Query 020065
Match_columns 331
No_of_seqs 263 out of 1569
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:44:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1190 Polypyrimidine tract-b 100.0 1.6E-34 3.6E-39 262.7 18.8 214 3-229 157-399 (492)
2 KOG1190 Polypyrimidine tract-b 100.0 1.9E-35 4.1E-40 268.7 11.0 223 3-239 35-260 (492)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-33 5.9E-38 275.3 22.4 185 2-227 8-194 (481)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.4E-31 1.6E-35 258.1 25.2 196 2-210 102-354 (481)
5 KOG0148 Apoptosis-promoting RN 100.0 9.9E-31 2.2E-35 226.9 18.9 166 6-210 72-241 (321)
6 KOG1456 Heterogeneous nuclear 100.0 6.5E-30 1.4E-34 230.3 19.3 179 7-228 42-220 (494)
7 TIGR01659 sex-lethal sex-letha 100.0 1.8E-28 3.9E-33 229.9 23.1 153 3-207 114-275 (346)
8 TIGR01628 PABP-1234 polyadenyl 100.0 1.2E-27 2.6E-32 240.1 21.7 172 3-210 185-367 (562)
9 KOG0117 Heterogeneous nuclear 99.9 4.9E-26 1.1E-30 209.7 23.1 190 5-211 92-335 (506)
10 TIGR01645 half-pint poly-U bin 99.9 3.1E-26 6.8E-31 225.9 18.4 162 3-207 114-284 (612)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.5E-25 5.4E-30 210.8 22.8 195 1-208 94-350 (352)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.6E-25 3.5E-30 212.1 18.9 154 3-208 10-172 (352)
13 TIGR01628 PABP-1234 polyadenyl 99.9 1.9E-24 4.1E-29 217.0 16.7 152 2-205 6-165 (562)
14 KOG0144 RNA-binding protein CU 99.9 7.5E-25 1.6E-29 201.1 12.0 156 7-209 45-208 (510)
15 TIGR01622 SF-CC1 splicing fact 99.9 8.2E-24 1.8E-28 207.3 18.1 162 2-206 95-265 (457)
16 KOG1456 Heterogeneous nuclear 99.9 8E-23 1.7E-27 184.6 19.7 194 3-210 129-366 (494)
17 KOG0131 Splicing factor 3b, su 99.9 7.9E-24 1.7E-28 174.4 11.4 155 4-211 17-181 (203)
18 KOG0145 RNA-binding protein EL 99.9 1.1E-23 2.3E-28 182.2 12.4 151 5-207 50-209 (360)
19 TIGR01648 hnRNP-R-Q heterogene 99.9 6.5E-23 1.4E-27 202.1 17.8 157 3-209 145-309 (578)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 6.2E-22 1.4E-26 196.5 18.6 178 3-206 302-501 (509)
21 TIGR01622 SF-CC1 splicing fact 99.9 2.3E-21 5E-26 190.0 19.2 192 2-208 192-449 (457)
22 TIGR01648 hnRNP-R-Q heterogene 99.9 1.5E-21 3.3E-26 192.4 16.4 146 3-207 65-222 (578)
23 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.3E-21 7.2E-26 191.3 18.4 178 2-207 181-375 (509)
24 KOG0109 RNA-binding protein LA 99.9 7.6E-22 1.7E-26 173.3 10.7 140 3-205 9-148 (346)
25 KOG0123 Polyadenylate-binding 99.8 1.8E-20 3.9E-25 177.0 16.1 148 6-212 8-158 (369)
26 KOG0145 RNA-binding protein EL 99.8 1.6E-19 3.5E-24 156.4 15.8 186 6-205 137-356 (360)
27 KOG4206 Spliceosomal protein s 99.8 2.9E-19 6.3E-24 152.9 17.1 185 7-205 20-220 (221)
28 KOG0124 Polypyrimidine tract-b 99.8 1.4E-20 3.1E-25 169.7 8.7 154 5-204 122-287 (544)
29 KOG0127 Nucleolar protein fibr 99.8 1E-19 2.3E-24 171.6 14.5 172 3-205 12-194 (678)
30 KOG0110 RNA-binding protein (R 99.8 2.6E-19 5.5E-24 173.9 12.9 162 3-209 522-695 (725)
31 KOG0146 RNA-binding protein ET 99.8 4E-19 8.7E-24 154.5 11.8 81 123-209 282-367 (371)
32 KOG0127 Nucleolar protein fibr 99.8 2.6E-18 5.7E-23 162.2 16.4 190 1-205 122-376 (678)
33 KOG0123 Polyadenylate-binding 99.8 5.4E-18 1.2E-22 160.2 13.8 159 1-206 81-245 (369)
34 TIGR01645 half-pint poly-U bin 99.7 8.6E-17 1.9E-21 159.3 18.6 70 2-80 210-283 (612)
35 KOG0144 RNA-binding protein CU 99.7 2.4E-17 5.3E-22 151.9 9.9 77 124-205 422-502 (510)
36 KOG0147 Transcriptional coacti 99.7 2.5E-16 5.5E-21 149.5 14.1 191 4-209 286-530 (549)
37 KOG1457 RNA binding protein (c 99.7 7.7E-16 1.7E-20 131.0 12.3 182 5-194 43-276 (284)
38 KOG0147 Transcriptional coacti 99.6 4.2E-16 9.1E-21 148.0 9.5 159 5-204 188-355 (549)
39 KOG0148 Apoptosis-promoting RN 99.6 1.5E-15 3.3E-20 132.6 9.5 79 126-208 60-143 (321)
40 PLN03134 glycine-rich RNA-bind 99.5 3.4E-14 7.3E-19 117.5 10.1 76 126-207 34-114 (144)
41 KOG0105 Alternative splicing f 99.5 2.1E-13 4.5E-18 113.2 13.9 163 3-194 13-178 (241)
42 KOG0110 RNA-binding protein (R 99.5 1.4E-13 3E-18 134.3 13.4 183 3-205 392-596 (725)
43 KOG0106 Alternative splicing f 99.5 3.6E-14 7.7E-19 122.8 7.4 154 4-203 9-167 (216)
44 PF13893 RRM_5: RNA recognitio 99.5 9.4E-14 2E-18 96.0 7.8 56 13-78 1-56 (56)
45 KOG4205 RNA-binding protein mu 99.5 1.1E-13 2.4E-18 126.9 9.6 158 4-211 14-180 (311)
46 PLN03134 glycine-rich RNA-bind 99.5 1.3E-13 2.7E-18 114.1 8.7 71 2-81 40-114 (144)
47 PF13893 RRM_5: RNA recognitio 99.5 3E-13 6.6E-18 93.4 8.0 56 145-204 1-56 (56)
48 PF00076 RRM_1: RNA recognitio 99.4 1.8E-13 4E-18 98.3 6.6 66 131-200 1-70 (70)
49 KOG0107 Alternative splicing f 99.4 2.9E-13 6.2E-18 111.5 7.7 74 131-208 13-86 (195)
50 KOG0124 Polypyrimidine tract-b 99.4 3.9E-12 8.5E-17 115.5 15.4 65 6-79 220-288 (544)
51 KOG0114 Predicted RNA-binding 99.4 3.3E-13 7.2E-18 101.7 6.4 77 126-208 18-96 (124)
52 TIGR01659 sex-lethal sex-letha 99.4 8.8E-13 1.9E-17 124.1 10.6 77 124-206 105-186 (346)
53 KOG1548 Transcription elongati 99.4 9.2E-12 2E-16 112.6 15.1 169 3-204 141-349 (382)
54 KOG0114 Predicted RNA-binding 99.4 6.1E-13 1.3E-17 100.3 6.0 74 1-83 23-97 (124)
55 PF00076 RRM_1: RNA recognitio 99.4 1.3E-12 2.9E-17 93.7 6.3 64 2-74 4-70 (70)
56 KOG0122 Translation initiation 99.4 2.1E-12 4.5E-17 111.7 8.4 77 125-207 188-269 (270)
57 KOG0132 RNA polymerase II C-te 99.3 1E-10 2.2E-15 115.3 19.6 76 126-208 421-496 (894)
58 PLN03120 nucleic acid binding 99.3 1E-11 2.2E-16 110.3 9.8 74 126-206 4-79 (260)
59 KOG0121 Nuclear cap-binding pr 99.3 5.2E-12 1.1E-16 98.9 6.6 73 126-204 36-113 (153)
60 PF14259 RRM_6: RNA recognitio 99.3 9.4E-12 2E-16 89.8 7.3 66 131-200 1-70 (70)
61 KOG0120 Splicing factor U2AF, 99.3 2.9E-11 6.3E-16 116.5 11.1 168 4-205 297-490 (500)
62 KOG0107 Alternative splicing f 99.3 1.1E-11 2.5E-16 102.1 6.9 69 3-81 17-85 (195)
63 KOG0111 Cyclophilin-type pepti 99.2 4.9E-12 1.1E-16 107.7 4.4 80 126-211 10-94 (298)
64 PLN03213 repressor of silencin 99.2 4.2E-11 9E-16 112.7 9.7 77 128-208 10-89 (759)
65 smart00360 RRM RNA recognition 99.2 5.4E-11 1.2E-15 84.4 8.0 67 1-76 1-71 (71)
66 KOG4212 RNA-binding protein hn 99.2 5.3E-10 1.1E-14 104.0 16.4 189 1-204 49-291 (608)
67 smart00362 RRM_2 RNA recogniti 99.2 7.2E-11 1.6E-15 84.1 8.5 67 131-201 2-71 (72)
68 KOG0125 Ataxin 2-binding prote 99.2 4.3E-11 9.4E-16 107.6 8.2 75 127-207 97-174 (376)
69 PLN03120 nucleic acid binding 99.2 4.8E-11 1E-15 106.1 8.3 69 2-80 10-79 (260)
70 KOG0122 Translation initiation 99.2 4.5E-11 9.9E-16 103.5 7.7 70 3-81 196-269 (270)
71 KOG4207 Predicted splicing fac 99.2 2E-11 4.4E-16 103.1 5.3 75 128-208 15-94 (256)
72 PF14259 RRM_6: RNA recognitio 99.2 9E-11 2E-15 84.6 7.5 63 3-74 5-70 (70)
73 KOG4211 Splicing factor hnRNP- 99.2 6.2E-10 1.3E-14 105.1 14.9 155 4-204 18-179 (510)
74 KOG0132 RNA polymerase II C-te 99.2 3.2E-09 7E-14 105.0 20.3 67 7-84 432-498 (894)
75 KOG4207 Predicted splicing fac 99.2 2.2E-11 4.9E-16 102.9 4.5 70 3-81 20-93 (256)
76 PLN03121 nucleic acid binding 99.2 1.4E-10 3.1E-15 101.5 9.7 73 126-205 5-79 (243)
77 PLN03213 repressor of silencin 99.2 5.2E-11 1.1E-15 112.1 7.4 70 3-81 17-88 (759)
78 smart00360 RRM RNA recognition 99.2 1.3E-10 2.8E-15 82.4 7.7 65 133-201 1-70 (71)
79 KOG0125 Ataxin 2-binding prote 99.2 4.1E-11 9E-16 107.7 6.1 70 3-81 103-174 (376)
80 COG0724 RNA-binding proteins ( 99.2 3.3E-10 7.1E-15 101.9 12.1 136 2-164 121-261 (306)
81 smart00361 RRM_1 RNA recogniti 99.1 1.1E-10 2.4E-15 84.4 6.3 57 10-75 2-69 (70)
82 cd00590 RRM RRM (RNA recogniti 99.1 3.6E-10 7.9E-15 80.8 9.0 69 131-203 2-74 (74)
83 KOG4206 Spliceosomal protein s 99.1 1.6E-10 3.6E-15 99.3 8.3 81 125-211 8-94 (221)
84 KOG0121 Nuclear cap-binding pr 99.1 1.1E-10 2.4E-15 91.5 5.7 68 3-79 43-114 (153)
85 smart00362 RRM_2 RNA recogniti 99.1 3.4E-10 7.3E-15 80.5 7.7 66 2-76 5-72 (72)
86 KOG0130 RNA-binding protein RB 99.1 1.4E-10 3E-15 91.7 5.1 65 7-80 83-151 (170)
87 KOG0126 Predicted RNA-binding 99.1 1.2E-11 2.7E-16 102.4 -1.2 66 3-77 42-111 (219)
88 KOG0111 Cyclophilin-type pepti 99.1 8.4E-11 1.8E-15 100.3 3.7 71 5-84 19-93 (298)
89 PLN03121 nucleic acid binding 99.1 5.4E-10 1.2E-14 97.9 8.1 68 3-80 12-80 (243)
90 KOG0130 RNA-binding protein RB 99.1 3.9E-10 8.4E-15 89.2 6.5 74 126-205 72-150 (170)
91 KOG0126 Predicted RNA-binding 99.1 2.2E-11 4.7E-16 101.0 -0.6 72 129-204 36-112 (219)
92 KOG0149 Predicted RNA-binding 99.0 2.7E-10 5.8E-15 98.4 5.9 67 4-80 20-90 (247)
93 KOG0113 U1 small nuclear ribon 99.0 6.5E-10 1.4E-14 98.9 7.6 69 4-81 109-181 (335)
94 KOG0109 RNA-binding protein LA 99.0 4.3E-10 9.4E-15 99.7 5.7 70 129-207 5-74 (346)
95 cd00590 RRM RRM (RNA recogniti 99.0 2.6E-09 5.5E-14 76.4 8.2 67 2-77 5-74 (74)
96 KOG0105 Alternative splicing f 99.0 1E-09 2.2E-14 91.4 5.9 76 126-207 6-83 (241)
97 KOG0117 Heterogeneous nuclear 99.0 7E-09 1.5E-13 96.9 11.7 75 125-204 82-161 (506)
98 KOG0149 Predicted RNA-binding 98.9 1.7E-09 3.6E-14 93.5 6.5 76 126-206 10-90 (247)
99 KOG0108 mRNA cleavage and poly 98.9 1.8E-09 3.8E-14 103.6 7.4 70 3-81 25-98 (435)
100 KOG0108 mRNA cleavage and poly 98.9 2.2E-09 4.7E-14 103.0 7.7 76 127-208 19-99 (435)
101 COG0724 RNA-binding proteins ( 98.9 4.2E-09 9.2E-14 94.6 9.2 74 126-205 115-193 (306)
102 KOG0113 U1 small nuclear ribon 98.9 5.9E-09 1.3E-13 92.9 9.6 78 125-208 100-182 (335)
103 KOG0131 Splicing factor 3b, su 98.9 2E-09 4.3E-14 89.5 6.1 74 126-205 9-87 (203)
104 smart00361 RRM_1 RNA recogniti 98.9 3.2E-09 6.9E-14 76.7 6.5 56 142-201 2-69 (70)
105 KOG0146 RNA-binding protein ET 98.9 3.3E-09 7.2E-14 93.1 6.8 84 125-211 18-105 (371)
106 KOG0415 Predicted peptidyl pro 98.8 6E-09 1.3E-13 94.7 6.3 84 120-208 233-320 (479)
107 KOG4660 Protein Mei2, essentia 98.8 3.3E-09 7.3E-14 101.7 2.3 168 3-207 82-250 (549)
108 KOG4454 RNA binding protein (R 98.7 9.4E-09 2E-13 87.9 3.2 129 5-194 18-153 (267)
109 KOG0153 Predicted RNA-binding 98.7 4.6E-08 1E-12 88.9 7.5 74 126-206 228-302 (377)
110 KOG0112 Large RNA-binding prot 98.6 2.8E-08 6.1E-13 99.9 5.5 151 3-208 379-532 (975)
111 KOG4660 Protein Mei2, essentia 98.5 4.7E-08 1E-12 93.9 3.6 70 125-200 74-143 (549)
112 KOG4208 Nucleolar RNA-binding 98.5 1.7E-07 3.7E-12 79.7 6.5 66 7-81 60-130 (214)
113 KOG1365 RNA-binding protein Fu 98.5 4.3E-07 9.4E-12 83.6 9.0 183 4-210 169-365 (508)
114 KOG1457 RNA binding protein (c 98.5 1.2E-06 2.7E-11 75.3 10.4 84 126-211 34-122 (284)
115 KOG0415 Predicted peptidyl pro 98.5 1.1E-07 2.4E-12 86.6 4.2 70 2-80 245-318 (479)
116 KOG0120 Splicing factor U2AF, 98.4 1.1E-06 2.4E-11 85.2 9.6 171 6-211 185-373 (500)
117 KOG4454 RNA binding protein (R 98.4 1.6E-07 3.4E-12 80.5 2.4 74 125-204 8-84 (267)
118 KOG0533 RRM motif-containing p 98.4 9.2E-07 2E-11 78.5 7.3 72 1-81 88-162 (243)
119 KOG4208 Nucleolar RNA-binding 98.4 1.1E-06 2.4E-11 74.8 7.2 72 132-207 53-130 (214)
120 KOG0153 Predicted RNA-binding 98.3 9.8E-07 2.1E-11 80.4 6.0 64 7-80 239-302 (377)
121 KOG4661 Hsp27-ERE-TATA-binding 98.3 1.8E-06 4E-11 83.1 7.9 79 125-208 404-486 (940)
122 KOG4212 RNA-binding protein hn 98.3 1.5E-06 3.4E-11 81.3 6.9 73 125-203 535-607 (608)
123 KOG4210 Nuclear localization s 98.3 8.8E-07 1.9E-11 81.2 5.2 159 6-208 98-265 (285)
124 KOG0151 Predicted splicing reg 98.3 1.5E-06 3.3E-11 85.7 6.9 82 123-209 171-259 (877)
125 KOG2193 IGF-II mRNA-binding pr 98.3 2.2E-07 4.8E-12 86.4 1.0 146 4-206 9-156 (584)
126 KOG0226 RNA-binding proteins [ 98.3 1.2E-06 2.6E-11 76.8 5.2 143 14-204 117-267 (290)
127 KOG4849 mRNA cleavage factor I 98.2 4.8E-05 1E-09 69.6 14.4 78 125-205 77-161 (498)
128 PF11608 Limkain-b1: Limkain b 98.2 7.9E-06 1.7E-10 59.8 7.6 67 132-207 6-77 (90)
129 KOG0129 Predicted RNA-binding 98.2 2.9E-05 6.2E-10 74.5 13.3 149 4-185 267-432 (520)
130 KOG0533 RRM motif-containing p 98.2 6.3E-06 1.4E-10 73.3 8.3 80 126-208 81-163 (243)
131 KOG0128 RNA-binding protein SA 98.1 6.2E-07 1.4E-11 90.1 1.1 133 3-206 674-814 (881)
132 KOG0106 Alternative splicing f 98.1 2.2E-06 4.8E-11 74.6 3.8 69 131-206 4-72 (216)
133 KOG4661 Hsp27-ERE-TATA-binding 98.1 6.4E-06 1.4E-10 79.5 6.3 66 7-81 416-485 (940)
134 KOG4211 Splicing factor hnRNP- 98.1 0.00031 6.8E-09 67.2 17.3 178 4-194 111-348 (510)
135 KOG1548 Transcription elongati 98.1 1.1E-05 2.5E-10 73.6 7.3 72 130-205 136-219 (382)
136 KOG0116 RasGAP SH3 binding pro 98.1 1.9E-05 4.2E-10 75.7 9.1 72 131-206 291-366 (419)
137 KOG0226 RNA-binding proteins [ 97.9 4.4E-06 9.5E-11 73.3 2.1 73 1-82 194-271 (290)
138 KOG4209 Splicing factor RNPS1, 97.9 3E-05 6.4E-10 69.0 7.1 76 125-207 100-180 (231)
139 PF08777 RRM_3: RNA binding mo 97.9 3.8E-05 8.3E-10 59.9 6.3 58 128-189 3-60 (105)
140 KOG0116 RasGAP SH3 binding pro 97.8 3E-05 6.5E-10 74.3 5.5 67 3-79 295-365 (419)
141 KOG1855 Predicted RNA-binding 97.8 1.5E-05 3.2E-10 74.7 2.6 68 125-194 230-314 (484)
142 KOG1924 RhoA GTPase effector D 97.7 0.00026 5.7E-09 71.1 10.4 14 139-152 361-374 (1102)
143 KOG4205 RNA-binding protein mu 97.7 4.7E-05 1E-09 70.4 4.8 65 126-194 6-75 (311)
144 COG5175 MOT2 Transcriptional r 97.6 0.00019 4.2E-09 65.4 6.6 73 131-206 117-202 (480)
145 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00025 5.3E-09 54.6 6.1 70 131-206 9-91 (100)
146 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00018 3.9E-09 48.8 4.7 50 131-183 4-53 (53)
147 PF11608 Limkain-b1: Limkain b 97.5 0.00033 7E-09 51.5 5.9 56 11-81 21-77 (90)
148 KOG1996 mRNA splicing factor [ 97.5 0.00021 4.5E-09 64.1 5.9 63 10-81 300-367 (378)
149 KOG0151 Predicted splicing reg 97.4 0.00019 4.2E-09 71.2 5.3 70 3-81 181-257 (877)
150 KOG1996 mRNA splicing factor [ 97.4 0.00032 6.9E-09 62.9 5.9 64 142-208 300-368 (378)
151 KOG2416 Acinus (induces apopto 97.4 0.00029 6.2E-09 68.7 5.7 88 123-214 441-529 (718)
152 KOG0115 RNA-binding protein p5 97.3 0.00058 1.2E-08 60.3 6.8 91 45-192 5-98 (275)
153 COG5175 MOT2 Transcriptional r 97.3 0.00044 9.5E-09 63.2 5.5 59 14-81 138-203 (480)
154 KOG4209 Splicing factor RNPS1, 97.3 0.00035 7.5E-09 62.2 4.7 68 4-81 109-180 (231)
155 KOG2314 Translation initiation 97.3 0.0004 8.6E-09 67.4 5.3 59 11-77 79-140 (698)
156 PF08952 DUF1866: Domain of un 97.2 0.0013 2.9E-08 53.7 7.3 77 123-207 24-107 (146)
157 KOG2202 U2 snRNP splicing fact 97.2 0.00015 3.3E-09 63.9 1.9 61 11-81 83-148 (260)
158 KOG4676 Splicing factor, argin 97.1 0.00032 7E-09 65.2 3.2 174 4-192 15-214 (479)
159 PF08777 RRM_3: RNA binding mo 97.1 0.00086 1.9E-08 52.3 5.0 50 6-57 11-60 (105)
160 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.00081 1.8E-08 45.5 4.2 39 11-51 15-53 (53)
161 PF04059 RRM_2: RNA recognitio 97.1 0.004 8.7E-08 47.6 8.1 72 4-81 9-87 (97)
162 KOG3152 TBP-binding protein, a 96.9 0.00051 1.1E-08 60.6 2.5 64 131-194 77-156 (278)
163 KOG4307 RNA binding protein RB 96.9 0.0028 6E-08 63.2 6.9 69 128-202 869-942 (944)
164 KOG1995 Conserved Zn-finger pr 96.8 0.001 2.2E-08 61.5 3.7 79 126-208 64-155 (351)
165 KOG0128 RNA-binding protein SA 96.8 5.9E-05 1.3E-09 76.2 -4.7 137 11-191 587-734 (881)
166 PF04059 RRM_2: RNA recognitio 96.8 0.0098 2.1E-07 45.5 8.5 77 131-208 4-88 (97)
167 PF08952 DUF1866: Domain of un 96.8 0.0046 9.9E-08 50.6 6.5 57 11-81 51-107 (146)
168 KOG4307 RNA binding protein RB 96.8 0.0029 6.3E-08 63.0 6.3 65 3-76 874-942 (944)
169 KOG1855 Predicted RNA-binding 96.7 0.001 2.3E-08 62.6 3.1 59 2-60 237-312 (484)
170 KOG1365 RNA-binding protein Fu 96.6 0.066 1.4E-06 50.2 13.6 117 33-185 101-225 (508)
171 KOG2202 U2 snRNP splicing fact 96.6 0.0013 2.8E-08 58.2 2.4 62 143-208 83-149 (260)
172 PF04847 Calcipressin: Calcipr 96.6 0.0056 1.2E-07 52.6 6.2 65 140-209 7-73 (184)
173 KOG4285 Mitotic phosphoprotein 96.5 0.0067 1.5E-07 54.9 6.5 73 128-208 197-269 (350)
174 PF04847 Calcipressin: Calcipr 96.5 0.0065 1.4E-07 52.2 5.8 66 7-83 6-73 (184)
175 PF15023 DUF4523: Protein of u 96.4 0.015 3.2E-07 47.2 6.9 75 123-204 83-159 (166)
176 KOG2314 Translation initiation 96.2 0.0079 1.7E-07 58.7 5.5 72 126-203 58-140 (698)
177 KOG4574 RNA-binding protein (c 96.0 0.0049 1.1E-07 62.7 3.1 65 7-80 309-373 (1007)
178 PF08675 RNA_bind: RNA binding 95.9 0.039 8.4E-07 40.7 6.8 56 126-188 9-64 (87)
179 KOG4210 Nuclear localization s 95.9 0.004 8.6E-08 57.3 1.9 69 3-81 192-264 (285)
180 KOG4574 RNA-binding protein (c 95.9 0.0058 1.3E-07 62.2 3.0 74 133-209 303-376 (1007)
181 PF05172 Nup35_RRM: Nup53/35/4 95.8 0.032 6.8E-07 43.0 6.0 60 9-79 18-90 (100)
182 PF15023 DUF4523: Protein of u 95.8 0.03 6.5E-07 45.4 6.1 54 13-79 107-160 (166)
183 PF08675 RNA_bind: RNA binding 95.7 0.031 6.7E-07 41.2 5.4 44 9-56 21-64 (87)
184 KOG1995 Conserved Zn-finger pr 95.6 0.011 2.4E-07 54.8 3.6 69 4-81 74-154 (351)
185 KOG4676 Splicing factor, argin 95.6 0.017 3.8E-07 54.0 4.8 73 127-204 8-87 (479)
186 PF07576 BRAP2: BRCA1-associat 95.1 0.09 2E-06 41.2 6.7 55 5-59 22-79 (110)
187 KOG4849 mRNA cleavage factor I 95.0 1.3 2.8E-05 41.3 14.8 53 7-59 91-149 (498)
188 KOG3152 TBP-binding protein, a 94.9 0.016 3.6E-07 51.3 2.2 55 5-59 83-153 (278)
189 KOG2893 Zn finger protein [Gen 94.8 0.28 6.2E-06 43.1 9.5 22 278-299 160-181 (341)
190 KOG0112 Large RNA-binding prot 94.7 0.0072 1.6E-07 62.0 -0.5 76 125-205 371-449 (975)
191 PF10309 DUF2414: Protein of u 94.4 0.17 3.7E-06 35.2 6.0 53 128-186 7-62 (62)
192 KOG4285 Mitotic phosphoprotein 94.0 0.079 1.7E-06 48.2 4.5 47 10-59 210-256 (350)
193 KOG2416 Acinus (induces apopto 93.6 0.035 7.5E-07 54.7 1.7 70 7-84 455-525 (718)
194 KOG2193 IGF-II mRNA-binding pr 93.4 0.078 1.7E-06 50.3 3.6 74 132-210 5-79 (584)
195 KOG2068 MOT2 transcription fac 93.4 0.036 7.7E-07 51.1 1.4 74 131-207 80-163 (327)
196 PF07576 BRAP2: BRCA1-associat 92.7 1.8 3.9E-05 33.9 9.8 62 133-194 18-82 (110)
197 KOG2068 MOT2 transcription fac 92.5 0.05 1.1E-06 50.2 0.9 64 9-81 91-163 (327)
198 PF11767 SET_assoc: Histone ly 92.4 0.45 9.8E-06 33.6 5.5 51 139-194 11-61 (66)
199 KOG2318 Uncharacterized conser 92.2 0.59 1.3E-05 46.2 7.8 78 124-204 172-305 (650)
200 PF03880 DbpA: DbpA RNA bindin 92.1 0.94 2E-05 32.7 7.1 68 128-204 2-74 (74)
201 PF10309 DUF2414: Protein of u 91.5 0.55 1.2E-05 32.7 5.0 44 7-54 15-62 (62)
202 PF07292 NID: Nmi/IFP 35 domai 91.4 0.68 1.5E-05 34.7 5.8 82 37-166 1-83 (88)
203 PF03880 DbpA: DbpA RNA bindin 91.3 0.87 1.9E-05 32.8 6.2 58 7-78 12-74 (74)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 91.0 0.36 7.7E-06 41.2 4.5 79 130-208 9-99 (176)
205 KOG2135 Proteins containing th 90.7 0.14 3E-06 49.3 1.8 62 8-81 385-446 (526)
206 PF11767 SET_assoc: Histone ly 88.9 1.6 3.4E-05 30.9 5.6 48 7-59 11-58 (66)
207 KOG0804 Cytoplasmic Zn-finger 88.2 2.4 5.1E-05 40.9 8.0 67 126-194 74-143 (493)
208 KOG0129 Predicted RNA-binding 88.0 1.4 3E-05 43.1 6.5 60 125-187 258-327 (520)
209 PF10567 Nab6_mRNP_bdg: RNA-re 87.7 1.5 3.3E-05 39.9 6.1 77 126-207 15-108 (309)
210 KOG2135 Proteins containing th 86.9 0.42 9E-06 46.2 2.2 62 141-208 386-447 (526)
211 KOG2591 c-Mpl binding protein, 84.3 4.6 0.0001 40.0 7.9 60 132-194 179-247 (684)
212 KOG0115 RNA-binding protein p5 82.4 1.1 2.4E-05 40.0 2.7 54 4-57 39-95 (275)
213 KOG0804 Cytoplasmic Zn-finger 81.3 2.5 5.5E-05 40.8 4.8 53 7-59 85-140 (493)
214 KOG2318 Uncharacterized conser 73.5 11 0.00024 37.7 6.8 60 1-60 179-294 (650)
215 KOG2236 Uncharacterized conser 72.5 72 0.0016 31.2 11.8 15 142-156 244-258 (483)
216 KOG2253 U1 snRNP complex, subu 71.5 3.2 7E-05 41.9 2.7 62 126-194 40-101 (668)
217 KOG2891 Surface glycoprotein [ 69.2 1.2 2.7E-05 40.2 -0.6 52 8-59 173-247 (445)
218 PF14111 DUF4283: Domain of un 67.0 7.4 0.00016 31.7 3.7 38 127-164 103-141 (153)
219 PF08156 NOP5NT: NOP5NT (NUC12 66.2 2.3 5.1E-05 30.1 0.4 39 11-55 27-65 (67)
220 COG5638 Uncharacterized conser 65.6 23 0.00051 33.9 6.9 37 167-204 259-295 (622)
221 PF03467 Smg4_UPF3: Smg-4/UPF3 65.5 5.6 0.00012 33.9 2.7 57 3-59 14-80 (176)
222 KOG2236 Uncharacterized conser 65.2 61 0.0013 31.7 9.7 13 171-183 319-331 (483)
223 KOG4019 Calcineurin-mediated s 62.8 5.7 0.00012 33.8 2.2 60 12-81 31-90 (193)
224 KOG0119 Splicing factor 1/bran 60.0 1.4E+02 0.0031 29.6 11.2 17 37-53 207-223 (554)
225 PRK07400 30S ribosomal protein 58.4 63 0.0014 30.3 8.6 42 5-47 10-57 (318)
226 TIGR02542 B_forsyth_147 Bacter 56.7 34 0.00075 26.9 5.3 20 11-30 16-35 (145)
227 KOG2591 c-Mpl binding protein, 55.7 23 0.0005 35.4 5.2 46 7-55 186-233 (684)
228 KOG2891 Surface glycoprotein [ 52.7 2.8 6.1E-05 37.9 -1.3 66 140-205 173-266 (445)
229 PF10567 Nab6_mRNP_bdg: RNA-re 49.7 2.2E+02 0.0047 26.4 13.4 161 6-189 25-214 (309)
230 KOG2375 Protein interacting wi 48.8 99 0.0021 32.4 8.7 11 37-47 295-305 (756)
231 KOG3671 Actin regulatory prote 47.9 3E+02 0.0064 27.5 18.7 47 10-57 92-138 (569)
232 PF11411 DNA_ligase_IV: DNA li 46.7 13 0.00028 22.8 1.3 16 7-22 20-35 (36)
233 PF08734 GYD: GYD domain; Int 46.6 96 0.0021 23.2 6.4 46 142-187 22-68 (91)
234 PF08544 GHMP_kinases_C: GHMP 45.4 81 0.0018 22.4 5.9 46 141-187 35-80 (85)
235 KOG2253 U1 snRNP complex, subu 45.3 10 0.00022 38.4 1.1 51 4-59 48-98 (668)
236 KOG4019 Calcineurin-mediated s 45.1 18 0.00039 30.8 2.4 59 144-206 31-89 (193)
237 PF02714 DUF221: Domain of unk 44.0 25 0.00053 32.7 3.5 21 37-57 1-21 (325)
238 PF12993 DUF3877: Domain of un 41.4 36 0.00078 28.7 3.6 36 6-43 107-143 (175)
239 PF15513 DUF4651: Domain of un 40.5 53 0.0012 22.8 3.7 18 143-160 9-26 (62)
240 PF08544 GHMP_kinases_C: GHMP 39.2 1.1E+02 0.0024 21.7 5.7 44 11-55 37-80 (85)
241 KOG4410 5-formyltetrahydrofola 39.2 71 0.0015 29.3 5.3 46 131-177 333-378 (396)
242 PHA03378 EBNA-3B; Provisional 38.8 2.4E+02 0.0052 29.3 9.4 11 8-18 327-337 (991)
243 KOG4672 Uncharacterized conser 38.8 1.9E+02 0.0041 28.1 8.2 21 37-57 42-62 (487)
244 PF13046 DUF3906: Protein of u 37.4 22 0.00048 24.8 1.5 36 4-39 26-63 (64)
245 PRK14548 50S ribosomal protein 36.1 1.1E+02 0.0024 22.7 5.1 46 7-52 31-79 (84)
246 PF08734 GYD: GYD domain; Int 35.2 1.5E+02 0.0033 22.0 6.0 47 10-56 22-69 (91)
247 KOG4357 Uncharacterized conser 34.7 2.4E+02 0.0052 22.6 7.2 43 147-193 98-140 (164)
248 PRK14548 50S ribosomal protein 32.9 1.7E+02 0.0036 21.7 5.6 52 135-186 27-81 (84)
249 PRK11901 hypothetical protein; 31.9 84 0.0018 29.4 4.8 48 140-188 254-306 (327)
250 KOG4213 RNA-binding protein La 30.6 83 0.0018 26.9 4.1 48 8-55 118-171 (205)
251 KOG4264 Nucleo-cytoplasmic pro 29.1 1.9E+02 0.0041 29.0 6.7 9 168-176 443-451 (694)
252 PF15063 TC1: Thyroid cancer p 27.4 34 0.00075 24.7 1.1 49 133-186 30-78 (79)
253 KOG4483 Uncharacterized conser 26.9 1.1E+02 0.0023 29.6 4.5 55 126-185 391-446 (528)
254 TIGR03636 L23_arch archaeal ri 26.3 2.1E+02 0.0046 20.8 5.1 46 7-52 24-72 (77)
255 CHL00123 rps6 ribosomal protei 25.0 95 0.0021 23.5 3.3 50 4-53 14-81 (97)
256 COG5180 PBP1 Protein interacti 24.3 5.1E+02 0.011 25.7 8.6 10 290-299 583-592 (654)
257 TIGR01743 purR_Bsub pur operon 23.7 1.8E+02 0.004 26.5 5.4 48 7-55 37-86 (268)
258 PF03468 XS: XS domain; Inter 23.3 61 0.0013 25.5 2.0 42 8-49 29-71 (116)
259 PRK11901 hypothetical protein; 23.1 1E+02 0.0023 28.8 3.7 47 9-56 255-306 (327)
260 PF02714 DUF221: Domain of unk 22.7 89 0.0019 28.9 3.4 32 169-205 1-32 (325)
261 PRK09213 pur operon repressor; 22.3 1.9E+02 0.0041 26.5 5.3 48 7-55 39-88 (271)
262 cd04889 ACT_PDH-BS-like C-term 22.3 2.3E+02 0.0049 18.3 5.7 44 140-183 10-55 (56)
263 cd04908 ACT_Bt0572_1 N-termina 22.1 2.6E+02 0.0056 18.9 7.8 46 140-185 13-59 (66)
264 PF11823 DUF3343: Protein of u 21.7 1.2E+02 0.0027 21.3 3.2 24 36-59 3-26 (73)
265 PRK02302 hypothetical protein; 21.5 3.6E+02 0.0078 20.2 6.0 60 11-88 18-77 (89)
266 PRK11230 glycolate oxidase sub 21.3 1.6E+02 0.0035 29.4 5.0 48 10-57 203-257 (499)
267 PRK08559 nusG transcription an 20.8 2.4E+02 0.0053 23.1 5.3 33 23-56 36-68 (153)
268 COG1308 EGD2 Transcription fac 20.6 1.5E+02 0.0032 23.6 3.6 33 4-56 79-111 (122)
269 PRK10905 cell division protein 20.5 2.2E+02 0.0049 26.6 5.3 47 140-187 256-307 (328)
No 1
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=262.65 Aligned_cols=214 Identities=43% Similarity=0.614 Sum_probs=179.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+..|.||-|.|+++|++||.|.+|+.+.|+.+++|+|+|.|.++|..|...|+|+.|| .++|+|||+||+...
