Query 020065
Match_columns 331
No_of_seqs 263 out of 1569
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2.5E-30 8.5E-35 227.0 14.3 154 3-208 22-182 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 1.3E-29 4.3E-34 221.4 16.5 181 3-204 11-204 (205)
3 1fxl_A Paraneoplastic encephal 100.0 4.2E-29 1.4E-33 209.2 16.9 151 2-204 8-167 (167)
4 3pgw_A U1-A; protein-RNA compl 100.0 8.9E-29 3E-33 225.7 20.3 189 3-206 16-282 (282)
5 3md3_A Nuclear and cytoplasmic 100.0 6.6E-29 2.3E-33 207.8 17.3 152 3-206 7-166 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.7E-29 1.6E-33 209.5 16.1 150 3-204 10-168 (168)
7 2adc_A Polypyrimidine tract-bi 100.0 1.8E-28 6E-33 217.6 19.9 180 3-206 41-227 (229)
8 2qfj_A FBP-interacting repress 100.0 5.9E-29 2E-33 217.5 16.0 164 2-208 34-206 (216)
9 1qm9_A Polypyrimidine tract-bi 100.0 2.3E-28 7.9E-33 211.4 18.2 181 3-207 10-197 (198)
10 3nmr_A Cugbp ELAV-like family 100.0 2.2E-28 7.5E-33 206.6 15.8 156 3-205 10-175 (175)
11 1l3k_A Heterogeneous nuclear r 100.0 1.6E-27 5.4E-32 205.3 15.2 158 2-209 19-185 (196)
12 3zzy_A Polypyrimidine tract-bi 99.9 1E-27 3.5E-32 192.9 12.7 109 121-230 21-129 (130)
13 2g4b_A Splicing factor U2AF 65 99.9 2.4E-27 8.3E-32 199.9 15.0 145 3-204 11-171 (172)
14 2yh0_A Splicing factor U2AF 65 99.9 5.6E-27 1.9E-31 202.2 16.7 169 3-208 11-195 (198)
15 2cjk_A Nuclear polyadenylated 99.9 1.6E-27 5.5E-32 200.0 11.9 149 2-207 9-166 (167)
16 1fje_B Nucleolin RBD12, protei 99.9 8.6E-28 3E-32 203.5 10.2 153 2-207 19-174 (175)
17 3smz_A Protein raver-1, ribonu 99.9 1.1E-26 3.6E-31 212.2 16.7 156 3-209 102-266 (284)
18 3sde_A Paraspeckle component 1 99.9 5.1E-26 1.7E-30 205.7 14.4 146 3-207 29-179 (261)
19 2ghp_A U4/U6 snRNA-associated 99.9 5E-26 1.7E-30 208.5 14.2 157 3-207 124-291 (292)
20 3smz_A Protein raver-1, ribonu 99.9 4.7E-25 1.6E-29 201.2 17.4 143 3-208 29-176 (284)
21 2e5i_A Heterogeneous nuclear r 99.9 2.9E-25 9.9E-30 177.7 13.4 102 124-227 21-122 (124)
22 2ghp_A U4/U6 snRNA-associated 99.9 8.9E-25 3.1E-29 200.1 15.8 144 3-208 48-198 (292)
23 1sjr_A Polypyrimidine tract-bi 99.9 7.4E-25 2.5E-29 182.6 12.0 112 123-235 41-152 (164)
24 2i2y_A Fusion protein consists 99.9 1.4E-21 4.9E-26 161.8 12.4 138 31-207 10-148 (150)
25 3zzy_A Polypyrimidine tract-bi 99.9 2.1E-21 7.1E-26 156.0 10.7 95 3-104 35-129 (130)
26 2kn4_A Immunoglobulin G-bindin 99.8 2.5E-20 8.5E-25 155.4 14.5 140 28-208 7-151 (158)
27 1sjr_A Polypyrimidine tract-bi 99.8 5.8E-20 2E-24 153.0 10.3 95 3-104 53-147 (164)
28 2e5i_A Heterogeneous nuclear r 99.8 2.4E-19 8.1E-24 143.3 11.2 91 3-101 32-122 (124)
29 4f25_A Polyadenylate-binding p 99.7 1.6E-18 5.5E-23 137.0 7.5 70 3-81 12-83 (115)
30 3r27_A HnRNP L, heterogeneous 99.7 6.7E-18 2.3E-22 129.4 10.4 79 124-209 19-99 (100)
31 3r27_A HnRNP L, heterogeneous 99.7 4.7E-18 1.6E-22 130.3 8.0 74 1-83 26-99 (100)
32 4fxv_A ELAV-like protein 1; RN 99.7 2E-17 6.9E-22 127.2 9.1 75 126-206 19-98 (99)
33 1sjq_A Polypyrimidine tract-bi 99.7 2.3E-17 7.8E-22 127.7 8.6 81 124-211 14-96 (105)
34 1wex_A Hypothetical protein (r 99.7 6.4E-17 2.2E-21 125.5 10.9 80 124-210 13-94 (104)
35 2lea_A Serine/arginine-rich sp 99.7 1.8E-17 6E-22 134.8 6.9 119 35-208 5-128 (135)
36 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 126.5 11.5 80 124-210 29-110 (119)
37 4f25_A Polyadenylate-binding p 99.7 6.1E-17 2.1E-21 127.8 9.1 79 126-210 5-86 (115)
38 2wbr_A GW182, gawky, LD47780P; 99.7 5.9E-17 2E-21 120.3 7.8 74 126-206 7-80 (89)
39 2cq1_A PTB-like protein L; RRM 99.7 2.7E-16 9.3E-21 121.2 11.3 80 124-210 13-94 (101)
40 3s8s_A Histone-lysine N-methyl 99.7 3E-16 1E-20 122.9 10.2 81 124-210 4-89 (110)
41 1sjq_A Polypyrimidine tract-bi 99.7 9.4E-17 3.2E-21 124.2 6.6 74 2-86 22-97 (105)
42 1x4d_A Matrin 3; structural ge 99.7 1.7E-16 5.8E-21 122.4 8.1 76 125-207 14-92 (102)
43 2wbr_A GW182, gawky, LD47780P; 99.7 1.2E-16 4.1E-21 118.6 6.8 69 3-82 14-82 (89)
44 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.3E-16 7.8E-21 132.5 9.5 139 39-209 11-154 (165)
45 2dgu_A Heterogeneous nuclear r 99.7 8.9E-16 3.1E-20 118.5 11.7 77 125-210 10-86 (103)
46 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.1E-16 1.1E-20 116.5 8.7 75 125-205 6-85 (85)
47 4fxv_A ELAV-like protein 1; RN 99.7 1.9E-16 6.5E-21 121.7 7.5 69 3-80 26-98 (99)
48 1why_A Hypothetical protein ri 99.7 6.2E-16 2.1E-20 118.0 10.3 77 125-208 16-94 (97)
49 1x4c_A Splicing factor, argini 99.6 1.3E-15 4.3E-20 118.8 11.8 75 126-208 15-94 (108)
50 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.2E-15 4.2E-20 117.6 11.6 79 125-209 14-95 (103)
51 3lqv_A PRE-mRNA branch site pr 99.6 1.4E-16 4.6E-21 125.6 6.2 95 2-154 14-109 (115)
52 2dnq_A RNA-binding protein 4B; 99.6 1.1E-15 3.7E-20 115.0 10.7 75 125-208 7-81 (90)
53 2x1f_A MRNA 3'-END-processing 99.6 6.3E-16 2.1E-20 117.8 9.4 79 126-210 2-85 (96)
54 1whw_A Hypothetical protein ri 99.6 1.2E-15 4.1E-20 116.8 11.1 79 125-209 7-90 (99)
55 2cq3_A RNA-binding protein 9; 99.6 2.1E-15 7.2E-20 116.3 12.5 79 125-209 14-95 (103)
56 1wex_A Hypothetical protein (r 99.6 4.2E-16 1.4E-20 120.8 8.4 74 2-84 21-94 (104)
57 1x4f_A Matrin 3; structural ge 99.6 3.5E-16 1.2E-20 122.5 7.9 78 124-208 23-103 (112)
58 3bs9_A Nucleolysin TIA-1 isofo 99.6 6E-16 2.1E-20 115.4 8.9 76 126-207 6-86 (87)
59 2ad9_A Polypyrimidine tract-bi 99.6 4.1E-16 1.4E-20 123.5 8.2 74 2-86 37-112 (119)
60 2hvz_A Splicing factor, argini 99.6 9.4E-16 3.2E-20 117.9 10.1 75 128-208 2-76 (101)
61 2cqb_A Peptidyl-prolyl CIS-tra 99.6 7.3E-16 2.5E-20 118.6 9.3 80 124-209 10-94 (102)
62 1x5s_A Cold-inducible RNA-bind 99.6 1.3E-15 4.3E-20 117.3 10.5 80 124-209 10-94 (102)
63 2dnh_A Bruno-like 5, RNA bindi 99.6 1.6E-15 5.5E-20 117.3 11.1 83 124-209 13-99 (105)
64 2cpj_A Non-POU domain-containi 99.6 1.5E-15 5E-20 116.4 10.7 78 124-208 13-90 (99)
65 2diu_A KIAA0430 protein; struc 99.6 1.6E-15 5.5E-20 113.6 10.4 77 125-211 7-88 (96)
66 2e5h_A Zinc finger CCHC-type a 99.6 1.5E-15 5E-20 115.1 10.5 76 124-205 14-94 (94)
67 1x4d_A Matrin 3; structural ge 99.6 3.1E-16 1.1E-20 120.9 6.7 73 2-83 21-95 (102)
68 2dnz_A Probable RNA-binding pr 99.6 1.8E-15 6.1E-20 114.8 10.8 78 125-208 4-86 (95)
69 2lxi_A RNA-binding protein 10; 99.6 1.7E-16 5.7E-21 120.1 4.9 77 126-208 1-84 (91)
70 2a3j_A U1 small nuclear ribonu 99.6 6.2E-16 2.1E-20 124.2 8.4 81 125-211 28-114 (127)
71 2cq1_A PTB-like protein L; RRM 99.6 8.7E-16 3E-20 118.3 8.9 73 2-85 21-95 (101)
72 3tyt_A Heterogeneous nuclear r 99.6 9.5E-16 3.3E-20 133.3 10.2 79 125-209 3-82 (205)
73 2dgs_A DAZ-associated protein 99.6 3.5E-15 1.2E-19 114.2 12.0 78 125-209 9-91 (99)
74 2cph_A RNA binding motif prote 99.6 2.3E-15 7.8E-20 116.8 11.1 78 125-208 14-98 (107)
75 3md1_A Nuclear and cytoplasmic 99.6 1.3E-15 4.5E-20 112.6 9.3 75 128-208 3-82 (83)
76 2dgo_A Cytotoxic granule-assoc 99.6 3.2E-15 1.1E-19 117.6 12.1 79 125-209 14-97 (115)
77 2dgx_A KIAA0430 protein; RRM d 99.6 1.3E-15 4.4E-20 116.2 9.4 77 126-208 9-91 (96)
78 2fy1_A RNA-binding motif prote 99.6 3.8E-15 1.3E-19 117.7 12.4 78 126-209 7-88 (116)
79 2lkz_A RNA-binding protein 5; 99.6 9.2E-16 3.2E-20 116.9 8.3 75 126-206 9-94 (95)
80 2err_A Ataxin-2-binding protei 99.6 1.6E-15 5.4E-20 118.5 9.9 78 125-208 28-108 (109)
81 1x4a_A Splicing factor, argini 99.6 2.9E-15 9.8E-20 116.8 11.2 78 125-208 21-100 (109)
82 2do4_A Squamous cell carcinoma 99.6 2.1E-15 7.3E-20 115.6 10.2 78 125-208 16-97 (100)
83 2jvo_A Nucleolar protein 3; nu 99.6 1.7E-15 5.9E-20 118.1 9.8 76 124-208 29-104 (108)
84 2ytc_A PRE-mRNA-splicing facto 99.6 1.4E-15 4.8E-20 113.0 8.8 74 125-205 11-85 (85)
85 1x5t_A Splicing factor 3B subu 99.6 1.3E-15 4.6E-20 115.8 8.8 78 125-208 4-87 (96)
86 2d9p_A Polyadenylate-binding p 99.6 2E-15 6.9E-20 116.4 9.8 79 125-209 14-95 (103)
87 2xnq_A Nuclear polyadenylated 99.6 2.7E-15 9.1E-20 114.7 10.3 75 124-207 20-95 (97)
88 3s8s_A Histone-lysine N-methyl 99.6 8.4E-16 2.9E-20 120.4 7.5 72 2-82 12-87 (110)
89 2dgv_A HnRNP M, heterogeneous 99.6 1.7E-15 5.8E-20 114.2 9.0 78 125-208 7-87 (92)
90 2cqc_A Arginine/serine-rich sp 99.6 1.5E-15 5.2E-20 115.2 8.7 76 125-206 14-94 (95)
91 1x5u_A Splicing factor 3B subu 99.6 3.7E-15 1.3E-19 115.3 11.1 79 125-209 14-97 (105)
92 2cpz_A CUG triplet repeat RNA- 99.6 2.6E-15 8.9E-20 118.2 10.3 79 124-208 23-106 (115)
93 2cpf_A RNA binding motif prote 99.6 1.5E-15 5.1E-20 116.0 8.6 78 125-208 4-89 (98)
94 2la4_A Nuclear and cytoplasmic 99.6 1.2E-15 4.2E-20 117.2 8.2 75 125-206 26-100 (101)
95 4a8x_A RNA-binding protein wit 99.6 2E-15 6.9E-20 112.7 8.9 76 126-207 4-85 (88)
96 2dgt_A RNA-binding protein 30; 99.6 3.6E-15 1.2E-19 112.6 10.4 75 125-208 9-83 (92)
97 2cq0_A Eukaryotic translation 99.6 2E-15 7E-20 116.4 9.1 78 125-208 14-96 (103)
98 2khc_A Testis-specific RNP-typ 99.6 1.9E-15 6.5E-20 119.5 9.0 76 124-205 38-118 (118)
99 1whx_A Hypothetical protein ri 99.6 1.9E-15 6.6E-20 118.5 8.7 77 126-209 10-86 (111)
100 2ywk_A Putative RNA-binding pr 99.6 1.8E-15 6.3E-20 114.8 8.2 76 125-206 15-94 (95)
101 2dnm_A SRP46 splicing factor; 99.6 3.1E-15 1.1E-19 115.4 9.5 78 125-208 12-94 (103)
102 1x4g_A Nucleolysin TIAR; struc 99.6 3.7E-15 1.3E-19 116.2 10.1 77 125-208 24-100 (109)
103 2kvi_A Nuclear polyadenylated 99.6 3.1E-15 1.1E-19 114.0 9.4 75 125-208 9-84 (96)
104 2do0_A HnRNP M, heterogeneous 99.6 7.7E-15 2.6E-19 115.2 11.8 79 124-208 13-95 (114)
105 2cpi_A CCR4-NOT transcription 99.6 1.2E-15 4.1E-20 119.5 7.0 77 126-208 15-102 (111)
106 2la6_A RNA-binding protein FUS 99.6 3.9E-15 1.3E-19 114.0 9.7 75 125-205 12-99 (99)
107 1nu4_A U1A RNA binding domain; 99.6 1.7E-15 5.7E-20 115.5 7.6 81 124-210 6-92 (97)
108 2dnp_A RNA-binding protein 14; 99.6 4.9E-15 1.7E-19 111.4 9.9 75 125-208 8-82 (90)
109 1x4h_A RNA-binding protein 28; 99.6 7.2E-15 2.5E-19 114.7 11.2 79 125-209 14-103 (111)
110 2dgp_A Bruno-like 4, RNA bindi 99.6 3.9E-15 1.4E-19 115.3 9.6 78 125-208 12-97 (106)
111 3pgw_S U1-70K; protein-RNA com 99.6 4.6E-16 1.6E-20 150.1 5.2 78 125-208 101-183 (437)
112 2cq2_A Hypothetical protein LO 99.6 2E-15 7E-20 118.4 7.9 81 125-208 24-107 (114)
113 1p27_B RNA-binding protein 8A; 99.6 3.8E-15 1.3E-19 115.4 9.4 78 125-208 22-104 (106)
114 2jvr_A Nucleolar protein 3; RN 99.6 2.1E-15 7E-20 118.2 7.8 76 126-207 28-105 (111)
115 1x4f_A Matrin 3; structural ge 99.6 8.4E-16 2.9E-20 120.4 5.5 71 2-81 31-102 (112)
116 3ex7_B RNA-binding protein 8A; 99.6 4E-15 1.4E-19 119.0 9.6 78 125-208 21-103 (126)
117 2jrs_A RNA-binding protein 39; 99.6 5.3E-15 1.8E-19 115.4 10.0 77 125-207 25-106 (108)
118 1oo0_B CG8781-PA, drosophila Y 99.6 4.1E-15 1.4E-19 116.1 9.4 78 125-208 25-107 (110)
119 2hvz_A Splicing factor, argini 99.6 2E-15 6.7E-20 116.0 7.1 71 2-82 6-76 (101)
120 2div_A TRNA selenocysteine ass 99.6 3.2E-15 1.1E-19 114.4 8.2 78 125-208 8-95 (99)
121 2kxn_B Transformer-2 protein h 99.6 4.1E-15 1.4E-19 119.8 9.2 79 124-208 44-127 (129)
122 1u6f_A Tcubp1, RNA-binding pro 99.6 1.3E-14 4.3E-19 118.1 12.0 78 125-208 41-123 (139)
123 2lkz_A RNA-binding protein 5; 99.6 1.8E-15 6.1E-20 115.3 6.3 73 3-80 16-94 (95)
124 2e5j_A Methenyltetrahydrofolat 99.6 8.1E-15 2.8E-19 111.8 10.0 77 125-208 18-95 (97)
125 2kt5_A RNA and export factor-b 99.6 1.4E-14 4.8E-19 115.6 11.6 78 125-208 34-115 (124)
126 3ulh_A THO complex subunit 4; 99.6 6.9E-15 2.4E-19 114.1 9.4 75 125-205 28-106 (107)
127 3p5t_L Cleavage and polyadenyl 99.6 1.4E-15 4.6E-20 114.6 5.2 74 131-208 4-84 (90)
128 3ns6_A Eukaryotic translation 99.6 2E-15 6.7E-20 116.1 6.1 76 126-207 6-93 (100)
129 2cqd_A RNA-binding region cont 99.6 1.5E-14 5.3E-19 113.9 11.2 78 124-208 15-97 (116)
130 3bs9_A Nucleolysin TIA-1 isofo 99.6 4.5E-15 1.5E-19 110.6 7.6 71 2-81 12-86 (87)
131 2cpd_A Apobec-1 stimulating pr 99.6 1.5E-14 5.2E-19 110.7 10.6 75 125-208 14-90 (99)
132 1p1t_A Cleavage stimulation fa 99.6 4.6E-15 1.6E-19 114.5 7.7 79 126-210 8-91 (104)
133 1wf1_A RNA-binding protein RAL 99.6 1E-14 3.5E-19 113.9 9.7 75 125-208 26-101 (110)
134 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-14 4.6E-19 114.1 10.4 78 125-208 7-86 (115)
135 2dhg_A TRNA selenocysteine ass 99.6 5E-15 1.7E-19 114.3 7.7 79 125-209 8-92 (104)
136 2dnz_A Probable RNA-binding pr 99.6 8.7E-15 3E-19 111.0 8.8 71 2-81 11-85 (95)
137 3md1_A Nuclear and cytoplasmic 99.6 6.3E-15 2.2E-19 108.8 7.8 70 3-81 8-81 (83)
138 2e44_A Insulin-like growth fac 99.6 9.2E-15 3.2E-19 111.1 8.9 78 126-208 15-93 (96)
139 2cqh_A IGF-II mRNA-binding pro 99.6 5.6E-15 1.9E-19 111.7 7.6 76 125-208 7-84 (93)
140 1wg1_A KIAA1579 protein, homol 99.6 1.1E-14 3.8E-19 109.1 9.1 77 126-210 5-81 (88)
141 2cpe_A RNA-binding protein EWS 99.6 1.2E-14 3.9E-19 114.1 9.6 78 125-208 14-104 (113)
142 2lxi_A RNA-binding protein 10; 99.6 1.2E-15 4.2E-20 115.3 3.7 70 3-81 8-83 (91)
143 3ucg_A Polyadenylate-binding p 99.6 8.3E-15 2.9E-19 109.6 8.2 75 126-207 6-85 (89)
144 2jvr_A Nucleolar protein 3; RN 99.6 2.8E-15 9.7E-20 117.4 5.8 71 2-81 34-105 (111)
145 2e5h_A Zinc finger CCHC-type a 99.6 7.1E-15 2.4E-19 111.3 7.8 69 2-79 22-94 (94)
146 1x4a_A Splicing factor, argini 99.6 7.3E-15 2.5E-19 114.5 8.1 71 2-81 28-99 (109)
147 1x5p_A Negative elongation fac 99.6 3E-14 1E-18 108.6 11.1 76 125-209 14-89 (97)
148 1wi8_A EIF-4B, eukaryotic tran 99.6 1.4E-14 4.7E-19 111.9 9.2 76 125-208 14-95 (104)
149 2m2b_A RNA-binding protein 10; 99.5 1.1E-14 3.6E-19 117.6 8.6 78 124-208 21-109 (131)
150 3mdf_A Peptidyl-prolyl CIS-tra 99.5 6.4E-15 2.2E-19 109.3 6.7 68 3-79 14-85 (85)
151 2dis_A Unnamed protein product 99.5 1.6E-14 5.5E-19 112.4 9.3 78 125-208 7-93 (109)
152 1x5s_A Cold-inducible RNA-bind 99.5 8.8E-15 3E-19 112.5 7.4 72 2-82 18-93 (102)
153 2x1f_A MRNA 3'-END-processing 99.5 9.5E-15 3.3E-19 111.2 7.5 73 2-83 8-84 (96)
154 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.3E-14 8E-19 118.9 10.4 78 125-208 38-120 (156)
155 1x4e_A RNA binding motif, sing 99.5 2.9E-15 1E-19 111.3 4.4 74 125-204 4-82 (85)
156 2err_A Ataxin-2-binding protei 99.5 7.4E-15 2.5E-19 114.7 6.9 72 2-82 35-108 (109)
157 2cq4_A RNA binding motif prote 99.5 1.4E-14 4.6E-19 113.9 8.4 76 126-208 25-105 (114)
158 2j76_E EIF-4B, EIF4B, eukaryot 99.5 5.2E-15 1.8E-19 113.7 5.8 75 125-207 18-98 (100)
159 2dng_A Eukaryotic translation 99.5 2.1E-14 7E-19 110.7 9.2 76 125-208 14-94 (103)
160 2cpj_A Non-POU domain-containi 99.5 1.1E-14 3.7E-19 111.5 7.6 70 2-82 21-90 (99)
161 2cqp_A RNA-binding protein 12; 99.5 6.1E-15 2.1E-19 112.6 6.1 77 125-207 14-95 (98)
162 3p5t_L Cleavage and polyadenyl 99.5 4.5E-15 1.5E-19 111.7 5.3 70 3-81 8-83 (90)
163 2cq3_A RNA-binding protein 9; 99.5 2E-14 7E-19 110.7 9.0 73 2-83 21-95 (103)
164 2d9p_A Polyadenylate-binding p 99.5 1.3E-14 4.5E-19 111.8 7.9 72 2-82 21-94 (103)
165 2ek1_A RNA-binding protein 12; 99.5 4.6E-15 1.6E-19 112.5 5.2 75 125-205 14-93 (95)
166 1why_A Hypothetical protein ri 99.5 1.4E-14 4.8E-19 110.4 8.0 68 3-81 24-93 (97)
167 1whx_A Hypothetical protein ri 99.5 1.1E-14 3.8E-19 114.1 7.5 70 3-83 17-86 (111)
168 2a3j_A U1 small nuclear ribonu 99.5 1E-14 3.5E-19 117.0 7.5 72 2-82 35-111 (127)
169 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 2.5E-14 8.4E-19 116.3 9.8 75 124-204 61-140 (140)
170 2mss_A Protein (musashi1); RNA 99.5 8.2E-15 2.8E-19 106.2 6.2 69 131-204 2-75 (75)
171 1s79_A Lupus LA protein; RRM, 99.5 1.4E-14 4.8E-19 112.0 7.8 74 126-206 11-88 (103)
172 2la6_A RNA-binding protein FUS 99.5 1.2E-14 4.2E-19 111.2 7.5 69 2-79 19-99 (99)
173 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.7E-14 5.9E-19 111.1 8.3 71 3-82 22-94 (103)
174 1whw_A Hypothetical protein ri 99.5 1.3E-14 4.6E-19 110.9 7.7 71 3-82 15-89 (99)
175 1x5o_A RNA binding motif, sing 99.5 2.6E-14 9E-19 112.2 9.5 80 125-207 24-112 (114)
176 2cpz_A CUG triplet repeat RNA- 99.5 1E-14 3.5E-19 114.8 7.1 72 2-82 31-106 (115)
177 2do4_A Squamous cell carcinoma 99.5 1.5E-14 5.2E-19 110.8 7.9 71 2-81 23-96 (100)
178 2cqc_A Arginine/serine-rich sp 99.5 1.2E-14 4.1E-19 110.1 7.2 70 2-80 21-94 (95)
179 2ywk_A Putative RNA-binding pr 99.5 1.1E-14 3.9E-19 110.4 7.1 70 2-80 22-94 (95)
180 2dgs_A DAZ-associated protein 99.5 2.2E-14 7.4E-19 109.7 8.7 71 2-82 16-90 (99)
181 3q2s_C Cleavage and polyadenyl 99.5 2.7E-15 9.3E-20 132.6 4.1 78 126-209 68-152 (229)
182 4a8x_A RNA-binding protein wit 99.5 1.4E-14 4.8E-19 108.1 7.3 71 2-81 10-85 (88)
183 2dgx_A KIAA0430 protein; RRM d 99.5 1.3E-14 4.6E-19 110.5 7.2 71 2-81 15-90 (96)
184 2dgv_A HnRNP M, heterogeneous 99.5 1.4E-14 4.7E-19 109.2 7.2 71 2-81 14-86 (92)
185 2cq0_A Eukaryotic translation 99.5 1.2E-14 4.1E-19 112.0 6.9 72 2-82 21-96 (103)
186 2fy1_A RNA-binding motif prote 99.5 1.8E-14 6.1E-19 113.8 8.0 72 2-82 13-87 (116)
187 2cq2_A Hypothetical protein LO 99.5 8.1E-15 2.8E-19 114.9 5.9 71 4-81 35-106 (114)
188 2fc9_A NCL protein; structure 99.5 3.2E-14 1.1E-18 109.2 9.1 75 125-208 14-92 (101)
189 2dnm_A SRP46 splicing factor; 99.5 1.3E-14 4.3E-19 111.9 6.9 71 2-81 19-93 (103)
190 2e5g_A U6 snRNA-specific termi 99.5 3.6E-14 1.2E-18 107.5 9.3 76 126-208 8-83 (94)
191 2kxn_B Transformer-2 protein h 99.5 2E-14 6.7E-19 115.8 8.2 71 2-81 52-126 (129)
192 3beg_B Splicing factor, argini 99.5 2.4E-14 8.1E-19 112.9 8.5 72 126-205 16-92 (115)
193 3d2w_A TAR DNA-binding protein 99.5 3.3E-14 1.1E-18 106.9 8.8 76 125-208 10-85 (89)
194 2jrs_A RNA-binding protein 39; 99.5 1.7E-14 5.9E-19 112.4 7.5 71 2-81 32-106 (108)
195 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.1E-14 3.7E-19 112.0 6.3 72 2-82 18-93 (102)
196 1fjc_A Nucleolin RBD2, protein 99.5 1.4E-14 4.7E-19 110.1 6.8 78 125-208 15-92 (96)
197 2rs2_A Musashi-1, RNA-binding 99.5 2.9E-14 9.8E-19 111.3 8.6 77 125-208 24-105 (109)
198 2dgo_A Cytotoxic granule-assoc 99.5 3.4E-14 1.2E-18 111.7 9.2 72 2-82 21-96 (115)
199 1p27_B RNA-binding protein 8A; 99.5 2.2E-14 7.4E-19 111.1 7.8 71 2-81 29-103 (106)
200 2khc_A Testis-specific RNP-typ 99.5 1.2E-14 4.1E-19 114.9 6.4 69 2-79 46-118 (118)
201 2la4_A Nuclear and cytoplasmic 99.5 1E-14 3.5E-19 112.0 5.8 68 2-80 33-100 (101)
202 3s7r_A Heterogeneous nuclear r 99.5 4.1E-14 1.4E-18 105.5 9.0 73 125-204 10-87 (87)
203 1x4b_A Heterogeneous nuclear r 99.5 3.4E-14 1.2E-18 111.9 9.0 77 126-209 27-108 (116)
204 3n9u_C Cleavage and polyadenyl 99.5 2.1E-14 7.3E-19 119.4 8.1 78 126-209 55-139 (156)
205 2dnh_A Bruno-like 5, RNA bindi 99.5 2.7E-14 9.2E-19 110.4 8.1 71 3-82 22-98 (105)
206 2jwn_A Embryonic polyadenylate 99.5 2.4E-14 8.1E-19 114.2 7.9 76 126-208 36-116 (124)
207 1x5u_A Splicing factor 3B subu 99.5 1.9E-14 6.5E-19 111.2 7.2 71 3-82 22-96 (105)
208 2e5j_A Methenyltetrahydrofolat 99.5 1.8E-14 6E-19 110.0 6.9 69 3-81 26-94 (97)
209 2dh8_A DAZ-associated protein 99.5 3.7E-14 1.3E-18 109.7 8.8 77 125-208 15-96 (105)
210 2cpf_A RNA binding motif prote 99.5 2.2E-14 7.7E-19 109.4 7.3 71 2-81 11-88 (98)
211 1x5t_A Splicing factor 3B subu 99.5 1.2E-14 4.2E-19 110.4 5.8 72 2-82 11-87 (96)
212 3ns6_A Eukaryotic translation 99.5 1.1E-14 3.8E-19 111.8 5.3 70 3-81 13-93 (100)
213 2pe8_A Splicing factor 45; RRM 99.5 4.8E-14 1.7E-18 109.3 9.0 79 124-208 6-95 (105)
214 3ulh_A THO complex subunit 4; 99.5 2.7E-14 9.1E-19 110.8 7.5 69 2-79 35-106 (107)
215 2ki2_A SS-DNA binding protein 99.5 6E-15 2E-19 110.8 3.7 74 128-208 3-81 (90)
216 2dnq_A RNA-binding protein 4B; 99.5 5.5E-14 1.9E-18 105.6 8.9 67 3-82 15-81 (90)
217 2ytc_A PRE-mRNA-splicing facto 99.5 2E-14 6.9E-19 106.6 6.3 66 3-79 19-85 (85)
218 2nlw_A Eukaryotic translation 99.5 4E-14 1.4E-18 109.7 8.2 76 126-206 15-99 (105)
219 1x4c_A Splicing factor, argini 99.5 4.4E-14 1.5E-18 110.0 8.4 69 2-82 21-94 (108)
220 2cpx_A Hypothetical protein FL 99.5 4.2E-14 1.4E-18 111.1 8.2 79 125-209 24-107 (115)
221 1x5p_A Negative elongation fac 99.5 5.1E-14 1.7E-18 107.4 8.4 66 6-82 23-88 (97)
222 2dgw_A Probable RNA-binding pr 99.5 1E-13 3.5E-18 104.2 10.0 76 125-208 9-88 (91)
223 2cpi_A CCR4-NOT transcription 99.5 2.3E-14 8E-19 112.1 6.6 71 3-82 22-102 (111)
224 2bz2_A Negative elongation fac 99.5 9.9E-14 3.4E-18 110.4 10.1 75 125-208 38-112 (121)
225 2do0_A HnRNP M, heterogeneous 99.5 7.7E-14 2.6E-18 109.4 9.3 71 2-81 21-94 (114)
226 2dgu_A Heterogeneous nuclear r 99.5 5.7E-14 2E-18 108.3 8.3 68 3-83 18-85 (103)
227 1x4g_A Nucleolysin TIAR; struc 99.5 3.9E-14 1.3E-18 110.4 7.4 70 2-82 31-100 (109)
228 2cph_A RNA binding motif prote 99.5 5.1E-14 1.7E-18 109.1 7.9 71 3-82 22-98 (107)
229 1uaw_A Mouse-musashi-1; RNP-ty 99.5 3E-14 1E-18 103.6 6.2 68 132-204 4-76 (77)
230 1p1t_A Cleavage stimulation fa 99.5 2.9E-14 9.9E-19 109.9 6.5 71 3-82 15-89 (104)
231 2dgt_A RNA-binding protein 30; 99.5 4.4E-14 1.5E-18 106.6 7.3 67 2-81 16-82 (92)
232 1oo0_B CG8781-PA, drosophila Y 99.5 4.3E-14 1.5E-18 110.2 7.3 70 3-81 33-106 (110)
233 2mss_A Protein (musashi1); RNA 99.5 2.3E-14 7.9E-19 103.8 5.3 67 2-78 5-75 (75)
234 1x4h_A RNA-binding protein 28; 99.5 4.7E-14 1.6E-18 110.1 7.4 71 2-81 21-101 (111)
235 2kt5_A RNA and export factor-b 99.5 6.9E-14 2.4E-18 111.5 8.4 73 2-83 41-116 (124)
236 2ek1_A RNA-binding protein 12; 99.5 1.7E-14 5.8E-19 109.4 4.6 69 3-80 22-94 (95)
237 2xnq_A Nuclear polyadenylated 99.5 7.6E-14 2.6E-18 106.5 8.2 66 3-81 29-95 (97)
238 2cqp_A RNA-binding protein 12; 99.5 1.7E-14 5.9E-19 110.0 4.6 71 2-81 21-95 (98)
239 2jvo_A Nucleolar protein 3; nu 99.5 6.3E-14 2.2E-18 109.2 7.9 67 2-81 37-103 (108)
240 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.8E-18 122.0 10.5 81 124-210 32-113 (229)
241 2diu_A KIAA0430 protein; struc 99.5 8.5E-14 2.9E-18 104.3 8.2 64 3-81 16-84 (96)
242 1nu4_A U1A RNA binding domain; 99.5 3.2E-14 1.1E-18 108.3 6.0 72 2-82 14-90 (97)
243 1s79_A Lupus LA protein; RRM, 99.5 4.9E-14 1.7E-18 108.9 7.1 69 2-80 17-88 (103)
244 2e44_A Insulin-like growth fac 99.5 5.6E-14 1.9E-18 106.7 7.2 71 3-82 22-93 (96)
245 1wg5_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 106.7 9.3 78 126-210 15-97 (104)
246 3n9u_C Cleavage and polyadenyl 99.5 2.7E-14 9.4E-19 118.7 5.9 73 2-83 61-139 (156)
247 2cqg_A TDP-43, TAR DNA-binding 99.5 2E-13 6.9E-18 105.1 10.3 76 125-208 14-94 (103)
248 1u6f_A Tcubp1, RNA-binding pro 99.5 5.4E-14 1.9E-18 114.3 7.5 71 3-82 49-123 (139)
249 2dgp_A Bruno-like 4, RNA bindi 99.5 5.4E-14 1.8E-18 108.8 7.0 74 2-81 19-96 (106)
250 3ex7_B RNA-binding protein 8A; 99.5 5.4E-14 1.9E-18 112.4 7.2 71 2-81 28-102 (126)
251 3ucg_A Polyadenylate-binding p 99.5 6.6E-14 2.2E-18 104.7 7.2 69 3-81 13-85 (89)
252 2cpy_A RNA-binding protein 12; 99.5 5.4E-14 1.8E-18 110.6 6.9 79 125-210 14-97 (114)
253 2dnp_A RNA-binding protein 14; 99.5 6.4E-14 2.2E-18 105.2 6.9 67 2-81 15-81 (90)
254 1x4e_A RNA binding motif, sing 99.5 1.6E-14 5.4E-19 107.3 3.4 69 2-79 11-83 (85)
255 2cpe_A RNA-binding protein EWS 99.5 4.9E-14 1.7E-18 110.4 6.2 72 2-82 21-104 (113)
256 2cpx_A Hypothetical protein FL 99.5 5.6E-14 1.9E-18 110.4 6.5 72 2-82 31-106 (115)
257 2db1_A Heterogeneous nuclear r 99.5 5.3E-14 1.8E-18 111.4 6.3 78 125-209 16-100 (118)
258 2div_A TRNA selenocysteine ass 99.5 4.1E-14 1.4E-18 108.1 5.4 70 3-81 16-94 (99)
259 1wf0_A TDP-43, TAR DNA-binding 99.5 5.3E-14 1.8E-18 105.2 5.9 74 125-208 4-79 (88)
260 2dhg_A TRNA selenocysteine ass 99.5 5E-14 1.7E-18 108.7 5.8 72 2-82 15-91 (104)
261 2f3j_A RNA and export factor b 99.5 1.5E-13 5.2E-18 116.6 9.3 80 124-209 86-169 (177)
262 1wg5_A Heterogeneous nuclear r 99.5 7.6E-14 2.6E-18 107.9 6.8 72 2-83 21-96 (104)
263 2dit_A HIV TAT specific factor 99.5 6.5E-14 2.2E-18 109.8 6.4 65 8-81 38-102 (112)
264 3u1l_A PRE-mRNA-splicing facto 99.5 1.1E-13 3.6E-18 122.5 8.5 78 124-208 132-230 (240)
265 2krb_A Eukaryotic translation 99.5 8E-14 2.7E-18 102.6 6.5 65 127-194 2-75 (81)
266 1fj7_A Nucleolin RBD1, protein 99.5 3.5E-14 1.2E-18 109.0 4.7 77 125-208 16-96 (101)
267 2cq4_A RNA binding motif prote 99.5 8.3E-14 2.8E-18 109.4 6.9 70 2-81 31-104 (114)
268 2krb_A Eukaryotic translation 99.5 3.1E-14 1.1E-18 104.9 4.2 65 3-76 8-81 (81)
269 2nlw_A Eukaryotic translation 99.5 6.7E-14 2.3E-18 108.4 6.2 70 3-81 22-100 (105)
270 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.1E-13 3.6E-18 114.9 7.8 71 2-81 45-119 (156)
271 2cqd_A RNA-binding region cont 99.5 7.2E-14 2.5E-18 110.0 6.4 70 2-81 23-96 (116)
272 1wez_A HnRNP H', FTP-3, hetero 99.5 1.7E-13 6E-18 105.6 8.4 76 125-208 14-93 (102)
273 2cqh_A IGF-II mRNA-binding pro 99.5 3.5E-14 1.2E-18 107.3 4.4 68 2-81 14-83 (93)
274 2fc8_A NCL protein; structure 99.5 1.7E-13 5.8E-18 105.2 8.3 75 125-208 14-93 (102)
275 2kvi_A Nuclear polyadenylated 99.5 1.1E-13 3.9E-18 105.2 7.2 67 3-82 17-84 (96)
276 3pgw_A U1-A; protein-RNA compl 99.5 4.1E-12 1.4E-16 115.1 18.7 79 124-208 7-91 (282)
277 3egn_A RNA-binding protein 40; 99.5 1.9E-13 6.6E-18 111.7 9.0 78 125-208 44-131 (143)
278 2pe8_A Splicing factor 45; RRM 99.5 1.9E-13 6.5E-18 105.9 8.4 66 7-81 24-94 (105)
279 2dh8_A DAZ-associated protein 99.4 7.2E-14 2.5E-18 108.0 5.9 72 1-82 21-96 (105)
280 1qm9_A Polypyrimidine tract-bi 99.4 2.1E-13 7.3E-18 117.1 9.4 79 126-210 3-82 (198)
281 1wf1_A RNA-binding protein RAL 99.4 9.6E-14 3.3E-18 108.3 6.5 67 2-81 33-100 (110)
282 2bz2_A Negative elongation fac 99.4 1.5E-13 5.1E-18 109.3 7.7 66 6-82 47-112 (121)
283 2hgl_A HNRPF protein, heteroge 99.4 6.1E-14 2.1E-18 113.8 5.5 77 126-209 44-127 (136)
284 2dit_A HIV TAT specific factor 99.4 3E-13 1E-17 106.0 9.3 78 125-208 14-103 (112)
285 2dng_A Eukaryotic translation 99.4 1.1E-13 3.9E-18 106.5 6.8 69 2-81 21-93 (103)
286 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.9E-13 6.4E-18 104.9 7.9 65 5-81 26-90 (100)
287 2j76_E EIF-4B, EIF4B, eukaryot 99.4 7.1E-14 2.4E-18 107.2 5.3 69 2-81 25-98 (100)
288 2i2y_A Fusion protein consists 99.4 1.1E-13 3.7E-18 114.1 6.8 69 3-81 80-148 (150)
289 2ki2_A SS-DNA binding protein 99.4 2.8E-14 9.7E-19 107.1 2.9 70 3-82 8-81 (90)
290 1uaw_A Mouse-musashi-1; RNP-ty 99.4 7.3E-14 2.5E-18 101.5 5.0 67 2-78 6-76 (77)
291 2db1_A Heterogeneous nuclear r 99.4 4.1E-14 1.4E-18 112.1 3.8 72 2-83 23-100 (118)
292 2rs2_A Musashi-1, RNA-binding 99.4 1.8E-13 6.1E-18 106.8 7.4 71 2-82 31-105 (109)
293 1x4b_A Heterogeneous nuclear r 99.4 1.2E-13 4.2E-18 108.7 6.5 71 2-82 33-107 (116)
294 1wi8_A EIF-4B, eukaryotic tran 99.4 1.9E-13 6.4E-18 105.5 7.4 68 3-81 22-94 (104)
295 2kn4_A Immunoglobulin G-bindin 99.4 1.2E-13 4.2E-18 114.6 6.8 71 2-81 76-150 (158)
296 2jwn_A Embryonic polyadenylate 99.4 1.3E-13 4.4E-18 109.9 6.6 69 3-81 43-115 (124)
297 1wel_A RNA-binding protein 12; 99.4 6.6E-14 2.3E-18 111.7 4.9 76 126-208 25-105 (124)
298 1iqt_A AUF1, heterogeneous nuc 99.4 7.8E-14 2.7E-18 100.9 4.6 69 131-204 2-75 (75)
299 2lea_A Serine/arginine-rich sp 99.4 9E-14 3.1E-18 112.8 5.4 71 2-81 53-127 (135)
300 2lcw_A RNA-binding protein FUS 99.1 1.1E-14 3.8E-19 114.8 0.0 78 125-208 6-96 (116)
301 2dgw_A Probable RNA-binding pr 99.4 1.8E-13 6.3E-18 102.9 6.7 69 2-81 16-87 (91)
302 2fc9_A NCL protein; structure 99.4 1E-13 3.5E-18 106.4 5.2 71 2-81 21-91 (101)
303 1wel_A RNA-binding protein 12; 99.4 2.8E-14 9.6E-19 113.9 2.1 72 2-83 31-106 (124)
304 2cpd_A Apobec-1 stimulating pr 99.4 3.4E-13 1.2E-17 103.1 8.1 66 3-81 22-89 (99)
305 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.1E-13 7.2E-18 110.7 7.2 67 3-78 70-140 (140)
306 3v4m_A Splicing factor U2AF 65 99.4 3.3E-13 1.1E-17 104.6 7.9 78 125-208 4-98 (105)
307 2lmi_A GRSF-1, G-rich sequence 99.4 8E-14 2.7E-18 108.3 4.4 77 126-209 11-94 (107)
308 1b7f_A Protein (SXL-lethal pro 99.4 4E-13 1.4E-17 111.8 9.0 77 126-208 3-84 (168)
309 3v4m_A Splicing factor U2AF 65 99.4 1.5E-13 5.2E-18 106.5 5.8 66 7-81 26-97 (105)
310 1x5o_A RNA binding motif, sing 99.4 3.4E-13 1.2E-17 105.8 7.9 78 2-80 31-111 (114)
311 2dis_A Unnamed protein product 99.4 1.7E-13 5.8E-18 106.5 6.1 71 2-81 14-92 (109)
312 1fjc_A Nucleolin RBD2, protein 99.4 1.1E-13 3.7E-18 105.1 4.9 70 2-81 22-91 (96)
313 2hgl_A HNRPF protein, heteroge 99.4 7.3E-14 2.5E-18 113.4 4.0 72 2-83 50-127 (136)
314 1fxl_A Paraneoplastic encephal 99.4 6.2E-13 2.1E-17 110.3 9.7 77 126-208 2-83 (167)
315 1wg1_A KIAA1579 protein, homol 99.4 2.8E-13 9.6E-18 101.3 6.9 69 3-83 12-80 (88)
316 2e5g_A U6 snRNA-specific termi 99.4 1.9E-13 6.5E-18 103.5 5.9 70 2-82 14-83 (94)
317 3s7r_A Heterogeneous nuclear r 99.4 2.4E-13 8.3E-18 101.2 6.3 66 3-78 18-87 (87)
318 1wez_A HnRNP H', FTP-3, hetero 99.4 1.9E-13 6.4E-18 105.4 5.8 70 2-82 21-93 (102)
319 4f02_A Polyadenylate-binding p 99.4 5E-13 1.7E-17 116.5 9.2 78 125-208 14-96 (213)
320 3s6e_A RNA-binding protein 39; 99.4 3.2E-13 1.1E-17 106.1 7.1 68 6-82 27-94 (114)
321 3beg_B Splicing factor, argini 99.4 2.3E-13 7.7E-18 107.2 6.3 66 2-79 22-92 (115)
322 1fj7_A Nucleolin RBD1, protein 99.4 6.1E-14 2.1E-18 107.6 2.8 69 3-81 24-95 (101)
323 1jmt_A Splicing factor U2AF 35 99.4 1.6E-13 5.6E-18 106.1 5.0 61 9-78 39-103 (104)
324 2hzc_A Splicing factor U2AF 65 99.4 3.9E-13 1.3E-17 100.0 6.9 69 126-202 6-85 (87)
325 2m2b_A RNA-binding protein 10; 99.4 1.1E-13 3.9E-18 111.5 4.2 71 2-82 29-109 (131)
326 2cpy_A RNA-binding protein 12; 99.4 1.6E-13 5.4E-18 107.9 4.8 71 3-83 22-96 (114)
327 2cqg_A TDP-43, TAR DNA-binding 99.4 4.8E-13 1.6E-17 102.9 7.4 70 2-82 21-94 (103)
328 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.1E-13 1.4E-17 112.5 7.5 72 2-82 78-153 (165)
329 2dnn_A RNA-binding protein 12; 99.4 7.9E-13 2.7E-17 103.1 8.6 75 126-208 16-94 (109)
330 3q2s_C Cleavage and polyadenyl 99.4 2.3E-13 7.8E-18 120.3 5.8 71 3-82 75-151 (229)
331 3d2w_A TAR DNA-binding protein 99.4 4.9E-13 1.7E-17 100.4 6.6 68 2-81 17-84 (89)
332 2dnn_A RNA-binding protein 12; 99.4 6.2E-13 2.1E-17 103.7 7.2 70 2-82 22-94 (109)
333 2lmi_A GRSF-1, G-rich sequence 99.4 9.2E-14 3.1E-18 108.0 2.4 72 2-83 17-94 (107)
334 1iqt_A AUF1, heterogeneous nuc 99.4 1.9E-13 6.5E-18 98.8 3.9 67 2-78 5-75 (75)
335 2f3j_A RNA and export factor b 99.4 6.1E-13 2.1E-17 112.9 7.6 72 2-82 94-168 (177)
336 2fc8_A NCL protein; structure 99.4 4.7E-13 1.6E-17 102.8 6.1 71 2-81 21-92 (102)
337 2hgn_A Heterogeneous nuclear r 99.4 2.3E-13 7.7E-18 110.8 4.6 75 126-208 46-124 (139)
338 3md3_A Nuclear and cytoplasmic 99.4 8.4E-13 2.9E-17 109.4 8.1 75 128-208 2-80 (166)
339 3s6e_A RNA-binding protein 39; 99.4 1.9E-12 6.4E-17 101.7 9.6 80 125-210 6-96 (114)
340 2xs2_A Deleted in azoospermia- 99.4 3E-13 1E-17 103.9 4.9 75 126-208 9-87 (102)
341 2hgn_A Heterogeneous nuclear r 99.4 2.2E-13 7.6E-18 110.9 4.2 72 1-83 51-125 (139)
342 3ue2_A Poly(U)-binding-splicin 99.4 9.8E-13 3.4E-17 104.0 7.8 78 125-208 19-110 (118)
343 3egn_A RNA-binding protein 40; 99.4 5.1E-13 1.8E-17 109.1 6.0 70 3-81 52-130 (143)
344 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.4E-12 4.8E-17 100.0 7.4 65 138-208 27-91 (100)
345 2dnl_A Cytoplasmic polyadenyla 99.4 2.6E-12 8.9E-17 100.9 9.0 72 125-205 7-86 (114)
346 2lcw_A RNA-binding protein FUS 99.0 7.1E-14 2.4E-18 110.1 0.0 72 2-82 13-96 (116)
347 2dha_A FLJ20171 protein; RRM d 99.3 4.9E-13 1.7E-17 106.6 4.4 78 126-210 23-108 (123)
348 2qfj_A FBP-interacting repress 99.3 2.4E-12 8.2E-17 111.6 9.2 77 126-208 28-109 (216)
349 2dha_A FLJ20171 protein; RRM d 99.3 2.2E-13 7.6E-18 108.6 2.3 73 2-84 29-108 (123)
350 3nmr_A Cugbp ELAV-like family 99.3 2.3E-12 7.8E-17 107.8 8.6 80 126-208 3-89 (175)
351 2hgm_A HNRPF protein, heteroge 99.3 5.4E-13 1.8E-17 106.7 4.3 71 2-83 48-123 (126)
352 3tht_A Alkylated DNA repair pr 99.3 2.3E-12 7.7E-17 119.9 9.1 79 124-206 16-98 (345)
353 3ue2_A Poly(U)-binding-splicin 99.3 2.4E-12 8.1E-17 101.8 7.5 64 9-81 38-109 (118)
354 2hgm_A HNRPF protein, heteroge 99.3 1E-12 3.5E-17 105.1 5.3 75 126-208 42-122 (126)
355 2hzc_A Splicing factor U2AF 65 99.3 1.6E-12 5.4E-17 96.7 5.8 64 2-77 12-86 (87)
356 2xs2_A Deleted in azoospermia- 99.3 1.1E-12 3.9E-17 100.6 4.8 69 2-81 15-86 (102)
357 3sde_A Paraspeckle component 1 99.3 8.1E-12 2.8E-16 112.2 10.5 76 125-207 21-96 (261)
358 2j8a_A Histone-lysine N-methyl 99.3 2.3E-12 8E-17 102.0 5.2 69 4-81 14-96 (136)
359 2cjk_A Nuclear polyadenylated 99.3 3.2E-12 1.1E-16 106.3 6.3 69 3-81 94-166 (167)
360 2j8a_A Histone-lysine N-methyl 99.3 3.6E-12 1.2E-16 100.9 5.9 74 128-207 4-96 (136)
361 1jmt_A Splicing factor U2AF 35 99.3 9.3E-13 3.2E-17 101.9 2.4 67 134-204 21-103 (104)
362 1l3k_A Heterogeneous nuclear r 99.3 5.1E-12 1.7E-16 107.9 7.3 77 125-208 12-93 (196)
363 3pgw_S U1-70K; protein-RNA com 99.3 5.7E-12 2E-16 121.4 8.2 73 1-82 107-183 (437)
364 1fje_B Nucleolin RBD12, protei 99.3 5.8E-12 2E-16 105.7 7.1 69 3-81 106-174 (175)
365 3u1l_A PRE-mRNA-splicing facto 99.3 8.1E-12 2.8E-16 110.4 7.5 68 9-81 156-229 (240)
366 3tht_A Alkylated DNA repair pr 99.3 4.2E-12 1.4E-16 118.1 5.9 68 4-79 28-97 (345)
367 1wf0_A TDP-43, TAR DNA-binding 99.2 3.4E-12 1.2E-16 95.2 3.1 68 3-82 12-79 (88)
368 2voo_A Lupus LA protein; RNA-b 99.2 1.5E-11 5.2E-16 105.7 7.4 73 126-205 109-185 (193)
369 2g4b_A Splicing factor U2AF 65 99.2 2.3E-11 7.9E-16 101.5 7.6 74 126-207 4-88 (172)
370 2dnl_A Cytoplasmic polyadenyla 99.2 2.2E-11 7.4E-16 95.5 6.2 66 2-79 14-86 (114)
371 2yh0_A Splicing factor U2AF 65 99.2 3.4E-11 1.2E-15 102.8 7.8 74 126-207 4-88 (198)
372 2voo_A Lupus LA protein; RNA-b 99.2 2.4E-11 8.2E-16 104.4 6.4 68 2-79 115-185 (193)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 1.5E-10 5.1E-15 85.9 8.6 76 123-206 4-85 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.0 3E-10 1E-14 84.2 6.3 57 11-81 30-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.0 2.3E-09 8E-14 84.4 10.2 74 124-204 16-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 1.1E-09 3.6E-14 81.7 7.1 74 123-204 12-92 (95)
377 3dxb_A Thioredoxin N-terminall 98.9 2.3E-09 7.7E-14 93.8 7.8 66 7-81 140-213 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 2E-09 6.8E-14 80.2 5.0 55 11-79 39-93 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.8 2E-08 7E-13 76.3 8.2 71 126-203 21-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.7 1.9E-08 6.7E-13 87.8 6.8 64 141-208 142-214 (222)
381 1owx_A Lupus LA protein, SS-B, 98.6 6E-08 2.1E-12 76.3 7.2 66 3-79 25-94 (121)
382 2l9w_A U4/U6 snRNA-associated- 98.2 1.9E-06 6.6E-11 65.5 6.3 61 5-76 30-95 (117)
383 1wey_A Calcipressin 1; structu 98.1 1.3E-05 4.4E-10 60.6 7.7 75 127-208 6-85 (104)
384 1wey_A Calcipressin 1; structu 97.8 2.4E-05 8.1E-10 59.2 4.3 61 11-82 25-85 (104)
385 1wwh_A Nucleoporin 35, nucleop 97.3 0.00079 2.7E-08 52.2 7.4 62 129-194 25-86 (119)
386 1whv_A Poly(A)-specific ribonu 97.1 0.0016 5.5E-08 48.4 7.1 56 126-188 16-71 (100)
387 2dhx_A Poly (ADP-ribose) polym 97.0 0.0042 1.4E-07 46.7 8.3 67 126-202 8-79 (104)
388 3ctr_A Poly(A)-specific ribonu 96.6 0.0038 1.3E-07 46.5 5.9 57 127-190 7-63 (101)
389 1uw4_A UPF3X; nonsense mediate 96.6 0.017 5.7E-07 42.6 9.2 75 131-205 4-86 (91)
390 3pq1_A Poly(A) RNA polymerase; 96.3 0.0019 6.4E-08 62.0 3.1 56 126-185 53-108 (464)
391 3pq1_A Poly(A) RNA polymerase; 96.2 0.002 6.7E-08 61.8 2.6 49 4-53 60-108 (464)
392 1wwh_A Nucleoporin 35, nucleop 96.0 0.017 5.7E-07 44.7 6.7 47 10-59 37-83 (119)
393 1whv_A Poly(A)-specific ribonu 95.8 0.018 6.1E-07 42.8 5.8 45 7-55 26-70 (100)
394 3p3d_A Nucleoporin 53; structu 95.7 0.0045 1.5E-07 48.7 2.5 68 131-204 10-96 (132)
395 3ctr_A Poly(A)-specific ribonu 95.5 0.018 6E-07 43.0 4.7 46 7-56 16-61 (101)
396 2dhx_A Poly (ADP-ribose) polym 94.5 0.093 3.2E-06 39.4 6.3 46 4-53 16-66 (104)
397 1uw4_A UPF3X; nonsense mediate 94.3 0.21 7.1E-06 36.7 7.8 56 4-59 9-70 (91)
398 2l08_A Regulator of nonsense t 94.0 0.1 3.6E-06 38.7 5.6 75 130-204 11-93 (97)
399 3p3d_A Nucleoporin 53; structu 92.7 0.056 1.9E-06 42.4 2.4 61 9-79 19-97 (132)
400 3d45_A Poly(A)-specific ribonu 87.2 1.5 5.3E-05 42.4 8.0 57 126-189 440-496 (507)
401 2l08_A Regulator of nonsense t 81.2 2.2 7.4E-05 31.5 4.6 57 3-59 16-78 (97)
402 3d45_A Poly(A)-specific ribonu 73.8 4.9 0.00017 38.8 6.1 47 7-57 450-496 (507)
403 2g0c_A ATP-dependent RNA helic 61.6 26 0.00088 23.9 6.3 68 129-205 3-75 (76)
404 2g0c_A ATP-dependent RNA helic 53.6 17 0.00057 24.9 4.2 57 9-79 14-75 (76)
405 4eyt_A Telomerase associated p 40.8 98 0.0034 22.2 7.8 58 126-189 12-69 (129)
406 2m0o_A PHD finger protein 1; t 31.7 31 0.0011 23.9 2.5 21 21-45 45-65 (79)
407 2f06_A Conserved hypothetical 29.4 1.8E+02 0.0063 21.9 12.7 49 142-192 86-136 (144)
408 2lfv_A Protein DAMX; cell divi 35.0 12 0.0004 28.0 0.0 48 140-188 34-86 (106)
409 3ts2_A Protein LIN-28 homolog 28.7 11 0.00037 30.0 -0.3 30 10-43 1-30 (148)
410 2e5p_A Protein PHF1, PHD finge 28.3 22 0.00076 24.0 1.3 20 21-44 28-47 (68)
411 2od0_A Hypothetical protein VP 25.9 49 0.0017 24.2 3.0 22 8-29 4-25 (105)
412 2eqj_A Metal-response element- 25.2 49 0.0017 22.3 2.5 20 21-44 32-51 (66)
413 4hcz_A PHD finger protein 1; p 24.0 55 0.0019 21.4 2.5 21 21-45 22-42 (58)
414 2e5q_A PHD finger protein 19; 23.1 30 0.001 23.0 1.2 12 33-44 34-45 (63)
415 1wvf_A 4-cresol dehydrogenase 22.9 56 0.0019 31.3 3.6 41 13-53 218-263 (520)
416 1ik9_C DNA ligase IV; DNA END 21.5 47 0.0016 19.6 1.7 14 7-20 21-34 (37)
417 1cqm_A Ribosomal protein S6; a 21.4 58 0.002 23.7 2.6 51 2-52 8-76 (101)
418 2cu1_A Mitogen-activated prote 21.2 2.1E+02 0.0072 20.9 5.4 60 8-81 28-88 (103)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2.5e-30 Score=227.05 Aligned_cols=154 Identities=19% Similarity=0.231 Sum_probs=133.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++||++|+++|++||+|.+|.+++ +++++||||+|.+.++|.+|++.||+..+ .|+.|++.++
T Consensus 22 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~---------~g~~i~~~~~ 92 (213)
T 4f02_A 22 DLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI---------KGKPVRIMWS 92 (213)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc---------CCcccccccc
Confidence 5689999999999999999999998876 34567999999999999999999999987 8999999988
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
........ .....|| |.||+.++|+++|+++|+.||.|++|
T Consensus 93 ~~~~~~~~-------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~F~~~G~i~~~ 133 (213)
T 4f02_A 93 QRDPSLRK-------------------------------------SGVGNIF--IKNLDKSIDNKALYDTFSAFGNILSC 133 (213)
T ss_dssp CCCTHHHH-------------------------------------HCTTEEE--EESCCTTCCHHHHHHHHGGGSCEEEE
T ss_pred cccccccc-------------------------------------cccccce--ECCcccccHHHHHHHHHhhcCCeEEE
Confidence 75432111 0144577 89999999999999999999999999
Q ss_pred EEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 159 AMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 159 ~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
+|+++. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++.+.
