Query 020066
Match_columns 331
No_of_seqs 222 out of 2157
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:44:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.9E-41 8.5E-46 347.0 22.7 287 27-329 28-380 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 6.6E-30 1.4E-34 235.1 8.9 194 122-328 4-219 (287)
3 PLN03210 Resistant to P. syrin 99.9 5.8E-25 1.3E-29 236.2 17.6 197 116-328 183-411 (1153)
4 PF05729 NACHT: NACHT domain 99.1 9E-10 1.9E-14 92.3 10.8 131 138-271 1-162 (166)
5 PF13173 AAA_14: AAA domain 98.8 8.8E-09 1.9E-13 83.4 7.5 120 137-264 2-127 (128)
6 PRK06893 DNA replication initi 98.8 1.5E-08 3.3E-13 90.4 9.4 127 137-275 39-177 (229)
7 COG2256 MGS1 ATPase related to 98.8 6.1E-08 1.3E-12 90.8 11.0 131 125-270 38-174 (436)
8 PRK13342 recombination factor 98.6 5.9E-07 1.3E-11 87.2 13.1 132 126-272 27-164 (413)
9 TIGR03015 pepcterm_ATPase puta 98.6 1.8E-06 4E-11 78.5 14.4 144 122-272 27-205 (269)
10 TIGR02903 spore_lon_C ATP-depe 98.5 2.4E-06 5.1E-11 86.8 15.5 151 117-272 154-366 (615)
11 TIGR03420 DnaA_homol_Hda DnaA 98.5 5.5E-07 1.2E-11 79.8 9.5 136 122-272 25-172 (226)
12 PRK00411 cdc6 cell division co 98.5 2E-06 4.3E-11 82.8 12.6 153 116-272 29-220 (394)
13 cd00009 AAA The AAA+ (ATPases 98.5 1.8E-06 3.9E-11 69.8 10.5 112 125-241 9-131 (151)
14 PRK04841 transcriptional regul 98.4 4.3E-06 9.4E-11 88.8 15.8 141 122-272 18-199 (903)
15 KOG2028 ATPase related to the 98.4 9.9E-07 2.2E-11 81.7 9.3 137 124-271 150-293 (554)
16 PRK05564 DNA polymerase III su 98.4 7.2E-06 1.6E-10 76.6 14.1 148 119-271 6-164 (313)
17 PRK13341 recombination factor 98.4 3.4E-06 7.4E-11 86.8 12.5 133 125-272 42-181 (725)
18 PRK14963 DNA polymerase III su 98.4 3.2E-06 7E-11 83.7 11.5 150 118-272 15-188 (504)
19 PF01637 Arch_ATPase: Archaeal 98.4 9.1E-07 2E-11 78.0 6.8 142 122-272 7-204 (234)
20 PRK07003 DNA polymerase III su 98.3 8.6E-06 1.9E-10 82.9 13.7 150 118-272 17-191 (830)
21 cd01128 rho_factor Transcripti 98.3 2.6E-06 5.7E-11 76.8 7.7 41 137-178 16-56 (249)
22 PRK09087 hypothetical protein; 98.2 8.2E-06 1.8E-10 72.6 9.9 112 137-272 44-166 (226)
23 PRK12323 DNA polymerase III su 98.2 1.6E-05 3.5E-10 79.8 12.8 150 118-272 17-196 (700)
24 PRK14961 DNA polymerase III su 98.2 2.8E-05 6.1E-10 74.2 14.1 151 117-272 16-191 (363)
25 PRK12402 replication factor C 98.2 2.1E-05 4.5E-10 73.9 12.9 150 117-272 15-197 (337)
26 PRK08084 DNA replication initi 98.2 1.2E-05 2.5E-10 72.2 10.5 123 136-272 44-180 (235)
27 PRK09376 rho transcription ter 98.2 2.3E-06 5E-11 81.1 6.2 41 138-179 170-210 (416)
28 PRK08727 hypothetical protein; 98.2 5.9E-06 1.3E-10 73.9 8.3 124 137-273 41-176 (233)
29 TIGR00678 holB DNA polymerase 98.2 4.8E-05 1E-09 65.6 13.6 141 126-271 4-167 (188)
30 PRK06645 DNA polymerase III su 98.2 3.8E-05 8.2E-10 76.0 14.3 150 118-272 22-200 (507)
31 PRK14949 DNA polymerase III su 98.2 2.9E-05 6.2E-10 80.5 13.9 150 118-272 17-191 (944)