T Consensus 157 ~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIy-------ngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 157 NMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIY-------NGCCTLRIDFSKLTD 229 (492)
T ss_pred cceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCccc-------CceeEEEeehhhccc
Confidence 4578999999999999999999999999999999999999999999999999999998 588999999999999
Q ss_pred ccccccCccccCCCCCCCCCCC-----------------------cccCccCCccccCCCCCCCCC--CcEEEEEeccCC
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAP-----------------------SAIDASGQLSVGLDGKKLEPE--SNVLLASIENMQ 137 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~--~~~l~v~v~nl~ 137 (331)
+.++++++++|||+++.++.++ .+++...+.+.+.++ +.+.+ +.+|+|+.. ..
T Consensus 230 LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~-~~~~~~~n~vllvsnl-n~ 307 (492)
T KOG1190|consen 230 LNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADG-KIESPSANVVLLVSNL-NE 307 (492)
T ss_pred ceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhccccc-ccccCCCceEEEEecC-ch
Confidence 9999999999999999999872 112222222223332 22333 567774322 24
Q ss_pred CCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcccccCCCC
Q 020065 138 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDR 217 (331)
Q Consensus 138 ~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~ 217 (331)
+.||.|.|+.+|+.||+|.||+|+.+++. +|+|+|.|...|..|++.|+|++|+++ .|+|.|||+.++..+++.++
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~SKH~~vqlp~egq~ 383 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLSKHTNVQLPREGQE 383 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceecCc---eEEEeeccCccccCCCCCCc
Confidence 78999999999999999999999988764 699999999999999999999999998 99999999999999987666
Q ss_pred C----CCCCCCCCCCC
Q 020065 218 S----RDYTLPSTPMV 229 (331)
Q Consensus 218 ~----~~~~~~~~~~~ 229 (331)
. +||.+..++.+
T Consensus 384 d~glT~dy~~spLhrf 399 (492)
T KOG1190|consen 384 DQGLTKDYGNSPLHRF 399 (492)
T ss_pred cccccccCCCCchhhc
Confidence 5 55555555544
No 2
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=268.74 Aligned_cols=223 Identities=36% Similarity=0.489 Sum_probs=180.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+.|+||+||-+|+.+||+|+++++++++ ++|||||.|.++|...|..+.. ++++++|+.|+|+||.+++
T Consensus 35 nlp~e~tE~elI~Lg~pFG~vtn~~~lkGk--nQAflem~d~~sAvtmv~~y~~-------~~p~lr~~~~yiq~sn~~~ 105 (492)
T KOG1190|consen 35 NLPWEVTEEELISLGLPFGKVTNLLMLKGK--NQAFLEMADEESAVTMVNYYTS-------VTPVLRGQPIYIQYSNHSE 105 (492)
T ss_pred cCCccccHHHHHHhcccccceeeeeeeccc--hhhhhhhcchhhhhheeecccc-------cCccccCcceeehhhhHHH
Confidence 457899999999999999999999999854 5899999999999997766553 4677899999999999988
Q ss_pred ccccccCccccC---CCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE
Q 020065 83 LSVKFQSHRSRD---YTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159 (331)
Q Consensus 83 l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~ 159 (331)
+..+.+....|. |.... ........-+ . ..........++.+|.+.|+|+.+.||.|.|+++|++||.|.+|.
T Consensus 106 lkt~s~p~q~r~~~vy~~~s-~~q~~~~~~s--~-~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIi 181 (492)
T KOG1190|consen 106 LKTDSQPNQIRGQAVYQAVS-SVQEIVLPLS--A-SAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKII 181 (492)
T ss_pred HhccCchhhhhhhhHHhhhh-cccccccccc--c-ccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEE
Confidence 877644322221 11000 0000000000 0 011112344578999999999999999999999999999999999
Q ss_pred EEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020065 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 239 (331)
Q Consensus 160 i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 239 (331)
.|.|+.+|+|+|+|.|.+.|..|+.+|+|++|+++ ||+|||+|||..+++++++++++||||++.||.++.+|++....
T Consensus 182 TF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~ 260 (492)
T KOG1190|consen 182 TFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLM 260 (492)
T ss_pred EEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhh
Confidence 99999999999999999999999999999999997 99999999999999999999999999999999998888765443
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.7e-33 Score=275.33 Aligned_cols=185 Identities=34% Similarity=0.479 Sum_probs=159.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHh--CCCCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL--DGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~l--ng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++||++|+++|++||+|.+|++++ +++||||+|.+.|+|.+||+.| |+..| .|+.|+|+||+
T Consensus 8 ~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l---------~g~~l~v~~s~ 76 (481)
T TIGR01649 8 RNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYI---------RGQPAFFNYST 76 (481)
T ss_pred cCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceE---------cCeEEEEEecC
Confidence 46789999999999999999999999887 4579999999999999999986 55555 89999999998
Q ss_pred cccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE
Q 020065 80 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159 (331)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~ 159 (331)
++++...... +. .....++++.|+|.||++++|+++|+++|++||.|++|+
T Consensus 77 ~~~~~~~~~~----~~-------------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~ 127 (481)
T TIGR01649 77 SQEIKRDGNS----DF-------------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIV 127 (481)
T ss_pred CcccccCCCC----cc-------------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEE
Confidence 7754322110 00 001236788888999999999999999999999999999
Q ss_pred EEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcccccCCCCCCCCCCCCCC
Q 020065 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 227 (331)
Q Consensus 160 i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~~~~~~~~~ 227 (331)
|+++++..+|||+|.+.++|.+|++.|||..|+++ ||+|+|.|++...++++++++++|||+++.++
T Consensus 128 i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 128 TFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred EEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 99877534599999999999999999999999987 78999999999999999999999999999887
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.98 E-value=7.4e-31 Score=258.08 Aligned_cols=196 Identities=31% Similarity=0.497 Sum_probs=159.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
++..+.+|+++|+++|+.||+|.+|++++++.+++|||+|.+.++|.+|++.|||+.|+ .++++|+|+||+.+
T Consensus 102 ~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~-------~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 102 ENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIY-------NGCCTLKIEYAKPT 174 (481)
T ss_pred cCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCccc-------CCceEEEEEEecCC
Confidence 46688999999999999999999999988665578999999999999999999999995 24579999999999
Q ss_pred cccccccCccccCCCCCCCCCC-CcccC-------cc--------------CCc-----------cccC-----------
Q 020065 82 DLSVKFQSHRSRDYTNPYLPVA-PSAID-------AS--------------GQL-----------SVGL----------- 117 (331)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~--------------~~~-----------~~~~----------- 117 (331)
.+.++.+..++|||+++.++.. +...+ .. +.. +.+.
T Consensus 175 ~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (481)
T TIGR01649 175 RLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPA 254 (481)
T ss_pred CceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCccc
Confidence 9999988899999999877510 10000 00 000 0000
Q ss_pred ------------CCCCCCCCCcEEEEEeccCCC-CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHH
Q 020065 118 ------------DGKKLEPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 184 (331)
Q Consensus 118 ------------~~~~~~~~~~~l~v~v~nl~~-~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~ 184 (331)
.+....+++++|+ |.||++ .+|+++|+++|+.||.|++|+|++.++|+ |||+|.+.++|..|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~l~--v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~-afV~f~~~~~A~~Ai~ 331 (481)
T TIGR01649 255 YEAAPLAPAISSYGPAGGGPGSVLM--VSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKET-ALIEMADPYQAQLALT 331 (481)
T ss_pred ccccccCccccccCCCCCCCCCEEE--EeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCE-EEEEECCHHHHHHHHH
Confidence 0011134677888 889997 69999999999999999999999887776 9999999999999999
Q ss_pred HhcCCcccCCCceEEEEEeecCCCcc
Q 020065 185 ALEGHCIYDGGFCKLHISYSRHTDLS 210 (331)
Q Consensus 185 ~lng~~i~~~~~~~l~v~~ak~~~~~ 210 (331)
.|||..|+|+ .|+|++++.....
T Consensus 332 ~lng~~l~g~---~l~v~~s~~~~~~ 354 (481)
T TIGR01649 332 HLNGVKLFGK---PLRVCPSKQQNVQ 354 (481)
T ss_pred HhCCCEECCc---eEEEEEccccccc
Confidence 9999999998 9999999876543
No 5
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.9e-31 Score=226.91 Aligned_cols=166 Identities=19% Similarity=0.370 Sum_probs=138.2
Q ss_pred CCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
-+|+.|+|++.|.+||+|++.+++| .++|+||||.|-..++|++||+.|||+-| ++|.||.+|+++|
T Consensus 72 ~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl---------G~R~IRTNWATRK 142 (321)
T KOG0148|consen 72 PEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL---------GRRTIRTNWATRK 142 (321)
T ss_pred hhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee---------ccceeeccccccC
Confidence 4899999999999999999999888 56889999999999999999999999987 8999999999987
Q ss_pred cccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE
Q 020065 82 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 161 (331)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~ 161 (331)
... .+.+...|.... + ...+.+++++ ++|+...+|||+|++.|+.||.|.+|+||
T Consensus 143 p~e---~n~~~ltfdeV~--------N------------Qssp~NtsVY--~G~I~~~lte~~mr~~Fs~fG~I~EVRvF 197 (321)
T KOG0148|consen 143 PSE---MNGKPLTFDEVY--------N------------QSSPDNTSVY--VGNIASGLTEDLMRQTFSPFGPIQEVRVF 197 (321)
T ss_pred ccc---cCCCCccHHHHh--------c------------cCCCCCceEE--eCCcCccccHHHHHHhcccCCcceEEEEe
Confidence 511 111111110000 0 0123466666 99998889999999999999999999999
Q ss_pred ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcc
Q 020065 162 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 210 (331)
Q Consensus 162 ~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~ 210 (331)
+.++ +|||+|++.|+|++||..|||.+|.+. .+|+.|.|.....
T Consensus 198 k~qG--YaFVrF~tkEaAahAIv~mNntei~G~---~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 198 KDQG--YAFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCSWGKEGDDG 241 (321)
T ss_pred cccc--eEEEEecchhhHHHHHHHhcCceeCce---EEEEeccccCCCC
Confidence 9986 599999999999999999999999999 9999999877643
No 6
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.97 E-value=6.5e-30 Score=230.32 Aligned_cols=179 Identities=32% Similarity=0.466 Sum_probs=158.7
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccccc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVK 86 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~ 86 (331)
.++|.+|.+..+.||.|.-+.++..+ .+|+|||+|++.|+.+|..-....++ +.|..--++||+.+.+...
T Consensus 42 ~v~eadl~eal~~fG~i~yvt~~P~~--r~alvefedi~~akn~Vnfaa~n~i~-------i~gq~Al~NyStsq~i~R~ 112 (494)
T KOG1456|consen 42 GVVEADLVEALSNFGPIAYVTCMPHK--RQALVEFEDIEGAKNCVNFAADNQIY-------IAGQQALFNYSTSQCIERP 112 (494)
T ss_pred ccchhHHHHHHhcCCceEEEEecccc--ceeeeeeccccchhhheehhccCccc-------ccCchhhcccchhhhhccC
Confidence 58899999999999999999988854 36999999999999999877766776 5888888999987765332
Q ss_pred ccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCC
Q 020065 87 FQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 166 (331)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g 166 (331)
- .....++++|+++|.|..+.||.|.|+.++...|.|.+|+||+++ |
T Consensus 113 g--------------------------------~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-g 159 (494)
T KOG1456|consen 113 G--------------------------------DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-G 159 (494)
T ss_pred C--------------------------------CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-c
Confidence 1 111235899999999999999999999999999999999999995 6
Q ss_pred eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcccccCCCCCCCCCCCCCCC
Q 020065 167 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 228 (331)
Q Consensus 167 ~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~~~~~~~~~~~~~~~~~~ 228 (331)
.+|+|||++.+.|++|+++|||..|+.+ ||+|+|+|+|+++++|.+|+..+||||.|.+++
T Consensus 160 VQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~ 220 (494)
T KOG1456|consen 160 VQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRG 220 (494)
T ss_pred eeeEEeechhHHHHHHHhhccccccccc-ceeEEEEecCcceeeeeecCCccccccCCCCCC
Confidence 7899999999999999999999999998 999999999999999999999999999998844
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.8e-28 Score=229.91 Aligned_cols=153 Identities=17% Similarity=0.259 Sum_probs=130.6
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++||++|+++|+.||+|++|+|++ +++++||||+|.+.|+|++||+.|||..| .+++|+|.++
T Consensus 114 nLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l---------~gr~i~V~~a 184 (346)
T TIGR01659 114 YLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV---------RNKRLKVSYA 184 (346)
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc---------CCceeeeecc
Confidence 5689999999999999999999998875 34668999999999999999999999987 7999999987
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
+...... .+..|| |.||+.++|+++|+++|++||+|+++
T Consensus 185 ~p~~~~~---------------------------------------~~~~lf--V~nLp~~vtee~L~~~F~~fG~V~~v 223 (346)
T TIGR01659 185 RPGGESI---------------------------------------KDTNLY--VTNLPRTITDDQLDTIFGKYGQIVQK 223 (346)
T ss_pred ccccccc---------------------------------------ccceeE--EeCCCCcccHHHHHHHHHhcCCEEEE
Confidence 6431100 134466 89999999999999999999999999
Q ss_pred EEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 159 AMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 159 ~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
+|++++ +|+ |||+|++.++|.+||+.||+..|.++ ...|+|.|++..
T Consensus 224 ~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V~~a~~~ 275 (346)
T TIGR01659 224 NILRDKLTGTPRGV-AFVRFNKREEAQEAISALNNVIPEGG-SQPLTVRLAEEH 275 (346)
T ss_pred EEeecCCCCccceE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCcc
Confidence 987653 355 99999999999999999999988764 348999998754
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=1.2e-27 Score=240.12 Aligned_cols=172 Identities=16% Similarity=0.240 Sum_probs=134.7
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCC----CceEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG----PCTLRI 75 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~----g~~i~v 75 (331)
+.++++|+|+|+++|+.||+|+++.+.+ ++++++|||+|.+.++|.+|++.|||+.| . |+.|+|
T Consensus 185 nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i---------~~~~~g~~l~v 255 (562)
T TIGR01628 185 NLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKI---------GLAKEGKKLYV 255 (562)
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEe---------cccccceeeEe
Confidence 4578999999999999999999998886 34567999999999999999999999987 6 899999
Q ss_pred EeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCe
Q 020065 76 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 155 (331)
Q Consensus 76 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V 155 (331)
.++..+................ .......+..|+ |+||++.+|+++|+++|+.||.|
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~---------------------~~~~~~~~~~l~--V~nl~~~~~~~~L~~~F~~~G~i 312 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQ---------------------ERKMKAQGVNLY--VKNLDDTVTDEKLRELFSECGEI 312 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhh---------------------hhhcccCCCEEE--EeCCCCccCHHHHHHHHHhcCCe
Confidence 9877542211000000000000 000011245566 89999999999999999999999
Q ss_pred eEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcc
Q 020065 156 QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 210 (331)
Q Consensus 156 ~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~ 210 (331)
++++++.+. +|+ |||+|.+.++|.+|+..|||..|.++ .|+|.|++.++.+
T Consensus 313 ~~~~i~~d~~g~~~g~-gfV~f~~~~~A~~A~~~~~g~~~~gk---~l~V~~a~~k~~~ 367 (562)
T TIGR01628 313 TSAKVMLDEKGVSRGF-GFVCFSNPEEANRAVTEMHGRMLGGK---PLYVALAQRKEQR 367 (562)
T ss_pred EEEEEEECCCCCcCCe-EEEEeCCHHHHHHHHHHhcCCeeCCc---eeEEEeccCcHHH
Confidence 999987643 566 99999999999999999999999998 9999999866543
No 9
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=4.9e-26 Score=209.73 Aligned_cols=190 Identities=17% Similarity=0.222 Sum_probs=139.2
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+-|+.||+|.-||++.|+|-++++|+ +.+++||||+|.+.|+|++||+.||+.+| -.|+.|.|+.|-.
T Consensus 92 PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Ei--------r~GK~igvc~Sva 163 (506)
T KOG0117|consen 92 PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEI--------RPGKLLGVCVSVA 163 (506)
T ss_pred CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccc--------cCCCEeEEEEeee
Confidence 55999999999999999999998887 56788999999999999999999999999 3899999988764
Q ss_pred c-cccccc-------------------------------cCccccCCC-------------CCCCCCCCcccCccC-Ccc
Q 020065 81 T-DLSVKF-------------------------------QSHRSRDYT-------------NPYLPVAPSAIDASG-QLS 114 (331)
Q Consensus 81 ~-~l~~~~-------------------------------~~~~~~~~~-------------~~~~~~~~~~~~~~~-~~~ 114 (331)
+ +|-+.. +..++|.|. +-.+.. ..++-.+ ...
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~--g~~klwgn~~t 241 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP--GKIKLWGNAIT 241 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC--CceeecCCcce
Confidence 3 221110 001122111 000000 0000000 000
Q ss_pred cc----CCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCc
Q 020065 115 VG----LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 190 (331)
Q Consensus 115 ~~----~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~ 190 (331)
+. ..+...+.-++|..+||.||..++|+|.|+++|+.||.|++|+.+++ +|||+|.++++|.+|++.|||++
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCce
Confidence 00 00111122355666669999999999999999999999999998865 59999999999999999999999
Q ss_pred ccCCCceEEEEEeecCCCccc
Q 020065 191 IYDGGFCKLHISYSRHTDLSI 211 (331)
Q Consensus 191 i~~~~~~~l~v~~ak~~~~~~ 211 (331)
|.|. .|.|.+||+.+...
T Consensus 318 ldG~---~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 318 LDGS---PIEVTLAKPVDKKK 335 (506)
T ss_pred ecCc---eEEEEecCChhhhc
Confidence 9999 99999999887543
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.94 E-value=3.1e-26 Score=225.87 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=131.0
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.+|++|+++|+++|++||.|.+|.+.+ ++++|||||+|.+.++|.+|++.|||+.| .|+.|+|++.
T Consensus 114 nLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i---------~GR~IkV~rp 184 (612)
T TIGR01645 114 SISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---------GGRNIKVGRP 184 (612)
T ss_pred CCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEE---------ecceeeeccc
Confidence 3578999999999999999999998865 45788999999999999999999999987 8999999865
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
........ ..+... ......+.|| |+||+.++++++|+++|+.||.|+++
T Consensus 185 ~~~p~a~~-----~~~~~~-----------------------~~~~~~~rLf--VgnLp~~vteedLk~lFs~FG~I~sv 234 (612)
T TIGR01645 185 SNMPQAQP-----IIDMVQ-----------------------EEAKKFNRIY--VASVHPDLSETDIKSVFEAFGEIVKC 234 (612)
T ss_pred cccccccc-----cccccc-----------------------ccccccceEE--eecCCCCCCHHHHHHHHhhcCCeeEE
Confidence 42211000 000000 0001134566 99999999999999999999999999
Q ss_pred EEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 159 AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 159 ~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
+|.++ ++|| |||+|.+.++|.+||+.|||..|.|+ .|+|.++...
T Consensus 235 rl~~D~~tgksKGf-GFVeFe~~e~A~kAI~amNg~elgGr---~LrV~kAi~p 284 (612)
T TIGR01645 235 QLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKCVTP 284 (612)
T ss_pred EEEecCCCCCcCCe-EEEEECCHHHHHHHHHHhCCCeeCCe---EEEEEecCCC
Confidence 98763 3676 99999999999999999999999999 9999988644
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=2.5e-25 Score=210.80 Aligned_cols=195 Identities=15% Similarity=0.210 Sum_probs=134.4
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+++.+.++|+++|+++|++||.|..+.++. +.++++|||+|.+.++|.+|++.|||..+. ..+++|+|.
T Consensus 94 v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~-------g~~~~i~v~ 166 (352)
T TIGR01661 94 VSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS-------GCTEPITVK 166 (352)
T ss_pred ECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC-------CCceeEEEE
Confidence 356788999999999999999999888765 235789999999999999999999998772 234678898
Q ss_pred eeccccccccc--cC----ccccCCCCCCCC-----CCCcccC----------------------------ccCCccc--
Q 020065 77 YSAHTDLSVKF--QS----HRSRDYTNPYLP-----VAPSAID----------------------------ASGQLSV-- 115 (331)
Q Consensus 77 ~s~~~~l~~~~--~~----~~~~~~~~~~~~-----~~~~~~~----------------------------~~~~~~~-- 115 (331)
++......... .. ....+.....+. ....... .......
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 88643211100 00 000000000000 0000000 0000000
Q ss_pred ------------cCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHH
Q 020065 116 ------------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQT 178 (331)
Q Consensus 116 ------------~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~ 178 (331)
..........+.+|| |.||+..+++++|+++|++||.|++++|+++. +|+ |||+|.+.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lf--V~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~-aFV~F~~~~~ 323 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIF--VYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY-GFVSMTNYDE 323 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce-EEEEECCHHH
Confidence 000000112234677 89999999999999999999999999998653 677 9999999999
Q ss_pred HHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 179 AVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 179 A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
|.+|++.|||..|.|+ .|+|+|+..+.
T Consensus 324 A~~Ai~~lnG~~~~gr---~i~V~~~~~~~ 350 (352)
T TIGR01661 324 AAMAILSLNGYTLGNR---VLQVSFKTNKA 350 (352)
T ss_pred HHHHHHHhCCCEECCe---EEEEEEccCCC
Confidence 9999999999999999 99999986543
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.6e-25 Score=212.06 Aligned_cols=154 Identities=18% Similarity=0.281 Sum_probs=130.8
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++||++|+++|+.||+|.+|.+++ +++++||||+|.+.++|.+||+.|||+.| .|++|+|.|+
T Consensus 10 nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l---------~g~~i~v~~a 80 (352)
T TIGR01661 10 YLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL---------QNKTIKVSYA 80 (352)
T ss_pred CCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE---------CCeeEEEEee
Confidence 4588999999999999999999998876 34668999999999999999999999987 8999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
+.+.-.. ..+.|| |.||+..+++++|+++|+.||.|..+
T Consensus 81 ~~~~~~~---------------------------------------~~~~l~--v~~l~~~~~~~~l~~~f~~~G~i~~~ 119 (352)
T TIGR01661 81 RPSSDSI---------------------------------------KGANLY--VSGLPKTMTQHELESIFSPFGQIITS 119 (352)
T ss_pred ccccccc---------------------------------------ccceEE--ECCccccCCHHHHHHHHhccCCEEEE
Confidence 6432110 134566 99999999999999999999999999
Q ss_pred EEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 159 AMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 159 ~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
++..++ +|+ |||+|++.++|.+|++.|||..+.+. ...|+|+|++...
T Consensus 120 ~~~~~~~~~~~~g~-~fv~f~~~~~A~~ai~~l~g~~~~g~-~~~i~v~~a~~~~ 172 (352)
T TIGR01661 120 RILSDNVTGLSKGV-GFIRFDKRDEADRAIKTLNGTTPSGC-TEPITVKFANNPS 172 (352)
T ss_pred EEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCccCCC-ceeEEEEECCCCC
Confidence 886542 555 99999999999999999999988764 3478999986554
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.92 E-value=1.9e-24 Score=217.05 Aligned_cols=152 Identities=16% Similarity=0.234 Sum_probs=128.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
-+.++++||++|+++|++||.|.+|++.+ +++++||||+|.+.++|.+|++.||+..| .|+.|+|.|
T Consensus 6 gnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i---------~gk~i~i~~ 76 (562)
T TIGR01628 6 GDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL---------GGKPIRIMW 76 (562)
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeeEEeec
Confidence 35688999999999999999999998876 34668999999999999999999999887 799999999
Q ss_pred eccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 78 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 78 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
++.+....+ .....|| |.||+.++++++|+++|++||.|++
T Consensus 77 s~~~~~~~~-------------------------------------~~~~~vf--V~nLp~~~~~~~L~~~F~~~G~i~~ 117 (562)
T TIGR01628 77 SQRDPSLRR-------------------------------------SGVGNIF--VKNLDKSVDNKALFDTFSKFGNILS 117 (562)
T ss_pred ccccccccc-------------------------------------cCCCceE--EcCCCccCCHHHHHHHHHhcCCcce
Confidence 864321100 0123455 9999999999999999999999999
Q ss_pred EEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 158 IAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 158 v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
|++..+ ++|+ |||+|.+.++|.+|++.|||..+.++ .|.|...+
T Consensus 118 ~~i~~~~~g~skg~-afV~F~~~e~A~~Ai~~lng~~~~~~---~i~v~~~~ 165 (562)
T TIGR01628 118 CKVATDENGKSRGY-GFVHFEKEESAKAAIQKVNGMLLNDK---EVYVGRFI 165 (562)
T ss_pred eEeeecCCCCcccE-EEEEECCHHHHHHHHHHhcccEecCc---eEEEeccc
Confidence 998763 3566 99999999999999999999999988 88886543
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.5e-25 Score=201.07 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=131.2
Q ss_pred CCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
..||+||++||++||.|.+|.++| +.++++|||.|.+.++|.+|+.+|+++... | ....+|.|.|+....
T Consensus 45 t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktl----p--G~~~pvqvk~Ad~E~ 118 (510)
T KOG0144|consen 45 TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTL----P--GMHHPVQVKYADGER 118 (510)
T ss_pred cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhccccc----C--CCCcceeecccchhh
Confidence 679999999999999999999988 347789999999999999999999987542 2 245678888876442
Q ss_pred ccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 162 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~ 162 (331)
.++ ...+.|| |+-|...+||.+++++|++||.|+++.|++
T Consensus 119 er~--------------------------------------~~e~KLF--vg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 119 ERI--------------------------------------VEERKLF--VGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred hcc--------------------------------------ccchhhh--hhhccccccHHHHHHHHHhhCccchhhhee
Confidence 211 1256688 888999999999999999999999999987
Q ss_pred c----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCc
Q 020065 163 K----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 163 ~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~ 209 (331)
+ ++| ||||+|.++|.|..||++|||..-..++..+|.|+|++++.-
T Consensus 159 d~~~~sRG-caFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 159 DPDGLSRG-CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred cccccccc-eeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 4 356 699999999999999999999998888677999999976643
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=8.2e-24 Score=207.31 Aligned_cols=162 Identities=19% Similarity=0.273 Sum_probs=131.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+++ +++++||||+|.+.++|.+||+ |+|..| .|++|.|.+
T Consensus 95 ~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~---------~g~~i~v~~ 164 (457)
T TIGR01622 95 LQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQML---------LGRPIIVQS 164 (457)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEE---------CCeeeEEee
Confidence 46688999999999999999999998876 3467899999999999999995 899988 799999988
Q ss_pred eccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 78 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 78 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
+............. .....+.+++|| |+||+..+|+++|+++|+.||.|.+
T Consensus 165 ~~~~~~~~~~~~~~---------------------------~~~~~p~~~~l~--v~nl~~~~te~~l~~~f~~~G~i~~ 215 (457)
T TIGR01622 165 SQAEKNRAAKAATH---------------------------QPGDIPNFLKLY--VGNLHFNITEQELRQIFEPFGDIED 215 (457)
T ss_pred cchhhhhhhhcccc---------------------------cCCCCCCCCEEE--EcCCCCCCCHHHHHHHHHhcCCeEE
Confidence 76432111000000 000011256777 9999999999999999999999999
Q ss_pred EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 158 IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 158 v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
|.+..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|++.
T Consensus 216 v~~~~d~~~g~~~g~-afV~f~~~e~A~~A~~~l~g~~i~g~---~i~v~~a~~ 265 (457)
T TIGR01622 216 VQLHRDPETGRSKGF-GFIQFHDAEEAKEALEVMNGFELAGR---PIKVGYAQD 265 (457)
T ss_pred EEEEEcCCCCccceE-EEEEECCHHHHHHHHHhcCCcEECCE---EEEEEEccC
Confidence 9987532 455 99999999999999999999999988 999999873
No 16
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.91 E-value=8e-23 Score=184.65 Aligned_cols=194 Identities=27% Similarity=0.383 Sum_probs=159.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+-.|.||.|.|+.++...|.|.+|+|++| ++-+|+|||++.+.|++|.+.|||..|| .++|+|+|+|++..+
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIY-------sGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIY-------SGCCTLKIEYAKPTR 200 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhccccccc-------ccceeEEEEecCcce
Confidence 45689999999999999999999999987 5679999999999999999999999998 588999999999999
Q ss_pred ccccccCccccCCCCCCCCCC-Cc-c--cCccCC--------------------------ccc-------------cCCC
Q 020065 83 LSVKFQSHRSRDYTNPYLPVA-PS-A--IDASGQ--------------------------LSV-------------GLDG 119 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~--------------------------~~~-------------~~~~ 119 (331)
+.+..+....||||.+.+... +. . .+...+ +-. +...
T Consensus 201 lnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~ 280 (494)
T KOG1456|consen 201 LNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYAS 280 (494)
T ss_pred eeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCC
Confidence 999888888899998876321 10 0 000000 000 0001
Q ss_pred CCCCCCCcEEEEEeccCC-CCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 120 KKLEPESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 120 ~~~~~~~~~l~v~v~nl~-~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.....+++++.|+ .|+ ..++.|.|.++|+.||+|++|++++.+.|. |+||+.|..+..+|+..||+..++|+ +
T Consensus 281 p~g~~~g~VmMVy--GLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gt-amVemgd~~aver~v~hLnn~~lfG~---k 354 (494)
T KOG1456|consen 281 PGGGAPGCVMMVY--GLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGT-AMVEMGDAYAVERAVTHLNNIPLFGG---K 354 (494)
T ss_pred CCCCCCCcEEEEE--eccccccchhhhhhhhhhcCceeeEEEeecccce-eEEEcCcHHHHHHHHHHhccCccccc---e
Confidence 1234568899966 454 467999999999999999999999999886 99999999999999999999999999 9
Q ss_pred EEEEeecCCCcc
Q 020065 199 LHISYSRHTDLS 210 (331)
Q Consensus 199 l~v~~ak~~~~~ 210 (331)
|.|++||...+.
T Consensus 355 l~v~~SkQ~~v~ 366 (494)
T KOG1456|consen 355 LNVCVSKQNFVS 366 (494)
T ss_pred EEEeeccccccc
Confidence 999999977654
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.91 E-value=7.9e-24 Score=174.35 Aligned_cols=155 Identities=17% Similarity=0.234 Sum_probs=129.5
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+-.+|++.|++||-+.|.|.+|.+.+ .+.+|||||||.++|+|+.|++.||...+ .||+|+|+.+.
T Consensus 17 ld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL---------YgrpIrv~kas 87 (203)
T KOG0131|consen 17 LDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL---------YGRPIRVNKAS 87 (203)
T ss_pred CCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh---------cCceeEEEecc
Confidence 345789999999999999999999987 33567999999999999999999998887 59999999877
Q ss_pred cccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE-
Q 020065 80 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI- 158 (331)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v- 158 (331)
.....+. .+..|| |+||++.|++..|+++|+.||.+.+.
T Consensus 88 ~~~~nl~--------------------------------------vganlf--vgNLd~~vDe~~L~dtFsafG~l~~~P 127 (203)
T KOG0131|consen 88 AHQKNLD--------------------------------------VGANLF--VGNLDPEVDEKLLYDTFSAFGVLISPP 127 (203)
T ss_pred ccccccc--------------------------------------cccccc--ccccCcchhHHHHHHHHHhccccccCC
Confidence 2211111 134577 99999999999999999999998875
Q ss_pred EEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCccc
Q 020065 159 AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 211 (331)
Q Consensus 159 ~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~ 211 (331)
+|++. .+|+ |||.|++.|.+.+|+.+|||+.+.++ .+.|+|++.++...
T Consensus 128 ~i~rd~~tg~~~~~-g~i~~~sfeasd~ai~s~ngq~l~nr---~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 128 KIMRDPDTGNPKGF-GFINYASFEASDAAIGSMNGQYLCNR---PITVSYAFKKDTKG 181 (203)
T ss_pred cccccccCCCCCCC-eEEechhHHHHHHHHHHhccchhcCC---ceEEEEEEecCCCc
Confidence 45542 2445 99999999999999999999999999 99999998776543
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=182.23 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=129.2
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+-.+|+|||+.||...|+|+++++.+ +.+-+|+||.|.+.+||++||+.|||-.+ ..++|+|+|+..
T Consensus 50 PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL---------Q~KTIKVSyARP 120 (360)
T KOG0145|consen 50 PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL---------QNKTIKVSYARP 120 (360)
T ss_pred ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee---------ccceEEEEeccC
Confidence 44799999999999999999999988 34667899999999999999999999887 799999999986
Q ss_pred ccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEE
Q 020065 81 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 160 (331)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i 160 (331)
+.-.++ ...|+ |..||.+.|..+|.++|++||.|..-+|
T Consensus 121 Ss~~Ik---------------------------------------~aNLY--vSGlPktMtqkelE~iFs~fGrIItSRi 159 (360)
T KOG0145|consen 121 SSDSIK---------------------------------------DANLY--VSGLPKTMTQKELEQIFSPFGRIITSRI 159 (360)
T ss_pred Chhhhc---------------------------------------ccceE--EecCCccchHHHHHHHHHHhhhhhhhhh
Confidence 543332 33466 8899999999999999999999987777
Q ss_pred Ecc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 161 FDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 161 ~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
+.+ ++|. +||.|+.+++|.+||..|||+.--+- ..+|.|+|+...
T Consensus 160 L~dqvtg~srGV-gFiRFDKr~EAe~AIk~lNG~~P~g~-tepItVKFannP 209 (360)
T KOG0145|consen 160 LVDQVTGLSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGC-TEPITVKFANNP 209 (360)
T ss_pred hhhcccceecce-eEEEecchhHHHHHHHhccCCCCCCC-CCCeEEEecCCc
Confidence 543 3565 99999999999999999999986653 569999998655
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.90 E-value=6.5e-23 Score=202.12 Aligned_cols=157 Identities=18% Similarity=0.270 Sum_probs=126.1
Q ss_pred CCCCCCcHHHHHHhhcccCc-eeEEEEee-----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGF-VHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~-V~~i~~~~-----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.+.++|+++|+++|++++. |++++++. +++++||||+|.++++|.+|++.|+...+. +.|+.|+|+
T Consensus 145 NLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~-------l~Gr~I~Vd 217 (578)
T TIGR01648 145 GIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ-------LWGHVIAVD 217 (578)
T ss_pred cCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE-------ecCceEEEE
Confidence 45789999999999999975 45554442 345779999999999999999988754332 379999999
Q ss_pred eeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccC--CC
Q 020065 77 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF--GP 154 (331)
Q Consensus 77 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~f--G~ 154 (331)
|+..+..... .. ....++|| |.||+.++|+|+|+++|+.| |+
T Consensus 218 wA~p~~~~d~----~~------------------------------~~~~k~Lf--VgNL~~~~tee~L~~~F~~f~~G~ 261 (578)
T TIGR01648 218 WAEPEEEVDE----DV------------------------------MAKVKILY--VRNLMTTTTEEIIEKSFSEFKPGK 261 (578)
T ss_pred eecccccccc----cc------------------------------cccccEEE--EeCCCCCCCHHHHHHHHHhcCCCc
Confidence 9875431100 00 01145677 88999999999999999999 99
Q ss_pred eeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCc
Q 020065 155 VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 155 V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~ 209 (331)
|++|++++ ++ |||+|++.++|.+|++.|||..|.++ .|+|+|++..+.