T Consensus 134 ~i~~d~~~~~g~-~fV~f~~~~~a~~Ai~~lng~~~~g~---~i~V~~a~~~~ 182 (213)
T 4f02_A 134 KVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFKSRK 182 (213)
T ss_dssp EEEEETTEEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCCHH
T ss_pred EeeccCCCCceE-EEEEeCCHHHHHHHHHHhCCCEECCE---EEEEEEcCCCc
Confidence 987643 455 99999999999999999999999998 99999997654
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.3e-29 Score=221.45 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=133.9
Q ss_pred CCC-CCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTL-SLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~-~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.+ +++|+++|+++|++||.|.+|++++.+ +++|||+|.+.++|.+||+.|||..+ .|+.|+|.+|+.+
T Consensus 11 nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~~---------~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 11 GLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNFM---------FGQKMNVCVSKQP 80 (205)
T ss_dssp CCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEECSCS
T ss_pred CCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCEE---------CCceEEEEEccCC
Confidence 445 899999999999999999999998753 57999999999999999999999998 7999999999865
Q ss_pred ccccccc---Cc---cccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCe
Q 020065 82 DLSVKFQ---SH---RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 155 (331)
Q Consensus 82 ~l~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V 155 (331)
....... .. ..+++.......... . .........+++++|+ |.||++++|+++|+++|+.||.|
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~-------~-~~~~~~~~~~p~~~l~--v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 81 AIMPGQSYGLEDGSCSYKDFSESRNNRFST-------P-EQAAKNRIQHPSNVLH--FFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp CCCCCSCCBCTTSCBSEEECTTCTTCSCSS-------H-HHHTTSCCCCCCSEEE--EEEECTTCCHHHHHHHHHHHTCC
T ss_pred ccCCCcccccccCCccccccCCCccccccC-------c-ccccccccCCCcceEE--EeCCCCCCCHHHHHHHHHhcCCc
Confidence 4321100 00 001111100000000 0 0000011234578888 88999999999999999999999
Q ss_pred --eEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCC-ceEEEEEee
Q 020065 156 --QKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGG-FCKLHISYS 204 (331)
Q Consensus 156 --~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~-~~~l~v~~a 204 (331)
.+++++.++ +|+ |||+|.+.++|.+|++.|||..|.+.+ ..++.|+|+
T Consensus 151 ~~~~v~~~~~~~~~~g~-gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGKSERSSS-GLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCCSSSSEE-EEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCCCCCceE-EEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 899998753 355 999999999999999999999998874 335666664
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.2e-29 Score=209.25 Aligned_cols=151 Identities=16% Similarity=0.254 Sum_probs=130.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+.+. .++++|||+|.+.++|.+|++.|||..+ .|+.|+|.+
T Consensus 8 ~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g~~l~v~~ 78 (167)
T 1fxl_A 8 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL---------QTKTIKVSY 78 (167)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEE
T ss_pred cCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc---------CCceEEEEe
Confidence 356889999999999999999999988762 2447999999999999999999999988 899999999
Q ss_pred eccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 78 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 78 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
+..+.... .++.|+ |.||+..+++++|+++|+.||.|.+
T Consensus 79 ~~~~~~~~---------------------------------------~~~~l~--v~nl~~~~t~~~l~~~f~~~G~i~~ 117 (167)
T 1fxl_A 79 ARPSSASI---------------------------------------RDANLY--VSGLPKTMTQKELEQLFSQYGRIIT 117 (167)
T ss_dssp CCCCCGGG---------------------------------------TTCEEE--EESCCTTCCHHHHHHHHGGGSCEEE
T ss_pred cCCCcccC---------------------------------------CCCcEE--ECCCCCcCCHHHHHHHHHhcCCEeE
Confidence 87543211 245677 8899999999999999999999999
Q ss_pred EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 158 IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 158 v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
+++..+. +|+ |||+|.+.++|.+|++.|||..|.++ ...|+|+||
T Consensus 118 ~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~v~~A 167 (167)
T 1fxl_A 118 SRILVDQVTGVSRGV-GFIRFDKRIEAEEAIKGLNGQKPSGA-TEPITVKFA 167 (167)
T ss_dssp EEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred EEEEecCCCCCccce-EEEEeCCHHHHHHHHHHhcCCccCCC-ccceEEEeC
Confidence 9987653 455 99999999999999999999999886 346999886
No 4
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.96 E-value=8.9e-29 Score=225.71 Aligned_cols=189 Identities=20% Similarity=0.290 Sum_probs=137.0
Q ss_pred CCCCCCcHHHHH----HhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 3 LTLSLLKVIFIL----QVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 3 ~~~~~vtee~L~----~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
+.++++|+++|+ ++|++||.|.+|++.+ +++++||||+|.+.++|.+|++.|||..| .|+.|+|.|
T Consensus 16 nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~ 86 (282)
T 3pgw_A 16 NLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF---------YDKPMRIQY 86 (282)
T ss_pred CCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee---------CCcEEEEEE
Confidence 567899999966 9999999999998876 45678999999999999999999999987 799999999
Q ss_pred ecccccccc-ccCc-----ccc-------CCC---CCCCC-----CCCcccCc---------------------------
Q 020065 78 SAHTDLSVK-FQSH-----RSR-------DYT---NPYLP-----VAPSAIDA--------------------------- 109 (331)
Q Consensus 78 s~~~~l~~~-~~~~-----~~~-------~~~---~~~~~-----~~~~~~~~--------------------------- 109 (331)
++.+..... .... +.+ +.. ..... ........
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 975432110 0000 000 000 00000 00000000
Q ss_pred ------cCCccc-----------------c-CCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCC
Q 020065 110 ------SGQLSV-----------------G-LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 165 (331)
Q Consensus 110 ------~~~~~~-----------------~-~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~ 165 (331)
.+.... . ........++++|| |.||+..+|+++|+++|++||.|++|+++++++
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILF--LTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEE--EeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 000000 0 00001223567788 889999999999999999999999999998887
Q ss_pred CeeEEEEcCCHHHHHHHHHHhcCCccc-CCCceEEEEEeecC
Q 020065 166 GLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRH 206 (331)
Q Consensus 166 g~~afV~f~~~~~A~~Ai~~lng~~i~-~~~~~~l~v~~ak~ 206 (331)
|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+|+|.
T Consensus 245 g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~akk 282 (282)
T 3pgw_A 245 DI-AFVEFDNEVQAGAARDALQGFKITQNN---AMKISFAKK 282 (282)
T ss_pred cE-EEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEEEecC
Confidence 76 999999999999999999999999 77 999999973
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.6e-29 Score=207.83 Aligned_cols=152 Identities=16% Similarity=0.233 Sum_probs=131.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+.++++|+++|+++|+.||.|.+|.+.+ ++++++|||+|.+.++|.+|++.|||..+ .|+.|+|.++.
T Consensus 7 nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~i~v~~~~ 77 (166)
T 3md3_A 7 NLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI---------ENNIVKINWAF 77 (166)
T ss_dssp EEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEECC
T ss_pred CCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc---------CCCeeEEEEcC
Confidence 4578999999999999999999998876 33567999999999999999999999988 89999999987
Q ss_pred cccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE
Q 020065 80 HTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 159 (331)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~ 159 (331)
.+.... ...+++|+ |.||+..+|+++|+++|+.||.|.+++
T Consensus 78 ~~~~~~-------------------------------------~~~~~~l~--v~nl~~~~t~~~l~~~f~~~G~i~~~~ 118 (166)
T 3md3_A 78 QSQQSS-------------------------------------SDDTFNLF--VGDLNVNVDDETLRNAFKDFPSYLSGH 118 (166)
T ss_dssp CCCCCC-------------------------------------CTTCEEEE--EESCCTTCCHHHHHHHHTTSTTEEEEE
T ss_pred CCCCCC-------------------------------------CCCCceEE--ECCCCCCCCHHHHHHHHhccCCeeEEE
Confidence 543210 11356677 889999999999999999999999999
Q ss_pred EEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecC
Q 020065 160 MFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 206 (331)
Q Consensus 160 i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~ 206 (331)
+..+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||+.
T Consensus 119 i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~ 166 (166)
T 3md3_A 119 VMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWAAK 166 (166)
T ss_dssp EEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESCC
T ss_pred EEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCCccCCc---EEEEEecCC
Confidence 87542 345 99999999999999999999999988 999999863
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=4.7e-29 Score=209.52 Aligned_cols=150 Identities=19% Similarity=0.267 Sum_probs=130.0
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||.|.+|.+++. .++++|||+|.+.++|.+|++.|||..+ .|+.|+|.++
T Consensus 10 nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---------~g~~l~v~~~ 80 (168)
T 1b7f_A 10 YLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV---------RNKRLKVSYA 80 (168)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe---------CCcEEEEEec
Confidence 56789999999999999999999988762 2457999999999999999999999988 8999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
..+... ..+++|+ |.||+..+++++|+++|+.||.|.++
T Consensus 81 ~~~~~~---------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~f~~~G~i~~~ 119 (168)
T 1b7f_A 81 RPGGES---------------------------------------IKDTNLY--VTNLPRTITDDQLDTIFGKYGSIVQK 119 (168)
T ss_dssp CCCSST---------------------------------------TTTCEEE--EESCCTTCCHHHHHHHHTSSSCEEEE
T ss_pred CCCccc---------------------------------------CCCCCEE--EeCCCCCCCHHHHHHhhhcCCcEEEE
Confidence 754221 1256777 88999999999999999999999999
Q ss_pred EEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 159 AMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 159 ~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
++.+++ +|+ |||+|.+.++|.+|++.|||..|.++ ...|+|+||
T Consensus 120 ~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l~V~~A 168 (168)
T 1b7f_A 120 NILRDKLTGRPRGV-AFVRYNKREEAQEAISALNNVIPEGG-SQPLSVRLA 168 (168)
T ss_dssp EEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCCCTTC-SSCCEEEEC
T ss_pred EEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhcCCEecCC-CeEEEEEeC
Confidence 987654 345 99999999999999999999999873 349999986
No 7
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.96 E-value=1.8e-28 Score=217.59 Aligned_cols=180 Identities=26% Similarity=0.335 Sum_probs=137.9
Q ss_pred CCCC-CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLS-LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~-~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++ ++|+++|+++|++||.|.+|.+.+.+ ++||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 41 nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g~~l~v~~a~~~ 110 (229)
T 2adc_A 41 NLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPIRITLSKHQ 110 (229)
T ss_dssp SCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBC---------SSSBCEEECCSCC
T ss_pred CCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEEEecCc
Confidence 4567 99999999999999999999998754 56899999999999999999999987 7999999999855
Q ss_pred ccccccc----CccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCC-Cee
Q 020065 82 DLSVKFQ----SHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG-PVQ 156 (331)
Q Consensus 82 ~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG-~V~ 156 (331)
....... ....+++......... .... .......+++++|+ |.||+..+++++|+++|+.|| .|.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 111 NVQLPREGQEDQGLTKDYGNSPLHRFK-------KPGS-KNFQNIFPPSATLH--LSNIPPSVSEEDLKVLFSSNGGVVK 180 (229)
T ss_dssp CCCCCCSSSSTTTTEEECTTCSSCCCC-------STTS-GGGTTCCCSCSEEE--EECCCTTCCHHHHHHHHHTTSCCEE
T ss_pred cccCccccccccccccccccCcccccC-------Cccc-cccccCCCCCCEEE--EeCCCccCCHHHHHHHHHHcCCCee
Confidence 3222110 0111111111000000 0000 00001124577888 889999999999999999999 999
Q ss_pred EEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCccc-CCCceEEEEEeecC
Q 020065 157 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRH 206 (331)
Q Consensus 157 ~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~-~~~~~~l~v~~ak~ 206 (331)
+|+++.+++|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+|++.
T Consensus 181 ~v~i~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~~g~---~l~v~~a~~ 227 (229)
T 2adc_A 181 GFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKS 227 (229)
T ss_dssp EEEECSSSTTC-EEEEESSHHHHHHHHHHHTTCBSSSSC---BCEEEECSS
T ss_pred EEEEEECCCcE-EEEEECCHHHHHHHHHHHCCCccCCCC---eEEEEEecC
Confidence 99998877776 999999999999999999999998 77 999999875
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=5.9e-29 Score=217.49 Aligned_cols=164 Identities=16% Similarity=0.176 Sum_probs=133.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||+|.+|.+++ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 34 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~g~~l~v~~ 104 (216)
T 2qfj_A 34 GSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML---------GGRNIKVGR 104 (216)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC---------C-CCCEEEC
T ss_pred ECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee---------CCeeEEEec
Confidence 35688999999999999999999999875 33678999999999999999999999987 899999998
Q ss_pred eccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 78 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 78 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
+............... .....++|+ |.||+.++|+++|+++|+.||.|++
T Consensus 105 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~ 154 (216)
T 2qfj_A 105 PSNIGQAQPIIDQLAE----------------------------EARAFNRIY--VASVHQDLSDDDIKSVFEAFGKIKS 154 (216)
T ss_dssp CSCCGGGHHHHHHHHH----------------------------HHTTSCEEE--EECCCTTCCHHHHHHHHTTSSCEEE
T ss_pred CCCccccchhhhhhhc----------------------------ccCCCcEEE--EeCCCCcCCHHHHHHHHhccCCeeE
Confidence 7754321100000000 001256777 8899999999999999999999999
Q ss_pred EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 158 IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 158 v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
|++.++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|++...
T Consensus 155 v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~l~g~~~~g~---~i~V~~a~~~~ 206 (216)
T 2qfj_A 155 ATLARDPTTGKHKGY-GFIEYEKAQSSQDAVSSMNLFDLGGQ---YLRVGKAVTPP 206 (216)
T ss_dssp EEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBCSSS---BCEEEECSSCS
T ss_pred EEEEecCCCCCcCce-EEEEecCHHHHHHHHHHccCCEeCCc---EEEEEEecCCC
Confidence 9998653 455 99999999999999999999999998 99999987654
No 9
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.96 E-value=2.3e-28 Score=211.45 Aligned_cols=181 Identities=26% Similarity=0.339 Sum_probs=138.4
Q ss_pred CCCC-CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLS-LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~-~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++ ++|+++|+++|++||.|.+|.+.+.+ +++|||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 10 nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 10 NLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKL---------HGKPIRITLSKHQ 79 (198)
T ss_dssp CCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCC---------SSCCCEEEECCCC
T ss_pred CCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCee---------cCeEEEEEEecCC
Confidence 4567 99999999999999999999988754 56899999999999999999999987 8999999999865
Q ss_pred ccccccc----CccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCC-Cee
Q 020065 82 DLSVKFQ----SHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG-PVQ 156 (331)
Q Consensus 82 ~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG-~V~ 156 (331)
....... .....++........ .... ........+++++|+ |.||+..+|+++|+++|+.|| .|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~-------~~~~-~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRF-------KKPG-SKNFQNIFPPSATLH--LSNIPPSVSEEDLKVLFSSNGGVVK 149 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSS-------SSCC-CCCCSCCCCCCCEEE--ECCCCTTCCHHHHHHHHHHTTSCCC
T ss_pred CcCCCCcCCccccccccccCCchhhc-------cCcc-ccccccCCCCccEEE--EeCCCCCCCHHHHHHHHHHcCCCce
Confidence 3222110 011111111100000 0000 000011234578888 899999999999999999999 999
Q ss_pred EEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCccc-CCCceEEEEEeecCC
Q 020065 157 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 207 (331)
Q Consensus 157 ~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~-~~~~~~l~v~~ak~~ 207 (331)
+|+++++++|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+|++.+
T Consensus 150 ~v~i~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a~~~ 197 (198)
T 1qm9_A 150 GFKFFQKDRKM-ALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 197 (198)
T ss_dssp EEEESSTTSSC-EEEECSSHHHHHHHHHHHTSSCCSSCC---SCCEEEECCC
T ss_pred EEEEEeCCCcE-EEEEeCCHHHHHHHHHHhcCCccCCCC---eEEEEeeccc
Confidence 99998877776 999999999999999999999998 77 9999998753
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.2e-28 Score=206.60 Aligned_cols=156 Identities=16% Similarity=0.221 Sum_probs=128.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec------CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~------~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.++++|+++|+++|++||+|.+|.+++. ++++||||+|.+.++|.+|++.|||..+. ...++.+++.
T Consensus 10 nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~------~~~~~~~~~~ 83 (175)
T 3nmr_A 10 QVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVL------PGMHHPIQMK 83 (175)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCC------TTCSSCCEEE
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEc------cCCccceEEc
Confidence 56889999999999999999999988863 45679999999999999999999998772 0136778887
Q ss_pred eeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCee
Q 020065 77 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 156 (331)
Q Consensus 77 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~ 156 (331)
++....... ..+++|+ |.||+.++|+++|+++|+.||.|.
T Consensus 84 ~~~~~~~~~--------------------------------------~~~~~l~--v~nl~~~~t~~~l~~~F~~~G~i~ 123 (175)
T 3nmr_A 84 PADSEKNNA--------------------------------------VEDRKLF--IGMISKKCTENDIRVMFSSFGQIE 123 (175)
T ss_dssp ECGGGCCSC--------------------------------------GGGSEEE--EESCCTTCCHHHHHHHHGGGSCEE
T ss_pred ccccccccc--------------------------------------CCCCeEE--EcCCCCcCCHHHHHHHHHhCCCEE
Confidence 766442210 1245677 889999999999999999999999
Q ss_pred EEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 157 KIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 157 ~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
+|++.++. +|+ |||+|.+.++|.+|++.|||..+.+++.+.|+|+||+
T Consensus 124 ~v~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 124 ECRILRGPDGLSRGC-AFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEEEECCCCCEEEE-EEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99998763 345 9999999999999999999999886322499999974
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.95 E-value=1.6e-27 Score=205.30 Aligned_cols=158 Identities=10% Similarity=0.103 Sum_probs=126.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+++. .+++||||+|.+.++|.+|++. ++..+ .|+.|+|.+
T Consensus 19 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~---------~g~~l~v~~ 88 (196)
T 1l3k_A 19 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV---------DGRVVEPKR 88 (196)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE---------CCEEeeeec
Confidence 356889999999999999999999988762 3467999999999999999976 88777 899999999
Q ss_pred eccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 78 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 78 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
+.......... .....++|+ |.||+.++|+++|+++|+.||.|++
T Consensus 89 ~~~~~~~~~~~---------------------------------~~~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~ 133 (196)
T 1l3k_A 89 AVSREDSQRPG---------------------------------AHLTVKKIF--VGGIKEDTEEHHLRDYFEQYGKIEV 133 (196)
T ss_dssp CCC--------------------------------------------CCSEEE--EECCTTTCCHHHHHHHHTTTSCEEE
T ss_pred ccCcccccccc---------------------------------cCCCcceEE--EeCCCCCCCHHHHHHHHhcCCCeEE
Confidence 87543211000 011356777 8899999999999999999999999
Q ss_pred EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCc
Q 020065 158 IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 158 v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~ 209 (331)
|++..+. +|+ |||+|.+.++|.+|++. +|..|.|+ .|+|+|+..+..
T Consensus 134 v~i~~~~~~g~~~g~-afV~F~~~~~A~~A~~~-~~~~~~G~---~i~v~~a~~k~~ 185 (196)
T 1l3k_A 134 IEIMTDRGSGKKRGF-AFVTFDDHDSVDKIVIQ-KYHTVNGH---NCEVRKALSKQE 185 (196)
T ss_dssp EEEEECTTTCCEEEE-EEEEESSHHHHHHHHHC-SCCEETTE---ECEEEECC----
T ss_pred EEEeecCCCCCccce-EEEEECCHHHHHHHHHh-CCcEECCE---EEEEEecCChhH
Confidence 9988653 455 99999999999999987 79999998 999999876653
No 12
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.95 E-value=1e-27 Score=192.87 Aligned_cols=109 Identities=49% Similarity=0.746 Sum_probs=100.3
Q ss_pred CCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 121 KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 121 ~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
....++++|+|+|+||++.+|+++|+++|++||.|.+|+|+++++|++|||+|.+.++|.+|++.|||..|+++ ||+|+
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~Lr 99 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLR 99 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEE
Confidence 44567999999999999999999999999999999999999888888899999999999999999999999996 88999
Q ss_pred EEeecCCCcccccCCCCCCCCCCCCCCCCC
Q 020065 201 ISYSRHTDLSIKVNNDRSRDYTLPSTPMVN 230 (331)
Q Consensus 201 v~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (331)
|+|||...+++++|++++||||++.||...
T Consensus 100 I~~ak~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 100 IDFSKLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp EEECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred EEecCCCceeEEecCCCcccCCCCCCCCCC
Confidence 999999999999999999999999987643
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.4e-27 Score=199.93 Aligned_cols=145 Identities=20% Similarity=0.282 Sum_probs=125.5
Q ss_pred CCCCCCcHHHHHHhhccc----C-------ceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc
Q 020065 3 LTLSLLKVIFILQVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 71 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~f----G-------~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~ 71 (331)
+.++++|+++|+++|++| | .|.++.+.+ ++++|||+|.+.++|.+|+ .|||..+ .|+
T Consensus 11 nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~---------~g~ 78 (172)
T 2g4b_A 11 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF---------QGQ 78 (172)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEE---------TTE
T ss_pred CCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEe---------cCc
Confidence 568899999999999999 6 677776654 5689999999999999999 8999988 899
Q ss_pred eEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHcc
Q 020065 72 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 151 (331)
Q Consensus 72 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~ 151 (331)
.|+|.+++..... ...++|+ |.||+..+|+++|+++|+.
T Consensus 79 ~i~v~~~~~~~~~---------------------------------------~~~~~l~--v~nlp~~~t~~~l~~~f~~ 117 (172)
T 2g4b_A 79 SLKIRRPHDYQPL---------------------------------------PGAHKLF--IGGLPNYLNDDQVKELLTS 117 (172)
T ss_dssp ECEEECCSSCCCC---------------------------------------TTTTCEE--EECCCTTCCHHHHHHHHHT
T ss_pred eeeecCCcccCCC---------------------------------------CCCCEEE--EEcCCCcCCHHHHHHHHHh
Confidence 9999986643211 1145677 8899999999999999999
Q ss_pred CCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 152 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 152 fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
||.|.++++.+++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+||
T Consensus 118 ~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~A 171 (172)
T 2g4b_A 118 FGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRA 171 (172)
T ss_dssp TSCEEEEEEEECTTTCSEEEE-EEEEESSTTHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred cCCceEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHcCCCEECCe---EEEEEeC
Confidence 9999999987763 455 99999999999999999999999998 9999997
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=5.6e-27 Score=202.15 Aligned_cols=169 Identities=18% Similarity=0.225 Sum_probs=130.9
Q ss_pred CCCCCCcHHHHHHhhcccC-----------ceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc
Q 020065 3 LTLSLLKVIFILQVFSAFG-----------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC 71 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG-----------~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~ 71 (331)
+.++++|+++|+++|+.|| .|.++.+.+ +++||||+|.+.++|.+|+ .|||..| .|+
T Consensus 11 nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~---------~g~ 78 (198)
T 2yh0_A 11 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF---------QGQ 78 (198)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEE---------TTE
T ss_pred CCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEE---------cCc
Confidence 5688999999999999994 555655543 5689999999999999999 8999987 899
Q ss_pred eEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHcc
Q 020065 72 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSA 151 (331)
Q Consensus 72 ~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~ 151 (331)
.|+|.+++............... .+ ..........+++|+ |.||+..+++++|+++|+.
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~-----~~--------------~~~~~~~~~~~~~l~--v~nl~~~~~~~~l~~~f~~ 137 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVY-----VP--------------GVVSTVVPDSAHKLF--IGGLPNYLNDDQVKELLTS 137 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCC-----CT--------------TSSCCCSSCCCCEEE--EECCCTTCCHHHHHHHHHT
T ss_pred eEEEeCCCCCCCCCCCcCCCcCC-----CC--------------CCccCCCCCCCCEEE--EeCCCCCCCHHHHHHHHHH
Confidence 99999987543211110000000 00 000011123467788 8899999999999999999
Q ss_pred CCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 152 FGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 152 fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|++...
T Consensus 138 ~G~v~~~~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 195 (198)
T 2yh0_A 138 FGPLKAFNLVKDSATGLSKGY-AFCEYVDINVTDQAIAGLNGMQLGDK---KLLVQRASVGA 195 (198)
T ss_dssp BSCEEEEEEEECTTTCSEEEE-EEEEESSSSHHHHHHHHHTTCEETTE---ECEEEESCCCC
T ss_pred cCCccEEEEeecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECCCCC
Confidence 9999999988753 455 99999999999999999999999988 99999997654
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.6e-27 Score=200.05 Aligned_cols=149 Identities=9% Similarity=0.094 Sum_probs=126.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+++ +.+++||||+|.+.++|.+|++. +..+ .|+.|+|.+
T Consensus 9 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~---------~g~~i~v~~ 77 (167)
T 2cjk_A 9 GGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL---------DGKVIDPKR 77 (167)
T ss_dssp CSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE---------TTEECCCEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc---------CCeEccccc
Confidence 35688999999999999999999998876 34668999999999999999984 4555 799999988
Q ss_pred eccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE
Q 020065 78 SAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 78 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~ 157 (331)
+..+.... .+++|+ |.||+.++|+++|+++|+.||.|.+
T Consensus 78 ~~~~~~~~---------------------------------------~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~ 116 (167)
T 2cjk_A 78 AIPRDEQD---------------------------------------KTGKIF--VGGIGPDVRPKEFEEFFSQWGTIID 116 (167)
T ss_dssp CCCHHHHH---------------------------------------HCEEEE--EEEECTTCCHHHHHHHHHTTSCCSE
T ss_pred ccchhhcc---------------------------------------CCCeEE--ECCCCCCCCHHHHHHHHHhCccEEE
Confidence 76542111 145677 8899999999999999999999999
Q ss_pred EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 158 IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 158 v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
+++..++ +|+ |||+|.+.++|.+|++ +||..|.|+ .|+|+|++++
T Consensus 117 ~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~i~V~~a~pk 166 (167)
T 2cjk_A 117 AQLMLDKDTGQSRGF-GFVTYDSADAVDRVCQ-NKFIDFKDR---KIEIKRAEPR 166 (167)
T ss_dssp EECCCSSSSSTTSEE-EEEEESSHHHHHHHHH-CSEECSSSS---CEEEEECCCC
T ss_pred EEEEEcCCCCccceE-EEEEECCHHHHHHHHh-CCCEEeCCe---EEEEeecCCC
Confidence 9987643 455 9999999999999998 899999998 9999998754
No 16
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.95 E-value=8.6e-28 Score=203.54 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=126.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|+.||.|..+.+.. +.+++||||+|.+.++|.+|+ .|||..| .|+.|+|.++
T Consensus 19 ~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~~l~v~~~ 88 (175)
T 1fje_B 19 GNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV---------FGNEIKLEKP 88 (175)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE---------TTEEEEEECC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe---------CCeEEEEecC
Confidence 35688999999999999999876632222 456789999999999999999 5999988 7999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 158 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v 158 (331)
..+.... ...+++|+ |.||+.++|+++|+++|+.||.|..+
T Consensus 89 ~~~~~~~-------------------------------------~~~~~~l~--v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 89 KGRDSKK-------------------------------------VRAARTLL--AKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp CCSSCST-------------------------------------TGGGGEEE--EESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred CCccccc-------------------------------------cccCCEEE--EeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 7543211 01256777 88999999999999999999999877
Q ss_pred EEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 159 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 159 ~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
.....++|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++.+
T Consensus 130 ~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~a~~k 174 (175)
T 1fje_B 130 SQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYTGEK 174 (175)
T ss_dssp CSSSSCCSE-EEEECSSHHHHHHHHHHHTEEEETTE---EEEEEECSSC
T ss_pred cCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEecCCC
Confidence 111234666 99999999999999999999999998 9999999754
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.1e-26 Score=212.17 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=134.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||.|.++.+++ +.++++|||+|.+.++|.+|++.|||..+ .|+.|+|.++
T Consensus 102 nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~---------~g~~i~v~~a 172 (284)
T 3smz_A 102 NLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL---------GPRTLYVHWT 172 (284)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CCcEEEEEEC
Confidence 5678999999999999999999998775 33567999999999999999999999987 8999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCC-CHHHHHHHHccCCCeeE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAV-TLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~v-t~~~L~~~Fs~fG~V~~ 157 (331)
..+..... ...+++|+ |.||+.++ |+++|+++|+.||.|.+
T Consensus 173 ~~~~~~~~------------------------------------~~~~~~l~--v~nlp~~~~~~~~l~~~f~~~G~i~~ 214 (284)
T 3smz_A 173 DAGQLTPA------------------------------------LLHSRCLC--VDRLPPGFNDVDALCRALSAVHSPTF 214 (284)
T ss_dssp CGGGCCTT------------------------------------TTSCSEEE--EECCCTTCCCHHHHHHHTCSSSCCSE
T ss_pred CCCCCCcc------------------------------------cCCccEEE--EecCCcccCCHHHHHHHhhCCCCeEE
Confidence 76533210 11356777 88999996 99999999999999999
Q ss_pred EEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCCc
Q 020065 158 IAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 209 (331)
Q Consensus 158 v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~~ 209 (331)
++|.++. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|+|++....
T Consensus 215 v~i~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~~~~~ 266 (284)
T 3smz_A 215 CQLACGQDGQLKGF-AVLEYETAEMAEEAQQQADGLSLGGS---HLRVSFCAPGPP 266 (284)
T ss_dssp EEEEECSSCCEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCSSSC
T ss_pred EEEEECCCCCcccE-EEEEeCCHHHHHHHHHHhCCCccCCe---EEEEEEecCCCc
Confidence 9988752 345 99999999999999999999999888 999999987654
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=5.1e-26 Score=205.68 Aligned_cols=146 Identities=19% Similarity=0.259 Sum_probs=125.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|+.||.|.+|.+.+ ++++|||+|.+.++|.+|++.|||..| .|+.|+|.++..
T Consensus 29 nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i---------~g~~l~v~~a~~-- 95 (261)
T 3sde_A 29 NLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTIL---------KSRPLRIRFATH-- 95 (261)
T ss_dssp SCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEECCC--
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEE---------CCceeEeeeccc--
Confidence 5688999999999999999999998875 567999999999999999999999988 899999998753
Q ss_pred ccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 162 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~ 162 (331)
+++|+ |.||+..+|+++|+++|+.||.|.+|+++.
T Consensus 96 -------------------------------------------~~~l~--v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~ 130 (261)
T 3sde_A 96 -------------------------------------------GAALT--VKNLSPVVSNELLEQAFSQFGPVEKAVVVV 130 (261)
T ss_dssp -------------------------------------------SSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred -------------------------------------------CCccc--ccCCCCCCCHHHHHHHHHhcCCeEEEEeee
Confidence 24466 899999999999999999999999999876
Q ss_pred cC----CCeeEEEEcCCHHHHHHHHHHhc-CCcccCCCceEEEEEeecCC
Q 020065 163 KN----GGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 163 ~~----~g~~afV~f~~~~~A~~Ai~~ln-g~~i~~~~~~~l~v~~ak~~ 207 (331)
+. +|+ |||+|.+.++|.+|++.|| |..+.+.....|+|++++..
T Consensus 131 ~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 131 DDRGRATGK-GFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp ETTSCEEEE-EEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCCCcCcE-EEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 53 455 9999999999999999995 44444221239999998754
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=5e-26 Score=208.47 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=129.9
Q ss_pred CCCCCCcHHHHHHhhcccC-ceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFG-FVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG-~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.|| .|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 124 nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 194 (292)
T 2ghp_A 124 NFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI---------EGYTLVTKVS 194 (292)
T ss_dssp CCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CCcEEEEEEC
Confidence 5678999999999999999 999998876 33678999999999999999999999988 7999999998
Q ss_pred ccccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCC-CCHHHHHHHHccCCCeeE
Q 020065 79 AHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQK 157 (331)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~-vt~~~L~~~Fs~fG~V~~ 157 (331)
..+...... + .....+++|+ |.||+.. +|+++|+++|+.||.|.+
T Consensus 195 ~~~~~~~~~------~--------------------------~~~~~~~~l~--v~nlp~~~~t~~~l~~~F~~~G~v~~ 240 (292)
T 2ghp_A 195 NPLEKSKRT------D--------------------------SATLEGREIM--IRNLSTELLDENLLRESFEGFGSIEK 240 (292)
T ss_dssp CCC-----------------------------------------CCTTTEEE--EEEECTTTCCHHHHHHHHGGGSCEEE
T ss_pred CCCcccccc------c--------------------------ccCCCCceEE--EECCCcccCCHHHHHHHHhccCCeeE
Confidence 754321110 0 0012367788 8899999 999999999999999999
Q ss_pred EEEEccC------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 158 IAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 158 v~i~~~~------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
|++.++. +|+ |||+|.+.++|.+|+ .|||..|.++ .|+|+|++.+
T Consensus 241 v~i~~~~~~tg~~~g~-afV~F~~~~~A~~A~-~l~g~~~~g~---~i~V~~a~~k 291 (292)
T 2ghp_A 241 INIPAGQKEHSFNNCC-AFMVFENKDSAERAL-QMNRSLLGNR---EISVSLADKK 291 (292)
T ss_dssp EECCSCCC---CCCEE-EEEEESSHHHHHHHG-GGTTEEETTE---EEEEEECCCC
T ss_pred EEEEecCCcCCCCceE-EEEEeCCHHHHHHHH-HhcCCEECCc---EEEEEEecCC
Confidence 9987643 455 999999999999999 9999999998 9999999764
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=4.7e-25 Score=201.24 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=126.8
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|+.|| |.++.+. +++++|||+|.+.++|.+|++.|||..+ .|+.|+|.++..
T Consensus 29 nLp~~~te~~l~~~F~~~G-i~~~~~~--~~~g~afV~f~~~~~A~~A~~~l~~~~~---------~g~~i~v~~~~~-- 94 (284)
T 3smz_A 29 GLPGDVTNQEVHDLLSDYE-LKYCFVD--KYKGTAFVTLLNGEQAEAAINAFHQSRL---------RERELSVQLQPT-- 94 (284)
T ss_dssp CCCTTCCHHHHHHHTTTSC-EEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEECCC--
T ss_pred CCCCCCCHHHHHHHHHHcC-CEEEEEe--cCCCEEEEEeCCHHHHHHHHHHcCCCee---------CCeEEEEEecCC--
Confidence 5688999999999999999 9888873 3667999999999999999999999988 799999987431
Q ss_pred ccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD 162 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~ 162 (331)
+++|+ |.||+.++|+++|+++|+.||.|.++++..
T Consensus 95 -------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~ 129 (284)
T 3smz_A 95 -------------------------------------------DALLC--VANLPPSLTQQQFEELVRPFGSLERCFLVY 129 (284)
T ss_dssp -------------------------------------------SCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred -------------------------------------------CCEEE--EcCCCCcCCHHHHHHHHHhcCCeeEEEEEe
Confidence 34566 899999999999999999999999998875
Q ss_pred cC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 163 KN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 163 ~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|++...
T Consensus 130 ~~~~g~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~a~~~~ 176 (284)
T 3smz_A 130 SERTGQSKGY-GFAEYMKKDSAARAKSDLLGKPLGPR---TLYVHWTDAGQ 176 (284)
T ss_dssp CTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEECCGGG
T ss_pred eCCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCC
Confidence 43 345 99999999999999999999999988 99999997654
No 21
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.93 E-value=2.9e-25 Score=177.68 Aligned_cols=102 Identities=43% Similarity=0.670 Sum_probs=96.2
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
+++++|+|+|+||++.+|+++|+++|++||.|++|+|++++ |++|||+|++.++|.+|++.|||..|+++ ||.|+|+|
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~~ 98 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIEY 98 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESS-SEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEEC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEEE
Confidence 46899999999999999999999999999999999998764 76699999999999999999999999997 77999999
Q ss_pred ecCCCcccccCCCCCCCCCCCCCC
Q 020065 204 SRHTDLSIKVNNDRSRDYTLPSTP 227 (331)
Q Consensus 204 ak~~~~~~~~~~~~~~~~~~~~~~ 227 (331)
|+...+.++++++++||||++.||
T Consensus 99 Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 99 ARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CSCSCCCCSSCSSSEEESSCCCCC
T ss_pred ecCCcceeecCCCCCCCCCCCCCC
Confidence 999999999999999999999887
No 22
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=8.9e-25 Score=200.14 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=125.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec--CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~--~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.++++|+++|+++|+.||+|.+|.+.+. .+++||||+|.+.++|.+|++ |||..+ .|+.|+|.++.
T Consensus 48 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~---------~g~~i~v~~~~- 116 (292)
T 2ghp_A 48 NLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVV---------GQNEIIVSHLT- 116 (292)
T ss_dssp EECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEE---------TTEECEEEECC-
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEe---------CCcEEEEEECC-
Confidence 35789999999999999999999988872 246899999999999999995 999887 89999998752
Q ss_pred ccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCC-CeeEEE
Q 020065 81 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIA 159 (331)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG-~V~~v~ 159 (331)
+++|+ |.||+..+++++|+++|+.|| .|.+|+
T Consensus 117 ---------------------------------------------~~~l~--v~nlp~~~t~~~l~~~f~~~G~~i~~v~ 149 (292)
T 2ghp_A 117 ---------------------------------------------ECTLW--MTNFPPSYTQRNIRDLLQDINVVALSIR 149 (292)
T ss_dssp ---------------------------------------------SCEEE--EECCCTTCCHHHHHHHHHHTTCCCCEEE
T ss_pred ---------------------------------------------CCEEE--EECCCCCCCHHHHHHHHHHhCCCeEEEE
Confidence 34566 889999999999999999999 999999
Q ss_pred EEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 160 MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 160 i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
+.+. ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|++...
T Consensus 150 i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~ 198 (292)
T 2ghp_A 150 LPSLRFNTSRRF-AYIDVTSKEDARYCVEKLNGLKIEGY---TLVTKVSNPLE 198 (292)
T ss_dssp CC-------CCE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECCCC-
T ss_pred EEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEECCCCc
Confidence 8763 3566 99999999999999999999999988 99999987554
No 23
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.92 E-value=7.4e-25 Score=182.61 Aligned_cols=112 Identities=51% Similarity=0.771 Sum_probs=98.0
Q ss_pred CCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 123 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 123 ~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
.++++++.|+|+||++.+|+++|+++|++||.|++|+|++++.+.+|||+|.+.++|.+|++.|||..|+++ ||+|+|+
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V~ 119 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRID 119 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEEE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEEE
Confidence 456889999999999999999999999999999999998765333499999999999999999999999885 6799999
Q ss_pred eecCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 020065 203 YSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 235 (331)
Q Consensus 203 ~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 235 (331)
|++.+++.++++++++|||+++.+|....+++.
T Consensus 120 ~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~~ 152 (164)
T 1sjr_A 120 FSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 152 (164)
T ss_dssp ECSSSSCCCCCCSSSEEESSCSCCCCCC-----
T ss_pred EecCCcccccccCCCCccccCCCCCCCCCCCCc
Confidence 999999999999999999999998876655443
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.4e-21 Score=161.80 Aligned_cols=138 Identities=15% Similarity=0.200 Sum_probs=109.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHHHh-CCCCcCcccCCCCCCCceEEEEeeccccccccccCccccCCCCCCCCCCCcccCc
Q 020065 31 KTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA 109 (331)
Q Consensus 31 ~~~~~~aFV~f~~~e~A~~Av~~l-ng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (331)
..-+|+++|+|.+.++|++|++.| ||..+ .| .|++.+++.+.............
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~---------~G-~~~~~~a~~~~~~~~~~~~~~~~--------------- 64 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGV---------DG-EWTYDDATKTFTVTEGSHHHHHH--------------- 64 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTC---------CC-EEEEETTTTEEEEECSSSSCCCC---------------
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCC---------CC-ceecccccCcccccccccccccc---------------
Confidence 345678999999999999999999 99988 67 99999887543221110000000
Q ss_pred cCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 110 SGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
........+++|| |+||+.++|+++|+++|+.||.|.+|++.++++|+ |||+|.+.++|.+|++.|||.
