeecccceehHHHHHH
Confidence 456799999997444 3 24459999988888655
No 72
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.02 E-value=1.1 Score=41.88 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=24.4
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+||+|.-.. --.+||+|+|=-.||+-
T Consensus 215 d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~ 244 (271)
T COG5574 215 DYKCFLCLEEPEV---PSCTPCGHLFCLSCLLI 244 (271)
T ss_pred ccceeeeecccCC---cccccccchhhHHHHHH
Confidence 4689999997443 56789999999999874
No 73
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=73.51 E-value=2.5 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=25.0
Q ss_pred cccccccccCCCceEEEecCCCccCccccc
Q 020063 300 TCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.|.||-..-.+++.|.---|+..||..|+=
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~ 30 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVG 30 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTST
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCC
Confidence 388999977777777777799999999974
No 74
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.35 E-value=1.7 Score=39.92 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|..|-....+||.+| |-|-|.||=+||=
T Consensus 50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~Cln 80 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLN 80 (299)
T ss_pred CCCCceeCCccccCccee-ehhhhhHHHHHhh
Confidence 468999999999999987 5699999999973
No 75
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.76 E-value=2.4 Score=41.57 Aligned_cols=34 Identities=24% Similarity=0.591 Sum_probs=25.0
Q ss_pred CCccccccccccCCCc----eEEEec-CCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGE----KLKVLS-CKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd----~vRvLP-C~H~FH~~Cl~~ 330 (331)
.+.+|.||+|.--+.- ..++|| |.|.|=..|+=-
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~ 198 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRK 198 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHh
Confidence 4679999999743322 246678 999999999743
No 76
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=61.75 E-value=13 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.184 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCHHHHHHHHHH-cCCcEEEEeccCCCCcccccccCCCCceEEEEEEecc
Q 020063 149 NFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (331)
Q Consensus 149 ~IvLV~RG~CsF~~Kv~~Aq~-aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~Is~~ 206 (331)
+|.|..+-+|++-.|++.+.+ .|..... .|...+.....+.......++|+++|...
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~-~~v~~~~~~~~~~~~~g~~~vP~ifi~g~ 59 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEE-IPLGKDITGRSLRAVTGAMTVPQVFIDGE 59 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEE-EECCCChhHHHHHHHhCCCCcCeEEECCE
Confidence 578889999999999998876 4655433 34332111111211112347899988854
No 77
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=60.49 E-value=9 Score=41.10 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCC
Q 020063 147 HINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDRE 182 (331)
Q Consensus 147 ~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~ 182 (331)
.++|+|++=|.-.+.+|++||+++||.+||+|.+..
T Consensus 184 ~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~~ 219 (702)
T KOG2195|consen 184 SGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDPY 219 (702)
T ss_pred cCceEEEEccccchhhhHhhHHHhhcCcEEEeeccc
Confidence 489999999999999999999999999999998753
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.30 E-value=0.68 Score=45.58 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=29.6
Q ss_pred CccccccccccCCC-ceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDG-EKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~g-d~vRvLPC~H~FH~~Cl~ 329 (331)
...|+||-++|++. |++..+-|+|.+|..||=
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~ 228 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLS 228 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 46899999999999 999999999999999973
No 79
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=59.95 E-value=15 Score=27.46 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=36.8
Q ss_pred CCCeEEEEEcCCCCHHHHHHHHHH-cCCcEEEEeccCCCCcccccccCCCCceEEEEEEecc
Q 020063 146 DHINFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLE 206 (331)
Q Consensus 146 ~~~~IvLV~RG~CsF~~Kv~~Aq~-aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~Is~~ 206 (331)
+..+|.|..+-+|.+-.|++..-+ .|.....+ |-..+.....+..-....++|++++...
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~i-di~~~~~~~~~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEI-PLGNDARGRSLRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEE-ECCCChHHHHHHHHHCCCCcCeEEECCE
Confidence 457899999999999999997765 56555543 3222111111211112257899988754
No 80
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.84 E-value=4.5 Score=43.34 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=17.1
Q ss_pred cccccccccC-CC---ceEEEecCCCccCcccc
Q 020063 300 TCAICLEDYQ-DG---EKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 300 ~CaICLedf~-~g---d~vRvLPC~H~FH~~Cl 328 (331)
-|.-|.+--- .| +.+.++-|+|.||+.|+
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~ 818 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECL 818 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhccc
Confidence 4666655422 23 45666667777777775
No 81
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=59.83 E-value=2.1 Score=38.56 Aligned_cols=28 Identities=32% Similarity=0.663 Sum_probs=22.6
Q ss_pred CccccccccccCCCceEEEec-CCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLS-CKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl~ 329 (331)
.-.|.||-++|+. ++.. |+|.|--.|..