T Consensus 262 I~rV~~~r---gf-AFVeF~s~e~A~kAi~~lnG~~i~Gr---~I~V~~Akp~~~ 309 (578)
T TIGR01648 262 VERVKKIR---DY-AFVHFEDREDAVKAMDELNGKELEGS---EIEVTLAKPVDK 309 (578)
T ss_pred eEEEEeec---Ce-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEccCCCc
Confidence 99998775 45 99999999999999999999999998 999999987654
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=6.2e-22 Score=196.54 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=128.7
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||.|..+.+++ +.++|||||+|.+.++|..|++.|||..| .|+.|+|.++
T Consensus 302 nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~---------~~~~l~v~~a 372 (509)
T TIGR01642 302 NLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT---------GDNKLHVQRA 372 (509)
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEEC
Confidence 5688999999999999999999998876 44678999999999999999999999998 7999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCC--C--------CHHHHHHH
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA--V--------TLDVLHMV 148 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~--v--------t~~~L~~~ 148 (331)
.............. ....... ..... .........++++|+ |.|+... + ..++|+++
T Consensus 373 ~~~~~~~~~~~~~~-~~~~~~~---~~~~~-------~~~~~~~~~~s~v~~--l~N~~~~~~l~~d~~~~~~~edl~~~ 439 (509)
T TIGR01642 373 CVGANQATIDTSNG-MAPVTLL---AKALS-------QSILQIGGKPTKVVQ--LTNLVTGDDLMDDEEYEEIYEDVKTE 439 (509)
T ss_pred ccCCCCCCcccccc-ccccccc---cccch-------hhhccccCCCceEEE--eccCCchhHhcCcchHHHHHHHHHHH
Confidence 74322111000000 0000000 00000 000001123567777 7788431 1 23678999
Q ss_pred HccCCCeeEEEEEccC--------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 149 FSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 149 Fs~fG~V~~v~i~~~~--------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
|++||.|++|+|.+.. .|+ |||+|.+.++|.+|++.|||..|.|+ .|.|.|...
T Consensus 440 f~~~G~v~~v~i~~~~~~~~~~~~~G~-~fV~F~~~e~A~~A~~~lnGr~~~gr---~v~~~~~~~ 501 (509)
T TIGR01642 440 FSKYGPLINIVIPRPNGDRNSTPGVGK-VFLEYADVRSAEKAMEGMNGRKFNDR---VVVAAFYGE 501 (509)
T ss_pred HHhcCCeeEEEeeccCcCCCcCCCcce-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEeCH
Confidence 9999999999997642 255 99999999999999999999999998 999999754
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=2.3e-21 Score=190.03 Aligned_cols=192 Identities=17% Similarity=0.217 Sum_probs=130.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.|
T Consensus 192 ~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i---------~g~~i~v~~ 262 (457)
T TIGR01622 192 GNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFEL---------AGRPIKVGY 262 (457)
T ss_pred cCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEE---------CCEEEEEEE
Confidence 46788999999999999999999998875 24568999999999999999999999887 899999999
Q ss_pred ecccccccccc----Cc-----cccCCCC------------------CCCCCCCc---ccCccC---------C------
Q 020065 78 SAHTDLSVKFQ----SH-----RSRDYTN------------------PYLPVAPS---AIDASG---------Q------ 112 (331)
Q Consensus 78 s~~~~l~~~~~----~~-----~~~~~~~------------------~~~~~~~~---~~~~~~---------~------ 112 (331)
+.......... .. ....... ...+.... .+.... .
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (457)
T TIGR01622 263 AQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATG 342 (457)
T ss_pred ccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccc
Confidence 76321110000 00 0000000 00000000 000000 0
Q ss_pred --ccccCCCCC----CCCCCcEEEEEeccCCCCCC----------HHHHHHHHccCCCeeEEEEEcc-CCCeeEEEEcCC
Q 020065 113 --LSVGLDGKK----LEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPD 175 (331)
Q Consensus 113 --~~~~~~~~~----~~~~~~~l~v~v~nl~~~vt----------~~~L~~~Fs~fG~V~~v~i~~~-~~g~~afV~f~~ 175 (331)
......... ....+++|+ |.|+....+ .++|++.|++||.|++|.|.+. ..|+ +||+|.+
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~l~--l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~-~fV~F~~ 419 (457)
T TIGR01622 343 ALAIMARNSFVPSTNNNLATTCLV--LSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGK-IYLKFSS 419 (457)
T ss_pred ccccccCCCCCCcccCCCCCcEEE--EecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCcee-EEEEECC
Confidence 000000000 123466777 778855443 3689999999999999999844 4555 9999999
Q ss_pred HHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 176 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 176 ~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
.++|.+|++.|||..+.|+ .|.|.|.....
T Consensus 420 ~e~A~~A~~~lnGr~f~gr---~i~~~~~~~~~ 449 (457)
T TIGR01622 420 VDAALAAFQALNGRYFGGK---MITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHHhcCcccCCe---EEEEEEEcHHH
Confidence 9999999999999999998 99999976443
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.87 E-value=1.5e-21 Score=192.45 Aligned_cols=146 Identities=17% Similarity=0.213 Sum_probs=120.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+.+.++||++|+++|++||.|.+|++++ +++++||||+|.+.|+|++||+.|||..| ..|+.|.|..|.
T Consensus 65 nLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i--------~~Gr~l~V~~S~ 136 (578)
T TIGR01648 65 KIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEI--------RPGRLLGVCISV 136 (578)
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCee--------cCCccccccccc
Confidence 5678999999999999999999998876 45778999999999999999999999887 257777665432
Q ss_pred cccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCC-eeEE
Q 020065 80 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKI 158 (331)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~-V~~v 158 (331)
.++.|| |.||+.++|+++|++.|++++. |+++
T Consensus 137 ---------------------------------------------~~~rLF--VgNLP~~~TeeeL~eeFskv~egvv~v 169 (578)
T TIGR01648 137 ---------------------------------------------DNCRLF--VGGIPKNKKREEILEEFSKVTEGVVDV 169 (578)
T ss_pred ---------------------------------------------cCceeE--eecCCcchhhHHHHHHhhcccCCceEE
Confidence 134577 8999999999999999999974 5555
Q ss_pred EEEc------cCCCeeEEEEcCCHHHHHHHHHHhcCC--cccCCCceEEEEEeecCC
Q 020065 159 AMFD------KNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 159 ~i~~------~~~g~~afV~f~~~~~A~~Ai~~lng~--~i~~~~~~~l~v~~ak~~ 207 (331)
.++. +++|| |||+|++.++|.+|+..|+.. .|.++ .|+|+|+...
T Consensus 170 Iv~~~~~~kgKnRGF-AFVeF~s~edAa~AirkL~~gki~l~Gr---~I~VdwA~p~ 222 (578)
T TIGR01648 170 IVYHSAADKKKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH---VIAVDWAEPE 222 (578)
T ss_pred EEeccccccCccCce-EEEEcCCHHHHHHHHHHhhccceEecCc---eEEEEeeccc
Confidence 5542 34677 999999999999999988643 46777 9999998653
No 23
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=3.3e-21 Score=191.35 Aligned_cols=178 Identities=17% Similarity=0.184 Sum_probs=124.9
Q ss_pred CCCCCCCcHHHHHHhhccc------------CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCC
Q 020065 2 CLTLSLLKVIFILQVFSAF------------GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~f------------G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~ 69 (331)
.+.++++|+++|+++|+.| +.|.++.+.+ .++||||+|.+.|+|..|| .|||..| .
T Consensus 181 gnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al-~l~g~~~---------~ 248 (509)
T TIGR01642 181 GGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAM-ALDSIIY---------S 248 (509)
T ss_pred eCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhh-cCCCeEe---------e
Confidence 5778999999999999975 3445554443 5679999999999999999 5999877 7
Q ss_pred CceEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHH
Q 020065 70 PCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVF 149 (331)
Q Consensus 70 g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~F 149 (331)
|+.|+|...+......................... ............+.|| |+||+..+|+++|+++|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~--v~nlp~~~~~~~l~~~f 316 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVE----------KLVNSTTVLDSKDRIY--IGNLPLYLGEDQIKELL 316 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccc----------cccccccCCCCCCEEE--EeCCCCCCCHHHHHHHH
Confidence 89999975442110000000000000000000000 0000000112345777 99999999999999999
Q ss_pred ccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 150 SAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 150 s~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
+.||.|..+.|++. ++|+ |||+|.+.++|..|++.|||..|+++ .|+|.++...
T Consensus 317 ~~~G~i~~~~~~~~~~~g~~~g~-afv~f~~~~~a~~A~~~l~g~~~~~~---~l~v~~a~~~ 375 (509)
T TIGR01642 317 ESFGDLKAFNLIKDIATGLSKGY-AFCEYKDPSVTDVAIAALNGKDTGDN---KLHVQRACVG 375 (509)
T ss_pred HhcCCeeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECccC
Confidence 99999999988753 3566 99999999999999999999999998 9999998643
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=7.6e-22 Score=173.31 Aligned_cols=140 Identities=19% Similarity=0.257 Sum_probs=128.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+-++++.+|+.||++||+|.++.|+| +||||..+|...|..||..|+|.+| .|..|+|+-|+.+.
T Consensus 9 NLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtL---------hg~nInVeaSksKs 75 (346)
T KOG0109|consen 9 NLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTL---------HGVNINVEASKSKS 75 (346)
T ss_pred CCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhccccee---------cceEEEEEeccccC
Confidence 5677999999999999999999999987 6999999999999999999999998 89999999888662
Q ss_pred ccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 162 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~ 162 (331)
. .+.+|+ |+|+.+.++.++|+..|++||.|.+++|.+
T Consensus 76 k-----------------------------------------~stkl~--vgNis~tctn~ElRa~fe~ygpviecdivk 112 (346)
T KOG0109|consen 76 K-----------------------------------------ASTKLH--VGNISPTCTNQELRAKFEKYGPVIECDIVK 112 (346)
T ss_pred C-----------------------------------------Cccccc--cCCCCccccCHHHhhhhcccCCceeeeeec
Confidence 1 256677 999999999999999999999999999988
Q ss_pred cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 163 KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 163 ~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
+ ++||+|+-.++|..||..|||..+.|+ .|+|.+|.
T Consensus 113 d----y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~st 148 (346)
T KOG0109|consen 113 D----YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQLST 148 (346)
T ss_pred c----eeEEEEeeccchHHHHhcccccccccc---eeeeeeec
Confidence 5 699999999999999999999999999 99999874
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.8e-20 Score=176.98 Aligned_cols=148 Identities=20% Similarity=0.227 Sum_probs=129.0
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeec-CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 84 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~-~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~ 84 (331)
.+|||++|+++|+++|.|.+|++.+. .+-+||||.|.+.++|.+|++.||...+ .|++|||-||.+...
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~---------~~~~~rim~s~rd~~- 77 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVL---------KGKPIRIMWSQRDPS- 77 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCccc---------CCcEEEeehhccCCc-
Confidence 68999999999999999999987662 2667999999999999999999998877 899999999876521
Q ss_pred ccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC
Q 020065 85 VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 164 (331)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~ 164 (331)
. |+|.||+..+|..+|+++|+.||+|++|++.++.
T Consensus 78 -------------------------------------------~--~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~ 112 (369)
T KOG0123|consen 78 -------------------------------------------L--VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE 112 (369)
T ss_pred -------------------------------------------e--eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC
Confidence 1 5599999999999999999999999999998765
Q ss_pred CC--eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcccc
Q 020065 165 GG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIK 212 (331)
Q Consensus 165 ~g--~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~~ 212 (331)
.| .. ||+|++.++|.+|++.|||..+.++ .|.|.....+..+..
T Consensus 113 ~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 113 NGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLFERKEEREA 158 (369)
T ss_pred CCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeeccchhhhcc
Confidence 43 23 9999999999999999999999999 999987766655443
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.6e-19 Score=156.41 Aligned_cols=186 Identities=18% Similarity=0.274 Sum_probs=129.2
Q ss_pred CCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
-.+|..||+++|++||.|...+++- +-+++-+||.|...++|+.||+.|||..-. ....+|.|.|++..
T Consensus 137 ktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~-------g~tepItVKFannP 209 (360)
T KOG0145|consen 137 KTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS-------GCTEPITVKFANNP 209 (360)
T ss_pred ccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC-------CCCCCeEEEecCCc
Confidence 4689999999999999986555443 446778999999999999999999998641 34568999999743
Q ss_pred cccc-------cccCccccCCCCCCCCC-CCcccC-----ccCCccccC---CC---------CCCCCCCcEEEEEeccC
Q 020065 82 DLSV-------KFQSHRSRDYTNPYLPV-APSAID-----ASGQLSVGL---DG---------KKLEPESNVLLASIENM 136 (331)
Q Consensus 82 ~l~~-------~~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~---~~---------~~~~~~~~~l~v~v~nl 136 (331)
.-.. -+.+ ..|++..+.--. .....+ ...+++..+ ++ .......-++| |-||
T Consensus 210 sq~t~~a~ls~ly~s-p~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciF--vYNL 286 (360)
T KOG0145|consen 210 SQKTNQALLSQLYQS-PARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIF--VYNL 286 (360)
T ss_pred ccccchhhhHHhhcC-ccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEE--EEec
Confidence 1111 1111 123333221000 000000 001111100 00 01111244777 6699
Q ss_pred CCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 137 QYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 137 ~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
..+.+|..|+++|+.||.|+.|+|+++- +|| +||.+.+.++|+.||..|||+.+.++ .|.|+|..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGf-gFVtMtNYdEAamAi~sLNGy~lg~r---vLQVsFKt 356 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGF-GFVTMTNYDEAAMAIASLNGYRLGDR---VLQVSFKT 356 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccce-eEEEecchHHHHHHHHHhcCccccce---EEEEEEec
Confidence 9999999999999999999999998742 677 99999999999999999999999999 99999964
No 27
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.83 E-value=2.9e-19 Score=152.87 Aligned_cols=185 Identities=22% Similarity=0.362 Sum_probs=133.2
Q ss_pred CCcHHHHHH----hhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 7 LLKVIFILQ----VFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 7 ~vtee~L~~----lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.|..++|+. ||++||+|.+|+.++ .+.+|+|||.|.+.+.|..|++.|+|..| -|+.++|+||+.+
T Consensus 20 kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF---------ygK~mriqyA~s~ 90 (221)
T KOG4206|consen 20 KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF---------YGKPMRIQYAKSD 90 (221)
T ss_pred cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcc---------cCchhheecccCc
Confidence 566677766 999999999999987 44567999999999999999999999988 5999999999865
Q ss_pred cccccc-c---CccccCCCCCCCC--CCCcccCc----cCCccccCCC-CCCCCCCcEEEEEeccCCCCCCHHHHHHHHc
Q 020065 82 DLSVKF-Q---SHRSRDYTNPYLP--VAPSAIDA----SGQLSVGLDG-KKLEPESNVLLASIENMQYAVTLDVLHMVFS 150 (331)
Q Consensus 82 ~l~~~~-~---~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs 150 (331)
.-.+.. . ..+........+. ....+.++ .....++... ....+++.+|| +.|+|..++.+.|..+|+
T Consensus 91 sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf--~~niP~es~~e~l~~lf~ 168 (221)
T KOG4206|consen 91 SDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILF--LTNIPSESESEMLSDLFE 168 (221)
T ss_pred cchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEE--EecCCcchhHHHHHHHHh
Confidence 322111 0 0000000000000 00000000 0000001111 33356788898 889999999999999999
Q ss_pred cCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 151 AFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 151 ~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
.|....+|+++...++. |||+|.+...|..|...|+|..|.-+ .+++|+|++
T Consensus 169 qf~g~keir~i~~~~~i-Afve~~~d~~a~~a~~~lq~~~it~~--~~m~i~~a~ 220 (221)
T KOG4206|consen 169 QFPGFKEIRLIPPRSGI-AFVEFLSDRQASAAQQALQGFKITKK--NTMQITFAK 220 (221)
T ss_pred hCcccceeEeccCCCce-eEEecchhhhhHHHhhhhccceeccC--ceEEecccC
Confidence 99999999998877776 99999999999999999999999833 399999986
No 28
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.4e-20 Score=169.73 Aligned_cols=154 Identities=16% Similarity=0.232 Sum_probs=124.9
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.|++-||.||..|.+||.|++|.+.. .+.|+||||||+-.|.|..|++.|||..+ +||.|+|..-..
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~ml---------GGRNiKVgrPsN 192 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQML---------GGRNIKVGRPSN 192 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccc---------cCccccccCCCC
Confidence 58999999999999999999998865 45678999999999999999999999987 899999985431
Q ss_pred c---cccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 81 T---DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 81 ~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
- .-.++...+..+.| ..|||..+..++++++|+.+|+.||+|++
T Consensus 193 mpQAQpiID~vqeeAk~f---------------------------------nRiYVaSvHpDLSe~DiKSVFEAFG~I~~ 239 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKF---------------------------------NRIYVASVHPDLSETDIKSVFEAFGEIVK 239 (544)
T ss_pred CcccchHHHHHHHHHHhh---------------------------------heEEeeecCCCccHHHHHHHHHhhcceee
Confidence 1 00111111122222 22557888889999999999999999999
Q ss_pred EEEEc-----cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 158 IAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 158 v~i~~-----~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
+++-+ +.+|+ +||||.+..+...||..||-..+.|. .|||.-+
T Consensus 240 C~LAr~pt~~~HkGy-GfiEy~n~qs~~eAiasMNlFDLGGQ---yLRVGk~ 287 (544)
T KOG0124|consen 240 CQLARAPTGRGHKGY-GFIEYNNLQSQSEAIASMNLFDLGGQ---YLRVGKC 287 (544)
T ss_pred EEeeccCCCCCccce-eeEEeccccchHHHhhhcchhhcccc---eEecccc
Confidence 99865 33676 99999999999999999999999998 8888754
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=1e-19 Score=171.61 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=132.6
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
..+|++|.++|.++|+.+|.|..+++.. +..+||+||+|.-.||+.+|+...++..| .||.|+|..+
T Consensus 12 ~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf---------~Gr~l~v~~A 82 (678)
T KOG0127|consen 12 RLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF---------EGRILNVDPA 82 (678)
T ss_pred cCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc---------cceecccccc
Confidence 3589999999999999999999887765 24568999999999999999999999988 8999999999
Q ss_pred ccccccccc--cCccc-cCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCe
Q 020065 79 AHTDLSVKF--QSHRS-RDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 155 (331)
Q Consensus 79 ~~~~l~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V 155 (331)
+++...... ...++ ........ .......-+.-.|. |.|||+.+.+++|..+|+.||.|
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~----------------~~k~~v~~~k~rLI--IRNLPf~~k~~dLk~vFs~~G~V 144 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKR----------------PTKAKVDLPKWRLI--IRNLPFKCKKPDLKNVFSNFGKV 144 (678)
T ss_pred cccccchhcccccchhhhcccccCC----------------cchhhccCccceEE--eecCCcccCcHHHHHHHhhcceE
Confidence 865322110 00000 00000000 00000011123344 89999999999999999999999
Q ss_pred eEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 156 QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 156 ~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
..|.|.++. .|| |||+|.+..+|..|++.+||..|.|+ +|-|+||=
T Consensus 145 ~Ei~IP~k~dgklcGF-aFV~fk~~~dA~~Al~~~N~~~i~gR---~VAVDWAV 194 (678)
T KOG0127|consen 145 VEIVIPRKKDGKLCGF-AFVQFKEKKDAEKALEFFNGNKIDGR---PVAVDWAV 194 (678)
T ss_pred EEEEcccCCCCCccce-EEEEEeeHHHHHHHHHhccCceecCc---eeEEeeec
Confidence 999998755 467 99999999999999999999999999 99999993
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.80 E-value=2.6e-19 Score=173.86 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=134.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecC-------CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKT-------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~-------~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
|.+|+.|.++|..+|+..|.|.+|.|.+++ +.|||||+|.+.|+|.+|++.|+|+.| .|+.|.|
T Consensus 522 Nlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl---------dGH~l~l 592 (725)
T KOG0110|consen 522 NLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL---------DGHKLEL 592 (725)
T ss_pred cCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee---------cCceEEE
Confidence 789999999999999999999999887633 238999999999999999999999988 8999999
Q ss_pred EeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCe
Q 020065 76 TYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 155 (331)
Q Consensus 76 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V 155 (331)
.+|..+...... +.... ......|+ |.|++...+..++++||+.||.|
T Consensus 593 k~S~~k~~~~~g---K~~~~---------------------------kk~~tKIl--VRNipFeAt~rEVr~LF~aFGql 640 (725)
T KOG0110|consen 593 KISENKPASTVG---KKKSK---------------------------KKKGTKIL--VRNIPFEATKREVRKLFTAFGQL 640 (725)
T ss_pred EeccCccccccc---ccccc---------------------------ccccceee--eeccchHHHHHHHHHHHhcccce
Confidence 998822111100 00000 01134677 89999999999999999999999
Q ss_pred eEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCc
Q 020065 156 QKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 156 ~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~ 209 (331)
..|+|.++. +|| |||+|-+..+|.+|+.+|..+.++|+ .|.++|++....
T Consensus 641 ksvRlPKK~~k~a~rGF-~Fv~f~t~~ea~nA~~al~STHlyGR---rLVLEwA~~d~~ 695 (725)
T KOG0110|consen 641 KSVRLPKKIGKGAHRGF-GFVDFLTPREAKNAFDALGSTHLYGR---RLVLEWAKSDNT 695 (725)
T ss_pred eeeccchhhcchhhccc-eeeeccCcHHHHHHHHhhcccceech---hhheehhccchH
Confidence 999998762 677 99999999999999999999999999 999999986653
No 31
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=4e-19 Score=154.53 Aligned_cols=81 Identities=21% Similarity=0.306 Sum_probs=71.2
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 123 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 123 ~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
.++.+.|| |..||.+..+.+|.+.|-.||.|++.|+|-++ +-| +||.|+++.+|..||.+|||..|.-+
T Consensus 282 GPeGCNlF--IYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCF-GFVSfDNp~SaQaAIqAMNGFQIGMK--- 355 (371)
T KOG0146|consen 282 GPEGCNLF--IYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCF-GFVSFDNPASAQAAIQAMNGFQIGMK--- 355 (371)
T ss_pred CCCcceEE--EEeCchhhccHHHHHHhccccceeeeeeeehhccccccce-eeEecCCchhHHHHHHHhcchhhhhh---
Confidence 45789999 66999999999999999999999999987543 445 99999999999999999999999988
Q ss_pred EEEEEeecCCCc
Q 020065 198 KLHISYSRHTDL 209 (331)
Q Consensus 198 ~l~v~~ak~~~~ 209 (331)
+|+|.+.++++.
T Consensus 356 RLKVQLKRPkda 367 (371)
T KOG0146|consen 356 RLKVQLKRPKDA 367 (371)
T ss_pred hhhhhhcCcccc
Confidence 999998776654
No 32
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.6e-18 Score=162.21 Aligned_cols=190 Identities=20% Similarity=0.247 Sum_probs=131.4
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
|=|.+|.+.+++|..+|+.||.|.+|+|.++ +-.|||||.|....+|..|++.+||..| .||+|.|.|
T Consensus 122 IRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i---------~gR~VAVDW 192 (678)
T KOG0127|consen 122 IRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKI---------DGRPVAVDW 192 (678)
T ss_pred eecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCcee---------cCceeEEee
Confidence 3477899999999999999999999999872 2337899999999999999999999998 899999999
Q ss_pred eccccccccc--------------------cCccccCCCCCCCC-----CCC------------------cccCcc---C
Q 020065 78 SAHTDLSVKF--------------------QSHRSRDYTNPYLP-----VAP------------------SAIDAS---G 111 (331)
Q Consensus 78 s~~~~l~~~~--------------------~~~~~~~~~~~~~~-----~~~------------------~~~~~~---~ 111 (331)
+-.++..... ..++..++..-.-. ... ..++.. +
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 8755432210 11111111110000 000 000000 0
Q ss_pred CccccCCC--C---CCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHH
Q 020065 112 QLSVGLDG--K---KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVV 181 (331)
Q Consensus 112 ~~~~~~~~--~---~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~ 181 (331)
.......+ . .......++| |.||++++|+++|.++|++||.|..+.|+.. +.| +|||+|.+..+|..
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVF--vRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skG-tAFv~Fkt~~~~~~ 349 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVF--VRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKG-TAFVKFKTQIAAQN 349 (678)
T ss_pred cCcccchhccccccccccccceEE--EecCCccccHHHHHHHHHhhccceeEEEEeccCCCCccc-ceEEEeccHHHHHH
Confidence 00000000 0 0011235666 9999999999999999999999999887543 245 59999999999999
Q ss_pred HHHHh-----cC-CcccCCCceEEEEEeec
Q 020065 182 AKEAL-----EG-HCIYDGGFCKLHISYSR 205 (331)
Q Consensus 182 Ai~~l-----ng-~~i~~~~~~~l~v~~ak 205 (331)
||++. .| ..|.|+ .|+|..+=
T Consensus 350 ci~~Aspa~e~g~~ll~GR---~Lkv~~Av 376 (678)
T KOG0127|consen 350 CIEAASPASEDGSVLLDGR---LLKVTLAV 376 (678)
T ss_pred HHHhcCccCCCceEEEecc---EEeeeecc
Confidence 99987 34 556677 99999873
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=5.4e-18 Score=160.17 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=130.0
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+||.+-++|.++|+++|+.||+|.+|++.. ..+++| ||+|.++++|.+|++.|||..+ .++.|+|...
T Consensus 81 i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll---------~~kki~vg~~ 150 (369)
T KOG0123|consen 81 IKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLL---------NGKKIYVGLF 150 (369)
T ss_pred ecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCccc---------CCCeeEEeec
Confidence 588899999999999999999999998877 337788 9999999999999999999876 8999999887
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
..++............+ .. |++.|...+++++.|.+.|+.||.|+.+
T Consensus 151 ~~~~er~~~~~~~~~~~-------------------------------t~--v~vk~~~~~~~~~~l~~~f~~~g~i~s~ 197 (369)
T KOG0123|consen 151 ERKEEREAPLGEYKKRF-------------------------------TN--VYVKNLEEDSTDEELKDLFSAYGSITSV 197 (369)
T ss_pred cchhhhcccccchhhhh-------------------------------hh--hheeccccccchHHHHHhhcccCcceEE
Confidence 76543322111111111 12 3478888899999999999999999999
Q ss_pred EEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 159 AMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 159 ~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
.++++ ++++ +||+|++.++|..|++.||+..+.+. .|.|.-+..
T Consensus 198 ~v~~~~~g~~~~~-gfv~f~~~e~a~~av~~l~~~~~~~~---~~~V~~aqk 245 (369)
T KOG0123|consen 198 AVMRDSIGKSKGF-GFVNFENPEDAKKAVETLNGKIFGDK---ELYVGRAQK 245 (369)
T ss_pred EEeecCCCCCCCc-cceeecChhHHHHHHHhccCCcCCcc---ceeeccccc
Confidence 98764 3555 99999999999999999999988877 888876644
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=8.6e-17 Score=159.27 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=63.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.+.++|+|+|+++|+.||+|.++.+.+ ++++|||||+|.+.++|.+||+.|||.+| +|+.|+|.+
T Consensus 210 gnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~el---------gGr~LrV~k 280 (612)
T TIGR01645 210 ASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL---------GGQYLRVGK 280 (612)
T ss_pred ecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCee---------CCeEEEEEe
Confidence 45678999999999999999999998876 34678999999999999999999999988 899999998
Q ss_pred ecc
Q 020065 78 SAH 80 (331)
Q Consensus 78 s~~ 80 (331)
+..
T Consensus 281 Ai~ 283 (612)
T TIGR01645 281 CVT 283 (612)
T ss_pred cCC
Confidence 763
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=2.4e-17 Score=151.92 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=67.4
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
+....|| |.+||-+.-+.+|.+.|..||.|...++|.++ ....+||.|++..+|..||..|||..|..+ +|
T Consensus 422 peGanlf--iyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~K---rl 496 (510)
T KOG0144|consen 422 PEGANLF--IYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSK---RL 496 (510)
T ss_pred CCcccee--eeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccc---cc
Confidence 4567788 77999999999999999999999999987665 123399999999999999999999999999 89
Q ss_pred EEEeec
Q 020065 200 HISYSR 205 (331)
Q Consensus 200 ~v~~ak 205 (331)
+|.+.+
T Consensus 497 kVQlk~ 502 (510)
T KOG0144|consen 497 KVQLKR 502 (510)
T ss_pred eEEeee
Confidence 998764
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.70 E-value=2.5e-16 Score=149.48 Aligned_cols=191 Identities=16% Similarity=0.164 Sum_probs=130.3
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.-|.+||++|+.+|+.||.|..|.+.+ +.+++||||+|.+.|+|.+|++.|||.+| -|+.|+|..-+
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel---------AGr~ikV~~v~ 356 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL---------AGRLIKVSVVT 356 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee---------cCceEEEEEee
Confidence 457899999999999999999998776 45788999999999999999999999776 89999987644
Q ss_pred cc-cccccccCccccC---CCCCCCCC-C--------------------CcccCccC--CccccCC------C-------
Q 020065 80 HT-DLSVKFQSHRSRD---YTNPYLPV-A--------------------PSAIDASG--QLSVGLD------G------- 119 (331)
Q Consensus 80 ~~-~l~~~~~~~~~~~---~~~~~~~~-~--------------------~~~~~~~~--~~~~~~~------~------- 119 (331)
.+ +...........| -+.-.+.. + ..+..... +.+...+ +
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 22 1100000000000 00000000 0 00000000 0000000 0
Q ss_pred CCCCCCCcEEEEEeccCCCCCC----------HHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 120 KKLEPESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 120 ~~~~~~~~~l~v~v~nl~~~vt----------~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
.....++.+|+ +.|+.+.-| .|++.+.+++||.|..|.+.+.+-| |.||+|.+.+.|..|+.+|||.
T Consensus 437 p~~~i~t~C~l--L~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g-~VYvrc~s~~~A~~a~~alhgr 513 (549)
T KOG0147|consen 437 PAFDIPTQCLL--LSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAG-CVYVRCPSAEAAGTAVKALHGR 513 (549)
T ss_pred cccCCccHHHH--HhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCc-eEEEecCcHHHHHHHHHHHhhh
Confidence 11125678888 778865432 3567788999999999999888865 5999999999999999999999
Q ss_pred cccCCCceEEEEEeecCCCc
Q 020065 190 CIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 190 ~i~~~~~~~l~v~~ak~~~~ 209 (331)
++.++ .|.++|-.....
T Consensus 514 WF~gr---~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 514 WFAGR---MITAKYLPLERY 530 (549)
T ss_pred hhccc---eeEEEEeehhhh
Confidence 99999 999999755443
No 37
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.67 E-value=7.7e-16 Score=131.01 Aligned_cols=182 Identities=20% Similarity=0.232 Sum_probs=119.0
Q ss_pred CCCCcHHHHHHhhccc-CceeEEEEeecCC----CceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 5 LSLLKVIFILQVFSAF-GFVHKITTFEKTA----GFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 5 ~~~vtee~L~~lF~~f-G~V~~i~~~~~~~----~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+-||.-.||++||.+| |--.+.+-+..+. +-.|||+|.+..+|..|+++|||..|.+ -.+.+|+|++++
T Consensus 43 P~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp------E~~stLhiElAK 116 (284)
T KOG1457|consen 43 PNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP------ETGSTLHIELAK 116 (284)
T ss_pred CcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc------ccCceeEeeehh
Confidence 5689999999999999 5433332222211 2579999999999999999999998853 258899999988
Q ss_pred ccccccc--ccC--ccc------------c----CCC-----CCC-C---------CCCCcccCccC--C----cccc--
Q 020065 80 HTDLSVK--FQS--HRS------------R----DYT-----NPY-L---------PVAPSAIDASG--Q----LSVG-- 116 (331)
Q Consensus 80 ~~~l~~~--~~~--~~~------------~----~~~-----~~~-~---------~~~~~~~~~~~--~----~~~~-- 116 (331)
......+ ... ..+ + +.. .+. + ...+.+.+.+. + ++..
T Consensus 117 SNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a~ 196 (284)
T KOG1457|consen 117 SNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANAH 196 (284)
T ss_pred cCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccch
Confidence 5422111 000 000 0 000 000 0 00000000000 0 0000
Q ss_pred ----CCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 117 ----LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 117 ----~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
.++........+|| |.||..+||||+|+++|++|-....++|..+++...|||+|++++.|..|+..|+|..|.
T Consensus 197 l~ks~q~~~~~~acstlf--ianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 197 LEKSSQGGSGARACSTLF--IANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhcccccchhhhhHh--hhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 01112223355788 899999999999999999999999989887776667999999999999999999999875
Q ss_pred CC
Q 020065 193 DG 194 (331)
Q Consensus 193 ~~ 194 (331)
..
T Consensus 275 ~~ 276 (284)
T KOG1457|consen 275 SS 276 (284)
T ss_pred cc
Confidence 43
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.65 E-value=4.2e-16 Score=147.98 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=124.6
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+-.++..+|+++|+.+|.|.+|.++. +++++.|+|||-|.++...|| .|+|+-+ .|.+|.|+.+..
T Consensus 188 a~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl---------lg~pv~vq~sEa 257 (549)
T KOG0147|consen 188 ARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL---------LGVPVIVQLSEA 257 (549)
T ss_pred hhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc---------cCceeEecccHH
Confidence 34688999999999999999998775 457789999999999999999 8999887 799999987663
Q ss_pred ccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEE
Q 020065 81 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 160 (331)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i 160 (331)
......... ....++....+-.-|+ |+||..++++++|+.+|+.||.|+.|.+
T Consensus 258 eknr~a~~s-------------------------~a~~~k~~~~p~~rl~--vgnLHfNite~~lr~ifepfg~Ie~v~l 310 (549)
T KOG0147|consen 258 EKNRAANAS-------------------------PALQGKGFTGPMRRLY--VGNLHFNITEDMLRGIFEPFGKIENVQL 310 (549)
T ss_pred HHHHHHhcc-------------------------ccccccccccchhhhh--hcccccCchHHHHhhhccCcccceeeee
Confidence 322111000 0011111111111255 9999999999999999999999999987
Q ss_pred Ecc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 161 FDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 161 ~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
..+ ++|| +||+|.+.++|.+|++.|||.+|-|+ .|+|+..
T Consensus 311 ~~d~~tG~skgf-Gfi~f~~~~~ar~a~e~lngfelAGr---~ikV~~v 355 (549)
T KOG0147|consen 311 TKDSETGRSKGF-GFITFVNKEDARKALEQLNGFELAGR---LIKVSVV 355 (549)
T ss_pred ccccccccccCc-ceEEEecHHHHHHHHHHhccceecCc---eEEEEEe
Confidence 654 3677 99999999999999999999999999 8998865
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.5e-15 Score=132.60 Aligned_cols=79 Identities=14% Similarity=0.335 Sum_probs=72.1
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc-----cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~-----~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
++.++|+|+.|...|+-+.|++.|.+||+|.+.+|++ |++|+ +||.|.+.++|..||+.|||+.|..+ .||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGY-gFVSf~~k~dAEnAI~~MnGqWlG~R---~IR 135 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGY-GFVSFPNKEDAENAIQQMNGQWLGRR---TIR 135 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccce-eEEeccchHHHHHHHHHhCCeeeccc---eee
Confidence 4578899999999999999999999999999999987 44676 99999999999999999999999999 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
-.||.++.
T Consensus 136 TNWATRKp 143 (321)
T KOG0148|consen 136 TNWATRKP 143 (321)
T ss_pred ccccccCc
Confidence 99996554
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.54 E-value=3.4e-14 Score=117.50 Aligned_cols=76 Identities=17% Similarity=0.340 Sum_probs=68.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
++.|| |.||+.++|+++|+++|++||.|++++|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 34 ~~~lf--VgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGf-aFV~F~~~e~A~~Al~~lng~~i~Gr---~l~ 107 (144)
T PLN03134 34 STKLF--IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF-GFVNFNDEGAATAAISEMDGKELNGR---HIR 107 (144)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence 56677 8899999999999999999999999988753 3566 99999999999999999999999998 999
Q ss_pred EEeecCC
Q 020065 201 ISYSRHT 207 (331)
Q Consensus 201 v~~ak~~ 207 (331)
|++++..