T Consensus 65 --------~~~~~~~~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 65 --------MHRDSCPLDCKVY--VGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGF-AFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp --------SCSSSSTTSCEEE--EESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSE-EEEEESSHHHHHHHHHHHSSS
T ss_pred --------ccccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcE-EEEEECCHHHHHHHHHHcCCC
Confidence 0001122467888 88999999999999999999999999999887787 999999999999999999999
Q ss_pred cccCCCceEEEEEeecCC
Q 020065 190 CIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 190 ~i~~~~~~~l~v~~ak~~ 207 (331)
.|.++ .|+|+|++..
T Consensus 134 ~~~g~---~l~v~~a~~~ 148 (150)
T 2i2y_A 134 TLCGC---RVRVELSNGE 148 (150)
T ss_dssp CSSSS---CCEEEECCCC
T ss_pred EECCe---EEEEEEcCCC
Confidence 99998 9999998754
No 25
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.85 E-value=2.1e-21 Score=156.02 Aligned_cols=95 Identities=44% Similarity=0.649 Sum_probs=85.3
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+|++|+|+|+++|++||+|.+|+++++.++++|||+|.+.++|.+|++.|||+.|+ .++|+|+|+||+.++
T Consensus 35 NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~-------g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 35 NLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLRIDFSKLTS 107 (130)
T ss_dssp SCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEE-------TTEEEEEEEECSCSS
T ss_pred CCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeec-------CCCcEEEEEecCCCc
Confidence 5679999999999999999999999888665555999999999999999999999995 223899999999999
Q ss_pred ccccccCccccCCCCCCCCCCC
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAP 104 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~ 104 (331)
+.++++++++|||+++.||..+
T Consensus 108 l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 108 LNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp CCCCCCSSSEEETTCTTCCSSC
T ss_pred eeEEecCCCcccCCCCCCCCCC
Confidence 9999999999999999987644
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.5e-20 Score=155.44 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=100.7
Q ss_pred EeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccccccccCccccCCCCCCCCCCCccc
Q 020065 28 TFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAI 107 (331)
Q Consensus 28 ~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 107 (331)
+..++.+|||||+|.+.++|++|++.+++... .+..+.+................ .
T Consensus 7 ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~------------- 62 (158)
T 2kn4_A 7 LNGKTLKGETTTEAVDAATAEKVFKQYANDNG---------VDGEWTYDDATKTFTVTEGSHHH--H------------- 62 (158)
T ss_dssp EECSSCEEEEEEECSSHHHHHHHHHHHHHHHT---------CCCEEEEETTTTEEEEECCCCCS--S-------------
T ss_pred ecCccccchhHHHHHHHHhHHHHHHhhcccCC---------CCCcccccCcccccccccccccc--c-------------
Confidence 33355778999999999999999999887543 22223332211110000000000 0
Q ss_pred CccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHH
Q 020065 108 DASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVA 182 (331)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~A 182 (331)
........++|| |+||+.++|+++|+++|+.||.|.+|+|..+ ++|+ |||+|.+.++|.+|
T Consensus 63 -----------~~~~~~~~~~l~--v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A 128 (158)
T 2kn4_A 63 -----------HHMDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDA 128 (158)
T ss_dssp -----------CCCCCCBCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCE-EEEEESBHHHHHHH
T ss_pred -----------cccCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceE-EEEEECCHHHHHHH
Confidence 000112356777 8899999999999999999999999998764 3566 99999999999999
Q ss_pred HHHhcCCcccCCCceEEEEEeecCCC
Q 020065 183 KEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 183 i~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
++.|||..|.++ .|+|+|++...
T Consensus 129 ~~~l~g~~~~g~---~l~v~~a~~~~ 151 (158)
T 2kn4_A 129 MDAMDGAVLDGR---ELRVQMARYGR 151 (158)
T ss_dssp HHHSTTEESSSS---EEEEEEECCSS
T ss_pred HHHhCCCEECCe---EEEEEECCCCC
Confidence 999999999998 99999998654
No 27
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.81 E-value=5.8e-20 Score=153.04 Aligned_cols=95 Identities=44% Similarity=0.649 Sum_probs=86.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+|++|+++|+++|++||+|.+|+++++++++||||+|.+.++|.+|++.|||+.|+ .++|+|+|+||+.++
T Consensus 53 NL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-------g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 53 NLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY-------NACCTLRIDFSKLTS 125 (164)
T ss_dssp SCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSS-------SSCSCEEEEECSSSS
T ss_pred CcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCcEEEEEEecCCc
Confidence 5689999999999999999999999987767789999999999999999999999984 235999999999999
Q ss_pred ccccccCccccCCCCCCCCCCC
Q 020065 83 LSVKFQSHRSRDYTNPYLPVAP 104 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~ 104 (331)
+.+++++.++|||+++.++...
T Consensus 126 l~vk~nn~rsrDyt~p~lp~~~ 147 (164)
T 1sjr_A 126 LNVKYNNDKSRDYTRPDLPSGD 147 (164)
T ss_dssp CCCCCCSSSEEESSCSCCCCCC
T ss_pred ccccccCCCCccccCCCCCCCC
Confidence 9999999999999999887655
No 28
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.4e-19 Score=143.28 Aligned_cols=91 Identities=38% Similarity=0.572 Sum_probs=80.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+|++|+++|+++|++||+|.+|+++++ ++++|||+|.+.++|.+|++.|||..|+ .++++|+|+||+.+.
T Consensus 32 NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~-------g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 32 NPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIY-------AGCCTLKIEYARPTR 103 (124)
T ss_dssp SCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCB-------TTBSEEEEECCSCSC
T ss_pred CcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEec-------CCCeEEEEEEecCCc
Confidence 56899999999999999999999998875 3435999999999999999999999984 123799999999999
Q ss_pred ccccccCccccCCCCCCCC
Q 020065 83 LSVKFQSHRSRDYTNPYLP 101 (331)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~ 101 (331)
+.+++++.++|||+++.++
T Consensus 104 l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 104 LNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CCCSSCSSSEEESSCCCCC
T ss_pred ceeecCCCCCCCCCCCCCC
Confidence 9999999999999998775
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=1.6e-18 Score=136.99 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=63.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.++++|+++|+++|++||.|.+|.+++ +.+++||||+|.+.++|.+||+.|||..| .|+.|+|.+++.
T Consensus 12 nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~---------~g~~i~V~~a~~ 82 (115)
T 4f25_A 12 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL---------NDRKVFVGRFKS 82 (115)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECEEEESSC
T ss_pred CCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEECCC
Confidence 5689999999999999999999998876 33467999999999999999999999988 899999999875
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
+
T Consensus 83 ~ 83 (115)
T 4f25_A 83 R 83 (115)
T ss_dssp C
T ss_pred c
Confidence 4
No 30
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=6.7e-18 Score=129.42 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=71.5
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCc--ccCCCceEEEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 201 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~--i~~~~~~~l~v 201 (331)
+++++|+ |+||++++|+++|+++|++||.|++|++++.+ |+ |||+|++.++|.+|++.|||.. |.|+ +|+|
T Consensus 19 ~ps~~l~--V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i~V 91 (100)
T 3r27_A 19 PASPVVH--IRGLIDGVVEADLVEALQEFGPISYVVVMPKK-RQ-ALVEFEDVLGACNAVNYAADNQIYIAGH---PAFV 91 (100)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCEEETTE---EEEE
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhcCCCceeCCc---EEEE
Confidence 4688998 89999999999999999999999999998755 55 9999999999999999999987 6687 9999
Q ss_pred EeecCCCc
Q 020065 202 SYSRHTDL 209 (331)
Q Consensus 202 ~~ak~~~~ 209 (331)
+||+.+.+
T Consensus 92 ~~S~~k~l 99 (100)
T 3r27_A 92 NYSTSQKI 99 (100)
T ss_dssp EECSCSCC
T ss_pred Eecccccc
Confidence 99987764
No 31
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=130.29 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=66.7
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+++.++++|+++|+++|++||.|.+|++++ .+++|||+|.+.++|.+||+.|||..+. +.|++|+|+||++
T Consensus 26 V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~-------i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 26 IRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIY-------IAGHPAFVNYSTS 96 (100)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEE-------ETTEEEEEEECSC
T ss_pred EeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCce-------eCCcEEEEEeccc
Confidence 367899999999999999999999999886 4579999999999999999999998742 3899999999998
Q ss_pred ccc
Q 020065 81 TDL 83 (331)
Q Consensus 81 ~~l 83 (331)
++|
T Consensus 97 k~l 99 (100)
T 3r27_A 97 QKI 99 (100)
T ss_dssp SCC
T ss_pred ccc
Confidence 876
No 32
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=127.16 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=68.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
++.|| |+||+.++|+++|+++|+.||.|.+|++.+++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 19 gt~lf--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~gr---~l~ 92 (99)
T 4fxv_A 19 GTNLI--VNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGY-GFVNYVTAKDAERAINTLNGLRLQSK---TIK 92 (99)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccccc-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 56777 89999999999999999999999999987643 355 99999999999999999999999998 999
Q ss_pred EEeecC
Q 020065 201 ISYSRH 206 (331)
Q Consensus 201 v~~ak~ 206 (331)
|+||++
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999975
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=127.66 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=71.8
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcC--CcccCCCceEEEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHI 201 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng--~~i~~~~~~~l~v 201 (331)
.++++|| |+||++++|+++|+++|++||.|++|+|++++ |+ |||+|++.++|.+|++.|++ ..|.|+ +|+|
T Consensus 14 ~~~~~Lf--V~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k-Gf-aFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V 86 (105)
T 1sjq_A 14 VPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI 86 (105)
T ss_dssp CCCCEEE--ECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTSCCEETTE---ECCB
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 3477888 89999999999999999999999999999874 65 99999999999999999874 678888 9999
Q ss_pred EeecCCCccc
Q 020065 202 SYSRHTDLSI 211 (331)
Q Consensus 202 ~~ak~~~~~~ 211 (331)
+||+.+.+..
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998776553
No 34
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=6.4e-17 Score=125.46 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCc--ccCCCceEEEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 201 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~--i~~~~~~~l~v 201 (331)
.++++|| |.||++.+++++|+++|++||.|.+|+|.+.+ |+ |||+|++.++|.+|++.||+.. |.++ .|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~V 85 (104)
T 1wex_A 13 SVSPVVH--VRGLCESVVEADLVEALEKFGTICYVMMMPFK-RQ-ALVEFENIDSAKECVTFAADVPVYIAGQ---QAFF 85 (104)
T ss_dssp CCCSEEE--EESCCSSCCHHHHHHHHTTTSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHHHSCCBSSSS---BCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 4578888 88999999999999999999999999998764 55 9999999999999999997654 8888 9999
Q ss_pred EeecCCCcc
Q 020065 202 SYSRHTDLS 210 (331)
Q Consensus 202 ~~ak~~~~~ 210 (331)
+|++.+...
T Consensus 86 ~~a~~~~~~ 94 (104)
T 1wex_A 86 NYSTSKRIT 94 (104)
T ss_dssp EECSSSSCC
T ss_pred EEccCcccc
Confidence 999876654
No 35
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.8e-17 Score=134.80 Aligned_cols=119 Identities=18% Similarity=0.273 Sum_probs=70.9
Q ss_pred ceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCcc
Q 020065 35 FQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLS 114 (331)
Q Consensus 35 ~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (331)
.++|++|+|...|.+|++.|+|... .|+. .+.++...
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~---------~g~~-~~~~~~~~--------------------------------- 41 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQ---------MGRG-SMSYGRPP--------------------------------- 41 (135)
T ss_dssp ----------------------------------------CCSCCSC---------------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCC---------CCCC-CCCcCCCC---------------------------------
Confidence 4689999999999999999998643 2221 11111100
Q ss_pred ccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 115 VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 115 ~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
.....+++|| |.||+.++|+++|+++|+.||.|++|+|..+ ++|+ |||+|.+.++|.+|++.|||.
T Consensus 42 ------~~~~~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~-afV~F~~~~~A~~Ai~~l~g~ 112 (135)
T 2lea_A 42 ------PDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGF-AFVRFHDKRDAEDAMDAMDGA 112 (135)
T ss_dssp ------SSGGGCCCEE--EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSC-CEEECSCHHHHHHHHTTTTTC
T ss_pred ------CCCCCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCC
Confidence 0011256777 8899999999999999999999999998754 2566 999999999999999999999
Q ss_pred cccCCCceEEEEEeecCCC
Q 020065 190 CIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 190 ~i~~~~~~~l~v~~ak~~~ 208 (331)
.|.++ .|+|+|++...
T Consensus 113 ~i~g~---~l~V~~a~~~~ 128 (135)
T 2lea_A 113 VLDGR---ELRVQMARYGR 128 (135)
T ss_dssp CSSSS---CCEEEECCCCC
T ss_pred EECCE---EEEEEECCCCC
Confidence 99998 99999997654
No 36
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=126.50 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=71.9
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcC--CcccCCCceEEEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLHI 201 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng--~~i~~~~~~~l~v 201 (331)
.++++|| |+||++++|+++|+++|+.||.|++|+|++++ |+ |||+|++.++|.+|++.||+ ..|.|+ +|+|
T Consensus 29 ~ps~~Lf--VgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k-G~-AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l~V 101 (119)
T 2ad9_A 29 VPSRVIH--IRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK-NQ-AFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI 101 (119)
T ss_dssp SCCSEEE--EESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG-TE-EEEECSCHHHHHHHHHHHHHHCCCBTTB---CCEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-CE-EEEEECCHHHHHHHHHHhccCCceECCe---EEEE
Confidence 3578888 88999999999999999999999999999874 55 99999999999999999984 678888 9999
Q ss_pred EeecCCCcc
Q 020065 202 SYSRHTDLS 210 (331)
Q Consensus 202 ~~ak~~~~~ 210 (331)
+||+.+.+.
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999877655
No 37
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.69 E-value=6.1e-17 Score=127.84 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=69.8
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
+..|| |+||+.++|+++|+++|+.||.|++|+|++++ +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 5 ~~~lf--V~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~-afV~f~~~~~A~~Ai~~l~~~~~~g~---~i~V~ 78 (115)
T 4f25_A 5 SGNIF--IKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-GFVHFETQEAAERAIEKMNGMLLNDR---KVFVG 78 (115)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCEEE--ECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCce-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 45677 99999999999999999999999999987654 455 99999999999999999999999998 99999
Q ss_pred eecCCCcc
Q 020065 203 YSRHTDLS 210 (331)
Q Consensus 203 ~ak~~~~~ 210 (331)
+++....+
T Consensus 79 ~a~~~~~~ 86 (115)
T 4f25_A 79 RFKSRKER 86 (115)
T ss_dssp ESSCCCC-
T ss_pred ECCCcccc
Confidence 98765443
No 38
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.68 E-value=5.9e-17 Score=120.27 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=67.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
+.-|+ |+||++.+|+++|+++|++||+|.++++.. ++|| |||+|.+.++|.+|++.|||..++++ +|+|+++.
T Consensus 7 ~~wL~--VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGf-aFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLL--LKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGI-ALCKYTTREEANKAQMALNNCVLANT---TIFAESPS 79 (89)
T ss_dssp CCEEE--EECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCC
T ss_pred cceEE--EeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcE-EEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECC
Confidence 34455 999999999999999999999999999877 4577 99999999999999999999999999 99999984
Q ss_pred C
Q 020065 206 H 206 (331)
Q Consensus 206 ~ 206 (331)
.
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 3
No 39
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=121.21 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=71.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhc--CCcccCCCceEEEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHI 201 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ln--g~~i~~~~~~~l~v 201 (331)
.++++|| |+||++.+|+++|+++|+.||.|++|++.++ +|+ |||+|++.++|.+|++.|+ +..|.|+ .|+|
T Consensus 13 ~p~~~l~--V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 85 (101)
T 2cq1_A 13 APSRVLH--IRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQ-AFLELATEEAAITMVNYYSAVTPHLRNQ---PIYI 85 (101)
T ss_dssp SCCSEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTE-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCE-EEEEECCHHHHHHHHHHhccCCceECCc---EEEE
Confidence 4578888 8899999999999999999999999999887 455 9999999999999999875 6678888 9999
Q ss_pred EeecCCCcc
Q 020065 202 SYSRHTDLS 210 (331)
Q Consensus 202 ~~ak~~~~~ 210 (331)
+|++.+.+.
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876654
No 40
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=122.90 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=71.7
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
++.++|| |.||++++|+++|+++|++||.|++|+|+.+. +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 4 ~p~~~lf--V~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~-aFV~f~~~~~A~~Ai~~lng~~~~gr---~ 77 (110)
T 3s8s_A 4 IPLKEVT--FARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGL-ARVLFTSTRGAKETVKNLHLTSVMGN---I 77 (110)
T ss_dssp SCCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCcEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3567888 88999999999999999999999999987543 466 99999999999999999999999998 9
Q ss_pred EEEEeecCCCcc
Q 020065 199 LHISYSRHTDLS 210 (331)
Q Consensus 199 l~v~~ak~~~~~ 210 (331)
|+|++++....+
T Consensus 78 i~V~~a~~~~~~ 89 (110)
T 3s8s_A 78 IHAQLDIKGQQR 89 (110)
T ss_dssp CEEEECSTTHHH
T ss_pred EEEEECCCCcHH
Confidence 999999765433
No 41
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9.4e-17 Score=124.20 Aligned_cols=74 Identities=16% Similarity=0.172 Sum_probs=65.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC--CCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG--RSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng--~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++||++|+++|++||+|.+|.+++ .++||||+|.+.++|.+|++.|++ ..| .|++|+|+|++
T Consensus 22 ~nLp~~vte~dL~~lF~~fG~V~~v~i~~--~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l---------~Gr~l~V~~A~ 90 (105)
T 1sjq_A 22 RKLPIDVTEGEVISLGLPFGKVTNLLMLK--GKNQAFIEMNTEEAANTMVNYYTSVTPVL---------RGQPIYIQFSN 90 (105)
T ss_dssp CSCCTTSCHHHHHHHHHHHCCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTSCCEE---------TTEECCBCCCS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhccCCceE---------CCEEEEEEEcC
Confidence 46789999999999999999999999987 367999999999999999999875 455 89999999999
Q ss_pred ccccccc
Q 020065 80 HTDLSVK 86 (331)
Q Consensus 80 ~~~l~~~ 86 (331)
.+++...
T Consensus 91 ~~~~~~~ 97 (105)
T 1sjq_A 91 HKELKTD 97 (105)
T ss_dssp SSSCCCT
T ss_pred CCCCCcc
Confidence 8766543
No 42
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=122.44 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCcEEEEEeccCCC-CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCc--ccCCCceEEEE
Q 020065 125 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~-~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~--i~~~~~~~l~v 201 (331)
++++|| |+||++ ++|+++|+++|+.||.|.+|+|++.+ |+ |||+|++.++|.+|++.||+.. |.|+ +|+|
T Consensus 14 p~~~l~--V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 86 (102)
T 1x4d_A 14 TRRVVH--IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NE-AFIEMATTEDAQAAVDYYTTTPALVFGK---PVRV 86 (102)
T ss_dssp CCCEEE--EESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SC-EEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred CCCEEE--EeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CE-EEEEECCHHHHHHHHHHHcCCCceECCc---EEEE
Confidence 578888 899999 99999999999999999999998765 55 9999999999999999999754 8888 9999
Q ss_pred EeecCC
Q 020065 202 SYSRHT 207 (331)
Q Consensus 202 ~~ak~~ 207 (331)
+||+..
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999743
No 43
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.2e-16 Score=118.64 Aligned_cols=69 Identities=13% Similarity=0.106 Sum_probs=63.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++||++|++||++||+|.++.+.. ++|||||+|.+.++|++|++.|||..+ .|++|+|++++..+
T Consensus 14 NL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l---------~gr~I~V~~A~e~~ 82 (89)
T 2wbr_A 14 NLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVL---------ANTTIFAESPSENE 82 (89)
T ss_dssp CCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEECCCHHH
T ss_pred CCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEE---------CCcEEEEEECCHHH
Confidence 5688999999999999999999999876 678999999999999999999999988 89999999996443
No 44
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=2.3e-16 Score=132.53 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=70.8
Q ss_pred EEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccccccccccCccccCCCCCCCCCCCcccCccCCccccCC
Q 020065 39 VQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLD 118 (331)
Q Consensus 39 V~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (331)
.+|.+.++|..|+..|++...- ..|+.++...+...... .+....+.+ .. .. ..
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~-------~kgr~~~~~~~~~~~~~-~~~~~~~s~---~~---~~------------~~ 64 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKH-------RKGRGFGSDSNTREAIH-SYERVRNED---DD---EL------------EP 64 (165)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhccccccccchhhcccccc-------ccCCCCCCCcccccccc-CccccccCC---CC---CC------------CC
Confidence 7999999999999999987652 24666665554322110 000000000 00 00 00
Q ss_pred CCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccC
Q 020065 119 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYD 193 (331)
Q Consensus 119 ~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~ 193 (331)
......++++|| |.||+..+|+++|+++|+.||.|..|.|.... +|+ |||+|.+.++|.+||+.|||..|.+
T Consensus 65 ~~~~~~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 65 GPQRSVEGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp -CCCCC-CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCEEE--EeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 001122466777 88999999999999999999999999998652 455 9999999999999999999999999
Q ss_pred CCceEEEEEeecCCCc
Q 020065 194 GGFCKLHISYSRHTDL 209 (331)
Q Consensus 194 ~~~~~l~v~~ak~~~~ 209 (331)
+ .|+|.|++....
T Consensus 142 ~---~l~V~~a~~~~~ 154 (165)
T 1rk8_A 142 Q---TIQVDWCFVKGP 154 (165)
T ss_dssp E---ECEEEESEECC-
T ss_pred E---EEEEEEecCCCC
Confidence 8 999999976654
No 45
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.65 E-value=8.9e-16 Score=118.53 Aligned_cols=77 Identities=25% Similarity=0.486 Sum_probs=69.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
++++|| |.||+.++|+++|+++|+.||.|++|++.+ ++ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 10 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~---~~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 80 (103)
T 2dgu_A 10 KVKVLF--VRNLANTVTEEILEKAFSQFGKLERVKKLK---DY-AFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVFA 80 (103)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHSCEEEEEECS---SC-EEEEESSHHHHHHHHHHHTTEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEC---CE-EEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEEc
Confidence 467788 889999999999999999999999999874 45 99999999999999999999999998 9999999
Q ss_pred cCCCcc
Q 020065 205 RHTDLS 210 (331)
Q Consensus 205 k~~~~~ 210 (331)
+.....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 866543
No 46
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.65 E-value=3.1e-16 Score=116.49 Aligned_cols=75 Identities=19% Similarity=0.391 Sum_probs=68.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|+ |.||+.++++++|+++|+.||.|.+|++..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 6 ~~~~l~--V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 79 (85)
T 3mdf_A 6 TKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---TI 79 (85)
T ss_dssp CSSEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 467888 8899999999999999999999999998654 3565 99999999999999999999999998 99
Q ss_pred EEEeec
Q 020065 200 HISYSR 205 (331)
Q Consensus 200 ~v~~ak 205 (331)
+|+|+|
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 47
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=121.66 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=62.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|++|+|+||
T Consensus 26 nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---------~gr~l~V~~A 96 (99)
T 4fxv_A 26 YLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL---------QSKTIKVSYA 96 (99)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEe
Confidence 5789999999999999999999998876 34567999999999999999999999988 8999999998
Q ss_pred cc
Q 020065 79 AH 80 (331)
Q Consensus 79 ~~ 80 (331)
+.
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 48
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.2e-16 Score=118.03 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=70.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCccc--CCCceEEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLHIS 202 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~--~~~~~~l~v~ 202 (331)
++++|| |.||+.++|+++|+++|++||.|++|++.+. +|+ |||+|.+.++|.+|++.|||..|. ++ .|+|+
T Consensus 16 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~-afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~V~ 88 (97)
T 1why_A 16 PTTRLW--VGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSF-AYIQYESLDAAQAACAKMRGFPLGGPDR---RLRVD 88 (97)
T ss_dssp CCSCEE--EECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCC-EEEEESSHHHHHHHHHHHTTCBCSSSSC---BCEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCE-EEEEECCHHHHHHHHHHHCCCEeCCCCc---EEEEE
Confidence 467888 8899999999999999999999999999876 455 999999999999999999999999 77 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
|++.+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 987653
No 49
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=118.82 Aligned_cols=75 Identities=9% Similarity=0.159 Sum_probs=69.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccC-----CCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD-----GGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~-----~~~~~l~ 200 (331)
.+.|| |.||+.++|+++|+++|+.||.|+.|+|..+ |+ |||+|.+.++|.+||+.|||..|.+ + .|+
T Consensus 15 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~i~ 86 (108)
T 1x4c_A 15 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---YIR 86 (108)
T ss_dssp CCEEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TE-EEEEESSHHHHHHHHHHSSSEEEECTTSCEE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CE-EEEEECCHHHHHHHHHHHCcCCccCCcCcce---EEE
Confidence 56777 8999999999999999999999999999887 65 9999999999999999999999998 7 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|++++...
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998654
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=117.63 Aligned_cols=79 Identities=19% Similarity=0.376 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc---CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~---~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
.+++|| |.||+..+++++|+++|+.||.|++|+|.++ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2cqi_A 14 QPRTLY--VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPY-CFVEFYEHRDAAAALAAMNGRKILGK---EVKV 87 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCE-EEEEESSHHHHHHHHHHHTTEEETTE---EEEE
T ss_pred CCCEEE--EeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCE-EEEEECCHHHHHHHHHHhCCCCcCCC---eEEE
Confidence 467888 8899999999999999999999999999874 3466 99999999999999999999999998 9999
Q ss_pred EeecCCCc
Q 020065 202 SYSRHTDL 209 (331)
Q Consensus 202 ~~ak~~~~ 209 (331)
+|++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987553
No 51
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=1.4e-16 Score=125.58 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=81.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++++|+++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.|++.
T Consensus 14 ~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~a~~ 84 (115)
T 3lqv_A 14 RNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV---------SNRYLVVLYYNA 84 (115)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS---------SSCBCEEEECCH
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEEecC
Confidence 35688999999999999999999998876 44578999999999999999999999988 899999999875
Q ss_pred ccccccccCccccCCCCCCCCCCCcccCccCCccccCCCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHccCCC
Q 020065 81 TDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGP 154 (331)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~ 154 (331)
+.. ..++....++++|.++|++||-
T Consensus 85 ~~~-------------------------------------------------~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRA-------------------------------------------------FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHH-------------------------------------------------TTTSCHHHHHHHHHHHHHHHCC
T ss_pred Chh-------------------------------------------------hhhhhHhHhHHHHHHHHHHhCC
Confidence 432 1345556789999999999984
No 52
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-15 Score=115.04 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=68.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
++++|| |.||+.++|+++|+++|+.||.|++|++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a 77 (90)
T 2dnq_A 7 GMVKLF--IGNLPREATEQEIRSLFEQYGKVLECDII---KNY-GFVHIEDKTAAEDAIRNLHHYKLHGV---NINVEAS 77 (90)
T ss_dssp CCEEEE--EESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTE-EEEEESSHHHHHHHHHHHTTCBCSSC---BCEEECS
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHhcCCccCCc---EEEEEEC
Confidence 467777 88999999999999999999999999988 355 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+...
T Consensus 78 ~~~~ 81 (90)
T 2dnq_A 78 KNKS 81 (90)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 53
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.64 E-value=6.3e-16 Score=117.78 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=71.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|| |+||+..+++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 2 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 75 (96)
T 2x1f_A 2 SRVVY--LGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGY-AFIEFRDLESSASAVRNLNGYQLGSR---FLK 75 (96)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CcEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 56788 88999999999999999999999999987642 566 99999999999999999999999998 999
Q ss_pred EEeecCCCcc
Q 020065 201 ISYSRHTDLS 210 (331)
Q Consensus 201 v~~ak~~~~~ 210 (331)
|+|++.....
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999876543
No 54
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=116.76 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=70.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |.||+.++|+++|+++|+.||.|.+|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 80 (99)
T 1whw_A 7 GSGRLF--VRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGF-AFVTFMFPEHAVKAYAEVDGQVFQGR---ML 80 (99)
T ss_dssp SCEEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSE-EEEEESSHHHHHHHHHHTTTEESSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeE-EEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 467788 88999999999999999999999999987643 466 99999999999999999999999998 99
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|++....
T Consensus 81 ~V~~a~~~~~ 90 (99)
T 1whw_A 81 HVLPSTIKKE 90 (99)
T ss_dssp EEEECCCCST
T ss_pred EEEEcCCCcc
Confidence 9999976653
No 55
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.1e-15 Score=116.30 Aligned_cols=79 Identities=16% Similarity=0.348 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
..++|| |.||+.++|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 87 (103)
T 2cq3_A 14 TPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV 87 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 467788 88999999999999999999999999998653 556 99999999999999999999999998 9999
Q ss_pred EeecCCCc
Q 020065 202 SYSRHTDL 209 (331)
Q Consensus 202 ~~ak~~~~ 209 (331)
+|++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cq3_A 88 NNATARVM 95 (103)
T ss_dssp EECCSSCC
T ss_pred EEcccCCC
Confidence 99986654
No 56
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=4.2e-16 Score=120.81 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=64.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
++.++++|+++|+++|++||.|.+|.+++ .++||||+|.+.++|.+|++.||+..+. +.|++|+|+|++.+
T Consensus 21 ~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 21 RGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVY-------IAGQQAFFNYSTSK 91 (104)
T ss_dssp ESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCB-------SSSSBCEEEECSSS
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCEEEEEEEccCc
Confidence 46789999999999999999999999887 4679999999999999999999876521 38999999999977
Q ss_pred ccc
Q 020065 82 DLS 84 (331)
Q Consensus 82 ~l~ 84 (331)
++.
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 57
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=122.53 Aligned_cols=78 Identities=9% Similarity=0.133 Sum_probs=68.7
Q ss_pred CCCcEEEEEeccCCCC-CCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcC--CcccCCCceEEE
Q 020065 124 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH 200 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~-vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng--~~i~~~~~~~l~ 200 (331)
.++++|| |+||+++ +|+++|+++|+.||.|.+|+|.+.+ |+ |||+|++.++|.+|++.||+ ..|.|+ +|+
T Consensus 23 ~p~~~l~--V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k-g~-aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l~ 95 (112)
T 1x4f_A 23 ELGRVIH--LSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK-SQ-AFIEMETREDAMAMVDHCLKKALWFQGR---CVK 95 (112)
T ss_dssp CCCCEEE--EESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT-TE-EEEECSSHHHHHHHHHHHHHSCCCSSSS---CCE
T ss_pred CCCCEEE--EeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC-CE-EEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence 3578888 8999998 9999999999999999999998754 55 99999999999999999875 458888 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+|++...
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99997544
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.64 E-value=6e-16 Score=115.44 Aligned_cols=76 Identities=11% Similarity=0.267 Sum_probs=67.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|+ |+||+.++++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 6 ~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 79 (87)
T 3bs9_A 6 HFHVF--VGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QIR 79 (87)
T ss_dssp CEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred ceEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---EEE
Confidence 56777 89999999999999999999999999987653 455 99999999999999999999999998 999
Q ss_pred EEeecCC
Q 020065 201 ISYSRHT 207 (331)
Q Consensus 201 v~~ak~~ 207 (331)
|+|++.+
T Consensus 80 v~~a~~k 86 (87)
T 3bs9_A 80 TNWATRK 86 (87)
T ss_dssp EEEEC--
T ss_pred EEecCCC
Confidence 9999754
No 59
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=123.49 Aligned_cols=74 Identities=16% Similarity=0.165 Sum_probs=65.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC--CCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG--RSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng--~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++||++|+++|++||.|.+|.+++. ++||||+|.+.++|.+|++.|++ ..| .|++|+|+||+
T Consensus 37 gNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l---------~Gr~l~V~~a~ 105 (119)
T 2ad9_A 37 RKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVL---------RGQPIYIQFSN 105 (119)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCB---------TTBCCEEEECS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceE---------CCeEEEEEEcc
Confidence 367899999999999999999999999874 57999999999999999999985 455 89999999999
Q ss_pred ccccccc
Q 020065 80 HTDLSVK 86 (331)
Q Consensus 80 ~~~l~~~ 86 (331)
.+++...
T Consensus 106 ~k~~~~~ 112 (119)
T 2ad9_A 106 HKELKTD 112 (119)
T ss_dssp SSSCCCC
T ss_pred CCCCCcc
Confidence 8877653
No 60
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=9.4e-16 Score=117.86 Aligned_cols=75 Identities=20% Similarity=0.372 Sum_probs=69.3
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCC
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~ 207 (331)
+|+ |+||+.++|+++|+++|+.||.|.+|++..+++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|++..
T Consensus 2 ~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVY--VGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGF-AFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGM 75 (101)
T ss_dssp EEE--EECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSE-EEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSC
T ss_pred EEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCE-EEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCC
Confidence 455 89999999999999999999999999998876676 99999999999999999999999998 9999999876
Q ss_pred C
Q 020065 208 D 208 (331)
Q Consensus 208 ~ 208 (331)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 61
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.3e-16 Score=118.65 Aligned_cols=80 Identities=18% Similarity=0.370 Sum_probs=71.5
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.++++|| |.||+..+|+++|+++|+.||.|++|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 10 ~~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 2cqb_A 10 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T 83 (102)
T ss_dssp CCCSCEE--EESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSE-EEECCSSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---E
Confidence 3467888 8899999999999999999999999998764 3566 99999999999999999999999998 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|+|++....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 IRVNLAKPMRI 94 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999976653
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=117.32 Aligned_cols=80 Identities=14% Similarity=0.391 Sum_probs=71.6
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.++++|| |.||+.++|+++|+++|+.||.|++|+|.++ ++|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 10 ~~~~~l~--v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 1x5s_A 10 SDEGKLF--VGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGF-GFVTFENIDDAKDAMMAMNGKSVDGR---Q 83 (102)
T ss_dssp CCCSEEE--EESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSE-EEEECSSHHHHHHHHHHHTTCCTTSC---C
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 3467888 8899999999999999999999999999764 3566 99999999999999999999999998 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|+|++....
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999986653
No 63
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.63 E-value=1.6e-15 Score=117.34 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.++++|| |.||+.++++++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++....|
T Consensus 13 ~~~~~l~--v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 13 GRDRKLF--VGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGC-AFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEE-EEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcE-EEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3477888 88999999999999999999999999998753 355 9999999999999999999999998211299
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|++....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999986653
No 64
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.5e-15 Score=116.41 Aligned_cols=78 Identities=17% Similarity=0.366 Sum_probs=70.8
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
.++++|| |.||+..+|+++|+++|+.||.|++|++.+.+ |+ |||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 13 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k-g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~ 85 (99)
T 2cpj_A 13 TQRSRLF--VGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK-GF-GFIRLETRTLAEIAKVELDNMPLRGK---QLRVRF 85 (99)
T ss_dssp CCTTEEE--EESCCTTCCHHHHHHHTSTTCCCSEEEEETTT-TE-EEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEE
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC-CE-EEEEECCHHHHHHHHHHhCCCEeCCc---eEEEEE
Confidence 3467888 88999999999999999999999999998764 55 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 87654
No 65
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-15 Score=113.62 Aligned_cols=77 Identities=16% Similarity=0.241 Sum_probs=65.6
Q ss_pred CCcEEEEEeccCCCCCCHHH----HHHHHccC-CCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDV----LHMVFSAF-GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~----L~~~Fs~f-G~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++.++ |||.||++.+++++ |+++|+.| |+|.+|. +|+ |||+|.+.++|.+|++.|||..|+++ .|
T Consensus 7 p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~-AfV~F~~~esA~~A~~~l~G~~l~gr---~i 76 (96)
T 2diu_A 7 GCHTL-LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCS-AILRFINQDSAERAQKRMENEDVFGN---RI 76 (96)
T ss_dssp CSSEE-EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTC-EEEEESSHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CcceE-EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCE-EEEEECCHHHHHHHHHHhcCCccCCc---eE
Confidence 45552 34999999999988 66899999 5999982 365 99999999999999999999999999 99
Q ss_pred EEEeecCCCccc
Q 020065 200 HISYSRHTDLSI 211 (331)
Q Consensus 200 ~v~~ak~~~~~~ 211 (331)
+|+||+..+..+
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999998776443
No 66
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=115.07 Aligned_cols=76 Identities=21% Similarity=0.438 Sum_probs=68.9
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
+++++|+ |.||+..+++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 14 ~~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 87 (94)
T 2e5h_A 14 PSKSTVY--VSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGV-AFILFLDKDSAQNCTRAINNKQLFGR---V 87 (94)
T ss_dssp CCTTSEE--EESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTC-EEEEESCHHHHHHHHHHTTTEEETTE---E
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccE-EEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 3467888 88999999999999999999999999987642 466 99999999999999999999999998 9
Q ss_pred EEEEeec
Q 020065 199 LHISYSR 205 (331)
Q Consensus 199 l~v~~ak 205 (331)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 67
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.1e-16 Score=120.94 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=62.8
Q ss_pred CCCCC-CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLS-LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~-~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++ ++||++|+++|++||+|.+|.+++ .++||||+|.+.++|.+||+.||+.... +.|++|+|+||+.
T Consensus 21 ~nLp~~~~te~dL~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 21 MDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPAL-------VFGKPVRVHLSQK 91 (102)
T ss_dssp ESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCE-------ETTEECEEEEECC
T ss_pred eCCCCCcCCHHHHHHHHHhcCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHHcCCCce-------ECCcEEEEEECCC
Confidence 46788 999999999999999999999987 3479999999999999999999976411 2899999999984
Q ss_pred -ccc
Q 020065 81 -TDL 83 (331)
Q Consensus 81 -~~l 83 (331)
+++
T Consensus 92 ~~~~ 95 (102)
T 1x4d_A 92 YKRI 95 (102)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 444
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=114.84 Aligned_cols=78 Identities=22% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|+ |.||+..+|+++|+++|+.||.|.+|++.++. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (95)
T 2dnz_A 4 GSSGLY--VGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGY-GFITFSDSECARRALEQLNGFELAGR---PM 77 (95)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHhCCCeeCCc---EE
Confidence 467788 88999999999999999999999999998753 466 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++.+.
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999987554
No 69
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.63 E-value=1.7e-16 Score=120.06 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=66.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCC-CeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhc-CCcccCCCceE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCK 198 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG-~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~ln-g~~i~~~~~~~ 198 (331)
|++|+ |.|||.++|+++|+++|+.|| .|.+|+|+++ ++|+ |||+|.+.++|.+|++.|+ +..|.|+ .
T Consensus 1 S~~i~--v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~-aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~ 74 (91)
T 2lxi_A 1 SNIVM--LRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGF-AFVEFSHLQDATRWMEANQHSLNILGQ---K 74 (91)
T ss_dssp CCEEE--EETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSE-EEEECSSHHHHHHHHHTTTTEEEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCce-EEEEecCHHHHHHHHHhcCCCeEECCE---E
Confidence 35677 899999999999999999999 8999988753 3566 9999999999999999885 5568888 9
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|+|+||+.+.
T Consensus 75 i~V~~a~~~~ 84 (91)
T 2lxi_A 75 VSMHYSDPKP 84 (91)
T ss_dssp EEEECCCSCC
T ss_pred EEEEEcCCCC
Confidence 9999997654
No 70
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-16 Score=124.19 Aligned_cols=81 Identities=26% Similarity=0.319 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHH----HHHccCCCeeEEEEEc--cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~----~~Fs~fG~V~~v~i~~--~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
++++|| |+||++.+++++|+ ++|++||.|++|.+.+ +++|+ |||+|.+.++|.+|++.|||..|.|+ .
T Consensus 28 p~~~Lf--V~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~-aFV~F~~~~~A~~Ai~~lng~~l~gr---~ 101 (127)
T 2a3j_A 28 PSQVVL--ITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGK-AYIVFATQESAQAFVEAFQGYPFQGN---P 101 (127)
T ss_dssp CCSEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCC-EEEEESSHHHHHHHHHHSTTCCCTTS---C
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCE-EEEEECCHHHHHHHHHHHCCCEeCCC---E
Confidence 477888 88999999999865 7999999999998865 34676 99999999999999999999999999 9
Q ss_pred EEEEeecCCCccc
Q 020065 199 LHISYSRHTDLSI 211 (331)
Q Consensus 199 l~v~~ak~~~~~~ 211 (331)
|+|+|++......
T Consensus 102 l~V~~a~~~~~~~ 114 (127)
T 2a3j_A 102 LVITFSETPQSQV 114 (127)
T ss_dssp CEEEECCCCCHHH
T ss_pred EEEEEccCcchhc
Confidence 9999998766444
No 71
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=8.7e-16 Score=118.35 Aligned_cols=73 Identities=19% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC--CCCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln--g~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++|+++|+++|++||.|.+|.+++. ++||||+|.+.++|.+|++.|+ +..| .|++|+|+|++
T Consensus 21 ~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~---------~Gr~l~V~~a~ 89 (101)
T 2cq1_A 21 RKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHL---------RNQPIYIQYSN 89 (101)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEE---------TTEECEEEECS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceE---------CCcEEEEEEcC
Confidence 467899999999999999999999988873 6799999999999999999886 4455 89999999999
Q ss_pred cccccc
Q 020065 80 HTDLSV 85 (331)
Q Consensus 80 ~~~l~~ 85 (331)
.+++..
T Consensus 90 ~~~~~~ 95 (101)
T 2cq1_A 90 HKELKT 95 (101)
T ss_dssp CSSCCC
T ss_pred cccCcC
Confidence 877654
No 72
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=9.5e-16 Score=133.35 Aligned_cols=79 Identities=20% Similarity=0.398 Sum_probs=73.3
Q ss_pred CCcEEEEEeccCC-CCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 125 ESNVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 125 ~~~~l~v~v~nl~-~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
++++|| |+||+ ..+|+++|+++|+.||.|.+|+|+++++|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|
T Consensus 3 ~~~~l~--V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~---~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLM--VYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGA-AMVEMADGYAVDRAITHLNNNFMFGQ---KMNVCV 76 (205)
T ss_dssp CCSEEE--EECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTC-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCEEE--EeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCE-EEEEECCHHHHHHHHHHhCCCEECCc---eEEEEE
Confidence 477888 88999 899999999999999999999999888887 99999999999999999999999998 999999
Q ss_pred ecCCCc
Q 020065 204 SRHTDL 209 (331)
Q Consensus 204 ak~~~~ 209 (331)
++....
T Consensus 77 s~~~~~ 82 (205)
T 3tyt_A 77 SKQPAI 82 (205)
T ss_dssp CSCSCC
T ss_pred ccCCcc
Confidence 986553
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.5e-15 Score=114.23 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |.||+..+++++|+++|+.||.|++|+|..+ ++|+ |||+|.+.++|.+|++ |||..|.++ .|
T Consensus 9 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~-~~~~~~~g~---~l 81 (99)
T 2dgs_A 9 KSNKIF--VGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGF-GFITFEDEQSVDQAVN-MHFHDIMGK---KV 81 (99)
T ss_dssp SCCEEE--EESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSE-EEEEESSHHHHHHHHH-HCCCBSSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCce-EEEEECCHHHHHHHHH-hCCCEECCe---EE
Confidence 467888 8899999999999999999999999999764 3566 9999999999999999 999999998 99
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|++....
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999976553
No 74
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=116.81 Aligned_cols=78 Identities=19% Similarity=0.396 Sum_probs=70.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC------CCeeEEEEcCCHHHHHHHHHHh-cCCcccCCCce
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFC 197 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~------~g~~afV~f~~~~~A~~Ai~~l-ng~~i~~~~~~ 197 (331)
.+++|| |.||+..+|+++|+++|+.||.|++|+|.++. +|+ |||+|.+.++|.+|++.| ||..|.++
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~~g~--- 87 (107)
T 2cph_A 14 TTSKIL--VRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGF-GFVDFITKQDAKKAFNALCHSTHLYGR--- 87 (107)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSE-EEEEESSHHHHHHHHHHHHTCCBSSSC---
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCce-EEEEECCHHHHHHHHHHhccCCeECCC---
Confidence 467788 88999999999999999999999999997762 566 999999999999999999 99999998
Q ss_pred EEEEEeecCCC
Q 020065 198 KLHISYSRHTD 208 (331)
Q Consensus 198 ~l~v~~ak~~~ 208 (331)
.|+|+|++...
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 99999997654
No 75
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.62 E-value=1.3e-15 Score=112.55 Aligned_cols=75 Identities=15% Similarity=0.273 Sum_probs=67.2
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
+|+ |+||+.++++++|+++|+.||.|.++++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 3 ~l~--V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~ 76 (83)
T 3md1_A 3 NLF--VGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGY-GFVSFTSQDDAQNAMDSMQGQDLNGR---PLRIN 76 (83)
T ss_dssp EEE--EECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred EEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccce-EEEEECCHHHHHHHHHHhcCCeeCCc---EEEEE
Confidence 455 99999999999999999999999999987552 455 99999999999999999999999988 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
|++.+.
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 997643
No 76
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.62 E-value=3.2e-15 Score=117.64 Aligned_cols=79 Identities=10% Similarity=0.254 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |.||+..+|+++|+++|+.||.|++|+|.++. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (115)
T 2dgo_A 14 NHFHVF--VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGY-GFVSFFNKWDAENAIQQMGGQWLGGR---QI 87 (115)
T ss_dssp TCEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 466777 88999999999999999999999999998653 355 99999999999999999999999998 99
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|++....
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999986653
No 77
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=116.19 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=69.4
Q ss_pred CcEEEEEeccCCCCCCHHHHH----HHHccCCCeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 126 SNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~----~~Fs~fG~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++.|| |+||+..+++++|+ ++|++||.|.+|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 9 ~~~l~--V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~-afV~f~~~~~A~~Ai~~l~g~~~~gr---~l 82 (96)
T 2dgx_A 9 GADVQ--VSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLK-AVVQMENLQDAIGAVNSLHRYKIGSK---KI 82 (96)
T ss_dssp CEEEE--EESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCC-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 45677 89999999999999 999999999999998543 566 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999987554
No 78
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=3.8e-15 Score=117.72 Aligned_cols=78 Identities=17% Similarity=0.405 Sum_probs=70.6
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
+++|| |+||+.++|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 7 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~V 80 (116)
T 2fy1_A 7 PGKLF--IGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGF-AFITFENPADAKNAAKDMNGKSLHGK---AIKV 80 (116)
T ss_dssp CCEEE--EECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCE-EEEECSSHHHHHHHHHHCSSCBCSSS---BCEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 56777 88999999999999999999999999998754 456 99999999999999999999999998 9999
Q ss_pred EeecCCCc
Q 020065 202 SYSRHTDL 209 (331)
Q Consensus 202 ~~ak~~~~ 209 (331)
+|++....
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99986553
No 79
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.62 E-value=9.2e-16 Score=116.88 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=65.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCC--eeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCc----ccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHC----IYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~--V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~----i~~~ 194 (331)
=.+|| |.||+.++|+++|+++|++||. |.+|++.++ ++|+ |||+|.+.++|.+|++.|||.. |.|+
T Consensus 9 m~tlf--V~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~-aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 9 MDTII--LRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGF-AFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSE-EEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred cCEEE--EeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceE-eEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 35677 9999999999999999999995 678887653 3577 9999999999999999999974 7888
Q ss_pred CceEEEEEeecC
Q 020065 195 GFCKLHISYSRH 206 (331)
Q Consensus 195 ~~~~l~v~~ak~ 206 (331)
.|+|+|||.
T Consensus 86 ---~i~V~~Aks 94 (95)
T 2lkz_A 86 ---TIGVDFAKS 94 (95)
T ss_dssp ---EEEEEECCC
T ss_pred ---EEEEEEccC
Confidence 999999974
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=118.50 Aligned_cols=78 Identities=17% Similarity=0.348 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
.+++|| |+||+.++|+++|+++|+.||.|++|++..+. +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 28 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V 101 (109)
T 2err_A 28 QPKRLH--VSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGF-GFVTFENSADADRAREKLHGTVVEGR---KIEV 101 (109)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTE-EEEECCCSHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEE--EECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence 467788 88999999999999999999999999997653 566 99999999999999999999999998 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
+|++.+.
T Consensus 102 ~~a~~~~ 108 (109)
T 2err_A 102 NNATARV 108 (109)
T ss_dssp EECCCSC
T ss_pred EECCCCc
Confidence 9998654
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.9e-15 Score=116.82 Aligned_cols=78 Identities=15% Similarity=0.281 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC--CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~--~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
.+++|| |.||+.++|+++|+++|+.||.|++|+|.... +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 21 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~ 94 (109)
T 1x4a_A 21 NDCRIY--VGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPF-AFVEFEDPRDAEDAVYGRDGYDYDGY---RLRVE 94 (109)
T ss_dssp CSSEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCC-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 467888 88999999999999999999999999986543 566 99999999999999999999999988 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
|++...
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 987544
No 82
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=115.63 Aligned_cols=78 Identities=22% Similarity=0.396 Sum_probs=70.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.+++|+ |.||+.++|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 16 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 89 (100)
T 2do4_A 16 EKHKLF--ISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGL-AYVEYENESQASQAVMKMDGMTIKEN---IIK 89 (100)
T ss_dssp CCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeE-EEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 466788 88999999999999999999999999988654 355 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+|++...