T Consensus 196 PF~C~iCKkdy~s----pvvt~CGH~FC~~Cai 224 (259)
T COG5152 196 PFLCGICKKDYES----PVVTECGHSFCSLCAI 224 (259)
T ss_pred ceeehhchhhccc----hhhhhcchhHHHHHHH
Confidence 3589999999987 4555 99999888853
No 82
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=59.45 E-value=3.4 Score=28.40 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=20.2
Q ss_pred ccccccccCCCceEEEecC--C---CccCccccccC
Q 020063 301 CAICLEDYQDGEKLKVLSC--K---HGRFLLLLVLF 331 (331)
Q Consensus 301 CaICLedf~~gd~vRvLPC--~---H~FH~~Cl~~~ 331 (331)
|-||+++-.+.+ --+.|| + -.-|.+||-.|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W 35 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERW 35 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHH
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHH
Confidence 779999977776 345775 3 38899998653
No 83
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.63 E-value=7.6 Score=38.03 Aligned_cols=24 Identities=21% Similarity=0.621 Sum_probs=20.2
Q ss_pred CCCccccccccccCCCceEEEecCCCc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHG 322 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~ 322 (331)
+-.+.|.||+++.++ .-.+||+|.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvpcGh~ 326 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVPCGHV 326 (355)
T ss_pred CCCCceEEecCCccc---eeeecCCcE
Confidence 345799999999877 678999997
No 84
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=57.62 E-value=5.4 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
-...|+|.+..|+ |-|+-..|+|.|-++.|.
T Consensus 10 ~~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~ 40 (57)
T PF11789_consen 10 ISLKCPITLQPFE--DPVKSKKCGHTFEKEAIL 40 (57)
T ss_dssp --SB-TTTSSB-S--SEEEESSS--EEEHHHHH
T ss_pred eccCCCCcCChhh--CCcCcCCCCCeecHHHHH
Confidence 3568999999987 678888999999887664
No 85
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=46.81 E-value=15 Score=32.21 Aligned_cols=21 Identities=19% Similarity=0.233 Sum_probs=9.9
Q ss_pred hhhHHHHHHHHHhhhhccCCC
Q 020063 240 VFSLIVVFALFAVAFITPRPW 260 (331)
Q Consensus 240 fi~llvi~~v~l~~~~~~r~~ 260 (331)
|++++.+.++++.||+++..|
T Consensus 98 ~~Vl~g~s~l~i~yfvir~~R 118 (163)
T PF06679_consen 98 LYVLVGLSALAILYFVIRTFR 118 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555544433
No 86
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=43.70 E-value=11 Score=24.34 Aligned_cols=25 Identities=28% Similarity=0.680 Sum_probs=17.2
Q ss_pred cccccccccCCCce--------EEEecCCCccC
Q 020063 300 TCAICLEDYQDGEK--------LKVLSCKHGRF 324 (331)
Q Consensus 300 ~CaICLedf~~gd~--------vRvLPC~H~FH 324 (331)
+|.=|...|+-.|. ||.-.|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57777777765543 66666889886
No 87
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=40.28 E-value=16 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.5
Q ss_pred CccccccccccCCCceEEEec--CCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLS--CKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLP--C~H~FH~~Cl~ 329 (331)
...|.||... .|-.++--- |...||..|..
T Consensus 55 ~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKS--GGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHH
Confidence 4699999997 777777777 99999999975
No 88
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=39.77 E-value=7.8 Score=41.96 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=26.8
Q ss_pred CCCccccccccccCCCceEEEe-cCCCccCccccccC
Q 020063 296 HGGETCAICLEDYQDGEKLKVL-SCKHGRFLLLLVLF 331 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvL-PC~H~FH~~Cl~~~ 331 (331)
.+..+|.||+|..+.-+-+=-- .|=|+||..||--|
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~W 225 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKW 225 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHH
Confidence 3457999999998877644222 28899999998544
No 89
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=39.45 E-value=17 Score=37.85 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCCccccccccccCC-----------CceEEEecCCCccCcccc
Q 020063 296 HGGETCAICLEDYQD-----------GEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 296 ~~~~~CaICLedf~~-----------gd~vRvLPC~H~FH~~Cl 328 (331)
.....|+||-|.|++ .|.|++- =+-+||..|+
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le-~G~ifH~~Cl 553 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE-FGRIFHSKCL 553 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec-cCceeecccc
Confidence 346789999999875 2334444 5789999997
No 90
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=39.35 E-value=6.9 Score=40.93 Aligned_cols=31 Identities=16% Similarity=0.387 Sum_probs=22.7
Q ss_pred Cccccccccc-----cCCCceEEEecCCCccCcccc
Q 020063 298 GETCAICLED-----YQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLed-----f~~gd~vRvLPC~H~FH~~Cl 328 (331)
...|-+|-.+ |+.....|..-|+|+||++|+
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~ 546 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCL 546 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHH
Confidence 4578888443 554445677779999999997
No 91
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=36.63 E-value=24 Score=28.29 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=22.5
Q ss_pred ecCCCCCccceeeehhhhHHHHHHHHHhhhhccC
Q 020063 225 FPESNRGSWSVLMVSVFSLIVVFALFAVAFITPR 258 (331)
Q Consensus 225 ~p~~~~~~w~~l~I~fi~llvi~~v~l~~~~~~r 258 (331)
.|+-...+|-+++|++.++++.+-++..+|++.|
T Consensus 10 KPsGsL~PWeIfLItLasVvvavGl~aGLfFcvR 43 (106)
T PF14654_consen 10 KPSGSLKPWEIFLITLASVVVAVGLFAGLFFCVR 43 (106)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555566898888888887777666655444433
No 92
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=34.79 E-value=38 Score=20.88 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=18.1
Q ss_pred ccccccccCCCceEEEecCCCccCcccc
Q 020063 301 CAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 301 CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
|+.|-+...+++.. +..=+..||..|.
