BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020065
(331 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 393 bits (1010), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/207 (88%), Positives = 200/207 (96%)
Query: 16 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75
VFSAFGFVHKITTFEKTAG+QALVQF+D ETA++AK ALDGRSIPRYLL E +G C+L+I
Sbjct: 133 VFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLALDGRSIPRYLLAETVGQCSLKI 192
Query: 76 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 135
TYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESNVLLASIEN
Sbjct: 193 TYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESNVLLASIEN 252
Query: 136 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 195
MQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALEGHCIYDGG
Sbjct: 253 MQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYDGG 312
Query: 196 FCKLHISYSRHTDLSIKVNNDRSRDYT 222
FCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 313 FCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 76/126 (60%), Gaps = 7/126 (5%)
Query: 127 NVLLASIE-NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185
NVLL +IE + V++DVLH+VFSAFG V KI F+K G QAL+Q+ D +TA AK A
Sbjct: 111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLA 170
Query: 186 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 239
L+G I G C L I+YS HTDL++K + RSRDYT P P+ S GQ
Sbjct: 171 LDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQV 230
Query: 240 PVPMVG 245
V + G
Sbjct: 231 AVGVDG 236
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 344 bits (883), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 207/286 (72%), Gaps = 29/286 (10%)
Query: 16 VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75
VFSAFGFVHKI TFEK AGFQALVQF+D ETAS+A++ALDGRSIPRYLL ++G C+LR+
Sbjct: 132 VFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSALDGRSIPRYLLSAHVGSCSLRM 191
Query: 76 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIEN 135
+YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SNVLL IEN
Sbjct: 192 SYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSNVLLGLIEN 251
Query: 136 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 195
MQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALEGHCIYDGG
Sbjct: 252 MQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALEGHCIYDGG 311
Query: 196 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQ 255
+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q P V +A
Sbjct: 312 YCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVSGSA------- 357
Query: 256 FAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 301
PP AGW P A G PYM P S P G
Sbjct: 358 ----PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 388
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 7/109 (6%)
Query: 127 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185
NVLL + E ++ + V++DV+H+VFSAFG V KIA F+K G QAL+Q+ DV+TA A+ A
Sbjct: 110 NVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSA 169
Query: 186 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 228
L+G I G C L +SYS HTDL+IK + RSRDYT P P+
Sbjct: 170 LDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 218
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 127/268 (47%), Gaps = 52/268 (19%)
Query: 13 ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 72
+LQ+F FG + K+ A QAL+Q D +A SA N+ P T
Sbjct: 22 LLQLFQPFGVITKLVMLR--AKNQALLQMQDVSSAVSALQFF-----------TNVQP-T 67
Query: 73 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 132
+R ++ V+F SH+ + I+ + + G++ EP + +LL +
Sbjct: 68 IR-----GRNVYVQFSSHQE-----------LTTIEQN------IHGREDEP-NRILLVT 104
Query: 133 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 192
I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY Q A A+ AL+G IY
Sbjct: 105 IHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIY 164
Query: 193 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 252
DG C+L I +S +L + NNDRSRDYT P+ P G+ P G T Y
Sbjct: 165 DGC-CQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQK-----GRSSHPCYGDTGVAY- 217
Query: 253 GAQFAPPPPEQPMMHQPTAAGWGAVPPA 280
P+ AA G +PP
Sbjct: 218 --------PQMANTSAIAAAFGGGLPPG 237
Score = 94.7 bits (234), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 39/220 (17%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
QVFS +GFV K+ TF+K+AGFQAL+Q+ + A+SA+ AL GR+I G C L
Sbjct: 119 QVFSPYGFVEKLVTFQKSAGFQALIQYQVQQCAASARTALQGRNIYD-------GCCQLD 171
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSAIDAS-- 110
I +S +L V + + RSRDYTNP LP SAI A+
Sbjct: 172 IQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSAIAAAFG 231
Query: 111 GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQAL 170
G L G+ G VL++++ ++ D L +FS +G + +I + +N AL
Sbjct: 232 GGLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RNKPDHAL 286
Query: 171 IQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 210
+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 287 VQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 323
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 178
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 179 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 238
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291
Query: 239 QPVPMVGA----TANQYNGAQFAP 258
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/87 (48%), Positives = 55/87 (63%), Gaps = 7/87 (8%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 254
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLP 101
I +S T L+VK+ + +SRDYT P LP
Sbjct: 255 IDFSKLTSLNVKYNNDKSRDYTRPDLP 281
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 178
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 179 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 63/105 (60%), Gaps = 9/105 (8%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 201 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 253