32 PRK14957 DNA polymerase III su 98.2 3.8E-05 8.3E-10 76.6 14.1 149 118-271 17-190 (546)
33 PLN03025 replication factor C 98.1 3.6E-05 7.9E-10 72.1 12.8 146 118-272 14-171 (319)
34 PRK14960 DNA polymerase III su 98.1 4.1E-05 8.9E-10 77.1 13.7 150 118-272 16-190 (702)
35 TIGR02928 orc1/cdc6 family rep 98.1 3.3E-05 7.1E-10 73.5 11.7 154 117-272 15-212 (365)
36 TIGR00635 ruvB Holliday juncti 98.1 2.3E-05 4.9E-10 72.8 10.2 141 118-272 5-172 (305)
37 PRK00440 rfc replication facto 98.1 9.1E-05 2E-09 69.0 13.6 148 118-272 18-174 (319)
38 PRK14962 DNA polymerase III su 98.0 8.1E-05 1.8E-09 73.3 13.6 150 118-272 15-189 (472)
39 PRK00080 ruvB Holliday junctio 98.0 2.9E-05 6.3E-10 73.0 9.9 143 117-273 25-194 (328)
40 PRK14951 DNA polymerase III su 98.0 7.4E-05 1.6E-09 75.5 13.3 151 117-272 16-196 (618)
41 PF13401 AAA_22: AAA domain; P 98.0 3.4E-06 7.3E-11 67.9 3.0 101 136-239 3-125 (131)
42 PRK07994 DNA polymerase III su 98.0 8.2E-05 1.8E-09 75.4 13.3 151 117-272 16-191 (647)
43 PF00004 AAA: ATPase family as 98.0 1.8E-05 3.9E-10 63.4 6.9 96 140-240 1-112 (132)
44 PRK05642 DNA replication initi 98.0 2.8E-05 6E-10 69.6 8.6 124 137-273 45-180 (234)
45 PRK08691 DNA polymerase III su 98.0 0.0001 2.2E-09 74.8 13.2 150 118-272 17-191 (709)
46 TIGR02881 spore_V_K stage V sp 98.0 8.5E-05 1.8E-09 67.6 11.6 130 136-272 41-191 (261)
47 PRK07940 DNA polymerase III su 97.9 0.00025 5.4E-09 68.3 14.4 132 137-271 36-188 (394)
48 PRK06620 hypothetical protein; 97.9 3.6E-05 7.8E-10 67.9 7.9 109 138-272 45-160 (214)
49 PRK14969 DNA polymerase III su 97.9 0.00015 3.3E-09 72.4 13.2 150 117-271 16-190 (527)
50 PRK14958 DNA polymerase III su 97.9 0.00018 3.8E-09 71.6 13.5 149 117-270 16-189 (509)
51 TIGR01242 26Sp45 26S proteasom 97.9 3E-05 6.6E-10 74.0 7.6 128 137-274 156-308 (364)
52 TIGR02880 cbbX_cfxQ probable R 97.9 7.7E-05 1.7E-09 68.8 9.9 127 139-272 60-208 (284)
53 PF05496 RuvB_N: Holliday junc 97.9 0.00019 4.1E-09 63.2 11.7 128 134-272 47-192 (233)
54 TIGR02397 dnaX_nterm DNA polym 97.9 0.00031 6.7E-09 66.6 14.2 149 118-272 15-189 (355)
55 PRK14956 DNA polymerase III su 97.9 0.00019 4.1E-09 70.2 12.8 149 118-272 19-193 (484)
56 PHA02544 44 clamp loader, smal 97.9 0.00026 5.7E-09 66.0 13.3 138 118-269 22-170 (316)
57 PRK07764 DNA polymerase III su 97.9 0.00023 5.1E-09 74.4 14.0 147 118-270 16-190 (824)
58 PRK11331 5-methylcytosine-spec 97.9 0.00014 3.1E-09 70.3 11.4 98 122-223 183-297 (459)
59 PRK14955 DNA polymerase III su 97.8 0.00023 5.1E-09 68.7 12.8 152 117-272 16-199 (397)
60 PRK07471 DNA polymerase III su 97.8 0.00048 1E-08 65.7 14.6 153 116-272 18-213 (365)
61 PRK05896 DNA polymerase III su 97.8 0.00029 6.3E-09 70.7 13.5 150 118-272 17-191 (605)
62 PF00308 Bac_DnaA: Bacterial d 97.8 5.8E-05 1.3E-09 66.9 7.8 132 136-273 33-180 (219)
63 PRK14964 DNA polymerase III su 97.8 0.00038 8.2E-09 68.6 13.5 150 118-272 14-188 (491)