T Consensus 2 C~~C~~~i~~~~~~-~~~~~~~~H~~Cf 28 (39)
T smart00132 2 CAGCGKPIRGGELV-LRALGKVWHPECF 28 (39)
T ss_pred ccccCCcccCCcEE-EEeCCccccccCC
Confidence 77888887776332 2223788999885
No 93
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=33.95 E-value=94 Score=23.75 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=39.2
Q ss_pred CeEEEEEcC-----CCCHHHHHHHHHH-cCCcEEEEeccCCCCccc-ccccCCCCceEEEEEEeccc---hHHHHHHhc
Q 020063 148 INFVLIVRG-----QCIFEDKIRNAQA-AGYRAAIVYNDREKGSLV-SMTASHEGVKVHAIFVSLET---GVYLKEHAR 216 (331)
Q Consensus 148 ~~IvLV~RG-----~CsF~~Kv~~Aq~-aGA~avIV~n~~~~~~~~-~m~~~~~~i~IP~v~Is~~~---G~~L~~~l~ 216 (331)
++|++...| .|.|-.|++..-+ .|...-. .|-..+.... .+.......++|.+||...- .+.+.++.+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~-idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGT-FDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEE-EEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHHHH
Confidence 678888876 8999999987765 5654433 3432221111 11111123478999998653 255655544
No 94
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.91 E-value=65 Score=23.34 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=23.9
Q ss_pred CCccccccccccCC--CceEEEec-CCCccCcc
Q 020063 297 GGETCAICLEDYQD--GEKLKVLS-CKHGRFLL 326 (331)
Q Consensus 297 ~~~~CaICLedf~~--gd~vRvLP-C~H~FH~~ 326 (331)
.+.+|+.|-..-+. .+..-.-| |++.+|++
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECcH
Confidence 56899999988887 55666666 99999986
No 95
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=32.49 E-value=12 Score=35.64 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=26.2
Q ss_pred CccccccccccCCCc-eEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDGE-KLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd-~vRvLPC~H~FH~~Cl 328 (331)
...|+||.|..-++. .+.+|+|+|.-|..|+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf 189 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCF 189 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHH
Confidence 345999999988875 6799999999998875
No 96
>PRK10638 glutaredoxin 3; Provisional
Probab=32.15 E-value=71 Score=23.84 Aligned_cols=67 Identities=15% Similarity=0.177 Sum_probs=39.0
Q ss_pred eEEEEEcCCCCHHHHHHHHHH-cCCcEEEEeccCCCCc-ccccccCCCCceEEEEEEeccc--h-HHHHHHhc
Q 020063 149 NFVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGS-LVSMTASHEGVKVHAIFVSLET--G-VYLKEHAR 216 (331)
Q Consensus 149 ~IvLV~RG~CsF~~Kv~~Aq~-aGA~avIV~n~~~~~~-~~~m~~~~~~i~IP~v~Is~~~--G-~~L~~~l~ 216 (331)
+|.+..+-.|.|-.|++.+-+ .|....++ |-..+.. ...+.......++|++++...- | +.++++.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~-dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEI-PIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEE-ECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHH
Confidence 577888999999999997765 67766654 3322111 1111111122478999887543 2 44555443
No 97
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=31.90 E-value=25 Score=32.65 Aligned_cols=9 Identities=89% Similarity=1.505 Sum_probs=6.8
Q ss_pred eEEEEcCCc
Q 020063 4 YYYISTSRG 12 (331)
Q Consensus 4 ~~~~~~~~~ 12 (331)
|||||||-|
T Consensus 127 YY~IStStg 135 (233)
T KOG3858|consen 127 YYYISTSTG 135 (233)
T ss_pred EEEEeCCCc
Confidence 788888765
No 98
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.77 E-value=21 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.9
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.-.|.||=++..+|++-...+ +-..|-+|++
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~ 36 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLA 36 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHH
Confidence 458999999999999999999 8888999985
No 99
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=31.37 E-value=30 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=24.7
Q ss_pred Cccccccccc-----cCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLED-----YQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLed-----f~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+..|.+|-++ |+.....|.--|+..||+.|..