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 117
I +S T L+VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 254 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 298
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 178
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 179 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 201 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 253
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 105
I +S T L+VK+ + +SRDYT P LP S
Sbjct: 254 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 284
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 22/198 (11%)
Query: 11 IFILQVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69
+FIL F +G V ++ F K ALV+ +D A A + L+G +
Sbjct: 378 LFIL--FGVYGDVQRVKILFNKKE--NALVEMADGSQAQLAMSHLNGHKLHGK------- 426
Query: 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 129
++RIT S H + + + + T Y G + + + P S L
Sbjct: 427 --SVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNF----QNIFPPSATL 480
Query: 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189
+ N+ +V+ D L +FS+ G V K F + ALIQ V+ AV A L H
Sbjct: 481 --HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNH 538
Query: 190 CIYDGGFCKLHISYSRHT 207
+ G L +S+S+ T
Sbjct: 539 DL--GENHHLRVSFSKST 554
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 178
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 179 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 110/228 (48%), Gaps = 44/228 (19%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 254
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE--------- 123
I +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 255 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIP 314
Query: 124 -------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK 163
++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 315 SAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKILFNK 373
Query: 164 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 211
AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 374 KE--NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 416
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 22/198 (11%)
Query: 11 IFILQVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69
+FIL F +G V ++ F K ALVQ +D A A + L+G + + P
Sbjct: 354 LFIL--FGVYGDVQRVKILFNKKE--NALVQMADGNQAQLAMSHLNGHKL--HGKP---- 403
Query: 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 129
+RIT S H ++ + + + T Y G + + + P S L
Sbjct: 404 ---IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNF----QNIFPPSATL 456
Query: 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189
+ N+ +V+ + L ++FS+ G V K F + ALIQ V+ AV A L H
Sbjct: 457 --HLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNH 514
Query: 190 CIYDGGFCKLHISYSRHT 207
+ G L +S+S+ T
Sbjct: 515 DL--GENHHLRVSFSKST 530
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 178
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 179 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 109/228 (47%), Gaps = 44/228 (19%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D +A AK +LDG++I CTLR
Sbjct: 202 QIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN-------ACCTLR 254
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE--------- 123
I +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 255 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAPLAIP 314
Query: 124 -------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK 163
++VLL S N + VT L ++F +G VQ++ +F+K
Sbjct: 315 SAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKVLFNK 373
Query: 164 NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 211
AL+Q D A +A L GH ++ + I+ S+H + +
Sbjct: 374 KE--NALVQMADGSQAQLAMSHLNGHKLHGK---PVRITLSKHQSVQL 416
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 22/198 (11%)
Query: 11 IFILQVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69
+FIL F +G V ++ F K ALVQ +D A A + L+G + + P
Sbjct: 354 LFIL--FGVYGDVQRVKVLFNKKE--NALVQMADGSQAQLAMSHLNGHKL--HGKP---- 403
Query: 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 129
+RIT S H + + + + T Y G + + + P S L
Sbjct: 404 ---VRITLSKHQSVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNF----QNIFPPSATL 456
Query: 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189
+ N+ +++ D L ++FS+ G + K F + ALIQ V+ A+ A L H
Sbjct: 457 --HLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNH 514
Query: 190 CIYDGGFCKLHISYSRHT 207
+ G L +S+S+ T
Sbjct: 515 DL--GENHHLRVSFSKST 530
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 73 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ES 126
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 127 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 186
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 187 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 46/223 (20%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLR
Sbjct: 199 QIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 251
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS-----------GQLS--- 114
I +S +L+VK+ + +SRDYT P LP AI A+ G LS
Sbjct: 252 IDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLA 311
Query: 115 ---------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159
VG+ G + +L++++ + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVK 369
Query: 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202
+ N ALIQ D + +A L G +Y G ++ +S
Sbjct: 370 IL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLS 410
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 73 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ES 126
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 127 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 186
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 187 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 102/223 (45%), Gaps = 46/223 (20%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLR
Sbjct: 199 QIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 251
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS-----------GQLS--- 114
I +S +L+VK+ + +SRDYT P LP AI A+ G LS
Sbjct: 252 IDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLA 311
Query: 115 ---------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159
VG+ G + +L++++ + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVK 369
Query: 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202
+ N ALIQ D + +A L G +Y G ++ +S
Sbjct: 370 IL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLS 410
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 110 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 165
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 166 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 225
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 226 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 285
P + QPS+ E PM AA +GA P S P
Sbjct: 249 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 275
Query: 286 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 314
G + P + P G+ +PG G
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVSAVPGALG 304
Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 53/88 (60%), Gaps = 7/88 (7%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D A AK ALDG++I CTLR
Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLR 223
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPV 102
I +S T L+VK+ + +SRD+T LP
Sbjct: 224 IDFSKLTSLNVKYNNDKSRDFTRLDLPT 251
Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 22/198 (11%)
Query: 11 IFILQVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69
+FIL F +G VH++ F K ALVQ +D A A N L G+ + +L
Sbjct: 346 LFIL--FGVYGDVHRVKIMFNKKE--NALVQMADASQAQIAMNHLSGQRLYGKVL----- 396
Query: 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 129
R T S H + + + + T + G + + + P S L
Sbjct: 397 ----RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNF----QNIFPPSATL 448
Query: 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189
+ N+ +VT+D L +F+ G K F + ALIQ V+ A+ A L H
Sbjct: 449 --HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506
Query: 190 CIYDGGFCKLHISYSRHT 207
+ G L +S+S+ T
Sbjct: 507 DL--GENHHLRVSFSKST 522
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 184
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 185 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 104/227 (45%), Gaps = 48/227 (21%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q+ D A AK ALDG++I CTLR
Sbjct: 199 QIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN-------ACCTLR 251
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS------AIDAS-----------GQLS--- 114
I +S +L+VK+ + +SRDYT P LP AI A+ G LS
Sbjct: 252 IDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLA 311
Query: 115 ---------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159
VG+ G + +L++++ + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDVQRVK 369
Query: 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206
+ N ALIQ D + +A L G +Y G + ++ S+H
Sbjct: 370 IL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIR--VTLSKH 412
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 110 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 165
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 166 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 225
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 226 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 285
P + QPS+ E PM AA +GA P S P
Sbjct: 249 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 275
Query: 286 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 314
G + P + P G+ +PG G
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVPAVPGALG 304
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 68/234 (29%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D A AK ALDG++I CTLR
Sbjct: 171 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQNIYN-------ACCTLR 223
Query: 75 ITYSAHTDLSVKFQSHRSRDYT----------------------------NPY------- 99
I +S T L+VK+ + +SRD+T +PY
Sbjct: 224 IDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSLEPPMAAAFGAPGIMSSPYAGAAGFA 283
Query: 100 ------------LPVAPSAID--------ASGQLSVGLDGKKLEPESNVLLASIENMQYA 139
+P P A+ SG++++ G P ++VLL + N +
Sbjct: 284 PAIAFPQAAGLSVPAVPGALGPLTLTSSAVSGRMAI--PGASGMPGNSVLLVTNLNPDF- 340
Query: 140 VTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 192
+T L ++F +G V ++ MF+K AL+Q D A +A L G +Y
Sbjct: 341 ITPHGLFILFGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLY 392
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 81/198 (40%), Gaps = 22/198 (11%)
Query: 11 IFILQVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69
+FIL F +G VH++ F K ALVQ +D A A N L G+ + +L
Sbjct: 346 LFIL--FGVYGDVHRVKIMFNKKE--NALVQMADASQAQLAMNHLSGQRLYGKVL----- 396
Query: 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 129
R T S H + + + + T + G + + + P S L
Sbjct: 397 ----RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNF----QNIFPPSATL 448
Query: 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189
+ N+ +VT+D L +F+ G K F + ALIQ V+ A+ A L H
Sbjct: 449 --HLSNIPPSVTMDDLKNLFTEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 506
Query: 190 CIYDGGFCKLHISYSRHT 207
+ G L +S+S+ T
Sbjct: 507 DL--GENHHLRVSFSKST 522
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 118 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 177
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 171 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 230
Query: 178 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 231 NAHYAKMALDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 287
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 7/89 (7%)
Query: 15 QVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74
Q+FS FG V KI TF K FQAL+Q++D A AK ALDG++I CTLR