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99987654
No 83
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.7e-15 Score=118.14 Aligned_cols=76 Identities=21% Similarity=0.494 Sum_probs=69.7
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
..+++|| |+||+.++|+++|+++|+.||.|.+|++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 29 ~~~~~l~--V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~ 99 (108)
T 2jvo_A 29 LSNTRLF--VRPFPLDVQESELNEIFGPFGPMKEVKIL---NGF-AFVEFEEAESAAKAIEEVHGKSFANQ---PLEVVY 99 (108)
T ss_dssp CSCSEEE--ECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEES
T ss_pred CCCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 3467888 89999999999999999999999999988 465 99999999999999999999999888 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 100 a~~~~ 104 (108)
T 2jvo_A 100 SKLPA 104 (108)
T ss_dssp CSCCC
T ss_pred ecCCC
Confidence 97654
No 84
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.4e-15 Score=113.00 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=68.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHh-cCCcccCCCceEEEEEe
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHISY 203 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~l-ng~~i~~~~~~~l~v~~ 203 (331)
.+++|+ |+||+.++++++|+++|+.||.|.+|++.+.+ |+ |||+|.+.++|.+|++.| ||..+.++ .|+|+|
T Consensus 11 ~~~~l~--V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k-g~-afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~~ 83 (85)
T 2ytc_A 11 TITTLY--VGGLGDTITETDLRNHFYQFGEIRTITVVQRQ-QC-AFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVKW 83 (85)
T ss_dssp SCCCEE--EECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHTTTTTCEETTE---ECCEEE
T ss_pred CccEEE--EcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC-CE-EEEEECCHHHHHHHHHHhcCCeeECCC---EEEEEe
Confidence 467788 88999999999999999999999999999865 55 999999999999999999 99999998 999999
Q ss_pred ec
Q 020065 204 SR 205 (331)
Q Consensus 204 ak 205 (331)
+|
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 85
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=115.76 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=70.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEE-EEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v-~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
++++|| |.||+.++|+++|+++|+.||.|.++ +|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 77 (96)
T 1x5t_A 4 GSSGIF--IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGY-AFINFASFDASDAAIEAMNGQYLCNR---P 77 (96)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSE-EEEEBSSHHHHHHHHHTTTTCEETTE---E
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 467788 88999999999999999999999999 88764 2566 99999999999999999999999998 9
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|+|+|++...
T Consensus 78 l~v~~a~~~~ 87 (96)
T 1x5t_A 78 ITVSYAFKKD 87 (96)
T ss_dssp CEEEESCCCC
T ss_pred EEEEEecccC
Confidence 9999997655
No 86
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=116.41 Aligned_cols=79 Identities=15% Similarity=0.324 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc---CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~---~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
++++|| |.||+..+|+++|+++|+.||.|.+|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2d9p_A 14 QVVNLY--VKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGF-GFVCFSSPEEATKAVTEMNGRIVATK---PLYV 87 (103)
T ss_dssp SCCCEE--EECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence 466777 8899999999999999999999999998864 2455 99999999999999999999999998 9999
Q ss_pred EeecCCCc
Q 020065 202 SYSRHTDL 209 (331)
Q Consensus 202 ~~ak~~~~ 209 (331)
+|++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99986653
No 87
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.7e-15 Score=114.72 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCCcEEEEEeccCCC-CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 124 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~-~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
+++++|| |+||+. ++++++|+++|+.||.|.+|++. +|+ |||+|.+.++|.+|++.|||..+.|+ .|+|+
T Consensus 20 ~~~~~l~--V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIEXESQEMNFGK---KLILE 90 (97)
T ss_dssp CTTCEEE--EESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSE-EEEEESSHHHHHHHHHHHTTSEETTE---ECEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 4577888 889998 99999999999999999999884 466 99999999999999999999999998 99999
Q ss_pred eecCC
Q 020065 203 YSRHT 207 (331)
Q Consensus 203 ~ak~~ 207 (331)
|++..
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98754
No 88
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.61 E-value=8.4e-16 Score=120.38 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=64.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+++ +++++||||+|.+.++|.+||+.|||+.| .|+.|+|.+
T Consensus 12 ~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~---------~gr~i~V~~ 82 (110)
T 3s8s_A 12 ARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV---------MGNIIHAQL 82 (110)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEE
T ss_pred ECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEE
Confidence 46789999999999999999999998876 34578999999999999999999999998 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
+...+
T Consensus 83 a~~~~ 87 (110)
T 3s8s_A 83 DIKGQ 87 (110)
T ss_dssp CSTTH
T ss_pred CCCCc
Confidence 97553
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.61 E-value=1.7e-15 Score=114.24 Aligned_cols=78 Identities=15% Similarity=0.287 Sum_probs=70.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC---CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~---~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
++++|+ |.||+.++++++|+++|+.||.|.+|++.++. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~-afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v 80 (92)
T 2dgv_A 7 GACQIF--VRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGC-GVVKFESPEVAERACRMMNGMKLSGR---EIDV 80 (92)
T ss_dssp SCCEEE--ECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEE-EEEEESSHHHHHHHHHHHTTCCBTTB---CCCC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence 467788 89999999999999999999999999988643 455 99999999999999999999999998 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
+|++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9987654
No 90
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=115.16 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=68.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|+ |.||+..+++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 87 (95)
T 2cqc_A 14 PNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---RI 87 (95)
T ss_dssp GGGCEE--EESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEE-EEEEESSHHHHHHHHHHHTTEEETTE---EE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccE-EEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 467788 88999999999999999999999999987543 345 99999999999999999999999998 99
Q ss_pred EEEeecC
Q 020065 200 HISYSRH 206 (331)
Q Consensus 200 ~v~~ak~ 206 (331)
+|+|++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999874
No 91
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-15 Score=115.28 Aligned_cols=79 Identities=14% Similarity=0.251 Sum_probs=71.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |.||+.++|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (105)
T 1x5u_A 14 QDATVY--VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY-GFVEFLSEEDADYAIKIMDMIKLYGK---PI 87 (105)
T ss_dssp TTTEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSC-EEEEESSHHHHHHHHHHSSSCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence 467888 88999999999999999999999999987643 466 99999999999999999999999998 99
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|++....
T Consensus 88 ~v~~a~~~~~ 97 (105)
T 1x5u_A 88 RVNKASAHNK 97 (105)
T ss_dssp EEEETTTTSC
T ss_pred EEEECCCCCc
Confidence 9999976653
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.61 E-value=2.6e-15 Score=118.21 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=70.6
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
..+++|| |.||+.++++++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 23 ~~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 96 (115)
T 2cpz_A 23 PEGANLF--IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCF-GFVSYDNPVSAQAAIQSMNGFQIGMK---R 96 (115)
T ss_dssp STTCCEE--EESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCcc-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3467788 88999999999999999999999999987654 345 99999999999999999999999998 9
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|+|+|++.+.
T Consensus 97 l~V~~a~~~~ 106 (115)
T 2cpz_A 97 LKVQLKRSKN 106 (115)
T ss_dssp CEEECCCCSC
T ss_pred EEEEEcCCCC
Confidence 9999987654
No 93
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=116.03 Aligned_cols=78 Identities=27% Similarity=0.453 Sum_probs=69.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC--------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 196 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~--------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~ 196 (331)
++++|| |.||+.++|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 4 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~-- 78 (98)
T 2cpf_A 4 GSSGLF--IKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGF-GFVEYKKPEQAQKALKQLQGHTVDGH-- 78 (98)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEE-EEEEESSHHHHHHHHHHSTTCEETTE--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccE-EEEEECCHHHHHHHHHHhCCCeeCCe--
Confidence 467788 88999999999999999999999999987532 355 99999999999999999999999998
Q ss_pred eEEEEEeecCCC
Q 020065 197 CKLHISYSRHTD 208 (331)
Q Consensus 197 ~~l~v~~ak~~~ 208 (331)
.|+|+|++...
T Consensus 79 -~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 -KLEVRISERAT 89 (98)
T ss_dssp -ECEEECSSCSS
T ss_pred -EEEEEEccCCC
Confidence 99999987654
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.2e-15 Score=117.19 Aligned_cols=75 Identities=20% Similarity=0.272 Sum_probs=68.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |+||+.++++++|+++|+.||.|.+|++.+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 26 ~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a 98 (101)
T 2la4_A 26 RVTTAY--IGNIPHFATEADLIPLFQNFGFILDFKHYPE-KGC-CFIKYDTHEQAAVCIVALANFPFQGR---NLRTGWG 98 (101)
T ss_dssp SCCEEE--EESCCTTCCHHHHHHHHHTTSCCSEEEEETT-TTE-EEEECSSHHHHHHHHHHHTTCEETTE---ECCCCBC
T ss_pred CCCEEE--EcCCCcccCHHHHHHHHHhCCCEEEEEEecC-CCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEec
Confidence 367788 8999999999999999999999999999854 455 99999999999999999999999998 9999998
Q ss_pred cC
Q 020065 205 RH 206 (331)
Q Consensus 205 k~ 206 (331)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=112.74 Aligned_cols=76 Identities=20% Similarity=0.286 Sum_probs=68.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc------CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~------~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
+++|+ |.||+.++|+++|+++|+.||.|.++++..+ ++|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 4 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (88)
T 4a8x_A 4 PTKVH--IGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGY-AYVEFENPDEAEKALKHMDGGQIDGQ---EI 77 (88)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcE-EEEEEecHHHHHHHHHHcCCCeECCe---EE
Confidence 56777 8899999999999999999999999988543 4566 99999999999999999999999998 99
Q ss_pred EEEeecCC
Q 020065 200 HISYSRHT 207 (331)
Q Consensus 200 ~v~~ak~~ 207 (331)
+|++++..
T Consensus 78 ~v~~a~~~ 85 (88)
T 4a8x_A 78 TATAVLAP 85 (88)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99998654
No 96
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.6e-15 Score=112.60 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |.||+.++|+++|+++|+.||.|.+|++.+. +|||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 9 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a 79 (92)
T 2dgt_A 9 ASTKLH--VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQLS 79 (92)
T ss_dssp SSEEEE--EESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEEc
Confidence 467777 8999999999999999999999999998853 499999999999999999999999998 9999998
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+...
T Consensus 80 ~~~~ 83 (92)
T 2dgt_A 80 TSRL 83 (92)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7554
No 97
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=116.40 Aligned_cols=78 Identities=17% Similarity=0.324 Sum_probs=70.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |.||+..+++++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 87 (103)
T 2cq0_A 14 DNATIR--VTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGF-AFISFHRREDAARAIAGVSGFGYDHL---IL 87 (103)
T ss_dssp SSEEEE--EESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeE-EEEEECCHHHHHHHHHHcCCCeeCCc---EE
Confidence 467787 88999999999999999999999999987653 345 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 98
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.61 E-value=1.9e-15 Score=119.50 Aligned_cols=76 Identities=22% Similarity=0.344 Sum_probs=68.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
..+++|| |.||+.++++++|+++|++||.|++|+|.+++ +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 38 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~ 111 (118)
T 2khc_A 38 PEGCNLF--IYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCF-GFVSFDNPDSAQVAIKAMNGFQVGTK---R 111 (118)
T ss_dssp CCSEEEE--EECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCE-EEEEEESSHHHHHHHHHCCCCEETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcE-EEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3467777 88999999999999999999999999997542 566 99999999999999999999999998 9
Q ss_pred EEEEeec
Q 020065 199 LHISYSR 205 (331)
Q Consensus 199 l~v~~ak 205 (331)
|+|+|+|
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999985
No 99
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.9e-15 Score=118.46 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=69.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
+++|| |.||+..+|+++|+++|++||.|.+|.|.+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 10 ~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~ 82 (111)
T 1whx_A 10 KTVIL--AKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-GIT-AIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAP 82 (111)
T ss_dssp EEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCSS-SSC-EEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCE-EEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEECC
Confidence 56777 8999999999999999999999999988764 455 99999999999999999999999998 99999997
Q ss_pred CCCc
Q 020065 206 HTDL 209 (331)
Q Consensus 206 ~~~~ 209 (331)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 6543
No 100
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=114.76 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=68.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.+++|+ |.||+..+++++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 15 ~~~~l~--v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 88 (95)
T 2ywk_A 15 ADRTVF--VGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSF-GFVCFKHPESVSYAIALLNGIRLYGR---PIN 88 (95)
T ss_dssp GGGEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSTHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceE-EEEEECCHHHHHHHHHHhCCCEECCC---EEE
Confidence 467888 88999999999999999999999999998754 345 99999999999999999999999998 999
Q ss_pred EEeecC
Q 020065 201 ISYSRH 206 (331)
Q Consensus 201 v~~ak~ 206 (331)
|+|++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999863
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.1e-15 Score=115.38 Aligned_cols=78 Identities=23% Similarity=0.395 Sum_probs=70.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |.||+.++|+++|+++|+.||.|++|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 85 (103)
T 2dnm_A 12 GMITLK--VDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGF-AFVRFHDRRDAQDAEAAMDGAELDGR---EL 85 (103)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSC-EEEEESSSSHHHHHHHHHSSCCBTTB---CC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 467788 8899999999999999999999999998754 2466 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999997654
No 102
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.7e-15 Score=116.22 Aligned_cols=77 Identities=16% Similarity=0.356 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |+||+..+|+++|+++|+.||.|.+|+|..++ |+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 24 ~~~~l~--V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 96 (109)
T 1x4g_A 24 KNCTVY--CGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK-GY-SFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWG 96 (109)
T ss_dssp SCCEEE--EECCSSCCCHHHHHHHHHHHSCEEEEEEETTT-TE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEECC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC-CE-EEEEECCHHHHHHHHHHcCCCEECCc---EEEEEec
Confidence 367788 89999999999999999999999999999874 55 99999999999999999999999998 9999999
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+...
T Consensus 97 ~~~~ 100 (109)
T 1x4g_A 97 KESP 100 (109)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 103
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.1e-15 Score=113.98 Aligned_cols=75 Identities=23% Similarity=0.335 Sum_probs=68.6
Q ss_pred CCcEEEEEeccCCC-CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 125 ESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 125 ~~~~l~v~v~nl~~-~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
++++|| |+||+. .+|+++|+++|+.||.|.+|++. +|+ |||+|.+.++|.+|++.|||..+.++ .|+|+|
T Consensus 9 ~~~~l~--V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~ 79 (96)
T 2kvi_A 9 PKSRLF--IGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAF-GFIQFDNPQSVRDAIECESQEMNFGK---KLILEV 79 (96)
T ss_dssp CCEEEE--EESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTE-EEEEESCHHHHHHHHHHHTCSSCBTT---TBCEEE
T ss_pred CCCEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCE-EEEEECCHHHHHHHHHHcCCCeeCCc---EEEEEE
Confidence 477888 889998 99999999999999999999985 465 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 80 a~~~~ 84 (96)
T 2kvi_A 80 SSSNA 84 (96)
T ss_dssp EECCC
T ss_pred cCcCC
Confidence 97654
No 104
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=7.7e-15 Score=115.18 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=70.2
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.++++|| |.||+..+++++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 13 ~~~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 86 (114)
T 2do0_A 13 RLGSTVF--VANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGI-GTVTFEQSIEAVQAISMFNGQLLFDR---PM 86 (114)
T ss_dssp CCCSCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEeCCC---EE
Confidence 3467888 88999999999999999999999999987753 345 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999987543
No 105
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=1.2e-15 Score=119.53 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=69.4
Q ss_pred CcEEEEEeccCCCCCCHHHHH---HHHccCCCeeEEEEEccC--------CCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLH---MVFSAFGPVQKIAMFDKN--------GGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~---~~Fs~fG~V~~v~i~~~~--------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
.++|| |.||+.++++++|+ ++|++||.|++|+|.++. +|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 15 ~~~l~--V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 15 KNLVF--VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS-AYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp SSCEE--EEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEE-EEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeE-EEEEECcHHHHHHHHHHhCCCEECCE
Confidence 56777 89999999999999 999999999999997643 256 99999999999999999999999998
Q ss_pred CceEEEEEeecCCC
Q 020065 195 GFCKLHISYSRHTD 208 (331)
Q Consensus 195 ~~~~l~v~~ak~~~ 208 (331)
.|+|+|++.+.
T Consensus 92 ---~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 ---TLKASLGTTKY 102 (111)
T ss_dssp ---EEEEESCCCCS
T ss_pred ---EEEEEeccccc
Confidence 99999987654
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.60 E-value=3.9e-15 Score=114.03 Aligned_cols=75 Identities=17% Similarity=0.406 Sum_probs=67.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE--------EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI 191 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~--------v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i 191 (331)
+.++|+ |+||+.++|+++|+++|+.||.|.+ |++..++ +|+ |||+|.+.++|.+|++.|||..|
T Consensus 12 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~-afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 12 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCSEEE--EECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEE-EEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeE-EEEEECCHHHHHHHHHHhCCCEe
Confidence 467788 8999999999999999999999999 8887643 455 99999999999999999999999
Q ss_pred cCCCceEEEEEeec
Q 020065 192 YDGGFCKLHISYSR 205 (331)
Q Consensus 192 ~~~~~~~l~v~~ak 205 (331)
.++ .|+|+||+
T Consensus 89 ~g~---~l~V~~A~ 99 (99)
T 2la6_A 89 SGN---PIKVSFAT 99 (99)
T ss_dssp SSS---BCEEEECC
T ss_pred CCc---EEEEEecC
Confidence 998 99999975
No 107
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.60 E-value=1.7e-15 Score=115.47 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=71.6
Q ss_pred CCCcEEEEEeccCCCCCCHHHHH----HHHccCCCeeEEEEEc--cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 124 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~----~~Fs~fG~V~~v~i~~--~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
.++++|+ |+||+.++++++|+ ++|+.||.|.+|++.+ .++|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 6 ~~~~~l~--V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~--- 79 (97)
T 1nu4_A 6 RPNHTIY--INNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK--- 79 (97)
T ss_dssp CCCSEEE--EESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTC-EEEEESSHHHHHHHHHHHTTCEETTE---
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcE-EEEEeCCHHHHHHHHHHhCCCEECCc---
Confidence 3577888 88999999999999 9999999999999874 23566 99999999999999999999999988
Q ss_pred EEEEEeecCCCcc
Q 020065 198 KLHISYSRHTDLS 210 (331)
Q Consensus 198 ~l~v~~ak~~~~~ 210 (331)
.|+|+|++.....
T Consensus 80 ~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 80 PMRIQYAKTDSDI 92 (97)
T ss_dssp ECEEEECSSCCTH
T ss_pred EEEEEEccCCCcc
Confidence 9999999876543
No 108
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.9e-15 Score=111.43 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=68.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |.||+.++|+++|+++|+.||.|.+|++.++ + |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 8 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 78 (90)
T 2dnp_A 8 NTWKIF--VGNVSAACTSQELRSLFERRGRVIECDVVKD---Y-AFVHMEKEADAKAAIAQLNGKEVKGK---RINVELS 78 (90)
T ss_dssp CSCCEE--EESCCTTCCHHHHHHHHHHHSCEEEEEECSS---C-EEEEESCHHHHHHHHHHHTTCEETTE---ECEEEES
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHcCCCEEEEEEECC---E-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 466788 8899999999999999999999999998853 4 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+...
T Consensus 79 ~~~~ 82 (90)
T 2dnp_A 79 TKGQ 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 109
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=7.2e-15 Score=114.73 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=70.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhc------CCcccC
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIYD 193 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~ln------g~~i~~ 193 (331)
++++|| |.||+.++|+++|+++|+.||.|.+|+|..+ ++|+ |||+|.+.++|.+|++.|| |..|.+
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 14 EGKTVF--IRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGC-AFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSE-EEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccE-EEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 467788 8899999999999999999999999998754 3566 9999999999999999999 999999
Q ss_pred CCceEEEEEeecCCCc
Q 020065 194 GGFCKLHISYSRHTDL 209 (331)
Q Consensus 194 ~~~~~l~v~~ak~~~~ 209 (331)
+ .|+|+|++....
T Consensus 91 ~---~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 R---QLKVDLAVTRDE 103 (111)
T ss_dssp C---EEEEECCCCCCC
T ss_pred E---EEEEEECCCCcc
Confidence 8 999999976543
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.59 E-value=3.9e-15 Score=115.32 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=69.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcc---cCCCc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGF 196 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i---~~~~~ 196 (331)
.+++|| |.||+.++|+++|+++|+.||.|++|+|..+ ++|+ |||+|.+.++|.+|++.|||..+ .++
T Consensus 12 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~~~~g~-- 86 (106)
T 2dgp_A 12 DAIKLF--IGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGC-AFLTYCERESALKAQSALHEQKTLPGMNR-- 86 (106)
T ss_dssp TCEEEE--EESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSE-EEEEESSHHHHHHHHHHHTTTCCCTTCSS--
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHhcCCcccCCCCc--
Confidence 466777 8899999999999999999999999998764 3566 99999999999999999999987 666
Q ss_pred eEEEEEeecCCC
Q 020065 197 CKLHISYSRHTD 208 (331)
Q Consensus 197 ~~l~v~~ak~~~ 208 (331)
.|+|+|++...
T Consensus 87 -~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 -PIQVKPADSES 97 (106)
T ss_dssp -CCEEEECCCCS
T ss_pred -eEEEEECCccc
Confidence 99999987654
No 111
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.59 E-value=4.6e-16 Score=150.07 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=70.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
+.++|| |+||+..||+++|.++|+.||.|+.|.|+.. ++|+ |||+|.+.++|.+||+.|||..|.++ .|
T Consensus 101 ~~~~lf--V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~-aFV~F~~~e~A~~Ai~~lng~~i~gr---~i 174 (437)
T 3pgw_S 101 AFKTLF--VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGY-AFIEYEHERDMHSAYKHADGKKIDGR---RV 174 (437)
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccce-EEEeeccHHHHHHHHHHcCCCEECCE---EE
Confidence 356777 8999999999999999999999999998754 2566 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|.|++...
T Consensus 175 ~V~~a~~~~ 183 (437)
T 3pgw_S 175 LVDVERGRT 183 (437)
T ss_pred EEEEeCCCC
Confidence 999998554
No 112
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2e-15 Score=118.36 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=67.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcc---cCCCceEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGFCKLHI 201 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i---~~~~~~~l~v 201 (331)
++++|||..+||++++|+++|+++|++||.|.+|+|... +|| |||+|.+.++|.+|++.|||..| .++ ...|.|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~l~v 100 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITLYL 100 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSC-EEEEESSHHHHHHHHHHTTTCEEECTTSC-EEECEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCE-EEEEECCHHHHHHHHHHhCCCEEccccCC-CcEEEE
Confidence 477888332779999999999999999999999988765 566 99999999999999999999987 222 249999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
.|++...
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 9987443
No 113
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=115.43 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=69.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |+||+..+++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 22 ~~~~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 95 (106)
T 1p27_B 22 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 95 (106)
T ss_dssp TBEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEE-EEEEESCHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeE-EEEEECCHHHHHHHHHHhcCCEECCc---EE
Confidence 356777 88999999999999999999999999987543 355 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++.+.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999987543
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.59 E-value=2.1e-15 Score=118.24 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=67.8
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCC-CeeEEEEE-ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG-~V~~v~i~-~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
...|+ |+||++++|+++|+++|+.|| .|..++|. ++++|+ |||+|.+.++|.+|++.|||..|.++ .|+|++
T Consensus 28 ~~~l~--VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGf-aFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~~ 101 (111)
T 2jvr_A 28 RYRIT--MKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT-GALEFPSEEILVEALERLNNIEFRGS---VITVER 101 (111)
T ss_dssp CEEEE--EECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCC-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEEE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 44566 999999999999999999999 99999986 456777 99999999999999999999999998 999999
Q ss_pred ecCC
Q 020065 204 SRHT 207 (331)
Q Consensus 204 ak~~ 207 (331)
++..
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8643
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=8.4e-16 Score=120.37 Aligned_cols=71 Identities=10% Similarity=0.090 Sum_probs=61.5
Q ss_pred CCCCCC-CcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSL-LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~-vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.+++ +|+++|+++|++||+|.+|.+++ +++||||+|.+.++|.+||+.||+.... +.|++|+|+|++.
T Consensus 31 ~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~-------l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 31 SNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALW-------FQGRCVKVDLSEK 101 (112)
T ss_dssp ESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCC-------SSSSCCEEEEECS
T ss_pred eCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCce-------ECCEEEEEEECcc
Confidence 467888 99999999999999999999986 5679999999999999999999764321 2899999999985
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
+
T Consensus 102 ~ 102 (112)
T 1x4f_A 102 Y 102 (112)
T ss_dssp C
T ss_pred c
Confidence 4
No 116
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.59 E-value=4e-15 Score=119.00 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=70.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |.||+..+|+++|+++|+.||.|.+|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 21 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 94 (126)
T 3ex7_B 21 EGWILF--VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGY-TLVEYETYKEAQAAMEGLNGQDLMGQ---PI 94 (126)
T ss_dssp SSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSC-EEEEESSHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 466777 88999999999999999999999999987553 566 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999997554
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.59 E-value=5.3e-15 Score=115.36 Aligned_cols=77 Identities=21% Similarity=0.402 Sum_probs=69.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |+||+..+++++|+++|+.||.|.+|++.++. +|+ |||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 25 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~F~~~~~A~~Ai~~l~g~~i~g~---~l 98 (108)
T 2jrs_A 25 GPMRLY--VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGY-GFITFSDSECAKKALEQLNGFELAGR---PM 98 (108)
T ss_dssp SCEEEE--EECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEE-EEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 467777 88999999999999999999999999987642 355 99999999999999999999999998 99
Q ss_pred EEEeecCC
Q 020065 200 HISYSRHT 207 (331)
Q Consensus 200 ~v~~ak~~ 207 (331)
+|+|++.+
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99998765
No 118
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=4.1e-15 Score=116.06 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |+||+..+|+++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 25 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 98 (110)
T 1oo0_B 25 EGWILF--VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGY-ALVEYETHKQALAAKEALNGAEIMGQ---TI 98 (110)
T ss_dssp TBEEEE--EESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 466777 88999999999999999999999999987543 466 99999999999999999999999988 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999997654
No 119
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=116.05 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=64.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||+|.+|.+.+. ++++|||+|.+.++|.+|++.|||..+ .|+.|+|.+++.+
T Consensus 6 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 6 GNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVI---------CGSRVRVELSTGM 75 (101)
T ss_dssp ECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCS---------SSCCCEEEESSSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeE---------CCcEEEEEEccCC
Confidence 356789999999999999999999998876 567999999999999999999999987 8999999999866
Q ss_pred c
Q 020065 82 D 82 (331)
Q Consensus 82 ~ 82 (331)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 120
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=114.41 Aligned_cols=78 Identities=12% Similarity=0.329 Sum_probs=69.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCee-EEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~-~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
++++|| |+||+.++++++|+++|+.||.|. +|+|.+++ +|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 81 (99)
T 2div_A 8 MAASLW--MGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGY-CFVEFADLATAEKCLHKINGKPLPGA---T 81 (99)
T ss_dssp SSSEEE--ECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEE-EEEECSCHHHHHHHHHTTTTSEESSC---S
T ss_pred CccEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCE-EEEEeCCHHHHHHHHHHHcCCccCCC---C
Confidence 477888 999999999999999999999999 99987653 355 99999999999999999999999998 7
Q ss_pred ----EEEEeecCCC
Q 020065 199 ----LHISYSRHTD 208 (331)
Q Consensus 199 ----l~v~~ak~~~ 208 (331)
|+|+|++...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999987543
No 121
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.58 E-value=4.1e-15 Score=119.76 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=70.6
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.++++|| |.||+.++|+++|+++|+.||.|++|+|..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 44 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~lng~~i~g~---~ 117 (129)
T 2kxn_B 44 DPNCCLG--VFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGF-AFVYFENVDDAKEAKERANGMELDGR---R 117 (129)
T ss_dssp CCSSCBC--EETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCE-EEEEESCHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 3467788 8899999999999999999999999999754 3566 99999999999999999999999998 9
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|+|+|++.+.
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999987654
No 122
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=118.12 Aligned_cols=78 Identities=17% Similarity=0.353 Sum_probs=70.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..++|| |+||+.++|+++|+++|+.||.|++|+|.+++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 41 ~~~~l~--V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l 114 (139)
T 1u6f_A 41 VLRNLM--VNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGY-GFVKFQSGSSAQQAIAGLNGFNILNK---RL 114 (139)
T ss_dssp TTSEEE--EESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEE-EEEEESSHHHHHHHHHHTTTEECSSC---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 467888 88999999999999999999999999987643 455 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 123
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=115.29 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=61.4
Q ss_pred CCCCCCcHHHHHHhhcccCc--eeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGF--VHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~--V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.++++|+|+|+++|++||. |.+|++.+ +++++||||+|.+.++|.+|++.|||.... ..+.||+|+|+
T Consensus 16 nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~-----~~i~Gr~i~V~ 90 (95)
T 2lkz_A 16 NIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPP-----LKIDGKTIGVD 90 (95)
T ss_dssp SCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSC-----EEETTEEEEEE
T ss_pred CCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCC-----ceECCEEEEEE
Confidence 56899999999999999995 56887765 456789999999999999999999997521 01389999999
Q ss_pred eecc
Q 020065 77 YSAH 80 (331)
Q Consensus 77 ~s~~ 80 (331)
||+.
T Consensus 91 ~Aks 94 (95)
T 2lkz_A 91 FAKS 94 (95)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9874
No 124
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.1e-15 Score=111.84 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE-ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~-~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
.+++|| |+||+..+|+++|+++|+.||.|. +++. ..++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 18 ~~~~l~--V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~ 90 (97)
T 2e5j_A 18 LAADVY--VGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRR-AFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVAL 90 (97)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTE-EEEECSSHHHHHHHHHHHTTCCSSSS---CCEEEE
T ss_pred CCCEEE--EeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcE-EEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 367777 889999999999999999999996 4444 345676 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87543
No 125
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=1.4e-14 Score=115.59 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=70.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.+++|| |.||+..+++++|+++|+.||.|++|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 34 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 107 (124)
T 2kt5_A 34 TGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PMD 107 (124)
T ss_dssp SCEEEE--EESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSE-EEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeE-EEEEECCHHHHHHHHHHcCCCEECCc---EEE
Confidence 466777 8899999999999999999999999999875 3566 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+||+...
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 99997654
No 126
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.58 E-value=6.9e-15 Score=114.14 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=67.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
++++|+ |.||+..+|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 28 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 101 (107)
T 3ulh_A 28 TGGKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGT-ADVHFERKADALKAMKQYNGVPLDGR---PMN 101 (107)
T ss_dssp CSEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EEE
Confidence 466777 88999999999999999999999999988653 345 99999999999999999999999998 999
Q ss_pred EEeec
Q 020065 201 ISYSR 205 (331)
Q Consensus 201 v~~ak 205 (331)
|+|++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 127
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=1.4e-15 Score=114.60 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=63.1
Q ss_pred EEeccCCCCCCHHHHHHHHccCC--CeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG--~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
|+|+||+.++|+++|+++|+.|| .|.++++..++ +|+ |||+|.+.++|.+|++.|||..|.|+ .|+|++
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~V~~ 79 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---NPVVTP 79 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEE-EEECC-CHHHHHHHHHHGGGSCSSSC---CCEECC
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcE-EEEEECCHHHHHHHHHHcCCCeeCCE---EEEEEE
Confidence 34999999999999999999999 99999987642 455 99999999999999999999999999 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 80 ~~~~~ 84 (90)
T 3p5t_L 80 SNKLE 84 (90)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87543
No 128
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.57 E-value=2e-15 Score=116.12 Aligned_cols=76 Identities=13% Similarity=0.205 Sum_probs=68.7
Q ss_pred CcEEEEEeccCCC------CCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccC-
Q 020065 126 SNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYD- 193 (331)
Q Consensus 126 ~~~l~v~v~nl~~------~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~- 193 (331)
+++|| |+|||. ++++++|+++|++||.|.+|+|..+ ++|+ |||+|.+.++|.+|++.|||..|.+
T Consensus 6 ~~~vf--V~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~-afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 6 DQYIV--VNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGF-LFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp GGEEE--EESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CcEEE--EeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHHhCCcccCCC
Confidence 67788 899999 9999999999999999999998743 3577 9999999999999999999999998
Q ss_pred CCceEEEEEeecCC
Q 020065 194 GGFCKLHISYSRHT 207 (331)
Q Consensus 194 ~~~~~l~v~~ak~~ 207 (331)
+ .|+|++++..
T Consensus 83 r---~l~V~~a~~~ 93 (100)
T 3ns6_A 83 H---RLFLYTMKDV 93 (100)
T ss_dssp C---BCEEEESHHH
T ss_pred e---EEEEEECchh
Confidence 8 9999998654
No 129
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=113.92 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=69.0
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
...++|| |.||+.++|+++|+++|+.||.|++|+|.+++ +|+ |||+|.+.++|.+|++.||+ .|.++ .
T Consensus 15 ~~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~~~~-~~~g~---~ 87 (116)
T 2cqd_A 15 TTFTKIF--VGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGY-GFVTMADRAAAERACKDPNP-IIDGR---K 87 (116)
T ss_dssp CSSSEEE--EECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSE-EEEEESSHHHHHHHHTCSSC-EETTE---E
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceE-EEEEECCHHHHHHHHHhCCC-cCCCE---E
Confidence 3467888 88999999999999999999999999997642 566 99999999999999999998 78887 9
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|+|+|++...
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999987543
No 130
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.57 E-value=4.5e-15 Score=110.64 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=62.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+. .++++|||+|.+.++|.+|++.|||..+ .|+.|+|.+
T Consensus 12 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~ 82 (87)
T 3bs9_A 12 GDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------GGRQIRTNW 82 (87)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEe
Confidence 356789999999999999999999988762 3467999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 8754
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=110.65 Aligned_cols=75 Identities=17% Similarity=0.434 Sum_probs=67.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccC--CCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~f--G~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
.+++|| |.||+..+|+++|+++|+.| |.|.+|++.+ |+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~---g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 84 (99)
T 2cpd_A 14 SVKILY--VRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR---DY-AFVHFSNREDAVEAMKALNGKVLDGS---PIEVT 84 (99)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHHHTTSTTCEEEEEECS---SE-EEEEESSHHHHHHHHHHHSSEEETTE---EEEEE
T ss_pred CcCEEE--EeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC---Ce-EEEEeCCHHHHHHHHHHhCCCEeCCc---EEEEE
Confidence 467888 88999999999999999999 9999988753 55 99999999999999999999999988 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
|++...
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 997654
No 132
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4.6e-15 Score=114.49 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=70.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|| |+||+..+++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 8 ~~~l~--V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 81 (104)
T 1p1t_A 8 LRSVF--VGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGY-GFCEYQDQETALSAMRNLNGREFSGR---ALR 81 (104)
T ss_dssp HSCEE--EESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEE-EEEECSCHHHHHHHHHHSSSBSCSSS---CBE
T ss_pred ccEEE--EeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceE-EEEEECCHHHHHHHHHHhCCCeeCCc---EEE
Confidence 46677 88999999999999999999999999987653 455 99999999999999999999999998 999
Q ss_pred EEeecCCCcc
Q 020065 201 ISYSRHTDLS 210 (331)
Q Consensus 201 v~~ak~~~~~ 210 (331)
|+|++.....
T Consensus 82 v~~a~~~~~~ 91 (104)
T 1p1t_A 82 VDNAASEKNK 91 (104)
T ss_dssp EEETTCTTHH
T ss_pred EEeCCCccch
Confidence 9999766543
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=1e-14 Score=113.89 Aligned_cols=75 Identities=23% Similarity=0.356 Sum_probs=67.8
Q ss_pred CCcEEEEEeccCCCC-CCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 125 ESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~-vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
.+++|| |.||+.. +|+++|+++|+.||.|++|++ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 26 ~~~~l~--V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~ 96 (110)
T 1wf1_A 26 INSRVF--IGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGY-AFVQYSNERHARAAVLGENGRVLAGQ---TLDINM 96 (110)
T ss_dssp CSSEEE--ECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTE-EEEECSSSHHHHHHHHHHTTCEETTE---ECCEEE
T ss_pred CCcEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 357788 8999999 999999999999999999999 3466 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 97 a~~~~ 101 (110)
T 1wf1_A 97 AGEPK 101 (110)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=1.3e-14 Score=114.05 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=70.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc--CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK--NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~--~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
++++|| |+||+..+|+++|+++|+.||.|.+|.+..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 7 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 80 (115)
T 3lqv_A 7 VNRILY--IRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGT-AYVVYEDIFDAKNAVDHLSGFNVSNR---YLVVL 80 (115)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTC-EEEEESSHHHHHHHHHHHTTCBSSSC---BCEEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcE-EEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 467888 8899999999999999999999999998754 3566 99999999999999999999999998 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
|++...
T Consensus 81 ~a~~~~ 86 (115)
T 3lqv_A 81 YYNANR 86 (115)
T ss_dssp ECCHHH
T ss_pred EecCCh
Confidence 997543
No 135
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=114.31 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHcc-CCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCc-ccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~-fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~-i~~~~~~~ 198 (331)
++++|| |.||+.++|+++|+++|+. ||.|.+|+|..+. +|+ |||+|.+.++|.+|++.|||.. |.++ .
T Consensus 8 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~g~---~ 81 (104)
T 2dhg_A 8 PEYSLF--VGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGY-GFVKFTDELEQKRALTECQGAVGLGSK---P 81 (104)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEE-EEEEESCHHHHHHHHHHTTTCCSSSSS---C
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHHHccCCcccCCE---e
Confidence 356777 8899999999999999999 9999999987652 455 9999999999999999999999 9998 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|+|++....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999875543
No 136
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=8.7e-15 Score=110.99 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 11 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~ 81 (95)
T 2dnz_A 11 GSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL---------AGRPMRVGH 81 (95)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS---------SSSCCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee---------CCcEEEEEE
Confidence 46688999999999999999999998886 33567999999999999999999999987 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8865
No 137
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.56 E-value=6.3e-15 Score=108.83 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=63.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.++.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|+++
T Consensus 8 nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~l~v~~a 78 (83)
T 3md1_A 8 DLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL---------NGRPLRINWA 78 (83)
T ss_dssp CCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee---------CCcEEEEEec
Confidence 5688999999999999999999998875 23467999999999999999999999988 8999999999
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+.+
T Consensus 79 ~~~ 81 (83)
T 3md1_A 79 AKL 81 (83)
T ss_dssp CCC
T ss_pred CcC
Confidence 865
No 138
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=9.2e-15 Score=111.13 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=68.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE-EEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~-i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
+++|| |+||+.++|+++|+++|+.||.|.+++ +..++....|||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 15 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a 89 (96)
T 2e44_A 15 IRKLQ--IRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF---TLKVAYI 89 (96)
T ss_dssp CCCEE--EEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEEC
T ss_pred CCEEE--EEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEc
Confidence 56777 889999999999999999999999994 66654322399999999999999999999999998 9999999
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+.++
T Consensus 90 ~~~~ 93 (96)
T 2e44_A 90 PDEM 93 (96)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 8664
No 139
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=5.6e-15 Score=111.74 Aligned_cols=76 Identities=29% Similarity=0.385 Sum_probs=65.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCC-eeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcC-CcccCCCceEEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG-HCIYDGGFCKLHIS 202 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~-V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng-~~i~~~~~~~l~v~ 202 (331)
.++.|| |+||+.++|+++|+++|+.||. |..+.+. ++|+ |||+|.+.++|.+|++.||| ..|.++ .|+|+
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~-afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~ 78 (93)
T 2cqh_A 7 GMNKLY--IGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGY-AFVDYPDQNWAIRAIETLSGKVELHGK---IMEVD 78 (93)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTE-EEECCSCHHHHHHHHHHHTTTCEETTE---ECEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCE-EEEEECCHHHHHHHHHHccCCeeECCE---EEEEE
Confidence 356788 8999999999999999999999 5555553 3465 99999999999999999999 999988 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
|++...
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 997654
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.56 E-value=1.1e-14 Score=109.07 Aligned_cols=77 Identities=13% Similarity=0.144 Sum_probs=69.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
+++|| |+||+.++++++|+++|++| .|.++++. +++|+ |||+|.+.++|.+|++.|||..+.++ .|+|+|++
T Consensus 5 ~~~l~--V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~ 76 (88)
T 1wg1_A 5 SSGIL--VKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRT-AFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQP 76 (88)
T ss_dssp CCCEE--EESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTE-EEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcE-EEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEcC
Confidence 56677 89999999999999999999 99999886 55566 99999999999999999999999998 99999997
Q ss_pred CCCcc
Q 020065 206 HTDLS 210 (331)
Q Consensus 206 ~~~~~ 210 (331)
...+-
T Consensus 77 ~~~~~ 81 (88)
T 1wg1_A 77 TDALL 81 (88)
T ss_dssp CCCCC
T ss_pred CCceE
Confidence 66543
No 141
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=114.05 Aligned_cols=78 Identities=28% Similarity=0.412 Sum_probs=69.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCee--------EEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCI 191 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~--------~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i 191 (331)
.+++|| |.||+.++|+++|+++|+.||.|. +|+|+.++ +|+ |||+|.+.++|.+|++.|||..|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 14 DNSAIY--VQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD-ATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCEEE--EECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSE-EEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCEEE--EcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeE-EEEEECCHHHHHHHHHHcCCCcc
Confidence 467888 889999999999999999999999 68887642 566 99999999999999999999999
Q ss_pred cCCCceEEEEEeecCCC
Q 020065 192 YDGGFCKLHISYSRHTD 208 (331)
Q Consensus 192 ~~~~~~~l~v~~ak~~~ 208 (331)
.++ .|+|+|++...
T Consensus 91 ~g~---~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGS---KLKVSLARKKP 104 (113)
T ss_dssp TTE---ECEEECSSCCC
T ss_pred CCC---EEEEEECCCCC
Confidence 998 99999987654
No 142
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-15 Score=115.26 Aligned_cols=70 Identities=16% Similarity=0.074 Sum_probs=61.3
Q ss_pred CCCCCCcHHHHHHhhcccC-ceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCC-CCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFG-FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDG-RSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG-~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng-~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.++++||++|+++|++|| +|.+|.+++ +.+++||||+|.+.++|.+|++.|++ ..| .|++|+|+
T Consensus 8 nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~---------~gr~i~V~ 78 (91)
T 2lxi_A 8 MLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI---------LGQKVSMH 78 (91)
T ss_dssp TCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE---------TTEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE---------CCEEEEEE
Confidence 5689999999999999999 899998875 45678999999999999999998854 455 89999999
Q ss_pred eeccc
Q 020065 77 YSAHT 81 (331)
Q Consensus 77 ~s~~~ 81 (331)
||+.+
T Consensus 79 ~a~~~ 83 (91)
T 2lxi_A 79 YSDPK 83 (91)
T ss_dssp CCCSC
T ss_pred EcCCC
Confidence 99865
No 143
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.56 E-value=8.3e-15 Score=109.64 Aligned_cols=75 Identities=19% Similarity=0.392 Sum_probs=67.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|| |.||+.++|+++|+++|+.||.|.++++..+. +|+ |||+|.+.++|.+|+ .|||..|.++ .|+
T Consensus 6 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~-~~~g~~~~g~---~l~ 78 (89)
T 3ucg_A 6 ARSIY--VGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGF-AYIEFSDKESVRTSL-ALDESLFRGR---QIK 78 (89)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEE-EEEEESSTHHHHHHG-GGTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceE-EEEEECCHHHHHHHH-hcCCCEECCc---EEE
Confidence 45677 88999999999999999999999999987643 555 999999999999999 9999999998 999
Q ss_pred EEeecCC
Q 020065 201 ISYSRHT 207 (331)
Q Consensus 201 v~~ak~~ 207 (331)
|++++..
T Consensus 79 V~~a~~~ 85 (89)
T 3ucg_A 79 VIPKRTN 85 (89)
T ss_dssp EEETTTT
T ss_pred EEEccCC
Confidence 9998653
No 144
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.56 E-value=2.8e-15 Score=117.43 Aligned_cols=71 Identities=6% Similarity=-0.096 Sum_probs=63.8
Q ss_pred CCCCCCCcHHHHHHhhcccC-ceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSLLKVIFILQVFSAFG-FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG-~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++++|+++|+++|++|| +|..+.+..+.+++||||+|.+.++|++||+.|||..| .|+.|+|.+++.
T Consensus 34 gnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l---------~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 34 KNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF---------RGSVITVERDDN 104 (111)
T ss_dssp ECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE---------TTEEEEEEESCC
T ss_pred ECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEECCC
Confidence 36789999999999999999 99999887555778999999999999999999999998 899999999874
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 145
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=111.26 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=62.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|+|
T Consensus 22 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~ 92 (94)
T 2e5h_A 22 SNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL---------FGRVIKASI 92 (94)
T ss_dssp ESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE---------TTEEEEEEE
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee---------CCcEEEEEe
Confidence 35688999999999999999999998876 33567999999999999999999999988 899999999
Q ss_pred ec
Q 020065 78 SA 79 (331)
Q Consensus 78 s~ 79 (331)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 146
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.3e-15 Score=114.49 Aligned_cols=71 Identities=21% Similarity=0.236 Sum_probs=64.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++++|+++|+++|++||.|.+|.+.. +++++||||+|.+.++|.+|++.|||..| .|+.|+|++++.
T Consensus 28 ~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~a~~ 98 (109)
T 1x4a_A 28 GNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY---------DGYRLRVEFPRS 98 (109)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE---------TTEECEEECCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEEccc
Confidence 35688999999999999999999998876 44577999999999999999999999988 899999999886
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
+
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 147
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=108.61 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=67.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
++++|| |+|+ ++|+++|+++|+.||.|.+|+|.+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 14 ~~~~l~--V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~a 84 (97)
T 1x5p_A 14 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA 84 (97)
T ss_dssp CCSEEE--EECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTE-EEEEESSHHHHHHHHHHTTTEEETTE---EEEEECC
T ss_pred CCCEEE--EcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEEEC
Confidence 467888 7786 899999999999999999999864 4465 99999999999999999999999988 9999999
Q ss_pred cCCCc
Q 020065 205 RHTDL 209 (331)
Q Consensus 205 k~~~~ 209 (331)
+....
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 76543
No 148
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.4e-14 Score=111.94 Aligned_cols=76 Identities=12% Similarity=0.333 Sum_probs=67.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
+.++|| |.||+.++|+++|+++|+.|| |++|+|..+. +|+ |||+|.+.++|.+|+ .|||..|.++ .
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~ 85 (104)
T 1wi8_A 14 PPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNK---R 85 (104)
T ss_dssp SCEEEE--EESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSC-EEEEESSHHHHHHHH-GGGTCEETTE---E
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeE-EEEEECCHHHHHHHH-hcCCCEeCCc---E
Confidence 356777 899999999999999999999 9999987542 566 999999999999999 9999999998 9
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|+|+|++...
T Consensus 86 l~V~~a~~~~ 95 (104)
T 1wi8_A 86 IRVDVADQAQ 95 (104)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999987654
No 149
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=117.58 Aligned_cols=78 Identities=13% Similarity=0.333 Sum_probs=69.1
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE--EEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCC----ccc
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH----CIY 192 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~--v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~----~i~ 192 (331)
..+++|| |+||+.++|+++|+++|+.||.|.. |+|++++ +|+ |||+|.+. +|.+|++.|||. .|.
T Consensus 21 ~~~~~lf--V~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~-aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 21 NANDTII--LRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGF-AFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCCEEE--ECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSC-EEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceE-EEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 3467888 9999999999999999999999966 8876543 677 99999999 999999999999 999
Q ss_pred CCCceEEEEEeecCCC
Q 020065 193 DGGFCKLHISYSRHTD 208 (331)
Q Consensus 193 ~~~~~~l~v~~ak~~~ 208 (331)
++ .|+|+|++...
T Consensus 97 gr---~l~V~~a~~~~ 109 (131)
T 2m2b_A 97 GK---TINVEFAKGSK 109 (131)
T ss_dssp GC---CCCCEECCCSC
T ss_pred CE---EEEEEECCCCC
Confidence 99 99999997654
No 150
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.55 E-value=6.4e-15 Score=109.28 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=61.3
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|+++
T Consensus 14 nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 84 (85)
T 3mdf_A 14 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FGRTIRVNLA 84 (85)
T ss_dssp CCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred CCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEc
Confidence 5678999999999999999999998865 23567999999999999999999999988 8999999997
Q ss_pred c
Q 020065 79 A 79 (331)
Q Consensus 79 ~ 79 (331)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=112.40 Aligned_cols=78 Identities=14% Similarity=0.263 Sum_probs=68.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCC-eeEEEEEc------cCCCeeEEEEcCCHHHHHHHHHHhc--CCcccCCC
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGG 195 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~-V~~v~i~~------~~~g~~afV~f~~~~~A~~Ai~~ln--g~~i~~~~ 195 (331)
++++|| |+||+.++|+++|+++|+.||. |.+|.+.. .++|+ |||+|.+.++|.+|++.|| +..|.++
T Consensus 7 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~g~~~~~g~- 82 (109)
T 2dis_A 7 GNCRLF--IGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGF-AFVEYESHRAAAMARRKLMPGRIQLWGH- 82 (109)
T ss_dssp CSEEEE--EECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCE-EEEEESSHHHHHHHHTTTTTCCSCBTTB-
T ss_pred CCCEEE--EeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcE-EEEEecCHHHHHHHHHHhhCCCceecCC-
Confidence 467788 8899999999999999999998 99999872 34566 9999999999999999996 5889988
Q ss_pred ceEEEEEeecCCC
Q 020065 196 FCKLHISYSRHTD 208 (331)
Q Consensus 196 ~~~l~v~~ak~~~ 208 (331)
.|+|+|++...
T Consensus 83 --~l~V~~a~~~~ 93 (109)
T 2dis_A 83 --QIAVDWAEPEI 93 (109)
T ss_dssp --CCEEEESCSSC
T ss_pred --eEEEEEcCCCC
Confidence 99999997654
No 152
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.8e-15 Score=112.53 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=64.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 18 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~ 88 (102)
T 1x5s_A 18 GGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV---------DGRQIRVDQ 88 (102)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT---------TSCCCEEEE
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEE
Confidence 35688999999999999999999999876 23567999999999999999999999987 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98653
No 153
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.54 E-value=9.5e-15 Score=111.16 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=65.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 8 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~ 78 (96)
T 2x1f_A 8 GSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL---------GSRFLKCGY 78 (96)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEE
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEEE
Confidence 35688999999999999999999998876 23468999999999999999999999988 899999999
Q ss_pred eccccc
Q 020065 78 SAHTDL 83 (331)
Q Consensus 78 s~~~~l 83 (331)
++.+..