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 4689999864 6665566666699999999964
No 100
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=31.25 E-value=82 Score=22.74 Aligned_cols=55 Identities=18% Similarity=0.042 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCHHHHHHHHH-HcCCcEEEEeccCCCCc----ccccccCCCCceEEEEEEecc
Q 020063 148 INFVLIVRGQCIFEDKIRNAQ-AAGYRAAIVYNDREKGS----LVSMTASHEGVKVHAIFVSLE 206 (331)
Q Consensus 148 ~~IvLV~RG~CsF~~Kv~~Aq-~aGA~avIV~n~~~~~~----~~~m~~~~~~i~IP~v~Is~~ 206 (331)
++|.|-...+|++-.|++.+- +.|.....+ |-..+.. +..+. ....+|.+++...
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~-di~~~~~~~~el~~~~---g~~~vP~v~i~~~ 60 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEI-NIDIFPERKAELEERT---GSSVVPQIFFNEK 60 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEE-ECCCCHHHHHHHHHHh---CCCCcCEEEECCE
Confidence 467888889999999999855 567665543 4332111 11111 1246788888754
No 101
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=31.04 E-value=16 Score=35.19 Aligned_cols=29 Identities=24% Similarity=0.380 Sum_probs=19.8
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..|--| ||--.---|.+||+|+|=.+|.-
T Consensus 91 HfCd~C--d~PI~IYGRmIPCkHvFCl~CAr 119 (389)
T KOG2932|consen 91 HFCDRC--DFPIAIYGRMIPCKHVFCLECAR 119 (389)
T ss_pred Eeeccc--CCcceeeecccccchhhhhhhhh
Confidence 355555 33333345899999999999864
No 102
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=30.28 E-value=28 Score=22.51 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=18.0
Q ss_pred cccccccccCCCc--------eEEEecCCCccCc
Q 020063 300 TCAICLEDYQDGE--------KLKVLSCKHGRFL 325 (331)
Q Consensus 300 ~CaICLedf~~gd--------~vRvLPC~H~FH~ 325 (331)
+|.=|-..|+-.| +||---|+|.|+.
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~v 37 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFRV 37 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEeeC
Confidence 5777777776544 4666669999974
No 103
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.48 E-value=40 Score=32.05 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=23.8
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..+..+|++|-+. +----...||+|.|---|+.
T Consensus 236 ~t~~~~C~~Cg~~--PtiP~~~~~C~HiyCY~Ci~ 268 (298)
T KOG2879|consen 236 GTSDTECPVCGEP--PTIPHVIGKCGHIYCYYCIA 268 (298)
T ss_pred ccCCceeeccCCC--CCCCeeeccccceeehhhhh
Confidence 3456799999886 33334566799999888875
No 104
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=29.12 E-value=23 Score=26.17 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=0.4
Q ss_pred HHHHHHHhhhhccCCCC
Q 020063 245 VVFALFAVAFITPRPWR 261 (331)
Q Consensus 245 vi~~v~l~~~~~~r~~~ 261 (331)
+++++++++|+++|.++
T Consensus 22 ll~ailLIlf~iyR~rk 38 (64)
T PF01034_consen 22 LLFAILLILFLIYRMRK 38 (64)
T ss_dssp ---------------S-
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34444455555555433
No 105
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=29.12 E-value=1.2e+02 Score=22.59 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=35.4
Q ss_pred eEEEEEcCCCCHHHHHHHHHHc-----CCcEEEEeccCCCC----cccccccCCCCceEEEEEEeccc
Q 020063 149 NFVLIVRGQCIFEDKIRNAQAA-----GYRAAIVYNDREKG----SLVSMTASHEGVKVHAIFVSLET 207 (331)
Q Consensus 149 ~IvLV~RG~CsF~~Kv~~Aq~a-----GA~avIV~n~~~~~----~~~~m~~~~~~i~IP~v~Is~~~ 207 (331)
+|.+..+.+|.+=.|++..-+. ........|-..+. .+..+.+. ...++|.++|...-
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi~g~~ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFVDQKH 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEECCEE
Confidence 5788889999999999988776 33344444443211 12222221 11478999987543
No 106
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=28.31 E-value=39 Score=27.03 Aligned_cols=16 Identities=13% Similarity=0.303 Sum_probs=8.0
Q ss_pred eeehhhhHHHHHHHHH
Q 020063 236 LMVSVFSLIVVFALFA 251 (331)
Q Consensus 236 l~I~fi~llvi~~v~l 251 (331)
.+++|+++++++.++.
T Consensus 67 ~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 67 SLLSFVCILVILYAIY 82 (101)
T ss_pred HHHHHHHHHHHHhhhe
Confidence 4555565554444333
No 107
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=28.02 E-value=19 Score=26.88 Aligned_cols=30 Identities=20% Similarity=0.145 Sum_probs=22.0
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
++-.|+||.+=+++ -| ++||+|.|=+.||.
