Query 020063
Match_columns 331
No_of_seqs 303 out of 2401
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3icu_A E3 ubiquitin-protein li 99.9 6.9E-24 2.3E-28 188.3 12.6 133 101-234 51-193 (194)
2 2l0b_A E3 ubiquitin-protein li 99.2 5.6E-12 1.9E-16 98.3 4.6 59 271-330 14-72 (91)
3 1x4j_A Ring finger protein 38; 99.1 9.8E-12 3.3E-16 93.1 1.8 53 276-330 3-55 (75)
4 2ek8_A Aminopeptidase; metallo 98.9 1.1E-08 3.7E-13 100.5 12.8 92 117-215 90-181 (421)
5 3iib_A Peptidase M28; YP_92679 98.9 6.8E-09 2.3E-13 102.8 11.2 116 103-223 89-222 (444)
6 1iym_A EL5; ring-H2 finger, ub 98.8 2.1E-09 7.3E-14 75.1 2.1 35 297-331 4-39 (55)
7 2ect_A Ring finger protein 126 98.7 3.4E-09 1.2E-13 79.6 2.8 36 295-330 12-47 (78)
8 2kiz_A E3 ubiquitin-protein li 98.7 2.5E-09 8.6E-14 78.4 2.0 36 295-330 11-46 (69)
9 2ep4_A Ring finger protein 24; 98.7 3.3E-09 1.1E-13 78.8 1.8 35 296-330 13-47 (74)
10 1v87_A Deltex protein 2; ring- 98.5 1.4E-08 4.7E-13 81.7 1.2 35 297-331 24-73 (114)
11 2d8s_A Cellular modulator of i 98.5 2.2E-08 7.4E-13 76.4 1.8 35 296-331 13-52 (80)
12 2ecm_A Ring finger and CHY zin 98.5 2.3E-08 7.8E-13 69.7 1.7 34 297-330 4-38 (55)
13 2ecl_A Ring-box protein 2; RNF 98.5 2.4E-08 8.1E-13 76.0 0.6 33 298-330 15-59 (81)
14 3dpl_R Ring-box protein 1; ubi 98.4 2.7E-08 9.2E-13 79.9 0.0 35 297-331 36-85 (106)
15 3fed_A Glutamate carboxypeptid 98.4 2E-07 6.7E-12 97.3 6.5 99 117-217 124-268 (707)
16 4a0k_B E3 ubiquitin-protein li 98.3 9.7E-08 3.3E-12 77.9 -0.5 35 297-331 47-96 (117)
17 2ea6_A Ring finger protein 4; 98.3 1.4E-07 4.9E-12 68.4 0.4 35 296-330 13-51 (69)
18 3ng2_A RNF4, snurf, ring finge 98.2 1.2E-07 4.2E-12 69.3 -0.2 35 296-330 8-46 (71)
19 3kas_A Transferrin receptor pr 98.2 8.4E-07 2.9E-11 91.6 5.4 95 118-216 106-230 (640)
20 2ct2_A Tripartite motif protei 98.2 4E-07 1.4E-11 69.3 1.9 35 296-330 13-48 (88)
21 2ecn_A Ring finger protein 141 98.2 4.8E-07 1.7E-11 66.2 2.1 31 296-330 13-43 (70)
22 2xeu_A Ring finger protein 4; 98.1 2.3E-07 7.7E-12 66.4 -0.9 34 297-330 2-39 (64)
23 1chc_A Equine herpes virus-1 r 98.1 6.8E-07 2.3E-11 64.9 1.3 32 297-330 4-35 (68)
24 2d8t_A Dactylidin, ring finger 98.1 1.1E-06 3.6E-11 64.7 1.7 32 296-330 13-44 (71)
25 2ecj_A Tripartite motif-contai 98.0 1.2E-06 4.1E-11 61.4 1.0 32 296-330 13-44 (58)
26 3i6s_A Subtilisin-like proteas 97.9 9E-06 3.1E-10 84.1 6.2 92 123-224 260-354 (649)
27 2ysj_A Tripartite motif-contai 97.9 3.2E-06 1.1E-10 60.4 1.7 32 296-330 18-49 (63)
28 2djb_A Polycomb group ring fin 97.9 3.1E-06 1.1E-10 62.3 1.0 33 296-330 13-45 (72)
29 1xf1_A C5A peptidase, SCP; hyd 97.8 5.1E-05 1.7E-09 81.5 9.7 65 146-213 279-343 (926)
30 2csy_A Zinc finger protein 183 97.8 6.4E-06 2.2E-10 61.9 1.9 32 296-330 13-44 (81)
31 2ysl_A Tripartite motif-contai 97.8 7.8E-06 2.7E-10 59.9 1.9 32 296-330 18-49 (73)
32 1bor_A Transcription factor PM 97.7 9E-06 3.1E-10 57.1 1.7 30 297-329 5-34 (56)
33 1y9z_A Alkaline serine proteas 97.7 5.5E-05 1.9E-09 74.5 7.1 71 146-216 272-349 (441)
34 2egp_A Tripartite motif-contai 97.6 1.8E-05 6.1E-10 58.8 2.4 32 296-330 10-41 (79)
35 2yur_A Retinoblastoma-binding 97.6 1.3E-05 4.6E-10 59.3 1.5 32 296-330 13-45 (74)
36 2ecw_A Tripartite motif-contai 97.6 2.6E-05 9E-10 58.4 2.6 30 297-329 18-47 (85)
37 1wim_A KIAA0161 protein; ring 97.6 1.5E-05 5.1E-10 61.8 1.2 33 297-329 4-36 (94)
38 1g25_A CDK-activating kinase a 97.6 1.2E-05 4.1E-10 57.8 0.3 33 297-329 2-36 (65)
39 2ecy_A TNF receptor-associated 97.5 2.7E-05 9.4E-10 56.1 1.9 32 296-330 13-44 (66)
40 2ecv_A Tripartite motif-contai 97.5 3.3E-05 1.1E-09 57.8 2.1 30 297-329 18-47 (85)
41 2ct0_A Non-SMC element 1 homol 97.5 2.4E-05 8.1E-10 58.6 0.9 33 296-330 13-45 (74)
42 4ap4_A E3 ubiquitin ligase RNF 97.5 1.5E-05 5.2E-10 64.7 -0.4 34 297-330 71-108 (133)
43 3lrq_A E3 ubiquitin-protein li 97.5 1.7E-05 5.8E-10 62.3 -0.1 31 298-330 22-52 (100)
44 4ayc_A E3 ubiquitin-protein li 97.4 3.3E-05 1.1E-09 64.1 0.5 29 299-330 54-82 (138)
45 2ckl_B Ubiquitin ligase protei 97.3 3.4E-05 1.2E-09 65.8 0.5 31 298-330 54-84 (165)
46 2ckl_A Polycomb group ring fin 97.3 3.2E-05 1.1E-09 61.3 0.1 32 297-330 14-45 (108)
47 2y43_A E3 ubiquitin-protein li 97.3 4.3E-05 1.5E-09 59.5 0.8 30 298-329 22-51 (99)
48 1e4u_A Transcriptional repress 97.3 5.6E-05 1.9E-09 56.9 1.1 33 296-329 9-43 (78)
49 3k1l_B Fancl; UBC, ring, RWD, 97.2 7.3E-05 2.5E-09 71.2 1.5 37 295-331 305-346 (381)
50 1t1h_A Gspef-atpub14, armadill 97.2 6E-05 2.1E-09 55.9 0.7 32 296-330 6-37 (78)
51 1vyx_A ORF K3, K3RING; zinc-bi 97.2 5.7E-05 1.9E-09 54.1 -0.1 33 296-331 4-41 (60)
52 3l11_A E3 ubiquitin-protein li 97.1 0.00014 4.7E-09 58.2 1.3 32 297-331 14-45 (115)
53 3ztg_A E3 ubiquitin-protein li 97.1 0.00021 7.3E-09 54.6 2.4 31 296-329 11-42 (92)
54 3fl2_A E3 ubiquitin-protein li 97.1 9.1E-05 3.1E-09 60.1 0.2 30 298-330 52-81 (124)
55 1jm7_A BRCA1, breast cancer ty 97.1 0.00015 5.1E-09 57.4 1.4 30 298-330 21-50 (112)
56 3hct_A TNF receptor-associated 96.8 0.00025 8.6E-09 57.1 0.6 31 297-330 17-47 (118)
57 2y1n_A E3 ubiquitin-protein li 96.8 0.00029 9.9E-09 68.3 1.1 31 297-330 331-361 (389)
58 1z6u_A NP95-like ring finger p 96.6 0.00039 1.3E-08 58.6 0.4 30 298-330 78-107 (150)
59 1jm7_B BARD1, BRCA1-associated 96.5 0.00062 2.1E-08 54.7 1.2 31 298-330 22-52 (117)
60 4ic3_A E3 ubiquitin-protein li 96.5 0.001 3.5E-08 49.0 2.1 30 298-330 24-54 (74)
61 2ea5_A Cell growth regulator w 96.4 0.0019 6.7E-08 47.0 3.0 31 296-329 13-44 (68)
62 1rmd_A RAG1; V(D)J recombinati 96.4 0.00065 2.2E-08 54.3 0.4 29 298-329 23-51 (116)
63 2ecg_A Baculoviral IAP repeat- 96.2 0.00088 3E-08 49.5 0.2 28 298-328 25-53 (75)
64 3knv_A TNF receptor-associated 96.0 0.0011 3.7E-08 55.4 -0.1 31 297-330 30-60 (141)
65 2vje_B MDM4 protein; proto-onc 94.5 0.0068 2.3E-07 43.2 0.0 32 297-329 6-38 (63)
66 3t6p_A Baculoviral IAP repeat- 94.4 0.021 7.3E-07 54.5 3.4 30 298-330 295-325 (345)
67 2yu4_A E3 SUMO-protein ligase 94.3 0.014 4.9E-07 44.9 1.5 31 297-330 6-37 (94)
68 2vje_A E3 ubiquitin-protein li 93.9 0.011 3.9E-07 42.2 0.2 31 297-328 7-38 (64)
69 2kr4_A Ubiquitin conjugation f 93.6 0.026 8.9E-07 42.6 1.8 32 296-330 12-43 (85)
70 2yho_A E3 ubiquitin-protein li 93.4 0.029 9.7E-07 41.8 1.8 29 298-329 18-47 (79)
71 2kre_A Ubiquitin conjugation f 93.0 0.032 1.1E-06 43.5 1.5 33 295-330 26-58 (100)
72 1wgm_A Ubiquitin conjugation f 92.1 0.057 1.9E-06 41.9 1.9 32 296-330 20-52 (98)
73 2c2l_A CHIP, carboxy terminus 91.6 0.071 2.4E-06 48.1 2.2 33 295-330 205-237 (281)
74 3htk_C E3 SUMO-protein ligase 90.1 0.086 3E-06 48.3 1.2 32 297-330 180-211 (267)
75 2f42_A STIP1 homology and U-bo 85.7 0.18 6.1E-06 43.6 0.4 33 295-330 103-135 (179)
76 2yt5_A Metal-response element- 85.5 0.48 1.6E-05 33.6 2.6 34 296-329 4-39 (66)
77 2yql_A PHD finger protein 21A; 81.2 1.1 3.7E-05 30.8 2.9 31 296-329 7-37 (56)
78 3vta_A Cucumisin; subtilisin-l 80.9 1.2 4.3E-05 45.3 4.5 60 146-216 280-339 (621)
79 2lri_C Autoimmune regulator; Z 80.2 0.86 2.9E-05 32.7 2.1 29 297-328 11-39 (66)
80 1mm2_A MI2-beta; PHD, zinc fin 78.6 1.1 3.8E-05 31.5 2.3 31 296-329 7-37 (61)
81 2jun_A Midline-1; B-BOX, TRIM, 77.7 0.84 2.9E-05 34.8 1.5 31 298-328 3-33 (101)
82 2ysm_A Myeloid/lymphoid or mix 75.9 1.8 6.1E-05 33.9 3.0 35 296-330 5-39 (111)
83 1wil_A KIAA1045 protein; ring 75.8 0.85 2.9E-05 34.5 1.0 33 295-328 12-44 (89)
84 1xwh_A Autoimmune regulator; P 74.8 1.8 6E-05 30.8 2.5 30 297-329 7-36 (66)
85 2l5u_A Chromodomain-helicase-D 73.1 1.5 5.3E-05 30.7 1.8 33 295-330 8-40 (61)
86 2puy_A PHD finger protein 21A; 72.2 2.1 7.1E-05 29.8 2.3 30 297-329 4-33 (60)
87 2bay_A PRE-mRNA splicing facto 71.8 0.77 2.6E-05 32.2 -0.1 30 299-330 4-33 (61)