64 CHL00181 cbbX CbbX; Provisiona 97.8 0.00023 5E-09 65.7 11.0 127 139-272 61-209 (287)
65 PRK14959 DNA polymerase III su 97.8 0.00048 1E-08 69.5 14.0 150 118-272 17-191 (624)
66 TIGR00767 rho transcription te 97.8 6.7E-05 1.5E-09 71.5 7.3 72 138-210 169-266 (415)
67 COG1373 Predicted ATPase (AAA+ 97.8 0.00045 9.9E-09 66.7 13.0 117 139-266 39-161 (398)
68 PF04665 Pox_A32: Poxvirus A32 97.8 0.0002 4.3E-09 64.0 9.7 36 138-175 14-49 (241)
69 PRK14970 DNA polymerase III su 97.8 0.00065 1.4E-08 64.9 14.0 150 118-272 18-180 (367)
70 PRK09112 DNA polymerase III su 97.7 0.0009 2E-08 63.5 14.7 154 115-272 21-213 (351)
71 PRK05707 DNA polymerase III su 97.7 0.00076 1.6E-08 63.4 14.1 134 135-271 20-177 (328)
72 PRK14952 DNA polymerase III su 97.7 0.00099 2.2E-08 67.2 14.7 149 118-271 14-189 (584)
73 PRK12422 chromosomal replicati 97.7 0.00011 2.3E-09 72.0 7.6 130 137-272 141-284 (445)
74 COG2909 MalT ATP-dependent tra 97.7 0.0005 1.1E-08 70.4 12.2 146 122-272 23-207 (894)
75 PRK09111 DNA polymerase III su 97.7 0.00077 1.7E-08 68.2 13.6 150 118-272 25-204 (598)
76 PRK08903 DnaA regulatory inact 97.7 0.00014 3.1E-09 64.6 7.5 118 136-270 41-168 (227)
77 PRK14954 DNA polymerase III su 97.7 0.00097 2.1E-08 67.7 14.2 148 118-271 17-198 (620)
78 PRK14086 dnaA chromosomal repl 97.7 0.00014 3.1E-09 73.0 8.0 131 137-273 314-460 (617)
79 PRK14087 dnaA chromosomal repl 97.6 0.00015 3.3E-09 71.0 7.9 132 137-272 141-288 (450)
80 PRK08116 hypothetical protein; 97.6 3.4E-05 7.4E-10 70.5 3.0 98 139-240 116-221 (268)
81 smart00382 AAA ATPases associa 97.6 0.00037 8E-09 55.5 8.8 73 138-212 3-91 (148)
82 PRK04195 replication factor C 97.6 0.00048 1E-08 68.3 11.2 144 118-272 15-173 (482)
83 PRK14953 DNA polymerase III su 97.6 0.0018 3.9E-08 64.1 14.9 150 118-272 17-191 (486)
84 PRK14950 DNA polymerase III su 97.6 0.0017 3.7E-08 65.9 14.5 151 117-272 16-192 (585)
85 PRK08058 DNA polymerase III su 97.6 0.0016 3.5E-08 61.3 13.4 132 136-271 27-181 (329)
86 TIGR00362 DnaA chromosomal rep 97.6 0.0004 8.7E-09 67.2 9.4 133 137-273 136-282 (405)
87 PRK06305 DNA polymerase III su 97.5 0.0017 3.7E-08 63.7 13.3 148 117-271 17-192 (451)
88 PRK00149 dnaA chromosomal repl 97.5 0.00064 1.4E-08 66.8 10.3 131 137-273 148-294 (450)
89 PRK08118 topology modulation p 97.5 0.00019 4.2E-09 60.8 5.6 66 139-210 3-69 (167)
90 PRK14965 DNA polymerase III su 97.5 0.002 4.4E-08 65.2 13.8 150 117-270 16-189 (576)
91 PRK14971 DNA polymerase III su 97.5 0.0022 4.8E-08 65.3 14.1 149 118-272 18-193 (614)
92 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0008 1.7E-08 71.0 11.1 146 118-270 188-361 (852)
93 PRK08451 DNA polymerase III su 97.5 0.003 6.5E-08 62.9 14.5 147 118-271 15-188 (535)
94 PRK03992 proteasome-activating 97.5 0.00084 1.8E-08 64.7 10.4 128 136-273 164-316 (389)
95 PF13177 DNA_pol3_delta2: DNA 97.4 0.002 4.4E-08 54.3 11.2 120 137-260 19-162 (162)
96 TIGR03689 pup_AAA proteasome A 97.4 0.00079 1.7E-08 66.7 9.8 134 137-272 216-378 (512)