T Consensus 3 ~~f~CpIt~~lM~d--PV-i~~~G~tyer~~I~ 32 (73)
T PF04564_consen 3 DEFLCPITGELMRD--PV-ILPSGHTYERSAIE 32 (73)
T ss_dssp GGGB-TTTSSB-SS--EE-EETTSEEEEHHHHH
T ss_pred cccCCcCcCcHhhC--ce-eCCcCCEEcHHHHH
Confidence 45689999998766 33 57999999888874
No 108
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=27.60 E-value=29 Score=20.91 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=13.9
Q ss_pred cccccccccCCCceEEEec-CCCccC
Q 020063 300 TCAICLEDYQDGEKLKVLS-CKHGRF 324 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLP-C~H~FH 324 (331)
.|+-|-.+. -...+.-| |+|.|-
T Consensus 2 ~CP~C~~~V--~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEV--PESAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCc--hhhcCcCCCCCCCCc
Confidence 455665553 23345668 888884
No 109
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=27.25 E-value=32 Score=25.53 Aligned_cols=14 Identities=43% Similarity=1.059 Sum_probs=6.8
Q ss_pred Cccccccccccccc
Q 020063 11 RGWGWGWGWRWGWG 24 (331)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (331)
|++||--||-=||+
T Consensus 51 ~~YG~nkGwn~Gw~ 64 (71)
T PF04202_consen 51 RRYGGNKGWNNGWK 64 (71)
T ss_pred cccCcccccccccc
Confidence 44555555544443
No 110
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.92 E-value=5.3 Score=39.08 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=24.3
Q ss_pred CCccccccccccCCCceEEEec-CCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLS-CKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl~ 329 (331)
.+-.|.|||+-.+. -+..+ |.|-|-.+||+
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~ 72 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIW 72 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHH
Confidence 46799999998765 34556 99999999986
No 111
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=26.72 E-value=94 Score=21.34 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=30.9
Q ss_pred EEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcc-cccccCCCCceEEEEEEec
Q 020063 150 FVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL-VSMTASHEGVKVHAIFVSL 205 (331)
Q Consensus 150 IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~-~~m~~~~~~i~IP~v~Is~ 205 (331)
|.+..+.+|++-.|++.+-+.-.......|-..+... ..+..-....++|++++..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFING 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECC
Confidence 6677888999999999876543344444454332111 1111111124678777753
No 112
>PRK10824 glutaredoxin-4; Provisional
Probab=26.49 E-value=74 Score=26.15 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=39.7
Q ss_pred CeEEEEEcC-----CCCHHHHHHHHH-HcCCcEEEEeccCCCCccc-ccccCCCCceEEEEEEeccc--h-HHHHHHhc
Q 020063 148 INFVLIVRG-----QCIFEDKIRNAQ-AAGYRAAIVYNDREKGSLV-SMTASHEGVKVHAIFVSLET--G-VYLKEHAR 216 (331)
Q Consensus 148 ~~IvLV~RG-----~CsF~~Kv~~Aq-~aGA~avIV~n~~~~~~~~-~m~~~~~~i~IP~v~Is~~~--G-~~L~~~l~ 216 (331)
++|++...| .|.|-.+++..- +.|...-. +|-.++.... .|..-....++|-|||...- | ..|.++.+
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~-idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAY-VDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceE-EEecCCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHHH
Confidence 779999998 899999998776 45654332 2322111111 11111123488999998765 3 45655544
No 113
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.37 E-value=18 Score=39.25 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=18.0
Q ss_pred ccccccccccCCCceEEEec--CCCccCcccc
Q 020063 299 ETCAICLEDYQDGEKLKVLS--CKHGRFLLLL 328 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLP--C~H~FH~~Cl 328 (331)
..|..|-...+ +-... |+|.||..|+
T Consensus 841 skCs~C~~~Ld----lP~VhF~CgHsyHqhC~ 868 (933)
T KOG2114|consen 841 SKCSACEGTLD----LPFVHFLCGHSYHQHCL 868 (933)
T ss_pred eeecccCCccc----cceeeeecccHHHHHhh
Confidence 47888866543 22222 9999999997
No 114
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=25.72 E-value=22 Score=34.20 Aligned_cols=23 Identities=9% Similarity=0.580 Sum_probs=13.2
Q ss_pred eeehhhhHHHHHHHHHhhhhccC
Q 020063 236 LMVSVFSLIVVFALFAVAFITPR 258 (331)
Q Consensus 236 l~I~fi~llvi~~v~l~~~~~~r 258 (331)
++.++++++++++++++.|++.|
T Consensus 258 I~aSiiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666555544
No 115
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=28 Score=34.93 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
.++-+|.||..-+.+ --.+||+|.|=..||
T Consensus 82 ~sef~c~vc~~~l~~---pv~tpcghs~c~~Cl 111 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTPCGHSFCLECL 111 (398)
T ss_pred cchhhhhhhHhhcCC---CccccccccccHHHH
Confidence 456799999887766 335599999988885
No 116
>PHA03096 p28-like protein; Provisional
Probab=24.58 E-value=15 Score=35.09 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=25.0