Sbjct: 200 QIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYN-------ACCTLR 252
Query: 75 ITYSAHTDLSVKFQSHRSRDYTNPYLPVA 103
I +S T L+VK+ + +SRD+T LP
Sbjct: 253 IDFSKLTSLNVKYNNDKSRDFTRLDLPTG 281
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Query: 11 IFILQVFSAFGFVHKITT-FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69
+FIL F +G VH++ F K ALVQ +D A A N L G+ + +L
Sbjct: 375 LFIL--FGVYGDVHRVKIMFNKKE--NALVQMADANQAQLAMNHLSGQRLYGKVL----- 425
Query: 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVL 129
R T S H + + + + T + G + + + P S L
Sbjct: 426 ----RATLSKHQAVQLPREGQEDQGLTKDFSNSPLHRFKKPGSKNF----QNIFPPSATL 477
Query: 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189
+ N+ +VT+D L +F G K F + ALIQ V+ A+ A L H
Sbjct: 478 --HLSNIPPSVTVDDLKNLFIEAGCSVKAFKFFQKDRKMALIQLGSVEEAIQALIELHNH 535
Query: 190 CIYDGGFCKLHISYSRHT 207
+ G L +S+S+ T
Sbjct: 536 DL--GENHHLRVSFSKST 551
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 99 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 156
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 157 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 216
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 217 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 261
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 3 LTLSLLKVIF------ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56
L ++L I+ + + + G V +I F K G QA+V+F ++A AK +L+G
Sbjct: 195 LLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNG 253
Query: 57 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 100
I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 254 ADI-------YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 290
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 99 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 156
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 157 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 216
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 217 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 261
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 14/104 (13%)
Query: 3 LTLSLLKVIF------ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56
L ++L I+ + + + G V +I F K G QA+V+F ++A AK +L+G
Sbjct: 192 LLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSAQRAKASLNG 250
Query: 57 RSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 100
I G CTL+I Y+ T L+V + DYTNP L
Sbjct: 251 ADI-------YSGCCTLKIEYAKPTRLNVFKNDQDTWDYTNPNL 287
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 186 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 245
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 246 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 295
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 296 GSMPMGPGMMQMHM 309
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 8 LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 67
+ V + V + G V +I F++ G QA+V+F A AK AL+G I
Sbjct: 180 ITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------Y 231
Query: 68 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 100
G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 232 AGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 264
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 14/190 (7%)
Query: 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 186 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 245
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 329
Query: 246 ATANQYNGAQFAP-----PPPEQPMMHQPTAAGWGAVP-PASQSMPMMGNHPYMPPGSMP 299
+ + + P P + M A P P + S M G P GS+
Sbjct: 330 DHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGS---PSGSVV 386
Query: 300 MGPGMMQMHM 309
M G+ Q+ M
Sbjct: 387 MVSGLHQLKM 396
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 8 LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN 67
+ V + V + G V +I F++ G QA+V+F A AK AL+G I
Sbjct: 229 ITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADI-------Y 280
Query: 68 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 100
G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 281 AGCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 313
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 13/143 (9%)
Query: 144 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203
+LH FG ++++ + AL+++ + A KE L+G + ++ I Y
Sbjct: 224 ILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN---PRIKIMY 278
Query: 204 S------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG--QQPVPMVGATANQYNGAQ 255
S D S RSR + P S P G P+ G YNGA+
Sbjct: 279 SNDELPPEQDDTSFYSGMKRSRTDMFNNDPSFVSSPHSTGIPGSMRPLRGTNERSYNGAE 338
Query: 256 FAPPPPEQPMMHQPTAAGWGAVP 278
+ ++P +P+A G G +P
Sbjct: 339 YNDVVGKEPNWRRPSANGTGILP 361
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 100 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159
L + P D SG S L L PE+ T L +F +G + +I
Sbjct: 3 LSMKPFRADDSGFQSNNLWVGSLTPET--------------TESDLTELFGRYGDIDRIT 48
Query: 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205
++ G A I Y V+ AV AKEAL+G + ++ I Y+R
Sbjct: 49 VYSSRGF--AFIYYRHVEEAVAAKEALQGANL---NGSQIKIEYAR 89
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 81/215 (37%), Gaps = 54/215 (25%)
Query: 120 KKLEPESNVLLASI-ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL--QALIQYPDV 176
+++ P + + + ++ E ++ L+ +FS FG + I + +N + QA + + +
Sbjct: 4 QEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDI-LVSRNLKMRGQAFVIFKET 62
Query: 177 QTAVVAKEALEGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMVN 230
+A A +++G YD + I YS+ +D+ K V DR R
Sbjct: 63 SSATNALRSMQGFPFYD---KPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVK---- 115
Query: 231 SQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNH 290
VP V N GA P P Q A Q MP M
Sbjct: 116 ----------VPEVQGVKNAMPGAALLPGVPGQM--------------AAMQDMPGMTQA 151
Query: 291 PYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPP 325