T Consensus 108 V~~a~~~ 114 (144)
T PLN03134 108 VNPANDR 114 (144)
T ss_pred EEeCCcC
Confidence 9998643
No 41
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.1e-13 Score=113.16 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=120.0
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
|.+-||-|.||.+||.+||.|..|.+.. ...-.||||||++..+|+.||..-+|..+ .|+.|+|+|...-
T Consensus 13 NLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdy---------dg~rLRVEfprgg 83 (241)
T KOG0105|consen 13 NLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDY---------DGCRLRVEFPRGG 83 (241)
T ss_pred CCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhccccccc---------CcceEEEEeccCC
Confidence 5678999999999999999999997654 22346899999999999999999999988 8999999998743
Q ss_pred cccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCC--CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE
Q 020065 82 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPE--SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159 (331)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~ 159 (331)
..... ....+..-- . + -...+....++ .....|.|..||.+-++++|+++..+-|.|.-..
T Consensus 84 r~s~~----~~G~y~ggg----r------g---Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfad 146 (241)
T KOG0105|consen 84 RSSSD----RRGSYSGGG----R------G---GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFAD 146 (241)
T ss_pred Ccccc----cccccCCCC----C------C---CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeee
Confidence 21110 000000000 0 0 00000011112 2245566899999999999999999999999888
Q ss_pred EEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 160 i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+.++. .+.|+|...|+-..|+..|+.+.+...
T Consensus 147 v~rDg---~GvV~~~r~eDMkYAvr~ld~~~~~se 178 (241)
T KOG0105|consen 147 VQRDG---VGVVEYLRKEDMKYAVRKLDDQKFRSE 178 (241)
T ss_pred eeccc---ceeeeeeehhhHHHHHHhhccccccCc
Confidence 88874 499999999999999999998876543
No 42
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=134.31 Aligned_cols=183 Identities=20% Similarity=0.230 Sum_probs=128.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++..++|..+|..||.|.+|++.+ .+..|.|+|.+..+|.+|++.|+..-+ ...++++.++...-
T Consensus 392 Nlpa~t~~~elt~~F~~fG~i~rvllp~--~G~~aiv~fl~p~eAr~Afrklaysr~---------k~~plyle~aP~dv 460 (725)
T KOG0110|consen 392 NLPAGTLSEELTEAFLRFGEIGRVLLPP--GGTGAIVEFLNPLEARKAFRKLAYSRF---------KSAPLYLEWAPEDV 460 (725)
T ss_pred cCccccccHHHHHHhhcccccceeecCc--ccceeeeeecCccchHHHHHHhchhhh---------ccCccccccChhhh
Confidence 4578999999999999999999996654 445699999999999999999998776 67888888876543
Q ss_pred ccccccCccccCCCCCCCC-------CCCcccCccCCcccc-------CCCCCCCCCCcEEEEEeccCCCCCCHHHHHHH
Q 020065 83 LSVKFQSHRSRDYTNPYLP-------VAPSAIDASGQLSVG-------LDGKKLEPESNVLLASIENMQYAVTLDVLHMV 148 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~ 148 (331)
+.-. .++.+++..... ...++.+...-.-.. ..........+.|| |.|+..+.|.+.|..+
T Consensus 461 f~~~---pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lf--vkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 461 FTED---PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLF--VKNLNFDTTLEDLEDL 535 (725)
T ss_pred ccCC---ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhh--hhcCCcccchhHHHHH
Confidence 3211 001111100000 000000000000000 00000011112266 8899999999999999
Q ss_pred HccCCCeeEEEEEccC--------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 149 FSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 149 Fs~fG~V~~v~i~~~~--------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
|++.|.|..+.|..+. .|| |||+|.+.++|..|+..|||+.|.|. .|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGf-gFVEF~~~e~A~~a~k~lqgtvldGH---~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGF-GFVEFAKPESAQAALKALQGTVLDGH---KLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccce-eEEEecCHHHHHHHHHHhcCceecCc---eEEEEecc
Confidence 9999999999886543 267 99999999999999999999999999 99999997
No 43
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.6e-14 Score=122.78 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=116.7
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccc
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDL 83 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l 83 (331)
.+|.+.+++|..+|..||.|.+|.+.. +|+||+|.|.-+|..||..|||+.| .+..+.|.++....-
T Consensus 9 ~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l---------~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 9 LPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKEL---------CGERLVVEHARGKRR 75 (216)
T ss_pred cCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCcee---------cceeeeeeccccccc
Confidence 478999999999999999999987753 4799999999999999999999988 555588888773311
Q ss_pred ccccc---Ccc--ccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 84 SVKFQ---SHR--SRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 84 ~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
..... ..+ .+++..+ ....+.|+ +.|+...+.+.+|.+.|+.+|.+..+
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p------------------------~~s~~r~~--~~~~~~r~~~qdl~d~~~~~g~~~~~ 129 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPP------------------------SRTHFRLI--VRNLSLRVSWQDLKDHFRPAGEVTYV 129 (216)
T ss_pred ccCCCCCCCccchhhccCCc------------------------ccccceee--eccchhhhhHHHHhhhhcccCCCchh
Confidence 11000 000 0011000 11245566 78998899999999999999999554
Q ss_pred EEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 159 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 159 ~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
.+ ..++ +||+|++.++|.+|++.|+|..+.+. .|.+.+
T Consensus 130 ~~---~~~~-~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~~~ 167 (216)
T KOG0106|consen 130 DA---RRNF-AFVEFSEQEDAKRALEKLDGKKLNGR---RISVEK 167 (216)
T ss_pred hh---hccc-cceeehhhhhhhhcchhccchhhcCc---eeeecc
Confidence 44 3344 99999999999999999999999987 888843
No 44
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.50 E-value=9.4e-14 Score=95.97 Aligned_cols=56 Identities=36% Similarity=0.590 Sum_probs=51.0
Q ss_pred HHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 13 ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 13 L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
|+++|++||+|.+|.+.+++ +++|||+|.+.++|.+|++.|||..+ .|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~---------~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQF---------NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEE---------TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEC
Confidence 78999999999999998855 47899999999999999999999988 8999999986
No 45
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.49 E-value=1.1e-13 Score=126.93 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=120.0
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
...++|+|.|++.|+.||+|.++++++ +++++++||+|.+.+...+++..-. ..| .|+.|.+..+.
T Consensus 14 isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~-h~~---------dgr~ve~k~av 83 (311)
T KOG4205|consen 14 LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNART-HKL---------DGRSVEPKRAV 83 (311)
T ss_pred cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccc-ccc---------CCccccceecc
Confidence 467999999999999999999999988 5577899999999999999886422 223 67777776655
Q ss_pred cccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE
Q 020065 80 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159 (331)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~ 159 (331)
..+...+.. ...++..|+|+.++.++++++|++.|++||.|.++.
T Consensus 84 ~r~~~~~~~-----------------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~ 128 (311)
T KOG4205|consen 84 SREDQTKVG-----------------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVV 128 (311)
T ss_pred Ccccccccc-----------------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeE
Confidence 443221100 012334455899999999999999999999999887
Q ss_pred EEc-----cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCccc
Q 020065 160 MFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 211 (331)
Q Consensus 160 i~~-----~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~ 211 (331)
++. +.+|| +||.|.+.++..+++. ..-+.|.++ .+.|.-|-+++...
T Consensus 129 ~~~d~~~~~~rgF-gfv~~~~e~sVdkv~~-~~f~~~~gk---~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 129 IMYDKTTSRPRGF-GFVTFDSEDSVDKVTL-QKFHDFNGK---KVEVKRAIPKEVMQ 180 (311)
T ss_pred Eeecccccccccc-eeeEeccccccceecc-cceeeecCc---eeeEeeccchhhcc
Confidence 653 23677 9999999998888776 457788888 88888776655443
No 46
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.48 E-value=1.3e-13 Score=114.08 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=63.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++||++|+++|++||+|.+|.+.+ +++++||||+|.+.|+|++|++.|||..| .|+.|+|++
T Consensus 40 gnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i---------~Gr~l~V~~ 110 (144)
T PLN03134 40 GGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL---------NGRHIRVNP 110 (144)
T ss_pred eCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEe
Confidence 46788999999999999999999998875 34678999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 111 a~~~ 114 (144)
T PLN03134 111 ANDR 114 (144)
T ss_pred CCcC
Confidence 8754
No 47
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=3e-13 Score=93.41 Aligned_cols=56 Identities=38% Similarity=0.611 Sum_probs=51.3
Q ss_pred HHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 145 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 145 L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
|+++|++||+|++|++.+++++ +|||+|.+.++|..|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~-~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRG-FAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTT-EEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 7899999999999999998845 599999999999999999999999988 9999996
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=1.8e-13 Score=98.27 Aligned_cols=66 Identities=27% Similarity=0.419 Sum_probs=59.2
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
|+|.||+.++|+++|+++|+.||.|..+++..+ .+++ |||+|.+.++|.+|++.|||..+.++ .||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~-a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGY-AFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccce-EEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 459999999999999999999999999998874 2344 99999999999999999999999987 664
No 49
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.9e-13 Score=111.52 Aligned_cols=74 Identities=22% Similarity=0.362 Sum_probs=69.0
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
|||+||...+++.+|..+|++||.|..|.|-....|| |||||+|..+|..|+..|+|..|.+. .|+|++++-..
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGf-AFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~G~~ 86 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGF-AFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELSTGRP 86 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCc-eEEeccCcccHHHHHhhcCCccccCc---eEEEEeecCCc
Confidence 4599999999999999999999999999999988888 99999999999999999999999998 99999986443
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=3.9e-12 Score=115.51 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=58.2
Q ss_pred CCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
-|.+|+||+.+|+.||+|.+|.+.+ +..+||+||||.+..+-..||..||=..+ +|.-|||..+-
T Consensus 220 pDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDL---------GGQyLRVGk~v 288 (544)
T KOG0124|consen 220 PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDL---------GGQYLRVGKCV 288 (544)
T ss_pred CCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhc---------ccceEeccccc
Confidence 3899999999999999999999987 45678999999999999999999998776 89999997653
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=3.3e-13 Score=101.73 Aligned_cols=77 Identities=23% Similarity=0.432 Sum_probs=69.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
+++|+ |.|||+.||.|+.+++|.+||.|..|+|-..+ +|. |||.|+++.+|.+|.+.|+|..+.++ .|.|-|
T Consensus 18 nriLy--irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGT-AFVVYedi~dAk~A~dhlsg~n~~~r---yl~vly 91 (124)
T KOG0114|consen 18 NRILY--IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGT-AFVVYEDIFDAKKACDHLSGYNVDNR---YLVVLY 91 (124)
T ss_pred heeEE--EecCCccccHHHHHHHhhcccceEEEEecCccCcCce-EEEEehHhhhHHHHHHHhcccccCCc---eEEEEe
Confidence 67888 99999999999999999999999999986433 565 99999999999999999999999999 999998
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
-...+
T Consensus 92 yq~~~ 96 (124)
T KOG0114|consen 92 YQPED 96 (124)
T ss_pred cCHHH
Confidence 75544
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.42 E-value=8.8e-13 Score=124.10 Aligned_cols=77 Identities=19% Similarity=0.362 Sum_probs=69.4
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
...++|| |.||+.++|+++|+++|+.||.|++|+|+++. +|+ |||+|.+.++|.+|++.|||..|.++ +
T Consensus 105 ~~~~~Lf--VgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGy-aFVeF~~~e~A~~Ai~~LnG~~l~gr---~ 178 (346)
T TIGR01659 105 NSGTNLI--VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGY-AFVDFGSEADSQRAIKNLNGITVRNK---R 178 (346)
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcE-EEEEEccHHHHHHHHHHcCCCccCCc---e
Confidence 4567788 89999999999999999999999999987542 466 99999999999999999999999999 9
Q ss_pred EEEEeecC
Q 020065 199 LHISYSRH 206 (331)
Q Consensus 199 l~v~~ak~ 206 (331)
|+|+|++.
T Consensus 179 i~V~~a~p 186 (346)
T TIGR01659 179 LKVSYARP 186 (346)
T ss_pred eeeecccc
Confidence 99999864
No 53
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.40 E-value=9.2e-12 Score=112.58 Aligned_cols=169 Identities=17% Similarity=0.192 Sum_probs=119.6
Q ss_pred CCCCCCcHHHHHHhhcccCcee--------EEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVH--------KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 71 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~--------~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~ 71 (331)
..+-|||.+++.++|+.+|-|. +|++.+ +.-+|=|+|.|...|+...|++.|++..| +|+
T Consensus 141 gLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~---------rg~ 211 (382)
T KOG1548|consen 141 GLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDEL---------RGK 211 (382)
T ss_pred CCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccc---------cCc
Confidence 4577999999999999999984 566666 34456699999999999999999999988 899
Q ss_pred eEEEEeecccccccccc-----------------CccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEec
Q 020065 72 TLRITYSAHTDLSVKFQ-----------------SHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIE 134 (331)
Q Consensus 72 ~i~v~~s~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~ 134 (331)
.|+|+.++-+...-..- ..+..+|.--. +........+++. +.
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~------------------~~~sk~r~~~tVi--~k 271 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR------------------DDPSKARADRTVI--LK 271 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc------------------cccccccCCcEEE--ee
Confidence 99999887331110000 00111111000 0000111233433 56
Q ss_pred cCCCC----CC-------HHHHHHHHccCCCeeEEEEEccC-CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 135 NMQYA----VT-------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 135 nl~~~----vt-------~~~L~~~Fs~fG~V~~v~i~~~~-~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
|+... -+ .++|++-+++||.|.+|+|+.+. .| .+-|.|.+.++|..||+.|+|+.+.++ +|..+
T Consensus 272 n~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdG-vvtV~f~n~eeA~~ciq~m~GR~fdgR---ql~A~ 347 (382)
T KOG1548|consen 272 NMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDG-VVTVSFRNNEEADQCIQTMDGRWFDGR---QLTAS 347 (382)
T ss_pred ecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCc-eeEEEeCChHHHHHHHHHhcCeeecce---EEEEE
Confidence 66431 12 35677789999999999998654 44 499999999999999999999999998 88877
Q ss_pred ee
Q 020065 203 YS 204 (331)
Q Consensus 203 ~a 204 (331)
..
T Consensus 348 i~ 349 (382)
T KOG1548|consen 348 IW 349 (382)
T ss_pred Ee
Confidence 65
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=6.1e-13 Score=100.31 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=66.3
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
||+.+|+||.|+.++||.+||.|..|++-- +..+|.|||.|+++.+|.+|++.|+|..+ .++-|.|-|.+
T Consensus 23 irNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~---------~~ryl~vlyyq 93 (124)
T KOG0114|consen 23 IRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNV---------DNRYLVVLYYQ 93 (124)
T ss_pred EecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccccc---------CCceEEEEecC
Confidence 699999999999999999999999998854 44567899999999999999999999987 89999999988
Q ss_pred cccc
Q 020065 80 HTDL 83 (331)
Q Consensus 80 ~~~l 83 (331)
..+.
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6543
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.36 E-value=1.3e-12 Score=93.73 Aligned_cols=64 Identities=23% Similarity=0.274 Sum_probs=57.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~ 74 (331)
++-+.++|+++|+++|++||.|..+.+.. ++.+++|||+|.+.++|.+|++.|||..+ .|+.||
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~---------~~~~ir 70 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI---------NGRKIR 70 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred cCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE---------CccCcC
Confidence 46788999999999999999999998877 34567899999999999999999999887 788876
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.1e-12 Score=111.74 Aligned_cols=77 Identities=19% Similarity=0.375 Sum_probs=70.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.++++. |.||+.+.++++|.+||.+||.|.+|.+.+++ +|| |||.|.++++|++||+.|||+-.++- .|
T Consensus 188 D~~tvR--vtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGF-AFVtF~sRddA~rAI~~LnG~gyd~L---IL 261 (270)
T KOG0122|consen 188 DEATVR--VTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGF-AFVTFESRDDAARAIADLNGYGYDNL---IL 261 (270)
T ss_pred ccceeE--EecCccccChhHHHHHhhccCccceeEEEEccccCcccce-EEEEEecHHHHHHHHHHccCcccceE---EE
Confidence 356777 88999999999999999999999999987654 688 99999999999999999999998887 99
Q ss_pred EEEeecCC
Q 020065 200 HISYSRHT 207 (331)
Q Consensus 200 ~v~~ak~~ 207 (331)
+|+|||++
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 57
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=1e-10 Score=115.31 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=70.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
+++|| |+.++.++++.+|.++|+.||+|++|.+....+ ||||++..+.+|.+|+.+|++..+.++ .|+|.|+-
T Consensus 421 SrTLw--vG~i~k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLW--VGGIPKNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAV 493 (894)
T ss_pred eeeee--eccccchhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccce---eeEEeeec
Confidence 67899 999999999999999999999999999888776 899999999999999999999999998 99999995
Q ss_pred CCC
Q 020065 206 HTD 208 (331)
Q Consensus 206 ~~~ 208 (331)
-.-
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 443
No 58
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.31 E-value=1e-11 Score=110.30 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=66.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
.++|| |+||++.+|+++|+++|+.||.|++|.|..++ +|+ |||+|.+.++|..|+. |||..|.++ .|+|.+
T Consensus 4 ~rtVf--VgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~Gf-AFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~ 76 (260)
T PLN03120 4 VRTVK--VSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQI-AYVTFKDPQGAETALL-LSGATIVDQ---SVTITP 76 (260)
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE-EEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEe
Confidence 35666 99999999999999999999999999997653 566 9999999999999995 999999999 999998
Q ss_pred ecC
Q 020065 204 SRH 206 (331)
Q Consensus 204 ak~ 206 (331)
++.
T Consensus 77 a~~ 79 (260)
T PLN03120 77 AED 79 (260)
T ss_pred ccC
Confidence 653
No 59
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=5.2e-12 Score=98.89 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=65.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----C-CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----N-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~-~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|+ |+||...++||+|++||+++|+|.+|.|--+ . -|| |||+|-+.++|..|+..+||..+..+ .|+
T Consensus 36 S~tvy--VgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGF-CFVeyy~~~dA~~AlryisgtrLddr---~ir 109 (153)
T KOG0121|consen 36 SCTVY--VGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGF-CFVEYYSRDDAEDALRYISGTRLDDR---PIR 109 (153)
T ss_pred cceEE--EeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccce-EEEEEecchhHHHHHHHhccCccccc---cee
Confidence 77888 8999999999999999999999999987322 1 467 99999999999999999999999999 999
Q ss_pred EEee
Q 020065 201 ISYS 204 (331)
Q Consensus 201 v~~a 204 (331)
|+|-
T Consensus 110 ~D~D 113 (153)
T KOG0121|consen 110 IDWD 113 (153)
T ss_pred eecc
Confidence 9974
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.29 E-value=9.4e-12 Score=89.76 Aligned_cols=66 Identities=32% Similarity=0.488 Sum_probs=57.2
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
|+|.|||.++++++|+++|+.||.|.++++...+ +++ |||+|.+.++|.+|++.++|..|.|+ .|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~-a~v~f~~~~~a~~al~~~~~~~~~g~---~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGF-AFVEFSSEEDAKRALELLNGKEIDGR---KLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCE-EEEEeCCHHHHHHHHHHCCCcEECCE---EcC
Confidence 4589999999999999999999999999998764 345 99999999999999999999999887 653
No 61
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=2.9e-11 Score=116.47 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=120.6
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+++-++++.+.++.+.||.+....+++ +.+++|||.||.+......|+..|||+.+ ++++|.|+.+-
T Consensus 297 lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l---------gd~~lvvq~A~ 367 (500)
T KOG0120|consen 297 LPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL---------GDKKLVVQRAI 367 (500)
T ss_pred CcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhh---------cCceeEeehhh
Confidence 466789999999999999998877766 46789999999999999999999999998 78999999886
Q ss_pred cccccccccCc-cccCCCCCCCCCCCcccCccCCccccCC-CCCCCCCCcEEEEEeccCCCCCCH-------------HH
Q 020065 80 HTDLSVKFQSH-RSRDYTNPYLPVAPSAIDASGQLSVGLD-GKKLEPESNVLLASIENMQYAVTL-------------DV 144 (331)
Q Consensus 80 ~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~v~nl~~~vt~-------------~~ 144 (331)
........... ....+ +..... ......++.+|. +.|+ ||. |+
T Consensus 368 ~g~~~~~~~~~~~~~~~-----------------~~i~~~~~q~~g~~t~Vl~--L~n~---Vt~deLkdd~EyeeIlEd 425 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQV-----------------PGIPLLMTQMAGIPTEVLC--LTNV---VTPDELKDDEEYEEILED 425 (500)
T ss_pred ccchhccccCCcccccc-----------------ccchhhhcccCCCcchhhh--hhhc---CCHHHhcchHHHHHHHHH
Confidence 44322211100 00000 000000 011123456666 5565 232 34
Q ss_pred HHHHHccCCCeeEEEEEcc-C------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 145 LHMVFSAFGPVQKIAMFDK-N------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 145 L~~~Fs~fG~V~~v~i~~~-~------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
++.-|++||.|..|.|.+. . +-...||||.+.+++++|.++|+|..+.++ ++..+|-.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nR---tVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANR---TVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCc---EEEEEecC
Confidence 5667899999999998654 1 112589999999999999999999999999 99998854
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.1e-11 Score=102.14 Aligned_cols=69 Identities=23% Similarity=0.227 Sum_probs=62.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+...++|+.||+.+|..||.|.+|.+.+. ..+||||||+|..||..|+.+|+|+.| .|..|+|++|+-.
T Consensus 17 nL~~~a~k~eLE~~F~~yG~lrsvWvArn-PPGfAFVEFed~RDA~DAvr~LDG~~~---------cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 17 NLGSRATKRELERAFSKYGPLRSVWVARN-PPGFAFVEFEDPRDAEDAVRYLDGKDI---------CGSRIRVELSTGR 85 (195)
T ss_pred cCCCCcchHHHHHHHHhcCcceeEEEeec-CCCceEEeccCcccHHHHHhhcCCccc---------cCceEEEEeecCC
Confidence 45679999999999999999999998874 456899999999999999999999998 8999999998844
No 63
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.9e-12 Score=107.71 Aligned_cols=80 Identities=18% Similarity=0.403 Sum_probs=71.9
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc-----cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~-----~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.++|+ |+.|.+.||+..|+..|-+||.|..|.|.- +.+|| |||+|+..|+|++||..||+.+|+|+ +|+
T Consensus 10 KrtlY--VGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~Gr---tir 83 (298)
T KOG0111|consen 10 KRTLY--VGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGR---TIR 83 (298)
T ss_pred ceeEE--eccchHHHHHHHHHhccccccchhhcccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcce---eEE
Confidence 56777 999999999999999999999999999853 34788 99999999999999999999999999 999
Q ss_pred EEeecCCCccc
Q 020065 201 ISYSRHTDLSI 211 (331)
Q Consensus 201 v~~ak~~~~~~ 211 (331)
|.|+++..+..
T Consensus 84 VN~AkP~kike 94 (298)
T KOG0111|consen 84 VNLAKPEKIKE 94 (298)
T ss_pred EeecCCccccC
Confidence 99998776543
No 64
>PLN03213 repressor of silencing 3; Provisional
Probab=99.23 E-value=4.2e-11 Score=112.71 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=69.0
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-CCeeEEEEcCCH--HHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDV--QTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-~g~~afV~f~~~--~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
...|||+||.+.|++++|..+|+.||.|.+|.|++.+ +|| |||+|.+. +++.+||+.|||..+.|+ .|+|.-|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGF-AFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKA 85 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSF-AYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKA 85 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCce-EEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeec
Confidence 3455699999999999999999999999999998654 677 99999987 789999999999999999 9999999
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
|..-
T Consensus 86 KP~Y 89 (759)
T PLN03213 86 KEHY 89 (759)
T ss_pred cHHH
Confidence 7653
No 65
>smart00360 RRM RNA recognition motif.
Probab=99.22 E-value=5.4e-11 Score=84.38 Aligned_cols=67 Identities=21% Similarity=0.282 Sum_probs=58.1
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEeecC----CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~----~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
++.-+.++|+++|+++|+.||.|.++.+.+.. .+++|||+|.+.++|.+|++.|++..+ .|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~---------~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL---------DGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee---------CCcEEEeC
Confidence 35568899999999999999999999887733 367999999999999999999999877 78888773
No 66
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.22 E-value=5.3e-10 Score=103.96 Aligned_cols=189 Identities=20% Similarity=0.188 Sum_probs=125.4
Q ss_pred CCCCCCCCcHHHHHHhhc-ccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 1 MCLTLSLLKVIFILQVFS-AFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~-~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
|-+-+||+...+|++||. +.|+|+-|.++. ++.++.|.|||++.|.+++|+|.||-.++ .||+|.|.
T Consensus 49 ItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~---------~GR~l~vK 119 (608)
T KOG4212|consen 49 ITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEV---------NGRELVVK 119 (608)
T ss_pred EecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccc---------cCceEEEe
Confidence 346789999999999998 669999997664 55677899999999999999999999887 89999986
Q ss_pred eeccccc------------------ccc----ccC-------ccc-----cCCCCCCCCCCCcccCc----cC-------
Q 020065 77 YSAHTDL------------------SVK----FQS-------HRS-----RDYTNPYLPVAPSAIDA----SG------- 111 (331)
Q Consensus 77 ~s~~~~l------------------~~~----~~~-------~~~-----~~~~~~~~~~~~~~~~~----~~------- 111 (331)
--...+. .++ ..+ ... +|-.+......-.+.++ +.
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 4332100 000 000 000 00000000000001110 00
Q ss_pred CccccC-CCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc----cCCCeeEEEEcCCHHHHHHHHHHh
Q 020065 112 QLSVGL-DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEAL 186 (331)
Q Consensus 112 ~~~~~~-~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~----~~~g~~afV~f~~~~~A~~Ai~~l 186 (331)
+..... ...-..+....+| |.||.+.|..+.|++.|.--|.|+.|.+-- +++|+ +.|+|+.+-+|..||..|
T Consensus 200 ~~~Flr~~h~f~pPl~~k~f--vanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~-~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVF--VANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGF-AVIEYDHPVEAVQAISML 276 (608)
T ss_pred hhhhhhhccCCCCCccceee--eeccccccchHHHHHHhccceeeeeeceeeccccccCCe-eEEEecchHHHHHHHHhh
Confidence 011110 0111122344556 899999999999999999999999886532 34676 999999999999999999
Q ss_pred cCCcccCCCceEEEEEee
Q 020065 187 EGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 187 ng~~i~~~~~~~l~v~~a 204 (331)
++.-+++. ...+.+.
T Consensus 277 ~~~g~~~~---~~~~Rl~ 291 (608)
T KOG4212|consen 277 DRQGLFDR---RMTVRLD 291 (608)
T ss_pred ccCCCccc---cceeecc
Confidence 98888877 6666654
No 67
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=7.2e-11 Score=84.09 Aligned_cols=67 Identities=27% Similarity=0.431 Sum_probs=60.0
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
|+|.|++..+++++|+++|+.||.|.++++.... .++ |||+|.+.++|.+|++.|+|..+.++ .|+|
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~-~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v 71 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGF-AFVEFESEEDAEKAIEALNGTKLGGR---PLRV 71 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCce-EEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence 4489999999999999999999999999988765 455 99999999999999999999999887 7766
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=4.3e-11 Score=107.56 Aligned_cols=75 Identities=17% Similarity=0.335 Sum_probs=67.7
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE---ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 127 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF---DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 127 ~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~---~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
+.|+ |.|+|...-|-||+.+|++||.|.+|.|+ +.++|| +||.|++.++|.+|.+.|||..|.|+ +|.|..
T Consensus 97 kRLh--VSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGF-GFVTmen~~dadRARa~LHgt~VEGR---kIEVn~ 170 (376)
T KOG0125|consen 97 KRLH--VSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGF-GFVTMENPADADRARAELHGTVVEGR---KIEVNN 170 (376)
T ss_pred ceeE--eecCCccccCccHHHHHHhhCceeeEEEEeccCCCCcc-ceEEecChhhHHHHHHHhhcceeece---EEEEec
Confidence 4677 88999999999999999999999999865 355788 99999999999999999999999999 999998
Q ss_pred ecCC
Q 020065 204 SRHT 207 (331)
Q Consensus 204 ak~~ 207 (331)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8544
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.20 E-value=4.8e-11 Score=106.11 Aligned_cols=69 Identities=22% Similarity=0.127 Sum_probs=61.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec-CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~-~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++++||++|+++|+.||+|.+|.|.+. ..+++|||+|.+.++|..|+. |||..| .|+.|+|..+..
T Consensus 10 gNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l---------~gr~V~Vt~a~~ 79 (260)
T PLN03120 10 SNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATI---------VDQSVTITPAED 79 (260)
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCee---------CCceEEEEeccC
Confidence 367899999999999999999999988773 356799999999999999995 999988 899999998763
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4.5e-11 Score=103.49 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=62.6
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.+-|++|++|++||.+||.|.+|.+.+ +.++|||||.|.+.|+|.+||+.|||.-+ ..-.|+|+||
T Consensus 196 NLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy---------d~LILrvEws 266 (270)
T KOG0122|consen 196 NLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY---------DNLILRVEWS 266 (270)
T ss_pred cCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc---------ceEEEEEEec
Confidence 4567999999999999999999998776 45788999999999999999999999876 6788999999
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+.+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 71
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.19 E-value=2e-11 Score=103.10 Aligned_cols=75 Identities=24% Similarity=0.439 Sum_probs=67.8
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
.|. |.||.+-++.|+|+.+|++||.|-+|.|..+ .+|| |||.|.+..+|..|+++|+|..|+++ .|+|.
T Consensus 15 SLk--VdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgR---elrVq 88 (256)
T KOG4207|consen 15 SLK--VDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGR---ELRVQ 88 (256)
T ss_pred eEE--ecceeccCCHHHHHHHHHHhCcccceecccccccccccce-eEEEeeecchHHHHHHhhcceeeccc---eeeeh
Confidence 455 8999999999999999999999999999654 4788 99999999999999999999999999 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
+++-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 886443
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.18 E-value=9e-11 Score=84.57 Aligned_cols=63 Identities=29% Similarity=0.293 Sum_probs=53.7
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecC---CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~---~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~ 74 (331)
+.++++|+++|+++|+.||.|.++.+.+.+ .+++|||+|.+.++|.+|++.++|..| +|+.|+
T Consensus 5 nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~---------~g~~l~ 70 (70)
T PF14259_consen 5 NLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI---------DGRKLR 70 (70)
T ss_dssp SSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEE
T ss_pred CCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE---------CCEEcC
Confidence 357799999999999999999999988742 357899999999999999999998887 888875
No 73
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.18 E-value=6.2e-10 Score=105.15 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=108.1
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.++.+|++||+++|+-. .|.++++.+ ++..+=|||||.+.||+.+|++. +-..+ +.|-|.|--+..+
T Consensus 18 LPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m---------g~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESM---------GHRYIEVFTAGGA 86 (510)
T ss_pred CCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHh---------CCceEEEEccCCc
Confidence 47899999999999999 478877766 33344699999999999999973 43443 7788888777655
Q ss_pred cccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE-E
Q 020065 82 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-M 160 (331)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~-i 160 (331)
+........ +........++. +..||+.||+++|.++|+-.=.|.... +
T Consensus 87 e~d~~~~~~----------------------------g~~s~~~d~vVR--LRGLPfscte~dI~~FFaGL~Iv~~gi~l 136 (510)
T KOG4211|consen 87 EADWVMRPG----------------------------GPNSSANDGVVR--LRGLPFSCTEEDIVEFFAGLEIVPDGILL 136 (510)
T ss_pred cccccccCC----------------------------CCCCCCCCceEE--ecCCCccCcHHHHHHHhcCCcccccceee
Confidence 542211000 000001234555 889999999999999999876555522 2
Q ss_pred Ecc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 161 FDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 161 ~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
... ..| -|||+|++.+.|..|+.. |...|..+ -|.|--|
T Consensus 137 ~~d~rgR~tG-EAfVqF~sqe~ae~Al~r-hre~iGhR---YIEvF~S 179 (510)
T KOG4211|consen 137 PMDQRGRPTG-EAFVQFESQESAEIALGR-HRENIGHR---YIEVFRS 179 (510)
T ss_pred eccCCCCccc-ceEEEecCHHHHHHHHHH-HHHhhccc---eEEeehh
Confidence 211 233 499999999999999986 44666666 7777544
No 74
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.17 E-value=3.2e-09 Score=104.97 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=60.1
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 84 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~ 84 (331)
.|+|.||.++|++||+|.+|.++. +++.|||.|....+|.+|+..|++..+ .++.|+|.|+-.+-.+
T Consensus 432 ~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv---------~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 432 NVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKV---------ADKTIKIAWAVGKGPK 498 (894)
T ss_pred hhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccc---------cceeeEEeeeccCCcc
Confidence 689999999999999999998887 446899999999999999999998887 7999999999866443
No 75
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.17 E-value=2.2e-11 Score=102.87 Aligned_cols=70 Identities=21% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
|.-|-+|.|+|+.+|++||.|-+|.|.+ +.+++||||.|.+..||+.|+++|+|..+ .|+.|+|+++
T Consensus 20 NLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l---------dgRelrVq~a 90 (256)
T KOG4207|consen 20 NLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL---------DGRELRVQMA 90 (256)
T ss_pred ceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee---------ccceeeehhh
Confidence 4568899999999999999999998876 55778999999999999999999999987 8999999999
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+..
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 843
No 76
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.17 E-value=1.4e-10 Score=101.55 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=64.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
..+++ |.||.+.+|+++|+++|+.||+|++|+|.++. +++ |||+|.+.++|..|+ .|||..|.++ .|.|.-
T Consensus 5 g~TV~--V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gf-AfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~ 77 (243)
T PLN03121 5 GYTAE--VTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACT-AYVTFKDAYALETAV-LLSGATIVDQ---RVCITR 77 (243)
T ss_pred ceEEE--EecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceE-EEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEe
Confidence 45666 89999999999999999999999999998754 345 999999999999999 6999999999 888875
Q ss_pred ec
Q 020065 204 SR 205 (331)
Q Consensus 204 ak 205 (331)
..
T Consensus 78 ~~ 79 (243)
T PLN03121 78 WG 79 (243)
T ss_pred Cc
Confidence 43
No 77
>PLN03213 repressor of silencing 3; Provisional
Probab=99.17 E-value=5.2e-11 Score=112.06 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=63.8
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCH--HHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDT--ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~--e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.+|+||+++|+.+|+.||.|.+|.|++.+.++||||+|.+. +++.+||+.|||..+ .|+.|+|+.++.
T Consensus 17 NLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEW---------KGR~LKVNKAKP 87 (759)
T PLN03213 17 GLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVW---------KGGRLRLEKAKE 87 (759)
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCee---------cCceeEEeeccH
Confidence 468999999999999999999999988855578999999987 789999999999998 899999999885
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 5
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=82.40 Aligned_cols=65 Identities=26% Similarity=0.456 Sum_probs=57.9
Q ss_pred eccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 133 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 133 v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
|.|++..+++++|+++|+.||.|.++.+.... +|+ |||+|.+.++|.+|++.|++..+.++ .|+|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~-a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGF-AFVEFESEEDAEKALEALNGKELDGR---PLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCce-EEEEeCCHHHHHHHHHHcCCCeeCCc---EEEe
Confidence 46889999999999999999999999887654 355 99999999999999999999999887 7776
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=4.1e-11 Score=107.68 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=62.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
|-+|..-|-||+.+|++||+|.+|.|+- +.+||||||+|++.+||++|.++|||..| .||+|.|+.++.