88 2e6r_A Jumonji/ARID domain-con 71.7 2.4 8.2E-05 32.3 2.7 33 297-329 15-47 (92)
89 1f62_A Transcription factor WS 70.0 1.5 5.2E-05 29.3 1.1 29 300-328 2-30 (51)
90 3nw0_A Non-structural maintena 69.9 0.97 3.3E-05 40.6 0.1 31 297-329 179-209 (238)
91 4f54_A Uncharacterized protein 69.5 1.6 5.3E-05 38.2 1.4 8 12-19 105-113 (197)
92 1fp0_A KAP-1 corepressor; PHD 69.5 3 0.0001 31.7 2.8 32 295-329 22-53 (88)
93 1we9_A PHD finger family prote 65.9 4.1 0.00014 28.5 2.7 33 297-329 5-38 (64)
94 3v43_A Histone acetyltransfera 64.0 2.4 8E-05 33.4 1.3 31 298-328 5-41 (112)
95 2l43_A N-teminal domain from h 60.9 3.7 0.00013 31.0 1.8 33 297-329 24-58 (88)
96 2ku3_A Bromodomain-containing 59.3 4.6 0.00016 29.2 2.0 34 296-329 14-49 (71)
97 1wev_A Riken cDNA 1110020M19; 57.4 5.3 0.00018 30.1 2.2 32 298-329 16-49 (88)
98 2k16_A Transcription initiatio 57.1 3.4 0.00012 29.9 1.0 33 297-329 17-49 (75)
99 2lv9_A Histone-lysine N-methyl 52.7 9.4 0.00032 29.2 2.9 30 299-329 29-58 (98)
100 2e6s_A E3 ubiquitin-protein li 47.8 9.8 0.00034 27.9 2.3 31 299-329 27-57 (77)
101 1zfo_A LAsp-1; LIM domain, zin 45.7 5.3 0.00018 23.9 0.4 28 299-328 4-31 (31)
102 2dj7_A Actin-binding LIM prote 43.8 19 0.00066 25.9 3.3 30 298-329 15-44 (80)
103 2kwj_A Zinc finger protein DPF 43.7 10 0.00034 29.8 1.9 31 299-329 59-89 (114)
104 4gne_A Histone-lysine N-methyl 43.2 15 0.00053 28.7 2.8 32 296-330 13-46 (107)
105 2vpb_A Hpygo1, pygopus homolog 42.9 8.3 0.00028 27.3 1.1 32 297-328 7-40 (65)
106 3asl_A E3 ubiquitin-protein li 42.3 9.1 0.00031 27.5 1.3 30 300-329 20-49 (70)
107 2co8_A NEDD9 interacting prote 41.4 14 0.00049 26.7 2.3 29 298-328 15-43 (82)
108 1iml_A CRIP, cysteine rich int 40.2 11 0.00039 26.6 1.5 13 299-311 28-40 (76)
109 3kf6_B Protein TEN1; OB fold, 39.4 7.9 0.00027 30.3 0.6 24 307-330 17-40 (105)
110 3v43_A Histone acetyltransfera 39.3 15 0.00051 28.6 2.2 32 298-329 61-93 (112)
111 3ql9_A Transcriptional regulat 39.0 11 0.00037 30.6 1.4 31 296-329 55-85 (129)
112 2cu8_A Cysteine-rich protein 2 38.2 26 0.00089 24.6 3.3 29 298-328 9-37 (76)
113 2ysm_A Myeloid/lymphoid or mix 36.3 16 0.00054 28.3 1.9 31 299-329 55-85 (111)
114 2ks1_B Epidermal growth factor 34.7 31 0.0011 22.6 2.8 6 253-258 32-37 (44)
115 1a7i_A QCRP2 (LIM1); LIM domai 34.6 20 0.00069 25.6 2.2 30 298-329 7-36 (81)
116 2lbm_A Transcriptional regulat 32.9 16 0.00054 30.1 1.5 32 295-329 60-91 (142)
117 3shb_A E3 ubiquitin-protein li 32.3 16 0.00056 26.7 1.3 30 300-329 28-57 (77)
118 2xb1_A Pygopus homolog 2, B-ce 32.0 19 0.00066 27.8 1.8 30 299-328 4-35 (105)
119 1wee_A PHD finger family prote 31.4 27 0.00092 24.8 2.3 31 298-329 16-47 (72)
120 1wep_A PHF8; structural genomi 30.8 28 0.00095 25.2 2.4 30 299-329 13-43 (79)
121 2d8y_A Eplin protein; LIM doma 28.2 39 0.0013 24.7 2.9 30 298-329 15-44 (91)
122 3ask_A E3 ubiquitin-protein li 28.0 26 0.00091 31.0 2.1 31 299-329 175-205 (226)
123 1iko_P Ephrin-B2; greek KEY, g 27.8 18 0.00062 30.9 1.0 10 3-12 105-114 (178)
124 1wem_A Death associated transc 27.0 37 0.0013 24.3 2.5 30 299-329 17-46 (76)
125 3o70_A PHD finger protein 13; 26.2 41 0.0014 23.8 2.5 32 297-329 18-49 (68)
126 2d8x_A Protein pinch; LIM doma 26.0 46 0.0016 22.8 2.8 28 298-328 5-32 (70)
127 2l2t_A Receptor tyrosine-prote 25.9 48 0.0016 21.7 2.6 6 253-258 31-36 (44)
128 2kgg_A Histone demethylase jar 24.0 36 0.0012 22.6 1.8 31 300-330 4-36 (52)
129 2dar_A PDZ and LIM domain prot 23.6 56 0.0019 23.7 3.0 30 297-329 24-53 (90)
130 1x63_A Skeletal muscle LIM-pro 21.6 54 0.0019 23.1 2.5 29 299-328 16-44 (82)
131 2akl_A PHNA-like protein PA012 21.1 33 0.0011 27.9 1.2 28 297-324 26-55 (138)
132 1x61_A Thyroid receptor intera 20.3 64 0.0022 22.1 2.6 29 298-328 5-34 (72)
No 1
>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}
Probab=99.90 E-value=6.9e-24 Score=188.30 Aligned_cols=133 Identities=23% Similarity=0.350 Sum_probs=109.6
Q ss_pred ceeeccccCCCCCcCCCCCeEEEEEeCC---CCCCCCCCCCCCCCC----CCCCCeEEEEEcCC-CCHHHHHHHHHHcCC
Q 020063 101 SLHFPDLPAKFAVDVNSSGTCGALHVAD---PADACSPLSNPVASN----DADHINFVLIVRGQ-CIFEDKIRNAQAAGY 172 (331)
Q Consensus 101 ~~~f~~~~A~FG~~~~~~~~~G~L~~~~---P~~aC~~~~~~~~~~----~~~~~~IvLV~RG~-CsF~~Kv~~Aq~aGA 172 (331)
+.++.+.+|+||.+.+..+++|.|+.+. |.+||++.+.+.... ....++||||+||+ |+|.+|++|||++||
T Consensus 51 t~~~~~e~a~FG~~~p~~~v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA 130 (194)
T 3icu_A 51 TVWELSEEGVYGQDSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGA 130 (194)
T ss_dssp EEEEEEEEEEECTTSCCSCEEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTC
T ss_pred eeeecccccccCCCCCCCCcEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCC
Confidence 3458899999999999999999998864 789999987653211 01248999999999 999999999999999
Q ss_pred cEEEEeccC-CCCcccccccCCCCceEEEEEEeccchHHHHHHhc-CCcceEEEecCCCCCccc
Q 020063 173 RAAIVYNDR-EKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECCIFPESNRGSWS 234 (331)
Q Consensus 173 ~avIV~n~~-~~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~I~p~~~~~~w~ 234 (331)
+||||||+. +++....|..+. ..+||++||++.+|+.|+++++ |.+|+++|..+.++.+|.
T Consensus 131 ~avIIyNn~~~g~~~~~m~~~~-~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvti~vg~~h~pw~ 193 (194)
T 3icu_A 131 SGAVIFNFPGTRNEVIPMSHPG-AVDIVAIMIGNLKGTKILQSIQRGIQVTMVIEVGKKHGPWV 193 (194)
T ss_dssp SEEEEECCTTCTTCCCCCCCTT-CCSSEEEEECHHHHHHHHHHHHTTCCEEEEEEEEEEECCCC
T ss_pred cEEEEEeCCCCCCceeeecCCC-CCceeEEEECHHHHHHHHHHHHCCCeEEEEEECCCccCCCC
Confidence 999999985 333456676543 3579999999999999999986 889999998888888884
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.23 E-value=5.6e-12 Score=98.33 Aligned_cols=59 Identities=20% Similarity=0.400 Sum_probs=51.3
Q ss_pred CCCCChhhhccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 271 SRRLDSKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 271 ~~~l~~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.++++++.+++||.+++...... ..+..+|+|||++|++++.++.|||+|.||..||..
T Consensus 14 ~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~ 72 (91)
T 2l0b_A 14 NPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSI 72 (91)
T ss_dssp CCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHH
T ss_pred CCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHH
Confidence 67899999999999999874432 345679999999999999999999999999999864
No 3
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=9.8e-12 Score=93.14 Aligned_cols=53 Identities=23% Similarity=0.459 Sum_probs=44.6
Q ss_pred hhhhccCCeEEEccCCCCCCCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 276 SKVVEALPCFLFSSASSSQCHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 276 ~~~i~~LP~~~y~~~~~~~~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...+++||..+|+..+. ..+..+|+||+++|++++.++.|||+|.||..||..
T Consensus 3 ~~~i~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~ 55 (75)
T 1x4j_A 3 SGSSGQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDK 55 (75)
T ss_dssp CCCCSSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHH
T ss_pred HhhHhhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHH
Confidence 34678999999976432 335679999999999999999999999999999864
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=98.89 E-value=1.1e-08 Score=100.52 Aligned_cols=92 Identities=24% Similarity=0.323 Sum_probs=68.0
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCc
Q 020063 117 SSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGV 196 (331)
Q Consensus 117 ~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i 196 (331)
..+++|.|+...-. ..+.... ...++|||||+||+|+|.+|+++|+++||+||||||+.+. ....+.++....