T Consensus 79 a~~~~~ 84 (96)
T 2x1f_A 79 SSNSDI 84 (96)
T ss_dssp CSCSSG
T ss_pred cCCCCC
Confidence 986643
No 154
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.54 E-value=2.3e-14 Score=118.93 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |.||+.++|+++|+++|+.||.|++|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 38 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 111 (156)
T 1h2v_Z 38 KSCTLY--VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGF-CFVEYYSRADAENAMRYINGTRLDDR---II 111 (156)
T ss_dssp TCCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 467888 88999999999999999999999999987653 355 99999999999999999999999988 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999997543
No 155
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.9e-15 Score=111.30 Aligned_cols=74 Identities=18% Similarity=0.160 Sum_probs=65.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|+ |.||+.++++++|+++|+.||.|.++++..++ +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 4 ~~~~l~--v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~~ 77 (85)
T 1x4e_A 4 GSSGLY--IRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGY-GFVDFDSPSAAQKAVTALKASGVQAQ---MA 77 (85)
T ss_dssp CCCEEE--EESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSE-EEEEESCHHHHHHHHHHHHHHTCCEE---SC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhcCCeEeeE---EE
Confidence 467788 88999999999999999999999999987643 566 99999999999999999999999887 77
Q ss_pred EEEee
Q 020065 200 HISYS 204 (331)
Q Consensus 200 ~v~~a 204 (331)
+++++
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 66654
No 156
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.4e-15 Score=114.68 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|++++
T Consensus 35 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a~ 105 (109)
T 2err_A 35 SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRKIEVNNAT 105 (109)
T ss_dssp ESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE---------TTEECEEEECC
T ss_pred ECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEECC
Confidence 35678999999999999999999998876 33578999999999999999999999988 89999999998
Q ss_pred ccc
Q 020065 80 HTD 82 (331)
Q Consensus 80 ~~~ 82 (331)
.+.
T Consensus 106 ~~~ 108 (109)
T 2err_A 106 ARV 108 (109)
T ss_dssp CSC
T ss_pred CCc
Confidence 653
No 157
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=113.88 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=68.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|| |.||+.++++++|+++|+.||.|.+|+|..+ .+|+ |||+|.+.++|.+|+ .|||..|.++ .|+
T Consensus 25 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 97 (114)
T 2cq4_A 25 ARTVF--CMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGI-AYVEFCEIQSVPLAI-GLTGQRLLGV---PII 97 (114)
T ss_dssp HTEEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCC-EEEEESCGGGHHHHH-HHTTEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcE-EEEEeCcHHHHHHHH-HcCCCEeCCe---EEE
Confidence 56788 8899999999999999999999999999753 3566 999999999999999 9999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+|++...
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99997654
No 158
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.54 E-value=5.2e-15 Score=113.67 Aligned_cols=75 Identities=12% Similarity=0.334 Sum_probs=66.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
..++|| |+||+.++++++|+++|+.|| |.+|+|..+. +|+ |||+|.+.++|.+|+ .|||..|.++ .
T Consensus 18 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~-afV~f~~~~~a~~Ai-~l~g~~~~g~---~ 89 (100)
T 2j76_E 18 PPYTAF--LGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGF-GYAEFEDLDSLLSAL-SLNEESLGNR---R 89 (100)
T ss_dssp --CEEE--ESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSC-EEEEECCHHHHHHHH-HTTTCCBTTB---C
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeE-EEEEECCHHHHHHHH-hcCCCEECCe---E
Confidence 467788 999999999999999999999 9999987643 566 999999999999999 8999999998 9
Q ss_pred EEEEeecCC
Q 020065 199 LHISYSRHT 207 (331)
Q Consensus 199 l~v~~ak~~ 207 (331)
|+|++++..
T Consensus 90 l~V~~a~~~ 98 (100)
T 2j76_E 90 IRVDVADQA 98 (100)
T ss_dssp CCCEECCCS
T ss_pred EEEEeccCC
Confidence 999998754
No 159
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.54 E-value=2.1e-14 Score=110.75 Aligned_cols=76 Identities=11% Similarity=0.316 Sum_probs=67.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
+.++|| |.||+.++|+++|+++|+.|| |++|+|..++ +|+ |||+|.+.++|.+|+ .|||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l 85 (103)
T 2dng_A 14 PPYTAY--VGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGF-CYVEFDEVDSLKEAL-TYDGALLGDR---SL 85 (103)
T ss_dssp SCEEEE--EESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHG-GGTTCEETTE---EC
T ss_pred CCeEEE--EeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceE-EEEEECCHHHHHHHH-hhCCCeECCe---EE
Confidence 466777 899999999999999999997 9999987653 455 999999999999999 8999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999987654
No 160
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=111.49 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +++||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~---------~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 21 GNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPL---------RGKQLRVRFACHS 89 (99)
T ss_dssp ESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCB---------TTBCCEEEESSCC
T ss_pred eCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEe---------CCceEEEEEcCCC
Confidence 35688999999999999999999998886 467999999999999999999999988 7999999999865
Q ss_pred c
Q 020065 82 D 82 (331)
Q Consensus 82 ~ 82 (331)
.
T Consensus 90 ~ 90 (99)
T 2cpj_A 90 A 90 (99)
T ss_dssp S
T ss_pred C
Confidence 3
No 161
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-15 Score=112.58 Aligned_cols=77 Identities=16% Similarity=0.264 Sum_probs=66.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..++|+ |.||+.++++++|+++|+.||.|.+++++.+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 87 (98)
T 2cqp_A 14 GPTIIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (98)
T ss_dssp SSEEEE--EESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEE-EEEEESCHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeE-EEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 356777 8999999999999999999999987765543 2455 99999999999999999999999998 99
Q ss_pred EEEeecCC
Q 020065 200 HISYSRHT 207 (331)
Q Consensus 200 ~v~~ak~~ 207 (331)
+|+|++..
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998643
No 162
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.54 E-value=4.5e-15 Score=111.73 Aligned_cols=70 Identities=16% Similarity=0.044 Sum_probs=60.2
Q ss_pred CCCCCCcHHHHHHhhcccC--ceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG--~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.++++|+++|+++|++|| .|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .|+.|+|.
T Consensus 8 nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~---------~gr~i~V~ 78 (90)
T 3p5t_L 8 NLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------HGQNPVVT 78 (90)
T ss_dssp SCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS---------SSCCCEEC
T ss_pred CCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee---------CCEEEEEE
Confidence 5688999999999999999 999998876 34567999999999999999999999988 89999999
Q ss_pred eeccc
Q 020065 77 YSAHT 81 (331)
Q Consensus 77 ~s~~~ 81 (331)
++...
T Consensus 79 ~~~~~ 83 (90)
T 3p5t_L 79 PSNKL 83 (90)
T ss_dssp CC---
T ss_pred ECCCC
Confidence 98754
No 163
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=110.71 Aligned_cols=73 Identities=14% Similarity=0.180 Sum_probs=64.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec--CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~--~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++|+++|+++|++||.|.+|.+.+. .++++|||+|.+.++|.+|++.|||..| .|+.|+|.+++
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a~ 91 (103)
T 2cq3_A 21 SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV---------EGRKIEVNNAT 91 (103)
T ss_dssp ESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE---------TTEECEEEECC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEcc
Confidence 356789999999999999999999988862 3567999999999999999999999988 89999999998
Q ss_pred cccc
Q 020065 80 HTDL 83 (331)
Q Consensus 80 ~~~l 83 (331)
.+..
T Consensus 92 ~~~~ 95 (103)
T 2cq3_A 92 ARVM 95 (103)
T ss_dssp SSCC
T ss_pred cCCC
Confidence 6643
No 164
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=111.79 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=64.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec--CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK--TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~--~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++|+++|+++|++||+|.+|.+.+. ..++||||+|.+.++|.+|++.|||..| .|+.|+|.+++
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~a~ 91 (103)
T 2d9p_A 21 KNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV---------ATKPLYVALAQ 91 (103)
T ss_dssp ECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSBCEEEECS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe---------CCcEEEEEEec
Confidence 356889999999999999999999988863 4567999999999999999999999988 89999999998
Q ss_pred ccc
Q 020065 80 HTD 82 (331)
Q Consensus 80 ~~~ 82 (331)
.+.
T Consensus 92 ~~~ 94 (103)
T 2d9p_A 92 RKE 94 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 165
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=4.6e-15 Score=112.53 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=65.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..++|+ |.||+.++|+++|+++|+.||.|.+++++.+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~l 87 (95)
T 2ek1_A 14 GPTVIK--VQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGE-AMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (95)
T ss_dssp -CEEEE--EECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeE-EEEEECCHHHHHHHHHHhCCCeECCc---EE
Confidence 356777 8999999999999999999999987776542 2455 99999999999999999999999998 99
Q ss_pred EEEeec
Q 020065 200 HISYSR 205 (331)
Q Consensus 200 ~v~~ak 205 (331)
+|++++
T Consensus 88 ~v~~a~ 93 (95)
T 2ek1_A 88 KLSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEecc
Confidence 999875
No 166
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=110.41 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=62.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCC--CceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG--PCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~--g~~i~v~~s~~ 80 (331)
+.++++|+++|+++|++||.|.+|.+.++ ++||||+|.+.++|.+|++.|||..| . |+.|+|+|++.
T Consensus 24 nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~---------~~~g~~l~V~~a~~ 92 (97)
T 1why_A 24 GLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPL---------GGPDRRLRVDFAKS 92 (97)
T ss_dssp CCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBC---------SSSSCBCEEEECCC
T ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEe---------CCCCcEEEEEECCC
Confidence 56789999999999999999999988764 56999999999999999999999988 6 99999999986
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
+
T Consensus 93 ~ 93 (97)
T 1why_A 93 G 93 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 167
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.1e-14 Score=114.08 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|++||.|.+|.+.+ ++++|||+|.+.++|.+|++.|||..| .|+.|+|+|++...
T Consensus 17 nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 17 NLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKF---------HHVPLYLEWAPIGV 85 (111)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBS---------SSSBCEEEEEETTT
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEE---------CCeEEEEEECCCCc
Confidence 5689999999999999999999998875 557899999999999999999999988 89999999998653
Q ss_pred c
Q 020065 83 L 83 (331)
Q Consensus 83 l 83 (331)
.
T Consensus 86 ~ 86 (111)
T 1whx_A 86 F 86 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 168
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=117.04 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHH----HhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFIL----QVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~----~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+ ++|++||+|.+|.+.+ ++++|||||+|.+.++|.+|++.|||..| .|+.|+|+
T Consensus 35 ~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l---------~gr~l~V~ 105 (127)
T 2a3j_A 35 TNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF---------QGNPLVIT 105 (127)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC---------TTSCCEEE
T ss_pred eCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe---------CCCEEEEE
Confidence 3567899999876 7999999999998876 45678999999999999999999999988 79999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
|++.+.
T Consensus 106 ~a~~~~ 111 (127)
T 2a3j_A 106 FSETPQ 111 (127)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998653
No 169
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=116.25 Aligned_cols=75 Identities=19% Similarity=0.379 Sum_probs=67.4
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
..+++|| |.||+..+|+++|+++|+.||.|++|++.++ ++|+ |||+|.+.++|.+|++.|||..|.++ .
T Consensus 61 ~~~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~ 134 (140)
T 2ku7_A 61 TTKRVLY--VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGF-AFVEFELAEDAAAAIDNMNESELFGR---T 134 (140)
T ss_dssp SSCCEEE--EECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSE-EEEEESCHHHHHHHHHHSTEEEETTE---E
T ss_pred CCCcEEE--EEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 3567888 8899999999999999999999999998764 3566 99999999999999999999999998 9
Q ss_pred EEEEee
Q 020065 199 LHISYS 204 (331)
Q Consensus 199 l~v~~a 204 (331)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999985
No 170
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.53 E-value=8.2e-15 Score=106.17 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=62.3
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
|+|+||+.++|+++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|.+|++ |||..|.++ .|+|++|
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGF-GFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBE-EEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcE-EEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence 4489999999999999999999999999987543 466 9999999999999998 999999998 9999875
No 171
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.4e-14 Score=112.01 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=67.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
+++|| |+||+.++|+++|+++|+.||.|.+|+|.++ ++|+ |||+|.+.++|.+|++ +||..|.|+ .|+|
T Consensus 11 ~~~lf--V~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~-aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l~V 83 (103)
T 1s79_A 11 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVE-TPGQKYKET---DLLI 83 (103)
T ss_dssp GGCEE--EECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCE-EEEEESSHHHHHHHHT-SSCCCCTTT---TCEE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccE-EEEEECCHHHHHHHHH-cCCCEECCE---EEEE
Confidence 56788 8999999999999999999999999999864 3576 9999999999999999 999999999 9999
Q ss_pred EeecC
Q 020065 202 SYSRH 206 (331)
Q Consensus 202 ~~ak~ 206 (331)
.+++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 98754
No 172
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=111.16 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=61.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeE--------EEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCC
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~--------i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~ 69 (331)
.+.++++|+++|+++|++||.|.+ |.+.+ ++++++|||+|.+.++|.+|++.|||..| .
T Consensus 19 ~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~---------~ 89 (99)
T 2la6_A 19 QGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF---------S 89 (99)
T ss_dssp ECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS---------S
T ss_pred eCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---------C
Confidence 356889999999999999999998 87775 23467999999999999999999999988 8
Q ss_pred CceEEEEeec
Q 020065 70 PCTLRITYSA 79 (331)
Q Consensus 70 g~~i~v~~s~ 79 (331)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999875
No 173
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.7e-14 Score=111.12 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=63.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.++++|+++|+++|++||.|.+|.+.+ ..+++||||+|.+.++|.+|++.|||..| .|+.|+|.|++.
T Consensus 22 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a~~ 92 (103)
T 2cqi_A 22 NLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI---------LGKEVKVNWATT 92 (103)
T ss_dssp SCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEEECCC
T ss_pred CCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc---------CCCeEEEEECCC
Confidence 5678999999999999999999998887 23567999999999999999999999988 799999999986
Q ss_pred cc
Q 020065 81 TD 82 (331)
Q Consensus 81 ~~ 82 (331)
+.
T Consensus 93 ~~ 94 (103)
T 2cqi_A 93 PS 94 (103)
T ss_dssp TT
T ss_pred Cc
Confidence 53
No 174
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=110.85 Aligned_cols=71 Identities=21% Similarity=0.102 Sum_probs=63.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||+|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 15 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a 85 (99)
T 1whw_A 15 NLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF---------QGRMLHVLPS 85 (99)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES---------SSCEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEc
Confidence 5678999999999999999999998876 33567999999999999999999999987 7999999999
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+.+.
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8653
No 175
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.6e-14 Score=112.16 Aligned_cols=80 Identities=15% Similarity=0.243 Sum_probs=67.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCC-----
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG----- 195 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~----- 195 (331)
..+.|| |.||+.++|+++|+++|+.||.|.+|+|..+. +|+ |||+|.+.++|.+|++.|||..|.++.
T Consensus 24 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~-afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 24 DPTNLY--ISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGV-GFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CTTEEE--EESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEE-EEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceE-EEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 467788 88999999999999999999999999987653 345 999999999999999999999994320
Q ss_pred ceEEEEEeecCC
Q 020065 196 FCKLHISYSRHT 207 (331)
Q Consensus 196 ~~~l~v~~ak~~ 207 (331)
...|+|+|+++.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 128999998744
No 176
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.53 E-value=1e-14 Score=114.80 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=64.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.|
T Consensus 31 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~ 101 (115)
T 2cpz_A 31 YHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI---------GMKRLKVQL 101 (115)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEE
Confidence 35688999999999999999999998876 23457999999999999999999999988 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98653
No 177
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.5e-14 Score=110.82 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||.|.+|.+.+ ++.+++|||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 23 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 93 (100)
T 2do4_A 23 SGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI---------KENIIKVAIS 93 (100)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES---------SSCEEEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEC
Confidence 35678999999999999999999998887 23457999999999999999999999887 8999999999
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+.+
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 855
No 178
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=110.15 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=62.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ ++.+++|||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~ 91 (95)
T 2cqc_A 21 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DGRRIRVSG 91 (95)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEEC
T ss_pred ECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEe
Confidence 45688999999999999999999998876 23467999999999999999999999988 899999999
Q ss_pred ecc
Q 020065 78 SAH 80 (331)
Q Consensus 78 s~~ 80 (331)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 179
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=110.35 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=62.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||+|.+|.+.+. .++++|||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 22 ~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a 92 (95)
T 2ywk_A 22 GNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL---------YGRPINVSGP 92 (95)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE---------TTEECEEECC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCCEEEEEEc
Confidence 456889999999999999999999988762 3467999999999999999999999988 7999999998
Q ss_pred cc
Q 020065 79 AH 80 (331)
Q Consensus 79 ~~ 80 (331)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 180
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=109.74 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=63.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+++ +.+++||||+|.+.++|.+|++ |||..| .|+.|+|.+
T Consensus 16 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~g~~l~V~~ 85 (99)
T 2dgs_A 16 GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI---------MGKKVEVKR 85 (99)
T ss_dssp ESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS---------SSCBCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE---------CCeEEEEEE
Confidence 35688999999999999999999998876 3357899999999999999998 999987 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98653
No 181
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.53 E-value=2.7e-15 Score=132.64 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=69.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCC--CeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG--~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.++|| |+||++++|+++|+++|+.|| .|++|+|++++ +|| |||+|.+.++|.+||+.|||..|.++ .
T Consensus 68 ~~~lf--VgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGf-aFV~f~~~~~a~~Ai~~lng~~~~Gr---~ 141 (229)
T 3q2s_C 68 RIALY--IGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGF-ALVGVGSEASSKKLMDLLPKRELHGQ---N 141 (229)
T ss_dssp -CEEE--EESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEE-EEEEESCTTHHHHHHTTSTTSCBTTB---C
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCeECCE---E
Confidence 45666 999999999999999999999 99999987653 456 99999999999999999999999998 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|+|++...+
T Consensus 142 l~V~~a~~~~~ 152 (229)
T 3q2s_C 142 PVVTPVNKQFL 152 (229)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEECCCCcc
Confidence 99999976543
No 182
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.4e-14 Score=108.08 Aligned_cols=71 Identities=20% Similarity=0.214 Sum_probs=63.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecC-----CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKT-----AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~-----~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+++|++||.|.+|.+.... .+++|||+|.+.++|.+|++.|||..| .|+.|+|+
T Consensus 10 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~ 80 (88)
T 4a8x_A 10 GRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI---------DGQEITAT 80 (88)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE---------CCeEEEEE
Confidence 3568899999999999999999999886622 567999999999999999999999988 89999999
Q ss_pred eeccc
Q 020065 77 YSAHT 81 (331)
Q Consensus 77 ~s~~~ 81 (331)
++...
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98744
No 183
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=110.49 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCCCCCCcHHHHH----HhhcccCceeEEEEeec-CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFIL----QVFSAFGFVHKITTFEK-TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~----~lF~~fG~V~~i~~~~~-~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+ ++|++||+|.+|.+.+. ..++||||+|.+.++|.+|++.|||..| .|+.|+|+
T Consensus 15 ~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~---------~gr~l~V~ 85 (96)
T 2dgx_A 15 SNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI---------GSKKILVS 85 (96)
T ss_dssp ESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEE
T ss_pred ECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEE
Confidence 3578999999999 99999999999998862 2267999999999999999999999988 89999999
Q ss_pred eeccc
Q 020065 77 YSAHT 81 (331)
Q Consensus 77 ~s~~~ 81 (331)
+++..
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 98754
No 184
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=1.4e-14 Score=109.21 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=63.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.+++
T Consensus 14 ~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~---------~g~~l~v~~a~ 84 (92)
T 2dgv_A 14 RNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL---------SGREIDVRIDR 84 (92)
T ss_dssp CSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB---------TTBCCCCEECS
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEcC
Confidence 45688999999999999999999998876 33567999999999999999999999988 89999999988
Q ss_pred cc
Q 020065 80 HT 81 (331)
Q Consensus 80 ~~ 81 (331)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 185
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.2e-14 Score=112.01 Aligned_cols=72 Identities=15% Similarity=0.189 Sum_probs=64.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+. .+++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 21 ~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~ 91 (103)
T 2cq0_A 21 TNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY---------DHLILNVEW 91 (103)
T ss_dssp ESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee---------CCcEEEEEE
Confidence 356889999999999999999999988762 3467999999999999999999999988 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98653
No 186
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=113.82 Aligned_cols=72 Identities=13% Similarity=0.196 Sum_probs=64.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 13 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a 83 (116)
T 2fy1_A 13 GGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL---------HGKAIKVEQA 83 (116)
T ss_dssp ECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC---------SSSBCEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEC
Confidence 45688999999999999999999998887 33567999999999999999999999988 8999999999
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+.+.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8654
No 187
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=8.1e-15 Score=114.92 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=61.2
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCc-CcccCCCCCCCceEEEEeeccc
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI-PRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~-~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.++++|+++|+++|++||+|.+|++.. .++||||+|.+.++|.+|++.|||+++ . ....|++|+|.|++.-
T Consensus 35 L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~-----~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVD-----DLGQKITLYLNFVEKV 106 (114)
T ss_dssp GGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEEC-----TTSCEEECEEEEESCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEcc-----ccCCCcEEEEEecccC
Confidence 789999999999999999999998875 457999999999999999999999875 1 0125889999998743
No 188
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.2e-14 Score=109.24 Aligned_cols=75 Identities=20% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
++++|| |.||+.++|+++|+++|+.||.| ++..+ .+|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 84 (101)
T 2fc9_A 14 ESKTLV--LSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGY-AFIEFASFEDAKEALNSCNKREIEGR---AIR 84 (101)
T ss_dssp CCSEEE--EESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSE-EEEECSSHHHHHHHHHHTSSEEETTE---EEE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeE-EEEEECCHHHHHHHHHHhCCCEeCCe---EEE
Confidence 467888 88999999999999999999988 33332 3566 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+|++...
T Consensus 85 v~~a~~~~ 92 (101)
T 2fc9_A 85 LELQGPRG 92 (101)
T ss_dssp EEECSSCC
T ss_pred EEEcCCCC
Confidence 99987653
No 189
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=111.89 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=64.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 19 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~ 89 (103)
T 2dnm_A 19 DNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL---------DGRELRVQV 89 (103)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB---------TTBCCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEE
Confidence 45688999999999999999999998876 33567999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9865
No 190
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=107.53 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=64.6
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeec
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 205 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak 205 (331)
.+.|| |+||+.++|+++|+++|+.||.|.+| +..+..|.+|||+|.+.++|.+|++ |||..|.++ .|+|++++
T Consensus 8 ~~~l~--V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVF--VSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRPRE 80 (94)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBCSC
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEECC
Confidence 56777 89999999999999999999999998 4443322159999999999999999 999999998 99999875
Q ss_pred CCC
Q 020065 206 HTD 208 (331)
Q Consensus 206 ~~~ 208 (331)
...
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 191
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.52 E-value=2e-14 Score=115.79 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+ ++.++||||+|.+.++|.+||+.|||..| .|+.|+|.|
T Consensus 52 ~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i---------~g~~l~V~~ 122 (129)
T 2kxn_B 52 FGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL---------DGRRIRVDF 122 (129)
T ss_dssp ETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS---------SSSCCEESC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEE
Confidence 35688999999999999999999998876 34678999999999999999999999987 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 123 a~~~ 126 (129)
T 2kxn_B 123 SITK 126 (129)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8865
No 192
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=2.4e-14 Score=112.89 Aligned_cols=72 Identities=10% Similarity=0.176 Sum_probs=63.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE-----EE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK-----LH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~-----l~ 200 (331)
...|| |.||++++|+++|+++|+.||.|+.|.|+.+ |+ |||+|.+.++|.+||+.|||..|.++ . |+
T Consensus 16 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~-afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i~ 87 (115)
T 3beg_B 16 ENRVV--VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIR 87 (115)
T ss_dssp -CCEE--EEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SE-EEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CE-EEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEEE
Confidence 45677 8999999999999999999999999999877 65 99999999999999999999999998 6 55
Q ss_pred EEeec
Q 020065 201 ISYSR 205 (331)
Q Consensus 201 v~~ak 205 (331)
|..++
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 55543
No 193
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3.3e-14 Score=106.87 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=62.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
+..+|| |+||++++|+++|+++|++||.|.+|+|.++++|+ |||+|++.++|. .|+|..+..+ ...|+|+++
T Consensus 10 ~~~~l~--V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGf-aFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a 81 (89)
T 3d2w_A 10 HGSKVF--VGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAF-AFVTFADDKVAQ----SLCGEDLIIK-GISVHISNA 81 (89)
T ss_dssp -CCEEE--EESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSE-EEEEESCHHHHH----HHTTCEEEET-TEEEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCE-EEEEECCHHHHH----HHcCCCcccC-CEEEEEEEc
Confidence 467788 89999999999999999999999999999888887 999999999988 3677776532 239999998
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+.+.
T Consensus 82 ~~k~ 85 (89)
T 3d2w_A 82 EPKH 85 (89)
T ss_dssp C---
T ss_pred CCCC
Confidence 7554
No 194
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=112.41 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+. .+++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 32 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i---------~g~~l~V~~ 102 (108)
T 2jrs_A 32 GSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL---------AGRPMKVGH 102 (108)
T ss_dssp ECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS---------SSSCCEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEE
Confidence 456889999999999999999999988762 3467999999999999999999999987 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 8754
No 195
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=112.01 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=64.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +..++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 18 ~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~ 88 (102)
T 2cqb_A 18 GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FGRTIRVNL 88 (102)
T ss_dssp ESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE---------TTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEe
Confidence 35688999999999999999999998865 34578999999999999999999999988 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98654
No 196
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=110.14 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |+||+..+|+++|+++|+.||.|..+..-..++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 15 ~~~~l~--V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a 88 (96)
T 1fjc_A 15 AARTLL--AKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI-AYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYT 88 (96)
T ss_dssp GGGEEE--EESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEE-EEEEESSHHHHHHHHHHTTEEEETTE---EEEEEEC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEc
Confidence 467888 88999999999999999999999877222233566 99999999999999999999999998 9999998
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+...
T Consensus 89 ~~~~ 92 (96)
T 1fjc_A 89 GEKG 92 (96)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7554
No 197
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=2.9e-14 Score=111.33 Aligned_cols=77 Identities=13% Similarity=0.206 Sum_probs=66.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |+||+.++|+++|+++|+.||.|.+|+|.+++ +|+ |||+|.+.++|.+|++.+ |..|.|+ .|
T Consensus 24 ~~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~-afV~f~~~~~A~~Ai~~~-~~~l~g~---~l 96 (109)
T 2rs2_A 24 SGCKMF--IGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQS-RHELDSK---TI 96 (109)
T ss_dssp --CCEE--EESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTC-EEEEESSHHHHHHHHHSS-CEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcE-EEEEECCHHHHHHHHHHC-CCcCCCE---EE
Confidence 366777 88999999999999999999999999997643 566 999999999999999987 4888888 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|++++...
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 198
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.52 E-value=3.4e-14 Score=111.68 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=64.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+.+. ..++||||+|.+.++|.+|++.|||..| .|+.|+|.|
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~ 91 (115)
T 2dgo_A 21 GDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL---------GGRQIRTNW 91 (115)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEE
Confidence 456889999999999999999999988762 3467999999999999999999999988 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 199
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=111.12 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 29 ~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~ 99 (106)
T 1p27_B 29 TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------MGQPISVDW 99 (106)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS---------SSSBCEEEE
T ss_pred eCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE---------CCcEEEEEe
Confidence 35678999999999999999999998876 23468999999999999999999999987 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 200
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.2e-14 Score=114.87 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=61.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .|+.|+|+|
T Consensus 46 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~ 116 (118)
T 2khc_A 46 YHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV---------GTKRLKVQL 116 (118)
T ss_dssp ECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE---------TTEECCEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEe
Confidence 35688999999999999999999998875 34578999999999999999999999988 899999998
Q ss_pred ec
Q 020065 78 SA 79 (331)
Q Consensus 78 s~ 79 (331)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 75
No 201
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.52 E-value=1e-14 Score=111.98 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=62.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +++||||+|.+.++|.+|++.|||..| .|+.|+|.|++.
T Consensus 33 ~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a~~ 100 (101)
T 2la4_A 33 GNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPF---------QGRNLRTGWGKE 100 (101)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECCCCBCCC
T ss_pred cCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEEeccC
Confidence 35678999999999999999999998885 567999999999999999999999988 899999999874
No 202
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=4.1e-14 Score=105.47 Aligned_cols=73 Identities=12% Similarity=0.251 Sum_probs=64.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..++|| |+||+.++++++|+++|+.||.|.+|++..++ +|+ |||+|.+.++|.+|++. ++..|.|+ .|
T Consensus 10 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~~-~~~~~~g~---~i 82 (87)
T 3s7r_A 10 DAGKMF--VGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGF-GFILFKDAASVEKVLDQ-KEHRLDGR---VI 82 (87)
T ss_dssp CTTEEE--EECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEE-EEEEESSTHHHHHHHHS-SCEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccE-EEEEECCHHHHHHHHHh-CCCEECCE---EE
Confidence 467888 88999999999999999999999999987643 455 99999999999999965 78889888 99
Q ss_pred EEEee
Q 020065 200 HISYS 204 (331)
Q Consensus 200 ~v~~a 204 (331)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 203
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=111.91 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=68.9
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.++|| |.||+.++|+++|+++|+.||.|.+|+|..+. +|+ |||+|.+.++|.+|++. ||..|.++ .|+
T Consensus 27 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~ 99 (116)
T 1x4b_A 27 FRKLF--IGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF-GFVTFSSMAEVDAAMAA-RPHSIDGR---VVE 99 (116)
T ss_dssp HTEEE--EECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSE-EEEECSSHHHHHHHHTS-CSEEETTE---EEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCce-EEEEeCCHHHHHHHHHh-CCcEECCE---EEE
Confidence 46777 88999999999999999999999999998652 566 99999999999999998 99999998 999
Q ss_pred EEeecCCCc
Q 020065 201 ISYSRHTDL 209 (331)
Q Consensus 201 v~~ak~~~~ 209 (331)
|+|++.+..
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999876653
No 204
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=119.39 Aligned_cols=78 Identities=15% Similarity=0.228 Sum_probs=69.1
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCC--CeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG--~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.+.|| |+||+.++|+++|+++|+.|| .|.+|+|+.++ +|+ |||+|.+.++|.+||+.|||..|.|+ .
T Consensus 55 ~~~lf--VgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGf-aFV~f~~~~~A~~Ai~~lng~~~~Gr---~ 128 (156)
T 3n9u_C 55 RAAVY--VGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGY-AEVVVASENSVHKLLELLPGKVLNGE---K 128 (156)
T ss_dssp -CEEE--EECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEE-EEEEESCHHHHHHHHHHSTTCEETTE---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceE-EEEEECCHHHHHHHHHHcCCCEECCe---E
Confidence 46777 899999999999999999999 99999987542 456 99999999999999999999999998 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|++++...+
T Consensus 129 l~V~~a~~~~~ 139 (156)
T 3n9u_C 129 VDVRPATRQNL 139 (156)
T ss_dssp CEEEECCHHHH
T ss_pred eEEEEcCCCcc
Confidence 99999976543
No 205
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=2.7e-14 Score=110.37 Aligned_cols=71 Identities=23% Similarity=0.343 Sum_probs=62.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCC---ceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP---CTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g---~~i~v~ 76 (331)
+.++++|+++|+++|++||.|.+|.+.+. .+++||||+|.+.++|.+|++.|||..+ .| +.|+|.
T Consensus 22 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~gg~~~~l~V~ 92 (105)
T 2dnh_A 22 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT---------MPGASSSLVVK 92 (105)
T ss_dssp SCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC---------CTTCSSCCEEE
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc---------CCCCCccEEEE
Confidence 56889999999999999999999988873 3367999999999999999999999987 45 999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
+++.+.
T Consensus 93 ~a~~~~ 98 (105)
T 2dnh_A 93 FADTDK 98 (105)
T ss_dssp ESCSSC
T ss_pred ECccCc
Confidence 998653
No 206
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.51 E-value=2.4e-14 Score=114.16 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=67.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|| |+||+.++|+++|+++|+.||.|++|++..++ +|+ |||+|.+.++|.+|+ .|||..|.++ .|+
T Consensus 36 ~~~l~--V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 108 (124)
T 2jwn_A 36 KRSVY--VGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGY-AYIEFAERNSVDAAV-AMDETVFRGR---TIK 108 (124)
T ss_dssp HTEEE--EEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEE-EEEEESSHHHHHHHH-TTTTCEETTE---ECE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccE-EEEEECCHHHHHHHH-hcCCCeECCe---EEE
Confidence 56777 88999999999999999999999999987642 455 999999999999999 7999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+|++...
T Consensus 109 V~~a~~~~ 116 (124)
T 2jwn_A 109 VLPKRTNM 116 (124)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99987543
No 207
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.9e-14 Score=111.21 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=63.7
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 22 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 92 (105)
T 1x5u_A 22 GLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL---------YGKPIRVNKA 92 (105)
T ss_dssp CCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC---------SSCBCEEEET
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEEEC
Confidence 5678999999999999999999998876 23567999999999999999999999987 8999999999
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+.+.
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8653
No 208
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=109.95 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=61.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++++|+++|+++|++||.|. +.++.+++++||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 26 nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 26 NLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL---------GTDTLRVALARQQ 94 (97)
T ss_dssp CCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS---------SSSCCEEEECCCC
T ss_pred CCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEcCCC
Confidence 5688999999999999999996 5555556678999999999999999999999988 8999999998854
No 209
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=109.66 Aligned_cols=77 Identities=14% Similarity=0.305 Sum_probs=69.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..++|| |.||+..+++++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++. ||..|.++ .|
T Consensus 15 ~~~~l~--V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~a~~~-~~~~~~g~---~l 87 (105)
T 2dh8_A 15 EIGKLF--VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGF-GFVKFKDPNCVGTVLAS-RPHTLDGR---NI 87 (105)
T ss_dssp SSSEEC--CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEE-EEEEESSTTHHHHHHHH-CSEEETTE---EE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceE-EEEEECCHHHHHHHHHh-CCCeECCE---EE
Confidence 467788 99999999999999999999999999987753 355 99999999999999999 99999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++.+.
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999987654
No 210
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=2.2e-14 Score=109.40 Aligned_cols=71 Identities=20% Similarity=0.155 Sum_probs=63.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec-------CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~-------~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~ 74 (331)
.+.++++|+++|+++|++||.|.+|.+.+. .+++||||+|.+.++|.+|++.|||..| .|+.|+
T Consensus 11 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~ 81 (98)
T 2cpf_A 11 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV---------DGHKLE 81 (98)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE---------TTEECE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee---------CCeEEE
Confidence 356889999999999999999999988752 3457999999999999999999999988 899999
Q ss_pred EEeeccc
Q 020065 75 ITYSAHT 81 (331)
Q Consensus 75 v~~s~~~ 81 (331)
|.+++.+
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999865
No 211
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=110.36 Aligned_cols=72 Identities=17% Similarity=0.307 Sum_probs=63.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEE-EEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKI-TTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i-~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+++|++||.|.+| .+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.
T Consensus 11 ~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~ 81 (96)
T 1x5t_A 11 GNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL---------CNRPITVS 81 (96)
T ss_dssp ECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE---------TTEECEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEE
Confidence 3568899999999999999999988 7765 33567999999999999999999999988 89999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
+++.+.
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998654
No 212
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.51 E-value=1.1e-14 Score=111.83 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=62.4
Q ss_pred CCCC------CCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCC-c
Q 020065 3 LTLS------LLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP-C 71 (331)
Q Consensus 3 ~~~~------~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g-~ 71 (331)
+.++ ++|+++|+++|++||.|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .| +
T Consensus 13 nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~---------~g~r 83 (100)
T 3ns6_A 13 GAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL---------DLKH 83 (100)
T ss_dssp SCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS---------SSSC
T ss_pred CCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc---------CCCe
Confidence 4567 999999999999999999998875 33568999999999999999999999998 67 9
Q ss_pred eEEEEeeccc
Q 020065 72 TLRITYSAHT 81 (331)
Q Consensus 72 ~i~v~~s~~~ 81 (331)
.|+|.++..+
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 213
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=4.8e-14 Score=109.32 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=67.0
Q ss_pred CCCcEEEEEeccCCC-----CCCHHHHHHHHccCCCeeEEEEEcc------CCCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 124 PESNVLLASIENMQY-----AVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~-----~vt~~~L~~~Fs~fG~V~~v~i~~~------~~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
.++++|+ |.|+.. +-++++|+++|++||.|++|+|.+. ++|+ |||+|.+.++|.+|++.|||+.+.
T Consensus 6 ~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~-~FV~f~~~~~A~~Ai~~lnG~~~~ 82 (105)
T 2pe8_A 6 CPTKVVL--LRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVR-IFLEFERVESAIKAVVDLNGRYFG 82 (105)
T ss_dssp SCCSEEE--EESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEE-EEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEE--EEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEE-EEEEECCHHHHHHHHHHHCCCEEC
Confidence 4588888 778853 2378999999999999999998753 2566 999999999999999999999999
Q ss_pred CCCceEEEEEeecCCC
Q 020065 193 DGGFCKLHISYSRHTD 208 (331)
Q Consensus 193 ~~~~~~l~v~~ak~~~ 208 (331)
|+ .|+|+|++...
T Consensus 83 Gr---~i~v~~a~~~~ 95 (105)
T 2pe8_A 83 GR---VVKACFYNLDK 95 (105)
T ss_dssp TE---ECEEEECCHHH
T ss_pred Cc---EEEEEEcCHHH
Confidence 98 99999987543
No 214
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.51 E-value=2.7e-14 Score=110.78 Aligned_cols=69 Identities=17% Similarity=0.114 Sum_probs=62.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|+.||.|.+|.+... .++++|||+|.+.++|.+|++.|||..| .|+.|+|+++
T Consensus 35 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a 105 (107)
T 3ulh_A 35 SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL---------DGRPMNIQLV 105 (107)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe---------CCcEEEEEEe
Confidence 456889999999999999999999988762 3467999999999999999999999988 8999999998
Q ss_pred c
Q 020065 79 A 79 (331)
Q Consensus 79 ~ 79 (331)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 215
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=6e-15 Score=110.81 Aligned_cols=74 Identities=15% Similarity=0.322 Sum_probs=64.0
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
+|+ |+||+.++++++|+++|+.||.|.+|++.++. +|+ |||+|.+.+ |.+|++.|||..|.|+ .|+|+
T Consensus 3 ~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~ 75 (90)
T 2ki2_A 3 NIY--VGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGF-GFVEMQEES-VSEAIAKLDNTDFMGR---TIRVT 75 (90)
T ss_dssp EEE--EEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEE-EEEEECTTH-HHHHHHTSCSSCCSSS---SCSEE
T ss_pred EEE--ECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceE-EEEEECCHH-HHHHHHHhCCCEECCe---EEEEE
Confidence 455 89999999999999999999999999987542 556 999999999 9999999999999998 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
+|+...
T Consensus 76 ~a~~~~ 81 (90)
T 2ki2_A 76 EANPKK 81 (90)
T ss_dssp EC----
T ss_pred EcCCCC
Confidence 987654
No 216
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.5e-14 Score=105.61 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=61.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|++||+|.+|.+. ++||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+.
T Consensus 15 nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 15 NLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKL---------HGVNINVEASKNKS 81 (90)
T ss_dssp SCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBC---------SSCBCEEECSSCCC
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCcc---------CCcEEEEEECCCCC
Confidence 567899999999999999999999887 36999999999999999999999887 89999999998653
No 217
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2e-14 Score=106.65 Aligned_cols=66 Identities=17% Similarity=0.178 Sum_probs=60.3
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHh-CCCCcCcccCCCCCCCceEEEEeec
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~l-ng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+.++++|+++|+++|++||.|.+|.+.+ ++++|||+|.+.++|.+|++.| ||..+ .|+.|+|+|++
T Consensus 19 ~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~---------~g~~l~v~~ak 85 (85)
T 2ytc_A 19 GLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIV---------NGRRLNVKWGR 85 (85)
T ss_dssp CCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEE---------TTEECCEEECC
T ss_pred CCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeE---------CCCEEEEEecC
Confidence 5678999999999999999999999887 4579999999999999999999 88887 89999999975
No 218
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.50 E-value=4e-14 Score=109.69 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=66.8
Q ss_pred CcEEEEEeccCCCCC------CHHHHHHHHccCCCeeEEEEEcc---CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCc
Q 020065 126 SNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 196 (331)
Q Consensus 126 ~~~l~v~v~nl~~~v------t~~~L~~~Fs~fG~V~~v~i~~~---~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~ 196 (331)
+++|| |+||+..+ |+++|+++|+.||.|.+|+|.+. ++|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 15 ~~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~-afV~f~~~~~A~~Ai~~l~g~~~~g~-- 89 (105)
T 2nlw_A 15 DSVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ-- 89 (105)
T ss_dssp CSEEE--EESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCE-EEEEECSSSHHHHHHHHCSSEECSTT--
T ss_pred CCEEE--EeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeE-EEEEECCHHHHHHHHHHhCCcccCCC--
Confidence 67788 88999999 78999999999999999998742 3566 99999999999999999999999874
Q ss_pred eEEEEEeecC
Q 020065 197 CKLHISYSRH 206 (331)
Q Consensus 197 ~~l~v~~ak~ 206 (331)
..|+|++++.
T Consensus 90 ~~l~V~~a~~ 99 (105)
T 2nlw_A 90 HTFRVNLFTD 99 (105)
T ss_dssp CEEEEECSCC
T ss_pred ceEEEEEcch
Confidence 3899999863
No 219
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=4.4e-14 Score=109.96 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=62.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCC-----ceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP-----CTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g-----~~i~v~ 76 (331)
.+.++++|+++|+++|++||+|.+|.+.+. +||||+|.+.++|.+||+.|||..| .| +.|+|.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 21 SGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGETAYIRVK 88 (108)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEE---------ECTTSCEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCc---------cCCcCcceEEEEE
Confidence 356899999999999999999999998874 6999999999999999999999988 67 999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
+++.+.
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998653
No 220
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=4.2e-14 Score=111.13 Aligned_cols=79 Identities=24% Similarity=0.351 Sum_probs=68.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCe----eEEEEEcc-CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V----~~v~i~~~-~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |.||+.++|+++|+++|+.||.| ..+++... ++|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 24 ~~~~l~--V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 97 (115)
T 2cpx_A 24 PNKVLY--LKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQ-AFITFPNKEIAWQALHLVNGYKLYGK---IL 97 (115)
T ss_dssp CCSEEE--EECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSE-EEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceE-EEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 467888 88999999999999999999999 56665543 3566 99999999999999999999999998 99
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|++....
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999986553
No 221
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=107.36 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=60.3
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+++|+++|+++|++||+|.+|.+.+ ++++|||+|.+.++|.+|++.|||..| .|+.|+|.|++.+.
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 23 EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQLKVNIARKQP 88 (97)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHTTTEEE---------TTEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHhhCCCEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEEECCCCC
Confidence 5899999999999999999998854 567999999999999999999999988 89999999998653
No 222
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=104.23 Aligned_cols=76 Identities=7% Similarity=0.128 Sum_probs=67.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
..++|+ |.||+.++|+++|+++|+.| .|.+|+|..+. +|+ |||+|.+.++|.+|++ |||..|.++ .|+
T Consensus 9 ~~~~l~--v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~A~~-~~g~~~~gr---~i~ 80 (91)
T 2dgw_A 9 TCHTVK--LRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGY-IFVDFSNEEEVKQALK-CNREYMGGR---YIE 80 (91)
T ss_dssp CCCEEE--EECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEE-EEEECSSHHHHHHHHH-SCSEEETTE---EEE
T ss_pred CccEEE--EECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceE-EEEEECCHHHHHHHHH-hCCceeCCc---EEE
Confidence 356777 89999999999999999999 99999987653 345 9999999999999999 999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|.+++...
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99987553
No 223
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-14 Score=112.14 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=63.6
Q ss_pred CCCCCCcHHHHH---HhhcccCceeEEEEeec-------CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCce
Q 020065 3 LTLSLLKVIFIL---QVFSAFGFVHKITTFEK-------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT 72 (331)
Q Consensus 3 ~~~~~vtee~L~---~lF~~fG~V~~i~~~~~-------~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~ 72 (331)
+.++++|+++|+ ++|++||+|.+|.+.+. ++++||||+|.+.++|.+||+.|||..| .|+.
T Consensus 22 nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---------~gr~ 92 (111)
T 2cpi_A 22 GLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---------DGRT 92 (111)
T ss_dssp EECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE---------TTEE
T ss_pred CCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE---------CCEE
Confidence 457899999999 99999999999988762 3447999999999999999999999988 8999
Q ss_pred EEEEeecccc
Q 020065 73 LRITYSAHTD 82 (331)
Q Consensus 73 i~v~~s~~~~ 82 (331)
|+|++++.+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998664
No 224
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.50 E-value=9.9e-14 Score=110.39 Aligned_cols=75 Identities=23% Similarity=0.343 Sum_probs=67.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |+|+ ++|+++|+++|+.||.|.+|++.+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 38 ~~~~lf--Vgnl--~~te~~L~~~F~~~G~I~~v~i~~-~kg~-aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~a 108 (121)
T 2bz2_A 38 KGNTLY--VYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNC-AFVTYEKMESADQAVAELNGTQVESV---QLKVNIA 108 (121)
T ss_dssp CCCEEE--EECS--SCCHHHHHHHHSTTCCCSCEEEET-TTTE-EEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEEC
T ss_pred CCCEEE--EcCC--CCCHHHHHHHHHccCCEEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEe
Confidence 467888 7786 799999999999999999999974 4465 99999999999999999999999998 9999999
Q ss_pred cCCC
Q 020065 205 RHTD 208 (331)
Q Consensus 205 k~~~ 208 (331)
+...
T Consensus 109 ~~~~ 112 (121)
T 2bz2_A 109 RKQP 112 (121)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8664
No 225
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7.7e-14 Score=109.40 Aligned_cols=71 Identities=15% Similarity=0.125 Sum_probs=63.3
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||+|.+|.+.+. ..+++|||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 21 ~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 91 (114)
T 2do0_A 21 ANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL---------FDRPMHVKMD 91 (114)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe---------CCCEEEEEEc
Confidence 356889999999999999999999988763 2357999999999999999999999988 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
No 226
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.49 E-value=5.7e-14 Score=108.28 Aligned_cols=68 Identities=16% Similarity=0.344 Sum_probs=61.7
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|++||.|.+|.+.+ +||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+.
T Consensus 18 nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 18 NLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDL---------EGENIEIVFAKPPD 84 (103)
T ss_dssp CCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEE---------TTEEEEEEECCCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCcc---------CCCEEEEEEcCCCc
Confidence 5678999999999999999999998874 4899999999999999999999988 89999999998654
Q ss_pred c
Q 020065 83 L 83 (331)
Q Consensus 83 l 83 (331)
.
T Consensus 85 ~ 85 (103)
T 2dgu_A 85 Q 85 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 227
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.9e-14 Score=110.37 Aligned_cols=70 Identities=24% Similarity=0.308 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||.|.+|.+.+. ++||||+|.+.++|.+|++.|||..| .|+.|+|.|++.+
T Consensus 31 ~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 31 GGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTI---------EGHVVKCYWGKES 99 (109)
T ss_dssp ECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEECCCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEecCCC
Confidence 356789999999999999999999998874 57999999999999999999999988 8999999999865
Q ss_pred c
Q 020065 82 D 82 (331)
Q Consensus 82 ~ 82 (331)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 228
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=5.1e-14 Score=109.11 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=63.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec-----CCCceEEEEeCCHHHHHHHHHHh-CCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNAL-DGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~-----~~~~~aFV~f~~~e~A~~Av~~l-ng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.++++|+++|+++|++||.|.+|.+.+. .+++||||+|.+.++|.+|++.| ||..| .|+.|+|.
T Consensus 22 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---------~g~~l~v~ 92 (107)
T 2cph_A 22 NIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---------YGRRLVLE 92 (107)
T ss_dssp SCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS---------SSCBCEEE
T ss_pred CCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE---------CCCEEEEE
Confidence 56789999999999999999999988753 34679999999999999999999 89887 79999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
|++.+.
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998653
No 229
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=3e-14 Score=103.57 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=62.1
Q ss_pred EeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 132 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 132 ~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
+|+||+.++++++|+++|+.||.|.++++.+++ +|+ |||+|.+.++|.+|++.+| ..|.|+ .|+|++|
T Consensus 4 ~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~~a 76 (77)
T 1uaw_A 4 FIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGF-GFVTFMDQAGVDKVLAQSR-HELDSK---TIDPKVA 76 (77)
T ss_dssp EEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSE-EEECCCCTTHHHHHHHTTT-CCCSSC---CCEEEEC
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCce-EEEEEcCHHHHHHHHHhCC-CccCCE---EEEEEec
Confidence 389999999999999999999999999987653 466 9999999999999999999 889998 9999886
No 230
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.9e-14 Score=109.94 Aligned_cols=71 Identities=23% Similarity=0.204 Sum_probs=63.6
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.+|.+.+. .+++||||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 15 nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 85 (104)
T 1p1t_A 15 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF---------SGRALRVDNA 85 (104)
T ss_dssp SCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC---------SSSCBEEEET
T ss_pred CCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CCcEEEEEeC
Confidence 56789999999999999999999988763 2467999999999999999999999987 8999999999
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+.+.