T Consensus 103 NIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V---------EGRkIEVn~ATa 173 (376)
T KOG0125|consen 103 NIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVV---------EGRKIEVNNATA 173 (376)
T ss_pred cCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhccee---------eceEEEEeccch
Confidence 4567788999999999999998886553 66889999999999999999999999988 899999999885
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.16 E-value=3.3e-10 Score=101.88 Aligned_cols=136 Identities=16% Similarity=0.213 Sum_probs=94.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|..||.|..|.+.. +..+++|||+|.+.++|..|++.++|..| .|+.|+|.+
T Consensus 121 ~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~---------~~~~~~v~~ 191 (306)
T COG0724 121 GNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL---------EGRPLRVQK 191 (306)
T ss_pred eCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE---------CCceeEeec
Confidence 35678999999999999999998887754 45778999999999999999999999988 899999999
Q ss_pred ecc-ccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCee
Q 020065 78 SAH-TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 156 (331)
Q Consensus 78 s~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~ 156 (331)
+.. ..............+.. .. ..........+..++ +.|++..++.+.+...|..+|.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T COG0724 192 AQPASQPRSELSNNLDASFAK-KL---------------SRGKALLLEKSDNLY--VGNLPLKTAEEELADLFKSRGDIV 253 (306)
T ss_pred cccccccccccccccchhhhc-cc---------------cccccccccccceee--ccccccccchhHHHHhccccccce
Confidence 653 11000000000000000 00 000000111234455 889999999999999999999997
Q ss_pred EEEEEccC
Q 020065 157 KIAMFDKN 164 (331)
Q Consensus 157 ~v~i~~~~ 164 (331)
.+.+....
T Consensus 254 ~~~~~~~~ 261 (306)
T COG0724 254 RASLPPSK 261 (306)
T ss_pred eeeccCCC
Confidence 77665443
No 81
>smart00361 RRM_1 RNA recognition motif.
Probab=99.14 E-value=1.1e-10 Score=84.43 Aligned_cols=57 Identities=26% Similarity=0.270 Sum_probs=49.2
Q ss_pred HHHHHHhhc----ccCceeEEE--Eee-----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 10 VIFILQVFS----AFGFVHKIT--TFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 10 ee~L~~lF~----~fG~V~~i~--~~~-----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
+++|+++|+ .||.|.+|. ++. +.++++|||+|.+.++|.+|++.|||+.+ .|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~---------~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF---------DGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEe
Confidence 678999998 999999884 333 34578999999999999999999999987 7999876
No 82
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.14 E-value=3.6e-10 Score=80.84 Aligned_cols=69 Identities=28% Similarity=0.445 Sum_probs=61.7
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
|+|.||+..+++++|+++|+.||.|.++.+.... .++ |||+|.+.++|..|++.+++..+.++ .|.|.|
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~-~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGF-AFVEFEDEEDAEKALEALNGKELGGR---PLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence 3489999999999999999999999999988754 455 99999999999999999999998888 888764
No 83
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.13 E-value=1.6e-10 Score=99.32 Aligned_cols=81 Identities=28% Similarity=0.489 Sum_probs=71.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHH----HHccCCCeeEEEEEcc--CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHM----VFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~----~Fs~fG~V~~v~i~~~--~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
++.+|+ |.||.+.+..++|+. +|+.||.|.+|+.++. -+| +|||.|.+.+.|..|+.+|+|..++|+ .
T Consensus 8 pn~TlY--InnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG-QA~VvFk~~~~As~A~r~l~gfpFygK---~ 81 (221)
T KOG4206|consen 8 PNGTLY--INNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG-QAFVVFKETEAASAALRALQGFPFYGK---P 81 (221)
T ss_pred CCceEe--ehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC-ceEEEecChhHHHHHHHHhcCCcccCc---h
Confidence 455777 889999999998887 9999999999998853 355 599999999999999999999999999 9
Q ss_pred EEEEeecCCCccc
Q 020065 199 LHISYSRHTDLSI 211 (331)
Q Consensus 199 l~v~~ak~~~~~~ 211 (331)
++|.||+.+.-.+
T Consensus 82 mriqyA~s~sdii 94 (221)
T KOG4206|consen 82 MRIQYAKSDSDII 94 (221)
T ss_pred hheecccCccchh
Confidence 9999998765443
No 84
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.1e-10 Score=91.51 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEe----ecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~----~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
|..|-+|||.|++||++.|+|.+|++- ++..-++|||+|.+.++|..|++.+||..+ ..+.|+|.|-
T Consensus 43 NlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL---------ddr~ir~D~D 113 (153)
T KOG0121|consen 43 NLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL---------DDRPIRIDWD 113 (153)
T ss_pred eeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc---------cccceeeecc
Confidence 456789999999999999999999763 245667899999999999999999999987 7999999875
Q ss_pred c
Q 020065 79 A 79 (331)
Q Consensus 79 ~ 79 (331)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 85
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=3.4e-10 Score=80.55 Aligned_cols=66 Identities=26% Similarity=0.301 Sum_probs=57.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecC--CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~--~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+..+.++++++|+++|++||.|.++.+.... ..++|||+|.+.++|.+|++.++|..+ .|+.|+|+
T Consensus 5 ~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~---------~~~~i~v~ 72 (72)
T smart00362 5 GNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKL---------GGRPLRVE 72 (72)
T ss_pred cCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEE---------CCEEEeeC
Confidence 4567889999999999999999999887632 457899999999999999999999887 78888763
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=1.4e-10 Score=91.73 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=57.1
Q ss_pred CCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.|||+|++.|+.||+|++|.+.- +-.|+||+|||++.++|.+||+.|||.++ -|..|.|.|.-.
T Consensus 83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l---------l~q~v~VDw~Fv 151 (170)
T KOG0130|consen 83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL---------LGQNVSVDWCFV 151 (170)
T ss_pred chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh---------hCCceeEEEEEe
Confidence 789999999999999999997643 22568999999999999999999999998 689999988653
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.2e-11 Score=102.44 Aligned_cols=66 Identities=24% Similarity=0.183 Sum_probs=61.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
..+|++||.||..+|++||+|++|.+++ ++++||||+.|+|..+-..||+.|||..| .||+|+|.-
T Consensus 42 gl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki---------~gRtirVDH 111 (219)
T KOG0126|consen 42 GLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI---------LGRTIRVDH 111 (219)
T ss_pred CCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee---------cceeEEeee
Confidence 4689999999999999999999999988 56889999999999999999999999988 899999964
No 88
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=8.4e-11 Score=100.25 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=62.3
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+-||||..|+..|-+||.|.+|.+.- .+.++||||||...|||..||+.||+.++ .||+|+|+|++.
T Consensus 19 adeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL---------~GrtirVN~AkP 89 (298)
T KOG0111|consen 19 ADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL---------FGRTIRVNLAKP 89 (298)
T ss_pred hHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh---------cceeEEEeecCC
Confidence 34899999999999999999998754 34556899999999999999999999998 799999999996
Q ss_pred cccc
Q 020065 81 TDLS 84 (331)
Q Consensus 81 ~~l~ 84 (331)
.+++
T Consensus 90 ~kik 93 (298)
T KOG0111|consen 90 EKIK 93 (298)
T ss_pred cccc
Confidence 6544
No 89
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.05 E-value=5.4e-10 Score=97.95 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=60.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+..+++||++|+++|+.||+|.+|.|.+ +..+++|||+|.+.++|..|+ .|||..| .++.|.|.....
T Consensus 12 NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l---------~d~~I~It~~~~ 80 (243)
T PLN03121 12 NLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATI---------VDQRVCITRWGQ 80 (243)
T ss_pred cCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCee---------CCceEEEEeCcc
Confidence 5678999999999999999999999887 445578999999999999999 7999998 799999987653
No 90
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=3.9e-10 Score=89.24 Aligned_cols=74 Identities=19% Similarity=0.390 Sum_probs=64.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.-+|| |.++....|++++++.|+.||+|..|.+--+. +|+ |+|+|++.++|++|++.|||..|.+. .|.
T Consensus 72 GwIi~--VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGY-aLvEYet~keAq~A~~~~Ng~~ll~q---~v~ 145 (170)
T KOG0130|consen 72 GWIIF--VTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGY-ALVEYETLKEAQAAIDALNGAELLGQ---NVS 145 (170)
T ss_pred eEEEE--EeccCcchhHHHHHHHHhhcccccceeeccccccccccce-eeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence 34666 77999999999999999999999999763322 465 99999999999999999999999999 999
Q ss_pred EEeec
Q 020065 201 ISYSR 205 (331)
Q Consensus 201 v~~ak 205 (331)
|.|.-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 98873
No 91
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=2.2e-11 Score=100.99 Aligned_cols=72 Identities=22% Similarity=0.422 Sum_probs=66.2
Q ss_pred EEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 129 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 129 l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
-+|||+||++.+||.+|..+||.||+|+.|.+++++ +|| ||++|+|-.+...|+..|||..|.++ +|+|+-
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gR---tirVDH 111 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGR---TIRVDH 111 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce-EEEEecCccceEEEEeccCCceecce---eEEeee
Confidence 456799999999999999999999999999998743 678 99999999999999999999999999 999984
Q ss_pred e
Q 020065 204 S 204 (331)
Q Consensus 204 a 204 (331)
.
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 3
No 92
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.05 E-value=2.7e-10 Score=98.38 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=57.7
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+++.+.|+|++.|++||+|++.+++. +++||||||+|.|.|+|.+|++.-| .| +.||+..|+++.
T Consensus 20 L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~--pi--------IdGR~aNcnlA~ 89 (247)
T KOG0149|consen 20 LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN--PI--------IDGRKANCNLAS 89 (247)
T ss_pred cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC--Cc--------ccccccccchhh
Confidence 578999999999999999999887664 5688999999999999999998544 44 589999998876
Q ss_pred c
Q 020065 80 H 80 (331)
Q Consensus 80 ~ 80 (331)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 93
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=6.5e-10 Score=98.92 Aligned_cols=69 Identities=12% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+||++|++|+..|+.||.|.+|.|.+ +++++||||+|++.-+...|.+..+|..| .|+.|-|.+-.
T Consensus 109 LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~I---------dgrri~VDvER 179 (335)
T KOG0113|consen 109 LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKI---------DGRRILVDVER 179 (335)
T ss_pred ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCcee---------cCcEEEEEecc
Confidence 478999999999999999999998887 56889999999999999999999999998 89999998865
Q ss_pred cc
Q 020065 80 HT 81 (331)
Q Consensus 80 ~~ 81 (331)
..
T Consensus 180 gR 181 (335)
T KOG0113|consen 180 GR 181 (335)
T ss_pred cc
Confidence 44
No 94
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.01 E-value=4.3e-10 Score=99.68 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=66.3
Q ss_pred EEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 129 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 129 l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
|| |+|||.++++.+|+.+|++||+|+++.|+++ +|||+.+|...|..||.+|||..|.+. .|+|+-||.+
T Consensus 5 LF--IGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksK 74 (346)
T KOG0109|consen 5 LF--IGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSK 74 (346)
T ss_pred hh--ccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecce---EEEEEecccc
Confidence 55 9999999999999999999999999999985 699999999999999999999999999 9999999866
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.98 E-value=2.6e-09 Score=76.36 Aligned_cols=67 Identities=27% Similarity=0.363 Sum_probs=58.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecC---CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKT---AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~---~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
+..+.++++++|+++|+.||.|.++.+.+.. ..++|||+|.+.++|..|++.+++..+ .|+.|.|.+
T Consensus 5 ~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~---------~~~~~~v~~ 74 (74)
T cd00590 5 GNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL---------GGRPLRVEF 74 (74)
T ss_pred eCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEeC
Confidence 4567889999999999999999999888732 357899999999999999999999877 789888864
No 96
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.96 E-value=1e-09 Score=91.39 Aligned_cols=76 Identities=17% Similarity=0.343 Sum_probs=65.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
++.++ |+|||.+|-+.+|.+||.+||.|..|.+-... ..| |||+|++..+|..||..-+|..+.+ |.|+|+|
T Consensus 6 ~~~iy--vGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppf-afVeFEd~RDAeDAiygRdGYdydg---~rLRVEf 79 (241)
T KOG0105|consen 6 SRRIY--VGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPF-AFVEFEDPRDAEDAIYGRDGYDYDG---CRLRVEF 79 (241)
T ss_pred cceEE--ecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCe-eEEEecCccchhhhhhcccccccCc---ceEEEEe
Confidence 44555 99999999999999999999999998764433 346 9999999999999999999999876 4999999
Q ss_pred ecCC
Q 020065 204 SRHT 207 (331)
Q Consensus 204 ak~~ 207 (331)
..--
T Consensus 80 prgg 83 (241)
T KOG0105|consen 80 PRGG 83 (241)
T ss_pred ccCC
Confidence 7543
No 97
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=7e-09 Score=96.93 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=66.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..+.+| |+.||.++.||+|..+|++-|+|-+++++.+ ++|+ |||.|.+.++|++||+.||+++|..+ +.|
T Consensus 82 ~G~EVf--vGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGY-AFVtf~~Ke~Aq~Aik~lnn~Eir~G--K~i 156 (506)
T KOG0117|consen 82 RGCEVF--VGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGY-AFVTFCTKEEAQEAIKELNNYEIRPG--KLL 156 (506)
T ss_pred CCceEE--ecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcce-EEEEeecHHHHHHHHHHhhCccccCC--CEe
Confidence 356777 9999999999999999999999999998764 5777 99999999999999999999999755 488
Q ss_pred EEEee
Q 020065 200 HISYS 204 (331)
Q Consensus 200 ~v~~a 204 (331)
.|+.|
T Consensus 157 gvc~S 161 (506)
T KOG0117|consen 157 GVCVS 161 (506)
T ss_pred EEEEe
Confidence 88877
No 98
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=1.7e-09 Score=93.52 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=63.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
++...|+|++|++.+..|.|++.|++||+|++.+|+.+ ++|+ +||.|.|.++|.+|.+.-| -.|+|+ +..
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGy-GfVTf~d~~aa~rAc~dp~-piIdGR---~aN 84 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGY-GFVTFRDAEAATRACKDPN-PIIDGR---KAN 84 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccce-eeEEeecHHHHHHHhcCCC-Cccccc---ccc
Confidence 45555679999999999999999999999999988754 3676 9999999999999999875 557887 667
Q ss_pred EEeecC
Q 020065 201 ISYSRH 206 (331)
Q Consensus 201 v~~ak~ 206 (331)
+.++..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 766543
No 99
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.94 E-value=1.8e-09 Score=103.58 Aligned_cols=70 Identities=23% Similarity=0.235 Sum_probs=64.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.+|++|||+|.++|+..|.|.++++.- ++.+||||++|.+.|+|.+|++.|||.++ .|++|+|+|+
T Consensus 25 nip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~---------~gr~l~v~~~ 95 (435)
T KOG0108|consen 25 NIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF---------NGRKLRVNYA 95 (435)
T ss_pred CCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc---------CCceEEeecc
Confidence 5789999999999999999999997764 56788999999999999999999999998 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
...
T Consensus 96 ~~~ 98 (435)
T KOG0108|consen 96 SNR 98 (435)
T ss_pred ccc
Confidence 743
No 100
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.93 E-value=2.2e-09 Score=102.96 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=68.3
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 127 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 127 ~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
+.+| |+|+++++++|+|.++|+..|.|..+++..+. +|| ||++|.+.++|..|++.|||.++.++ +|+|
T Consensus 19 ~~v~--vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~-~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v 92 (435)
T KOG0108|consen 19 SSVF--VGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGF-GFCEFTDEETAERAIRNLNGAEFNGR---KLRV 92 (435)
T ss_pred cceE--ecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCce-eeEecCchhhHHHHHHhcCCcccCCc---eEEe
Confidence 4555 99999999999999999999999999986533 667 99999999999999999999999999 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
.|+....
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 9996554
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.93 E-value=4.2e-09 Score=94.58 Aligned_cols=74 Identities=27% Similarity=0.533 Sum_probs=66.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
..+|| |+||+..+|+++|+++|..||.|.+|.+..+ .+|+ |||+|.+.++|..|++.|+|..|.++ .|+
T Consensus 115 ~~~l~--v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~-~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~ 188 (306)
T COG0724 115 NNTLF--VGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGF-AFVEFESEESAEKAIEELNGKELEGR---PLR 188 (306)
T ss_pred CceEE--EeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCce-EEEEecCHHHHHHHHHHcCCCeECCc---eeE
Confidence 46777 9999999999999999999999999987553 3566 99999999999999999999999999 999
Q ss_pred EEeec
Q 020065 201 ISYSR 205 (331)
Q Consensus 201 v~~ak 205 (331)
|.++.
T Consensus 189 v~~~~ 193 (306)
T COG0724 189 VQKAQ 193 (306)
T ss_pred eeccc
Confidence 99965
No 102
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=5.9e-09 Score=92.89 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=68.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
+-++|| |.-|.+.++|+.|+..|++||.|.+|.|+++ ++|+ |||+|++.-+-.+|.+..+|..|.++ .|
T Consensus 100 Py~TLF--v~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGY-AFIeye~erdm~~AYK~adG~~Idgr---ri 173 (335)
T KOG0113|consen 100 PYKTLF--VARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGY-AFIEYEHERDMKAAYKDADGIKIDGR---RI 173 (335)
T ss_pred ccceee--eeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccce-EEEEeccHHHHHHHHHhccCceecCc---EE
Confidence 467888 7788899999999999999999999998764 4676 99999999999999999999999999 88
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
.|++-.-..
T Consensus 174 ~VDvERgRT 182 (335)
T KOG0113|consen 174 LVDVERGRT 182 (335)
T ss_pred EEEeccccc
Confidence 888765433
No 103
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.92 E-value=2e-09 Score=89.53 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=66.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
..+|+ |+||+..++++.|+++|-..|.|+++.|.+++ +|| |||||.+.|+|.-|++-||...|+|+ +|+
T Consensus 9 d~tiy--vgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGy-gF~Ef~~eedadYAikiln~VkLYgr---pIr 82 (203)
T KOG0131|consen 9 DATLY--VGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGY-GFAEFRTEEDADYAIKILNMVKLYGR---PIR 82 (203)
T ss_pred CceEE--EecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccce-eEEEEechhhhHHHHHHHHHHHhcCc---eeE
Confidence 34566 99999999999999999999999999987643 677 99999999999999999999999999 999
Q ss_pred EEeec
Q 020065 201 ISYSR 205 (331)
Q Consensus 201 v~~ak 205 (331)
|.-+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 98775
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=98.92 E-value=3.2e-09 Score=76.72 Aligned_cols=56 Identities=25% Similarity=0.326 Sum_probs=47.4
Q ss_pred HHHHHHHHc----cCCCeeEEE-E-Ec------cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 142 LDVLHMVFS----AFGPVQKIA-M-FD------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 142 ~~~L~~~Fs----~fG~V~~v~-i-~~------~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
+++|+++|+ +||.|.+|. | +. .++|+ |||+|.+.++|.+|+..|||..+.++ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~-~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGN-VYITFERSEDAARAIVDLNGRYFDGR---TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence 578888888 999999984 3 32 23676 99999999999999999999999998 7765
No 105
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=3.3e-09 Score=93.06 Aligned_cols=84 Identities=17% Similarity=0.307 Sum_probs=72.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
..+.|| |+-|...-+||+++.+|+.||+|+++.+.+.. +| ||||+|.+..+|..||..|+|....-+.+..|.
T Consensus 18 ~drklf--vgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKG-CAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 18 DDRKLF--VGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKG-CAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred cchhhh--hhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCC-ceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 367788 77777889999999999999999999998742 44 799999999999999999999998776678999
Q ss_pred EEeecCCCccc
Q 020065 201 ISYSRHTDLSI 211 (331)
Q Consensus 201 v~~ak~~~~~~ 211 (331)
|+|+++...+.
T Consensus 95 VK~ADTdkER~ 105 (371)
T KOG0146|consen 95 VKFADTDKERT 105 (371)
T ss_pred EEeccchHHHH
Confidence 99998765443
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=6e-09 Score=94.73 Aligned_cols=84 Identities=21% Similarity=0.413 Sum_probs=71.7
Q ss_pred CCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCC-C---eeEEEEcCCHHHHHHHHHHhcCCcccCCC
Q 020065 120 KKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-G---LQALIQYPDVQTAVVAKEALEGHCIYDGG 195 (331)
Q Consensus 120 ~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~-g---~~afV~f~~~~~A~~Ai~~lng~~i~~~~ 195 (331)
+...++.+||| |..|.+-+|+++|.-|||+||.|..+.|+++.+ | .+|||||++.++..+|.-.|++.-|.++
T Consensus 233 Ad~~PPeNVLF--VCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr- 309 (479)
T KOG0415|consen 233 ADVKPPENVLF--VCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR- 309 (479)
T ss_pred cccCCCcceEE--EEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc-
Confidence 45567899999 556656788999999999999999998887653 2 3599999999999999999999999999
Q ss_pred ceEEEEEeecCCC
Q 020065 196 FCKLHISYSRHTD 208 (331)
Q Consensus 196 ~~~l~v~~ak~~~ 208 (331)
.|+|.||..-.
T Consensus 310 --RIHVDFSQSVs 320 (479)
T KOG0415|consen 310 --RIHVDFSQSVS 320 (479)
T ss_pred --eEEeehhhhhh
Confidence 99999986544
No 107
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.75 E-value=3.3e-09 Score=101.68 Aligned_cols=168 Identities=17% Similarity=0.167 Sum_probs=110.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+-+||+++|+++|+.||+|..|..-+.+ .+..||+|-|+.+|++|+++||+.+| .|+.|+...+....
T Consensus 82 nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~---------~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 82 NLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREI---------AGKRIKRPGGARRA 151 (549)
T ss_pred ecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHh---------hhhhhcCCCccccc
Confidence 346789999999999999999997665543 45899999999999999999999998 68887743333222
Q ss_pred ccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 162 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~ 162 (331)
.......+--.++..+.+ .....+. .-..++ +.|.+.++...+..+|+.+|.+.. +-..
T Consensus 152 ~~~~~~~~~~~~~~~p~a-------------~s~pgg~----~~~~~~---g~l~P~~s~~~~~~~~~~~~~~~~-~~~~ 210 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLA-------------NSPPGGW----PRGQLF---GMLSPTRSSILLEHISSVDGSSPG-RETP 210 (549)
T ss_pred chhcccchhhhhccchhh-------------cCCCCCC----cCCcce---eeeccchhhhhhhcchhccCcccc-cccc
Confidence 111100000000000000 0000010 011233 238888888888899999999877 4332
Q ss_pred -cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 163 -KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 163 -~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
.+. +-|++|.+..+++.+...+ |..+.++ ...+.|+...
T Consensus 211 ~~~h--q~~~~~~~~~s~a~~~~~~-G~~~s~~---~~v~t~S~~~ 250 (549)
T KOG4660|consen 211 LLNH--QRFVEFADNRSYAFSEPRG-GFLISNS---SGVITFSGPG 250 (549)
T ss_pred chhh--hhhhhhccccchhhcccCC-ceecCCC---CceEEecCCC
Confidence 333 6889999999997777644 6666666 6778888763
No 108
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=9.4e-09 Score=87.87 Aligned_cols=129 Identities=19% Similarity=0.236 Sum_probs=97.3
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
..+||||.|.+||-+.|.|.+|.|.+ .+.| ||||+|.++-+...|++.|||..+ .++.|.|.+-.-.
T Consensus 18 ~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l---------~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 18 YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDL---------EEDEEQRTLRCGN 87 (267)
T ss_pred hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchh---------ccchhhcccccCC
Confidence 34899999999999999999998877 3345 799999999999999999999887 4665555432110
Q ss_pred cccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE
Q 020065 82 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 161 (331)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~ 161 (331)
+ -.-|+..++++.++.+|+.-|.+..+++.
T Consensus 88 --------------------------------------------s------hapld~r~~~ei~~~v~s~a~p~~~~R~~ 117 (267)
T KOG4454|consen 88 --------------------------------------------S------HAPLDERVTEEILYEVFSQAGPIEGVRIP 117 (267)
T ss_pred --------------------------------------------C------cchhhhhcchhhheeeecccCCCCCcccc
Confidence 0 01255678999999999999999999886
Q ss_pred ccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 162 DKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 162 ~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+.+ +.+ +|+.+.-..+.-.|+...++-++.-+
T Consensus 118 ~~~d~rnrn~-~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 118 TDNDGRNRNF-GFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred ccccCCccCc-cchhhhhhhcCcHHhhhhcccCcCCC
Confidence 543 334 78877776666677776666665544
No 109
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=4.6e-08 Score=88.94 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=63.6
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhc-CCcccCCCceEEEEEee
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCKLHISYS 204 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ln-g~~i~~~~~~~l~v~~a 204 (331)
.++|+ |++|-+.+++.+|++.|.+||+|..|+++...+ ||||+|.++++|..|.+.+- ...|.|. .|+|.|+
T Consensus 228 I~tLy--Ig~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~i~Wg 300 (377)
T KOG0153|consen 228 IKTLY--IGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF---RLKIKWG 300 (377)
T ss_pred eeEEE--ecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce---EEEEEeC
Confidence 34555 999988999999999999999999999999887 89999999999999866554 4445565 9999999
Q ss_pred cC
Q 020065 205 RH 206 (331)
Q Consensus 205 k~ 206 (331)
+.
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=2.8e-08 Score=99.91 Aligned_cols=151 Identities=23% Similarity=0.205 Sum_probs=121.0
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+...++++.+|+..|..+|.|.+|.|-. +..--||||.|.+...+-+|.-.+.+..| ....+++.+..
T Consensus 379 nl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I---------~~g~~r~glG~ 449 (975)
T KOG0112|consen 379 NLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLI---------GNGTHRIGLGQ 449 (975)
T ss_pred CcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCcc---------ccCcccccccc
Confidence 3456899999999999999999887754 22234799999999999999999999877 33345554443
Q ss_pred cccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE
Q 020065 80 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159 (331)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~ 159 (331)
.+ ..+++-++ ++.|...+....|...|..||.|..|.
T Consensus 450 ~k-----------------------------------------st~ttr~~--sgglg~w~p~~~l~r~fd~fGpir~Id 486 (975)
T KOG0112|consen 450 PK-----------------------------------------STPTTRLQ--SGGLGPWSPVSRLNREFDRFGPIRIID 486 (975)
T ss_pred cc-----------------------------------------cccceeec--cCCCCCCChHHHHHHHhhccCcceeee
Confidence 21 01245567 889999999999999999999999887
Q ss_pred EEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 160 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 160 i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
+-.... +|+|.|++...|..|...|-|..|.+- ...|+|.|++...
T Consensus 487 y~hgq~--yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 487 YRHGQP--YAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVDLASPPG 532 (975)
T ss_pred cccCCc--ceeeecccCccchhhHHHHhcCcCCCC-CcccccccccCCC
Confidence 766654 699999999999999999999999876 5579999987543
No 111
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=4.7e-08 Score=93.94 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=63.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
....|+ |.||+.+|++++|+.+|+.||+|..|+.-..++|. .||+|-|+-+|.+|+++||+.+|.++ .|+
T Consensus 74 ~~~~L~--v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~-~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k 143 (549)
T KOG4660|consen 74 NQGTLV--VFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGI-VFVEFYDVRDAERALKALNRREIAGK---RIK 143 (549)
T ss_pred ccceEE--EEecCCcCCHHHHHHHHHhhcchhhhhcccccCce-EEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence 456788 78999999999999999999999998877766665 99999999999999999999999998 555
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.54 E-value=1.7e-07 Score=79.68 Aligned_cols=66 Identities=20% Similarity=0.159 Sum_probs=55.7
Q ss_pred CCcHHHHHHhhccc-CceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 7 LLKVIFILQVFSAF-GFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 7 ~vtee~L~~lF~~f-G~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
-+-+.+|..+|.+| |.|..+++-| +++++||||||++.|.|.-|-+.|||.-+ .++-|.|.+=...
T Consensus 60 g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl---------~e~lL~c~vmppe 130 (214)
T KOG4208|consen 60 GFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL---------MEHLLECHVMPPE 130 (214)
T ss_pred chhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh---------hhheeeeEEeCch
Confidence 45578899999999 7788888755 67899999999999999999999999876 7888999875533
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.52 E-value=4.3e-07 Score=83.61 Aligned_cols=183 Identities=14% Similarity=0.137 Sum_probs=110.4
Q ss_pred CCCCCcHHHHHHhhc---cc-CceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 4 TLSLLKVIFILQVFS---AF-GFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 4 ~~~~vtee~L~~lF~---~f-G~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+||+|+.++.++|. .. |-++.|.+.+ ++..|=|||.|..+|+|..|+..-.+ .+ +-|-|.+.
T Consensus 169 LPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq-~i---------GqRYIElF 238 (508)
T KOG1365|consen 169 LPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQ-NI---------GQRYIELF 238 (508)
T ss_pred CCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHH-HH---------hHHHHHHH
Confidence 589999999999995 33 3556777665 34445699999999999999975433 33 45556666
Q ss_pred eeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCee
Q 020065 77 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 156 (331)
Q Consensus 77 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~ 156 (331)
.|+..+...-.+...+. +..+...+.. . +..............++. +..||++.+.|+|.++|..|-.-+
T Consensus 239 RSTaaEvqqvlnr~~s~----pLi~~~~sp~---~-p~~p~~~~p~~~~kdcvR--LRGLPy~AtvEdIL~FlgdFa~~i 308 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSE----PLIPGLTSPL---L-PGGPARLVPPTRSKDCVR--LRGLPYEATVEDILDFLGDFATDI 308 (508)
T ss_pred HHhHHHHHHHHHhhccc----cccCCCCCCC---C-CCCccccCCCCCCCCeeE--ecCCChhhhHHHHHHHHHHHhhhc
Confidence 66544432211110000 1000000000 0 000000011112244667 889999999999999998887543
Q ss_pred EE---EEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCcc
Q 020065 157 KI---AMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 210 (331)
Q Consensus 157 ~v---~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~ 210 (331)
+. .+.-+. .| -|||+|.+.|.|..|....+++....+ .|.|--+...+++
T Consensus 309 ~f~gVHmv~N~qGrPSG-eAFIqm~nae~a~aaaqk~hk~~mk~R---YiEvfp~S~eeln 365 (508)
T KOG1365|consen 309 RFQGVHMVLNGQGRPSG-EAFIQMRNAERARAAAQKCHKKLMKSR---YIEVFPCSVEELN 365 (508)
T ss_pred ccceeEEEEcCCCCcCh-hhhhhhhhhHHHHHHHHHHHHhhcccc---eEEEeeccHHHHH
Confidence 32 232221 34 499999999999999999887765455 6776655444444
No 114
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1.2e-06 Score=75.32 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=68.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCC-----eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG-----LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g-----~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
-++|| |..||.+|..-+|+.+|..|-.-+...+--.+++ -.|||.|.+..+|.+|+.+|||..+.-....+|+
T Consensus 34 VRTLF--VSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLF--VSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceee--eccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 46777 8899999999999999999887776644222222 3599999999999999999999999876556999
Q ss_pred EEeecCCCccc
Q 020065 201 ISYSRHTDLSI 211 (331)
Q Consensus 201 v~~ak~~~~~~ 211 (331)
|+++|......
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99998766543
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.1e-07 Score=86.64 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=61.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
|-...-+|+|+|+-+|+.||.|.++.+++ +-+--||||||.+.++..+|.=.|++.-| ..+.|.|.|
T Consensus 245 CKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI---------DDrRIHVDF 315 (479)
T KOG0415|consen 245 CKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI---------DDRRIHVDF 315 (479)
T ss_pred EecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee---------ccceEEeeh
Confidence 66677788999999999999999998877 23456899999999999999999999776 899999999
Q ss_pred ecc
Q 020065 78 SAH 80 (331)
Q Consensus 78 s~~ 80 (331)
|++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 984
No 116
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=1.1e-06 Score=85.17 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=110.5
Q ss_pred CCCcHHHHHHhhccc-----------Cc-eeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceE
Q 020065 6 SLLKVIFILQVFSAF-----------GF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 73 (331)
Q Consensus 6 ~~vtee~L~~lF~~f-----------G~-V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i 73 (331)
+.++++.+-.+|..- |+ |..+.+-. .+++||++|.+.++|..|+ .+++..+ .|..+
T Consensus 185 ~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~--~~nfa~ie~~s~~~at~~~-~~~~~~f---------~g~~~ 252 (500)
T KOG0120|consen 185 FTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL--EKNFAFIEFRSISEATEAM-ALDGIIF---------EGRPL 252 (500)
T ss_pred CccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc--cccceeEEecCCCchhhhh-cccchhh---------CCCCc
Confidence 456677776666643 33 45554443 4568999999999999998 5677554 67776
Q ss_pred EEEeeccccccccccCccccCCCCCCCCCCCcccCccCC-ccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccC
Q 020065 74 RITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ-LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAF 152 (331)
Q Consensus 74 ~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~f 152 (331)
++..-.......... ...++ ..+...-..........-++|++|+..++++.+.++.+.|
T Consensus 253 ~~~r~~d~~~~p~~~-------------------~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~f 313 (500)
T KOG0120|consen 253 KIRRPHDYQPVPGIT-------------------LSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSF 313 (500)
T ss_pred eecccccccCCccch-------------------hhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhc
Confidence 664322111100000 00000 0000000000111222334489999999999999999999
Q ss_pred CCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCccc
Q 020065 153 GPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 211 (331)
Q Consensus 153 G~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~~~ 211 (331)
|.+....++.+ ++|+ ||.+|.+..-...|++.|||..++++ +|.|..+-......
T Consensus 314 g~lk~f~lv~d~~~g~skg~-af~ey~dpsvtd~A~agLnGm~lgd~---~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 314 GPLKAFRLVKDSATGNSKGF-AFCEYCDPSVTDQAIAGLNGMQLGDK---KLVVQRAIVGASNA 373 (500)
T ss_pred ccchhheeecccccccccce-eeeeeeCCcchhhhhcccchhhhcCc---eeEeehhhccchhc
Confidence 99988877653 3555 99999999999999999999999999 99999875554433
No 117
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=1.6e-07 Score=80.48 Aligned_cols=74 Identities=20% Similarity=0.337 Sum_probs=65.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
..++|+ |.|+...|+++-|.++|-.-|.|.+|.|.+.+ ..| |||+|.+..+..-|++.|||..+++. .|+|
T Consensus 8 ~drtl~--v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kF-a~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~ 81 (267)
T KOG4454|consen 8 MDRTLL--VQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKF-AYVFFPNENSVQLAGQLENGDDLEED---EEQR 81 (267)
T ss_pred hhhHHH--HHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCce-eeeecccccchhhhhhhcccchhccc---hhhc
Confidence 367788 89999999999999999999999999987643 336 99999999999999999999999998 8888
Q ss_pred Eee
Q 020065 202 SYS 204 (331)
Q Consensus 202 ~~a 204 (331)
++-
T Consensus 82 ~~r 84 (267)
T KOG4454|consen 82 TLR 84 (267)
T ss_pred ccc
Confidence 764
No 118
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.38 E-value=9.2e-07 Score=78.54 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=62.3
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
||+.+|.|+++||++||+.||.++.+.+-- +.+.+.|-|.|...+||.+||+.+||..+ .|+.|++..
T Consensus 88 v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l---------dG~~mk~~~ 158 (243)
T KOG0533|consen 88 VSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL---------DGRPMKIEI 158 (243)
T ss_pred eecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc---------CCceeeeEE
Confidence 689999999999999999999888876654 44557899999999999999999999665 899999987
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
....
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 119
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=74.82 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=61.8
Q ss_pred EeccCCCCCCHHHHHHHHccC-CCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 132 SIENMQYAVTLDVLHMVFSAF-GPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 132 ~v~nl~~~vt~~~L~~~Fs~f-G~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
++..++..+.+.++...|..| |.|.++++-+. ++|+ |||+|++.+-|.-|-+.||++-++++ .|.|.|-.
T Consensus 53 ~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgY-AFVEFEs~eVA~IaAETMNNYLl~e~---lL~c~vmp 128 (214)
T KOG4208|consen 53 YVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGY-AFVEFESEEVAKIAAETMNNYLLMEH---LLECHVMP 128 (214)
T ss_pred eecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCce-EEEEeccHHHHHHHHHHhhhhhhhhh---eeeeEEeC
Confidence 388999999999999999999 66666666453 3566 99999999999999999999999999 99999976
Q ss_pred CC
Q 020065 206 HT 207 (331)
Q Consensus 206 ~~ 207 (331)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 55
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.31 E-value=9.8e-07 Score=80.45 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=57.3
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.++|.+|++.|.+||+|..|+++.+. +.|||+|.+.+.|+.|.+..-++.+ +.|++|+|.|+..
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lv--------I~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLV--------INGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceee--------ecceEEEEEeCCC
Confidence 79999999999999999999998743 4799999999999999998777655 5999999999886
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.30 E-value=1.8e-06 Score=83.10 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=67.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCC--C--eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--G--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~--g--~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
-++.|| |..|...+-..+|++||++||.|+-.++++..+ | .++||.+.+.++|.+||+.|+.+.|.++ -|.