97 PRK14088 dnaA chromosomal repl 97.4 0.00026 5.7E-09 69.3 6.3 131 137-273 130-277 (440)
98 PRK08181 transposase; Validate 97.4 0.00029 6.2E-09 64.3 6.0 98 138-240 107-209 (269)
99 PRK07133 DNA polymerase III su 97.4 0.0035 7.6E-08 64.4 14.3 150 118-271 19-189 (725)
100 PRK10536 hypothetical protein; 97.4 0.0011 2.3E-08 59.8 9.3 110 122-240 63-213 (262)
101 TIGR02639 ClpA ATP-dependent C 97.4 0.0013 2.7E-08 68.6 11.3 147 118-271 183-357 (731)
102 PRK07261 topology modulation p 97.4 0.00043 9.4E-09 58.8 6.1 66 139-210 2-68 (171)
103 PF01695 IstB_IS21: IstB-like 97.3 0.00026 5.7E-09 60.6 4.6 90 137-240 47-150 (178)
104 PF02562 PhoH: PhoH-like prote 97.3 0.00099 2.1E-08 58.2 8.2 109 124-240 10-156 (205)
105 PRK06647 DNA polymerase III su 97.3 0.0055 1.2E-07 61.8 14.4 149 118-272 17-191 (563)
106 PRK12377 putative replication 97.3 0.00065 1.4E-08 61.3 6.9 98 137-239 101-205 (248)
107 PRK14948 DNA polymerase III su 97.3 0.0056 1.2E-07 62.4 14.2 149 118-270 17-191 (620)
108 PRK13695 putative NTPase; Prov 97.3 0.00095 2.1E-08 56.7 7.4 22 139-160 2-23 (174)
109 PTZ00454 26S protease regulato 97.2 0.0019 4.2E-08 62.3 9.4 129 136-272 178-329 (398)
110 CHL00095 clpC Clp protease ATP 97.2 0.0019 4.2E-08 68.1 10.2 146 118-270 180-352 (821)
111 PRK06921 hypothetical protein; 97.2 0.00038 8.2E-09 63.5 4.3 99 137-239 117-224 (266)
112 PRK05563 DNA polymerase III su 97.2 0.01 2.2E-07 59.9 14.8 150 117-272 16-191 (559)
113 CHL00176 ftsH cell division pr 97.2 0.0037 8.1E-08 63.8 11.5 141 122-272 194-366 (638)
114 PRK06871 DNA polymerase III su 97.1 0.014 3.1E-07 54.7 14.3 133 137-272 24-179 (325)
115 PRK09183 transposase/IS protei 97.1 0.00025 5.5E-09 64.4 2.6 98 138-240 103-206 (259)
116 PRK06526 transposase; Provisio 97.1 0.00017 3.7E-09 65.3 1.3 23 138-160 99-121 (254)
117 PHA00729 NTP-binding motif con 97.1 0.004 8.6E-08 55.1 9.9 33 126-160 8-40 (226)
118 TIGR01241 FtsH_fam ATP-depende 97.1 0.0031 6.8E-08 62.7 10.3 125 138-272 89-238 (495)
119 PRK07952 DNA replication prote 97.1 0.00066 1.4E-08 61.1 4.9 99 137-239 99-204 (244)
120 COG0593 DnaA ATPase involved i 97.1 0.0013 2.9E-08 63.0 7.1 129 136-273 112-258 (408)
121 PRK08939 primosomal protein Dn 97.1 0.0013 2.8E-08 61.3 6.5 97 137-238 156-259 (306)
122 PF13207 AAA_17: AAA domain; P 97.0 0.00048 1E-08 54.5 3.0 22 139-160 1-22 (121)
123 TIGR02640 gas_vesic_GvpN gas v 97.0 0.011 2.5E-07 53.7 12.4 70 200-272 106-198 (262)
124 TIGR02902 spore_lonB ATP-depen 97.0 0.0052 1.1E-07 61.7 11.0 151 118-272 66-276 (531)
125 PTZ00112 origin recognition co 97.0 0.0063 1.4E-07 63.3 11.5 148 122-273 763-950 (1164)
126 PF00910 RNA_helicase: RNA hel 97.0 0.0023 5E-08 49.9 6.6 21 140-160 1-21 (107)
127 cd03216 ABC_Carb_Monos_I This 97.0 0.0052 1.1E-07 51.7 9.2 102 138-243 27-145 (163)
128 PRK11034 clpA ATP-dependent Cl 97.0 0.0044 9.6E-08 64.5 10.3 148 118-271 187-361 (758)