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8653
No 231
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=4.4e-14 Score=106.59 Aligned_cols=67 Identities=16% Similarity=0.114 Sum_probs=61.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 16 ~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 16 GNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEF---------QGKRMHVQLSTSR 82 (92)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEE---------TTEEEEEEESSCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCee---------CCcEEEEEEccCC
Confidence 46688999999999999999999998875 3899999999999999999999988 8999999999865
No 232
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.49 E-value=4.3e-14 Score=110.23 Aligned_cols=70 Identities=21% Similarity=0.183 Sum_probs=63.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.|+
T Consensus 33 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a 103 (110)
T 1oo0_B 33 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MGQTIQVDWC 103 (110)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEES
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEEc
Confidence 5678999999999999999999998875 23467999999999999999999999988 8999999999
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+.+
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 854
No 233
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.49 E-value=2.3e-14 Score=103.78 Aligned_cols=67 Identities=12% Similarity=0.018 Sum_probs=59.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.++++|||+|.+.++|.+|++ |||..| .|+.|+|.+
T Consensus 5 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~---------~g~~l~v~~ 74 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI---------NNKMVECKK 74 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS---------SSCCCEEEC
T ss_pred ecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE---------CCEEEEEEe
Confidence 45689999999999999999999998875 3356799999999999999998 999988 899999987
Q ss_pred e
Q 020065 78 S 78 (331)
Q Consensus 78 s 78 (331)
|
T Consensus 75 A 75 (75)
T 2mss_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 234
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=110.05 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhC------CCCcCcccCCCCCCCc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALD------GRSIPRYLLPENMGPC 71 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~ln------g~~~~~~~~~~~~~g~ 71 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|| |..| .|+
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~---------~g~ 91 (111)
T 1x4h_A 21 RNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL---------DGR 91 (111)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES---------SSC
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE---------cCE
Confidence 35688999999999999999999998875 2457799999999999999999999 8877 899
Q ss_pred eEEEEeeccc
Q 020065 72 TLRITYSAHT 81 (331)
Q Consensus 72 ~i~v~~s~~~ 81 (331)
.|+|.+++.+
T Consensus 92 ~l~v~~a~~~ 101 (111)
T 1x4h_A 92 QLKVDLAVTR 101 (111)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEECCCC
Confidence 9999999865
No 235
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.48 E-value=6.9e-14 Score=111.53 Aligned_cols=73 Identities=18% Similarity=0.041 Sum_probs=64.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|++|
T Consensus 41 ~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a 111 (124)
T 2kt5_A 41 SNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DGRPMDIQLV 111 (124)
T ss_dssp ESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES---------SSCEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEEe
Confidence 35678999999999999999999998876 33567999999999999999999999987 8999999999
Q ss_pred ccccc
Q 020065 79 AHTDL 83 (331)
Q Consensus 79 ~~~~l 83 (331)
.....
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 86543
No 236
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.48 E-value=1.7e-14 Score=109.39 Aligned_cols=69 Identities=17% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.++.++. ++.+++|||+|.+.++|.+|++.|||..| .|+.|+|+++
T Consensus 22 nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~gr~l~v~~a 92 (95)
T 2ek1_A 22 NMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GSRKVKLSGP 92 (95)
T ss_dssp CCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEECC
T ss_pred CCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE---------CCcEEEEEec
Confidence 5688999999999999999998765554 23567999999999999999999999988 8999999987
Q ss_pred cc
Q 020065 79 AH 80 (331)
Q Consensus 79 ~~ 80 (331)
+.
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 237
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.48 E-value=7.6e-14 Score=106.54 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=60.2
Q ss_pred CCCC-CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLS-LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~-~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++ ++|+++|+++|++||.|.+|.+. ++||||+|.+.++|.+|++.|||..+ .|+.|+|++++.+
T Consensus 29 nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 29 NLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMN---------FGKKLILEVSSSN 95 (97)
T ss_dssp SCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEE---------TTEECEEEECCCC
T ss_pred CCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEecCCC
Confidence 4577 99999999999999999999884 46999999999999999999999987 8999999998754
No 238
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=1.7e-14 Score=110.04 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=61.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+++++. ++++++|||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~V~~ 91 (98)
T 2cqp_A 21 QNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI---------GSRKVKLVL 91 (98)
T ss_dssp ESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee---------CCeEEEEEE
Confidence 35689999999999999999998665544 23468999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++..
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8744
No 239
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.48 E-value=6.3e-14 Score=109.21 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=61.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||.|.+|.+. ++||||+|.+.++|.+|++.|||..| .|+.|+|.|++.+
T Consensus 37 ~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 37 RPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSF---------ANQPLEVVYSKLP 103 (108)
T ss_dssp CSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEESCSCC
T ss_pred ECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEEecCC
Confidence 3567899999999999999999999887 46999999999999999999999988 8999999998865
No 240
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=1.1e-13 Score=122.05 Aligned_cols=81 Identities=28% Similarity=0.467 Sum_probs=74.2
Q ss_pred CCCcEEEEEeccCCC-CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEE
Q 020065 124 PESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 202 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~-~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~ 202 (331)
+++++|| |+||+. ++|+++|+++|+.||.|.+|++.++++|+ |||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 32 ~~~~~l~--V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~-afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~v~ 105 (229)
T 2adc_A 32 AGNSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRIT 105 (229)
T ss_dssp CCCSEEE--EESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCC-EEEEESCHHHHHHHHHHHTTCBCSSS---BCEEE
T ss_pred CCCCEEE--EeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCE-EEEEECCHHHHHHHHHHhCCCeECCe---EEEEE
Confidence 4578888 889999 99999999999999999999999888787 99999999999999999999999998 99999
Q ss_pred eecCCCcc
Q 020065 203 YSRHTDLS 210 (331)
Q Consensus 203 ~ak~~~~~ 210 (331)
|++.....
T Consensus 106 ~a~~~~~~ 113 (229)
T 2adc_A 106 LSKHQNVQ 113 (229)
T ss_dssp CCSCCCCC
T ss_pred EecCcccc
Confidence 99866443
No 241
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.5e-14 Score=104.27 Aligned_cols=64 Identities=14% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCCCCcHHH----HHHhhccc-CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 3 LTLSLLKVIF----ILQVFSAF-GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 3 ~~~~~vtee~----L~~lF~~f-G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
+.++++++++ |+++|++| |+|.+|. +|+|||+|.+.|+|.+|++.|||..+ .||+|+|+|
T Consensus 16 NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l---------~gr~i~v~~ 80 (96)
T 2diu_A 16 NLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDV---------FGNRIIVSF 80 (96)
T ss_dssp SCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCS---------SSSCCEEES
T ss_pred CCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCcc---------CCceEEEEe
Confidence 5688999988 66899999 5999992 37999999999999999999999998 799999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9955
No 242
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=3.2e-14 Score=108.29 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=63.8
Q ss_pred CCCCCCCcHHHHH----HhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFIL----QVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~----~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+ ++|++||.|.+|.+.+ +.++++|||+|.+.++|.+|++.|||..| .|+.|+|+
T Consensus 14 ~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~ 84 (97)
T 1nu4_A 14 NNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF---------YDKPMRIQ 84 (97)
T ss_dssp ESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEE
T ss_pred eCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE---------CCcEEEEE
Confidence 3568899999999 9999999999998875 33557999999999999999999999988 79999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
|++.+.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998653
No 243
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=4.9e-14 Score=108.92 Aligned_cols=69 Identities=17% Similarity=0.043 Sum_probs=62.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.++|||||+|.+.++|.+|++ +||..| .|+.|+|.++
T Consensus 17 ~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~---------~gr~l~V~~~ 86 (103)
T 1s79_A 17 KGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY---------KETDLLILFK 86 (103)
T ss_dssp ECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC---------TTTTCEEEEH
T ss_pred ECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE---------CCEEEEEEEc
Confidence 35689999999999999999999998886 4567899999999999999999 899887 8999999987
Q ss_pred cc
Q 020065 79 AH 80 (331)
Q Consensus 79 ~~ 80 (331)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 63
No 244
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-14 Score=106.73 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=62.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEE-EEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKI-TTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i-~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++++|+++|+++|++||.|.+| .++..+..+.|||+|.+.++|.+|++.|||..| .|++|+|.+++.+
T Consensus 22 nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~V~~a~~~ 92 (96)
T 2e44_A 22 NIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL---------ENFTLKVAYIPDE 92 (96)
T ss_dssp EECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC---------SSCBCEEEECCCC
T ss_pred cCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEEcCcc
Confidence 457899999999999999999999 466644445699999999999999999999988 8999999999866
Q ss_pred c
Q 020065 82 D 82 (331)
Q Consensus 82 ~ 82 (331)
+
T Consensus 93 ~ 93 (96)
T 2e44_A 93 M 93 (96)
T ss_dssp C
T ss_pred c
Confidence 4
No 245
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.2e-13 Score=106.72 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=67.5
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeE-EEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~-v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.++|| |.||++++|+++|+++|+.||.|.+ |+|..+ ++|+ |||+|.+.++|.+|++. |+..|.++ .|+
T Consensus 15 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~-afV~F~~~~~a~~A~~~-~~~~~~gr---~i~ 87 (104)
T 1wg5_A 15 DGFVR--LRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGE-AFVQFASQEIAEKALKK-HKERIGHR---YIE 87 (104)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSE-EEEEESSHHHHHHHHTT-TTCCSSSS---CCE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CcchhCCc---EEE
Confidence 56777 8999999999999999999999987 776543 3566 99999999999999998 99999998 999
Q ss_pred EEeecCCCcc
Q 020065 201 ISYSRHTDLS 210 (331)
Q Consensus 201 v~~ak~~~~~ 210 (331)
|.++...+..
T Consensus 88 v~~~~~~~~~ 97 (104)
T 1wg5_A 88 IFKSSRAEVR 97 (104)
T ss_dssp EEEECTTTSC
T ss_pred EEECCHHHHH
Confidence 9998765543
No 246
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.48 E-value=2.7e-14 Score=118.73 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=65.1
Q ss_pred CCCCCCCcHHHHHHhhcccC--ceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG--~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
.+.++++|+++|+++|+.|| .|.+|.+++ ++++|||||+|.+.++|.+||+.|||..| .|+.|+|
T Consensus 61 gnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~---------~Gr~l~V 131 (156)
T 3n9u_C 61 GSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL---------NGEKVDV 131 (156)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE---------TTEECEE
T ss_pred eCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CCeEeEE
Confidence 35689999999999999999 999998875 34568999999999999999999999988 8999999
Q ss_pred Eeeccccc
Q 020065 76 TYSAHTDL 83 (331)
Q Consensus 76 ~~s~~~~l 83 (331)
.+++.+.+
T Consensus 132 ~~a~~~~~ 139 (156)
T 3n9u_C 132 RPATRQNL 139 (156)
T ss_dssp EECCHHHH
T ss_pred EEcCCCcc
Confidence 99986544
No 247
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=2e-13 Score=105.07 Aligned_cols=76 Identities=17% Similarity=0.283 Sum_probs=66.4
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |.||+..+++++|+++|+.||.|++|+|..++ +|+ |||+|.+.++|.+|++ +++.|.++ .|
T Consensus 14 ~~~~l~--v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~a~~A~~--~~~~~~g~---~l 85 (103)
T 2cqg_A 14 KTSDLI--VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGF-GFVRFTEYETQVKVMS--QRHMIDGR---WC 85 (103)
T ss_dssp CCCCEE--EESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEE-EEEEESSHHHHHHHHH--SCEEETTE---EE
T ss_pred CCCEEE--EEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccce-EEEEECCHHHHHHHHH--cCCeeCCe---EE
Confidence 466787 88999999999999999999999999987653 355 9999999999999999 47788888 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++.+.
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cqg_A 86 DCKLPNSKQ 94 (103)
T ss_dssp EEECCCTTC
T ss_pred EEEecCCCC
Confidence 999987654
No 248
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=5.4e-14 Score=114.31 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=63.6
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||+|.+|.+++. ++++||||+|.+.++|.+|++.|||..| .|+.|+|.++
T Consensus 49 nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a 119 (139)
T 1u6f_A 49 YIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI---------LNKRLKVALA 119 (139)
T ss_dssp SCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC---------SSCEEEEEES
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEEC
Confidence 56789999999999999999999988763 2467999999999999999999999987 8999999999
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+.+.
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 249
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.48 E-value=5.4e-14 Score=108.84 Aligned_cols=74 Identities=15% Similarity=0.130 Sum_probs=63.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+++ +.+++||||+|.+.++|.+|++.|||..+. ...|+.|+|.+
T Consensus 19 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~------~~~g~~l~v~~ 92 (106)
T 2dgp_A 19 GQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTL------PGMNRPIQVKP 92 (106)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCC------TTCSSCCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCccc------CCCCceEEEEE
Confidence 45688999999999999999999998876 345789999999999999999999998751 02579999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 93 a~~~ 96 (106)
T 2dgp_A 93 ADSE 96 (106)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9865
No 250
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=5.4e-14 Score=112.36 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.++. +.++++|||+|.+.++|.+|++.|||..| .|+.|+|+|
T Consensus 28 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~ 98 (126)
T 3ex7_B 28 TGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL---------MGQPISVDW 98 (126)
T ss_dssp ESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS---------SSSBCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee---------CCeEEEEEE
Confidence 35688999999999999999999998875 33467999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9855
No 251
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=6.6e-14 Score=104.70 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=62.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||.|.+|.+.+ +.++++|||+|.+.++|.+|+ .|||..| .|+.|+|.++
T Consensus 13 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~---------~g~~l~V~~a 82 (89)
T 3ucg_A 13 NVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF---------RGRQIKVIPK 82 (89)
T ss_dssp SCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE---------TTEECEEEET
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE---------CCcEEEEEEc
Confidence 5688999999999999999999998875 345789999999999999999 9999988 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+.+
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 754
No 252
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.4e-14 Score=110.61 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=69.2
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCe-eEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V-~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..++|| |.||++++|+++|+++|+.||.| .+|+|+.+ ++|+ |||+|.+.++|.+|++. ||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~~-~~~~~~gr---~i 86 (114)
T 2cpy_A 14 AKVCAH--ITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ-ALVQFKNEDDARKSERL-HRKKLNGR---EA 86 (114)
T ss_dssp CCCEEE--EESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC-EEEECSSHHHHHHHGGG-CSEEETTE---EE
T ss_pred CccEEE--EeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceE-EEEEECCHHHHHHHHHh-CCCccCCe---EE
Confidence 456777 89999999999999999999999 88888753 3566 99999999999999997 99999998 99
Q ss_pred EEEeecCCCcc
Q 020065 200 HISYSRHTDLS 210 (331)
Q Consensus 200 ~v~~ak~~~~~ 210 (331)
+|.+++.....
T Consensus 87 ~v~~a~~~~~~ 97 (114)
T 2cpy_A 87 FVHVVTLEDMR 97 (114)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999766543
No 253
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=6.4e-14 Score=105.23 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=61.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 15 ~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 15 GNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEV---------KGKRINVELSTKG 81 (90)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEE---------TTEECEEEESCCC
T ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEEEEEECCCC
Confidence 35688999999999999999999999875 3899999999999999999999988 8999999999865
No 254
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-14 Score=107.27 Aligned_cols=69 Identities=10% Similarity=0.051 Sum_probs=60.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|++++
T Consensus 11 ~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~~~~~~ 81 (85)
T 1x4e_A 11 RGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV---------QAQMAKQSG 81 (85)
T ss_dssp ESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC---------CEESCCSSC
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE---------eeEEEeecC
Confidence 45688999999999999999999998876 34577999999999999999999999987 788888876
Q ss_pred ec
Q 020065 78 SA 79 (331)
Q Consensus 78 s~ 79 (331)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 255
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.9e-14 Score=110.44 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=63.2
Q ss_pred CCCCCCCcHHHHHHhhcccCcee--------EEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCC
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVH--------KITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~--------~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~ 69 (331)
.+.++++|+++|+++|++||.|. +|.++. +++++||||+|.+.++|.+|++.|||..| .
T Consensus 21 ~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~ 91 (113)
T 2cpe_A 21 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF---------Q 91 (113)
T ss_dssp ECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE---------T
T ss_pred cCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc---------C
Confidence 35678999999999999999998 577765 24567999999999999999999999988 8
Q ss_pred CceEEEEeecccc
Q 020065 70 PCTLRITYSAHTD 82 (331)
Q Consensus 70 g~~i~v~~s~~~~ 82 (331)
|+.|+|.+++.+.
T Consensus 92 g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 92 GSKLKVSLARKKP 104 (113)
T ss_dssp TEECEEECSSCCC
T ss_pred CCEEEEEECCCCC
Confidence 9999999988653
No 256
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.6e-14 Score=110.38 Aligned_cols=72 Identities=15% Similarity=0.129 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHHHhhcccCce----eEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFV----HKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V----~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.| ..+.+..+++++||||+|.+.++|.+|++.|||..| .|+.|+|.|
T Consensus 31 ~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~v~~ 101 (115)
T 2cpx_A 31 KNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL---------YGKILVIEF 101 (115)
T ss_dssp ECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC---------SSCBCEEEE
T ss_pred eCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe---------CCcEEEEEE
Confidence 3567899999999999999999 566655666778999999999999999999999987 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98653
No 257
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=5.3e-14 Score=111.42 Aligned_cols=78 Identities=12% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCC---eeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~---V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
..++|| |.||++++|+++|+++|+.||. |.+|+|..+. +|+ |||+|.+.++|.+|++ |||..|.++
T Consensus 16 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr--- 88 (118)
T 2db1_A 16 EGYVVK--LRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGE-AFVELESEDDVKLALK-KDRESMGHR--- 88 (118)
T ss_dssp CCCEEE--EESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEE-EEEEBSSHHHHHHHGG-GTTEEETTE---
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCeECCe---
Confidence 356777 8999999999999999999999 8999887543 455 9999999999999999 999999998
Q ss_pred EEEEEeecCCCc
Q 020065 198 KLHISYSRHTDL 209 (331)
Q Consensus 198 ~l~v~~ak~~~~ 209 (331)
.|+|.+++..+.
T Consensus 89 ~i~V~~a~~~~~ 100 (118)
T 2db1_A 89 YIEVFKSHRTEM 100 (118)
T ss_dssp EEEEEEECHHHH
T ss_pred EEEEEECCHHHH
Confidence 999999976653
No 258
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=108.15 Aligned_cols=70 Identities=17% Similarity=0.326 Sum_probs=62.2
Q ss_pred CCCCCCcHHHHHHhhcccCcee-EEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCce----E
Q 020065 3 LTLSLLKVIFILQVFSAFGFVH-KITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT----L 73 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~-~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~----i 73 (331)
+.++++|+++|+++|++||+|. +|.+.+. .+++||||+|.+.++|.+|++.|||..| .|+. |
T Consensus 16 nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~~~~~l 86 (99)
T 2div_A 16 DLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL---------PGATPAKRF 86 (99)
T ss_dssp SCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE---------SSCSSCEEC
T ss_pred CCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc---------CCCCcceeE
Confidence 5678999999999999999999 9988762 3557999999999999999999999988 7888 9
Q ss_pred EEEeeccc
Q 020065 74 RITYSAHT 81 (331)
Q Consensus 74 ~v~~s~~~ 81 (331)
+|+|++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998754
No 259
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=5.3e-14 Score=105.20 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=62.9
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcc--cCCCceEEEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--YDGGFCKLHIS 202 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i--~~~~~~~l~v~ 202 (331)
.+++|| |+||+.++|+++|+++|+.||.|.+|+|.++++|+ |||+|.+.++|.+ +++..+ .+. .|+|+
T Consensus 4 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~----~~~~~~~~~g~---~l~v~ 73 (88)
T 1wf0_A 4 GSSGVF--VGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAF-AFVTFADDQIAQS----LCGEDLIIKGI---SVHIS 73 (88)
T ss_dssp CCCEEE--EESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSC-CEEECSCHHHHHH----TTTCEEEETTE---EEEEE
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCE-EEEEECCHHHHHH----HhcCCceeCCE---EEEEE
Confidence 367788 88999999999999999999999999999888887 9999999999975 455555 454 99999
Q ss_pred eecCCC
Q 020065 203 YSRHTD 208 (331)
Q Consensus 203 ~ak~~~ 208 (331)
+++.+.
T Consensus 74 ~a~~~~ 79 (88)
T 1wf0_A 74 NAEPKH 79 (88)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 987554
No 260
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5e-14 Score=108.65 Aligned_cols=72 Identities=11% Similarity=0.085 Sum_probs=63.7
Q ss_pred CCCCCCCcHHHHHHhhcc-cCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCC-cCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSA-FGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRS-IPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~-fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~-~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+++|++ ||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||.. | .|+.|+|.
T Consensus 15 ~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---------~g~~l~v~ 85 (104)
T 2dhg_A 15 GDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL---------GSKPVRLS 85 (104)
T ss_dssp ECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS---------SSSCCCCC
T ss_pred eCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc---------CCEeEEEE
Confidence 356889999999999999 99999998876 2346799999999999999999999998 7 89999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
+++.+.
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 987553
No 261
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.46 E-value=1.5e-13 Score=116.59 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=71.0
Q ss_pred CCCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 124 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
..+++|| |.||+..+++++|+++|+.||.|++|.|..+ ++|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 86 ~~~~~l~--V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~-afV~F~~~~~A~~Ai~~lng~~l~Gr---~l 159 (177)
T 2f3j_A 86 ETGAKLL--VSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT-ADVHFERRADALKAMKQYKGVPLDGR---PM 159 (177)
T ss_dssp TTCEEEE--EECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCC-EEEEESCHHHHHHHHHHSTTCBCSSS---BC
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeE-EEEEeCCHHHHHHHHHHhCCCEECCE---EE
Confidence 3466777 8899999999999999999999999998764 3566 99999999999999999999999998 99
Q ss_pred EEEeecCCCc
Q 020065 200 HISYSRHTDL 209 (331)
Q Consensus 200 ~v~~ak~~~~ 209 (331)
+|+|+.....
T Consensus 160 ~V~~a~~~~~ 169 (177)
T 2f3j_A 160 DIQLVASQID 169 (177)
T ss_dssp EEEEESSGGG
T ss_pred EEEEecCCCC
Confidence 9999976543
No 262
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=7.6e-14 Score=107.88 Aligned_cols=72 Identities=24% Similarity=0.150 Sum_probs=62.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeE-EEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHK-ITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~-i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+ |.+.. ++++++|||+|.+.++|.+|++. |+..| +|+.|+|.+
T Consensus 21 ~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~---------~gr~i~v~~ 90 (104)
T 1wg5_A 21 RGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI---------GHRYIEIFK 90 (104)
T ss_dssp ESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS---------SSSCCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh---------CCcEEEEEE
Confidence 467899999999999999999987 66654 44568999999999999999997 98877 899999999
Q ss_pred eccccc
Q 020065 78 SAHTDL 83 (331)
Q Consensus 78 s~~~~l 83 (331)
++.+++
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 887654
No 263
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=6.5e-14 Score=109.81 Aligned_cols=65 Identities=26% Similarity=0.234 Sum_probs=58.8
Q ss_pred CcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 8 LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 8 vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.++++|+++|++||+|.+|.+..+.++++|||+|.+.++|.+|++.|||..| .|++|+|.|+..+
T Consensus 38 ~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---------~gr~l~v~~a~~~ 102 (112)
T 2dit_A 38 EIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF---------GGRQITAQAWDGT 102 (112)
T ss_dssp HHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE---------TTEECEEEECCSC
T ss_pred HHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE---------CCcEEEEEEeCCC
Confidence 3578999999999999999876666788999999999999999999999988 8999999998754
No 264
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.46 E-value=1.1e-13 Score=122.54 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=68.2
Q ss_pred CCCcEEEEEeccCCCCC---------CHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcc---
Q 020065 124 PESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI--- 191 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~v---------t~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i--- 191 (331)
..+++|| |+||+..+ ++++|+++|+.||.|++|+|+..+ |+ |||+|.+.++|..|+++|||+.|
T Consensus 132 ~~~rtLf--VgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G~-AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLY--VGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-NC-GFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEE--EECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-TE-EEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceee--cCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-CE-EEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 3578888 88999888 799999999999999999998765 55 99999999999999999999999
Q ss_pred ---------cCCCceEEEEEeecCCC
Q 020065 192 ---------YDGGFCKLHISYSRHTD 208 (331)
Q Consensus 192 ---------~~~~~~~l~v~~ak~~~ 208 (331)
.++ .|+|.||+...
T Consensus 208 ~~~e~~~~~~gr---~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGT---GLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSC---CCEEEECC---
T ss_pred ccccccccCCCC---EEEEEEccCCC
Confidence 677 99999997654
No 265
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=8e-14 Score=102.60 Aligned_cols=65 Identities=22% Similarity=0.372 Sum_probs=57.6
Q ss_pred cEEEEEeccCCCCC------CHHHHHHHHccCCCeeEEEEEcc---CCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 127 NVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 127 ~~l~v~v~nl~~~v------t~~~L~~~Fs~fG~V~~v~i~~~---~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
++|| |+||+..+ ++++|+++|++||.|.+|++.+. ++|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 2 ~~l~--V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 2 SVIV--VDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGY-IFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEE--EESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCE-EEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CEEE--EeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEE-EEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4566 89999999 67999999999999999998752 3566 99999999999999999999999875
No 266
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.46 E-value=3.5e-14 Score=108.95 Aligned_cols=77 Identities=16% Similarity=0.266 Sum_probs=65.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEE----ccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~----~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.++.|| |+||+.++|+++|+++|+.||.|..+.+. ..++|+ |||+|.+.++|.+|++ |||..|.++ .|+
T Consensus 16 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~-afV~f~~~~~a~~A~~-l~g~~~~g~---~l~ 88 (101)
T 1fj7_A 16 TPFNLF--IGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKF-GYVDFESAEDLEKALE-LTGLKVFGN---EIK 88 (101)
T ss_dssp CSEEEE--EECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTE-EEEEESSHHHHHHHHH-GGGCCBTTB---CCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcE-EEEEECCHHHHHHHHh-cCCcEECCc---EEE
Confidence 356777 89999999999999999999988772221 234676 9999999999999999 999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|+|++...
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99987544
No 267
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.3e-14 Score=109.35 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.++. +..++||||+|.+.++|.+|+ .|||..| .|+.|+|.+
T Consensus 31 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~~l~V~~ 100 (114)
T 2cq4_A 31 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL---------LGVPIIVQA 100 (114)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE---------TTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe---------CCeEEEEEe
Confidence 35688999999999999999999999875 345679999999999999999 9999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8854
No 268
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.46 E-value=3.1e-14 Score=104.86 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=56.6
Q ss_pred CCCCCC------cHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc-eE
Q 020065 3 LTLSLL------KVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TL 73 (331)
Q Consensus 3 ~~~~~v------tee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~-~i 73 (331)
+.++++ |+++|+++|++||+|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .|+ +|
T Consensus 8 nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---------~g~~~l 78 (81)
T 2krb_A 8 NVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---------DKQHTF 78 (81)
T ss_dssp SCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC---------SSSSCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc---------CCceeE
Confidence 446777 8899999999999999998875 34678999999999999999999999988 788 88
Q ss_pred EEE
Q 020065 74 RIT 76 (331)
Q Consensus 74 ~v~ 76 (331)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 269
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.46 E-value=6.7e-14 Score=108.40 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=61.5
Q ss_pred CCCCCC------cHHHHHHhhcccCceeEEEEee--cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc-eE
Q 020065 3 LTLSLL------KVIFILQVFSAFGFVHKITTFE--KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC-TL 73 (331)
Q Consensus 3 ~~~~~v------tee~L~~lF~~fG~V~~i~~~~--~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~-~i 73 (331)
+.++++ |+++|+++|++||.|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .|+ +|
T Consensus 22 nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~~l 92 (105)
T 2nlw_A 22 NVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL---------DKQHTF 92 (105)
T ss_dssp SCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC---------STTCEE
T ss_pred CCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc---------CCCceE
Confidence 456677 8999999999999999998875 34678999999999999999999999988 798 99
Q ss_pred EEEeeccc
Q 020065 74 RITYSAHT 81 (331)
Q Consensus 74 ~v~~s~~~ 81 (331)
+|+++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998743
No 270
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=1.1e-13 Score=114.91 Aligned_cols=71 Identities=20% Similarity=0.133 Sum_probs=63.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+++. .+++||||+|.+.++|.+||+.|||..| .|+.|+|+|
T Consensus 45 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~ 115 (156)
T 1h2v_Z 45 GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL---------DDRIIRTDW 115 (156)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEE
Confidence 356889999999999999999999988762 3457999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++..
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 9854
No 271
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.2e-14 Score=110.04 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=62.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+ +++++||||+|.+.++|.+|++.||+ .| .|+.|+|.+
T Consensus 23 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~---------~g~~l~V~~ 92 (116)
T 2cqd_A 23 GGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II---------DGRKANVNL 92 (116)
T ss_dssp ECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC---------CCEEEEEEE
Confidence 35688999999999999999999999876 33567999999999999999999998 66 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9754
No 272
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.7e-13 Score=105.58 Aligned_cols=76 Identities=12% Similarity=0.156 Sum_probs=64.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
..++|| |.||++++|+++|+++|+.|| +++|+|..++ +|+ |||+|.+.++|.+|++ +|+..|.++ .|+
T Consensus 14 ~~~~l~--V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~i~ 85 (102)
T 1wez_A 14 TGHCVH--MRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGE-ADVEFATHEDAVAAMA-KDKANMQHR---YVE 85 (102)
T ss_dssp SSCEEE--EESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEE-EEEECSSSHHHHHHHT-TSSCCSSSS---CCE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence 356777 899999999999999999999 5588887543 445 9999999999999995 799999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|..+....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 99876443
No 273
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.5e-14 Score=107.26 Aligned_cols=68 Identities=16% Similarity=0.133 Sum_probs=59.4
Q ss_pred CCCCCCCcHHHHHHhhcccCc-eeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC-CCcCcccCCCCCCCceEEEEeec
Q 020065 2 CLTLSLLKVIFILQVFSAFGF-VHKITTFEKTAGFQALVQFSDTETASSAKNALDG-RSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~-V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng-~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+.++++|+++|+++|++||. |..+.+. +++||||+|.+.++|.+|++.||| ..| .|+.|+|.+++
T Consensus 14 ~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~---------~g~~l~v~~a~ 81 (93)
T 2cqh_A 14 GNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVEL---------HGKIMEVDYSV 81 (93)
T ss_dssp ECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEE---------TTEECEEEECC
T ss_pred eCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeE---------CCEEEEEEEcc
Confidence 467889999999999999999 6655553 346999999999999999999999 777 89999999998
Q ss_pred cc
Q 020065 80 HT 81 (331)
Q Consensus 80 ~~ 81 (331)
.+
T Consensus 82 ~~ 83 (93)
T 2cqh_A 82 SK 83 (93)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 274
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=105.24 Aligned_cols=75 Identities=19% Similarity=0.312 Sum_probs=63.6
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |.||+.++|+++|+++|+.|+. |+++.+. +|+ |||+|.+.++|.+|++.|||..|.++ .|
T Consensus 14 ~~~~l~--V~nLp~~~t~~~l~~~F~~~~~---~~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~~~g~---~l 84 (102)
T 2fc8_A 14 PSKTLF--VKGLSEDTTEETLKESFDGSVR---ARIVTDRETGSSKGF-GFVDFNSEEDAKAAKEAMEDGEIDGN---KV 84 (102)
T ss_dssp CCSSEE--EECCCTTCCHHHHHHTSTTCSE---EEEEECSSSCSEEEE-EEEECSSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCEEE--EeCCCCccCHHHHHHHhcCCeE---EEEEecCCCCCcCcE-EEEEECCHHHHHHHHHHhCCCeECCe---EE
Confidence 467788 8899999999999999998864 4443322 355 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|+|++.+.
T Consensus 85 ~V~~a~~~~ 93 (102)
T 2fc8_A 85 TLDWAKPKG 93 (102)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999997654
No 275
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.1e-13 Score=105.23 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCCC-CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLS-LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~-~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++ ++|+++|+++|++||.|.+|.+. ++||||+|.+.++|.+|++.|||..+ .|+.|+|.+++.+
T Consensus 17 nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 17 NLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMN---------FGKKLILEVSSSN 83 (96)
T ss_dssp SSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSC---------BTTTBCEEEEECC
T ss_pred CCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCee---------CCcEEEEEEcCcC
Confidence 4577 99999999999999999999885 36999999999999999999999987 7999999999865
Q ss_pred c
Q 020065 82 D 82 (331)
Q Consensus 82 ~ 82 (331)
.
T Consensus 84 ~ 84 (96)
T 2kvi_A 84 A 84 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 276
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.45 E-value=4.1e-12 Score=115.13 Aligned_cols=79 Identities=25% Similarity=0.478 Sum_probs=70.5
Q ss_pred CCCcEEEEEeccCCCCCCHHHHH----HHHccCCCeeEEEEEc--cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 124 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~vt~~~L~----~~Fs~fG~V~~v~i~~--~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
.++++|| |+||+.++|+++|+ ++|+.||.|++|++.+ +++|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 7 ~~~~~l~--V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g~--- 80 (282)
T 3pgw_A 7 RPNHTIY--INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQ-AFVIFKEVSSATNALRSMQGFPFYDK--- 80 (282)
T ss_pred CCCCEEE--EeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceE-EEEEECCHHHHHHHHHHhcCCeeCCc---
Confidence 3578888 89999999999966 9999999999999876 33566 99999999999999999999999998
Q ss_pred EEEEEeecCCC
Q 020065 198 KLHISYSRHTD 208 (331)
Q Consensus 198 ~l~v~~ak~~~ 208 (331)
.|+|+|++...
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997655
No 277
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.45 E-value=1.9e-13 Score=111.69 Aligned_cols=78 Identities=17% Similarity=0.339 Sum_probs=67.3
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE--------EEEEc--cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~--------v~i~~--~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
++++|| |+||+..+|+++|+++|+.||.|.. +++.. .++|+ |||+|.+.++|.+|++.|||..|.++
T Consensus 44 ~~~~l~--V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~-afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 44 PNCRIY--VKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQ-AFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSEEE--EEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEE-EEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccE-EEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 467888 8899999999999999999999876 33332 34566 99999999999999999999999998
Q ss_pred CceEEEEEeecCCC
Q 020065 195 GFCKLHISYSRHTD 208 (331)
Q Consensus 195 ~~~~l~v~~ak~~~ 208 (331)
.|+|+|++...
T Consensus 121 ---~l~V~~a~~~~ 131 (143)
T 3egn_A 121 ---PMVVQFARSAR 131 (143)
T ss_dssp ---ECEEEECCCSC
T ss_pred ---EEEEEECCCCC
Confidence 99999997654
No 278
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=1.9e-13 Score=105.94 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=58.4
Q ss_pred CCcHHHHHHhhcccCceeEEEEeec-----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~-----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+-++++|+++|++||+|.+|.+.+. +++|+|||+|.+.++|.+|++.|||+.| .||.|+|.|+...
T Consensus 24 dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---------~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 24 EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---------GGRVVKACFYNLD 94 (105)
T ss_dssp --CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEECCHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE---------CCcEEEEEEcCHH
Confidence 3479999999999999999988762 4578999999999999999999999998 8999999998753
No 279
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=7.2e-14 Score=108.00 Aligned_cols=72 Identities=10% Similarity=0.030 Sum_probs=63.4
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.+.++++|+++|+++|++||+|.+|.+++. .+++||||+|.+.++|.+|++. ||..| .|+.|+|.
T Consensus 21 V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~---------~g~~l~V~ 90 (105)
T 2dh8_A 21 VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL---------DGRNIDPK 90 (105)
T ss_dssp CBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE---------TTEEEBCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE---------CCEEEEEE
Confidence 3567899999999999999999999988773 3457999999999999999999 99887 89999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
+++.+.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 988653
No 280
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.45 E-value=2.1e-13 Score=117.07 Aligned_cols=79 Identities=29% Similarity=0.481 Sum_probs=72.6
Q ss_pred CcEEEEEeccCCC-CCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 126 SNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 126 ~~~l~v~v~nl~~-~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
+++|| |+||+. ++++++|+++|+.||.|.+|++.++++|+ |||+|.+.++|.+|++.|||..|.++ .|+|.|+
T Consensus 3 ~~~l~--v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~l~v~~a 76 (198)
T 1qm9_A 3 NSVLL--VSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKEN-ALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS 76 (198)
T ss_dssp CCEEE--EECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSC-CEEECTTTHHHHHHHHHHTTCCCSSC---CCEEEEC
T ss_pred CcEEE--EeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCE-EEEEECCHHHHHHHHHHhCCCeecCe---EEEEEEe
Confidence 56788 889999 99999999999999999999999888787 99999999999999999999999998 9999999
Q ss_pred cCCCcc
Q 020065 205 RHTDLS 210 (331)
Q Consensus 205 k~~~~~ 210 (331)
+.....
T Consensus 77 ~~~~~~ 82 (198)
T 1qm9_A 77 KHQNVQ 82 (198)
T ss_dssp CCCSCC
T ss_pred cCCCcC
Confidence 866533
No 281
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.45 E-value=9.6e-14 Score=108.32 Aligned_cols=67 Identities=24% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCCCCC-CcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSL-LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~-vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.+++ +|+++|+++|++||.|.+|.+ .++||||+|.+.++|.+|++.|||..| .|+.|+|.+++.
T Consensus 33 ~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~a~~ 99 (110)
T 1wf1_A 33 GNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVL---------AGQTLDINMAGE 99 (110)
T ss_dssp CSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEE---------TTEECCEEESCC
T ss_pred eCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEECCC
Confidence 356788 999999999999999999988 346999999999999999999999988 899999999874
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
.
T Consensus 100 ~ 100 (110)
T 1wf1_A 100 P 100 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 282
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.45 E-value=1.5e-13 Score=109.35 Aligned_cols=66 Identities=18% Similarity=0.301 Sum_probs=60.5
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+++|+++|+++|++||+|.+|.+.+ +++||||+|.+.++|.+|++.|||..| .|+.|+|.|++.+.
T Consensus 47 l~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~---------~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 47 EDMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQV---------ESVQLKVNIARKQP 112 (121)
T ss_dssp SSCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBC---------SSCBCEEEECCSSC
T ss_pred CCCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEEeCCCC
Confidence 5899999999999999999998864 567999999999999999999999987 89999999998653
No 283
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=6.1e-14 Score=113.84 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=68.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCC---eeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~---V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
.++|| |+||++++|+++|+++|+.||. |.+|+|..++ +|+ |||+|.+.++|.+|++ |||..|.++ .
T Consensus 44 ~~~lf--VgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~-aFV~F~~~e~a~~Al~-~~g~~l~gr---~ 116 (136)
T 2hgl_A 44 GFVVK--LRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGE-AFVELGSEDDVKMALK-KDRESMGHR---Y 116 (136)
T ss_dssp TCEEE--EESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEE-EEEECSSHHHHHHHHT-TTEEESSSS---E
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeE-EEEEECCHHHHHHHHh-cCCCEECCE---E
Confidence 56777 8999999999999999999999 8899887543 456 9999999999999999 999999999 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|.+++..+.
T Consensus 117 i~V~~a~~~e~ 127 (136)
T 2hgl_A 117 IEVFKSHRTEM 127 (136)
T ss_dssp EEEEECCHHHH
T ss_pred EEEEECChHHH
Confidence 99999876554
No 284
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3e-13 Score=105.96 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=66.0
Q ss_pred CCcEEEEEeccCCCCCC-----------HHHHHHHHccCCCeeEEEEEcc-CCCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 125 ESNVLLASIENMQYAVT-----------LDVLHMVFSAFGPVQKIAMFDK-NGGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt-----------~~~L~~~Fs~fG~V~~v~i~~~-~~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
++++|+ |.||....+ +++|+++|++||.|.+|.|..+ ++|+ |||+|.+.++|.+|++.|||..|.
T Consensus 14 ~s~~l~--l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~-afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 14 HERVVI--IKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGV-ASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp SCCEEE--EESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCE-EEEECSCHHHHHHHHHHSTTCEET
T ss_pred CceEEE--EEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEE-EEEEECCHHHHHHHHHHcCCCEEC
Confidence 478888 889854432 5899999999999999987643 3676 999999999999999999999999
Q ss_pred CCCceEEEEEeecCCC
Q 020065 193 DGGFCKLHISYSRHTD 208 (331)
Q Consensus 193 ~~~~~~l~v~~ak~~~ 208 (331)
++ .|+|+|++...
T Consensus 91 gr---~l~v~~a~~~~ 103 (112)
T 2dit_A 91 GR---QITAQAWDGTT 103 (112)
T ss_dssp TE---ECEEEECCSCC
T ss_pred Cc---EEEEEEeCCCC
Confidence 88 99999987543
No 285
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.1e-13 Score=106.52 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=61.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++|| |.+|.+++. .+++||||+|.+.++|.+|+ .|||..| .|+.|+|.+
T Consensus 21 ~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~~l~V~~ 89 (103)
T 2dng_A 21 GNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL---------GDRSLRVDI 89 (103)
T ss_dssp ESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE---------CCeEEEEEE
Confidence 46789999999999999997 999988762 34679999999999999999 8999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8855
No 286
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-13 Score=104.90 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=57.0
Q ss_pred CCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 5 LSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 5 ~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
..++|+++|+++|++||+|.+|.+.+ ++++||||+|.+.++|.+|++.+++ + .+++|+|.|++.+
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~---------~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--L---------VDNPLKISWLEGQ 90 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--C---------SSSBCEEECSSCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--C---------CCCeEEEEEccCC
Confidence 36799999999999999999998885 4667999999999999999998665 3 6899999998754
No 287
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.44 E-value=7.1e-14 Score=107.23 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=61.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec-----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~-----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.++++|+++|+++|+.|| |.+|.+.+. +++++|||+|.+.++|.+|+ .|||..| .|+.|+|.
T Consensus 25 ~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~---------~g~~l~V~ 93 (100)
T 2j76_E 25 GNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---------GNRRIRVD 93 (100)
T ss_dssp SCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---------TTBCCCCE
T ss_pred eCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---------CCeEEEEE
Confidence 45688999999999999999 999988753 24679999999999999999 8999988 89999999
Q ss_pred eeccc
Q 020065 77 YSAHT 81 (331)
Q Consensus 77 ~s~~~ 81 (331)
+++.+
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98754
No 288
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.44 E-value=1.1e-13 Score=114.11 Aligned_cols=69 Identities=22% Similarity=0.266 Sum_probs=63.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++++|+++|+++|++||.|.+|.+.++ +++||||+|.+.++|.+|++.|||..| .|+.|+|.|++.+
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTL---------CGCRVRVELSNGE 148 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCS---------SSSCCEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEE---------CCeEEEEEEcCCC
Confidence 56889999999999999999999998875 467999999999999999999999987 8999999998754
No 289
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=2.8e-14 Score=107.07 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||+|.+|.+.+ ++++++|||+|.+.+ |.+|++.|||..+ .|+.|+|++|
T Consensus 8 nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~---------~g~~l~V~~a 77 (90)
T 2ki2_A 8 NLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF---------MGRTIRVTEA 77 (90)
T ss_dssp EECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC---------SSSSCSEEEC
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE---------CCeEEEEEEc
Confidence 4578999999999999999999998876 345789999999999 9999999999988 8999999998
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
..+.
T Consensus 78 ~~~~ 81 (90)
T 2ki2_A 78 NPKK 81 (90)
T ss_dssp ----
T ss_pred CCCC
Confidence 8653
No 290
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7.3e-14 Score=101.51 Aligned_cols=67 Identities=13% Similarity=0.040 Sum_probs=59.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||+|.+|.+.+ ++++++|||+|.+.++|.+|++.++ ..+ .|+.|+|.+
T Consensus 6 ~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~---------~g~~l~v~~ 75 (77)
T 1uaw_A 6 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL---------DSKTIDPKV 75 (77)
T ss_dssp ESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC---------SSCCCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc---------CCEEEEEEe
Confidence 45689999999999999999999998876 3356899999999999999999999 766 899999988
Q ss_pred e
Q 020065 78 S 78 (331)
Q Consensus 78 s 78 (331)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 291
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.44 E-value=4.1e-14 Score=112.07 Aligned_cols=72 Identities=14% Similarity=0.068 Sum_probs=63.5
Q ss_pred CCCCCCCcHHHHHHhhcccCc---eeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~---V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
.+.++++|+++|+++|+.||. |.+|.+.+ ++++++|||+|.+.++|.+|++ |||..| .|+.|+|
T Consensus 23 ~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~gr~i~V 92 (118)
T 2db1_A 23 RGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM---------GHRYIEV 92 (118)
T ss_dssp ESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE---------TTEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE---------CCeEEEE
Confidence 467899999999999999999 88888775 3456799999999999999999 999887 8999999
Q ss_pred Eeeccccc
Q 020065 76 TYSAHTDL 83 (331)
Q Consensus 76 ~~s~~~~l 83 (331)
.+++.++.
T Consensus 93 ~~a~~~~~ 100 (118)
T 2db1_A 93 FKSHRTEM 100 (118)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99986654
No 292
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=106.76 Aligned_cols=71 Identities=13% Similarity=0.017 Sum_probs=61.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||+|.+|.+.+ +.+++||||+|.+.++|.+|++.+ |..| .|+.|+|.+
T Consensus 31 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l---------~g~~l~V~~ 100 (109)
T 2rs2_A 31 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL---------DSKTIDPKV 100 (109)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE---------TTEEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC---------CCEEEEEEE
Confidence 35688999999999999999999998876 345789999999999999999976 4666 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
+..+.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 88653
No 293
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.2e-13 Score=108.71 Aligned_cols=71 Identities=13% Similarity=0.040 Sum_probs=63.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+++ +.+++||||+|.+.++|.+||+. ||..| .|+.|+|.+
T Consensus 33 ~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~---------~g~~l~V~~ 102 (116)
T 1x4b_A 33 GGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI---------DGRVVEPKR 102 (116)
T ss_dssp ECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE---------TTEEEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE---------CCEEEEEEE
Confidence 46689999999999999999999998876 34567999999999999999998 98887 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
++.+.
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 98653
No 294
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=105.49 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=61.1
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeec-----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEK-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~-----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
+.++++|+++|+++|+.|| |.+|.+.+. .+++||||+|.+.++|.+|+ .|||..| .|+.|+|.+
T Consensus 22 nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~~l~V~~ 90 (104)
T 1wi8_A 22 NLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL---------GNKRIRVDV 90 (104)
T ss_dssp SCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE---------TTEECEEEE
T ss_pred CCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe---------CCcEEEEEE
Confidence 5688999999999999999 999988752 34679999999999999999 9999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 9865
No 295
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.43 E-value=1.2e-13 Score=114.61 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 76 ~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~ 146 (158)
T 2kn4_A 76 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------DGRELRVQM 146 (158)
T ss_dssp ESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES---------SSSEEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEE
Confidence 35688999999999999999999998876 34678999999999999999999999987 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 147 a~~~ 150 (158)
T 2kn4_A 147 ARYG 150 (158)
T ss_dssp ECCS
T ss_pred CCCC
Confidence 9865
No 296
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=1.3e-13 Score=109.87 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=61.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|+ .|||..| .|+.|+|.++
T Consensus 43 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~---------~g~~l~V~~a 112 (124)
T 2jwn_A 43 NVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF---------RGRTIKVLPK 112 (124)
T ss_dssp EECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE---------TTEECEEEES
T ss_pred CCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE---------CCeEEEEEEC
Confidence 4578999999999999999999998876 345789999999999999999 7999988 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+..
T Consensus 113 ~~~ 115 (124)
T 2jwn_A 113 RTN 115 (124)
T ss_dssp SCC
T ss_pred CCC
Confidence 754
No 297
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.6e-14 Score=111.72 Aligned_cols=76 Identities=5% Similarity=0.060 Sum_probs=65.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEE-EEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~-i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
..+|| |.||++++|+++|+++|+.||.|.+++ +..+ ++|+ |||+|.+.++|.+||+ |||..|.++ .|+
T Consensus 25 ~~~l~--V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~g~~~~gr---~i~ 97 (124)
T 1wel_A 25 GFCVY--LKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGE-GFVEFRNEADYKAALC-RHKQYMGNR---FIQ 97 (124)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEE-EEEEBSSSHHHHHHHT-SCSBCSTTS---CBE
T ss_pred CcEEE--EeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeE-EEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence 56777 899999999999999999999998743 3322 2455 9999999999999999 999999999 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|.+++.++
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997655
No 298
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=7.8e-14 Score=100.90 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=61.2
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
|+|+||+.++|+++|+++|+.||.|.++.+..+ ++|+ |||+|.+.++|.+|++. ++..|.|+ .|+|++|
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~a 75 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF-CFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA 75 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCC-EEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCE-EEEEECCHHHHHHHHHh-CCCeECCE---EEEEEEC
Confidence 349999999999999999999999999988653 2566 99999999999999995 88999998 8888875
No 299
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.43 E-value=9e-14 Score=112.77 Aligned_cols=71 Identities=23% Similarity=0.210 Sum_probs=63.9
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .|+.|+|.+
T Consensus 53 ~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---------~g~~l~V~~ 123 (135)
T 2lea_A 53 DNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---------DGRELRVQM 123 (135)
T ss_dssp ECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS---------SSSCCEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE---------CCEEEEEEE
Confidence 35688999999999999999999998875 34677999999999999999999999988 899999999
Q ss_pred eccc
Q 020065 78 SAHT 81 (331)
Q Consensus 78 s~~~ 81 (331)
++.+
T Consensus 124 a~~~ 127 (135)
T 2lea_A 124 ARYG 127 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9865
No 300
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-14 Score=114.78 Aligned_cols=78 Identities=17% Similarity=0.376 Sum_probs=68.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeE--------EEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCI 191 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~--------v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i 191 (331)
++++|| |.||+.++++++|+++|+.||.|.+ |+|..+ ++|+ |||+|.+.++|.+|++.|||..|
T Consensus 6 ~~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 6 DNNTIF--VQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGE-ATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 356777 8999999999999999999999998 777654 2566 99999999999999999999999
Q ss_pred cCCCceEEEEEeecCCC
Q 020065 192 YDGGFCKLHISYSRHTD 208 (331)
Q Consensus 192 ~~~~~~~l~v~~ak~~~ 208 (331)
.++ .|+|+|++.+.