Q ss_pred ccccccccccCCC----ceEEEec-CCCccCcccccc
Q 020063 299 ETCAICLEDYQDG----EKLKVLS-CKHGRFLLLLVL 330 (331)
Q Consensus 299 ~~CaICLedf~~g----d~vRvLP-C~H~FH~~Cl~~ 330 (331)
..|.||+|.-.+. ..-..|| |.|.|=..|+--
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~ 215 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKI 215 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHH
Confidence 6899999985543 3457899 999999888753
No 117
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=23.86 E-value=1.4e+02 Score=26.41 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=10.5
Q ss_pred eeeehhhhHHHHHHHHHhhhh
Q 020063 235 VLMVSVFSLIVVFALFAVAFI 255 (331)
Q Consensus 235 ~l~I~fi~llvi~~v~l~~~~ 255 (331)
.++|++-++++++++++++++
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~ 179 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFF 179 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhh
Confidence 455555555555544444443
No 118
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=23.50 E-value=18 Score=36.06 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=26.4
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCccccccC
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~~ 331 (331)
++.-+.|-||-|.=+ .|++=||+|..-..||--|
T Consensus 366 gsTFeLCKICaendK---dvkIEPCGHLlCt~CLa~W 399 (563)
T KOG1785|consen 366 GSTFELCKICAENDK---DVKIEPCGHLLCTSCLAAW 399 (563)
T ss_pred cchHHHHHHhhccCC---CcccccccchHHHHHHHhh
Confidence 344568999988633 3899999999999998654
No 119
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=23.29 E-value=1.8e+02 Score=21.81 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=36.1
Q ss_pred EEEEEcCCCCHHHHHHHHHH-cCCcEEEEeccCCCC-cccccccCC-CCceEEEEEEec
Q 020063 150 FVLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKG-SLVSMTASH-EGVKVHAIFVSL 205 (331)
Q Consensus 150 IvLV~RG~CsF~~Kv~~Aq~-aGA~avIV~n~~~~~-~~~~m~~~~-~~i~IP~v~Is~ 205 (331)
|.+..+-.|.|=.|++++-+ .|.....|..+.... ....|.... ...+.|+++|..
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~ 61 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGG 61 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECC
Confidence 55666777999999998765 687777765554321 222232222 335889999987
No 120
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=23.23 E-value=1.1e+02 Score=28.33 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=7.7
Q ss_pred CChhhhccCCeEEEcc
Q 020063 274 LDSKVVEALPCFLFSS 289 (331)
Q Consensus 274 l~~~~i~~LP~~~y~~ 289 (331)
-+++-++-|-..+.+.
T Consensus 231 sdke~vklltvkt~s~ 246 (259)
T PF07010_consen 231 SDKESVKLLTVKTISH 246 (259)
T ss_pred ccccceeEEEEEeccc
Confidence 3445555555544443
No 121
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=23.13 E-value=30 Score=36.91 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=31.8
Q ss_pred CCChhhhccCCeEEEccCCCCCCCCCccccccccccCCCce--EEEe-----cCCCccCcccc
Q 020063 273 RLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEK--LKVL-----SCKHGRFLLLL 328 (331)
Q Consensus 273 ~l~~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~--vRvL-----PC~H~FH~~Cl 328 (331)
.|..-++..+|.=+|.+ +|=||-|+=++.+. =-.+ -|+..||+.|.
T Consensus 102 TMEPIiLq~VP~dRfnK----------tCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCA 154 (900)
T KOG0956|consen 102 TMEPIILQDVPHDRFNK----------TCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCA 154 (900)
T ss_pred cccceeeccCchhhhcc----------eeeeecccCCccccccccceecccccchhhhhhhHh
Confidence 44555677778777765 89999998666542 1222 27789999995
No 122
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=22.99 E-value=61 Score=27.97 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=12.8
Q ss_pred cCCCCCccceeeehhhhHHHHHHHHHh
Q 020063 226 PESNRGSWSVLMVSVFSLIVVFALFAV 252 (331)
Q Consensus 226 p~~~~~~w~~l~I~fi~llvi~~v~l~ 252 (331)
|...+....++++++.+++.++.++++
T Consensus 113 p~~gY~nklilaisvtvv~~iliii~C 139 (154)
T PF14914_consen 113 PGYGYNNKLILAISVTVVVMILIIIFC 139 (154)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHH
Confidence 444444455555555554433333333
No 123
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.62 E-value=30 Score=28.92 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=3.8
Q ss_pred HHhhhhccC
Q 020063 250 FAVAFITPR 258 (331)
Q Consensus 250 ~l~~~~~~r 258 (331)
++++|+++|
T Consensus 82 lli~y~irR 90 (122)
T PF01102_consen 82 LLISYCIRR 90 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444444
No 124
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=22.47 E-value=64 Score=23.54 Aligned_cols=17 Identities=29% Similarity=0.630 Sum_probs=14.7
Q ss_pred CCCceEEEecCCCccCc
Q 020063 309 QDGEKLKVLSCKHGRFL 325 (331)
Q Consensus 309 ~~gd~vRvLPC~H~FH~ 325 (331)
++|+-|-.|.|+|.=|.
