BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020066
         (331 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
 pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
 pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
           Cysteine Substrate Bound
 pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
           Cysteine Substrate Bound
 pdb|1U0B|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase Binary
           Complex With Trnacys
          Length = 461

 Score = 31.2 bits (69), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 8/78 (10%)

Query: 125 SVKNALLRDGSTVRFIH-------IVGVSGTEVTHIAH-RVFMDDDIVSRFPRHIWFSVG 176
            + N L R     + IH       + G++  ++ HI H R F+  D+V+R+ R + + + 
Sbjct: 3   KIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLK 62

Query: 177 KILDLSTVMNVITIRCKE 194
            + +++ + + I  R  E
Sbjct: 63  YVRNITDIDDKIIKRANE 80


>pdb|4EIV|A Chain A, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
           A Putative Deoxyribose-Phosphate Aldolase From
           Toxoplasma Gondii Me49
 pdb|4EIV|B Chain B, 1.37 Angstrom Resolution Crystal Structure Of Apo-Form Of
           A Putative Deoxyribose-Phosphate Aldolase From
           Toxoplasma Gondii Me49
          Length = 297

 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 95  SLKKIVAGQDVESGDLSHRSAETELEGSVDSVK--NALLRDGSTVRFIHIVGVS 146
           +LK +++G +++ GD+  R+A   LEG  D ++  + L    +T+  +H++ ++
Sbjct: 152 TLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIA 205


>pdb|3QYQ|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
 pdb|3QYQ|B Chain B, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
 pdb|3QYQ|C Chain C, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
 pdb|3QYQ|D Chain D, 1.8 Angstrom Resolution Crystal Structure Of A Putative
           Deoxyribose- Phosphate Aldolase From Toxoplasma Gondii
           Me49
          Length = 293

 Score = 28.9 bits (63), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 14/54 (25%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 95  SLKKIVAGQDVESGDLSHRSAETELEGSVDSVK--NALLRDGSTVRFIHIVGVS 146
           +LK +++G +++ GD+  R+A   LEG  D ++  + L    +T+  +H++ ++
Sbjct: 153 TLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIA 206


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,408,113
Number of Sequences: 62578
Number of extensions: 314454
Number of successful extensions: 740
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 737
Number of HSP's gapped (non-prelim): 5
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)