T Consensus 83 ~g~---~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGN---PIKVSFATRRA 96 (116)
Confidence 998 99999987554
No 301
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=102.86 Aligned_cols=69 Identities=10% Similarity=0.027 Sum_probs=61.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|+.| .|.+|.+++ ++++++|||+|.+.++|.+|++ |||..| .|+.|+|.++
T Consensus 16 ~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~---------~gr~i~v~~a 84 (91)
T 2dgw_A 16 RGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM---------GGRYIEVFRE 84 (91)
T ss_dssp ECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE---------TTEEEEEEEE
T ss_pred ECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee---------CCcEEEEEEC
Confidence 3568999999999999999 999998876 3346799999999999999999 999988 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
+.+
T Consensus 85 ~~~ 87 (91)
T 2dgw_A 85 KSG 87 (91)
T ss_dssp SSC
T ss_pred CcC
Confidence 855
No 302
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1e-13 Score=106.37 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=59.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||.|.-+....++.++||||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 21 ~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 21 SNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI---------EGRAIRLELQGPR 91 (101)
T ss_dssp ESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE---------TTEEEEEEECSSC
T ss_pred eCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe---------CCeEEEEEEcCCC
Confidence 3568899999999999999998322111244677999999999999999999999988 7999999999865
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.8e-14 Score=113.91 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=61.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEE-EEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKI-TTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i-~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|+.||.|.++ ++.. +++++||||+|.+.++|.+||+ |||..| .|+.|+|.+
T Consensus 31 ~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~---------~gr~i~V~~ 100 (124)
T 1wel_A 31 KGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM---------GNRFIQVHP 100 (124)
T ss_dssp ECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS---------TTSCBEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE---------CCcEEEEEE
Confidence 4678999999999999999999873 3333 3456899999999999999999 999887 899999999
Q ss_pred eccccc
Q 020065 78 SAHTDL 83 (331)
Q Consensus 78 s~~~~l 83 (331)
++.++.
T Consensus 101 a~~~~~ 106 (124)
T 1wel_A 101 ITKKGM 106 (124)
T ss_dssp ECHHHH
T ss_pred CCHHHH
Confidence 987653
No 304
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.4e-13 Score=103.06 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=60.1
Q ss_pred CCCCCCcHHHHHHhhccc--CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 3 LTLSLLKVIFILQVFSAF--GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~f--G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.++++|+++|+++|++| |.|.+|.+.+ +||||+|.+.++|.+|++.|||..| .|+.|+|.+++.
T Consensus 22 nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~v~~a~~ 88 (99)
T 2cpd_A 22 NLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVL---------DGSPIEVTLAKP 88 (99)
T ss_dssp SCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEE---------TTEEEEEECCCC
T ss_pred CCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEe---------CCcEEEEEECCC
Confidence 467899999999999999 9999987653 5999999999999999999999988 899999999986
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
+
T Consensus 89 ~ 89 (99)
T 2cpd_A 89 V 89 (99)
T ss_dssp C
T ss_pred C
Confidence 5
No 305
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=110.69 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=60.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||+|.+|.+.+ +++++||||+|.+.++|.+|++.|||..| .|+.|+|.+|
T Consensus 70 nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~A 140 (140)
T 2ku7_A 70 GLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL---------FGRTIRVNLA 140 (140)
T ss_dssp CCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE---------TTEEEEEEC-
T ss_pred eCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEeC
Confidence 4678999999999999999999998876 34678999999999999999999999988 8999999985
No 306
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.3e-13 Score=104.62 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=65.6
Q ss_pred CCcEEEEEeccCCC--CCC--------HHHHHHHHccCCCeeEEEEEcc-------CCCeeEEEEcCCHHHHHHHHHHhc
Q 020065 125 ESNVLLASIENMQY--AVT--------LDVLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAKEALE 187 (331)
Q Consensus 125 ~~~~l~v~v~nl~~--~vt--------~~~L~~~Fs~fG~V~~v~i~~~-------~~g~~afV~f~~~~~A~~Ai~~ln 187 (331)
++++|. +.|+-. .+. +++|+++|++||.|++|+|.+. ++|+ |||+|.+.++|.+|++.||
T Consensus 4 ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~-~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 4 PTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK-IFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp CCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTE-EEEEESSHHHHHHHHHHHT
T ss_pred CCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEE-EEEEECCHHHHHHHHHHhC
Confidence 588888 778733 332 3689999999999999999764 3566 9999999999999999999
Q ss_pred CCcccCCCceEEEEEeecCCC
Q 020065 188 GHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 188 g~~i~~~~~~~l~v~~ak~~~ 208 (331)
|+.+.|+ .|+|+|+....
T Consensus 81 G~~f~GR---~i~v~~~~~~~ 98 (105)
T 3v4m_A 81 GRKFANR---VVVTKYCDPDS 98 (105)
T ss_dssp TCEETTE---ECEEEEECHHH
T ss_pred CCEeCCC---EEEEEEeCHHH
Confidence 9999998 99999986543
No 307
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.42 E-value=8e-14 Score=108.35 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=68.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCC---eeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~---V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
..+|| |+||++++|+++|+++|+.||. |.+|+|..+ ++|+ |||+|.+.++|.+|++ |||..|.++ .
T Consensus 11 ~~~l~--V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~-afV~F~~~~~a~~Al~-~~~~~~~gr---~ 83 (107)
T 2lmi_A 11 VFLIR--AQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGD-ALIEMESEQDVQKALE-KHRMYMGQR---Y 83 (107)
T ss_dssp CCEEE--EECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSE-EEEEBSSHHHHHHHHT-TTTCCSSSS---C
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHH-hCcceeCCe---E
Confidence 56677 8999999999999999999998 899988754 3566 9999999999999999 999999998 9
Q ss_pred EEEEeecCCCc
Q 020065 199 LHISYSRHTDL 209 (331)
Q Consensus 199 l~v~~ak~~~~ 209 (331)
|+|.+++..+.
T Consensus 84 i~V~~a~~~~~ 94 (107)
T 2lmi_A 84 VEVYEINNEDV 94 (107)
T ss_dssp CCCEECCHHHH
T ss_pred EEEEECCHHHH
Confidence 99999876553
No 308
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.42 E-value=4e-13 Score=111.83 Aligned_cols=77 Identities=21% Similarity=0.381 Sum_probs=69.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|+ |+||+.++|+++|+++|+.||.|.+|++.++. +|+ |||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 3 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 76 (168)
T 1b7f_A 3 NTNLI--VNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGY-AFVDFTSEMDSQRAIKVLNGITVRNK---RLK 76 (168)
T ss_dssp CSEEE--EECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred ccEEE--EeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceE-EEEEECCHHHHHHHHHhcCCCEeCCc---EEE
Confidence 67788 88999999999999999999999999987643 366 99999999999999999999999988 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|.|++...
T Consensus 77 v~~~~~~~ 84 (168)
T 1b7f_A 77 VSYARPGG 84 (168)
T ss_dssp EEECCCCS
T ss_pred EEecCCCc
Confidence 99987544
No 309
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=1.5e-13 Score=106.51 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=58.4
Q ss_pred CCcHHHHHHhhcccCceeEEEEeec------CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEK------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~------~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
+.++++|+++|++||+|.+|.+.+. +++++|||+|.+.++|.+|++.|||+.| .||.|+|.|+..
T Consensus 26 ~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f---------~GR~i~v~~~~~ 96 (105)
T 3v4m_A 26 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF---------ANRVVVTKYCDP 96 (105)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEECH
T ss_pred HHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe---------CCCEEEEEEeCH
Confidence 3456899999999999999998762 3568999999999999999999999998 899999999874
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
.
T Consensus 97 ~ 97 (105)
T 3v4m_A 97 D 97 (105)
T ss_dssp H
T ss_pred H
Confidence 4
No 310
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.4e-13 Score=105.75 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=62.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|+.||+|.+|.+.+. .+++||||+|.+.++|.+|++.|||..|.-..+- ...+++|+|.|+
T Consensus 31 ~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~-~~~~~~l~v~~a 109 (114)
T 1x5o_A 31 SNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV-SAPTEPLLCKFS 109 (114)
T ss_dssp ESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS-CCCSSCBEEEEC
T ss_pred eCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc-cCCCCceeEEcc
Confidence 356889999999999999999999988763 3467999999999999999999999987210000 014788999988
Q ss_pred cc
Q 020065 79 AH 80 (331)
Q Consensus 79 ~~ 80 (331)
..
T Consensus 110 ~p 111 (114)
T 1x5o_A 110 GP 111 (114)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 311
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.7e-13 Score=106.55 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=62.0
Q ss_pred CCCCCCCcHHHHHHhhcccCc-eeEEEEe-e----cCCCceEEEEeCCHHHHHHHHHHhC--CCCcCcccCCCCCCCceE
Q 020065 2 CLTLSLLKVIFILQVFSAFGF-VHKITTF-E----KTAGFQALVQFSDTETASSAKNALD--GRSIPRYLLPENMGPCTL 73 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~-V~~i~~~-~----~~~~~~aFV~f~~~e~A~~Av~~ln--g~~~~~~~~~~~~~g~~i 73 (331)
.+.++++|+++|+++|++||. |.+|.+. + +.+++||||+|.+.++|.+|++.|| +..| .|+.|
T Consensus 14 ~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~---------~g~~l 84 (109)
T 2dis_A 14 GGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL---------WGHQI 84 (109)
T ss_dssp ECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB---------TTBCC
T ss_pred eCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee---------cCCeE
Confidence 356789999999999999999 9999887 2 2467899999999999999999996 4666 89999
Q ss_pred EEEeeccc
Q 020065 74 RITYSAHT 81 (331)
Q Consensus 74 ~v~~s~~~ 81 (331)
+|.|++.+
T Consensus 85 ~V~~a~~~ 92 (109)
T 2dis_A 85 AVDWAEPE 92 (109)
T ss_dssp EEEESCSS
T ss_pred EEEEcCCC
Confidence 99999855
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.42 E-value=1.1e-13 Score=105.11 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=61.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|+.||.|..+ ...+.++++|||+|.+.++|.+|++.|||..| .|+.|+|.+++.+
T Consensus 22 ~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---------~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 22 KNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSVSLYYTGEK 91 (96)
T ss_dssp ESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE---------TTEEEEEEECSSS
T ss_pred eCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEEcCCC
Confidence 3568899999999999999999877 33345667999999999999999999999888 8999999998754
No 313
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=7.3e-14 Score=113.37 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=63.2
Q ss_pred CCCCCCCcHHHHHHhhcccCc---eeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~---V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
.+.+|++|+++|+++|+.||. |.+|.+.+ ++++++|||+|.+.++|.+|++ |||..| .|+.|+|
T Consensus 50 gnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l---------~gr~i~V 119 (136)
T 2hgl_A 50 RGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM---------GHRYIEV 119 (136)
T ss_dssp ESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES---------SSSEEEE
T ss_pred eCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE---------CCEEEEE
Confidence 367899999999999999999 78887775 3456799999999999999999 999887 8999999
Q ss_pred Eeeccccc
Q 020065 76 TYSAHTDL 83 (331)
Q Consensus 76 ~~s~~~~l 83 (331)
.+++.++.
T Consensus 120 ~~a~~~e~ 127 (136)
T 2hgl_A 120 FKSHRTEM 127 (136)
T ss_dssp EECCHHHH
T ss_pred EECChHHH
Confidence 99886654
No 314
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.41 E-value=6.2e-13 Score=110.35 Aligned_cols=77 Identities=18% Similarity=0.378 Sum_probs=69.1
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|+ |+||+.++|+++|+++|+.||.|.++++.++. +|+ |||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 2 ~~~l~--v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 75 (167)
T 1fxl_A 2 KTNLI--VNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGY-GFVNYIDPKDAEKAINTLNGLRLQTK---TIK 75 (167)
T ss_dssp CSEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred cceEE--EcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeE-EEEEECCHHHHHHHHHHcCCCccCCc---eEE
Confidence 56777 88999999999999999999999999987754 245 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|.|++...
T Consensus 76 v~~~~~~~ 83 (167)
T 1fxl_A 76 VSYARPSS 83 (167)
T ss_dssp EEECCCCC
T ss_pred EEecCCCc
Confidence 99987554
No 315
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.41 E-value=2.8e-13 Score=101.32 Aligned_cols=69 Identities=12% Similarity=-0.002 Sum_probs=61.9
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|++| .|.++.+. +++++|||+|.+.++|.+|++.|||..+ .|++|+|+++..+.
T Consensus 12 nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~---------~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 12 NLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSF---------RGKDLIVQLQPTDA 79 (88)
T ss_dssp SCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEE---------TTEEEEEEECCCCC
T ss_pred CCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeE---------CCcEEEEEEcCCCc
Confidence 567899999999999999 99999885 3567999999999999999999999988 89999999998654
Q ss_pred c
Q 020065 83 L 83 (331)
Q Consensus 83 l 83 (331)
+
T Consensus 80 ~ 80 (88)
T 1wg1_A 80 L 80 (88)
T ss_dssp C
T ss_pred e
Confidence 3
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=103.51 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=59.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++|+++|+++|++||.|.+|.+.+...+ ||||+|.+.++|.+|++ |||..| .|+.|+|.++..+
T Consensus 14 ~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~---------~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 14 SGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSL---------GGHRLRVRPREQK 82 (94)
T ss_dssp ECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEE---------TTEECCCBCSCCS
T ss_pred ECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEE---------CCEEEEEEECCcC
Confidence 356899999999999999999999833333333 99999999999999999 999988 8999999987654
Q ss_pred c
Q 020065 82 D 82 (331)
Q Consensus 82 ~ 82 (331)
.
T Consensus 83 ~ 83 (94)
T 2e5g_A 83 E 83 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 317
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.41 E-value=2.4e-13 Score=101.23 Aligned_cols=66 Identities=11% Similarity=-0.012 Sum_probs=57.8
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.+|.+.+ ++++++|||+|.+.++|.+|++ +++..| .|+.|+|.+|
T Consensus 18 nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~g~~i~v~~A 87 (87)
T 3s7r_A 18 GLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL---------DGRVIDPKKA 87 (87)
T ss_dssp CCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE---------TTEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE---------CCEEEEEEeC
Confidence 5688999999999999999999998876 3346799999999999999996 477776 8999999875
No 318
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.9e-13 Score=105.42 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=59.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.+|++|+++|+++|+.||.| +|.+++ ++++++|||+|.+.++|.+||+ +|+..| .++.|+|..+
T Consensus 21 ~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---------~gr~i~V~~~ 89 (102)
T 1wez_A 21 RGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANM---------QHRYVELFLN 89 (102)
T ss_dssp ESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCS---------SSSCCEEEEE
T ss_pred eCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeE---------CCcEEEEEEC
Confidence 3678999999999999999955 887765 3456799999999999999995 799877 8999999988
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+..+
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7553
No 319
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.41 E-value=5e-13 Score=116.53 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=69.0
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
++++|| |+||+.++|+++|+++|++||.|++|+|.++. +|+ |||+|.+.++|.+|++.||+..+.++ .|
T Consensus 14 p~~tlf--VgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~-afV~F~~~~~A~~Ai~~~~~~~~~g~---~i 87 (213)
T 4f02_A 14 PMASLY--VGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGY-AYVNFQQPADAERALDTMNFDVIKGK---PV 87 (213)
T ss_dssp -CCEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCcEEE--EeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcccc-ccceeCCHHHHHHHHHHhhhhhcCCc---cc
Confidence 467888 89999999999999999999999999987642 455 99999999999999999999999998 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
++.++....
T Consensus 88 ~~~~~~~~~ 96 (213)
T 4f02_A 88 RIMWSQRDP 96 (213)
T ss_dssp EEEECCCCT
T ss_pred ccccccccc
Confidence 999986543
No 320
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.41 E-value=3.2e-13 Score=106.13 Aligned_cols=68 Identities=19% Similarity=0.106 Sum_probs=60.4
Q ss_pred CCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 6 SLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 6 ~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
|+-.++||+++|++||.|.+|.+.+...+|+|||+|.+.++|.+|++.|||+.| .||.|+|+|+....
T Consensus 27 ~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f---------~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 27 DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF---------AGKMITAAYVPLPT 94 (114)
T ss_dssp HHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEEECHHH
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEEEcHHH
Confidence 344578999999999999999998765678999999999999999999999988 89999999997543
No 321
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=2.3e-13 Score=107.23 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=57.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCce-----EEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCT-----LRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~-----i~v~ 76 (331)
.+.++++|+++|+++|++||+|.+|.+++. +||||+|.+.++|.+||+.|||+.| .|+. |+|.
T Consensus 22 ~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~---------~gr~~~~~~i~v~ 89 (115)
T 3beg_B 22 SGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKF---------RSHEGETAYIRVK 89 (115)
T ss_dssp EECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBC---------CCTTSCCCBCEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEE---------CCcEeeeEEEEec
Confidence 356899999999999999999999988764 6999999999999999999999988 7888 5555
Q ss_pred eec
Q 020065 77 YSA 79 (331)
Q Consensus 77 ~s~ 79 (331)
.+.
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 444
No 322
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.41 E-value=6.1e-14 Score=107.62 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=59.8
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+.++++|+++|+++|+.||.|.++++.. +.+++||||+|.+.++|.+|++ |||..| .|+.|+|.+++
T Consensus 24 nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~---------~g~~l~V~~a~ 93 (101)
T 1fj7_A 24 NLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV---------FGNEIKLEKPK 93 (101)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB---------TTBCCEEECCS
T ss_pred CCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE---------CCcEEEEEEcC
Confidence 5688999999999999999987732222 4567899999999999999998 999988 79999999998
Q ss_pred cc
Q 020065 80 HT 81 (331)
Q Consensus 80 ~~ 81 (331)
.+
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 323
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.6e-13 Score=106.13 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=52.5
Q ss_pred cHHHHHHhh-cccCceeEEEEeec---CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 9 KVIFILQVF-SAFGFVHKITTFEK---TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 9 tee~L~~lF-~~fG~V~~i~~~~~---~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+++|++.| ++||+|.+|.+.+. +++|+|||+|.+.++|.+|++.|||+.+ .||.|+|+|+
T Consensus 39 ~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~---------~Gr~i~v~~s 103 (104)
T 1jmt_A 39 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF---------NGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE---------TTEECCEEEC
T ss_pred HHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE---------CCEEEEEEEc
Confidence 344555556 99999999999873 3578999999999999999999999988 8999999986
No 324
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.40 E-value=3.9e-13 Score=99.98 Aligned_cols=69 Identities=22% Similarity=0.421 Sum_probs=63.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccC----C-------CeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~f----G-------~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+++|| |+||+.++|+++|+++|+.| | .|.++++.+.+ |+ |||+|.+.++|.+|+ .|||..|.++
T Consensus 6 ~~~l~--V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g~-afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 6 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-SE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-cE-EEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 56788 89999999999999999999 8 99999988764 55 999999999999999 9999999998
Q ss_pred CceEEEEE
Q 020065 195 GFCKLHIS 202 (331)
Q Consensus 195 ~~~~l~v~ 202 (331)
.|+|+
T Consensus 81 ---~l~V~ 85 (87)
T 2hzc_A 81 ---SLKIR 85 (87)
T ss_dssp ---ECEEE
T ss_pred ---EEEEe
Confidence 88886
No 325
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-13 Score=111.48 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=62.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeE--EEEee----cCCCceEEEEeCCHHHHHHHHHHhCCC----CcCcccCCCCCCCc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHK--ITTFE----KTAGFQALVQFSDTETASSAKNALDGR----SIPRYLLPENMGPC 71 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~--i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~----~~~~~~~~~~~~g~ 71 (331)
-+.++++|+++|+++|++||.|.. |.+++ +++++||||+|.+. +|.+|++.|||. .| .|+
T Consensus 29 ~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~---------~gr 98 (131)
T 2m2b_A 29 RNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI---------DGK 98 (131)
T ss_dssp CSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG---------GGC
T ss_pred eCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC---------CCE
Confidence 357899999999999999999965 77765 34678999999999 999999999998 76 899
Q ss_pred eEEEEeecccc
Q 020065 72 TLRITYSAHTD 82 (331)
Q Consensus 72 ~i~v~~s~~~~ 82 (331)
.|+|.+++.++
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998653
No 326
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.6e-13 Score=107.90 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=62.6
Q ss_pred CCCCCCcHHHHHHhhcccCce-eEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFV-HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V-~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|+.||.| .+|.+++ +++++||||+|.+.++|.+||+. ||..| .|+.|+|.++
T Consensus 22 nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~---------~gr~i~v~~a 91 (114)
T 2cpy_A 22 NIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL---------NGREAFVHVV 91 (114)
T ss_dssp SCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE---------TTEEEEEEEE
T ss_pred CcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc---------CCeEEEEEEC
Confidence 578999999999999999999 7787765 44678999999999999999987 99887 8999999999
Q ss_pred ccccc
Q 020065 79 AHTDL 83 (331)
Q Consensus 79 ~~~~l 83 (331)
+.++.
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 86653
No 327
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.8e-13 Score=102.94 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=60.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++ ++..| .|+.|+|.+
T Consensus 21 ~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~---------~g~~l~v~~ 89 (103)
T 2cqg_A 21 LGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMI---------DGRWCDCKL 89 (103)
T ss_dssp ESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEE---------TTEEEEEEC
T ss_pred EcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCee---------CCeEEEEEe
Confidence 46789999999999999999999998876 3346799999999999999998 46555 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
+..+.
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98653
No 328
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=4.1e-13 Score=112.52 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=64.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeec----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEK----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+. .+++||||+|.+.++|.+||+.|||..| .|+.|+|.|
T Consensus 78 ~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~g~~l~V~~ 148 (165)
T 1rk8_A 78 TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---------MGQTIQVDW 148 (165)
T ss_dssp ESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEE
T ss_pred eCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE---------CCEEEEEEE
Confidence 356789999999999999999999988762 2467999999999999999999999988 899999999
Q ss_pred ecccc
Q 020065 78 SAHTD 82 (331)
Q Consensus 78 s~~~~ 82 (331)
+..+.
T Consensus 149 a~~~~ 153 (165)
T 1rk8_A 149 CFVKG 153 (165)
T ss_dssp SEECC
T ss_pred ecCCC
Confidence 98653
No 329
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.9e-13 Score=103.12 Aligned_cols=75 Identities=12% Similarity=0.210 Sum_probs=65.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
..+|+ |.||++++|+++|+++|+.| .|.+|+|..+ ++|+ |||+|.+.++|.+|+ .|||..|.++ .|+|
T Consensus 16 ~~~v~--V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~-afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V 87 (109)
T 2dnn_A 16 DLYVS--VHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGN-GLVKFLSPQDTFEAL-KRNRMLMIQR---YVEV 87 (109)
T ss_dssp HHEEE--EECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSE-EEEECSSHHHHHHHH-HTTTEEETTE---EEEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeE-EEEEECCHHHHHHHH-hcCCCeECCe---EEEE
Confidence 34666 99999999999999999999 8999998753 3577 999999999999999 6999999998 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
..++...
T Consensus 88 ~~a~~~~ 94 (109)
T 2dnn_A 88 SPATERQ 94 (109)
T ss_dssp EECCHHH
T ss_pred EECCccc
Confidence 8875443
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.39 E-value=2.3e-13 Score=120.26 Aligned_cols=71 Identities=14% Similarity=0.014 Sum_probs=64.1
Q ss_pred CCCCCCcHHHHHHhhcccC--ceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 3 LTLSLLKVIFILQVFSAFG--FVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG--~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+.++++|+++|+++|++|| +|.+|.|++ +++++||||+|.+.++|.+||+.|||+.| .|+.|+|.
T Consensus 75 nL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~---------~Gr~l~V~ 145 (229)
T 3q2s_C 75 NLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL---------HGQNPVVT 145 (229)
T ss_dssp SCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB---------TTBCCEEE
T ss_pred CCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE---------CCEEeEEE
Confidence 5689999999999999999 999998876 34578999999999999999999999988 89999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
+++.+.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 998653
No 331
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=4.9e-13 Score=100.39 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=56.8
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+.++++||++|+++|++||+|.+|.+.++ ++|||||+|.+.++|.+ |+|..+. +.|+.|+|.++..+
T Consensus 17 ~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~-------~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 17 GRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI-------IKGISVHISNAEPK 84 (89)
T ss_dssp ESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE-------ETTEEEEEEECC--
T ss_pred eCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc-------cCCEEEEEEEcCCC
Confidence 467899999999999999999999988875 56799999999999983 6776653 37999999998754
No 332
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.2e-13 Score=103.73 Aligned_cols=70 Identities=9% Similarity=-0.021 Sum_probs=61.5
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.+|++|+++|+++|+.| .|.+|.+.+ ++++++|||+|.+.++|.+|+ .|||..| +||.|+|..+
T Consensus 22 ~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~---------~gr~i~V~~a 90 (109)
T 2dnn_A 22 HGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM---------IQRYVEVSPA 90 (109)
T ss_dssp ECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE---------TTEEEEEEEC
T ss_pred eCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE---------CCeEEEEEEC
Confidence 4678999999999999999 899998875 446789999999999999999 6999887 8999999888
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
+.++
T Consensus 91 ~~~~ 94 (109)
T 2dnn_A 91 TERQ 94 (109)
T ss_dssp CHHH
T ss_pred Cccc
Confidence 7543
No 333
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.38 E-value=9.2e-14 Score=107.99 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=63.2
Q ss_pred CCCCCCCcHHHHHHhhcccCc---eeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGF---VHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRI 75 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~---V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v 75 (331)
.+.++++|+++|+++|+.||. |.+|.+.+ ++++++|||+|.+.++|.+|++ |||..| +|+.|+|
T Consensus 17 ~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~---------~gr~i~V 86 (107)
T 2lmi_A 17 QGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM---------GQRYVEV 86 (107)
T ss_dssp ECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS---------SSSCCCC
T ss_pred eCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee---------CCeEEEE
Confidence 367899999999999999998 88888775 3467799999999999999999 999877 8999999
Q ss_pred Eeeccccc
Q 020065 76 TYSAHTDL 83 (331)
Q Consensus 76 ~~s~~~~l 83 (331)
.+++.+++
T Consensus 87 ~~a~~~~~ 94 (107)
T 2lmi_A 87 YEINNEDV 94 (107)
T ss_dssp EECCHHHH
T ss_pred EECCHHHH
Confidence 99886653
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.38 E-value=1.9e-13 Score=98.82 Aligned_cols=67 Identities=15% Similarity=0.078 Sum_probs=58.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
.+.++++|+++|+++|++||.|.+|.+.+ ++++++|||+|.+.++|.+|++. ++..+ .|+.|+|.+
T Consensus 5 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~---------~g~~l~v~~ 74 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV---------GLSKCEIKV 74 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB---------TTBCCCEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE---------CCEEEEEEE
Confidence 35688999999999999999999998765 34578999999999999999985 88777 899999987
Q ss_pred e
Q 020065 78 S 78 (331)
Q Consensus 78 s 78 (331)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 5
No 335
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.38 E-value=6.1e-13 Score=112.85 Aligned_cols=72 Identities=18% Similarity=0.060 Sum_probs=64.6
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||.|.+|.+.. +.++++|||+|.+.++|.+|++.|||..| .|+.|+|.|+
T Consensus 94 ~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l---------~Gr~l~V~~a 164 (177)
T 2f3j_A 94 SNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL---------DGRPMDIQLV 164 (177)
T ss_dssp ECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC---------SSSBCEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE---------CCEEEEEEEe
Confidence 35688999999999999999999998876 34668999999999999999999999987 8999999999
Q ss_pred cccc
Q 020065 79 AHTD 82 (331)
Q Consensus 79 ~~~~ 82 (331)
....
T Consensus 165 ~~~~ 168 (177)
T 2f3j_A 165 ASQI 168 (177)
T ss_dssp SSGG
T ss_pred cCCC
Confidence 8653
No 336
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.7e-13 Score=102.75 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=58.1
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.+.++++|+++|+++|+.|+.|.-+.... +.+++||||+|.+.++|.+||+.|||..| .|+.|+|.+++.
T Consensus 21 ~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~l~V~~a~~ 91 (102)
T 2fc8_A 21 KGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI---------DGNKVTLDWAKP 91 (102)
T ss_dssp ECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE---------TTEECEEEECCC
T ss_pred eCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE---------CCeEEEEEEecC
Confidence 35688999999999999886544322111 33567999999999999999999999988 899999999986
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
+
T Consensus 92 ~ 92 (102)
T 2fc8_A 92 K 92 (102)
T ss_dssp C
T ss_pred C
Confidence 5
No 337
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=2.3e-13 Score=110.84 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=65.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
.++|| |.||++++|+++|+++|+.|| |++|+|..+ ++|+ |||+|++.++|.+|| .+|+..|.++ .|+|
T Consensus 46 ~~~lf--V~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGf-aFV~F~~~e~A~~Al-~~~g~~l~gR---~i~V 117 (139)
T 2hgn_A 46 GHCVH--MRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGE-ADVEFATHEEAVAAM-SKDRANMQHR---YIEL 117 (139)
T ss_dssp CCCEE--CCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCC-CEEECSHHHHHHHHT-TCCSCSSSSC---CCCC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceE-EEEEeCCHHHHHHHH-hhCCCEECCE---EEEE
Confidence 45677 999999999999999999999 779988753 3566 999999999999999 7899999998 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
..++..+
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 8876544
No 338
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.38 E-value=8.4e-13 Score=109.41 Aligned_cols=75 Identities=25% Similarity=0.446 Sum_probs=67.2
Q ss_pred EEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 128 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 128 ~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
+|+ |+||+.++|+++|+++|+.||.|.+|++.+++ +|+ |||+|.+.++|.+|++.|||..+.++ .|+|.+
T Consensus 2 ~l~--V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~ 75 (166)
T 3md3_A 2 VLY--VGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNY-AFVEYHQSHDANIALQTLNGKQIENN---IVKINW 75 (166)
T ss_dssp EEE--EEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEE-EEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred EEE--ECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCE-EEEEeCCHHHHHHHHHHcCCCccCCC---eeEEEE
Confidence 456 89999999999999999999999999997654 345 99999999999999999999999998 999999
Q ss_pred ecCCC
Q 020065 204 SRHTD 208 (331)
Q Consensus 204 ak~~~ 208 (331)
++...
T Consensus 76 ~~~~~ 80 (166)
T 3md3_A 76 AFQSQ 80 (166)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 86543
No 339
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.9e-12 Score=101.71 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=66.5
Q ss_pred CCcEEEEEeccCCCCCC----------HHHHHHHHccCCCeeEEEEEccC-CCeeEEEEcCCHHHHHHHHHHhcCCcccC
Q 020065 125 ESNVLLASIENMQYAVT----------LDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYD 193 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt----------~~~L~~~Fs~fG~V~~v~i~~~~-~g~~afV~f~~~~~A~~Ai~~lng~~i~~ 193 (331)
++++|. +.|+-..-. +++|++.|++||.|++|+|.+.. +|+ |||+|.+.++|.+|++.|||+.+.|
T Consensus 6 ps~vv~--L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~-~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQ--LSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGN-VYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEE--EESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCC-EEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEE--EECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEE-EEEEECCHHHHHHHHHHhCCCEECC
Confidence 477877 778743222 35789999999999999998764 676 9999999999999999999999999
Q ss_pred CCceEEEEEeecCCCcc
Q 020065 194 GGFCKLHISYSRHTDLS 210 (331)
Q Consensus 194 ~~~~~l~v~~ak~~~~~ 210 (331)
+ .|+|+|+......
T Consensus 83 R---~i~v~~~~~~~y~ 96 (114)
T 3s6e_A 83 K---MITAAYVPLPTYH 96 (114)
T ss_dssp E---ECEEEEECHHHHH
T ss_pred E---EEEEEEEcHHHHH
Confidence 8 9999999755433
No 340
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=3e-13 Score=103.87 Aligned_cols=75 Identities=11% Similarity=0.243 Sum_probs=66.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
+++|| |+||+.++++++|+++|+.||.|.+|++..+. +|+ |||+|.+.++|.+|++ ||..|.|+ .|+|
T Consensus 9 ~~~l~--V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~-afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v 80 (102)
T 2xs2_A 9 PNTVF--VGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGY-GFVSFYNDVDVQKIVE--SQINFHGK---KLKL 80 (102)
T ss_dssp EEEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEE-EEEEESSCCCHHHHTT--CCCEETTE---ECEE
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccce-EEEEECCHHHHHHHHh--CCCeECCE---EEEE
Confidence 56677 89999999999999999999999999988753 355 9999999999999999 99999988 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
.++....
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9986543
No 341
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.37 E-value=2.2e-13 Score=110.87 Aligned_cols=72 Identities=17% Similarity=0.047 Sum_probs=62.3
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEe
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITY 77 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~ 77 (331)
+.+.+|++||++|+++|++|| |++|.+++ ++++++|||+|.+.++|++|| .+|+..| .|+.|+|..
T Consensus 51 V~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l---------~gR~i~V~~ 119 (139)
T 2hgn_A 51 MRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM---------QHRYIELFL 119 (139)
T ss_dssp CCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS---------SSCCCCCEE
T ss_pred EeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE---------CCEEEEEEE
Confidence 357899999999999999999 67888775 346789999999999999999 7899887 899999998
Q ss_pred eccccc
Q 020065 78 SAHTDL 83 (331)
Q Consensus 78 s~~~~l 83 (331)
++..+.
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 342
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.37 E-value=9.8e-13 Score=104.01 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=65.5
Q ss_pred CCcEEEEEeccCCCC--C---CHHHHHHHHccCCCeeEEEEEccC---------CCeeEEEEcCCHHHHHHHHHHhcCCc
Q 020065 125 ESNVLLASIENMQYA--V---TLDVLHMVFSAFGPVQKIAMFDKN---------GGLQALIQYPDVQTAVVAKEALEGHC 190 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~--v---t~~~L~~~Fs~fG~V~~v~i~~~~---------~g~~afV~f~~~~~A~~Ai~~lng~~ 190 (331)
++++|+ +.|+-.. + -+++|++.|++||.|++|+|.+.+ +|+ +||+|.+.++|.+|++.|||+.
T Consensus 19 ps~vl~--L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~-~FV~F~~~e~A~~Ai~~LnGr~ 95 (118)
T 3ue2_A 19 ESTVMV--LRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRW 95 (118)
T ss_dssp SCCEEE--EESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEE-EEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCEEE--EECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEE-EEEEECCHHHHHHHHHHHCCCE
Confidence 588888 7787432 2 368999999999999999987643 255 9999999999999999999999
Q ss_pred ccCCCceEEEEEeecCCC
Q 020065 191 IYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 191 i~~~~~~~l~v~~ak~~~ 208 (331)
+.|+ .|+|+|+....
T Consensus 96 f~GR---~i~v~~~~~~~ 110 (118)
T 3ue2_A 96 FAGR---KVVAEVYDQER 110 (118)
T ss_dssp ETTE---ECEEEEECHHH
T ss_pred ECCc---EEEEEEcChHh
Confidence 9998 99999986543
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=109.12 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=61.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeE--------EEEee-cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceE
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHK--------ITTFE-KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTL 73 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~--------i~~~~-~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i 73 (331)
+.++++|+++|+++|+.||.|.+ |.+.+ +.+++||||+|.+.++|.+|++.|||..| .|+.|
T Consensus 52 nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---------~g~~l 122 (143)
T 3egn_A 52 NLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---------FGKPM 122 (143)
T ss_dssp EECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE---------TTEEC
T ss_pred CCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe---------CCcEE
Confidence 45789999999999999999875 44433 55778999999999999999999999988 89999
Q ss_pred EEEeeccc
Q 020065 74 RITYSAHT 81 (331)
Q Consensus 74 ~v~~s~~~ 81 (331)
+|.|++..
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999754
No 344
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=99.99 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 138 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 138 ~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
..+++++|+++|++||.|++|+|.++++|+ |||+|.+.++|.+|++.+++ +.++ .|+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGf-aFVeF~~~~~A~~Ai~~~~~--~~g~---~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGT-AVVEFATVKAAELAVQNEVG--LVDN---PLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSE-EEEEESCHHHHHHHHHTCCB--CSSS---BCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCE-EEEEECCHHHHHHHHHhcCC--CCCC---eEEEEEccCCC
Confidence 468999999999999999999999888887 99999999999999998655 5677 99999987554
No 345
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=2.6e-12 Score=100.88 Aligned_cols=72 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEc--------cCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCc
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 196 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~--------~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~ 196 (331)
.+++|| |+||+.++|+++|+++|++||.|. +++.. +++|+ |||+|.+.++|.+|++.|++ +.|+
T Consensus 7 ~~~~lf--VgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~-aFV~f~~~~~a~~Ai~~~~~--~~G~-- 78 (114)
T 2dnl_A 7 GSRKVF--VGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGY-AFLLFQEESSVQALIDACLE--EDGK-- 78 (114)
T ss_dssp CCCCEE--EECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSE-EEECCSSHHHHHHHHHHSEE--ETTE--
T ss_pred CCCEEE--EcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccE-EEEEECCHHHHHHHHHhhhh--cCCc--
Confidence 366788 899999999999999999999999 66653 33566 99999999999999999943 5565
Q ss_pred eEEEEEeec
Q 020065 197 CKLHISYSR 205 (331)
Q Consensus 197 ~~l~v~~ak 205 (331)
.|.+..+.
T Consensus 79 -~~~~~~~~ 86 (114)
T 2dnl_A 79 -LYLCVSSP 86 (114)
T ss_dssp -EEEEECCS
T ss_pred -EEEeccCC
Confidence 66666553
No 346
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=7.1e-14 Score=110.12 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=63.0
Q ss_pred CCCCCCCcHHHHHHhhcccCceeE--------EEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCC
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHK--------ITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMG 69 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~--------i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~ 69 (331)
.+.++++|+++|+++|++||.|.+ |.+.. +.+++||||+|.+.++|.+|++.|||..| .
T Consensus 13 ~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~---------~ 83 (116)
T 2lcw_A 13 QGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF---------S 83 (116)
Confidence 356789999999999999999988 76654 34567999999999999999999999988 8
Q ss_pred CceEEEEeecccc
Q 020065 70 PCTLRITYSAHTD 82 (331)
Q Consensus 70 g~~i~v~~s~~~~ 82 (331)
|+.|+|.+++.+.
T Consensus 84 g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 84 GNPIKVSFATRRA 96 (116)
Confidence 9999999998653
No 347
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.9e-13 Score=106.58 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=66.3
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCe----eEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V----~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
..+|+ |.||++++|+++|+++|+.||.| .+|+|..+. +|+ |||+|.+.++|.+|++. |++.|.++
T Consensus 23 ~~~v~--V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~-aFV~F~~~~~A~~Al~~-~~~~l~gR--- 95 (123)
T 2dha_A 23 QVIVR--MRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGD-AFVLFACEEYAQNALRK-HKDLLGKR--- 95 (123)
T ss_dssp CCEEE--ECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEE-EEECCSSHHHHHHHHTT-TTEESSSC---
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeE-EEEEECCHHHHHHHHHh-CCCeeCCe---
Confidence 56777 99999999999999999999975 678876532 456 99999999999999996 99999988
Q ss_pred EEEEEeecCCCcc
Q 020065 198 KLHISYSRHTDLS 210 (331)
Q Consensus 198 ~l~v~~ak~~~~~ 210 (331)
.|+|..+...+..
T Consensus 96 ~i~V~~a~~~e~~ 108 (123)
T 2dha_A 96 YIELFRSTAAEVQ 108 (123)
T ss_dssp EECCEEECHHHHH
T ss_pred EEEEEECCHHHHH
Confidence 9999988665543
No 348
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.34 E-value=2.4e-12 Score=111.62 Aligned_cols=77 Identities=18% Similarity=0.374 Sum_probs=67.9
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEcc-----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~-----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
+++|| |.||+.++|+++|+++|+.||.|.+|++.++ ++|+ |||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 28 ~~~l~--V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~l~~~~~~g~---~l~ 101 (216)
T 2qfj_A 28 MSRVY--VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF-AFVEYEVPEAAQLALEQMNSVMLGGR---NIK 101 (216)
T ss_dssp HTEEE--EECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSE-EEEEESSHHHHHHHHHHHSSCCCC-C---CCE
T ss_pred CCEEE--EECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCce-EEEEeCCHHHHHHHHHHccCCeeCCe---eEE
Confidence 56788 8899999999999999999999999999754 3566 99999999999999999999999998 999
Q ss_pred EEeecCCC
Q 020065 201 ISYSRHTD 208 (331)
Q Consensus 201 v~~ak~~~ 208 (331)
|.++....
T Consensus 102 v~~~~~~~ 109 (216)
T 2qfj_A 102 VGRPSNIG 109 (216)
T ss_dssp EECCSCCG
T ss_pred EecCCCcc
Confidence 99876543
No 349
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.2e-13 Score=108.59 Aligned_cols=73 Identities=14% Similarity=0.039 Sum_probs=61.8
Q ss_pred CCCCCCCcHHHHHHhhcccCce----eEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFV----HKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V----~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~ 74 (331)
.+.+|++|+++|+++|+.||.| .+|.+.+ ++++++|||+|.+.++|.+||+. |+..| .+|.|+
T Consensus 29 ~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l---------~gR~i~ 98 (123)
T 2dha_A 29 RGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL---------GKRYIE 98 (123)
T ss_dssp CSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES---------SSCEEC
T ss_pred eCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee---------CCeEEE
Confidence 4679999999999999999986 5777765 34568999999999999999986 88776 899999
Q ss_pred EEeecccccc
Q 020065 75 ITYSAHTDLS 84 (331)
Q Consensus 75 v~~s~~~~l~ 84 (331)
|..++.+++.
T Consensus 99 V~~a~~~e~~ 108 (123)
T 2dha_A 99 LFRSTAAEVQ 108 (123)
T ss_dssp CEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9998866543
No 350
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.34 E-value=2.3e-12 Score=107.80 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=67.6
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 198 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~ 198 (331)
+++|| |+||+.++|+++|+++|+.||.|.+|++.++. +|+ |||+|.+.++|.+|++.|||..+.++....
T Consensus 3 ~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~-afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 3 AIKMF--VGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGC-CFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CEEEE--EESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEE-EEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred ceEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceE-EEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 56777 89999999999999999999999999987642 345 999999999999999999999887443448
Q ss_pred EEEEeecCCC
Q 020065 199 LHISYSRHTD 208 (331)
Q Consensus 199 l~v~~ak~~~ 208 (331)
|++.+++...
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 8888876543
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=5.4e-13 Score=106.69 Aligned_cols=71 Identities=23% Similarity=0.108 Sum_probs=60.4
Q ss_pred CCCCCCCcHHHHHHhhcccCcee--EEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVH--KITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~--~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
.+.+|++|+++|+++|+.| .|. +|.+.+ +++++||||+|.+.++|.+||+. ++..| .||.|+|.
T Consensus 48 gnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l---------~gR~I~V~ 116 (126)
T 2hgm_A 48 RGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI---------GHRYIEVF 116 (126)
T ss_dssp ECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB---------TTBCCCCE
T ss_pred eCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE---------CCEEEEEE
Confidence 4689999999999999999 566 787765 44678999999999999999984 77776 89999999
Q ss_pred eeccccc
Q 020065 77 YSAHTDL 83 (331)
Q Consensus 77 ~s~~~~l 83 (331)
.++.+++
T Consensus 117 ~a~~~e~ 123 (126)
T 2hgm_A 117 KSSQEEV 123 (126)
T ss_dssp EECHHHH
T ss_pred ECCHHHh
Confidence 9876654
No 352
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.3e-12 Score=119.89 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCcEEEEEecc--CCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC--CceEE
Q 020065 124 PESNVLLASIEN--MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG--GFCKL 199 (331)
Q Consensus 124 ~~~~~l~v~v~n--l~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~--~~~~l 199 (331)
.++++|| |+| |...+|+++|+++|++||+|.+|++.+ ++|| |||+|.+.++|.+|++.|||..+.+. ....|
T Consensus 16 ~ps~~l~--VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgf-aFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLV--VANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPY-SFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEE--EETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSE-EEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEE--EEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCE-EEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 4688899 656 678999999999999999999998876 4577 99999999999999999999998422 12368
Q ss_pred EEEeecC
Q 020065 200 HISYSRH 206 (331)
Q Consensus 200 ~v~~ak~ 206 (331)
.|+|++.
T Consensus 92 y~~~~~~ 98 (345)
T 3tht_A 92 YLNFVEK 98 (345)
T ss_dssp EEEECSS
T ss_pred EEEEeec
Confidence 8999853
No 353
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=2.4e-12 Score=101.80 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=56.9
Q ss_pred cHHHHHHhhcccCceeEEEEeecC--------CCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecc
Q 020065 9 KVIFILQVFSAFGFVHKITTFEKT--------AGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAH 80 (331)
Q Consensus 9 tee~L~~lF~~fG~V~~i~~~~~~--------~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~ 80 (331)
.++||++.|++||+|.+|++.+.+ ++++|||+|.+.++|.+|++.|||+.| .||.|+|.|+..
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f---------~GR~i~v~~~~~ 108 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE---------TTEECEEEEECH
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE---------CCcEEEEEEcCh
Confidence 578999999999999999888732 247899999999999999999999988 899999999874
Q ss_pred c
Q 020065 81 T 81 (331)
Q Consensus 81 ~ 81 (331)
.
T Consensus 109 ~ 109 (118)
T 3ue2_A 109 E 109 (118)
T ss_dssp H
T ss_pred H
Confidence 3
No 354
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.32 E-value=1e-12 Score=105.09 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=64.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCee--EEEEEcc----CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~--~v~i~~~----~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.++|| |+||++++|+++|+++|+.| .|+ +|+|..+ ++|+ |||+|.+.++|.+|++. ++..|.++ .|
T Consensus 42 ~~~lf--VgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGf-aFV~F~~~e~A~~Al~~-~~~~l~gR---~I 113 (126)
T 2hgm_A 42 DGFVR--LRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGE-AFVQFASQELAEKALGK-HKERIGHR---YI 113 (126)
T ss_dssp CCEEE--EECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSE-EEEEESSTTHHHHHHTT-TTCCBTTB---CC
T ss_pred CCEEE--EeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceE-EEEEECCHHHHHHHHHH-CCCEECCE---EE
Confidence 55666 89999999999999999999 677 8887653 3577 99999999999999985 77889988 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|..+..++
T Consensus 114 ~V~~a~~~e 122 (126)
T 2hgm_A 114 EVFKSSQEE 122 (126)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 999886544
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=1.6e-12 Score=96.65 Aligned_cols=64 Identities=19% Similarity=0.167 Sum_probs=57.8
Q ss_pred CCCCCCCcHHHHHHhhccc----C-------ceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCC
Q 020065 2 CLTLSLLKVIFILQVFSAF----G-------FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 70 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~f----G-------~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g 70 (331)
.+.++++|+++|+++|++| | .|.++.+.+ +++||||+|.+.++|.+|+ .|||..| .|
T Consensus 12 ~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~--~kg~afV~f~~~~~a~~A~-~l~g~~~---------~g 79 (87)
T 2hzc_A 12 GNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIF---------QG 79 (87)
T ss_dssp ESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS--SSSEEEEEESSHHHHHHHG-GGTTCEE---------TT
T ss_pred eCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC--CCcEEEEEcCCHHHHHHHH-hcCCCEE---------CC
Confidence 3568899999999999999 8 899998876 4679999999999999999 9999988 89
Q ss_pred ceEEEEe
Q 020065 71 CTLRITY 77 (331)
Q Consensus 71 ~~i~v~~ 77 (331)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 356
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.31 E-value=1.1e-12 Score=100.61 Aligned_cols=69 Identities=10% Similarity=0.059 Sum_probs=60.7
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|+.||.|.+|.+.+ +.+++||||+|.+.++|.+|++ +|..+ .|+.|+|.++
T Consensus 15 ~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~---------~g~~l~v~~a 83 (102)
T 2xs2_A 15 GGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINF---------HGKKLKLGPA 83 (102)
T ss_dssp ECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEE---------TTEECEEEEE
T ss_pred eCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeE---------CCEEEEEEEC
Confidence 35678999999999999999999998877 2345799999999999999998 88877 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
..+
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 754
No 357
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.30 E-value=8.1e-12 Score=112.24 Aligned_cols=76 Identities=20% Similarity=0.382 Sum_probs=69.1
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEee
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 204 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~a 204 (331)
.+++|| |+||+.++|+++|+++|+.||.|.+|++.+.+ |+ |||+|.+.++|.+|++.|||..|.++ .|+|.|+
T Consensus 21 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k-g~-afV~f~~~~~A~~A~~~l~g~~i~g~---~l~v~~a 93 (261)
T 3sde_A 21 QRCRLF--VGNLPTDITEEDFKRLFERYGEPSEVFINRDR-GF-GFIRLESRTLAEIAKAELDGTILKSR---PLRIRFA 93 (261)
T ss_dssp GGGEEE--EESCCTTCCHHHHHHHTGGGCCCSEEEEETTT-TE-EEEECSSHHHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred CCCEEE--EECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC-cE-EEEEECCHHHHHHHHHHcCCcEECCc---eeEeeec
Confidence 356788 89999999999999999999999999997754 55 99999999999999999999999988 9999998
Q ss_pred cCC
Q 020065 205 RHT 207 (331)
Q Consensus 205 k~~ 207 (331)
+..
T Consensus 94 ~~~ 96 (261)
T 3sde_A 94 THG 96 (261)
T ss_dssp CCS
T ss_pred ccC
Confidence 754
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.28 E-value=2.3e-12 Score=101.99 Aligned_cols=69 Identities=19% Similarity=0.248 Sum_probs=58.7
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCC----HHH----HHHHHH--HhCCCCcCcccCCCCCC
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSD----TET----ASSAKN--ALDGRSIPRYLLPENMG 69 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~----~e~----A~~Av~--~lng~~~~~~~~~~~~~ 69 (331)
+++++||++|+++|+.||+|.++.++. +.++|+|||+|.| .++ |.+|++ .|||..| .