T Consensus 7 ee~hWVA~L~CGH~QHv 23 (61)
T PF12088_consen 7 EEGHWVAELSCGHTQHV 23 (61)
T ss_pred ccCCEEEEecccccccc
Confidence 47889999999998775
No 125
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=22.41 E-value=57 Score=31.16 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=9.5
Q ss_pred hhhHHHHHHHHHhhhhccCCC
Q 020063 240 VFSLIVVFALFAVAFITPRPW 260 (331)
Q Consensus 240 fi~llvi~~v~l~~~~~~r~~ 260 (331)
.+++.++++++++.|++.|+|
T Consensus 278 G~~La~lvlivLiaYli~Rrr 298 (306)
T PF01299_consen 278 GAALAGLVLIVLIAYLIGRRR 298 (306)
T ss_pred HHHHHHHHHHHHHhheeEecc
Confidence 333444444444555554433
No 126
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=22.04 E-value=58 Score=32.02 Aligned_cols=50 Identities=22% Similarity=0.233 Sum_probs=30.7
Q ss_pred hhhhccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 276 SKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 276 ~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+..+..-|..+-+.++ +...+.+.|.||-+... -+-++||+|---..|.|
T Consensus 40 KNnlsaEPnlttsSad-dtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~ 89 (493)
T COG5236 40 KNNLSAEPNLTTSSAD-DTDEENMNCQICAGSTT---YSARYPCGHQICHACAV 89 (493)
T ss_pred ccccccCCcccccccc-ccccccceeEEecCCce---EEEeccCCchHHHHHHH
Confidence 3445455654443333 33446689999987643 36799999966555543
No 127
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=21.96 E-value=1.3e+02 Score=21.48 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=32.8
Q ss_pred eEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcc-ccccc-CCCCceEEEEEEecc
Q 020063 149 NFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSL-VSMTA-SHEGVKVHAIFVSLE 206 (331)
Q Consensus 149 ~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~-~~m~~-~~~~i~IP~v~Is~~ 206 (331)
+|.|..+-.|++-.+++..-+.-....-..|-..+... ..+.. .+....+|+++|...
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 36777888899999999866543334444444322111 11111 111227899988854
No 128
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.94 E-value=58 Score=31.78 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=40.8
Q ss_pred hhhhccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 276 SKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 276 ~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+..---+|...|.+...........|=.|.++.+.+...|.=.|+|.|=.+|-|+
T Consensus 308 RSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 308 RSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVF 362 (378)
T ss_pred HHHHhhcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHH
Confidence 3333445777776654444445567999999999999888888999999999764
No 129
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=21.28 E-value=1.3e+02 Score=23.58 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=40.0
Q ss_pred CeEEEEEcC-----CCCHHHHHHHHH-HcCCcEEEEeccCCCCccc-ccccCCCCceEEEEEEeccc--h-HHHHHHhc
Q 020063 148 INFVLIVRG-----QCIFEDKIRNAQ-AAGYRAAIVYNDREKGSLV-SMTASHEGVKVHAIFVSLET--G-VYLKEHAR 216 (331)
Q Consensus 148 ~~IvLV~RG-----~CsF~~Kv~~Aq-~aGA~avIV~n~~~~~~~~-~m~~~~~~i~IP~v~Is~~~--G-~~L~~~l~ 216 (331)
++|++..+| .|.|-.|++..- +.|...-. +|-.++.... .+..-....++|.++|...- | +.|.++.+
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~-~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAY-VNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEE-EECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHHHHH
Confidence 778888886 699999998776 46776443 4433211111 11111122488999998664 2 45665554
No 130
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=21.15 E-value=1.4e+02 Score=21.49 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=29.3
Q ss_pred EEEEcCCCCHHHHHHHHHH-cCCcEEEEeccCCCCcccccccCCCCceEEEEEEec
Q 020063 151 VLIVRGQCIFEDKIRNAQA-AGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSL 205 (331)
Q Consensus 151 vLV~RG~CsF~~Kv~~Aq~-aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~Is~ 205 (331)
.|..+-+|.+-.|++.+-+ .|...-. .|-..+.....-........+|++++..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~i~~~~-~di~~~~~~~~~~~~~g~~~vP~v~~~g 56 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHGIAFEE-INIDEQPEAIDYVKAQGFRQVPVIVADG 56 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCceEE-EECCCCHHHHHHHHHcCCcccCEEEECC
Confidence 4566778999999998665 4554433 3433211111111111124788888853
No 131