T Consensus 90 ~g~v~a~lv~~~~G-~~~D~~~-----~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~-~~~g~~~~~~~~ 162 (421)
T 2ek8_A 90 NSDVTAELVYVGLG-TTADVAG-----KDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDG-KLNGTLGGSDAS 162 (421)
T ss_dssp CEEEEEEEEECTTC-CTTTTTT-----SCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSS-CCCCBCSSCCTT
T ss_pred CCCcceEEEECCCC-ChhhcCC-----CCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCc-ccccccCCCCCC
Confidence 34678888775432 1111111 1246999999999999999999999999999999998743 233222333456
Q ss_pred eEEEEEEeccchHHHHHHh
Q 020063 197 KVHAIFVSLETGVYLKEHA 215 (331)
Q Consensus 197 ~IP~v~Is~~~G~~L~~~l 215 (331)
.||++.|+.++++.|.+.+
T Consensus 163 ~IP~~~Is~~~a~~L~~~l 181 (421)
T 2ek8_A 163 FVAAVGITKQEGDALAANL 181 (421)
T ss_dssp CCEEEEECHHHHHHHHHHH
T ss_pred CccEEEeCHHHHHHHHHHh
Confidence 8999999999999998887
No 5
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=98.88 E-value=6.8e-09 Score=102.83 Aligned_cols=116 Identities=8% Similarity=-0.051 Sum_probs=79.9
Q ss_pred eeccccCCCCCcCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCC---------HHHH----HHHHHH
Q 020063 103 HFPDLPAKFAVDVNSSGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCI---------FEDK----IRNAQA 169 (331)
Q Consensus 103 ~f~~~~A~FG~~~~~~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~Cs---------F~~K----v~~Aq~ 169 (331)
++...+..+++..+..+++|.|+..+..+.|..... ...+||||||.|+.|. |..| +.+|++
T Consensus 89 ~~~~~~l~~s~~tp~~~vta~lV~v~~~~~~~~~~~-----~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~ 163 (444)
T 3iib_A 89 PLVVTALGGSIATPAQGLSATIVRFDTLQDLQNAEA-----GSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAE 163 (444)
T ss_dssp EECEEECBTCCCCCTTCEEEEEEEESSHHHHHTSCT-----TTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeccCCCCCCCCCeEEEEEecCCHHHHhhccc-----cccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHH
Confidence 344444445555567789999998876555544321 1246999999999995 6666 457999
Q ss_pred cCCcEEEEeccCCCCc---cc-ccccCCCCceEEEEEEeccchHHHHHHhc-CCcceEE
Q 020063 170 AGYRAAIVYNDREKGS---LV-SMTASHEGVKVHAIFVSLETGVYLKEHAR-GETGECC 223 (331)
Q Consensus 170 aGA~avIV~n~~~~~~---~~-~m~~~~~~i~IP~v~Is~~~G~~L~~~l~-~~~v~v~ 223 (331)
+||+|+||+|+.+... .. .|........||++.|+..+|+.|+++++ +.++++.
T Consensus 164 aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~~~~v~ 222 (444)
T 3iib_A 164 KGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDKEVVIS 222 (444)
T ss_dssp TTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTCCCEEE
T ss_pred CCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCCCeEEE
Confidence 9999999999764221 11 12222234689999999999999998886 4444433
No 6
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.76 E-value=2.1e-09 Score=75.13 Aligned_cols=35 Identities=34% Similarity=0.792 Sum_probs=31.8
Q ss_pred CCccccccccccCCCceEEEec-CCCccCccccccC
Q 020063 297 GGETCAICLEDYQDGEKLKVLS-CKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl~~~ 331 (331)
+..+|+||+++|++++.++.+| |+|.||..||..|
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHT
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHH
Confidence 4679999999999999999999 9999999998644
No 7
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.74 E-value=3.4e-09 Score=79.56 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=32.3
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
..+..+|+||+++|.+++.+++|||+|.||..||..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~ 47 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVP 47 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHH
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHH
Confidence 345679999999999999999999999999999864
No 8
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.74 E-value=2.5e-09 Score=78.38 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=32.2
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.....+|+||+++|++++.++.|||+|.||..||..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~ 46 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQ 46 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHH
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHH
Confidence 345679999999999999999999999999999864
No 9
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=3.3e-09 Score=78.79 Aligned_cols=35 Identities=34% Similarity=0.660 Sum_probs=31.8
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
....+|+||+++|++++.+++|||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~ 47 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIK 47 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHH
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHH
Confidence 35679999999999999999999999999999854
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.55 E-value=1.4e-08 Score=81.73 Aligned_cols=35 Identities=29% Similarity=0.540 Sum_probs=29.1
Q ss_pred CCccccccccccCCCc---------------eEEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDGE---------------KLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~gd---------------~vRvLPC~H~FH~~Cl~~~ 331 (331)
..++|+|||++|.+++ .++.+||+|.||..||..|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~w 73 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAM 73 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHH
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHH
Confidence 3469999999998764 5678999999999998643
No 11
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=2.2e-08 Score=76.38 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=30.3
Q ss_pred CCCccccccccccCCCceEEEecCC-----CccCccccccC
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCK-----HGRFLLLLVLF 331 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~-----H~FH~~Cl~~~ 331 (331)
.++++|+|||++|++++.+ ++||+ |.||..||-.|
T Consensus 13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~W 52 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQW 52 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHH
T ss_pred CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHH
Confidence 4567999999999999887 69997 99999999654
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.52 E-value=2.3e-08 Score=69.71 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=29.4
Q ss_pred CCccccccccccCCCc-eEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGE-KLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd-~vRvLPC~H~FH~~Cl~~ 330 (331)
+..+|+||+++|.+++ .++.+||+|.||..||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 38 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEE 38 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHH
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHH
Confidence 5679999999997764 688999999999999853
No 13
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=2.4e-08 Score=75.98 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=25.6
Q ss_pred CccccccccccC-----------CCceEEEec-CCCccCcccccc
Q 020063 298 GETCAICLEDYQ-----------DGEKLKVLS-CKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~-----------~gd~vRvLP-C~H~FH~~Cl~~ 330 (331)
+++|+||+++|+ .++.++++| |+|.||..||-.
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~ 59 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSL 59 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHH
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHH
Confidence 456777777764 567788887 999999999864
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.43 E-value=2.7e-08 Score=79.86 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCccccccccccCCC-------------c--eEEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDG-------------E--KLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~g-------------d--~vRvLPC~H~FH~~Cl~~~ 331 (331)
+.++|+||+++|++. | .++.+||+|.||..||..|
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W 85 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 85 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH
Confidence 457899999999865 2 4788899999999999653
No 15
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=98.43 E-value=2e-07 Score=97.28 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=67.4
Q ss_pred CCCeEEEEEeCCCCCCCCCCCCCCC--CCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCC----C------
Q 020063 117 SSGTCGALHVADPADACSPLSNPVA--SNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREK----G------ 184 (331)
Q Consensus 117 ~~~~~G~L~~~~P~~aC~~~~~~~~--~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~----~------ 184 (331)
...++|.|+.++ .||...-.... .+....|+||||+||+|+|.+|+++||++||+||||||+..+ +
T Consensus 124 ~G~v~g~lV~v~--~G~~~Df~~L~~~~~~~v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~dp~d~~~~g~~~yP~ 201 (707)
T 3fed_A 124 QGMPEGDLVYVN--YARTEDFFKLEREMGINCTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSDPADYFAPEVQPYPK 201 (707)
T ss_dssp CBCCEECEEECT--TCCHHHHHHHHHTSCCCCTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECCHHHHCCTTCCBTTT
T ss_pred CCceEEEEEEec--CCchhhHHHHHhccCCCCCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcCchhccccccccCCC
Confidence 346899999885 56521100000 012346999999999999999999999999999999997321 0
Q ss_pred ------------ccccc--ccCC--------------------CCceEEEEEEeccchHHHHHHhcC
Q 020063 185 ------------SLVSM--TASH--------------------EGVKVHAIFVSLETGVYLKEHARG 217 (331)
Q Consensus 185 ------------~~~~m--~~~~--------------------~~i~IP~v~Is~~~G~~L~~~l~~ 217 (331)
.+..+ .+|+ ....||++-|+..+++.|.+.+++
T Consensus 202 ~~~~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g 268 (707)
T 3fed_A 202 GWNLPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGG 268 (707)
T ss_dssp SSBCCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCB
T ss_pred CccCCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcC
Confidence 00000 0111 125899999999999999888753
No 16
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.26 E-value=9.7e-08 Score=77.92 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=0.9
Q ss_pred CCccccccccccCC-------------Cce--EEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQD-------------GEK--LKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~-------------gd~--vRvLPC~H~FH~~Cl~~~ 331 (331)
..+.|+||+++|++ +|. +..+||+|.||..||..|
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~W 96 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW 96 (117)
T ss_dssp CC------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHH
Confidence 35799999999986 443 333579999999999765
No 17
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=1.4e-07 Score=68.43 Aligned_cols=35 Identities=26% Similarity=0.518 Sum_probs=29.4
Q ss_pred CCCccccccccccCC----CceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQD----GEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~----gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||+++|++ ++.+..+||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 51 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 51 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHH
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHH
Confidence 356799999999986 45678899999999999853
No 18
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.24 E-value=1.2e-07 Score=69.35 Aligned_cols=35 Identities=26% Similarity=0.518 Sum_probs=29.7
Q ss_pred CCCccccccccccCC----CceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQD----GEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~----gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||+++|.+ ++.+..+||+|.||..||..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 46 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 46 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHH
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHH
Confidence 356799999999976 46788999999999999853
No 19
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=98.22 E-value=8.4e-07 Score=91.61 Aligned_cols=95 Identities=17% Similarity=0.172 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCccc-------c--
Q 020063 118 SGTCGALHVADPADACSPLSNPVASNDADHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLV-------S-- 188 (331)
Q Consensus 118 ~~~~G~L~~~~P~~aC~~~~~~~~~~~~~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~-------~-- 188 (331)
..++|.|+.+. .||...-.... ...+||||||+||+|+|.+|+++|+++||+||||||+..+.... .
T Consensus 106 g~v~g~lV~vg--~G~~~D~~~l~--vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~ 181 (640)
T 3kas_A 106 ATVTGKLVHAN--FGTKKDFEDLY--TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHA 181 (640)
T ss_dssp EEEEECEEECT--TCCHHHHHTCS--SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEEC
T ss_pred CceEEEEEEec--CCChhhHHHhh--cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEecccccccccccccccccc
Confidence 35788888874 45532100000 12469999999999999999999999999999999986421110 0
Q ss_pred -c-ccC-------------------CCCceEEEEEEeccchHHHHHHhc
Q 020063 189 -M-TAS-------------------HEGVKVHAIFVSLETGVYLKEHAR 216 (331)
Q Consensus 189 -m-~~~-------------------~~~i~IP~v~Is~~~G~~L~~~l~ 216 (331)
. .+| .....||++-|+..+++.|.+.+.