T Consensus 404 ~gRNlW--VSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mIS 478 (940)
T KOG4661|consen 404 LGRNLW--VSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MIS 478 (940)
T ss_pred ccccee--eeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eee
Confidence 467899 678876777789999999999999998877542 2 3499999999999999999999999999 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+-+|...
T Consensus 479 VEkaKNEp 486 (940)
T KOG4661|consen 479 VEKAKNEP 486 (940)
T ss_pred eeecccCc
Confidence 99887544
No 122
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.29 E-value=1.5e-06 Score=81.27 Aligned_cols=73 Identities=15% Similarity=0.341 Sum_probs=64.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
..+.++ |.|||.++|+..|++-|..||.|..+.|+..-+. .+.|+|.++++|.+|+..|||..|.++ .|+|.|
T Consensus 535 Ka~qIi--irNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~Gr---~I~V~y 607 (608)
T KOG4212|consen 535 KACQII--IRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLDGR---NIKVTY 607 (608)
T ss_pred cccEEE--EecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCcccCc---eeeeee
Confidence 345555 9999999999999999999999999988654332 378999999999999999999999999 999987
No 123
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.29 E-value=8.8e-07 Score=81.23 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=111.9
Q ss_pred CCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.+.+.++..++..+|.+....+.. ..+++++.|.|...+.+..|+.......+ .++.+...+.+..
T Consensus 98 ~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~---------~~~~~~~dl~~~~ 168 (285)
T KOG4210|consen 98 ENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVL---------DGNKGEKDLNTRR 168 (285)
T ss_pred cchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhcccc---------ccccccCcccccc
Confidence 3555666788888999776554433 34567899999999999999975443343 4555555544433
Q ss_pred cccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE
Q 020065 82 DLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF 161 (331)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~ 161 (331)
.+...... .+ .........++ +.|++..+++|+|+..|..+|.|..+++.
T Consensus 169 ~~~~~n~~---~~-------------------------~~~~~s~~~~~--~~~~~f~~~~d~~~~~~~~~~~i~~~r~~ 218 (285)
T KOG4210|consen 169 GLRPKNKL---SR-------------------------LSSGPSDTIFF--VGELDFSLTRDDLKEHFVSSGEITSVRLP 218 (285)
T ss_pred cccccchh---cc-------------------------cccCcccccee--ecccccccchHHHhhhccCcCcceeeccC
Confidence 21111000 00 00111234455 88999999999999999999999999986
Q ss_pred ccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 162 DKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 162 ~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
... .|+ |+|+|.+...+..|+.. +...+++. +++|.+.+...
T Consensus 219 ~~~~s~~~kg~-a~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~ 265 (285)
T KOG4210|consen 219 TDEESGDSKGF-AYVDFSAGNSKKLALND-QTRSIGGR---PLRLEEDEPRP 265 (285)
T ss_pred CCCCccchhhh-hhhhhhhchhHHHHhhc-ccCcccCc---ccccccCCCCc
Confidence 543 456 89999999999999998 88999988 99999876554
No 124
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=1.5e-06 Score=85.65 Aligned_cols=82 Identities=16% Similarity=0.362 Sum_probs=70.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc-------cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCC
Q 020065 123 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 195 (331)
Q Consensus 123 ~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~-------~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~ 195 (331)
++.++.|+ |+||...|+++.|...|.+||.|..|+|+= .+.--|+||-|-+..+|.+|++.|||..+++.
T Consensus 171 DP~TTNly--v~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~- 247 (877)
T KOG0151|consen 171 DPQTTNLY--VGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY- 247 (877)
T ss_pred CCccccee--eecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee-
Confidence 55667777 889999999999999999999999999851 11123899999999999999999999999998
Q ss_pred ceEEEEEeecCCCc
Q 020065 196 FCKLHISYSRHTDL 209 (331)
Q Consensus 196 ~~~l~v~~ak~~~~ 209 (331)
.+++.|+|.-.+
T Consensus 248 --e~K~gWgk~V~i 259 (877)
T KOG0151|consen 248 --EMKLGWGKAVPI 259 (877)
T ss_pred --eeeecccccccc
Confidence 999999986554
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.27 E-value=2.2e-07 Score=86.44 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=112.5
Q ss_pred CCCCCcHHHHHHhhcccCc-eeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 4 TLSLLKVIFILQVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~-V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
..-.+|-++|+.+|...-. ...-.+++ + +||||.+.|...|.+|++.++|+.- +.|+++.|..+-.+.
T Consensus 9 L~p~~~psdl~svfg~ak~~~~g~fl~k--~-gyafvd~pdq~wa~kaie~~sgk~e--------lqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 9 LSPQVTPSDLESVFGDAKIPGSGQFLVK--S-GYAFVDCPDQQWANKAIETLSGKVE--------LQGKRQEVEHSVPKK 77 (584)
T ss_pred cCCCCChHHHHHHhccccCCCCcceeee--c-ceeeccCCchhhhhhhHHhhchhhh--------hcCceeeccchhhHH
Confidence 3457889999999976511 12223333 3 5999999999999999999999854 489999998876553
Q ss_pred ccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEE-E
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-F 161 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i-~ 161 (331)
.. ++.+. |.|++....++.|..|...||.|+.+.. .
T Consensus 78 qr-----------------------------------------srk~Q--irnippql~wevld~Ll~qyg~ve~~eqvn 114 (584)
T KOG2193|consen 78 QR-----------------------------------------SRKIQ--IRNIPPQLQWEVLDSLLAQYGTVENCEQVN 114 (584)
T ss_pred HH-----------------------------------------hhhhh--HhcCCHHHHHHHHHHHHhccCCHhHhhhhc
Confidence 32 22334 8899999999999999999999998854 3
Q ss_pred ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 162 DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 162 ~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
.++...+.-|.|.+.+.+..||..|||..+.+. .++|.|--.
T Consensus 115 t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~YiPd 156 (584)
T KOG2193|consen 115 TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYIPD 156 (584)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccCch
Confidence 344311234789999999999999999999998 999999643
No 126
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.27 E-value=1.2e-06 Score=76.81 Aligned_cols=143 Identities=18% Similarity=0.256 Sum_probs=98.5
Q ss_pred HHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccccccccCc
Q 020065 14 LQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSH 90 (331)
Q Consensus 14 ~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~ 90 (331)
...|+.+=.+.+..+++ +.....+|+.|.+...-.++-..-+++.+ +...||+.-.+..+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki---------~~~~VR~a~gtswe-------- 179 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKI---------GKPPVRLAAGTSWE-------- 179 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccc---------cCcceeeccccccC--------
Confidence 56666665555444443 33345699999887777777766677665 44446654433221
Q ss_pred cccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----C
Q 020065 91 RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----G 165 (331)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~ 165 (331)
.+.+.. -...-..|+.++|-.+|++|.|...|.+|-...+.++++++ +
T Consensus 180 ------dPsl~e---------------------w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSk 232 (290)
T KOG0226|consen 180 ------DPSLAE---------------------WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSK 232 (290)
T ss_pred ------Cccccc---------------------CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccc
Confidence 111100 01112334478888889999999999999999999887754 5
Q ss_pred CeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 166 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 166 g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
|+ +||.|.|++++.+|+..|||..+.++ .|++.-+
T Consensus 233 gy-gfVSf~~pad~~rAmrem~gkyVgsr---piklRkS 267 (290)
T KOG0226|consen 233 GY-GFVSFRDPADYVRAMREMNGKYVGSR---PIKLRKS 267 (290)
T ss_pred cc-eeeeecCHHHHHHHHHhhcccccccc---hhHhhhh
Confidence 66 99999999999999999999999998 6666543
No 127
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.21 E-value=4.8e-05 Score=69.58 Aligned_cols=78 Identities=18% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCC--CeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG--~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
..+.+.+||+||-+.+|+++|.+....-| .|.++++|.. ++|| |+|-..+..+..+-++.|-.+.|.|.+
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~-AL~~~~SdAa~Kq~MeiLP~k~iHGQ~-- 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGY-ALLVLNSDAAVKQTMEILPTKTIHGQS-- 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccce-EEEEecchHHHHHHHHhcccceecCCC--
Confidence 45666777999999999999999888877 4677788764 3677 999999998888999999999999883
Q ss_pred EEEEEeec
Q 020065 198 KLHISYSR 205 (331)
Q Consensus 198 ~l~v~~ak 205 (331)
...+.|-|
T Consensus 154 P~V~~~NK 161 (498)
T KOG4849|consen 154 PTVLSYNK 161 (498)
T ss_pred Ceeeccch
Confidence 55555554
No 128
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.21 E-value=7.9e-06 Score=59.85 Aligned_cols=67 Identities=22% Similarity=0.444 Sum_probs=45.8
Q ss_pred EeccCCCCCCHH----HHHHHHccCCC-eeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 132 SIENMQYAVTLD----VLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 132 ~v~nl~~~vt~~----~L~~~Fs~fG~-V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
+|.|||.+.+.. .|++|+..+|. |..| .++ .|+|.|.+.+.|.+|.+.|+|..++|. .|.|+|...
T Consensus 6 ~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~-tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~~~~ 76 (90)
T PF11608_consen 6 YVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGG-TAILRFPNQEFAERAQKRMEGEDVFGN---KISVSFSPK 76 (90)
T ss_dssp EEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT--EEEEESSHHHHHHHHHHHTT--SSSS-----EEESS--
T ss_pred EEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCC-EEEEEeCCHHHHHHHHHhhcccccccc---eEEEEEcCC
Confidence 488999888765 57788888874 5544 234 599999999999999999999999999 999999853
Q ss_pred C
Q 020065 207 T 207 (331)
Q Consensus 207 ~ 207 (331)
.
T Consensus 77 ~ 77 (90)
T PF11608_consen 77 N 77 (90)
T ss_dssp S
T ss_pred c
Confidence 3
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=2.9e-05 Score=74.53 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=94.8
Q ss_pred CCCCCcHHHHHHhhcccCcee-EEEE--------eecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEE
Q 020065 4 TLSLLKVIFILQVFSAFGFVH-KITT--------FEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~-~i~~--------~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~ 74 (331)
.+.||||+.|...|..||.|. +.-- ..+.+.+|+|+.|+++.+....+.+..- ....++
T Consensus 267 lp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~------------~~~~~y 334 (520)
T KOG0129|consen 267 LPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE------------GEGNYY 334 (520)
T ss_pred CCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh------------cccceE
Confidence 467999999999999999874 2110 0122334999999999999988876652 223344
Q ss_pred EEeecc--ccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHc-c
Q 020065 75 ITYSAH--TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFS-A 151 (331)
Q Consensus 75 v~~s~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs-~ 151 (331)
+..+.. +...++. +++......-+ .+....--+.+++| |+.|+-.++-++|..+|+ .
T Consensus 335 f~vss~~~k~k~VQI---------rPW~laDs~fv---------~d~sq~lDprrTVF--VGgvprpl~A~eLA~imd~l 394 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQI---------RPWVLADSDFV---------LDHNQPIDPRRTVF--VGGLPRPLTAEELAMIMEDL 394 (520)
T ss_pred EEEecCcccccceeE---------EeeEeccchhh---------hccCcccCccceEE--ecCCCCcchHHHHHHHHHHh
Confidence 433332 2111110 00000000000 00000111356777 999999999999999999 8
Q ss_pred CCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHH
Q 020065 152 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEA 185 (331)
Q Consensus 152 fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~ 185 (331)
||.|.-+-|.++. +|. |=|.|.+..+=.+||++
T Consensus 395 yGgV~yaGIDtD~k~KYPkGa-GRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 395 FGGVLYVGIDTDPKLKYPKGA-GRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCceEEEEeccCcccCCCCCc-ceeeecccHHHHHHHhh
Confidence 9999999886652 554 88999999988888875
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.19 E-value=6.3e-06 Score=73.27 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=65.6
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCC---eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g---~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
++...|+|.||++.|++++|+++|..||.+.++-+.-+..| .+|-|.|...++|.+|++.+||..+.++ .|++.
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~ 157 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR---PMKIE 157 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc---eeeeE
Confidence 44344569999999999999999999999998877543322 2599999999999999999999999998 88887
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
......
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 765444
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.15 E-value=6.2e-07 Score=90.08 Aligned_cols=133 Identities=17% Similarity=0.109 Sum_probs=103.8
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEe----ecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTF----EKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~----~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+..+.+.+++|...|+.+|.|..+.+. +++-+|+|+|+|.+.++|.+||....+..+ |
T Consensus 674 nl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~----------g-------- 735 (881)
T KOG0128|consen 674 NLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF----------G-------- 735 (881)
T ss_pred hcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh----------h--------
Confidence 345678899999999999988655433 355667899999999999999975554432 2
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
+ .. |+|.|.+...|.++|+.+|+.+|++.++
T Consensus 736 K-----------------------------------------------~~--v~i~g~pf~gt~e~~k~l~~~~gn~~~~ 766 (881)
T KOG0128|consen 736 K-----------------------------------------------IS--VAISGPPFQGTKEELKSLASKTGNVTSL 766 (881)
T ss_pred h-----------------------------------------------hh--hheeCCCCCCchHHHHhhccccCCcccc
Confidence 0 11 3388999999999999999999999999
Q ss_pred EEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 159 AMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 159 ~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
++...+ +|. |||.|.+..+|.+++..+++..+... .+.|..+.+
T Consensus 767 ~~vt~r~gkpkg~-a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~vsnp 814 (881)
T KOG0128|consen 767 RLVTVRAGKPKGK-ARVDYNTEADASRKVASVDVAGKREN---NGEVQVSNP 814 (881)
T ss_pred chhhhhccccccc-eeccCCCcchhhhhcccchhhhhhhc---CccccccCC
Confidence 765432 455 99999999999999999988877766 666666554
No 132
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.12 E-value=2.2e-06 Score=74.60 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=62.2
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
|+|++|++.+.+.+|..+|..||.|.++.+.. || +||+|+|..+|..|+..||+..|.+. .|.|+|++.
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---gf-~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~ 72 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADMKN---GF-GFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARG 72 (216)
T ss_pred eeecccCCccchhHHHHHHhhccccccceeec---cc-ceeccCchhhhhcccchhcCceecce---eeeeecccc
Confidence 56999999999999999999999999876633 66 89999999999999999999999998 788998763
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.08 E-value=6.4e-06 Score=79.48 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=54.9
Q ss_pred CCcHHHHHHhhcccCceeEEEEee--cC--CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFE--KT--AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~--~~--~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+-..+|++||++||+|+-.++.. +. .+.|+||+|.+.++|.++|+.|+-+++ .|+.|-|..++..
T Consensus 416 tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL---------HGrmISVEkaKNE 485 (940)
T KOG4661|consen 416 TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL---------HGRMISVEKAKNE 485 (940)
T ss_pred chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh---------cceeeeeeecccC
Confidence 344679999999999998665544 22 346899999999999999999999998 8999999988744
No 134
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.07 E-value=0.00031 Score=67.18 Aligned_cols=178 Identities=20% Similarity=0.200 Sum_probs=104.2
Q ss_pred CCCCCcHHHHHHhhcccCceeE-EEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHK-ITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~-i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+|.||++||.++|+-.=.|.+ |.+.. .+..+=|||+|++.|.|++|+.. |...| +.|=|.|..|.
T Consensus 111 LPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i---------GhRYIEvF~Ss 180 (510)
T KOG4211|consen 111 LPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI---------GHRYIEVFRSS 180 (510)
T ss_pred CCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh---------ccceEEeehhH
Confidence 5799999999999998866655 33333 33445699999999999999975 33344 77888888777
Q ss_pred cccccccccC---ccc------c--------CCCCCCCCCC------------------CcccC--ccC------Cccc-
Q 020065 80 HTDLSVKFQS---HRS------R--------DYTNPYLPVA------------------PSAID--ASG------QLSV- 115 (331)
Q Consensus 80 ~~~l~~~~~~---~~~------~--------~~~~~~~~~~------------------~~~~~--~~~------~~~~- 115 (331)
+.++...... ... + |+....-... ....+ .-+ ....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 5544322100 000 0 1100000000 00000 000 0000
Q ss_pred ---cCC-----CCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHH
Q 020065 116 ---GLD-----GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAK 183 (331)
Q Consensus 116 ---~~~-----~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai 183 (331)
... +......+...||....|++..++.++.+.|+..=.+ +|.|--. ..| -|+|+|.+.++|..|+
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TG-EAdveF~t~edav~Am 338 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATG-EADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCC-cceeecccchhhHhhh
Confidence 000 0000011222666688999999999999999987555 5555321 133 4999999999999998
Q ss_pred HHhcCCcccCC
Q 020065 184 EALEGHCIYDG 194 (331)
Q Consensus 184 ~~lng~~i~~~ 194 (331)
.. ++..+..+
T Consensus 339 sk-d~anm~hr 348 (510)
T KOG4211|consen 339 GK-DGANMGHR 348 (510)
T ss_pred cc-CCcccCcc
Confidence 64 55655554
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.06 E-value=1.1e-05 Score=73.59 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=63.2
Q ss_pred EEEeccCCCCCCHHHHHHHHccCCCee--------EEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 130 LASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 130 ~v~v~nl~~~vt~~~L~~~Fs~fG~V~--------~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
.|||.|||.+||.+++.++|+++|.|. +|++++.+ +|- |++.|...++...|++.|++..|.|.
T Consensus 136 ~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGD-aLc~y~K~ESVeLA~~ilDe~~~rg~--- 211 (382)
T KOG1548|consen 136 SVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGD-ALCCYIKRESVELAIKILDEDELRGK--- 211 (382)
T ss_pred eEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCc-eEEEeecccHHHHHHHHhCcccccCc---
Confidence 355999999999999999999999885 46677765 455 99999999999999999999999987
Q ss_pred EEEEEeec
Q 020065 198 KLHISYSR 205 (331)
Q Consensus 198 ~l~v~~ak 205 (331)
.|+|+-|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999775
No 136
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.05 E-value=1.9e-05 Score=75.65 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=59.5
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
|+|.|||.+++.++|+++|..||.|++..|..++ .+..|||+|.+.+++..||++- -..|.++ +|.|+-.+.
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~---kl~Veek~~ 366 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR---KLNVEEKRP 366 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCe---eEEEEeccc
Confidence 5599999999999999999999999999886644 1134999999999999999875 5556666 888886443
No 137
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.93 E-value=4.4e-06 Score=73.30 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=59.1
Q ss_pred CCCCCC-CCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 1 MCLTLS-LLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 1 ~~~~~~-~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
+|-+.. |+++|.|...|.+|=.-...++++ +++++|+||.|.+.+++.+|+++|||+-+ +.+.|++
T Consensus 194 fcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV---------gsrpikl 264 (290)
T KOG0226|consen 194 FCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV---------GSRPIKL 264 (290)
T ss_pred ecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc---------ccchhHh
Confidence 465544 899999999999997765555554 55788999999999999999999999976 8888888
Q ss_pred Eeecccc
Q 020065 76 TYSAHTD 82 (331)
Q Consensus 76 ~~s~~~~ 82 (331)
..|.-++
T Consensus 265 RkS~wke 271 (290)
T KOG0226|consen 265 RKSEWKE 271 (290)
T ss_pred hhhhHHh
Confidence 7665443
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.91 E-value=3e-05 Score=68.99 Aligned_cols=76 Identities=17% Similarity=0.395 Sum_probs=65.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..+.++ |+|++..+|.+++..+|+.||.|.+|.|..++ +|+ +||+|.+.+.+..|+. |||..|.+. .+
T Consensus 100 d~~sv~--v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~-~yvef~~~~~~~~ay~-l~gs~i~~~---~i 172 (231)
T KOG4209|consen 100 DAPSVW--VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGF-AYVEFSSYELVEEAYK-LDGSEIPGP---AI 172 (231)
T ss_pred CCceEE--EeccccccccchhhheeeccCCccceeeeccccCCCccee-EEEecccHhhhHHHhh-cCCcccccc---cc
Confidence 355666 89999999999999999999999988775432 566 9999999999999999 999999999 99
Q ss_pred EEEeecCC
Q 020065 200 HISYSRHT 207 (331)
Q Consensus 200 ~v~~ak~~ 207 (331)
.|++.+..
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 99987654
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.87 E-value=3.8e-05 Score=59.86 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=38.6
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
+|. |.++...++.++|+++|+.||.|.-|.+.+... .|+|.|.+.++|.+|++.+.-.
T Consensus 3 il~--~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 3 ILK--FSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEE--EEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred EEE--EecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 455 677888999999999999999999888877665 6999999999999999988655
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.80 E-value=3e-05 Score=74.33 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=54.7
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++|+|+++|+++|..||.|++..|..+ +...||||+|.+.+++..||++- .+. +++++|.|+--
T Consensus 295 nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~-------ig~~kl~Veek 364 (419)
T KOG0116|consen 295 NLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLE-------IGGRKLNVEEK 364 (419)
T ss_pred cCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccc-------cCCeeEEEEec
Confidence 56899999999999999999988766552 23378999999999999999864 332 48999999754
Q ss_pred c
Q 020065 79 A 79 (331)
Q Consensus 79 ~ 79 (331)
+
T Consensus 365 ~ 365 (419)
T KOG0116|consen 365 R 365 (419)
T ss_pred c
Confidence 4
No 141
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=1.5e-05 Score=74.74 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=55.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----------C------CCeeEEEEcCCHHHHHHHHHHhc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----------N------GGLQALIQYPDVQTAVVAKEALE 187 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----------~------~g~~afV~f~~~~~A~~Ai~~ln 187 (331)
++++|+ +.||+.+-..+.|.+||+.+|.|..|+|.+- + ..-||||||++.+.|.+|.+.||
T Consensus 230 ~srtiv--aenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIV--AENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEE--EecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 578888 7899999999999999999999999998432 0 12479999999999999999997
Q ss_pred CCcccCC
Q 020065 188 GHCIYDG 194 (331)
Q Consensus 188 g~~i~~~ 194 (331)
...-...
T Consensus 308 ~e~~wr~ 314 (484)
T KOG1855|consen 308 PEQNWRM 314 (484)
T ss_pred hhhhhhh
Confidence 5554433
No 142
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.70 E-value=0.00026 Score=71.08 Aligned_cols=14 Identities=14% Similarity=0.010 Sum_probs=6.4
Q ss_pred CCCHHHHHHHHccC
Q 020065 139 AVTLDVLHMVFSAF 152 (331)
Q Consensus 139 ~vt~~~L~~~Fs~f 152 (331)
...+|+|.++-.++
T Consensus 361 E~~e~Dl~el~~rl 374 (1102)
T KOG1924|consen 361 EHKEDDLEELSGRL 374 (1102)
T ss_pred hhhhhhHHHHHhHH
Confidence 34445554444443
No 143
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.69 E-value=4.7e-05 Score=70.40 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=54.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
.+.|| |+.|.+.+++|.|++.|+.||+|.+++++++ ++|| +||+|++.+...+++..- .+.|.++
T Consensus 6 ~~Klf--iGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgF-gfv~f~~~~~v~~vl~~~-~h~~dgr 75 (311)
T KOG4205|consen 6 SGKLF--IGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGF-GFVTFATPEGVDAVLNAR-THKLDGR 75 (311)
T ss_pred Cccee--ecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccc-cceecCCCcchheeeccc-ccccCCc
Confidence 56788 9999999999999999999999999999874 3677 999999998888887653 3445555
No 144
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=0.00019 Score=65.44 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=59.0
Q ss_pred EEeccCCCCCCHHH----H--HHHHccCCCeeEEEEEccC------CC-eeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 131 ASIENMQYAVTLDV----L--HMVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 131 v~v~nl~~~vt~~~----L--~~~Fs~fG~V~~v~i~~~~------~g-~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
|||-.++..|-+|+ | .+.|..||.|.+|+|-++. .+ .-.||.|.+.|+|++||...+|..+.|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr--- 193 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR--- 193 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc---
Confidence 55777777776555 3 4789999999999986643 12 2249999999999999999999999999
Q ss_pred EEEEEeecC
Q 020065 198 KLHISYSRH 206 (331)
Q Consensus 198 ~l~v~~ak~ 206 (331)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999999853
No 145
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.53 E-value=0.00025 Score=54.62 Aligned_cols=70 Identities=13% Similarity=0.134 Sum_probs=47.9
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEE-------------EEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-------------MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~-------------i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
|.|+..+.. ....+.+.|++||+|++.. ++... +. ..|.|+++.+|.+|+.. ||..|.+. +
T Consensus 9 VtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-NW-i~I~Y~~~~~A~rAL~~-NG~i~~g~--~ 82 (100)
T PF05172_consen 9 VTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-NW-IHITYDNPLSAQRALQK-NGTIFSGS--L 82 (100)
T ss_dssp EEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT-TE-EEEEESSHHHHHHHHTT-TTEEETTC--E
T ss_pred EEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC-CE-EEEECCCHHHHHHHHHh-CCeEEcCc--E
Confidence 446677655 5566678899999998875 33333 34 88999999999999984 89988775 4
Q ss_pred EEEEEeecC
Q 020065 198 KLHISYSRH 206 (331)
Q Consensus 198 ~l~v~~ak~ 206 (331)
-+-|.|.+.
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 556777653
No 146
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.52 E-value=0.00018 Score=48.75 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=38.1
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHH
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 183 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai 183 (331)
|.|...+.... +.+...|..||+|+++.+-.+.. ..+|+|.+..+|.+|+
T Consensus 4 I~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~~~--~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 4 ISVSGFPPDLA-EEVLEHFASFGEIVDIYVPESTN--WMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEeECchHH-HHHHHHHHhcCCEEEEEcCCCCc--EEEEEECCHHHHHhhC
Confidence 44666654444 44556899999999988875444 5999999999999985
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.49 E-value=0.00033 Score=51.50 Aligned_cols=56 Identities=20% Similarity=0.333 Sum_probs=39.2
Q ss_pred HHHHHhhccc-CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 11 IFILQVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 11 e~L~~lF~~f-G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.-|++|+.-+ |+|.+| .++.|.|.|.++|.|.+|.+-|+|..+ .|+.|.|+|+...
T Consensus 21 ~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdV---------fG~kI~v~~~~~~ 77 (90)
T PF11608_consen 21 NRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDV---------FGNKISVSFSPKN 77 (90)
T ss_dssp HHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--S---------SSS--EEESS--S
T ss_pred HHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhccccc---------ccceEEEEEcCCc
Confidence 3578888888 567766 235799999999999999999999887 7999999998644
No 148
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.49 E-value=0.00021 Score=64.09 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=52.7
Q ss_pred HHHHHHhhcccCceeEEEEeec-----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 10 VIFILQVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 10 ee~L~~lF~~fG~V~~i~~~~~-----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
++++.+.+++||.|.+|+|+.- ...-.-||+|+..++|.+|+-.|||+-| +||.++..|-+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyF---------GGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYF---------GGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCcee---------cceeeeheeccHH
Confidence 5678999999999999999861 1112489999999999999999999987 8999998886643
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.42 E-value=0.00019 Score=71.24 Aligned_cols=70 Identities=16% Similarity=0.243 Sum_probs=60.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee-------cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~-------~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
|....|+|+.|...|.+||.|..|+++. ++....|||-|.+..||.+|++.|+|..+ .+..+++
T Consensus 181 Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv---------~~~e~K~ 251 (877)
T KOG0151|consen 181 NLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV---------MEYEMKL 251 (877)
T ss_pred cCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee---------eeeeeee
Confidence 5667899999999999999999998874 34556799999999999999999999876 6899999
Q ss_pred Eeeccc
Q 020065 76 TYSAHT 81 (331)
Q Consensus 76 ~~s~~~ 81 (331)
.|++.-
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 998743
No 150
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.40 E-value=0.00032 Score=62.94 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=53.1
Q ss_pred HHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 142 LDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 142 ~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
++++++.+++||.|.+|.||... .-...||+|+..++|.+|+-.|||..+.|+ .++.+|-....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr---~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR---VVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce---eeeheeccHHh
Confidence 45788899999999999987632 123489999999999999999999999998 88888865433
No 151
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.37 E-value=0.00029 Score=68.74 Aligned_cols=88 Identities=25% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHcc-CCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 123 EPESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 123 ~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~-fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
...+++|+ |.||--..|.-+|+.+..+ .|.|+...|.+-+. .|||.|.+.++|.+-+.+|||...-..|...|.+
T Consensus 441 ~~~Snvlh--I~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKS--hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLH--IDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKS--HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEe--eecccccchHHHHHHHHhhccCchHHHHHHHhhc--ceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 34688999 8899999999999999995 55666665544333 5999999999999999999999998777889999
Q ss_pred EeecCCCcccccC
Q 020065 202 SYSRHTDLSIKVN 214 (331)
Q Consensus 202 ~~ak~~~~~~~~~ 214 (331)
.|....++..+++
T Consensus 517 df~~~deld~hr~ 529 (718)
T KOG2416|consen 517 DFVRADELDKHRN 529 (718)
T ss_pred eecchhHHHHHhc
Confidence 9998887765554
No 152
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.35 E-value=0.00058 Score=60.31 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCC
Q 020065 45 ETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP 124 (331)
Q Consensus 45 e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (331)
.-|..|..+|+++-. .|+.++|-|+.++.
T Consensus 5 t~ae~ak~eLd~~~~---------~~~~lr~rfa~~a~------------------------------------------ 33 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP---------KGRSLRVRFAMHAE------------------------------------------ 33 (275)
T ss_pred cHHHHHHHhcCCCCC---------CCCceEEEeeccce------------------------------------------
Confidence 457788888999754 89999999988742
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
|+ |.||..-++.|.|.+.|+.||.|.+.++.-+. .+--++|+|...-.|.+|+..++-.-+.
T Consensus 34 ----l~--V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 34 ----LY--VVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred ----EE--EEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 33 77998999999999999999999988654322 1124899999999999999988644443
No 153
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.28 E-value=0.00044 Score=63.18 Aligned_cols=59 Identities=24% Similarity=0.405 Sum_probs=49.2
Q ss_pred HHhhcccCceeEEEEeecCC-----Cce--EEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 14 LQVFSAFGFVHKITTFEKTA-----GFQ--ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 14 ~~lF~~fG~V~~i~~~~~~~-----~~~--aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
++.|.+||.|.+|++-+|.+ .+. .+|+|.+.|||.+||.+.+|..+ .||.|+..|..-+
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~---------DGr~lkatYGTTK 203 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL---------DGRVLKATYGTTK 203 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc---------cCceEeeecCchH
Confidence 57899999999999988431 111 49999999999999999999876 8999999987644
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.26 E-value=0.00035 Score=62.21 Aligned_cols=68 Identities=24% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
-.|.+|.+++...|+.+|.|..|.+.. +..+++|||+|.+.+.+..|++ |||..| .|+.|.|.+..
T Consensus 109 vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i---------~~~~i~vt~~r 178 (231)
T KOG4209|consen 109 VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI---------PGPAIEVTLKR 178 (231)
T ss_pred cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc---------ccccceeeeee
Confidence 357888889999999999998776654 3467899999999999999998 999988 79999998766
Q ss_pred cc
Q 020065 80 HT 81 (331)
Q Consensus 80 ~~ 81 (331)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 44
No 155
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0004 Score=67.42 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=50.7
Q ss_pred HHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 11 IFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
..|..+|+++|+|.++.+.- +..+||.|+||++..+|+.||+.|||+.|. ...+..|..
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--------knHtf~v~~ 140 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--------KNHTFFVRL 140 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--------ccceEEeeh
Confidence 45788999999999987763 557889999999999999999999999984 777887754
No 156
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.24 E-value=0.0013 Score=53.69 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCCCcEEEEEecc--CCC-CCCH----HHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCC
Q 020065 123 EPESNVLLASIEN--MQY-AVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 195 (331)
Q Consensus 123 ~~~~~~l~v~v~n--l~~-~vt~----~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~ 195 (331)
.|+..++.|++.+ .+. ..-+ ++|.+.|+.||+|.-|++... +-+|.|.+-++|.+|++ |+|.+|.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~- 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGR- 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTE-
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCE-
Confidence 4567778888877 111 1222 378889999999998888774 48999999999999997 899999998
Q ss_pred ceEEEEEeecCC
Q 020065 196 FCKLHISYSRHT 207 (331)
Q Consensus 196 ~~~l~v~~ak~~ 207 (331)
.|+|+...+.
T Consensus 98 --~l~i~LKtpd 107 (146)
T PF08952_consen 98 --TLKIRLKTPD 107 (146)
T ss_dssp --EEEEEE----
T ss_pred --EEEEEeCCcc
Confidence 9999976443
No 157
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.22 E-value=0.00015 Score=63.95 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=49.7
Q ss_pred HHHHHhhc-ccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 11 IFILQVFS-AFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 11 e~L~~lF~-~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
|+|...|+ +||+|.++++-+ ...|+ ++|.|...|+|.+|++.|||.-+ .|++|...++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GN-VYV~f~~Ee~ae~a~~~lnnRw~---------~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGN-VYVKFRSEEDAEAALEDLNNRWY---------NGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhh-hhhhcccHHHHHHHHHHHcCccc---------cCCcceeeecCcC
Confidence 45555566 999999997655 22344 99999999999999999999877 8999999987754
No 158
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.14 E-value=0.00032 Score=65.20 Aligned_cols=174 Identities=16% Similarity=0.129 Sum_probs=104.6
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee--------cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE--------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~--------~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
-+-.+|.|.++.||.-.|+|..+.++. -.++ .|||.|.|..++..|- .|.++.| -++.|.|
T Consensus 15 ispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sR-tcyVkf~d~~sv~vaQ-hLtntvf---------vdraliv 83 (479)
T KOG4676|consen 15 ISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISR-TCYVKFLDSQSVTVAQ-HLTNTVF---------VDRALIV 83 (479)
T ss_pred cCchhhHHHHHHHHhhccccccccccCCCCCccCcceee-eEEEeccCCcceeHHh-hhcccee---------eeeeEEE
Confidence 345688999999999999999998876 1123 5999999999998887 4565555 3555554
Q ss_pred E-eeccccccc-cccCccc-------cCCCCCCCCC-CCcc-cCccCC-----cccc--CCCCCCCCCCcEEEEEeccCC
Q 020065 76 T-YSAHTDLSV-KFQSHRS-------RDYTNPYLPV-APSA-IDASGQ-----LSVG--LDGKKLEPESNVLLASIENMQ 137 (331)
Q Consensus 76 ~-~s~~~~l~~-~~~~~~~-------~~~~~~~~~~-~~~~-~~~~~~-----~~~~--~~~~~~~~~~~~l~v~v~nl~ 137 (331)
- |...-.-.- .+..... ..+.. .|+. ...+ +.+..+ +.+. .+....+...+++. |.+|.
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg-~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~--v~sl~ 160 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDG-VLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTRE--VQSLI 160 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCC-ccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhh--hhcch
Confidence 3 322110000 0000000 00000 1111 0100 111111 1111 11222333346666 88999
Q ss_pred CCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 138 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 138 ~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
..+..+++-+.|..+|+|....+-.+.....|.|+|....+...|+.. +|..+-
T Consensus 161 ~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 161 SAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred hhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999999999999887766555444577999999888888875 456543
No 159
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.12 E-value=0.00086 Score=52.26 Aligned_cols=50 Identities=24% Similarity=0.206 Sum_probs=33.5
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCC
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~ 57 (331)
-++|-++|+++|+.||.|.-|.+.++. ..|+|.|.+.++|.+|++.+.-.
T Consensus 11 ~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 11 EPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999988887754 35999999999999999987643
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.11 E-value=0.00081 Score=45.53 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHH
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAK 51 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av 51 (331)
++++..|..||+|.++.+-. .....+|+|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 55777899999999988764 3457999999999999985
No 161
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.06 E-value=0.004 Score=47.61 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCCCCcHHHHHHhhccc--CceeEEEEee-----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 4 TLSLLKVIFILQVFSAF--GFVHKITTFE-----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~f--G~V~~i~~~~-----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
-+...|.++|.+++... |.. +...++ +.+.|||||.|.+.++|.+-.+.++|+.+. .....+...|.