129 PTZ00361 26 proteosome regulat 97.0 0.0024 5.1E-08 62.3 7.8 128 137-272 217-367 (438)
130 KOG0741 AAA+-type ATPase [Post 97.0 0.0054 1.2E-07 60.0 9.8 130 136-276 537-691 (744)
131 cd01131 PilT Pilus retraction 96.9 0.007 1.5E-07 52.7 9.6 99 139-245 3-114 (198)
132 cd01120 RecA-like_NTPases RecA 96.9 0.0034 7.3E-08 51.7 7.3 38 139-178 1-38 (165)
133 KOG0989 Replication factor C, 96.9 0.0064 1.4E-07 55.7 9.1 147 122-273 44-202 (346)
134 TIGR02639 ClpA ATP-dependent C 96.9 0.0076 1.6E-07 62.9 11.0 94 137-238 484-602 (731)
135 PRK10865 protein disaggregatio 96.9 0.0062 1.4E-07 64.5 10.4 100 137-239 598-720 (857)
136 COG2884 FtsE Predicted ATPase 96.9 0.0089 1.9E-07 51.3 9.2 54 191-247 147-204 (223)
137 PRK06964 DNA polymerase III su 96.8 0.019 4.1E-07 54.3 12.4 72 197-271 130-203 (342)
138 cd03228 ABCC_MRP_Like The MRP 96.8 0.0098 2.1E-07 50.3 9.6 105 137-245 28-160 (171)
139 TIGR03346 chaperone_ClpB ATP-d 96.8 0.01 2.3E-07 62.9 11.7 117 118-239 566-717 (852)
140 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0066 1.4E-07 64.4 10.2 147 118-271 174-348 (852)
141 PRK07993 DNA polymerase III su 96.8 0.038 8.2E-07 52.1 14.3 143 125-271 13-179 (334)
142 PRK06090 DNA polymerase III su 96.8 0.043 9.4E-07 51.3 14.5 132 136-271 24-179 (319)
143 PTZ00202 tuzin; Provisional 96.8 0.023 5E-07 55.1 12.7 145 115-271 260-433 (550)
144 PRK07667 uridine kinase; Provi 96.8 0.0018 3.9E-08 56.2 4.9 38 123-160 3-40 (193)
145 COG1136 SalX ABC-type antimicr 96.8 0.0095 2.1E-07 52.7 9.5 22 138-159 32-53 (226)
146 CHL00195 ycf46 Ycf46; Provisio 96.8 0.014 3E-07 57.8 11.7 128 137-272 259-405 (489)
147 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.8 0.01 2.2E-07 48.9 9.0 98 138-244 27-131 (144)
148 PRK10865 protein disaggregatio 96.8 0.0071 1.5E-07 64.0 10.0 147 118-271 179-353 (857)
149 PF07728 AAA_5: AAA domain (dy 96.8 0.0034 7.4E-08 51.0 6.1 79 140-224 2-90 (139)
150 cd03246 ABCC_Protease_Secretio 96.8 0.0098 2.1E-07 50.4 9.1 103 138-244 29-160 (173)
151 PRK08769 DNA polymerase III su 96.8 0.037 8E-07 51.8 13.6 132 137-271 26-184 (319)
152 PRK06835 DNA replication prote 96.8 0.0011 2.5E-08 62.2 3.5 97 138-239 184-288 (329)
153 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0071 1.5E-07 64.0 9.7 117 118-239 567-718 (852)
154 PF14532 Sigma54_activ_2: Sigm 96.8 0.0034 7.4E-08 51.2 5.9 85 139-239 23-109 (138)
155 PRK06696 uridine kinase; Valid 96.7 0.0019 4.1E-08 57.3 4.6 37 124-160 8-45 (223)
156 COG4618 ArpD ABC-type protease 96.7 0.0045 9.8E-08 60.3 7.4 22 138-159 363-384 (580)
157 PRK08699 DNA polymerase III su 96.7 0.022 4.7E-07 53.6 11.8 132 137-271 21-184 (325)
158 PRK10787 DNA-binding ATP-depen 96.7 0.0077 1.7E-07 63.1 9.4 144 122-273 330-507 (784)
159 cd03230 ABC_DR_subfamily_A Thi 96.7 0.011 2.3E-07 50.2 8.7 105 138-244 27-159 (173)
160 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0034 7.3E-08 57.3 5.8 41 138-180 70-111 (274)