T Consensus 182 ~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 182 HLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 0 011 012479999999999999987754
No 20
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=4e-07 Score=69.32 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=30.4
Q ss_pred CCCccccccccccCCCce-EEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEK-LKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~-vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|.+++. .+.|||+|.||..|+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~ 48 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEK 48 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHH
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHH
Confidence 356799999999999885 78899999999999853
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=4.8e-07 Score=66.16 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=27.0
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|.+ ..+||+|.||..|+..
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~ 43 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDK 43 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHH
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHH
Confidence 356799999999987 7899999999999864
No 22
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.12 E-value=2.3e-07 Score=66.35 Aligned_cols=34 Identities=24% Similarity=0.452 Sum_probs=28.8
Q ss_pred CCccccccccccCC----CceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQD----GEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~----gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+..+|+||+++|++ ++.+..+||+|.||..|+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 39 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 39 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHH
Confidence 45799999999986 36778899999999999853
No 23
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.10 E-value=6.8e-07 Score=64.90 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=27.0
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...+|+||++++++ ....+||+|.||..|+..
T Consensus 4 ~~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~ 35 (68)
T 1chc_A 4 VAERCPICLEDPSN--YSMALPCLHAFCYVCITR 35 (68)
T ss_dssp CCCCCSSCCSCCCS--CEEETTTTEEESTTHHHH
T ss_pred CCCCCeeCCccccC--CcEecCCCCeeHHHHHHH
Confidence 46799999999874 458899999999999853
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=1.1e-06 Score=64.69 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=26.5
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|++. ..+||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~ 44 (71)
T 2d8t_A 13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKG 44 (71)
T ss_dssp SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHH
T ss_pred CCCCCCccCCcccCCC---EEccCCCHHHHHHHHH
Confidence 3567999999998763 5679999999999864
No 25
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=1.2e-06 Score=61.39 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=26.6
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+...|+||++.|++. ..|||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~ 44 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIECGHNFCKACITR 44 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHH
T ss_pred ccCCCCccCCcccCcc---EeCCCCCccCHHHHHH
Confidence 3567999999999875 3489999999999853
No 26
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Probab=97.92 E-value=9e-06 Score=84.13 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=68.5
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCCC--CCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCceEEE
Q 020063 123 ALHVADPADACSPLSNPVASNDAD--HINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHA 200 (331)
Q Consensus 123 ~L~~~~P~~aC~~~~~~~~~~~~~--~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~ 200 (331)
.|+.+.+.+.|.+...+. ... .++|+|++||.|+|.+|..+++++||.++|++|+.. .. . .....+|+
T Consensus 260 plv~~~~~~~C~~~~l~~---~~vdl~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~--~~---~--~~~~~~P~ 329 (649)
T 3i6s_A 260 PVIYNKTLSDCSSEELLS---QVENPENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPG--VF---R--SATFPNPG 329 (649)
T ss_dssp EEECCTTTTTCCCHHHHT---TSSSGGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGG--GG---G--CCCCCSCE
T ss_pred eeEecccccccccccccc---cccccCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCcc--cc---c--cccCcCCE
Confidence 445555567898753321 123 699999999999999999999999999999999862 11 1 12347899
Q ss_pred EEEeccchHHHHHHhc-CCcceEEE
Q 020063 201 IFVSLETGVYLKEHAR-GETGECCI 224 (331)
Q Consensus 201 v~Is~~~G~~L~~~l~-~~~v~v~I 224 (331)
++|+.++|+.|+++++ +...+..|
T Consensus 330 ~~v~~~~g~~i~~yi~s~~~~~a~i 354 (649)
T 3i6s_A 330 VVVNKKEGKQVINYVKNSVTPTATI 354 (649)
T ss_dssp EEECHHHHHHHHHHHHTCSSCEEEE
T ss_pred EEEcHHHHHHHHHHHhcCCCceEEE
Confidence 9999999999999986 34333333
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=3.2e-06 Score=60.42 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|++ -.+|||+|.||..||..
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~ 49 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQ 49 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHH
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHH
Confidence 346799999999985 34569999999999853
No 28
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=3.1e-06 Score=62.31 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=26.7
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|++ .+.++||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~ 45 (72)
T 2djb_A 13 TPYILCSICKGYLID--ATTITECLHTFCKSCIVR 45 (72)
T ss_dssp CGGGSCTTTSSCCSS--CEECSSSCCEECHHHHHH
T ss_pred CCCCCCCCCChHHHC--cCEECCCCCHHHHHHHHH
Confidence 346799999999986 455558999999999853
No 29
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*
Probab=97.80 E-value=5.1e-05 Score=81.48 Aligned_cols=65 Identities=31% Similarity=0.501 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCceEEEEEEeccchHHHHH
Q 020063 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKE 213 (331)
Q Consensus 146 ~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~ 213 (331)
..++|||++||.|+|.+|+.+|+++||.++|++|+..+.....+ .....||+++|+..+|+.|+.
T Consensus 279 v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~---~~~~~iP~~~i~~~~g~~l~~ 343 (926)
T 1xf1_A 279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIEL---PNVDQMPAAFISRKDGLLLKD 343 (926)
T ss_dssp CTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEEC---CCSTTCCEEEECHHHHHHHHH
T ss_pred cCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCccccc---CccccccEEEEeHHHHHHHHh
Confidence 45999999999999999999999999999999998754322222 223478999999999998875
No 30
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=6.4e-06 Score=61.94 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=26.0
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|.+ . .++||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~--p-~~~~CgH~fC~~Ci~~ 44 (81)
T 2csy_A 13 EIPFRCFICRQAFQN--P-VVTKCRHYFCESCALE 44 (81)
T ss_dssp CCCSBCSSSCSBCCS--E-EECTTSCEEEHHHHHH
T ss_pred CCCCCCcCCCchhcC--e-eEccCCCHhHHHHHHH
Confidence 345689999999966 2 3689999999999853
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=7.8e-06 Score=59.93 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=26.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|++ -..+||+|.||..||..
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~ 49 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQ 49 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHH
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHH
Confidence 346799999999985 44569999999999853
No 32
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.73 E-value=9e-06 Score=57.09 Aligned_cols=30 Identities=23% Similarity=0.247 Sum_probs=25.9
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+...|+||++.|++- +.|||+|.|+..|+.
T Consensus 5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~ 34 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLE 34 (56)
T ss_dssp CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCS
T ss_pred cCCCceEeCCccCCe---EEcCCCCcccHHHHc
Confidence 567899999999863 678999999999984
No 33
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Probab=97.68 E-value=5.5e-05 Score=74.45 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=55.8
Q ss_pred CCCeEEEEEcCCC-----CHHHHHHHHHHcCCcEEEEeccCCCCccc--ccccCCCCceEEEEEEeccchHHHHHHhc
Q 020063 146 DHINFVLIVRGQC-----IFEDKIRNAQAAGYRAAIVYNDREKGSLV--SMTASHEGVKVHAIFVSLETGVYLKEHAR 216 (331)
Q Consensus 146 ~~~~IvLV~RG~C-----sF~~Kv~~Aq~aGA~avIV~n~~~~~~~~--~m~~~~~~i~IP~v~Is~~~G~~L~~~l~ 216 (331)
..++|+|++||.| +|.+|+.+++++||.++|+||+.+..... ..........||+++|+.++|+.|++++.
T Consensus 272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~ 349 (441)
T 1y9z_A 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLG 349 (441)
T ss_dssp CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTT
T ss_pred ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhc
Confidence 4599999999987 89999999999999999999986432211 11122234589999999999999998774
No 34
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=97.65 E-value=1.8e-05 Score=58.82 Aligned_cols=32 Identities=28% Similarity=0.491 Sum_probs=26.4
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|++- ..|||+|.||..||..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~ 41 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLDCGHSLCRACITV 41 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCSSSCCCCHHHHSC
T ss_pred ccCCCCcCCCcccCCe---eECCCCCHHHHHHHHH
Confidence 3567999999999763 3479999999999864
No 35
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.63 E-value=1.3e-05 Score=59.26 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=26.2
Q ss_pred CCCccccccccccCCCceEEEec-CCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLS-CKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl~~ 330 (331)
.+...|+||++.|++- ..+| |+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~ 45 (74)
T 2yur_A 13 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRT 45 (74)
T ss_dssp CGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHH
T ss_pred CCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHH
Confidence 3457999999999863 3489 999999999854
No 36
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.59 E-value=2.6e-05 Score=58.39 Aligned_cols=30 Identities=27% Similarity=0.462 Sum_probs=25.6
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+..+|+||++.|.+.. ++||+|.||..||.
T Consensus 18 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~ 47 (85)
T 2ecw_A 18 EEVTCPICLELLKEPV---SADCNHSFCRACIT 47 (85)
T ss_dssp TTTSCTTTCSCCSSCE---ECTTSCCBCHHHHH
T ss_pred cCCCCcCCChhhCcce---eCCCCCHHHHHHHH
Confidence 4579999999997643 68999999999985
No 37
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.59 E-value=1.5e-05 Score=61.79 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=29.6
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+..+|.||+++|...+.++..+|+|.|.+.|+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~ 36 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLK 36 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHH
Confidence 457899999999988888888999999999974
No 38
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.56 E-value=1.2e-05 Score=57.80 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.6
Q ss_pred CCcccccccc-ccCCCce-EEEecCCCccCccccc
Q 020063 297 GGETCAICLE-DYQDGEK-LKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLe-df~~gd~-vRvLPC~H~FH~~Cl~ 329 (331)
++.+|+||++ .|.+... +..+||+|.||..||-
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~ 36 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVD 36 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHH
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHH
Confidence 3578999999 7877654 3567899999999984
No 39
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=2.7e-05 Score=56.06 Aligned_cols=32 Identities=13% Similarity=0.157 Sum_probs=26.3
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+..+|+||++.|++.-. +||+|.||..||..
T Consensus 13 ~~~~~C~IC~~~~~~p~~---~~CgH~fC~~Ci~~ 44 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQ---TECGHRFCESCMAA 44 (66)
T ss_dssp CCCEECTTTCCEESSCCC---CSSSCCCCHHHHHH
T ss_pred CcCCCCCCCChHhcCeeE---CCCCCHHHHHHHHH
Confidence 346799999999986543 79999999999853
No 40
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=3.3e-05 Score=57.81 Aligned_cols=30 Identities=33% Similarity=0.480 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+..+|+||++.|++- ..+||+|.||..|+.
T Consensus 18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~ 47 (85)
T 2ecv_A 18 EEVTCPICLELLTQP---LSLDCGHSFCQACLT 47 (85)
T ss_dssp CCCCCTTTCSCCSSC---BCCSSSCCBCTTHHH
T ss_pred CCCCCCCCCcccCCc---eeCCCCCHHHHHHHH
Confidence 457999999999763 357999999999985
No 41
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=2.4e-05 Score=58.56 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=27.9
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+..++|+||.+.+.+|++.. .|+|.||..||-.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~k 45 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCE--TCGIRMHLPCVAK 45 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECS--SSCCEECHHHHHH
T ss_pred CCCCcCcchhhHcccCCccC--CCCchhhHHHHHH
Confidence 35689999999999987554 8999999999854
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.46 E-value=1.5e-05 Score=64.71 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=28.6
Q ss_pred CCccccccccccCC----CceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQD----GEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~----gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+..+|+||+++|++ ++....++|+|.||..||..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~ 108 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRD 108 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHH
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHH
Confidence 46789999999987 35567888999999999854
No 43
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.45 E-value=1.7e-05 Score=62.30 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=25.7
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+||++.|++ .+..++|+|.||..||..