T Consensus 9 IPn~~t~~~L~~~l~~~~~g~y-DF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~-----~~~s~Kvc~i~ 82 (97)
T PF04059_consen 9 IPNKYTQEMLIQILDEHFKGKY-DFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP-----NFNSKKVCEIS 82 (97)
T ss_pred CCCCCCHHHHHHHHHHhccCcc-eEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc-----cCCCCcEEEEe
Confidence 35678899998888754 433 222222 557889999999999999999999999873 22256777888
Q ss_pred eeccc
Q 020065 77 YSAHT 81 (331)
Q Consensus 77 ~s~~~ 81 (331)
||+-+
T Consensus 83 yAriQ 87 (97)
T PF04059_consen 83 YARIQ 87 (97)
T ss_pred hhHhh
Confidence 88743
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.94 E-value=0.00051 Score=60.58 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=54.7
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc---------C-CC------eeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---------N-GG------LQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~---------~-~g------~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
||+.|+|+..+...|++||+.||.|-+|.+-.. + +| .-|+|||.+...|...-+.|||..|.|+
T Consensus 77 vylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggk 156 (278)
T KOG3152|consen 77 VYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGK 156 (278)
T ss_pred EEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCC
Confidence 448999999999999999999999999987321 1 11 2378999999999999999999999998
No 163
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.85 E-value=0.0028 Score=63.16 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=56.8
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
||. +.|++.+|+.|+|.++|.-|-.+-.-.+.+.+ .| -|.|-|++.++|.+|...|+++.|+++ +++|.
T Consensus 869 V~~--~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTG-e~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l~ 942 (944)
T KOG4307|consen 869 VLS--CNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTG-ECMVAFESQEEARRASMDLDGQKIRNR---VVSLR 942 (944)
T ss_pred EEE--ecCCCccccHHHHHHHhcccccCCCceeEeecCCCCccc-ceeEeecCHHHHHhhhhccccCcccce---eEEEE
Confidence 555 89999999999999999999766444343322 23 399999999999999999999999998 77765
No 164
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.84 E-value=0.001 Score=61.52 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=63.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE--------EEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI--------AMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v--------~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
+....|+|..+++.+++++|.+.|..+|.|.+= .|.+.+ ++- |.|.|+|...|+.||+.++++.+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGe-atvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGE-ATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCc-eeeeecChhhhhhhhhhhcccccc
Confidence 334445588999999999999999999988543 233322 444 999999999999999999999999
Q ss_pred CCCceEEEEEeecCCC
Q 020065 193 DGGFCKLHISYSRHTD 208 (331)
Q Consensus 193 ~~~~~~l~v~~ak~~~ 208 (331)
+. +|+|.+++...
T Consensus 143 gn---~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GN---TIKVSLAERRT 155 (351)
T ss_pred CC---Cchhhhhhhcc
Confidence 97 99999986554
No 165
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=5.9e-05 Score=76.23 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=98.0
Q ss_pred HHHHHhhcccCceeEEEEeecC----CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccc--
Q 020065 11 IFILQVFSAFGFVHKITTFEKT----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS-- 84 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~----~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~-- 84 (331)
+..+..|..+|.|.+|.+.++. ...++++++....+|..|.. ..+..+ .++.+.|..+..++..
T Consensus 587 e~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~---------a~~~~av~~ad~~~~~~~ 656 (881)
T KOG0128|consen 587 EIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGAL---------ANRSAAVGLADAEEKEEN 656 (881)
T ss_pred HhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-cccccc---------CCccccCCCCCchhhhhc
Confidence 3678899999999999887621 23368999999999999985 455555 6777777777654321
Q ss_pred ccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE--c
Q 020065 85 VKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF--D 162 (331)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~--~ 162 (331)
.+......|+ ....| +.||+..+.+++|+..|+.+|.+..+.+. .
T Consensus 657 ~kvs~n~~R~-------------------------------~~~~f--vsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~ 703 (881)
T KOG0128|consen 657 FKVSPNEIRD-------------------------------LIKIF--VSNLSPKMSEEDLSERFSPSGTIEVVQIVIHK 703 (881)
T ss_pred cCcCchHHHH-------------------------------HHHHH--HhhcchhhcCchhhhhcCccchhhhHHHHHHh
Confidence 1111111111 22344 88999999999999999999988777543 2
Q ss_pred c---CCCeeEEEEcCCHHHHHHHHHHhcCCcc
Q 020065 163 K---NGGLQALIQYPDVQTAVVAKEALEGHCI 191 (331)
Q Consensus 163 ~---~~g~~afV~f~~~~~A~~Ai~~lng~~i 191 (331)
. -+|. |+|+|.+.++|.+||....+..+
T Consensus 704 n~~~~rG~-~Y~~F~~~~~~~aaV~f~d~~~~ 734 (881)
T KOG0128|consen 704 NEKRFRGK-AYVEFLKPEHAGAAVAFRDSCFF 734 (881)
T ss_pred hccccccc-eeeEeecCCchhhhhhhhhhhhh
Confidence 1 1566 99999999999999987665543
No 166
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.83 E-value=0.0098 Score=45.50 Aligned_cols=77 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred EEeccCCCCCCHHHHHHHHccC--CCeeEEEEE-----ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCC-ceEEEEE
Q 020065 131 ASIENMQYAVTLDVLHMVFSAF--GPVQKIAMF-----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHIS 202 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~f--G~V~~v~i~-----~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~-~~~l~v~ 202 (331)
|.|.|+|...|.++|.+++... |...-+.+. +.+.|+ |||.|.+.+.|.+-.+.++|..+.... .+...|+
T Consensus 4 vMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GY-AFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 4 VMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGY-AFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred EEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEE-EEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 3389999999999999888653 333323221 123566 999999999999999999999986321 2367888
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
||+.+.
T Consensus 83 yAriQG 88 (97)
T PF04059_consen 83 YARIQG 88 (97)
T ss_pred hhHhhC
Confidence 887543
No 167
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.77 E-value=0.0046 Score=50.59 Aligned_cols=57 Identities=28% Similarity=0.320 Sum_probs=44.8
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
++|.+.|+.||+|.=|++.. +.-+|+|.+-++|.+|+ .|+|.++ .|+.|+|...+..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaal-s~dg~~v---------~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAAL-SLDGIQV---------NGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHH-HGCCSEE---------TTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHH-ccCCcEE---------CCEEEEEEeCCcc
Confidence 46888899999988666654 35999999999999999 5999998 8999999876654
No 168
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.75 E-value=0.0029 Score=63.01 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+-+|+||.|||-++|..|=.+-+-++++ +...+-|.|-|++.|+|.+|+..|+++.| +.++|++.
T Consensus 874 n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i---------~nr~V~l~ 942 (944)
T KOG4307|consen 874 NFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKI---------RNRVVSLR 942 (944)
T ss_pred CCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcc---------cceeEEEE
Confidence 4589999999999999997775444444 22334599999999999999999999998 78888774
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.75 E-value=0.001 Score=62.62 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----------CC-------CceEEEEeCCHHHHHHHHHHhCCCCcC
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----------TA-------GFQALVQFSDTETASSAKNALDGRSIP 60 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----------~~-------~~~aFV~f~~~e~A~~Av~~lng~~~~ 60 (331)
|+.+-|-.-|.|.+||+.+|.|+.|+|.+- .+ +-.|||||...+.|.+|.+.||...-|
T Consensus 237 enLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~~w 312 (484)
T KOG1855|consen 237 ENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQNW 312 (484)
T ss_pred ecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhhhh
Confidence 667777788999999999999999998761 11 223999999999999999999765554
No 170
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.61 E-value=0.066 Score=50.17 Aligned_cols=117 Identities=15% Similarity=0.153 Sum_probs=73.1
Q ss_pred CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCC
Q 020065 33 AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQ 112 (331)
Q Consensus 33 ~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (331)
+-+-|+|.|.|.|.-+-|++.-.. + .+++.|.|-.+.-.+.-. ... ++........
T Consensus 101 Rnge~lvrf~d~e~RdlalkRhkh--h--------~g~ryievYka~ge~f~~-iag-----g~s~e~~~fl-------- 156 (508)
T KOG1365|consen 101 RNGEALVRFVDPEGRDLALKRHKH--H--------MGTRYIEVYKATGEEFLK-IAG-----GTSNEAAPFL-------- 156 (508)
T ss_pred cccceEEEecCchhhhhhhHhhhh--h--------ccCCceeeeccCchhheE-ecC-----CccccCCCCC--------
Confidence 334699999999999999975332 2 267777776655443211 110 0000000000
Q ss_pred ccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHcc----CCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHH
Q 020065 113 LSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA----FGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKE 184 (331)
Q Consensus 113 ~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~----fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~ 184 (331)
.....+.|-...||+++++.++.++|.. -|.++.|.++++. .|- |||.|...++|..|+.
T Consensus 157 -----------sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGd-AFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 157 -----------SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGD-AFVLFACEEDAQFALR 224 (508)
T ss_pred -----------CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccc-eEEEecCHHHHHHHHH
Confidence 0012233457899999999999999963 2355666655542 344 9999999999999986
Q ss_pred H
Q 020065 185 A 185 (331)
Q Consensus 185 ~ 185 (331)
.
T Consensus 225 k 225 (508)
T KOG1365|consen 225 K 225 (508)
T ss_pred H
Confidence 5
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.59 E-value=0.0013 Score=58.16 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=49.6
Q ss_pred HHHHHHHc-cCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 143 DVLHMVFS-AFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 143 ~~L~~~Fs-~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
++|...|+ +||+|++++|-+.. .| .++|+|...++|.+|++.|||..+.++ +|...|+-.++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~G-NVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVG-NVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhh-hhhhhcccHHHHHHHHHHHcCccccCC---cceeeecCcCc
Confidence 44555556 99999998764322 23 499999999999999999999999999 99999985444
No 172
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.58 E-value=0.0056 Score=52.56 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=49.7
Q ss_pred CCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhc--CCcccCCCceEEEEEeecCCCc
Q 020065 140 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 140 vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ln--g~~i~~~~~~~l~v~~ak~~~~ 209 (331)
-..+.|+++|+.|+.+.....+++-+ ...|.|.+.++|.+|+..|+ +..+.+. .|+|-|++....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~~~~ 73 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQPTPI 73 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----SS-
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcccccc
Confidence 36689999999999999999998876 69999999999999999999 9999998 999999965554
No 173
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.53 E-value=0.0067 Score=54.87 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=55.3
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
..||.|+..+ .-....|..+|++||+|++++.- .++.+ -+|.|.++.+|.+||.. ||..|.+ .+-|.-....
T Consensus 197 D~WVTVfGFp-pg~~s~vL~~F~~cG~Vvkhv~~-~ngNw-MhirYssr~~A~KALsk-ng~ii~g----~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFP-PGQVSIVLNLFSRCGEVVKHVTP-SNGNW-MHIRYSSRTHAQKALSK-NGTIIDG----DVMIGVKPCT 268 (350)
T ss_pred cceEEEeccC-ccchhHHHHHHHhhCeeeeeecC-CCCce-EEEEecchhHHHHhhhh-cCeeecc----ceEEeeeecC
Confidence 5778888885 44556777899999999998776 55556 89999999999999985 7887665 4555554433
Q ss_pred C
Q 020065 208 D 208 (331)
Q Consensus 208 ~ 208 (331)
+
T Consensus 269 D 269 (350)
T KOG4285|consen 269 D 269 (350)
T ss_pred C
Confidence 3
No 174
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.46 E-value=0.0065 Score=52.17 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=47.3
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC--CCCcCcccCCCCCCCceEEEEeeccccc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTLRITYSAHTDL 83 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln--g~~~~~~~~~~~~~g~~i~v~~s~~~~l 83 (331)
.-..+.|+++|+.|+.+..+..+++- +...|.|.+.++|.+|...|+ +..+ .|..++|.|+.....
T Consensus 6 ~~~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~---------~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 6 PDNLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSF---------NGKRLRVYFGQPTPI 73 (184)
T ss_dssp ---HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEE---------TTEE-EEE----SS-
T ss_pred hhhHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhccccccc---------CCCceEEEEcccccc
Confidence 34568899999999999999998743 359999999999999999999 8877 799999999965433
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.36 E-value=0.015 Score=47.19 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=54.2
Q ss_pred CCCCcEEEEEe--ccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 123 EPESNVLLASI--ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 123 ~~~~~~l~v~v--~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++-.++.|.- .|+...-+...+..-.+.||+|.+|....+. .|.|.|.|..+|.+|+.+.+.. .-|. -++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~-~pgt---m~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSR-APGT---MFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCC-CCCc---eEE
Confidence 34445555333 4554444555666777999999999887665 4999999999999999999864 4454 777
Q ss_pred EEee
Q 020065 201 ISYS 204 (331)
Q Consensus 201 v~~a 204 (331)
++|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 7774
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.0079 Score=58.70 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=54.9
Q ss_pred CcEEEEEeccCCCCCCHH-------HHHHHHccCCCeeEEEEEc----cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLD-------VLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~-------~L~~~Fs~fG~V~~v~i~~----~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
.++++ |.|.| -|..+ .|..+|+++|+|+...+.- +..|+ .|++|.+..+|..|++.|||+.|...
T Consensus 58 D~vVv--v~g~P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~-lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVV--VDGAP-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGY-LFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEE--ECCCc-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeE-EEEEecChhhHHHHHHhcccceeccc
Confidence 45565 78885 33332 4678999999999988752 22455 99999999999999999999999765
Q ss_pred CceEEEEEe
Q 020065 195 GFCKLHISY 203 (331)
Q Consensus 195 ~~~~l~v~~ 203 (331)
.++.|..
T Consensus 134 --Htf~v~~ 140 (698)
T KOG2314|consen 134 --HTFFVRL 140 (698)
T ss_pred --ceEEeeh
Confidence 4666653
No 177
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.00 E-value=0.0049 Score=62.68 Aligned_cols=65 Identities=26% Similarity=0.322 Sum_probs=57.1
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
..|..-|..||+.||.|.++..++. -+.|.|+|.+.|.|..|.++|+|+++. .-|-+.+|.|++-
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs-------~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVS-------VTGAPSRVSFAKT 373 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCccc-------ccCCceeEEeccc
Confidence 4677889999999999999999883 357999999999999999999999885 4688899999873
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.95 E-value=0.039 Score=40.66 Aligned_cols=56 Identities=16% Similarity=0.233 Sum_probs=41.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 188 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng 188 (331)
..+++|. .|..+-..+|.++|+.||.|.---| .+. .|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt---FPkeWK~~DI~qlFspfG~I~VsWi-~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT---FPKEWKTSDIYQLFSPFGQIYVSWI-NDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE-----TT--HHHHHHHCCCCCCEEEEEE-CTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe---CchHhhhhhHHHHhccCCcEEEEEE-cCC---cEEEEeecHHHHHHHHHHhcc
Confidence 4466633 6789999999999999999853333 332 599999999999999999864
No 179
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.92 E-value=0.004 Score=57.30 Aligned_cols=69 Identities=22% Similarity=0.097 Sum_probs=58.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+|+|+..|..+|.|+++.+.. ...+++|+|+|.+..++..|+.. +...+ .++++++.+.
T Consensus 192 ~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~ 261 (285)
T KOG4210|consen 192 ELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSI---------GGRPLRLEED 261 (285)
T ss_pred ccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcc---------cCcccccccC
Confidence 4578999999999999999999998876 34567899999999999999987 66665 7899999887
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
...
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 643
No 180
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.87 E-value=0.0058 Score=62.20 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=61.6
Q ss_pred eccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCc
Q 020065 133 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 133 v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~ 209 (331)
+.|..-+.+...|..+|+.||.|.+++.+++-+ .|.|+|.+.+.|..|+++|+|.++.-- .-+.+|.|||....
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecccccc
Confidence 344455668889999999999999999988765 699999999999999999999997643 12899999986653
No 181
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.76 E-value=0.032 Score=42.99 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=43.6
Q ss_pred cHHHHHHhhcccCceeEEE-------------EeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 9 KVIFILQVFSAFGFVHKIT-------------TFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 9 tee~L~~lF~~fG~V~~i~-------------~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
....|-+.|++||+|.+.. ... .++.--|+|.+..+|.+|+. -||+.| .++..+-|
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~-~NG~i~--------~g~~mvGV 86 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQ-KNGTIF--------SGSLMVGV 86 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHT-TTTEEE--------TTCEEEEE
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHH-hCCeEE--------cCcEEEEE
Confidence 4566788899999998775 222 45679999999999999995 599877 24456667
Q ss_pred Eeec
Q 020065 76 TYSA 79 (331)
Q Consensus 76 ~~s~ 79 (331)
.+.+
T Consensus 87 ~~~~ 90 (100)
T PF05172_consen 87 KPCD 90 (100)
T ss_dssp EE-H
T ss_pred EEcH
Confidence 7764
No 182
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.76 E-value=0.03 Score=45.41 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=43.1
Q ss_pred HHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 13 ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 13 L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+..-.+.||+|.+|...-+ -.|.|.|.|..+|.+||.++.... .|..++++|-.
T Consensus 107 V~~~Ls~fGpI~SVT~cGr---qsavVvF~d~~SAC~Av~Af~s~~----------pgtm~qCsWqq 160 (166)
T PF15023_consen 107 VIQRLSVFGPIQSVTLCGR---QSAVVVFKDITSACKAVSAFQSRA----------PGTMFQCSWQQ 160 (166)
T ss_pred HHHHHHhcCCcceeeecCC---ceEEEEehhhHHHHHHHHhhcCCC----------CCceEEeeccc
Confidence 3344589999999987743 359999999999999999999753 58888887743
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.70 E-value=0.031 Score=41.18 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=36.4
Q ss_pred cHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC
Q 020065 9 KVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56 (331)
Q Consensus 9 tee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng 56 (331)
-..||.+||+.||.|.---|-. ..|||...+.+.|..|++.++-
T Consensus 21 K~~DI~qlFspfG~I~VsWi~d----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 21 KTSDIYQLFSPFGQIYVSWIND----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -HHHHHHHCCCCCCEEEEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred hhhhHHHHhccCCcEEEEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence 4579999999999987555543 3699999999999999998874
No 184
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.65 E-value=0.011 Score=54.80 Aligned_cols=69 Identities=16% Similarity=0.199 Sum_probs=56.4
Q ss_pred CCCCCcHHHHHHhhcccCcee--------EEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc
Q 020065 4 TLSLLKVIFILQVFSAFGFVH--------KITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 71 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~--------~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~ 71 (331)
++-.+|+++|.+.|.++|.|. +|.+.+ .+.|+-|.|.|.|.-.|+.||+-++++.| .+.
T Consensus 74 ~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf---------~gn 144 (351)
T KOG1995|consen 74 CPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF---------CGN 144 (351)
T ss_pred cCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc---------cCC
Confidence 344789999999999999984 233332 34667799999999999999999999998 679
Q ss_pred eEEEEeeccc
Q 020065 72 TLRITYSAHT 81 (331)
Q Consensus 72 ~i~v~~s~~~ 81 (331)
+|+|.++..+
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999887754
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.60 E-value=0.017 Score=54.00 Aligned_cols=73 Identities=16% Similarity=0.354 Sum_probs=55.1
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCC-------CeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 127 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 127 ~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~-------g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+|. |.||..+.|.|+++.||.-.|.|..+.++..-. .-.|||.|.|...+..|-..-|-..| +. ..|
T Consensus 8 ~vIq--vanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv-dr--ali 82 (479)
T KOG4676|consen 8 GVIQ--VANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV-DR--ALI 82 (479)
T ss_pred ceee--ecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee-ee--eEE
Confidence 3677 889999999999999999999999999876210 01599999999999988775554443 32 255
Q ss_pred EEEee
Q 020065 200 HISYS 204 (331)
Q Consensus 200 ~v~~a 204 (331)
.+-|.
T Consensus 83 v~p~~ 87 (479)
T KOG4676|consen 83 VRPYG 87 (479)
T ss_pred EEecC
Confidence 55554
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.13 E-value=0.09 Score=41.22 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=43.7
Q ss_pred CCCCcHHHHHHhhcccC-ceeEEEEeec--CCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 5 LSLLKVIFILQVFSAFG-FVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG-~V~~i~~~~~--~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
+|-++.++|..+.+.+- .|..+++++. .++..+++.|.+.++|+.-.+.+||+.|
T Consensus 22 ~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 22 PYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred cccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 45667778887777774 4667777772 3556699999999999999999999987
No 187
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.04 E-value=1.3 Score=41.30 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCcHHHHHHhhcccC--ceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 7 LLKVIFILQVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 7 ~vtee~L~~lF~~fG--~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
-.|++||.+....-| .|.+++++. +.+|+||+|...+..+.++.++.|-.++|
T Consensus 91 ~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~i 149 (498)
T KOG4849|consen 91 YTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTI 149 (498)
T ss_pred EeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhccccee
Confidence 345666665555555 466777776 45889999999999999999999988887
No 188
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.90 E-value=0.016 Score=51.29 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=45.4
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEee----------cCCCce------EEEEeCCHHHHHHHHHHhCCCCc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFE----------KTAGFQ------ALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~----------~~~~~~------aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
+-.+.-..|+++|+.||.|-+|-+-+ ++.+++ |+|||.+...|.+..+.|||+.|
T Consensus 83 Pp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 83 PPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred CCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44677788999999999999997754 112222 89999999999999999999988
No 189
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.81 E-value=0.28 Score=43.11 Aligned_cols=22 Identities=41% Similarity=0.741 Sum_probs=12.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 020065 278 PPASQSMPMMGNHPYMPPGSMP 299 (331)
Q Consensus 278 P~~~~~~p~~~~~~~~pp~~~p 299 (331)
|+..++.|.+.++.|||++.||
T Consensus 160 ppp~g~pp~~~pgv~mp~~g~p 181 (341)
T KOG2893|consen 160 PPPRGYPPAPAPGVYMPPPGMP 181 (341)
T ss_pred CCCCCCCCCCCCccccCCCCCC
Confidence 3334555556667777665554
No 190
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.72 E-value=0.0072 Score=61.97 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=65.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
.+.+|| ++||+..+++.+|+..|..||.|.+|.|-+-. ..-+|||.|.+.+.+-.|+..+.+..|..+ .+++
T Consensus 371 atrTLf--~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g---~~r~ 445 (975)
T KOG0112|consen 371 ATRTLF--LGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG---THRI 445 (975)
T ss_pred hhhhhh--hcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC---cccc
Confidence 477888 89999999999999999999999999875432 222599999999999999999999999888 7777
Q ss_pred Eeec
Q 020065 202 SYSR 205 (331)
Q Consensus 202 ~~ak 205 (331)
.|..
T Consensus 446 glG~ 449 (975)
T KOG0112|consen 446 GLGQ 449 (975)
T ss_pred cccc
Confidence 7764
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.42 E-value=0.17 Score=35.23 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=41.2
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccC---CCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHh
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAF---GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 186 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~f---G~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~l 186 (331)
.|+ |.++ ++.+.++++..|..| ....+|.-+.+. .|=|.|.|.+.|.+|+.+|
T Consensus 7 avh--irGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVH--IRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEE--EEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 355 5566 467999999999999 135577666665 3889999999999999875
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.01 E-value=0.079 Score=48.15 Aligned_cols=47 Identities=30% Similarity=0.339 Sum_probs=40.4
Q ss_pred HHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 10 VIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 10 ee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
-..|.++|+++|+|.+++.- +++++-.|.|.+..+|++|+. .||+-|
T Consensus 210 ~s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii 256 (350)
T KOG4285|consen 210 VSIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTII 256 (350)
T ss_pred hhHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeee
Confidence 34678999999999998876 467899999999999999996 588766
No 193
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.64 E-value=0.035 Score=54.68 Aligned_cols=70 Identities=16% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCcHHHHHHhhc-ccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccc
Q 020065 7 LLKVIFILQVFS-AFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS 84 (331)
Q Consensus 7 ~vtee~L~~lF~-~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~ 84 (331)
-.|.-.|+.|.. ..|.|.+..|.+ -|..|||.|.+.++|...+.+|||..+ +...++.|.+.|....+|.
T Consensus 455 PFTlgQLkelL~rtgg~Vee~WmDk--IKShCyV~yss~eEA~atr~AlhnV~W------P~sNPK~L~adf~~~deld 525 (718)
T KOG2416|consen 455 PFTLGQLKELLGRTGGNVEEFWMDK--IKSHCYVSYSSVEEAAATREALHNVQW------PPSNPKHLIADFVRADELD 525 (718)
T ss_pred cchHHHHHHHHhhccCchHHHHHHH--hhcceeEecccHHHHHHHHHHHhcccc------CCCCCceeEeeecchhHHH
Confidence 457888999998 556677764444 334699999999999999999999876 3357899999999877654
No 194
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=93.44 E-value=0.078 Score=50.28 Aligned_cols=74 Identities=26% Similarity=0.221 Sum_probs=54.4
Q ss_pred EeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCc-ccCCCceEEEEEeecCCCcc
Q 020065 132 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCKLHISYSRHTDLS 210 (331)
Q Consensus 132 ~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~-i~~~~~~~l~v~~ak~~~~~ 210 (331)
+++||.+.++.++|..+|...-.-..=.++-++ | ++||.+.|..-|.+|++.++|+. +.|+ .+.|.++-.+..+
T Consensus 5 yignL~p~~~psdl~svfg~ak~~~~g~fl~k~-g-yafvd~pdq~wa~kaie~~sgk~elqGk---r~e~~~sv~kkqr 79 (584)
T KOG2193|consen 5 YIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-G-YAFVDCPDQQWANKAIETLSGKVELQGK---RQEVEHSVPKKQR 79 (584)
T ss_pred cccccCCCCChHHHHHHhccccCCCCcceeeec-c-eeeccCCchhhhhhhHHhhchhhhhcCc---eeeccchhhHHHH
Confidence 399999999999999999765211111233333 4 59999999999999999999875 4555 8888887444433
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.43 E-value=0.036 Score=51.14 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=54.9
Q ss_pred EEeccCCCCCCH-HHHH--HHHccCCCeeEEEEEccC------CC-eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 131 ASIENMQYAVTL-DVLH--MVFSAFGPVQKIAMFDKN------GG-LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 131 v~v~nl~~~vt~-~~L~--~~Fs~fG~V~~v~i~~~~------~g-~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
|+|-.|+..+.+ +.|. +.|..||.|.+|.+.++. .+ ..++|.|...|+|..||...+|..+.++ .|+
T Consensus 80 vyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~---~lk 156 (327)
T KOG2068|consen 80 VYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR---ALK 156 (327)
T ss_pred hhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---hhH
Confidence 345555555544 3443 589999999999988743 11 2379999999999999999999998888 777
Q ss_pred EEeecCC
Q 020065 201 ISYSRHT 207 (331)
Q Consensus 201 v~~ak~~ 207 (331)
.+|...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 7777433
No 196
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.70 E-value=1.8 Score=33.89 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=48.2
Q ss_pred eccCCCCCCHHHHHHHHccCCC-eeEEEEEccCC--CeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 133 IENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 133 v~nl~~~vt~~~L~~~Fs~fG~-V~~v~i~~~~~--g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+...++-++.+.|..+.+.+-. |..++|.++.. -+-++++|.+.+.|..=.+..||+.+..-
T Consensus 18 l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 18 LAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred EEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 5666777888888777776654 56677887653 25589999999999999999999987543
No 197
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.51 E-value=0.05 Score=50.21 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=49.1
Q ss_pred cHHHHH--HhhcccCceeEEEEeecCC-----Cc--eEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 9 KVIFIL--QVFSAFGFVHKITTFEKTA-----GF--QALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 9 tee~L~--~lF~~fG~V~~i~~~~~~~-----~~--~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.|+.|. +.|.+||.|.+|++.++.+ ++ -++|+|+..|+|..||...+|... .|+.|+..+..
T Consensus 91 de~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~---------dg~~lka~~gt 161 (327)
T KOG2068|consen 91 DESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVD---------DGRALKASLGT 161 (327)
T ss_pred chhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHh---------hhhhhHHhhCC
Confidence 344443 4688999999999887431 11 289999999999999999999866 78888887766
Q ss_pred cc
Q 020065 80 HT 81 (331)
Q Consensus 80 ~~ 81 (331)
.+
T Consensus 162 tk 163 (327)
T KOG2068|consen 162 TK 163 (327)
T ss_pred Cc
Confidence 44
No 198
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.39 E-value=0.45 Score=33.62 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 139 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 139 ~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
.++.++++..+..|+- .+| ..++.| =||-|.|.++|.++....||..+++-
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~tG--fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDRTG--FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecCCE--EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 6799999999999983 343 344433 37999999999999999999998875
No 199
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.24 E-value=0.59 Score=46.24 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=60.2
Q ss_pred CCCcEEEEEeccCCC-CCCHHHHHHHHccC----CCeeEEEEEcc-----------------------------------
Q 020065 124 PESNVLLASIENMQY-AVTLDVLHMVFSAF----GPVQKIAMFDK----------------------------------- 163 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~-~vt~~~L~~~Fs~f----G~V~~v~i~~~----------------------------------- 163 (331)
..++.|- |-||++ .|...+|..+|+.| |.|.+|.|...
T Consensus 172 ~~T~RLA--VvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 172 EETKRLA--VVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccceee--EeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3466777 667765 68889999888765 48999988210
Q ss_pred ----------------CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 164 ----------------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 164 ----------------~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
-+=++|.|+|++++.|.+..+.++|..+... +..|.+.|-
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRFI 305 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRFI 305 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeeec
Confidence 0125699999999999999999999998877 667777774
No 200
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.05 E-value=0.94 Score=32.65 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=40.8
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCe-----eEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPV-----QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V-----~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
.|++.++.- +.++..+|..+++.-+.| -+|.|+.+ ++||+=.. +.|..+++.|++..+.++ .|+|+
T Consensus 2 rl~in~Gr~-dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~gk---~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRK-DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIKGK---KVRVE 72 (74)
T ss_dssp EEEES-SGG-GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SSS-------EE
T ss_pred EEEEEcccc-cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCCCe---eEEEE
Confidence 366666665 688888888888777654 56666654 48887755 478999999999999999 88887
Q ss_pred ee
Q 020065 203 YS 204 (331)
Q Consensus 203 ~a 204 (331)
-|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 53
No 201
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.51 E-value=0.55 Score=32.72 Aligned_cols=44 Identities=36% Similarity=0.362 Sum_probs=35.2
Q ss_pred CCcHHHHHHhhccc----CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHh
Q 020065 7 LLKVIFILQVFSAF----GFVHKITTFEKTAGFQALVQFSDTETASSAKNAL 54 (331)
Q Consensus 7 ~vtee~L~~lF~~f----G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~l 54 (331)
+++.++|+..|..| + ..+|.-+... .|=|.|.|.+.|.+|+.+|
T Consensus 15 ~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCCHHHHHHHHHHhcccCC-CceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 68999999999999 4 3566544432 4999999999999999865
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.40 E-value=0.68 Score=34.68 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=47.9
Q ss_pred EEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccc-ccccCccccCCCCCCCCCCCcccCccCCccc
Q 020065 37 ALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLS-VKFQSHRSRDYTNPYLPVAPSAIDASGQLSV 115 (331)
Q Consensus 37 aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (331)
|+|+|.+.+-|++-++ +.-..++ +.++.++|.-+-..... .+++-..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~-------l~~~~~~V~v~P~~~~~~~k~qv~~------------------------ 48 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVP-------LEDCCVRVKVSPVTLGHLQKFQVFS------------------------ 48 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEE-------ECCEEEEEEEEeEecCCceEEEEEE------------------------
Confidence 7899999999999886 2333332 35666666544321110 1111000
Q ss_pred cCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCC
Q 020065 116 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG 166 (331)
Q Consensus 116 ~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g 166 (331)
....++++ +.|++...++|.|++ ...|.+-+.++|
T Consensus 49 -------~vs~rtVl--vsgip~~l~ee~l~D-------~LeIhFqK~snG 83 (88)
T PF07292_consen 49 -------GVSKRTVL--VSGIPDVLDEEELRD-------KLEIHFQKPSNG 83 (88)
T ss_pred -------cccCCEEE--EeCCCCCCChhhhee-------eEEEEEecCCCC
Confidence 11256677 789999999999987 344445554444
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.30 E-value=0.87 Score=32.84 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=34.3
Q ss_pred CCcHHHHHHhhcccCce-----eEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 7 LLKVIFILQVFSAFGFV-----HKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V-----~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.++..+|-.++..-+.| -+|.+.. .++||+-... .|..+++.|++..+ .|++|+|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~~-~a~~v~~~l~~~~~---------~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPEE-VAEKVLEALNGKKI---------KGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-TT--HHHHHHHHTT--S---------SS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECHH-HHHHHHHHhcCCCC---------CCeeEEEEEC
Confidence 45667777777766544 4676665 4799997654 88999999999987 8999999754
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.99 E-value=0.36 Score=41.23 Aligned_cols=79 Identities=13% Similarity=0.150 Sum_probs=50.9
Q ss_pred EEEeccCCCCCCHHHHHHHHcc-CCCeeEEEEEc-----c----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCC--ce
Q 020065 130 LASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFD-----K----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGG--FC 197 (331)
Q Consensus 130 ~v~v~nl~~~vt~~~L~~~Fs~-fG~V~~v~i~~-----~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~--~~ 197 (331)
-|.|.+||+++|++++.+..+. ++.-.....+. . ..-..|+|.|.+.++...-...++|+.+.+.. ..
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~ 88 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEY 88 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EE
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCc
Confidence 3448999999999999998887 77663322221 1 11135999999999999999999998776542 34
Q ss_pred EEEEEeecCCC
Q 020065 198 KLHISYSRHTD 208 (331)
Q Consensus 198 ~l~v~~ak~~~ 208 (331)
...|+||--..
T Consensus 89 ~~~VE~Apyqk 99 (176)
T PF03467_consen 89 PAVVEFAPYQK 99 (176)
T ss_dssp EEEEEE-SS--
T ss_pred ceeEEEcchhc
Confidence 67788885443
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.67 E-value=0.14 Score=49.28 Aligned_cols=62 Identities=16% Similarity=0.240 Sum_probs=50.1
Q ss_pred CcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 8 LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 8 vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
-|.++|..-|.+||+|++|.+-.. . -.|.|+|.+..+|-+|.. ..+..| .++.|+|.|-+..
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~-~-~~a~vTF~t~aeag~a~~-s~~avl---------nnr~iKl~whnps 446 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYS-S-LHAVVTFKTRAEAGEAYA-SHGAVL---------NNRFIKLFWHNPS 446 (526)
T ss_pred chHhhhhhhhhhcCccccccccCc-h-hhheeeeeccccccchhc-ccccee---------cCceeEEEEecCC
Confidence 367889999999999999987653 2 259999999999988774 466666 8999999987754
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.91 E-value=1.6 Score=30.89 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=39.3
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
.+|-++|+..+..|+- .+|+.-+ .| =||.|.+.++|+++.+..||+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~--tG--fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR--TG--FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC--CE--EEEEECChHHHHHHHHhcCCCEE
Confidence 6889999999999976 4444322 33 57999999999999999999877
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=88.19 E-value=2.4 Score=40.93 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=55.1
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCC-CeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG-~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+..|. |.-+|..+|..+|..++..|= .|..|+|+++. +.+.++|+|.+.++|..-.+.+||..+..-
T Consensus 74 ~~mLc--ilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 74 STMLC--ILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CcEEE--EEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 56677 778888999999988776554 58888998865 336689999999999999999999987654
No 208
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=88.05 E-value=1.4 Score=43.09 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-------CCC---eeEEEEcCCHHHHHHHHHHhc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-------NGG---LQALIQYPDVQTAVVAKEALE 187 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-------~~g---~~afV~f~~~~~A~~Ai~~ln 187 (331)
-++.+| |+.|+.+++|++|...|..||.+..=-=.+. .+| + +|+-|++..+...-+.++.
T Consensus 258 ~S~KVF--vGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~Y-vflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 258 YSRKVF--VGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGY-VFLVFEDERSVQSLLSACS 327 (520)
T ss_pred ccccee--ecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccE-EEEEecchHHHHHHHHHHh
Confidence 355566 9999999999999999999998742111010 023 5 9999999988887777664
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.70 E-value=1.5 Score=39.95 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=57.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----------CCeeEEEEcCCHHHHHHH----HHHhc--C
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----------GGLQALIQYPDVQTAVVA----KEALE--G 188 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----------~g~~afV~f~~~~~A~~A----i~~ln--g 188 (331)
++.|+ +.|+..+++...+...|.+||.|+.|.++.+. ...+..+.|-+.+.+..- ++.|. .