161 cd03214 ABC_Iron-Siderophores_ 96.7 0.01 2.3E-07 50.6 8.5 102 138-243 26-161 (180)
162 COG3903 Predicted ATPase [Gene 96.6 0.0007 1.5E-08 64.2 1.2 128 135-272 12-155 (414)
163 cd03247 ABCC_cytochrome_bd The 96.6 0.012 2.6E-07 50.1 8.5 104 138-244 29-161 (178)
164 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0065 1.4E-07 54.0 7.2 45 136-180 18-66 (235)
165 CHL00095 clpC Clp protease ATP 96.6 0.02 4.3E-07 60.6 11.7 97 137-239 539-661 (821)
166 cd03222 ABC_RNaseL_inhibitor T 96.6 0.024 5.2E-07 48.5 10.2 104 137-244 25-136 (177)
167 PF05659 RPW8: Arabidopsis bro 96.6 0.037 8E-07 45.8 10.9 99 2-100 3-114 (147)
168 PRK07399 DNA polymerase III su 96.6 0.054 1.2E-06 50.7 13.3 150 118-272 5-195 (314)
169 PF13191 AAA_16: AAA ATPase do 96.6 0.0021 4.5E-08 54.6 3.5 43 119-161 2-48 (185)
170 KOG0734 AAA+-type ATPase conta 96.6 0.013 2.9E-07 57.4 9.1 83 122-210 315-407 (752)
171 cd00267 ABC_ATPase ABC (ATP-bi 96.5 0.015 3.3E-07 48.3 8.6 106 138-246 26-146 (157)
172 PLN00020 ribulose bisphosphate 96.5 0.0047 1E-07 58.5 5.8 71 135-210 146-223 (413)
173 TIGR00763 lon ATP-dependent pr 96.5 0.011 2.3E-07 62.2 8.9 143 122-272 328-505 (775)
174 cd03263 ABC_subfamily_A The AB 96.5 0.018 3.9E-07 50.7 9.2 23 138-160 29-51 (220)
175 TIGR01243 CDC48 AAA family ATP 96.5 0.017 3.7E-07 60.3 10.2 128 137-272 487-635 (733)
176 PF05673 DUF815: Protein of un 96.4 0.041 8.9E-07 49.2 10.9 98 136-241 51-152 (249)
177 COG2607 Predicted ATPase (AAA+ 96.4 0.082 1.8E-06 47.1 12.5 97 136-240 84-183 (287)
178 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.021 4.5E-07 51.5 9.1 22 138-159 31-52 (254)
179 TIGR02237 recomb_radB DNA repa 96.4 0.0071 1.5E-07 52.8 6.0 40 136-177 11-50 (209)
180 cd03283 ABC_MutS-like MutS-lik 96.4 0.037 7.9E-07 48.2 10.2 106 138-246 26-154 (199)
181 PF13238 AAA_18: AAA domain; P 96.4 0.0027 5.8E-08 50.4 2.8 21 140-160 1-21 (129)
182 COG1484 DnaC DNA replication p 96.4 0.0066 1.4E-07 55.0 5.6 79 136-217 104-185 (254)
183 PRK04132 replication factor C 96.4 0.032 7E-07 58.5 11.4 120 145-272 574-702 (846)
184 cd03269 ABC_putative_ATPase Th 96.4 0.029 6.2E-07 49.0 9.6 23 138-160 27-49 (210)
185 cd01393 recA_like RecA is a b 96.4 0.019 4.2E-07 50.6 8.5 46 136-181 18-67 (226)
186 cd01878 HflX HflX subfamily. 96.3 0.16 3.5E-06 43.9 14.2 58 82-161 8-65 (204)
187 COG0396 sufC Cysteine desulfur 96.3 0.019 4.1E-07 50.7 8.1 55 198-252 161-216 (251)
188 PRK13539 cytochrome c biogenes 96.3 0.025 5.4E-07 49.4 9.0 24 137-160 28-51 (207)
189 PRK09361 radB DNA repair and r 96.3 0.0079 1.7E-07 53.2 5.9 39 136-176 22-60 (225)
190 COG0572 Udk Uridine kinase [Nu 96.3 0.0091 2E-07 52.4 6.1 26 135-160 6-31 (218)
191 PF00485 PRK: Phosphoribulokin 96.3 0.003 6.5E-08 54.7 3.0 22 139-160 1-22 (194)
192 PRK13540 cytochrome c biogenes 96.3 0.027 5.8E-07 48.9 8.9 24 137-160 27-50 (200)
193 TIGR02858 spore_III_AA stage I 96.3 0.052 1.1E-06 49.6 11.1 113 121-244 96-233 (270)