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~ 52 (100)
T 3lrq_A 22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRR 52 (100)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHH
T ss_pred CCCCccCCccccC--ccccCCCCChhhHHHHHH
Confidence 4689999999974 555589999999999853
No 44
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=97.36 E-value=3.3e-05 Score=64.12 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=24.8
Q ss_pred ccccccccccCCCceEEEecCCCccCcccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+|+||++.|.+ ...+||+|.||..||..
T Consensus 54 ~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~ 82 (138)
T 4ayc_A 54 LQCIICSEYFIE---AVTLNCAHSFCSYCINE 82 (138)
T ss_dssp SBCTTTCSBCSS---EEEETTSCEEEHHHHHH
T ss_pred CCCcccCcccCC---ceECCCCCCccHHHHHH
Confidence 479999999976 45789999999999853
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.35 E-value=3.4e-05 Score=65.80 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=26.2
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+||++.|.+ .+..+||+|.||..||..
T Consensus 54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~ 84 (165)
T 2ckl_B 54 ELMCPICLDMLKN--TMTTKECLHRFCADCIIT 84 (165)
T ss_dssp HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHH
T ss_pred CCCCcccChHhhC--cCEeCCCCChhHHHHHHH
Confidence 4589999999986 566669999999999853
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.33 E-value=3.2e-05 Score=61.33 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.4
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+...|+||++.|.+ .+..+||+|.||..||..
T Consensus 14 ~~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~ 45 (108)
T 2ckl_A 14 PHLMCVLCGGYFID--ATTIIECLHSFCKTCIVR 45 (108)
T ss_dssp GGTBCTTTSSBCSS--EEEETTTCCEEEHHHHHH
T ss_pred CcCCCccCChHHhC--cCEeCCCCChhhHHHHHH
Confidence 45799999999975 566669999999999853
No 47
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.32 E-value=4.3e-05 Score=59.54 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=24.6
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..+|+||++.|.+ .+..+||+|.||..|+.
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~ 51 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIR 51 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHH
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHH
Confidence 4689999999986 34445899999999985
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.30 E-value=5.6e-05 Score=56.94 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=25.9
Q ss_pred CCCccccccccccCCCceEEEec--CCCccCccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLS--CKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLP--C~H~FH~~Cl~ 329 (331)
.++.+|+||||.+...|. +.+| |+|.|+..|+.
T Consensus 9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~ 43 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWH 43 (78)
T ss_dssp CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHH
T ss_pred ccCCcCCccCccCccccc-cccccCCCCCcCHHHHH
Confidence 356799999999976553 3455 99999999985
No 49
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.25 E-value=7.3e-05 Score=71.21 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=28.4
Q ss_pred CCCCccccccccccCCCceEE-----EecCCCccCccccccC
Q 020063 295 CHGGETCAICLEDYQDGEKLK-----VLSCKHGRFLLLLVLF 331 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vR-----vLPC~H~FH~~Cl~~~ 331 (331)
.....+|+||++.+.+++.+- -.+|+|.||..||..|
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kW 346 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEW 346 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHH
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHH
Confidence 345789999999999854432 2359999999999654
No 50
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.23 E-value=6e-05 Score=55.95 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=26.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+...|+||++.|++- .++||+|.|++.||..
T Consensus 6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~ 37 (78)
T 1t1h_A 6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQK 37 (78)
T ss_dssp SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHH
T ss_pred cccCCCCCccccccCC---EEcCCCCeecHHHHHH
Confidence 4567999999999763 3469999999999853
No 51
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.17 E-value=5.7e-05 Score=54.08 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=25.2
Q ss_pred CCCccccccccccCCCceEEEecCC--C---ccCccccccC
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCK--H---GRFLLLLVLF 331 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~--H---~FH~~Cl~~~ 331 (331)
++...|.||+++ .++.+ ++||+ | .||..||..|
T Consensus 4 ~~~~~CrIC~~~--~~~~l-~~PC~C~gs~~~~H~~Cl~~W 41 (60)
T 1vyx_A 4 EDVPVCWICNEE--LGNER-FRACGCTGELENVHRSCLSTW 41 (60)
T ss_dssp CSCCEETTTTEE--CSCCC-CCSCCCSSGGGSCCHHHHHHH
T ss_pred CCCCEeEEeecC--CCCce-ecCcCCCCchhhhHHHHHHHH
Confidence 356899999998 34555 69954 5 9999999654
No 52
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.08 E-value=0.00014 Score=58.21 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccccC
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVLF 331 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~~ 331 (331)
+...|+||++.|.+ -..|||+|.||..||..|
T Consensus 14 ~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~ 45 (115)
T 3l11_A 14 SECQCGICMEILVE---PVTLPCNHTLCKPCFQST 45 (115)
T ss_dssp HHHBCTTTCSBCSS---CEECTTSCEECHHHHCCC
T ss_pred CCCCCccCCcccCc---eeEcCCCCHHhHHHHHHH
Confidence 34689999999975 345699999999998643
No 53
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.07 E-value=0.00021 Score=54.61 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCCccccccccccCCCceEEEec-CCCccCccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLS-CKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl~ 329 (331)
.+...|+||++.|.+- ..|| |+|.|+..||.
T Consensus 11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~ 42 (92)
T 3ztg_A 11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIR 42 (92)
T ss_dssp CTTTEETTTTEECSSC---EECTTTCCEECHHHHH
T ss_pred CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHH
Confidence 4567999999999853 4689 99999999985
No 54
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.07 E-value=9.1e-05 Score=60.14 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=24.9
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+||++.|.+ -..+||+|.||..||..
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~ 81 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDR 81 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHH
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHH
Confidence 4689999999985 34579999999999853
No 55
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.06 E-value=0.00015 Score=57.38 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=24.7
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
..+|+||++.|++-- .+||+|.||..||..
T Consensus 21 ~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~ 50 (112)
T 1jm7_A 21 ILECPICLELIKEPV---STKCDHIFCKFCMLK 50 (112)
T ss_dssp HTSCSSSCCCCSSCC---BCTTSCCCCSHHHHH
T ss_pred CCCCcccChhhcCeE---ECCCCCHHHHHHHHH
Confidence 458999999997643 379999999999853
No 56
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.79 E-value=0.00025 Score=57.08 Aligned_cols=31 Identities=19% Similarity=0.394 Sum_probs=25.8
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+...|+||++.|.+- ..+||+|.|+..||..
T Consensus 17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~ 47 (118)
T 3hct_A 17 SKYECPICLMALREA---VQTPCGHRFCKACIIK 47 (118)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHH
T ss_pred CCCCCCcCChhhcCe---EECCcCChhhHHHHHH
Confidence 457999999999864 4579999999999853
No 57
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=96.78 E-value=0.00029 Score=68.33 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=26.1
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...+|+||++.+++ ...+||+|.||..|+..
T Consensus 331 ~~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~ 361 (389)
T 2y1n_A 331 TFQLCKICAENDKD---VKIEPCGHLMCTSCLTS 361 (389)
T ss_dssp SSSBCTTTSSSBCC---EEEETTCCEECHHHHHH
T ss_pred CCCCCCccCcCCCC---eEEeCCCChhhHHHHHH
Confidence 34799999999865 67899999999999853
No 58
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.59 E-value=0.00039 Score=58.64 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=24.7
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+||++.|.+- .++||+|.||..||..
T Consensus 78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~ 107 (150)
T 1z6u_A 78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQR 107 (150)
T ss_dssp HTBCTTTSSBCSSE---EECTTSCEEEHHHHHH
T ss_pred CCEeecCChhhcCC---EEcCCCCchhHHHHHH
Confidence 46899999999763 3489999999999853
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.53 E-value=0.00062 Score=54.65 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=24.7
Q ss_pred CccccccccccCCCceEEEecCCCccCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
...|+||++.|.+- +...||+|.|+..||..
T Consensus 22 ~~~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~ 52 (117)
T 1jm7_B 22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSD 52 (117)
T ss_dssp TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGG
T ss_pred CCCCCCCChHhhCc--cEeCCCCCHHHHHHHHH
Confidence 46899999999753 33338999999999964
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=96.49 E-value=0.001 Score=49.04 Aligned_cols=30 Identities=17% Similarity=0.359 Sum_probs=25.0
Q ss_pred CccccccccccCCCceEEEecCCCc-cCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHG-RFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl~~ 330 (331)
...|.||++.+.+ ...+||+|. |...|+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~ 54 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA 54 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTT
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhc
Confidence 4689999998765 557899999 99999854
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.37 E-value=0.0019 Score=46.96 Aligned_cols=31 Identities=16% Similarity=0.398 Sum_probs=25.5
Q ss_pred CCCccccccccccCCCceEEEecCCCc-cCccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHG-RFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl~ 329 (331)
.+..+|.||++.+.+ +..|||+|. |-..|+.
T Consensus 13 ~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHH
T ss_pred CCCCCCCCcCcCCCC---EEEECCCChhhhHHHHh
Confidence 346799999998765 778999999 9998863
No 62
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=96.37 E-value=0.00065 Score=54.27 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=24.2
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|+||++.|.+ .+ .+||+|.||..||.
T Consensus 23 ~~~C~IC~~~~~~--p~-~~~CgH~fC~~Ci~ 51 (116)
T 1rmd_A 23 SISCQICEHILAD--PV-ETSCKHLFCRICIL 51 (116)
T ss_dssp HTBCTTTCSBCSS--EE-ECTTSCEEEHHHHH
T ss_pred CCCCCCCCcHhcC--cE-EcCCCCcccHHHHH
Confidence 4689999999975 33 38999999999985
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.19 E-value=0.00088 Score=49.47 Aligned_cols=28 Identities=18% Similarity=0.421 Sum_probs=23.6
Q ss_pred CccccccccccCCCceEEEecCCCc-cCcccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHG-RFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl 328 (331)
..+|.||++.+++ ...+||+|. |...|+
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~ 53 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCA 53 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHH
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHh
Confidence 4589999999866 456899999 999986
No 64
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=95.99 E-value=0.0011 Score=55.37 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=25.8
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
+...|+||++.|++- ..++|+|.|+..||..
T Consensus 30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~ 60 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLAS 60 (141)
T ss_dssp GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHH
T ss_pred cCcCCCCCChhhcCc---EECCCCCccCHHHHHH
Confidence 457999999999875 3479999999999853
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=94.45 E-value=0.0068 Score=43.20 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=22.8
Q ss_pred CCccccccccccCCCceEEEecCCCc-cCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHG-RFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl~ 329 (331)
...+|.||++.+++-- +-.+||+|. |-..|+.
T Consensus 6 ~~~~C~IC~~~~~~~~-~~~~pCgH~~~C~~C~~ 38 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGN-IIHGRTGHLVTCFHCAR 38 (63)
T ss_dssp GGSBCTTTSSSBSCEE-EEETTEEEEEECHHHHH
T ss_pred cCCCCcccCCcCCCeE-EEecCCCCHhHHHHHHH
Confidence 4579999999865522 223499998 8887763
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=94.41 E-value=0.021 Score=54.45 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=25.3
Q ss_pred CccccccccccCCCceEEEecCCCc-cCcccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHG-RFLLLLVL 330 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl~~ 330 (331)
...|+||++.+.+ ...|||+|. |...|+-.