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.85 E-value=23 Score=35.23 Aligned_cols=31 Identities=26% Similarity=0.532 Sum_probs=24.5
Q ss_pred CccccccccccCCC-ceEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDG-EKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~g-d~vRvLPC~H~FH~~Cl 328 (331)
..+|.||..++... +.-.++-|.|.|=..|.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~ 177 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCV 177 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHh
Confidence 57999999666666 56666669999988885
No 132
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=20.75 E-value=1.7e+02 Score=22.98 Aligned_cols=69 Identities=14% Similarity=0.186 Sum_probs=39.9
Q ss_pred CeEEEEEcCCCCHHHHHHHHHH-cCCcEEEE-eccCCC-Ccccc-cccCCCCceEEEEEEeccc--h-HHHHHHhc
Q 020063 148 INFVLIVRGQCIFEDKIRNAQA-AGYRAAIV-YNDREK-GSLVS-MTASHEGVKVHAIFVSLET--G-VYLKEHAR 216 (331)
Q Consensus 148 ~~IvLV~RG~CsF~~Kv~~Aq~-aGA~avIV-~n~~~~-~~~~~-m~~~~~~i~IP~v~Is~~~--G-~~L~~~l~ 216 (331)
++|++..+-.|.|-.+++..-+ .|...-++ .+..++ ..... +..-....++|.|+|...- | ..|.++.+
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALHI 83 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHHH
Confidence 6799999999999999998765 55543322 222211 11111 1111123488999998654 3 44555544
No 133
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=20.54 E-value=48 Score=31.71 Aligned_cols=51 Identities=24% Similarity=0.476 Sum_probs=36.2
Q ss_pred CCChhhhccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 273 RLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 273 ~l~~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.+..+.+..+.|..++ ..+...|.||+..-.+.|.+=.=-|...||.-|.=
T Consensus 295 ~M~~elv~~~KTY~W~------C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CVG 345 (381)
T KOG1512|consen 295 AMIPELVGQYKTYFWK------CSSCELCRICLGPVIESEHLFCDVCDRGPHTLCVG 345 (381)
T ss_pred hcCHHHHhHHhhcchh------hcccHhhhccCCcccchheeccccccCCCCccccc
Confidence 3455555555555444 34578999999997777766555599999999953
No 134
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.52 E-value=16 Score=38.99 Aligned_cols=25 Identities=24% Similarity=0.604 Sum_probs=19.3
Q ss_pred cccccccccCCCceEEEec-CCCccCcccc
Q 020063 300 TCAICLEDYQDGEKLKVLS-CKHGRFLLLL 328 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLP-C~H~FH~~Cl 328 (331)
.|++|-+.+++ ++++ |+|.|=-.|+
T Consensus 645 kCs~Cn~R~Kd----~vI~kC~H~FC~~Cv 670 (698)
T KOG0978|consen 645 KCSVCNTRWKD----AVITKCGHVFCEECV 670 (698)
T ss_pred eCCCccCchhh----HHHHhcchHHHHHHH
Confidence 79999877666 4667 9999977775
No 135
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=20.39 E-value=46 Score=32.80 Aligned_cols=23 Identities=9% Similarity=0.580 Sum_probs=14.4
Q ss_pred eeehhhhHHHHHHHHHhhhhccC
Q 020063 236 LMVSVFSLIVVFALFAVAFITPR 258 (331)
Q Consensus 236 l~I~fi~llvi~~v~l~~~~~~r 258 (331)
++.+++.++++++++++.|++.|
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILR 334 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777666655544
No 136
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=20.02 E-value=39 Score=30.26 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEeccCCC-----CcccccccCC------CCceEEEEEEeccchH
Q 020063 158 CIFEDKIRNAQAAGYRAAIVYNDREK-----GSLVSMTASH------EGVKVHAIFVSLETGV 209 (331)
Q Consensus 158 CsF~~Kv~~Aq~aGA~avIV~n~~~~-----~~~~~m~~~~------~~i~IP~v~Is~~~G~ 209 (331)
-+-.++++-|+++||.||......+. +....|.+.. +.++||+. -.-.-|.
T Consensus 21 V~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVM-AK~RIGH 82 (208)
T PF01680_consen 21 VTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVM-AKVRIGH 82 (208)
T ss_dssp ESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEE-EEEETT-
T ss_pred ecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEecee-eccccce
Confidence 35578999999999999998876541 2233444321 34789953 3333443
No 137
>PTZ00046 rifin; Provisional
Probab=20.02 E-value=47 Score=32.78 Aligned_cols=24 Identities=13% Similarity=0.509 Sum_probs=14.8
Q ss_pred eeehhhhHHHHHHHHHhhhhccCC
Q 020063 236 LMVSVFSLIVVFALFAVAFITPRP 259 (331)
Q Consensus 236 l~I~fi~llvi~~v~l~~~~~~r~ 259 (331)
++.+++.++++++++++.|++.|.
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRY 340 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRY 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666667777776666655443
Done!