194 cd03229 ABC_Class3 This class 96.3 0.023 5E-07 48.3 8.3 22 138-159 27-48 (178)
195 PRK05480 uridine/cytidine kina 96.3 0.0036 7.9E-08 54.8 3.4 26 135-160 4-29 (209)
196 cd03244 ABCC_MRP_domain2 Domai 96.3 0.031 6.8E-07 49.2 9.4 22 138-159 31-52 (221)
197 KOG2543 Origin recognition com 96.3 0.044 9.6E-07 51.8 10.5 56 122-182 14-70 (438)
198 COG0470 HolB ATPase involved i 96.3 0.052 1.1E-06 50.4 11.3 136 122-260 9-169 (325)
199 COG1875 NYN ribonuclease and A 96.3 0.0074 1.6E-07 56.6 5.3 106 127-238 237-386 (436)
200 PF08423 Rad51: Rad51; InterP 96.3 0.0096 2.1E-07 54.0 6.1 45 138-182 39-87 (256)
201 TIGR01243 CDC48 AAA family ATP 96.2 0.023 5.1E-07 59.3 9.7 128 137-271 212-358 (733)
202 cd03264 ABC_drug_resistance_li 96.2 0.037 8E-07 48.4 9.6 21 139-159 27-47 (211)
203 KOG0735 AAA+-type ATPase [Post 96.2 0.0076 1.6E-07 60.9 5.6 70 138-210 432-505 (952)
204 PRK10733 hflB ATP-dependent me 96.2 0.024 5.3E-07 58.2 9.6 126 139-272 187-335 (644)
205 TIGR00960 3a0501s02 Type II (G 96.2 0.026 5.6E-07 49.6 8.5 22 138-159 30-51 (216)
206 PRK04296 thymidine kinase; Pro 96.2 0.039 8.5E-07 47.6 9.5 98 138-241 3-117 (190)
207 TIGR00235 udk uridine kinase. 96.2 0.004 8.7E-08 54.5 3.4 26 135-160 4-29 (207)
208 PRK08233 hypothetical protein; 96.2 0.0038 8.3E-08 53.0 3.1 24 137-160 3-26 (182)
209 KOG1969 DNA replication checkp 96.2 0.019 4.1E-07 58.3 8.2 81 134-223 323-411 (877)
210 PRK06547 hypothetical protein; 96.2 0.0071 1.5E-07 51.5 4.6 27 134-160 12-38 (172)
211 TIGR03740 galliderm_ABC gallid 96.2 0.032 6.9E-07 49.3 9.0 22 138-159 27-48 (223)
212 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.029 6.3E-07 49.7 8.6 23 138-160 49-71 (224)
213 cd03266 ABC_NatA_sodium_export 96.2 0.028 6E-07 49.4 8.4 22 138-159 32-53 (218)
214 cd03215 ABC_Carb_Monos_II This 96.2 0.037 8E-07 47.3 9.0 23 138-160 27-49 (182)
215 PF07693 KAP_NTPase: KAP famil 96.2 0.11 2.4E-06 48.3 13.0 37 124-160 6-43 (325)
216 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.2 0.045 9.8E-07 48.8 9.9 24 137-160 29-52 (238)
217 TIGR03864 PQQ_ABC_ATP ABC tran 96.1 0.027 5.9E-07 50.2 8.4 23 137-159 27-49 (236)
218 KOG0733 Nuclear AAA ATPase (VC 96.1 0.017 3.7E-07 57.5 7.5 67 137-210 223-293 (802)
219 cd03231 ABC_CcmA_heme_exporter 96.1 0.041 8.8E-07 47.8 9.3 23 137-159 26-48 (201)
220 cd03252 ABCC_Hemolysin The ABC 96.1 0.042 9.2E-07 48.9 9.6 23 137-159 28-50 (237)
221 PRK13538 cytochrome c biogenes 96.1 0.033 7.1E-07 48.5 8.6 23 138-160 28-50 (204)
222 COG1474 CDC6 Cdc6-related prot 96.1 0.049 1.1E-06 52.0 10.3 147 122-272 25-203 (366)
223 PRK13650 cbiO cobalt transport 96.1 0.031 6.7E-07 51.3 8.8 23 137-159 33-55 (279)
224 TIGR03608 L_ocin_972_ABC putat 96.1 0.039 8.4E-07 47.9 9.0 22 138-159 25-46 (206)
225 PRK11248 tauB taurine transpor 96.1 0.057 1.2E-06 48.8 10.4 23 138-160 28-50 (255)
226 cd03268 ABC_BcrA_bacitracin_re 96.1 0.04 8.6E-07 48.0 9.0 23 137-159 26-48 (208)