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~ 325 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPS 325 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGG
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhc
Confidence 4689999999865 566799999 99999853
No 67
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.29 E-value=0.014 Score=44.87 Aligned_cols=31 Identities=29% Similarity=0.367 Sum_probs=25.3
Q ss_pred CCccccccccccCCCceEEEec-CCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLS-CKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLP-C~H~FH~~Cl~~ 330 (331)
..-.|+||++-|++ -|. +| |+|.|-+.||..
T Consensus 6 ~~~~CPI~~~~~~d--PV~-~~~cGh~f~r~cI~~ 37 (94)
T 2yu4_A 6 SGFTCPITKEEMKK--PVK-NKVCGHTYEEDAIVR 37 (94)
T ss_dssp SCCBCTTTCSBCSS--EEE-ESSSCCEEEHHHHHH
T ss_pred cEeECcCcCchhcC--CEE-cCCCCCeecHHHHHH
Confidence 46789999999885 554 55 999999999864
No 68
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=93.89 E-value=0.011 Score=42.18 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=21.3
Q ss_pred CCccccccccccCCCceEEEecCCCcc-Ccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGR-FLLLL 328 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~F-H~~Cl 328 (331)
+..+|.||++++++. .+..+||+|.+ =.+|+
T Consensus 7 ~~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~ 38 (64)
T 2vje_A 7 AIEPCVICQGRPKNG-CIVHGKTGHLMACFTCA 38 (64)
T ss_dssp GGSCCTTTSSSCSCE-EEEETTEEEEEECHHHH
T ss_pred CcCCCCcCCCCCCCE-EEECCCCCChhhHHHHH
Confidence 457999999986653 11134999995 45665
No 69
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=93.62 E-value=0.026 Score=42.60 Aligned_cols=32 Identities=6% Similarity=-0.226 Sum_probs=26.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.++-.|+||++-|++ =-++||||.|-+.||..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~ 43 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLPSGTVMDRSIILR 43 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECTTSCEEEHHHHHH
T ss_pred chheECcccCchhcC---CeECCCCCEECHHHHHH
Confidence 456799999999887 23578999999999864
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=93.44 E-value=0.029 Score=41.84 Aligned_cols=29 Identities=17% Similarity=0.309 Sum_probs=23.4
Q ss_pred CccccccccccCCCceEEEecCCCc-cCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHG-RFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~-FH~~Cl~ 329 (331)
...|.||++.+.+ ...+||+|. |=..|+-
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~ 47 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAA 47 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHT
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHH
Confidence 4689999998765 678899999 8777764
No 71
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=92.97 E-value=0.032 Score=43.55 Aligned_cols=33 Identities=6% Similarity=-0.219 Sum_probs=26.4
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.++.-.|+||++-|++= -++||||.|-+.||..
T Consensus 26 ~p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~ 58 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILR 58 (100)
T ss_dssp CSTTTBCTTTCSBCSSE---EEETTTEEEEHHHHHH
T ss_pred CcHhhCCcCccCcccCC---eECCCCCEEchHHHHH
Confidence 34567999999998863 3578999999999864
No 72
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=92.11 E-value=0.057 Score=41.94 Aligned_cols=32 Identities=13% Similarity=-0.168 Sum_probs=25.9
Q ss_pred CCCccccccccccCCCceEEEecCC-CccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCK-HGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~-H~FH~~Cl~~ 330 (331)
.++..|+||++-|++ -| ++||+ |.|-+.||..
T Consensus 20 p~~~~CpI~~~~m~d--PV-~~~cG~htf~r~cI~~ 52 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD--PV-VLPSSRVTVDRSTIAR 52 (98)
T ss_dssp CTTTBCTTTCSBCSS--EE-ECTTTCCEEEHHHHHH
T ss_pred cHhcCCcCccccccC--Ce-ECCCCCeEECHHHHHH
Confidence 356799999999876 33 47999 9999999864
No 73
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=91.64 E-value=0.071 Score=48.05 Aligned_cols=33 Identities=6% Similarity=-0.227 Sum_probs=26.5
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.++.-.|+||++-|++ -| ++||+|.|-+.||..
T Consensus 205 ~~~~~~c~i~~~~~~d--Pv-~~~~gh~f~~~~i~~ 237 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE--PC-ITPSGITYDRKDIEE 237 (281)
T ss_dssp CCSTTBCTTTCSBCSS--EE-ECSSCCEEETTHHHH
T ss_pred CCcccCCcCcCCHhcC--Ce-ECCCCCEECHHHHHH
Confidence 3456799999999875 33 588999999999863
No 74
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.06 E-value=0.086 Score=48.34 Aligned_cols=32 Identities=22% Similarity=0.095 Sum_probs=26.8
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.+-.|+||++-| .|-|+...|+|.|=+.||..
T Consensus 180 ~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~ 211 (267)
T 3htk_C 180 IELTCPITCKPY--EAPLISRKCNHVFDRDGIQN 211 (267)
T ss_dssp CCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHH
T ss_pred eeeECcCccCcc--cCCeeeCCCCCcccHHHHHH
Confidence 346899999998 56788779999999999864
No 75
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=85.71 E-value=0.18 Score=43.64 Aligned_cols=33 Identities=6% Similarity=-0.227 Sum_probs=26.5
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
.++.-.|+||++-|++ -| ++||||.|=+.||..
T Consensus 103 ip~~f~CPI~~elm~D--PV-~~~~Ghtfer~~I~~ 135 (179)
T 2f42_A 103 IPDYLCGKISFELMRE--PC-ITPSGITYDRKDIEE 135 (179)
T ss_dssp CCGGGBCTTTCSBCSS--EE-ECTTSCEEEHHHHHH
T ss_pred CcHhhcccCccccCCC--Ce-ECCCCCEECHHHHHH
Confidence 3466799999999885 44 459999999999864
No 76
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=85.49 E-value=0.48 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=25.4
Q ss_pred CCCccccccccccCC--CceEEEecCCCccCccccc
Q 020063 296 HGGETCAICLEDYQD--GEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~--gd~vRvLPC~H~FH~~Cl~ 329 (331)
.+...|.||...+.+ ++.|.---|...||..|+-
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~ 39 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHT 39 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSS
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCC
Confidence 356799999987533 5555555599999999985
No 77
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.22 E-value=1.1 Score=30.82 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=24.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.....|.||-+. |+.|.---|...||..|+-
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ 37 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD 37 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSS
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCC
Confidence 346789999874 6666655699999999985
No 78
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Probab=80.90 E-value=1.2 Score=45.28 Aligned_cols=60 Identities=5% Similarity=-0.082 Sum_probs=47.2
Q ss_pred CCCeEEEEEcCCCCHHHHHHHHHHcCCcEEEEeccCCCCcccccccCCCCceEEEEEEeccchHHHHHHhc
Q 020063 146 DHINFVLIVRGQCIFEDKIRNAQAAGYRAAIVYNDREKGSLVSMTASHEGVKVHAIFVSLETGVYLKEHAR 216 (331)
Q Consensus 146 ~~~~IvLV~RG~CsF~~Kv~~Aq~aGA~avIV~n~~~~~~~~~m~~~~~~i~IP~v~Is~~~G~~L~~~l~ 216 (331)
..++|++.+| .+..|..+++.+||.++|++++..+. .....+|+++++..++..++.+..
T Consensus 280 v~gkivl~~~---~~~~~~~~~~~~Ga~gvi~~~~~~~~--------~~~~~lP~~~v~~~~g~~i~~~~~ 339 (621)
T 3vta_A 280 LKGKIVVCEA---SFGPHEFFKSLDGAAGVLMTSNTRDY--------ADSYPLPSSVLDPNDLLATLRYIY 339 (621)
T ss_dssp TTTSEEECSS---CCCHHHHHHHHTTCSEEEEECSCCSS--------CCCCSSSEEEECHHHHHHHHHHHH
T ss_pred ccceEEEEec---CCChhHHhhhhcceeEEEEEecCCCc--------ccccccceEEECHHHHHHHHHHHh
Confidence 4589999864 46688999999999999999986421 123468999999999999887754
No 79
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=80.19 E-value=0.86 Score=32.72 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=22.5
Q ss_pred CCccccccccccCCCceEEEecCCCccCcccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
....|.||-+ .|+.|.-=-|...||..||
T Consensus 11 ~~~~C~vC~~---~~~ll~Cd~C~~~~H~~Cl 39 (66)
T 2lri_C 11 PGARCGVCGD---GTDVLRCTHCAAAFHWRCH 39 (66)
T ss_dssp TTCCCTTTSC---CTTCEECSSSCCEECHHHH
T ss_pred CCCCcCCCCC---CCeEEECCCCCCceecccC
Confidence 4568999974 4666655559999999998
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.65 E-value=1.1 Score=31.47 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.....|.||-+ .|+.|.-=-|...||..||-
T Consensus 7 ~~~~~C~vC~~---~g~ll~Cd~C~~~fH~~Cl~ 37 (61)
T 1mm2_A 7 HHMEFCRVCKD---GGELLCCDTCPSSYHIHCLN 37 (61)
T ss_dssp SSCSSCTTTCC---CSSCBCCSSSCCCBCSSSSS
T ss_pred CCCCcCCCCCC---CCCEEEcCCCCHHHcccccC
Confidence 35678999975 45655555589999999985
No 81
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=77.72 E-value=0.84 Score=34.83 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=25.5
Q ss_pred CccccccccccCCCceEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
+-.|.||+++|...-..+-++|+|.|=..|+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl 33 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECL 33 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHC
Confidence 4689999999766667778999999977776
No 82
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=75.91 E-value=1.8 Score=33.89 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
..++.|+||.+.=+..+.|.--.|...||..||-+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~ 39 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDI 39 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCC
Confidence 35689999988633344466656999999999853
No 83
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=75.81 E-value=0.85 Score=34.47 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=22.6
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
....+.|.||- -|..++....=-|+-.||..||
T Consensus 12 ~~~D~~C~VC~-~~t~~~l~pCRvC~RvfH~~CL 44 (89)
T 1wil_A 12 VVNDEMCDVCE-VWTAESLFPCRVCTRVFHDGCL 44 (89)
T ss_dssp CCCSCCCTTTC-CCCSSCCSSCSSSSSCCCHHHH
T ss_pred CCCCcccCccc-cccccceeccccccccccHhhc
Confidence 34568999984 3455554333337899999997
No 84
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=74.76 E-value=1.8 Score=30.83 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=23.5
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
....|.||-+. |+.|..=-|...||..||-
T Consensus 7 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ 36 (66)
T 1xwh_A 7 NEDECAVCRDG---GELICCDGCPRAFHLACLS 36 (66)
T ss_dssp CCCSBSSSSCC---SSCEECSSCCCEECTTTSS
T ss_pred CCCCCccCCCC---CCEEEcCCCChhhcccccC
Confidence 46789999863 6666555599999999985
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=73.14 E-value=1.5 Score=30.70 Aligned_cols=33 Identities=18% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCcccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
......|.||-+ .|+.|.---|...||..|+-.