T Consensus 15 TRSLL--feNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLL--FENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHH--HhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 56677 78999999999999999999999999998755 112578999999877653 22332 2
Q ss_pred CcccCCCceEEEEEeecCC
Q 020065 189 HCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 189 ~~i~~~~~~~l~v~~ak~~ 207 (331)
+.+... .|+|+|....
T Consensus 93 ~~L~S~---~L~lsFV~l~ 108 (309)
T PF10567_consen 93 TKLKSE---SLTLSFVSLN 108 (309)
T ss_pred HhcCCc---ceeEEEEEEe
Confidence 334455 8999988643
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=86.93 E-value=0.42 Score=46.16 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=51.7
Q ss_pred CHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 141 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 141 t~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
|.++|...|..||+|..|.+-...- .|.|.|.+..+|-+|-. .++..|.++ .|+|.|-+...
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~--~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSL--HAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchh--hheeeeeccccccchhc-cccceecCc---eeEEEEecCCc
Confidence 7799999999999999998765533 59999999999977765 367888998 99999987643
No 211
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=84.29 E-value=4.6 Score=40.03 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=47.0
Q ss_pred EeccCCCCCCHHHHHHHHcc--CCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHh-------cCCcccCC
Q 020065 132 SIENMQYAVTLDVLHMVFSA--FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-------EGHCIYDG 194 (331)
Q Consensus 132 ~v~nl~~~vt~~~L~~~Fs~--fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~l-------ng~~i~~~ 194 (331)
.+.-++++..+|+++.||.- +-.+.++.+-..++ -||.|++.++|+.|.+.| +|+.|+.+
T Consensus 179 ilREIpettp~e~Vk~lf~~encPk~iscefa~N~n---WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 179 ILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN---WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred EEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc---eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 37789999999999999965 66778877766553 899999999999996555 45555543
No 212
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=82.37 E-value=1.1 Score=39.99 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=42.1
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCC
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~ 57 (331)
+.--++.|.|++.|+.||.|+..++.- .+..+-++|+|...-.|.+|.+.++-.
T Consensus 39 l~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 39 LMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccC
Confidence 444578899999999999998665443 333345999999999999999988543
No 213
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.34 E-value=2.5 Score=40.76 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=43.4
Q ss_pred CCcHHHHHHhhccc-CceeEEEEeecC--CCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 7 LLKVIFILQVFSAF-GFVHKITTFEKT--AGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 7 ~vtee~L~~lF~~f-G~V~~i~~~~~~--~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
-+|-.||-.++..| -.|.+|+++|+. ++...+|.|.+.++|..-.+.+||+.|
T Consensus 85 ~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred cccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 46777777777766 458899988832 455699999999999999999999988
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=11 Score=37.69 Aligned_cols=60 Identities=18% Similarity=0.246 Sum_probs=47.4
Q ss_pred CCCCCC-CCcHHHHHHhhccc----CceeEEEEee--------------cC-----------------------------
Q 020065 1 MCLTLS-LLKVIFILQVFSAF----GFVHKITTFE--------------KT----------------------------- 32 (331)
Q Consensus 1 ~~~~~~-~vtee~L~~lF~~f----G~V~~i~~~~--------------~~----------------------------- 32 (331)
+|+-.+ .|..++|.-+|+.| |.|.+|.|.+ +.
T Consensus 179 VvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~~~~kL 258 (650)
T KOG2318|consen 179 VVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDVDREKL 258 (650)
T ss_pred EeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhHHHHHH
Confidence 366666 57889999999877 6899998864 00
Q ss_pred --------CCceEEEEeCCHHHHHHHHHHhCCCCcC
Q 020065 33 --------AGFQALVQFSDTETASSAKNALDGRSIP 60 (331)
Q Consensus 33 --------~~~~aFV~f~~~e~A~~Av~~lng~~~~ 60 (331)
.=.||.|+|.++++|.+..+.++|.++-
T Consensus 259 R~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 259 RQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred HHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 1135999999999999999999999883
No 215
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.49 E-value=72 Score=31.24 Aligned_cols=15 Identities=40% Similarity=0.780 Sum_probs=10.3
Q ss_pred HHHHHHHHccCCCee
Q 020065 142 LDVLHMVFSAFGPVQ 156 (331)
Q Consensus 142 ~~~L~~~Fs~fG~V~ 156 (331)
...|=.||+.||.|.
T Consensus 244 R~~lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 244 RTALGQIFEIFGPVK 258 (483)
T ss_pred cccchhhhhhhcccC
Confidence 345667888888774
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=71.48 E-value=3.2 Score=41.89 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=53.8
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
..++| |+|+.+.+..+-++.+...+|.|...+... | +|.+|.....+.+|+..|+-..+.++
T Consensus 40 ~~~vf--v~~~~~~~s~~~~~~il~~~g~v~s~kr~~----f-gf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 40 RDTVF--VGNISYLVSQEFWKSILAKSGFVPSWKRDK----F-GFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CceeE--ecchhhhhhHHHHHHHHhhCCcchhhhhhh----h-cccchhhHHHHHHHHHHhcccCCCcc
Confidence 44555 889999999999999999999988776554 5 99999999999999999998888877
No 217
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.23 E-value=1.2 Score=40.16 Aligned_cols=52 Identities=27% Similarity=0.287 Sum_probs=36.3
Q ss_pred CcHHHHHHhhcccCceeEEEEee----------cCCC----ce---------EEEEeCCHHHHHHHHHHhCCCCc
Q 020065 8 LKVIFILQVFSAFGFVHKITTFE----------KTAG----FQ---------ALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 8 vtee~L~~lF~~fG~V~~i~~~~----------~~~~----~~---------aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
-+|+.|+..|+.||+|.+|.|.- +.++ +| |||+|..-.--..|+++|.|..+
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 57888999999999998776532 1221 11 55666666666778888888765
No 218
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=67.01 E-value=7.4 Score=31.73 Aligned_cols=38 Identities=11% Similarity=0.059 Sum_probs=30.7
Q ss_pred cEEEEEeccCCCC-CCHHHHHHHHccCCCeeEEEEEccC
Q 020065 127 NVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKN 164 (331)
Q Consensus 127 ~~l~v~v~nl~~~-vt~~~L~~~Fs~fG~V~~v~i~~~~ 164 (331)
.-++|-|.|||.. .+++.|+.+-+..|.+.++..-+.+
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 3467778999875 6899999999999999998765443
No 219
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=66.21 E-value=2.3 Score=30.09 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=31.2
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
++|++.|..+....+++-+ .+|..|.|.++|..++..++
T Consensus 27 ~~v~~~~~~~~~f~k~vkL------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh------hhccCCCCHHHHHHHHHHhh
Confidence 5888888888777766544 39999999999999887764
No 220
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=65.58 E-value=23 Score=33.93 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=30.7
Q ss_pred eeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 167 LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 167 ~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
++|.|+|++++.+.....+++|....+. ...+.+.|.
T Consensus 259 YyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRfv 295 (622)
T COG5638 259 YYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRFV 295 (622)
T ss_pred EEEEEEeccchhhHHHHhccCccccccc-cceeeeeec
Confidence 5689999999999999999999998765 446666665
No 221
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=65.48 E-value=5.6 Score=33.90 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=38.8
Q ss_pred CCCCCCcHHHHHHhhcc-cCceeEEEEee--------c-CCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 3 LTLSLLKVIFILQVFSA-FGFVHKITTFE--------K-TAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~-fG~V~~i~~~~--------~-~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
+.+..+||+++++.++. ++.-.+...+. + ..-..|+|.|.+.+++..-++.++|..|
T Consensus 14 ~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 14 RLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp EE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 35788999999999888 77663222222 1 1113499999999999999999999877
No 222
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.22 E-value=61 Score=31.74 Aligned_cols=13 Identities=23% Similarity=0.307 Sum_probs=6.6
Q ss_pred EEcCCHHHHHHHH
Q 020065 171 IQYPDVQTAVVAK 183 (331)
Q Consensus 171 V~f~~~~~A~~Ai 183 (331)
++|.|-|.=+.|+
T Consensus 319 ~dfSDDEkEaeak 331 (483)
T KOG2236|consen 319 QDFSDDEKEAEAK 331 (483)
T ss_pred hccchHHHHHHHH
Confidence 5676654433333
No 223
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.83 E-value=5.7 Score=33.78 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=42.6
Q ss_pred HHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 12 FILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 12 ~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
...+||.+|-+..-..+++ +.+.--|.|.+.+.|..|...+++..|. ++..++.-|+...
T Consensus 31 ~~~~lFrq~n~~~~fq~lr--sfrrvRi~f~~p~~a~~a~i~~~~~~f~--------~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLR--SFRRVRINFSNPEAAADARIKLHSTSFN--------GKNELKLYFAQPG 90 (193)
T ss_pred HHHhHHhhhCcchHHHHHH--hhceeEEeccChhHHHHHHHHhhhcccC--------CCceEEEEEccCC
Confidence 4566777665554444444 3335889999999999999999999982 3337777777644
No 224
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=60.04 E-value=1.4e+02 Score=29.59 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=8.1
Q ss_pred EEEEeCCHHHHHHHHHH
Q 020065 37 ALVQFSDTETASSAKNA 53 (331)
Q Consensus 37 aFV~f~~~e~A~~Av~~ 53 (331)
|+|+=.+.|..++|++.
T Consensus 207 ~~Isadt~eki~~Ai~v 223 (554)
T KOG0119|consen 207 CLISADTQEKIKKAIAV 223 (554)
T ss_pred EEEecchHHHHHHHHHH
Confidence 45554444444444443
No 225
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=58.43 E-value=63 Score=30.27 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHhhccc------CceeEEEEeecCCCceEEEEeCCHHHH
Q 020065 5 LSLLKVIFILQVFSAF------GFVHKITTFEKTAGFQALVQFSDTETA 47 (331)
Q Consensus 5 ~~~vtee~L~~lF~~f------G~V~~i~~~~~~~~~~aFV~f~~~e~A 47 (331)
.++-+++++.++++.| |.|..-++.+-... .+||.+....++
T Consensus 10 ~~~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~~~-g~~Vdig~k~~g 57 (318)
T PRK07400 10 DIGFTHEDFAALLDKYDYHFKPGDIVNGTVFSLEPR-GALIDIGAKTAA 57 (318)
T ss_pred ccCCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEECC-EEEEEECCCeEE
Confidence 3466788888888665 77766655552223 488887654333
No 226
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=56.72 E-value=34 Score=26.90 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=17.4
Q ss_pred HHHHHhhcccCceeEEEEee
Q 020065 11 IFILQVFSAFGFVHKITTFE 30 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~ 30 (331)
+.|-+.|+.-|+|.+|....
T Consensus 16 nKLSDYfeSPGKI~svItvt 35 (145)
T TIGR02542 16 NKLSDYFESPGKIQSVITVT 35 (145)
T ss_pred chhhHHhcCCCceEEEEEEe
Confidence 57889999999999997765
No 227
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=55.70 E-value=23 Score=35.36 Aligned_cols=46 Identities=13% Similarity=0.060 Sum_probs=34.0
Q ss_pred CCcHHHHHHhhcc--cCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC
Q 020065 7 LLKVIFILQVFSA--FGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 7 ~vtee~L~~lF~~--fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
..-+|+++.||.- +=++.++.+--.. + =||+|++.+||..|.++|.
T Consensus 186 ttp~e~Vk~lf~~encPk~iscefa~N~--n-WyITfesd~DAQqAykylr 233 (684)
T KOG2591|consen 186 TTPIEVVKALFKGENCPKVISCEFAHND--N-WYITFESDTDAQQAYKYLR 233 (684)
T ss_pred CChHHHHHHHhccCCCCCceeeeeeecC--c-eEEEeecchhHHHHHHHHH
Confidence 3456888889874 4566777665432 2 6999999999999988664
No 228
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.66 E-value=2.8 Score=37.89 Aligned_cols=66 Identities=24% Similarity=0.414 Sum_probs=42.1
Q ss_pred CCHHHHHHHHccCCCeeEEEEEc----------cC-----CC--------eeEEEEcCCHHHHHHHHHHhcCCcccCCC-
Q 020065 140 VTLDVLHMVFSAFGPVQKIAMFD----------KN-----GG--------LQALIQYPDVQTAVVAKEALEGHCIYDGG- 195 (331)
Q Consensus 140 vt~~~L~~~Fs~fG~V~~v~i~~----------~~-----~g--------~~afV~f~~~~~A~~Ai~~lng~~i~~~~- 195 (331)
-+++.|+..|+.||.|..|.|.- +. .| |-|||+|-..-.-..|+.+|.|..+..++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 48899999999999998887621 11 11 22556666666666777777776654321
Q ss_pred ----ceEEEEEeec
Q 020065 196 ----FCKLHISYSR 205 (331)
Q Consensus 196 ----~~~l~v~~ak 205 (331)
-..++|+|.+
T Consensus 253 ~~ffqanvkvdfdr 266 (445)
T KOG2891|consen 253 DGFFQANVKVDFDR 266 (445)
T ss_pred Ccccccccccccch
Confidence 1156666654
No 229
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=49.69 E-value=2.2e+02 Score=26.39 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeecC-----------CCceEEEEeCCHHHHHHHHH----HhCCCCcCcccCCCCCCC
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEKT-----------AGFQALVQFSDTETASSAKN----ALDGRSIPRYLLPENMGP 70 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~~-----------~~~~aFV~f~~~e~A~~Av~----~lng~~~~~~~~~~~~~g 70 (331)
-+++-..+-..|.+||.|++|-+++.. ...-.++.|-+.+.+..-.. .|+-..- .+..
T Consensus 25 ~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~-------~L~S 97 (309)
T PF10567_consen 25 NSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT-------KLKS 97 (309)
T ss_pred ccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH-------hcCC
Confidence 466777778889999999999988732 12248999999987755332 2222111 1367
Q ss_pred ceEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHH-HHHH
Q 020065 71 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVL-HMVF 149 (331)
Q Consensus 71 ~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L-~~~F 149 (331)
..|.++|-.-+............++ +..+. ...+.-+.. ...++.|.|-.. ..|+.++| .+.+
T Consensus 98 ~~L~lsFV~l~y~~~~~~~~~~~~~-~~~~~-------~~L~~~i~~-----~gATRSl~IeF~---~~~~~~dl~~~kL 161 (309)
T PF10567_consen 98 ESLTLSFVSLNYQKKTDPNDEEADF-SDYLV-------ASLQYNIIN-----RGATRSLAIEFK---DPVDKDDLIEKKL 161 (309)
T ss_pred cceeEEEEEEeccccccccccccch-hhHHh-------hhhhheeec-----CCcceEEEEEec---CccchhHHHHHhh
Confidence 7888888763221111001111111 00000 000000000 012566764443 34433333 2222
Q ss_pred ---ccCC----CeeEEEEEccC------CCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 150 ---SAFG----PVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 150 ---s~fG----~V~~v~i~~~~------~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
..=+ -|++|.++... +.-+|.+.|-++..|...++.|.-.
T Consensus 162 ~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 162 PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 2222 36666665421 1125999999999999999988744
No 230
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=48.77 E-value=99 Score=32.40 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.7
Q ss_pred EEEEeCCHHHH
Q 020065 37 ALVQFSDTETA 47 (331)
Q Consensus 37 aFV~f~~~e~A 47 (331)
..|+|.+....
T Consensus 295 ~~~r~~~~~~~ 305 (756)
T KOG2375|consen 295 PGVRFENEDFN 305 (756)
T ss_pred cchhhhhhhhh
Confidence 34444444444
No 231
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=47.90 E-value=3e+02 Score=27.48 Aligned_cols=47 Identities=23% Similarity=0.171 Sum_probs=32.4
Q ss_pred HHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCC
Q 020065 10 VIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 10 ee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~ 57 (331)
|.||++-|+-+-.-.-+..|.+.. +++=+.|.+++||++-.+.+..+
T Consensus 92 dqELY~nf~y~q~r~ffhtFegdd-c~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 92 DQELYQNFEYRQPRTFFHTFEGDD-CQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred hHHhhhhceeccCccceeeecccc-ceeeecccCHHHHHHHHHHHHHH
Confidence 456777776554444445555433 36778999999999988877654
No 232
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=46.66 E-value=13 Score=22.85 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=10.0
Q ss_pred CCcHHHHHHhhcccCc
Q 020065 7 LLKVIFILQVFSAFGF 22 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~ 22 (331)
|++++.|+++|.+.+.
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 8899999999987653
No 233
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=46.56 E-value=96 Score=23.16 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=34.0
Q ss_pred HHHHHHHHccCC-CeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhc
Q 020065 142 LDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 187 (331)
Q Consensus 142 ~~~L~~~Fs~fG-~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ln 187 (331)
.+.++++++..| +++.+.+....-.+...+++.|.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 355777777776 5666666555545668899999999998887765
No 234
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=45.44 E-value=81 Score=22.40 Aligned_cols=46 Identities=24% Similarity=0.217 Sum_probs=34.3
Q ss_pred CHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhc
Q 020065 141 TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 187 (331)
Q Consensus 141 t~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ln 187 (331)
..+++.+....+| +.-.++.....|.+.|+-+.+.+.+.++++.|.
T Consensus 35 ~i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 35 EIDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3467778889999 555566555445568999999999999888874
No 235
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=45.26 E-value=10 Score=38.45 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=43.2
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
..|.++++-+..+....|.|.++...+ |||++|.+++-+.+|+..++-..+
T Consensus 48 ~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~ 98 (668)
T KOG2253|consen 48 ISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNI 98 (668)
T ss_pred hhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCC
Confidence 456788888999999999998876544 799999999999999998887665
No 236
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=45.05 E-value=18 Score=30.80 Aligned_cols=59 Identities=10% Similarity=0.230 Sum_probs=40.7
Q ss_pred HHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 144 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 144 ~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
...++|..|-+..-..+++..+ ..-|-|.+.+.|+.|...+++..+.+++ .++.-|+..
T Consensus 31 ~~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~~--~~k~yfaQ~ 89 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGKN--ELKLYFAQP 89 (193)
T ss_pred HHHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCCc--eEEEEEccC
Confidence 4445666554444334444443 3778999999999999999999998872 566666543
No 237
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=44.03 E-value=25 Score=32.72 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred EEEEeCCHHHHHHHHHHhCCC
Q 020065 37 ALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 37 aFV~f~~~e~A~~Av~~lng~ 57 (331)
|||+|.+.++|..|.+.+...
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~ 21 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK 21 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC
Confidence 799999999999999976653
No 238
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=41.44 E-value=36 Score=28.69 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeecCCCce-EEEEeCC
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEKTAGFQ-ALVQFSD 43 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~-aFV~f~~ 43 (331)
-++|-|+|+++|.+|+. ++++-+..++.+ -+|.|.+
T Consensus 107 hgcT~e~I~~~F~~ys~--~~~~e~~~~~eFD~~i~Fed 143 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSD--NVHCEEMDNGEFDYLIYFED 143 (175)
T ss_pred CCcCHHHHHHHHHHhcC--CeEEEeecCCCCCEEEEecC
Confidence 47899999999999997 555544334444 5567764
No 239
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=40.49 E-value=53 Score=22.83 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=15.8
Q ss_pred HHHHHHHccCCCeeEEEE
Q 020065 143 DVLHMVFSAFGPVQKIAM 160 (331)
Q Consensus 143 ~~L~~~Fs~fG~V~~v~i 160 (331)
++|++.|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 679999999999987765
No 240
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=39.20 E-value=1.1e+02 Score=21.65 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=30.8
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
++|.+..+.+| +.-..+.--..|+..|+-+.+.++|.++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 444444331126778888889999999988774
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=39.19 E-value=71 Score=29.30 Aligned_cols=46 Identities=7% Similarity=0.105 Sum_probs=33.2
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHH
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 177 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~ 177 (331)
|++.||+.++-..+|+....+-|-+---.-.....|- ||++|.|..
T Consensus 333 i~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k-~flh~~~~~ 378 (396)
T KOG4410|consen 333 IKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGK-CFLHFGNRK 378 (396)
T ss_pred eeeccCccccchHHHHHHHHhcCCCceeEeeecCCcc-eeEecCCcc
Confidence 4489999999999999998887755332223333344 999999863
No 242
>PHA03378 EBNA-3B; Provisional
Probab=38.79 E-value=2.4e+02 Score=29.33 Aligned_cols=11 Identities=18% Similarity=0.039 Sum_probs=7.5
Q ss_pred CcHHHHHHhhc
Q 020065 8 LKVIFILQVFS 18 (331)
Q Consensus 8 vtee~L~~lF~ 18 (331)
+|+++|...|.
T Consensus 327 Ltsedi~~Afa 337 (991)
T PHA03378 327 LTSEEIDLAYA 337 (991)
T ss_pred chHHHHHHHHH
Confidence 66777777664
No 243
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=38.76 E-value=1.9e+02 Score=28.06 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=11.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCC
Q 020065 37 ALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 37 aFV~f~~~e~A~~Av~~lng~ 57 (331)
|-+.+.|.+.-..-++.|+..
T Consensus 42 a~lk~KDp~qi~~~m~kldem 62 (487)
T KOG4672|consen 42 AVLKYKDPDQITSKMEKLDEM 62 (487)
T ss_pred hhhccCCHHHHHHHHHhhccc
Confidence 555555555555555555543
No 244
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=37.37 E-value=22 Score=24.81 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=27.7
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecC--CCceEEE
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKT--AGFQALV 39 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~--~~~~aFV 39 (331)
++|+.-|.+|...|-+-=+|.++.+..|+ .+|-|||
T Consensus 26 ~AF~~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 26 QAFRLVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 35677788899999888899999888733 4455887
No 245
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.08 E-value=1.1e+02 Score=22.68 Aligned_cols=46 Identities=17% Similarity=0.138 Sum_probs=32.6
Q ss_pred CCcHHHHHHhhcc-cC-ceeEEEEeec-CCCceEEEEeCCHHHHHHHHH
Q 020065 7 LLKVIFILQVFSA-FG-FVHKITTFEK-TAGFQALVQFSDTETASSAKN 52 (331)
Q Consensus 7 ~vtee~L~~lF~~-fG-~V~~i~~~~~-~~~~~aFV~f~~~e~A~~Av~ 52 (331)
+.|..+|++.++. || +|.+|..+.. ...--|+|.+..-++|...-.
T Consensus 31 ~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 31 RATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 6778888888885 55 4777766652 221249999999988887644
No 246
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.23 E-value=1.5e+02 Score=22.04 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=35.0
Q ss_pred HHHHHHhhccc-CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC
Q 020065 10 VIFILQVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56 (331)
Q Consensus 10 ee~L~~lF~~f-G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng 56 (331)
.+.++++++.+ |+|.++-...+.--....+++.|.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 35577888877 578888766655445688999999999988766654
No 247
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=34.68 E-value=2.4e+02 Score=22.56 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred HHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccC
Q 020065 147 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 193 (331)
Q Consensus 147 ~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~ 193 (331)
++|..+-.+.+..| ..+ .|..-|.+-+.|-.|+..|-|+.+..
T Consensus 98 qlfn~~~dlq~fii-~dd---raifm~kdge~a~e~k~fll~qd~~a 140 (164)
T KOG4357|consen 98 QLFNAHVDLQRFII-DDD---RAIFMFKDGEQAFEAKDFLLGQDFCA 140 (164)
T ss_pred HhhccccceEEEEe-cCC---eEEEEEeChhHHHHHHHHhhccchhe
Confidence 35555555555433 333 38888999999999999998887644
No 248
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=32.92 E-value=1.7e+02 Score=21.71 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=35.9
Q ss_pred cCCCCCCHHHHHHHHcc-CC-CeeEEEEEccCCC-eeEEEEcCCHHHHHHHHHHh
Q 020065 135 NMQYAVTLDVLHMVFSA-FG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEAL 186 (331)
Q Consensus 135 nl~~~vt~~~L~~~Fs~-fG-~V~~v~i~~~~~g-~~afV~f~~~~~A~~Ai~~l 186 (331)
..+...+..++++.++. || .|.+|..+...++ --|||.+..-+.|...-..+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 34557888888888876 55 5777765543322 14999999988888765443
No 249
>PRK11901 hypothetical protein; Reviewed
Probab=31.89 E-value=84 Score=29.43 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=32.9
Q ss_pred CCHHHHHHHHccCCCeeEEEEEccC-CCeeEEE----EcCCHHHHHHHHHHhcC
Q 020065 140 VTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALI----QYPDVQTAVVAKEALEG 188 (331)
Q Consensus 140 vt~~~L~~~Fs~fG~V~~v~i~~~~-~g~~afV----~f~~~~~A~~Ai~~lng 188 (331)
-+++.|..+-..++ +..+.+++.. +|---|| .|.++++|..|+..|=.
T Consensus 254 s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 254 SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 36788888777776 4556665433 2312333 89999999999998853
No 250
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.64 E-value=83 Score=26.88 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=33.4
Q ss_pred CcHHHHHHhhc-ccCceeEEEEee---c--CCCceEEEEeCCHHHHHHHHHHhC
Q 020065 8 LKVIFILQVFS-AFGFVHKITTFE---K--TAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 8 vtee~L~~lF~-~fG~V~~i~~~~---~--~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
+|++.|.++-. .-|.+.+|.+.+ + ..+|--||+|.+.+.|.+.++.-.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 56665555533 117999988776 2 334569999999999999777533
No 251
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=29.05 E-value=1.9e+02 Score=28.99 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=6.4
Q ss_pred eEEEEcCCH
Q 020065 168 QALIQYPDV 176 (331)
Q Consensus 168 ~afV~f~~~ 176 (331)
.|.+.+.+.
T Consensus 443 ~ap~~~s~~ 451 (694)
T KOG4264|consen 443 RAPSHQSDR 451 (694)
T ss_pred ccccccccc
Confidence 577877774
No 252
>PF15063 TC1: Thyroid cancer protein 1
Probab=27.37 E-value=34 Score=24.69 Aligned_cols=49 Identities=22% Similarity=0.152 Sum_probs=32.7
Q ss_pred eccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHh
Q 020065 133 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 186 (331)
Q Consensus 133 v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~l 186 (331)
+.|+..+|+.+.|..||.+-|+-.-- ..-+ .-|-...|.++-++|+..|
T Consensus 30 saNIFe~vn~~qlqrLF~~sGD~kAE---eRA~--iI~~~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 30 SANIFENVNLDQLQRLFQKSGDKKAE---ERAR--IIWECAQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhccCHHHHHHHHHHccchhHH---HHHH--HHHhhCCCHHHHHHHHHhc
Confidence 67888999999999999999964210 0001 1233445677777777665
No 253
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.89 E-value=1.1e+02 Score=29.59 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=42.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCe-eEEEEEccCCCeeEEEEcCCHHHHHHHHHH
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V-~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ 185 (331)
-.||- |.|.+...--++|..+|+.|++- -+|+-+.+. .||-.|.+...|+.|+..
T Consensus 391 pHVlE--Iydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLE--IYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeE--eccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 35666 66888877778888899999853 455555554 499999999999999864
No 254
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=26.32 E-value=2.1e+02 Score=20.76 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=31.9
Q ss_pred CCcHHHHHHhhcc-cC-ceeEEEEeec-CCCceEEEEeCCHHHHHHHHH
Q 020065 7 LLKVIFILQVFSA-FG-FVHKITTFEK-TAGFQALVQFSDTETASSAKN 52 (331)
Q Consensus 7 ~vtee~L~~lF~~-fG-~V~~i~~~~~-~~~~~aFV~f~~~e~A~~Av~ 52 (331)
+.|..+|++.++. || +|.+|..+.. ...--|||++..-++|...-.
T Consensus 24 ~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 24 KATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 6788889988885 55 4777766552 221249999998888876543
No 255
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=25.05 E-value=95 Score=23.51 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=31.9
Q ss_pred CCCCCcHHHHHHhhccc--------CceeEEEEee---------c-CCCceEEEEeCCHHHHHHHHHH
Q 020065 4 TLSLLKVIFILQVFSAF--------GFVHKITTFE---------K-TAGFQALVQFSDTETASSAKNA 53 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~f--------G~V~~i~~~~---------~-~~~~~aFV~f~~~e~A~~Av~~ 53 (331)
-..+++++++..+.+.+ |+|.++.-.- | ..+.|-++.|.-..++.+.++.
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 34567777776665554 5666654321 2 3455688999887777777764
No 256
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=24.34 E-value=5.1e+02 Score=25.71 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=5.3
Q ss_pred CCCCCCCCCC
Q 020065 290 HPYMPPGSMP 299 (331)
Q Consensus 290 ~~~~pp~~~p 299 (331)
.++.|++.|+
T Consensus 583 ~~~vP~~~M~ 592 (654)
T COG5180 583 SPHVPAGFMA 592 (654)
T ss_pred CCCCCccccc
Confidence 3445555555
No 257
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=23.67 E-value=1.8e+02 Score=26.51 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=37.2
Q ss_pred CCcHHH--HHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC
Q 020065 7 LLKVIF--ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 7 ~vtee~--L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
.++||- |++.|+++|. -.+....+..||--||-+.+.++|...++.|-
T Consensus 37 ~ised~~i~~~~~~~~~~-g~~~t~~ga~ggv~~~p~~~~~~~~~~~~~l~ 86 (268)
T TIGR01743 37 SISEDIVIIKETFEKFGI-GKLLTVPGAAGGVKYIPKMSQAEAEEFVEELC 86 (268)
T ss_pred hhhhhHHHHHHHHHhcCC-ceEEEeCCCCCCeEEEeCCCHHHHHHHHHHHH
Confidence 455554 8999998853 44556678888999999999999999888654
No 258
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=23.31 E-value=61 Score=25.54 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=22.6
Q ss_pred CcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHH
Q 020065 8 LKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASS 49 (331)
Q Consensus 8 vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~ 49 (331)
++.++|++.|+.|..+.-..+.. ....+++.|+|...-.--+
T Consensus 29 ~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~ 71 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFK 71 (116)
T ss_dssp --SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHH
T ss_pred cCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHH
Confidence 46688999999998875333332 2223579999998765443
No 259
>PRK11901 hypothetical protein; Reviewed
Probab=23.14 E-value=1e+02 Score=28.83 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=31.0
Q ss_pred cHHHHHHhhcccCceeEEEEeecC---CCceEEE--EeCCHHHHHHHHHHhCC
Q 020065 9 KVIFILQVFSAFGFVHKITTFEKT---AGFQALV--QFSDTETASSAKNALDG 56 (331)
Q Consensus 9 tee~L~~lF~~fG~V~~i~~~~~~---~~~~aFV--~f~~~e~A~~Av~~lng 56 (331)
+++.|..+-++.+ +.++.+++.. .-.|.+| .|.+.++|..|++.|--
T Consensus 255 ~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 255 RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4666777766675 4666666522 2234443 59999999999997653
No 260
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=22.74 E-value=89 Score=28.93 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=25.1
Q ss_pred EEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 169 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 169 afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
|||.|++.++|..|++.+....- + .++++.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~---~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--N---SWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--C---CceEeeCC
Confidence 79999999999999998765543 3 56777663
No 261
>PRK09213 pur operon repressor; Provisional
Probab=22.34 E-value=1.9e+02 Score=26.46 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=37.2
Q ss_pred CCcHHH--HHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC
Q 020065 7 LLKVIF--ILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 7 ~vtee~--L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
.++||- |++.|+++|. -.+....+..||--||-+.+.|+|...++.|-
T Consensus 39 ~ised~~i~~~~~~~~~~-g~~~t~~ga~ggv~~~p~~~~~~a~~~~~~L~ 88 (271)
T PRK09213 39 SISEDLVIIKETFEKQGI-GTLETVPGAAGGVKYIPSISEEEAREFVEELC 88 (271)
T ss_pred hhhhhHHHHHHHHHhcCC-ceEEEeCCCCCCeEEEcCCCHHHHHHHHHHHH
Confidence 455554 8999998853 44556678888999999999999999888654
No 262
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=22.31 E-value=2.3e+02 Score=18.28 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=28.4
Q ss_pred CCHHHHHHHHccCC-CeeEEEEEccCCC-eeEEEEcCCHHHHHHHH
Q 020065 140 VTLDVLHMVFSAFG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAK 183 (331)
Q Consensus 140 vt~~~L~~~Fs~fG-~V~~v~i~~~~~g-~~afV~f~~~~~A~~Ai 183 (331)
=...++.+++...| +|..+.+.....+ ....+.+++.+.|.+++
T Consensus 10 G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 10 GRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred ChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 34456667777766 6877776664422 12457888888887765
No 263
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.09 E-value=2.6e+02 Score=18.86 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=28.5
Q ss_pred CCHHHHHHHHccCC-CeeEEEEEccCCCeeEEEEcCCHHHHHHHHHH
Q 020065 140 VTLDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185 (331)
Q Consensus 140 vt~~~L~~~Fs~fG-~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ 185 (331)
=...++-++|.+.| +|..+.++.......--+.+++.+.|.++++.
T Consensus 13 G~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 13 GRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred ChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 35677778887777 68888776544321133456666666666654
No 264
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=21.75 E-value=1.2e+02 Score=21.33 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.5
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 36 QALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 36 ~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
+.+|.|.+..+|.+|-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 689999999999999999997655
No 265
>PRK02302 hypothetical protein; Provisional
Probab=21.46 E-value=3.6e+02 Score=20.24 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccccccccc
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQ 88 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~ 88 (331)
.++++| .+||.|.-+. ++.+ | .|-|-+.++|+..++.|....+ --+|..|...++...+.
T Consensus 18 k~~r~L-rkfG~I~Y~S---kk~k-Y-vvlYvn~~~~e~~~~kl~~l~f------------Vk~Ve~S~~~~l~~~f~ 77 (89)
T PRK02302 18 RDARKL-SKYGDIVYHS---KRSR-Y-LVLYVNKEDVEQKLEELSKLKF------------VKKVRPSAIDEIDQNFV 77 (89)
T ss_pred HhHHHH-hhcCcEEEEe---cccc-E-EEEEECHHHHHHHHHHHhcCCC------------eeEEcccCchhccchhh
Confidence 455665 7999887652 2222 3 4668899999999999997665 13566666777766544
No 266
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=21.33 E-value=1.6e+02 Score=29.43 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=34.1
Q ss_pred HHHHHHhhc----ccCceeEEEEe--ec-CCCceEEEEeCCHHHHHHHHHHhCCC
Q 020065 10 VIFILQVFS----AFGFVHKITTF--EK-TAGFQALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 10 ee~L~~lF~----~fG~V~~i~~~--~~-~~~~~aFV~f~~~e~A~~Av~~lng~ 57 (331)
.-+|..+|. .+|-|+++.+. +. ......++.|.+.++|..|+..+...
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~ 257 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAA 257 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhc
Confidence 346777777 78889887553 21 12235789999999999999887543
No 267
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=20.83 E-value=2.4e+02 Score=23.15 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=25.7
Q ss_pred eeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC
Q 020065 23 VHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56 (331)
Q Consensus 23 V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng 56 (331)
|.+|.+... -.||-||++...+++..+++.+.+
T Consensus 36 i~~i~vp~~-fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-CCcEEEEEEEChHHHHHHHhcCCC
Confidence 666666554 457999999988999999977765
No 268
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=20.64 E-value=1.5e+02 Score=23.65 Aligned_cols=33 Identities=24% Similarity=0.104 Sum_probs=25.5
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng 56 (331)
+.+++++|||.-+.++.|- +.|+|.+|+++-+|
T Consensus 79 d~~~i~eeDIkLV~eQa~V--------------------sreeA~kAL~e~~G 111 (122)
T COG1308 79 DESDISEEDIKLVMEQAGV--------------------SREEAIKALEEAGG 111 (122)
T ss_pred ccCCCCHHHHHHHHHHhCC--------------------CHHHHHHHHHHcCC
Confidence 3467888888888777662 47899999998776
No 269
>PRK10905 cell division protein DamX; Validated
Probab=20.52 E-value=2.2e+02 Score=26.62 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=31.6
Q ss_pred CCHHHHHHHHccCCCeeEEEEEcc-CCCeeEEE----EcCCHHHHHHHHHHhc
Q 020065 140 VTLDVLHMVFSAFGPVQKIAMFDK-NGGLQALI----QYPDVQTAVVAKEALE 187 (331)
Q Consensus 140 vt~~~L~~~Fs~fG~V~~v~i~~~-~~g~~afV----~f~~~~~A~~Ai~~ln 187 (331)
-+++.|+++-.++| +....++.+ ++|---|| .|.++++|.+|++.|=
T Consensus 256 Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 256 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 37788888888886 444444432 23322343 7999999999999885
Done!