T Consensus 14 ~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I---------~ 84 (136)
T 2j8a_A 14 TTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI---------M 84 (136)
T ss_dssp CCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE---------T
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee---------c
Confidence 589999999999999999999998776 4568899999996 434 889998 7899988 8
Q ss_pred CceEEEEeeccc
Q 020065 70 PCTLRITYSAHT 81 (331)
Q Consensus 70 g~~i~v~~s~~~ 81 (331)
|++|+|.+-...
T Consensus 85 Gr~irV~ln~~g 96 (136)
T 2j8a_A 85 GFKFEVILNKHS 96 (136)
T ss_dssp TEEEEEEECCTT
T ss_pred CcEEEEEECccc
Confidence 999999987654
No 359
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=3.2e-12 Score=106.26 Aligned_cols=69 Identities=7% Similarity=-0.011 Sum_probs=61.5
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+.++++|+++|+++|++||.|.++.+.+ +.++++|||+|.+.++|.+|++ +||..| .|+.|+|.|+
T Consensus 94 nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~---------~g~~i~V~~a 163 (167)
T 2cjk_A 94 GIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF---------KDRKIEIKRA 163 (167)
T ss_dssp EECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS---------SSSCEEEEEC
T ss_pred CCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe---------CCeEEEEeec
Confidence 3578999999999999999999998875 3466899999999999999998 899887 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
..+
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 765
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.6e-12 Score=100.90 Aligned_cols=74 Identities=16% Similarity=0.282 Sum_probs=62.0
Q ss_pred EEEEEeccC----CCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCC----HHH----HHHHHH--HhcC
Q 020065 128 VLLASIENM----QYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPD----VQT----AVVAKE--ALEG 188 (331)
Q Consensus 128 ~l~v~v~nl----~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~----~~~----A~~Ai~--~lng 188 (331)
.|+ |+|| ++.+++++|+++|+.||+|.+++++.+. +|| |||+|.| .++ |.+|+. .|||
T Consensus 4 kI~--VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGf-gfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 4 EIV--VYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHV-YLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp EEE--EEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEE-EEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred EEE--EeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeE-EEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 455 8899 9999999999999999999999987643 567 9999996 333 888988 7899
Q ss_pred CcccCCCceEEEEEeecCC
Q 020065 189 HCIYDGGFCKLHISYSRHT 207 (331)
Q Consensus 189 ~~i~~~~~~~l~v~~ak~~ 207 (331)
..|.|+ +|+|.+-+..
T Consensus 81 ~~I~Gr---~irV~ln~~g 96 (136)
T 2j8a_A 81 CFIMGF---KFEVILNKHS 96 (136)
T ss_dssp EEETTE---EEEEEECCTT
T ss_pred CeecCc---EEEEEECccc
Confidence 999998 9999986543
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=9.3e-13 Score=101.86 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=56.2
Q ss_pred ccCCCCCCHHHHHHHH------------ccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCce
Q 020065 134 ENMQYAVTLDVLHMVF------------SAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 197 (331)
Q Consensus 134 ~nl~~~vt~~~L~~~F------------s~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~ 197 (331)
.+|+..+++++|+++| ++||.|++|+|.++. +|+ |||+|.+.++|.+|++.|||+.+.|+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~-~fV~f~~~~~A~~A~~~lng~~~~Gr--- 96 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGN-VYVKFRREEDAEKAVIDLNNRWFNGQ--- 96 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEE-EEEEESCHHHHHHHHHHHTTCEETTE---
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEE-EEEEECCHHHHHHHHHHHCCCEECCE---
Confidence 3444456666666555 999999999998753 566 99999999999999999999999998
Q ss_pred EEEEEee
Q 020065 198 KLHISYS 204 (331)
Q Consensus 198 ~l~v~~a 204 (331)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 362
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.28 E-value=5.1e-12 Score=107.87 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=66.7
Q ss_pred CCcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC-----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEE
Q 020065 125 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 199 (331)
Q Consensus 125 ~~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~-----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l 199 (331)
.+++|| |+||+.++|+++|+++|+.||.|.+|++.++. +|+ |||+|.+.++|.+|++. ++..|.++ .|
T Consensus 12 ~~~~l~--V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~-afV~f~~~~~A~~A~~~-~~~~~~g~---~l 84 (196)
T 1l3k_A 12 QLRKLF--IGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGF-GFVTYATVEEVDAAMNA-RPHKVDGR---VV 84 (196)
T ss_dssp GGGEEE--EESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEE-EEEEESSHHHHHHHHHT-CSCEETTE---EC
T ss_pred CCCEEE--EeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccce-EEEEeCCHHHHHHHHhc-CCCEECCE---Ee
Confidence 367888 88999999999999999999999999987643 455 99999999999999986 89999988 99
Q ss_pred EEEeecCCC
Q 020065 200 HISYSRHTD 208 (331)
Q Consensus 200 ~v~~ak~~~ 208 (331)
+|.++....
T Consensus 85 ~v~~~~~~~ 93 (196)
T 1l3k_A 85 EPKRAVSRE 93 (196)
T ss_dssp EEEECCC--
T ss_pred eeecccCcc
Confidence 999986543
No 363
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.27 E-value=5.7e-12 Score=121.45 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=65.4
Q ss_pred CCCCCCCCcHHHHHHhhcccCceeEEEEee----cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 1 MCLTLSLLKVIFILQVFSAFGFVHKITTFE----KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 1 ~~~~~~~vtee~L~~lF~~fG~V~~i~~~~----~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+++.+++||+++|+++|+.||.|.+|.|+. +.+++||||+|.+.++|.+||+.|||..| .|+.|+|.
T Consensus 107 V~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i---------~gr~i~V~ 177 (437)
T 3pgw_S 107 VARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI---------DGRRVLVD 177 (437)
T ss_pred EeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE---------CCEEEEEE
Confidence 357889999999999999999999998875 34578999999999999999999999988 89999999
Q ss_pred eecccc
Q 020065 77 YSAHTD 82 (331)
Q Consensus 77 ~s~~~~ 82 (331)
|++.+.
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998553
No 364
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.27 E-value=5.8e-12 Score=105.68 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
+.++++|+++|+++|++||.|..+ ...+.++++|||+|.+.++|.+|++.|||..| .|+.|+|+|++.+
T Consensus 106 nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~---------~g~~i~v~~a~~k 174 (175)
T 1fje_B 106 NLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI---------DGRSVSLYYTGEK 174 (175)
T ss_dssp SCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE---------TTEEEEEEECSSC
T ss_pred CCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE---------CCeEEEEEecCCC
Confidence 457899999999999999999877 22356778999999999999999999999988 8999999999754
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.25 E-value=8.1e-12 Score=110.45 Aligned_cols=68 Identities=24% Similarity=0.292 Sum_probs=56.7
Q ss_pred cHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCC------CCCceEEEEeeccc
Q 020065 9 KVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPEN------MGPCTLRITYSAHT 81 (331)
Q Consensus 9 tee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~------~~g~~i~v~~s~~~ 81 (331)
||++|+++|++||+|.+|.+++ ++++|||+|.+.++|+.|++.|||+.|. ++.. ..|+.|+|.|++.+
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~---~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLL---LPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCC---CTTSTTGGGGGGSCCCEEEECC--
T ss_pred cHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEe---ccccccccccCCCCEEEEEEccCC
Confidence 8999999999999999999987 4579999999999999999999999871 0000 05899999999854
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=4.2e-12 Score=118.05 Aligned_cols=68 Identities=16% Similarity=0.151 Sum_probs=58.4
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCc--eEEEEeec
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPC--TLRITYSA 79 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~--~i~v~~s~ 79 (331)
.+|++|||+|+++|++||+|.+|++.+ +|+||||+|.+.|+|++|++.|||+++. . ..|+ .|+|+|..
T Consensus 28 l~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~----~--~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 28 LGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV----D--DLGQKITLYLNFVE 97 (345)
T ss_dssp GGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE----C--TTSCEEECEEEECS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc----c--ccCCceEEEEEEee
Confidence 478999999999999999999988765 5679999999999999999999999872 0 1244 78999875
No 367
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.4e-12 Score=95.24 Aligned_cols=68 Identities=18% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.++++|+++|+++|++||.|.+|.+.++ +++||||+|.+.++|++| ++..+. +.|+.|+|.+++.+.
T Consensus 12 nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~-------~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 12 RCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLI-------IKGISVHISNAEPKH 79 (88)
T ss_dssp SCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEE-------ETTEEEEEECCCCCC
T ss_pred CCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCce-------eCCEEEEEEecCCCC
Confidence 56889999999999999999999988765 567999999999999754 554442 379999999987653
No 368
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.22 E-value=1.5e-11 Score=105.66 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=63.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC----CCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~----~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
+++|| |+||+.++|+++|+++|+.||.|.+|+|.+.. +|+ |||+|.+.++|.+|++.++ ..|.|+ .|+|
T Consensus 109 ~~~l~--V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~-aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V 181 (193)
T 2voo_A 109 NRSVY--IKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGS-IFVVFDSIESAKKFVETPG-QKYKET---DLLI 181 (193)
T ss_dssp HTEEE--EECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEE-EEEEESSHHHHHHHHHCTT-CEETTE---ECEE
T ss_pred cCEEE--ecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccE-EEEEECCHHHHHHHHHhCC-CeECCE---EEEE
Confidence 46777 89999999999999999999999999987532 455 9999999999999998765 578888 9999
Q ss_pred Eeec
Q 020065 202 SYSR 205 (331)
Q Consensus 202 ~~ak 205 (331)
.+++
T Consensus 182 ~~~~ 185 (193)
T 2voo_A 182 LFKD 185 (193)
T ss_dssp EETT
T ss_pred EEhH
Confidence 9865
No 369
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.21 E-value=2.3e-11 Score=101.52 Aligned_cols=74 Identities=20% Similarity=0.383 Sum_probs=65.6
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccC----C-------CeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~f----G-------~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+++|+ |+||+.++|+++|+++|+.| | .|.++++.+.+ |+ |||+|.+.++|.+|+ .|||..|.++
T Consensus 4 ~~~l~--V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-g~-afV~f~~~~~A~~A~-~~~~~~~~g~ 78 (172)
T 2g4b_A 4 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-NF-AFLEFRSVDETTQAM-AFDGIIFQGQ 78 (172)
T ss_dssp GGEEE--EESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-TE-EEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred ccEEE--EcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-CE-EEEEeCCHHHHHHHH-HhCCcEecCc
Confidence 57788 88999999999999999999 7 78888877664 55 999999999999999 8999999998
Q ss_pred CceEEEEEeecCC
Q 020065 195 GFCKLHISYSRHT 207 (331)
Q Consensus 195 ~~~~l~v~~ak~~ 207 (331)
.|+|.+++..
T Consensus 79 ---~i~v~~~~~~ 88 (172)
T 2g4b_A 79 ---SLKIRRPHDY 88 (172)
T ss_dssp ---ECEEECCSSC
T ss_pred ---eeeecCCccc
Confidence 9999987643
No 370
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=2.2e-11 Score=95.54 Aligned_cols=66 Identities=12% Similarity=-0.077 Sum_probs=53.4
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee-------cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEE
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE-------KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLR 74 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~-------~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~ 74 (331)
.+.++++|+++|+++|++||+|. +.++. +++++||||+|.+.++|.+|++.|++ + .|+.|.
T Consensus 14 gnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~---------~G~~~~ 81 (114)
T 2dnl_A 14 GGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E---------DGKLYL 81 (114)
T ss_dssp ECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E---------TTEEEE
T ss_pred cCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c---------CCcEEE
Confidence 35689999999999999999999 65554 24578999999999999999999953 3 566666
Q ss_pred EEeec
Q 020065 75 ITYSA 79 (331)
Q Consensus 75 v~~s~ 79 (331)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 66544
No 371
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.18 E-value=3.4e-11 Score=102.82 Aligned_cols=74 Identities=20% Similarity=0.374 Sum_probs=65.0
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccC----C-------CeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~f----G-------~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
+++|| |+||+.++|+++|+++|+.| | .|.++++.+. +|+ |||+|.+.++|.+|+ .|||..|.++
T Consensus 4 ~~~l~--V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~-~g~-afV~F~~~~~A~~Al-~l~g~~~~g~ 78 (198)
T 2yh0_A 4 ARRLY--VGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNF-AFLEFRSVDETTQAM-AFDGIIFQGQ 78 (198)
T ss_dssp CCEEE--EESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT-TTE-EEEEESCSHHHHHHG-GGTTEEETTE
T ss_pred eeEEE--EcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC-CCE-EEEEeCCHHHHHHHH-HhcCCEEcCc
Confidence 67788 88999999999999999999 5 6777777655 455 999999999999999 8999999998
Q ss_pred CceEEEEEeecCC
Q 020065 195 GFCKLHISYSRHT 207 (331)
Q Consensus 195 ~~~~l~v~~ak~~ 207 (331)
.|+|.+++..
T Consensus 79 ---~i~v~~~~~~ 88 (198)
T 2yh0_A 79 ---SLKIRRPHDY 88 (198)
T ss_dssp ---EEEEECCCCC
T ss_pred ---eEEEeCCCCC
Confidence 9999998654
No 372
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.18 E-value=2.4e-11 Score=104.43 Aligned_cols=68 Identities=16% Similarity=0.011 Sum_probs=59.2
Q ss_pred CCCCCCCcHHHHHHhhcccCceeEEEEee---cCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 2 CLTLSLLKVIFILQVFSAFGFVHKITTFE---KTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~fG~V~~i~~~~---~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
.+.++++|+++|+++|++||.|.+|.+.+ +..+|+|||+|.+.++|.+|++.++ ..| .|+.|+|.++
T Consensus 115 ~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~---------~Gr~l~V~~~ 184 (193)
T 2voo_A 115 KGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKY---------KETDLLILFK 184 (193)
T ss_dssp ECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEE---------TTEECEEEET
T ss_pred cCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeE---------CCEEEEEEEh
Confidence 45688999999999999999999998876 4456899999999999999998665 466 8999999976
Q ss_pred c
Q 020065 79 A 79 (331)
Q Consensus 79 ~ 79 (331)
+
T Consensus 185 ~ 185 (193)
T 2voo_A 185 D 185 (193)
T ss_dssp T
T ss_pred H
Confidence 5
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-10 Score=85.88 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=62.5
Q ss_pred CCCCcEEEEEeccC-C-CCCCH----HHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCc
Q 020065 123 EPESNVLLASIENM-Q-YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 196 (331)
Q Consensus 123 ~~~~~~l~v~v~nl-~-~~vt~----~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~ 196 (331)
.++..+++|++.+- + .++-+ .+|.+.|+.||+|..+++...+ +||+|.+.++|.+|++ |||..+.++
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr-- 76 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR-- 76 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE--
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe--
Confidence 35677888777552 1 23333 6799999999999999998863 9999999999999999 999999999
Q ss_pred eEEEEEeecC
Q 020065 197 CKLHISYSRH 206 (331)
Q Consensus 197 ~~l~v~~ak~ 206 (331)
.|+|+++++
T Consensus 77 -~LkV~lkt~ 85 (91)
T 2dnr_A 77 -TITIALKSP 85 (91)
T ss_dssp -EEEEEECCC
T ss_pred -EEEEEeCCC
Confidence 999998754
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=84.23 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=51.4
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
.+|.+.|++||+|..+++... .+||+|.+.++|.+|++ |||..+ .||.|+|++++..
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v---------~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKEL---------LNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEE---------TTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEe---------CCeEEEEEeCCCC
Confidence 679999999999999998873 39999999999999998 999998 8999999987743
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2.3e-09 Score=84.40 Aligned_cols=74 Identities=12% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCCcEEEEEeccCCCC-CCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCC-HHHHHHHHHHhc--CCcccCCCceEE
Q 020065 124 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD-VQTAVVAKEALE--GHCIYDGGFCKL 199 (331)
Q Consensus 124 ~~~~~l~v~v~nl~~~-vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~-~~~A~~Ai~~ln--g~~i~~~~~~~l 199 (331)
+.+.+|+ |.|+++. ++.++|+++|+.||.|..|.+.+... .|||+|.+ .++|..|+..|| |..|.+. .+
T Consensus 16 ~~G~il~--v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~---~~ 88 (121)
T 1owx_A 16 KIGCLLK--FSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK---EV 88 (121)
T ss_dssp CCCCEEE--EEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS---SE
T ss_pred cCCeEEE--EecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc---EE
Confidence 3477777 8899999 99999999999999999999988776 69999999 899999999995 6667776 66
Q ss_pred EEEee
Q 020065 200 HISYS 204 (331)
Q Consensus 200 ~v~~a 204 (331)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 66544
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.1e-09 Score=81.71 Aligned_cols=74 Identities=12% Similarity=0.244 Sum_probs=60.4
Q ss_pred CCCCcEEEEEeccCC---CCCCH----HHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCC
Q 020065 123 EPESNVLLASIENMQ---YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 195 (331)
Q Consensus 123 ~~~~~~l~v~v~nl~---~~vt~----~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~ 195 (331)
.++..+++|.+.+.. .++-+ .+|.+.|+.||+|..+++..++ +||+|.+.++|.+||+ |||..|.++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr- 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGR- 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTE-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCe-
Confidence 456778887775421 12222 5689999999999999999873 9999999999999998 999999999
Q ss_pred ceEEEEEee
Q 020065 196 FCKLHISYS 204 (331)
Q Consensus 196 ~~~l~v~~a 204 (331)
.|+|++.
T Consensus 86 --~L~V~~k 92 (95)
T 1ufw_A 86 --AVKISGP 92 (95)
T ss_dssp --EEEEECC
T ss_pred --EEEEecc
Confidence 9999873
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=2.3e-09 Score=93.79 Aligned_cols=66 Identities=17% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCcHHHHHHhhcccCceeEEEEeec--------CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEee
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEK--------TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~--------~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+-.+++|++.|++||+|.++.+.+. .++|++||+|.+.++|.+|++.|||+.+ .||.|++.|+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~---------~gr~i~~~~~ 210 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF---------AGRKVVAEVY 210 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS---------SSSBCEEEEC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE---------CCeEEEEEEc
Confidence 4567899999999999999988751 3457899999999999999999999988 8999999998
Q ss_pred ccc
Q 020065 79 AHT 81 (331)
Q Consensus 79 ~~~ 81 (331)
...
T Consensus 211 ~~~ 213 (222)
T 3dxb_A 211 DQE 213 (222)
T ss_dssp CHH
T ss_pred CHH
Confidence 744
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2e-09 Score=80.22 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=49.4
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
.+|.+.|+.||+|..+++... .+||+|.+.++|.+||+ |||..+ .||.|+|++..
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v---------~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKV---------KGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEE---------TTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeee---------CCeEEEEeccC
Confidence 569999999999999988873 39999999999999998 999998 89999998643
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.78 E-value=2e-08 Score=76.28 Aligned_cols=71 Identities=13% Similarity=0.141 Sum_probs=64.4
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccC-----CCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~f-----G~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.+++- +.|++++|+++.++.+.+.+ |.|++|.+..+-+ -|+|+|.|...|.+|..+|||..|.++ +|+
T Consensus 21 ~rtia--L~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr---~Lr 93 (117)
T 2l9w_A 21 ETLIC--LFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGK---VIR 93 (117)
T ss_dssp TSCEE--EECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTE---EEE
T ss_pred CcEEE--EecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCe---EEE
Confidence 34555 78999999999999999999 9999999998876 399999999999999999999999988 999
Q ss_pred EEe
Q 020065 201 ISY 203 (331)
Q Consensus 201 v~~ 203 (331)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 874
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.70 E-value=1.9e-08 Score=87.77 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=56.0
Q ss_pred CHHHHHHHHccCCCeeEEEEEcc---------CCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEeecCCC
Q 020065 141 TLDVLHMVFSAFGPVQKIAMFDK---------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 208 (331)
Q Consensus 141 t~~~L~~~Fs~fG~V~~v~i~~~---------~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ak~~~ 208 (331)
.+++|++.|++||.|.+++|.+. .+|+ +||+|.+.++|.+|++.|||+.+.|+ .|+++|+...+
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~-~fv~f~~~~~a~~a~~~l~gr~~~gr---~i~~~~~~~~~ 214 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVK-IFVEFSIASETHKAIQALNGRWFAGR---KVVAEVYDQER 214 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEE-EEEEESSHHHHHHHHHHHTTCBSSSS---BCEEEECCHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeE-EEEEECCHHHHHHHHHHhcCceECCe---EEEEEEcCHHH
Confidence 56789999999999999998732 2355 99999999999999999999999999 99999986444
No 381
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=6e-08 Score=76.31 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=55.1
Q ss_pred CCCCC-CcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCC-HHHHHHHHHHhC--CCCcCcccCCCCCCCceEEEEee
Q 020065 3 LTLSL-LKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSD-TETASSAKNALD--GRSIPRYLLPENMGPCTLRITYS 78 (331)
Q Consensus 3 ~~~~~-vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~-~e~A~~Av~~ln--g~~~~~~~~~~~~~g~~i~v~~s 78 (331)
+..++ +|+++|+++|+.||+|..|.+.++. ..|||+|.+ .++|..|++.|| +..| .|..+++...
T Consensus 25 ~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i---------~g~~~~~evL 93 (121)
T 1owx_A 25 GDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQL---------RNKEVTWEVL 93 (121)
T ss_dssp ESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCT---------TSSSEEEEEC
T ss_pred cCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEE---------eCcEEEEEEC
Confidence 35677 9999999999999999999988753 259999999 899999999996 4444 7788888765
Q ss_pred c
Q 020065 79 A 79 (331)
Q Consensus 79 ~ 79 (331)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 5
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=1.9e-06 Score=65.48 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=55.1
Q ss_pred CCCCcHHHHHHhhccc-----CceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEE
Q 020065 5 LSLLKVIFILQVFSAF-----GFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRIT 76 (331)
Q Consensus 5 ~~~vtee~L~~lF~~f-----G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~ 76 (331)
+-.|+++.|+.|.+++ |.|.+|++.... +| |+|+|.|..+|.+|.-+|||.+| .||+|+|.
T Consensus 30 pDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~G-Aivef~d~~~AgKasLaL~G~ef---------~gr~Lr~g 95 (117)
T 2l9w_A 30 SDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NG-AIIIFRDSKFAAKMLMILNGSQF---------QGKVIRSG 95 (117)
T ss_dssp CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TE-EEEECSCHHHHHHHHHHHSSEEE---------TTEEEEEE
T ss_pred CCCCCHHHHHHHHhhhhccCccceeEEEEecCC-Cc-eEEEEccchhhHHHHhhcCCeee---------cCeEEEec
Confidence 4578999999999999 999999988753 34 99999999999999999999999 79999996
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=1.3e-05 Score=60.63 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=64.2
Q ss_pred cEEEEEeccCCCCC----CH-HHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEE
Q 020065 127 NVLLASIENMQYAV----TL-DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 201 (331)
Q Consensus 127 ~~l~v~v~nl~~~v----t~-~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v 201 (331)
++|+ |.|++..| .. +.++++|..|+++.....++.-+ ..-|.|.+.++|.+|...||+..+.|+ .|+|
T Consensus 6 ntLi--itnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~ 78 (104)
T 1wey_A 6 SGLI--ACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EMKL 78 (104)
T ss_dssp CEEE--EECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---ECEE
T ss_pred ceEE--EecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc---eeEE
Confidence 4566 66887655 22 57899999999999998888776 689999999999999999999999998 9999
Q ss_pred EeecCCC
Q 020065 202 SYSRHTD 208 (331)
Q Consensus 202 ~~ak~~~ 208 (331)
-|+...+
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998544
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.75 E-value=2.4e-05 Score=59.21 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=53.8
Q ss_pred HHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeecccc
Q 020065 11 IFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHTD 82 (331)
Q Consensus 11 e~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~~ 82 (331)
+.+++||..|+++.....++.= ....|.|.+.|+|.+|...|++..| .|+.|+|-|++...
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f---------~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEF---------LGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEE---------TTEECEEECCCCSS
T ss_pred HHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhcccee---------cCceeEEEecCCCC
Confidence 6789999999999999888722 2499999999999999999999998 79999999998543
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.00079 Score=52.24 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=47.9
Q ss_pred EEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCC
Q 020065 129 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 194 (331)
Q Consensus 129 l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~ 194 (331)
.+|.|+..+... .+.+...|++||+|++.... ....+ -.|+|+++.+|.+|+.. ||..|.+.
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~NW-ihI~Y~s~~~A~rAL~k-NG~ii~g~ 86 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGNW-MHIRYQSKLQARKALSK-DGRIFGES 86 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSSE-EEEEESSHHHHHHHHTT-TTCEETTT
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCCe-EEEEeCCHHHHHHHHHh-CCeEecCC
Confidence 345577776554 56667889999999998873 33344 89999999999999985 99888654
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.09 E-value=0.0016 Score=48.40 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=45.2
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 188 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng 188 (331)
..+++ + +.|.++.-.+|.++|+.||.|. |+-+.+. .|||.|.+++.|..|+..+..
T Consensus 16 ~HVf~--l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~k 71 (100)
T 1whv_A 16 DHVLH--V-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSKY 71 (100)
T ss_dssp CSEEE--E-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHHH
T ss_pred CeEEE--E-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhccc
Confidence 45666 5 8999999999999999999653 4434432 599999999999999998853
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.0042 Score=46.69 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=53.9
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHcc-----CCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEE
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSA-----FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 200 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~-----fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~ 200 (331)
.+++. |.|++..+++|.|.-.|+. =|.|++|..+. + .|+|+|.+.+.|++.++. ..+.|.+. .|.
T Consensus 8 ~~~I~--V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~--~AvItF~d~~va~rVL~k-~~H~L~~~---~Ls 77 (104)
T 2dhx_A 8 GVAVE--VRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--C--GGVLTFREPADAERVLAQ-ADHELHGA---QLS 77 (104)
T ss_dssp CCEEE--EESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--T--EEEEEESSHHHHHHHHTC-SCCBSSSS---BCE
T ss_pred ccEEE--EECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--C--cEEEEEcChHHHHHHhcC-CcceecCe---EEE
Confidence 45666 8899999999999999987 25899998877 2 499999999999998875 24566666 777
Q ss_pred EE
Q 020065 201 IS 202 (331)
Q Consensus 201 v~ 202 (331)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.62 E-value=0.0038 Score=46.51 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=45.2
Q ss_pred cEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCc
Q 020065 127 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 190 (331)
Q Consensus 127 ~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~ 190 (331)
.+|+ + +.|.++.-.+|.++|+.||.| .|+-+.+. .|||.|.+++.|..|+..+....
T Consensus 7 HV~~--l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~~~~ 63 (101)
T 3ctr_A 7 HVLH--V-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSKYAE 63 (101)
T ss_dssp EEEE--E-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHTTCS
T ss_pred eEEE--E-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcccCC
Confidence 4555 4 899999999999999999944 34444443 59999999999999999886444
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.59 E-value=0.017 Score=42.65 Aligned_cols=75 Identities=11% Similarity=0.216 Sum_probs=57.1
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCC--ceEEEEE
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGG--FCKLHIS 202 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~--~~~l~v~ 202 (331)
|.|.+||+++|++++.+..+....+.-......+ .-..|+|.|.+.+++..-.+.++|+.+.+.. ...-.|+
T Consensus 4 vVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE 83 (91)
T 1uw4_A 4 VVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVE 83 (91)
T ss_dssp EEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEE
T ss_pred EEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEE
Confidence 3488999999999999999999877665554322 1135999999999999999999999886541 2234566
Q ss_pred eec
Q 020065 203 YSR 205 (331)
Q Consensus 203 ~ak 205 (331)
||-
T Consensus 84 ~AP 86 (91)
T 1uw4_A 84 FAP 86 (91)
T ss_dssp ECS
T ss_pred EcC
Confidence 653
No 390
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.27 E-value=0.0019 Score=61.96 Aligned_cols=56 Identities=14% Similarity=0.309 Sum_probs=40.1
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHH
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 185 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~ 185 (331)
.+.++|. .+..+++++|.+.|+.||.|.++.+.++++ .+|.|||++.+++..+++.
T Consensus 53 ~rsv~v~---~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH---CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE---ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHSS
T ss_pred cceEEEE---cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHhc
Confidence 3567754 356799999999999999999999888665 4599999999999876543
No 391
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.17 E-value=0.002 Score=61.83 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=36.7
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHH
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNA 53 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ 53 (331)
++.++++++|.+.|++||.|.++.+.+ ..|.||.|||.+.+++.++++.
T Consensus 60 ~~~~~~~~~l~~y~~~~g~i~~~~~~~-~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 60 CPEKISENKFLKYLSQFGPINNHFFYE-SFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp ECCC---CHHHHHHGGGSCCCCEEEEC-SSSEEEEEECC---CCHHHHSS
T ss_pred cCCCCCHHHHHHHHHhcCCcceEEEEc-cCCeEEEEEeCCHHHHHHHHhc
Confidence 356899999999999999999998886 3567999999999999977643
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.01 E-value=0.017 Score=44.73 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=39.5
Q ss_pred HHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 10 VIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 10 ee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
.+.|.+.|++||+|.+..... .++.-.|.|.+..+|++|+. .||+.|
T Consensus 37 ~~~VL~~F~~~G~Iv~~~~~~--~~NWihI~Y~s~~~A~rAL~-kNG~ii 83 (119)
T 1wwh_A 37 ASYILLQFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALS-KDGRIF 83 (119)
T ss_dssp HHHHHHHHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHT-TTTCEE
T ss_pred HHHHHHHHHhhCcEEEeccCC--CCCeEEEEeCCHHHHHHHHH-hCCeEe
Confidence 456778899999999988733 55789999999999999996 599877
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.83 E-value=0.018 Score=42.77 Aligned_cols=45 Identities=29% Similarity=0.254 Sum_probs=36.0
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhC
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALD 55 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ln 55 (331)
+...+||.++|+.||-|.---+-. ..|||.|.+.+.|..|++.++
T Consensus 26 ewKt~DI~~lFs~fggv~I~WidD----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 26 EWKTSDLYQLFSAFGNIQISWIDD----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TCCHHHHHHHHTTTCSCCCEEEET----TEEEEECSCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhccCCEEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 567899999999998654323332 369999999999999999875
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.75 E-value=0.0045 Score=48.66 Aligned_cols=68 Identities=15% Similarity=0.139 Sum_probs=45.8
Q ss_pred EEeccCCCCCCHHHHHHHHccCCCeeEEE-EEc------------------cCCCeeEEEEcCCHHHHHHHHHHhcCCcc
Q 020065 131 ASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFD------------------KNGGLQALIQYPDVQTAVVAKEALEGHCI 191 (331)
Q Consensus 131 v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~-i~~------------------~~~g~~afV~f~~~~~A~~Ai~~lng~~i 191 (331)
|.|+..+.+.+ ..+.+.|++||.|++-. ..+ ...++ ..|.|++..+|.+|+.. ||..|
T Consensus 10 VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NW-ikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 10 ILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSW-TKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp EEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTE-EEEEBSSHHHHHHHHTT-TTCEE
T ss_pred EEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcE-EEEEcCCHHHHHHHHHh-CCeEe
Confidence 44666655544 45557899999998731 111 01233 78999999999999984 89887
Q ss_pred cCCCceEEEEEee
Q 020065 192 YDGGFCKLHISYS 204 (331)
Q Consensus 192 ~~~~~~~l~v~~a 204 (331)
.|. -|-|..-
T Consensus 87 ~G~---mIGV~Py 96 (132)
T 3p3d_A 87 NGV---LLGVIPY 96 (132)
T ss_dssp TTE---ECEEEEC
T ss_pred CcE---EEEEEEC
Confidence 653 6666644
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.48 E-value=0.018 Score=42.95 Aligned_cols=46 Identities=28% Similarity=0.198 Sum_probs=35.8
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCC
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDG 56 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng 56 (331)
+....||.++|+.||-|.---+- . ..|||.|.+.+.|..|++.++-
T Consensus 16 ewKt~Di~~lFs~fggv~I~Wid---D-TsAlvvf~~~~~a~~al~~i~~ 61 (101)
T 3ctr_A 16 EWKTSDLYQLFSAFGNIQISWID---D-TSAFVSLSQPEQVKIAVNTSKY 61 (101)
T ss_dssp TCCHHHHHHHTTTSEEEEEEEEE---T-TEEEEEEEEECHHHHHHHHHTT
T ss_pred hhhhHHHHHHHhccCCEEEEEEc---C-CeEEEEecCHHHHHHHHHhccc
Confidence 56789999999999954322222 2 3699999999999999998863
No 396
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.48 E-value=0.093 Score=39.35 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=38.8
Q ss_pred CCCCCcHHHHHHhhcc-c----CceeEEEEeecCCCceEEEEeCCHHHHHHHHHH
Q 020065 4 TLSLLKVIFILQVFSA-F----GFVHKITTFEKTAGFQALVQFSDTETASSAKNA 53 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~-f----G~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~ 53 (331)
.+-++++|.|.-.|+. - |+|.+|..+. ..|+|+|.+.+.|++.++.
T Consensus 16 lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 16 LPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred CCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 3558899999999997 2 8999998876 3599999999999998863
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.30 E-value=0.21 Score=36.69 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=46.1
Q ss_pred CCCCCcHHHHHHhhcccCceeEEEEeecC------CCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 4 TLSLLKVIFILQVFSAFGFVHKITTFEKT------AGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 4 ~~~~vtee~L~~lF~~fG~V~~i~~~~~~------~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
.+..+|||++++.++...++.-.....++ .-..|+|.|.+.|++..-.+.++|..|
T Consensus 9 LPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F 70 (91)
T 1uw4_A 9 LPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVF 70 (91)
T ss_dssp ECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEE
T ss_pred CCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEE
Confidence 46789999999999999887766555522 113499999999999999999999877
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.99 E-value=0.1 Score=38.72 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=52.6
Q ss_pred EEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccC------CCeeEEEEcCCHHHHHHHHHHhcCCcccCCC--ceEEEE
Q 020065 130 LASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGG--FCKLHI 201 (331)
Q Consensus 130 ~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~------~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~--~~~l~v 201 (331)
.|.|..||+++|++++.+.++..=.+.-......+ .-..|+|.|.+.++...-.+..+|+.+.+.. ...-.|
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~V 90 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVV 90 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEE
Confidence 34589999999999998888775443222221111 1124999999999999999999999886641 335556
Q ss_pred Eee
Q 020065 202 SYS 204 (331)
Q Consensus 202 ~~a 204 (331)
+||
T Consensus 91 E~A 93 (97)
T 2l08_A 91 EFA 93 (97)
T ss_dssp EEC
T ss_pred Eec
Confidence 665
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=92.65 E-value=0.056 Score=42.42 Aligned_cols=61 Identities=11% Similarity=0.166 Sum_probs=43.7
Q ss_pred cHHHHHHhhcccCceeEE-EEee------------c-----CCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCC
Q 020065 9 KVIFILQVFSAFGFVHKI-TTFE------------K-----TAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGP 70 (331)
Q Consensus 9 tee~L~~lF~~fG~V~~i-~~~~------------~-----~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g 70 (331)
....+-+.|++||.|.+- ...+ + ..++.--|+|.+..+|.+|+. .||+.| .|
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii---------~G 88 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF---------NG 88 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE---------TT
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe---------Cc
Confidence 455677889999999762 1111 0 124557899999999999995 699887 67
Q ss_pred ceEEEEeec
Q 020065 71 CTLRITYSA 79 (331)
Q Consensus 71 ~~i~v~~s~ 79 (331)
..|-|..-.
T Consensus 89 ~mIGV~Py~ 97 (132)
T 3p3d_A 89 VLLGVIPYT 97 (132)
T ss_dssp EECEEEECC
T ss_pred EEEEEEECC
Confidence 777776544
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.23 E-value=1.5 Score=42.39 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=44.7
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
..+++ +. .+..+...+|.++|+.||.| +|+-+.+. +|||.|.+.+.|..++..++..
T Consensus 440 ~~vl~--v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLH--VT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEE--EE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEE--Ee-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence 34666 44 66788999999999999954 45544443 6999999999999999998644
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=81.19 E-value=2.2 Score=31.54 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=41.2
Q ss_pred CCCCCCcHHHHHHhhcccCceeEEEEeecC------CCceEEEEeCCHHHHHHHHHHhCCCCc
Q 020065 3 LTLSLLKVIFILQVFSAFGFVHKITTFEKT------AGFQALVQFSDTETASSAKNALDGRSI 59 (331)
Q Consensus 3 ~~~~~vtee~L~~lF~~fG~V~~i~~~~~~------~~~~aFV~f~~~e~A~~Av~~lng~~~ 59 (331)
..+-.+||+++.+.++.+=++.-.....++ .-..|+|.|.+.|+...-.+.++|..|
T Consensus 16 rLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 16 RLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred CCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 356789999999888876444322222211 112499999999999999999999877
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=73.76 E-value=4.9 Score=38.81 Aligned_cols=47 Identities=30% Similarity=0.323 Sum_probs=36.9
Q ss_pred CCcHHHHHHhhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCC
Q 020065 7 LLKVIFILQVFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGR 57 (331)
Q Consensus 7 ~vtee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~ 57 (331)
.+...+|.++|+.||.| +|.-+. ...|||.|.+.++|..+++.++..
T Consensus 450 ~~~~~~i~~~fs~fg~v-~V~wid---dt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 450 EWKTSDLYQLFSAFGNI-QISWID---DTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp TCCHHHHHHHGGGGCCC-EEEECS---SSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhcCCE-EEEEEc---CCeEEEEECCHHHHHHHHHHHHhC
Confidence 55778999999999965 333332 235999999999999999999743
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=61.59 E-value=26 Score=23.86 Aligned_cols=68 Identities=6% Similarity=0.065 Sum_probs=39.9
Q ss_pred EEEEeccCCCCCCHHHHHHHHccCCC-----eeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCCcccCCCceEEEEEe
Q 020065 129 LLASIENMQYAVTLDVLHMVFSAFGP-----VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 203 (331)
Q Consensus 129 l~v~v~nl~~~vt~~~L~~~Fs~fG~-----V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~~~~~~~l~v~~ 203 (331)
|++.++-. ..++..+|...++.-+. |-+|.|+.. +.||+-... .|..+++.|++..+.++ .++|+.
T Consensus 3 ~~i~~Grk-~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g~---~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKK-KKIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKGK---QLKVNK 73 (76)
T ss_dssp EEESCCCC-----CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEeCCCc-cCCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcCc---eEEEEE
Confidence 55555554 35555555555554443 556666554 488877654 57788999999999888 787776
Q ss_pred ec
Q 020065 204 SR 205 (331)
Q Consensus 204 ak 205 (331)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=53.57 E-value=17 Score=24.89 Aligned_cols=57 Identities=7% Similarity=0.153 Sum_probs=35.9
Q ss_pred cHHHHHHhhcccC-----ceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeec
Q 020065 9 KVIFILQVFSAFG-----FVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSA 79 (331)
Q Consensus 9 tee~L~~lF~~fG-----~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~ 79 (331)
+..+|..+++.-+ .|-+|.+.. .+.||+-.. +.|..+++.|++..+ .|+.++|..++
T Consensus 14 ~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~-~~~~~~~~~l~~~~i---------~g~~~~v~~~~ 75 (76)
T 2g0c_A 14 RAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILN-GKGPHVLKVMKNTTV---------KGKQLKVNKAN 75 (76)
T ss_dssp -CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECT-TCHHHHHHHHTTCCC------------CCCEEECC
T ss_pred CHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECH-HHHHHHHHHhccccC---------cCceEEEEECC
Confidence 3445555555433 355666654 479999765 457889999998877 79998887654
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=40.85 E-value=98 Score=22.19 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.1
Q ss_pred CcEEEEEeccCCCCCCHHHHHHHHccCCCeeEEEEEccCCCeeEEEEcCCHHHHHHHHHHhcCC
Q 020065 126 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 189 (331)
Q Consensus 126 ~~~l~v~v~nl~~~vt~~~L~~~Fs~fG~V~~v~i~~~~~g~~afV~f~~~~~A~~Ai~~lng~ 189 (331)
++.+. |-|+|...-..++--.....|----+..+. | +|.|.|.+.++...|+..|-++
T Consensus 12 nclik--iinipqgtlkaevvlavrhlgyefycdyid---g-qamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 12 NCLIK--IINIPQGTLKAEVVLAVRHLGYEFYCDYID---G-QAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp SCEEE--EECCCTTCCHHHHHHHHHTTCCCEEEEECS---S-CEEEEESSHHHHHHHHHHHEET
T ss_pred CcEEE--EEecCCCceeeeeEEeehhcCeeEeeeeec---C-eeEEEecCChHHHHHHHHHHhc
Confidence 55555 789988777766655556666433333333 3 5999999999999999988554
No 406
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=31.71 E-value=31 Score=23.93 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=14.1
Q ss_pred CceeEEEEeecCCCceEEEEeCCHH
Q 020065 21 GFVHKITTFEKTAGFQALVQFSDTE 45 (331)
Q Consensus 21 G~V~~i~~~~~~~~~~aFV~f~~~e 45 (331)
|+|.+|.. .+..|||.|+|..
T Consensus 45 GTI~kV~~----~~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDS----AREVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEET----TTTEEEEEETTSC
T ss_pred EEEEEecc----CCCEEEEEEcCCC
Confidence 66666532 3457999998753
No 407
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=29.42 E-value=1.8e+02 Score=21.92 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHHHccCC-CeeEEEEE-ccCCCeeEEEEcCCHHHHHHHHHHhcCCccc
Q 020065 142 LDVLHMVFSAFG-PVQKIAMF-DKNGGLQALIQYPDVQTAVVAKEALEGHCIY 192 (331)
Q Consensus 142 ~~~L~~~Fs~fG-~V~~v~i~-~~~~g~~afV~f~~~~~A~~Ai~~lng~~i~ 192 (331)
...+.+++...| +|..+..+ ...+. ...|++++.+.|.+++.. .|..+.
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~-~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVA-NVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEE-EEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcE-EEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 344555555555 56665555 32222 356789999999998887 566553
No 408
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=34.97 E-value=12 Score=27.98 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCHHHHHHHHccCCCeeEEEEEccC-CCeeEEE----EcCCHHHHHHHHHHhcC
Q 020065 140 VTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALI----QYPDVQTAVVAKEALEG 188 (331)
Q Consensus 140 vt~~~L~~~Fs~fG~V~~v~i~~~~-~g~~afV----~f~~~~~A~~Ai~~lng 188 (331)
-++++|..+..+.+ +..+.+++.. +|..-|| .|.+.++|.+|++.|-.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 35566777667776 4556666532 2212333 89999999999998853
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.72 E-value=11 Score=30.00 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=18.8
Q ss_pred HHHHHHhhcccCceeEEEEeecCCCceEEEEeCC
Q 020065 10 VIFILQVFSAFGFVHKITTFEKTAGFQALVQFSD 43 (331)
Q Consensus 10 ee~L~~lF~~fG~V~~i~~~~~~~~~~aFV~f~~ 43 (331)
++|+.+||...|+|+-.. ..++|+||+..+
T Consensus 1 ~~~~~~l~~~~G~Vkwfn----~~kGfGFI~~~~ 30 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFN----VRMGFGFLSMTA 30 (148)
T ss_dssp -----CCEEEEEEEEEEE----TTTTEEEEEEEE
T ss_pred CCcccccccceeEEEEEE----CCCCeeEEeeCc
Confidence 467888999889887543 245799999763
No 410
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.26 E-value=22 Score=24.01 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=13.3
Q ss_pred CceeEEEEeecCCCceEEEEeCCH
Q 020065 21 GFVHKITTFEKTAGFQALVQFSDT 44 (331)
Q Consensus 21 G~V~~i~~~~~~~~~~aFV~f~~~ 44 (331)
|+|.+|.. .+..|||.|+|-
T Consensus 28 GtV~kV~~----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET----TTTEEEEEETTT
T ss_pred eEEEEEec----CCcEEEEEEccC
Confidence 66666542 345699999874
No 411
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=25.86 E-value=49 Score=24.17 Aligned_cols=22 Identities=18% Similarity=0.310 Sum_probs=18.5
Q ss_pred CcHHHHHHhhcccCceeEEEEe
Q 020065 8 LKVIFILQVFSAFGFVHKITTF 29 (331)
Q Consensus 8 vtee~L~~lF~~fG~V~~i~~~ 29 (331)
.++|.|+++|+.+|.|+.-.++
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4788899999999999876665
No 412
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=25.21 E-value=49 Score=22.33 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=12.7
Q ss_pred CceeEEEEeecCCCceEEEEeCCH
Q 020065 21 GFVHKITTFEKTAGFQALVQFSDT 44 (331)
Q Consensus 21 G~V~~i~~~~~~~~~~aFV~f~~~ 44 (331)
|+|.+|. ...+.|+|.|.|-
T Consensus 32 gtI~~V~----~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKIN----ILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEE----TTTTEEEEEETTT
T ss_pred eEEEEEc----cCCcEEEEEEccC
Confidence 5555543 2345799999874
No 413
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=24.04 E-value=55 Score=21.42 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=13.4
Q ss_pred CceeEEEEeecCCCceEEEEeCCHH
Q 020065 21 GFVHKITTFEKTAGFQALVQFSDTE 45 (331)
Q Consensus 21 G~V~~i~~~~~~~~~~aFV~f~~~e 45 (331)
|+|.+|. ..+..+||.|.|..
T Consensus 22 GtI~~V~----~~~~~clV~F~D~s 42 (58)
T 4hcz_A 22 GTIKKVD----SAREVCLVQFEDDS 42 (58)
T ss_dssp EEEEEEE----TTTTEEEEEETTSC
T ss_pred EEEEEEe----cCCCEEEEEEcCCC
Confidence 6666553 23447999998743
No 414
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.15 E-value=30 Score=22.97 Aligned_cols=12 Identities=33% Similarity=0.498 Sum_probs=8.8
Q ss_pred CCceEEEEeCCH
Q 020065 33 AGFQALVQFSDT 44 (331)
Q Consensus 33 ~~~~aFV~f~~~ 44 (331)
.+..|||.|+|-
T Consensus 34 ~~~~ClV~FeD~ 45 (63)
T 2e5q_A 34 SKQSCLVTFEDN 45 (63)
T ss_dssp TTSEEEEEETTS
T ss_pred CCCEEEEEEccC
Confidence 345699999874
No 415
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=22.90 E-value=56 Score=31.29 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHhh--cccCceeEEEEee--cC-CCceEEEEeCCHHHHHHHHHH
Q 020065 13 ILQVF--SAFGFVHKITTFE--KT-AGFQALVQFSDTETASSAKNA 53 (331)
Q Consensus 13 L~~lF--~~fG~V~~i~~~~--~~-~~~~aFV~f~~~e~A~~Av~~ 53 (331)
|..|| +.+|.|+++.+.- .. ....+++.|.+.++|.+|++.
T Consensus 218 l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~~ 263 (520)
T 1wvf_A 218 LDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVDA 263 (520)
T ss_dssp CHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHHH
T ss_pred hhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHH
Confidence 56677 3789999886532 21 122478999998887775543
No 416
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=21.47 E-value=47 Score=19.59 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=12.4
Q ss_pred CCcHHHHHHhhccc
Q 020065 7 LLKVIFILQVFSAF 20 (331)
Q Consensus 7 ~vtee~L~~lF~~f 20 (331)
++|.++|+.+|...
T Consensus 21 d~t~~eLk~il~~m 34 (37)
T 1ik9_C 21 DTDLNQLKEVFSGI 34 (37)
T ss_dssp CCCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHc
Confidence 89999999999765
No 417
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=21.35 E-value=58 Score=23.73 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=33.3
Q ss_pred CCCCCCCcHHHHHHhhccc--------CceeEEEEee----------cCCCceEEEEeCCHHHHHHHHH
Q 020065 2 CLTLSLLKVIFILQVFSAF--------GFVHKITTFE----------KTAGFQALVQFSDTETASSAKN 52 (331)
Q Consensus 2 ~~~~~~vtee~L~~lF~~f--------G~V~~i~~~~----------~~~~~~aFV~f~~~e~A~~Av~ 52 (331)
++-..+++++++..+.++| |.|.++.-.- .+.+.|.++.|....++.+-++
T Consensus 8 ~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~ele 76 (101)
T 1cqm_A 8 IVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLA 76 (101)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHH
Confidence 3445577888888777777 4565554321 2356778999988776666555
No 418
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.24 E-value=2.1e+02 Score=20.93 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=41.6
Q ss_pred CcHHHHHH-hhcccCceeEEEEeecCCCceEEEEeCCHHHHHHHHHHhCCCCcCcccCCCCCCCceEEEEeeccc
Q 020065 8 LKVIFILQ-VFSAFGFVHKITTFEKTAGFQALVQFSDTETASSAKNALDGRSIPRYLLPENMGPCTLRITYSAHT 81 (331)
Q Consensus 8 vtee~L~~-lF~~fG~V~~i~~~~~~~~~~aFV~f~~~e~A~~Av~~lng~~~~~~~~~~~~~g~~i~v~~s~~~ 81 (331)
|+=+||.. +=+.||.-.++.+.. . =..|--.+.||-++||+.|+-.. .-+.|+|-.+..+
T Consensus 28 v~f~eL~~Kv~~~fGq~ldL~y~n--~--EllIpl~sQeDLDkaIellDrss----------~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 28 VKLEDLRSKAKIAFGQSMDLHYTN--N--ELVIPLTTQDDLDKAVELLDRSI----------HMKSLKILLVING 88 (103)
T ss_dssp CCHHHHHHHHHHHHSSCEEEEECS--S--SSCEECCSHHHHHHHHHHHHHCS----------SCCSEEEEEEECC
T ss_pred ccHHHHHHHHHHHhCCeeeEEEec--c--eEEEeccCHHHHHHHHHHHccCC----------cccceEEEEecCC
Confidence 44455444 445788878877763 2 38899999999999999988643 3455677655544
Done!