T Consensus 8 ~~~~~~C~vC~~---~g~ll~CD~C~~~fH~~Cl~p 40 (61)
T 2l5u_A 8 TDHQDYCEVCQQ---GGEIILCDTCPRAYHMVCLDP 40 (61)
T ss_dssp SCCCSSCTTTSC---CSSEEECSSSSCEEEHHHHCT
T ss_pred CCCCCCCccCCC---CCcEEECCCCChhhhhhccCC
Confidence 345678999986 366666666999999999853
No 86
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=72.25 E-value=2.1 Score=29.78 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=23.9
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.+..|.||-.. |+.|.-=-|...||..|+-
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ 33 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCDTCSRVYHLDCLD 33 (60)
T ss_dssp CCSSCTTTCCC---SSCEECSSSSCEECGGGSS
T ss_pred CCCCCcCCCCC---CcEEEcCCCCcCEECCcCC
Confidence 45789999873 6666666699999999985
No 87
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=71.83 E-value=0.77 Score=32.24 Aligned_cols=30 Identities=17% Similarity=-0.066 Sum_probs=23.9
Q ss_pred ccccccccccCCCceEEEecCCCccCcccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
..|+||++-+++ -|...+|+|.|=++||..
T Consensus 4 ~~CpIs~~~m~d--PV~~~~sG~~yer~~I~~ 33 (61)
T 2bay_A 4 MLCAISGKVPRR--PVLSPKSRTIFEKSLLEQ 33 (61)
T ss_dssp CCCTTTCSCCSS--EEEETTTTEEEEHHHHHH
T ss_pred EEecCCCCCCCC--CEEeCCCCcEEcHHHHHH
Confidence 579999999884 444447999999998864
No 88
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.69 E-value=2.4 Score=32.32 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=24.6
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+...|.||-..-.+++.|-.=-|...||..||-
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~ 47 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLL 47 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSS
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCC
Confidence 456899999875444455554599999999985
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.96 E-value=1.5 Score=29.30 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=22.9
Q ss_pred cccccccccCCCceEEEecCCCccCcccc
Q 020063 300 TCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
.|.||-..-.+++.|.---|...||..|+
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl 30 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCL 30 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHH
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccC
Confidence 58899877555666666669999999998
No 90
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=69.88 E-value=0.97 Score=40.63 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=24.9
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.-.+|+||-+-.-.|.+.. .|+|.||..|+-
T Consensus 179 ~i~~C~iC~~iv~~g~~C~--~C~~~~H~~C~~ 209 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCE--TCGIRMHLPCVA 209 (238)
T ss_dssp TCCBCTTTCSBCSSCEECS--SSCCEECHHHHH
T ss_pred CCCcCcchhhHHhCCcccC--ccChHHHHHHHH
Confidence 3679999999988875432 399999999973
No 91
>4f54_A Uncharacterized protein; PF13590 family protein, DUF4136, structural genomics, joint for structural genomics, JCSG; HET: MLY; 1.60A {Bacteroides thetaiotaomicron}
Probab=69.54 E-value=1.6 Score=38.23 Aligned_cols=8 Identities=50% Similarity=1.493 Sum_probs=3.8
Q ss_pred ccccc-ccc
Q 020063 12 GWGWG-WGW 19 (331)
Q Consensus 12 ~~~~~-~~~ 19 (331)
+|+|| |||
T Consensus 105 ~~~~~Y~G~ 113 (197)
T 4f54_A 105 EWWWGYPGY 113 (197)
T ss_dssp SGGGGSTTS
T ss_pred ccccccCcc
Confidence 45454 443
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.51 E-value=3 Score=31.66 Aligned_cols=32 Identities=16% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
....+.|.||-+. |+.|..--|.-.||..||.
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~ 53 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHL 53 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSS
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCC
Confidence 3356799999964 6665555588999999984
No 93
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=65.87 E-value=4.1 Score=28.47 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=26.7
Q ss_pred CCccccccccccCC-CceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQD-GEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~-gd~vRvLPC~H~FH~~Cl~ 329 (331)
+...|.||-..|.+ ++.|..--|..=||..|+=
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvg 38 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVK 38 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccC
Confidence 45679999999975 4577777799999999973
No 94
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.01 E-value=2.4 Score=33.39 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=24.2
Q ss_pred Ccccccccccc------CCCceEEEecCCCccCcccc
Q 020063 298 GETCAICLEDY------QDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf------~~gd~vRvLPC~H~FH~~Cl 328 (331)
...|.+|+.+= +.++.|.---|...||..||
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl 41 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCL 41 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHH
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchh
Confidence 46899999862 34466666669999999998
No 95
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=60.95 E-value=3.7 Score=30.98 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=22.9
Q ss_pred CCcccccccccc-CCC-ceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDY-QDG-EKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf-~~g-d~vRvLPC~H~FH~~Cl~ 329 (331)
+...|.||.+.- .++ +.|..=-|.-.||..|+-
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~ 58 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 58 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHT
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCC
Confidence 457899999763 233 333333499999999984
No 96
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=59.32 E-value=4.6 Score=29.25 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCcccccccccc-CCCceEEEec-CCCccCccccc
Q 020063 296 HGGETCAICLEDY-QDGEKLKVLS-CKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf-~~gd~vRvLP-C~H~FH~~Cl~ 329 (331)
.+...|.||.+.- .+++.+-.-- |.-.||..|+-
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~ 49 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYG 49 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCC
Confidence 3567999998764 2333443334 99999999984
No 97
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.39 E-value=5.3 Score=30.07 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=22.3
Q ss_pred CccccccccccCC--CceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQD--GEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~--gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|.||...-.+ ++.|-.=-|...||..|+.
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHK 49 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSS
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCC
Confidence 4589999986443 3333333399999999985
No 98
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=57.08 E-value=3.4 Score=29.87 Aligned_cols=33 Identities=9% Similarity=0.016 Sum_probs=23.9
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+...|.||-.....++.|..=-|.--||..|+=
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~ 49 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVG 49 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHT
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCC
Confidence 445799998886433455555599999999973
No 99
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=52.69 E-value=9.4 Score=29.22 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=24.8
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..| ||-....+|..|..=-|.--||..|+-
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~ 58 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQHIDCMG 58 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEEETTTTT
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcCcCcCCC
Confidence 457 898888888887777799999999974
No 100
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.84 E-value=9.8 Score=27.89 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=22.3
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..|.||-..=..++.|--=-|...||..||-
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLN 57 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSS
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccC
Confidence 3789998753345555444499999999985
No 101
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=45.75 E-value=5.3 Score=23.93 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=21.7
Q ss_pred ccccccccccCCCceEEEecCCCccCcccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
+.|+.|-...-..|++. -=+..||+.|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVN--CLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCC--SSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEE--ECCeEecccCC
Confidence 58999988877777654 34799999994
No 102
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.79 E-value=19 Score=25.94 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=22.5
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|+-|-+...+++.|+.+ +..||..|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~--~~~wH~~CF~ 44 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQSLLAL--DKQWHVSCFK 44 (80)
T ss_dssp CSCCTTTCCCCSSSCCEEET--TEEECTTTCB
T ss_pred CCCCcCcCCeeCCCeEEEEC--CcccccccCC
Confidence 46788888888778876654 6778888864
No 103
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=43.70 E-value=10 Score=29.77 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=23.8
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..|.||-..-.+++.|.---|...||..||-
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 89 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLN 89 (114)
T ss_dssp CCCTTTTCCTTTTTEEECSSSCCEEETTTSS
T ss_pred CccCcccccCCCCceEEcCCCCccccccccC
Confidence 3688998865566666666699999999985
No 104
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=43.21 E-value=15 Score=28.67 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=23.2
Q ss_pred CCCccccccccccCCCceEEEe--cCCCccCcccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVL--SCKHGRFLLLLVL 330 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvL--PC~H~FH~~Cl~~ 330 (331)
..++.|.+|-+ .|+.|--= .|-..||..||-|
T Consensus 13 ~~~~~C~~C~~---~G~ll~CD~~~Cp~~fH~~Cl~L 46 (107)
T 4gne_A 13 MHEDYCFQCGD---GGELVMCDKKDCPKAYHLLCLNL 46 (107)
T ss_dssp SSCSSCTTTCC---CSEEEECCSTTCCCEECTGGGTC
T ss_pred CCCCCCCcCCC---CCcEeEECCCCCCcccccccCcC
Confidence 35678999983 46655544 4879999999864
No 105
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=42.92 E-value=8.3 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCccccccccccCCCc-eEEEe-cCCCccCcccc
Q 020063 297 GGETCAICLEDYQDGE-KLKVL-SCKHGRFLLLL 328 (331)
Q Consensus 297 ~~~~CaICLedf~~gd-~vRvL-PC~H~FH~~Cl 328 (331)
....|.+|...|.+++ .|..- -|.-=||..|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cv 40 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICT 40 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhcc
Confidence 4568999999998765 66666 69999999985
No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=42.25 E-value=9.1 Score=27.46 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=20.3
Q ss_pred cccccccccCCCceEEEecCCCccCccccc
Q 020063 300 TCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.|.||-..=..++.|--=-|...||..||-
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~ 49 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD 49 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSS
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCC
Confidence 677887653334444333389999999985
No 107
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.39 E-value=14 Score=26.73 Aligned_cols=29 Identities=28% Similarity=0.278 Sum_probs=15.6
Q ss_pred CccccccccccCCCceEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
...|+.|-+...++|.|. .-+..||..|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~--a~~~~wH~~CF 43 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC--VNGHFFHRSCF 43 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC--BTTBCCBTTTC
T ss_pred CCCCcccCCCcccceEEE--ECCCeeCCCcC
Confidence 345666666555555543 23555666654
No 108
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=40.18 E-value=11 Score=26.62 Aligned_cols=13 Identities=23% Similarity=0.567 Sum_probs=6.3
Q ss_pred ccccccccccCCC
Q 020063 299 ETCAICLEDYQDG 311 (331)
Q Consensus 299 ~~CaICLedf~~g 311 (331)
-.|+.|-..+..+
T Consensus 28 F~C~~C~~~L~~~ 40 (76)
T 1iml_A 28 LKCEKCGKTLTSG 40 (76)
T ss_dssp CBCTTTCCBCCTT
T ss_pred CCccccCccCCCC
Confidence 3455555444443
No 109
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=39.43 E-value=7.9 Score=30.25 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=19.8
Q ss_pred ccCCCceEEEecCCCccCcccccc
Q 020063 307 DYQDGEKLKVLSCKHGRFLLLLVL 330 (331)
Q Consensus 307 df~~gd~vRvLPC~H~FH~~Cl~~ 330 (331)
....|||||.|-|=+.|...||.|
T Consensus 17 ~~~~G~KVRFLGCV~sY~tg~L~L 40 (105)
T 3kf6_B 17 DCKDGQKLRFLGCVQSYKNGILRL 40 (105)
T ss_dssp GSCTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCCCCEEEEEEEeeeeccEEEEE
Confidence 457899999999999988777654
No 110
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=39.32 E-value=15 Score=28.63 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=22.1
Q ss_pred Cccccccccc-cCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLED-YQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLed-f~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
-..|.||-+. ..+++.|----|...||..||.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~ 93 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCD 93 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCS
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCC
Confidence 3478999874 3334444444499999999983
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=39.05 E-value=11 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=22.2
Q ss_pred CCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 296 HGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 296 ~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..++.|+||-+. ||.+--=.|-..||.+||.