P M MHM GQ+ HH G MPPP
Sbjct: 152 PRM-------------MHMAGQAPYMHHPGMMPPP 173
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDV 176
G KL PE N +L I+N+ Y +T + ++ +F FG V++I + + + G A + Y D+
Sbjct: 10 GAKLPPEVNRIL-YIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRG-TAFVVYEDI 67
Query: 177 QTAVVAKEALEGHCI 191
A A E L G+ +
Sbjct: 68 FDAKTACEHLSGYNV 82
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 133 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 192
+ N+ + +H +FSA+G V+ I M + A++ Y + +A+VA++AL ++
Sbjct: 4 VSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS--AIVSYESLSSAIVARDALHNRPVF 61
Query: 193 DG 194
+
Sbjct: 62 EN 63
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 37.0 bits (84), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 37/200 (18%)
Query: 16 VFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 73
+FS FG + + + K G QA V FS+ A A + ++ P Y P +
Sbjct: 33 LFSQFGRILDVVALKTPKLRG-QAWVTFSEVTAAGHAVRQM--QNFPFYDKP-------M 82
Query: 74 RITYS-AHTDLSVKFQ----------------SHRSRDYTNPYLPVAPSAIDASGQLSVG 116
R+ Y+ A +D K + + D P PSA S V
Sbjct: 83 RLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREDSQRPNTANGPSANGPSANNGVP 142
Query: 117 L-----DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 171
G++ P +N+L I+N+ + T +L ++F + ++I M D G+ A +
Sbjct: 143 APSFQPSGQETMPPNNILF--IQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGI-AFV 199
Query: 172 QYPDVQTAVVAKEALEGHCI 191
+Y D A +A + L+G I
Sbjct: 200 EYEDDVQASIAMQPLQGFKI 219
>sp|Q9WUF3|C8AP2_MOUSE CASP8-associated protein 2 OS=Mus musculus GN=Casp8ap2 PE=1 SV=2
Length = 1962
Score = 35.8 bits (81), Expect = 0.43, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 64 LPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLE 123
+PE G C R + T + S +R+ T LP A+ A+ QL + + K++
Sbjct: 578 VPEPSGTCDSRSLETTGTVACLPSGSEHNREETKSELPEPKEALLATSQLRISIPENKMK 637
Query: 124 PESNVLLASIEN 135
E +L S+EN
Sbjct: 638 EEKRLLFKSVEN 649
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 34.7 bits (78), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 133 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 186
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 187 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 239
+G YD + I Y++ +D+ K V DR R+ P + S+ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKAVQGGA 129
Query: 240 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 299
P+VGA P P PM P P P M P + PG +P
Sbjct: 130 AAPVVGAVQ--------GPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
Query: 300 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 327
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 133 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 186
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 187 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 239
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 73 QGFPFYD---KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGG 129
Query: 240 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 299
P+VGA P P PM P P P M P + PG +P
Sbjct: 130 ATPVVGAVQ--------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
Query: 300 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 327
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1
PE=1 SV=4
Length = 1298
Score = 32.7 bits (73), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 39/232 (16%)
Query: 100 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159
L P ++ G V L ++E + + ++ N Q T V H + V K
Sbjct: 502 LANGPDVLETDGLQEVPLCSCRMETPKSREITTLANNQCMATESVDHELGRCTNSVVKYE 561
Query: 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY---DGGFCKLH----ISYSRHTDLSIK 212
+ + L+ D + +V + G C Y G F + IS+ H D + +
Sbjct: 562 LMRPSNKAPLLVLCEDHRGRMVKHQCCPG-CGYFCTAGNFMECQPESSISHRFHKDCASR 620
Query: 213 VNN-----------DRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPP 261
VNN ++++ T+ ++ + GQ+ + A+
Sbjct: 621 VNNASYCPHCGEESSKAKEVTIAKADTTSTVTPVPGQEKGSALEGRAD------------ 668
Query: 262 EQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQS 313
T G A PP S+ + G ++P G P GP + PG S
Sbjct: 669 --------TTTGSAAGPPLSEDDKLQGAASHVPEGFDPTGPAGLGRPTPGLS 712
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 38/210 (18%)
Query: 133 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 186
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 187 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 239
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGA 129
Query: 240 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 299
P+VG P P PM P P P M P + PG +P
Sbjct: 130 AAPVVGTVQ--------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLP 181
Query: 300 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 327
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 39/210 (18%)
Query: 133 IENMQYAVTLD----VLHMVFSAFGPVQKI--AMFDKNGGLQALIQYPDVQTAVVAKEAL 186
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 20 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRG-QAFVIFKEVTSATNALRSM 78
Query: 187 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 239
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 79 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGA 135
Query: 240 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 299
P+VGA P P PM P P P M P + PG +P
Sbjct: 136 AAPVVGAVQ---------PVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 186
Query: 300 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 327
PG M Q MPGQ MPP +P
Sbjct: 187 --PGAMPPQQLMPGQ---------MPPAQP 205
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,597,022
Number of Sequences: 539616
Number of extensions: 5711030
Number of successful extensions: 20180
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 494
Number of HSP's that attempted gapping in prelim test: 18131
Number of HSP's gapped (non-prelim): 2009
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)