T Consensus 55 g~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~ 85 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCIL 85 (129)
T ss_dssp SCBSSCTTTCCC---SEEEECSSSSCEEEHHHHH
T ss_pred CCCCcCeecCCC---CeeEecCCCchhhhHHHhC
Confidence 356789999864 5543222388999999996
No 112
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.21 E-value=26 Score=24.62 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=18.0
Q ss_pred CccccccccccCCCceEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
...|+.|-+...+++.|.. -+..||..|.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a--~~~~~H~~CF 37 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSS--LGKDWHKFCL 37 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEE--TTEEEETTTC
T ss_pred CCCCcCCCCEeECCeEEEE--CCeEeeCCCC
Confidence 3567777777666665543 3566776664
No 113
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=36.28 E-value=16 Score=28.26 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=21.4
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..|.||-+.-.+...|.---|...||..||-
T Consensus 55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ 85 (111)
T 2ysm_A 55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQ 85 (111)
T ss_dssp CCCTTTCCCSCCTTEEECSSSCCEEEGGGSS
T ss_pred CcccccCccCCCCCeeECCCCCcHHhHHhcC
Confidence 3677887664443445554599999999984
No 114
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.70 E-value=31 Score=22.59 Aligned_cols=6 Identities=17% Similarity=0.373 Sum_probs=2.3
Q ss_pred hhhccC
Q 020063 253 AFITPR 258 (331)
Q Consensus 253 ~~~~~r 258 (331)
+|+.+|
T Consensus 32 ~~~~RR 37 (44)
T 2ks1_B 32 GLFMRR 37 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
No 115
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=34.62 E-value=20 Score=25.57 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=21.5
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|+.|-+...+++.++. -+..||.+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a--~~~~~H~~CF~ 36 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQC--DGRSFHRCCFL 36 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEE--TTEEEESSSEE
T ss_pred CCcCcCcCccccCceeEEe--CCcccccccCc
Confidence 4678888888877776544 56788888853
No 116
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=32.86 E-value=16 Score=30.11 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=24.1
Q ss_pred CCCCccccccccccCCCceEEEecCCCccCccccc
Q 020063 295 CHGGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 295 ~~~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...++.|.||-+ -||.+--=.|-..||..||.
T Consensus 60 Dg~~d~C~vC~~---GG~LlcCD~Cpr~Fh~~Cl~ 91 (142)
T 2lbm_A 60 DGMDEQCRWCAE---GGNLICCDFCHNAFCKKCIL 91 (142)
T ss_dssp TSCBCSCSSSCC---CSSEEECSSSCCEEEHHHHH
T ss_pred CCCCCeecccCC---CCcEEeCCCCCCeeeHhhcC
Confidence 335689999987 36655444499999999986
No 117
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=32.27 E-value=16 Score=26.72 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=20.1
Q ss_pred cccccccccCCCceEEEecCCCccCccccc
Q 020063 300 TCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 300 ~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.|.||-..=.+++.|--=-|...||..||.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~ 57 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLD 57 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSS
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCC
Confidence 677887664333433333389999999986
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=32.02 E-value=19 Score=27.81 Aligned_cols=30 Identities=17% Similarity=0.291 Sum_probs=23.8
Q ss_pred ccccccccccCCC-ceEEEe-cCCCccCcccc
Q 020063 299 ETCAICLEDYQDG-EKLKVL-SCKHGRFLLLL 328 (331)
Q Consensus 299 ~~CaICLedf~~g-d~vRvL-PC~H~FH~~Cl 328 (331)
..|.||...|.+. +.+..= -|.-=||..|.
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CV 35 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECT 35 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccC
Confidence 5799999999665 455555 58999999996
No 119
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=31.37 E-value=27 Score=24.82 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=24.5
Q ss_pred CccccccccccCCCc-eEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGE-KLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd-~vRvLPC~H~FH~~Cl~ 329 (331)
...| ||-..+.+|+ .|..=-|..=||..|+=
T Consensus 16 ~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg 47 (72)
T 1wee_A 16 KVDC-KCGTKDDDGERMLACDGCGVWHHTRCIG 47 (72)
T ss_dssp EECC-TTCCCSCCSSCEEECSSSCEEEETTTTT
T ss_pred ceEe-eCCCccCCCCcEEECCCCCCccCCeeec
Confidence 3468 7998887885 77777799999999973
No 120
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.75 E-value=28 Score=25.24 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=23.9
Q ss_pred ccccccccccC-CCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQ-DGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~-~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.-| ||-..+. .++.|..--|..=||..|+=
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvg 43 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVG 43 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHT
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecC
Confidence 345 9999886 56678877799999999973
No 121
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.23 E-value=39 Score=24.69 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=21.5
Q ss_pred CccccccccccCCCceEEEecCCCccCccccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
...|+-|-+...++|.|+ .-+..||..|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~--a~~~~~H~~CF~ 44 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLL--ANQQVFHISCFR 44 (91)
T ss_dssp SCBCTTTCCBCCTTSEEE--CSSSEEETTTCB
T ss_pred CCcCccCCCccCCceeEE--ECCCEECCCCCe
Confidence 467888888887777653 456788888753
No 122
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=28.01 E-value=26 Score=31.03 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=19.5
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
..|.+|-..=..++.|-.=-|...||..||-
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~ 205 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLD 205 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCC
Confidence 3688998753344454444499999999985
No 123
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=27.82 E-value=18 Score=30.93 Aligned_cols=10 Identities=70% Similarity=1.065 Sum_probs=8.5
Q ss_pred ceEEEEcCCc
Q 020063 3 PYYYISTSRG 12 (331)
Q Consensus 3 ~~~~~~~~~~ 12 (331)
.|||||||.|
T Consensus 105 ~YY~IstS~G 114 (178)
T 1iko_P 105 DYYIISTSNG 114 (178)
T ss_dssp EEEEECCCCB
T ss_pred ceEEEecCCc
Confidence 5999999876
No 124
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.00 E-value=37 Score=24.26 Aligned_cols=30 Identities=13% Similarity=0.065 Sum_probs=24.5
Q ss_pred ccccccccccCCCceEEEecCCCccCccccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
.-| ||-..+..+..|..--|..=||..|+=
T Consensus 17 ~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvg 46 (76)
T 1wem_A 17 LYC-ICRQPHNNRFMICCDRCEEWFHGDCVG 46 (76)
T ss_dssp CCS-TTCCCCCSSCEEECSSSCCEEEHHHHS
T ss_pred CEE-ECCCccCCCCEEEeCCCCCcEeCeEEc
Confidence 456 899988766788877799999999963
No 125
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=26.20 E-value=41 Score=23.75 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=25.1
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
+..-| ||-..+..+..|..--|..=||..|+=
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvg 49 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAK 49 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccC
Confidence 44567 999887755578877799999999973
No 126
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.02 E-value=46 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=14.4
Q ss_pred CccccccccccCCCceEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
...|+-|-+... ++.++. -+..||..|.
T Consensus 5 ~~~C~~C~~~I~-~~~~~a--~~~~~H~~CF 32 (70)
T 2d8x_A 5 SSGCHQCGEFII-GRVIKA--MNNSWHPECF 32 (70)
T ss_dssp SSBCSSSCCBCC-SCCEEE--TTEEECTTTS
T ss_pred CCcCccCCCEec-ceEEEE--CcccccccCC
Confidence 345666666554 333333 2456666654
No 127
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=25.91 E-value=48 Score=21.69 Aligned_cols=6 Identities=33% Similarity=0.313 Sum_probs=2.2
Q ss_pred hhhccC
Q 020063 253 AFITPR 258 (331)
Q Consensus 253 ~~~~~r 258 (331)
+++.+|
T Consensus 31 ~~~~RR 36 (44)
T 2l2t_A 31 AVYVRR 36 (44)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 333333
No 128
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=24.02 E-value=36 Score=22.58 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=24.0
Q ss_pred cccccccccCCCc-eEEEe-cCCCccCcccccc
Q 020063 300 TCAICLEDYQDGE-KLKVL-SCKHGRFLLLLVL 330 (331)
Q Consensus 300 ~CaICLedf~~gd-~vRvL-PC~H~FH~~Cl~~ 330 (331)
.|.+|...|.+++ .|.-- -|.-=||..|+=+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl 36 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGV 36 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTC
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCC
Confidence 5779999987654 67766 6998999999743
No 129
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.55 E-value=56 Score=23.70 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=21.7
Q ss_pred CCccccccccccCCCceEEEecCCCccCccccc
Q 020063 297 GGETCAICLEDYQDGEKLKVLSCKHGRFLLLLV 329 (331)
Q Consensus 297 ~~~~CaICLedf~~gd~vRvLPC~H~FH~~Cl~ 329 (331)
....|+.|-+... ++.|+. -+..||..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v~a--~~~~~H~~CF~ 53 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFLVA--LGKSWHPEEFN 53 (90)
T ss_dssp CCCBBSSSCCBCC-SCEEEE--TTEEECTTTCB
T ss_pred CCCCCccCCCEec-ceEEEE--CCccccccCCc
Confidence 3568999988874 565543 47889998864
No 130
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.64 E-value=54 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=16.7
Q ss_pred ccccccccccCCCceEEEecCCCccCcccc
Q 020063 299 ETCAICLEDYQDGEKLKVLSCKHGRFLLLL 328 (331)
Q Consensus 299 ~~CaICLedf~~gd~vRvLPC~H~FH~~Cl 328 (331)
..|+.|-+...++|.+ +..=+..||..|.
T Consensus 16 ~~C~~C~~~I~~~~~~-~~a~~~~~H~~CF 44 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQN-VEYKGTVWHKDCF 44 (82)
T ss_dssp CBCSSSCCBCCSSSCE-EECSSCEEETTTC
T ss_pred CcCccCCcccccCceE-EEECccccccccC
Confidence 4677777766665542 1123566776664
No 131
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=21.12 E-value=33 Score=27.86 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=21.0
Q ss_pred CCccccccccccCCCc-eEEEec-CCCccC
Q 020063 297 GGETCAICLEDYQDGE-KLKVLS-CKHGRF 324 (331)
Q Consensus 297 ~~~~CaICLedf~~gd-~vRvLP-C~H~FH 324 (331)
.-+.|+-|-++|.-.| .+-+-| |+|.+-
T Consensus 26 ~lP~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp CSCCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred cCCCCCCCCCcceEecCCeEECCccccccC
Confidence 4578999999965544 356778 999984
No 132
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.33 E-value=64 Score=22.09 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=15.4
Q ss_pred CccccccccccCCCc-eEEEecCCCccCcccc
Q 020063 298 GETCAICLEDYQDGE-KLKVLSCKHGRFLLLL 328 (331)
Q Consensus 298 ~~~CaICLedf~~gd-~vRvLPC~H~FH~~Cl 328 (331)
...|+.|-+.....+ .++.+ +..||..|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~--~~~~H~~CF 34 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVAL--DRVFHVGCF 34 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECS--SSEECTTTC
T ss_pred CCCCccCCCccCCCceEEEEC--CCeEcccCC
Confidence 346666666555432 33333 466666664
Done!