227 PRK06217 hypothetical protein; 96.1 0.013 2.7E-07 50.3 5.8 34 139-173 3-38 (183)
228 COG2274 SunT ABC-type bacterio 96.1 0.025 5.5E-07 58.5 8.9 23 137-159 499-521 (709)
229 cd03253 ABCC_ATM1_transporter 96.1 0.048 1E-06 48.5 9.7 23 138-160 28-50 (236)
230 cd03265 ABC_DrrA DrrA is the A 96.1 0.036 7.8E-07 48.8 8.8 23 138-160 27-49 (220)
231 PF00158 Sigma54_activat: Sigm 96.1 0.063 1.4E-06 45.5 9.9 110 123-240 8-144 (168)
232 TIGR03522 GldA_ABC_ATP gliding 96.1 0.043 9.2E-07 51.0 9.7 23 138-160 29-51 (301)
233 cd03223 ABCD_peroxisomal_ALDP 96.1 0.1 2.2E-06 43.9 11.2 102 138-244 28-152 (166)
234 PRK06762 hypothetical protein; 96.1 0.0048 1E-07 51.8 3.0 23 138-160 3-25 (166)
235 TIGR02868 CydC thiol reductant 96.1 0.048 1E-06 54.7 10.7 24 136-159 360-383 (529)
236 KOG1532 GTPase XAB1, interacts 96.1 0.0092 2E-07 53.9 4.8 27 135-161 17-43 (366)
237 COG1124 DppF ABC-type dipeptid 96.1 0.044 9.6E-07 48.8 9.0 22 138-159 34-55 (252)
238 PF12775 AAA_7: P-loop contain 96.1 0.0087 1.9E-07 54.8 4.8 86 122-216 21-117 (272)
239 PF13604 AAA_30: AAA domain; P 96.1 0.026 5.7E-07 49.0 7.6 148 125-297 8-170 (196)
240 PF13671 AAA_33: AAA domain; P 96.0 0.0053 1.2E-07 49.9 3.0 22 139-160 1-22 (143)
241 COG4088 Predicted nucleotide k 96.0 0.047 1E-06 47.5 8.7 116 138-272 2-139 (261)
242 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.064 1.4E-06 47.2 10.1 106 137-246 29-160 (213)
243 PRK07132 DNA polymerase III su 96.0 0.19 4E-06 46.7 13.5 129 136-271 17-161 (299)
244 cd03254 ABCC_Glucan_exporter_l 96.0 0.048 1E-06 48.3 9.3 22 138-159 30-51 (229)
245 cd03243 ABC_MutS_homologs The 96.0 0.085 1.8E-06 45.9 10.7 104 138-247 30-158 (202)
246 PRK12608 transcription termina 96.0 0.02 4.4E-07 54.4 7.1 54 124-179 121-175 (380)
247 cd03225 ABC_cobalt_CbiO_domain 96.0 0.037 8E-07 48.3 8.4 23 137-159 27-49 (211)
248 PRK05541 adenylylsulfate kinas 96.0 0.0067 1.4E-07 51.5 3.6 36 136-173 6-41 (176)
249 PTZ00301 uridine kinase; Provi 96.0 0.0055 1.2E-07 53.9 3.1 23 137-159 3-25 (210)
250 COG1120 FepC ABC-type cobalami 96.0 0.041 8.8E-07 49.8 8.6 23 137-159 28-50 (258)
251 PRK06067 flagellar accessory p 96.0 0.021 4.6E-07 50.9 6.8 24 136-159 24-47 (234)
252 PRK13543 cytochrome c biogenes 96.0 0.046 1E-06 48.0 8.9 23 138-160 38-60 (214)
253 cd03259 ABC_Carb_Solutes_like 95.9 0.039 8.3E-07 48.3 8.3 22 138-159 27-48 (213)
254 cd03251 ABCC_MsbA MsbA is an e 95.9 0.058 1.2E-06 47.9 9.5 23 137-159 28-50 (234)
255 COG4608 AppF ABC-type oligopep 95.9 0.033 7.1E-07 50.4 7.8 107 137-248 39-178 (268)
256 PRK13657 cyclic beta-1,2-gluca 95.9 0.035 7.5E-07 56.5 9.0 23 137-159 361-383 (588)
257 cd03267 ABC_NatA_like Similar 95.9 0.042 9.2E-07 49.0 8.6 22 138-159 48-69 (236)
258 TIGR01188 drrA daunorubicin re 95.9 0.045 9.7E-07 50.8 9.0 22 138-159 20-41 (302)
259 cd03238 ABC_UvrA The excision 95.9 0.044 9.4E-07 46.8 8.2 107 137-244 21-153 (176)
260 cd03369 ABCC_NFT1 Domain 2 of 95.9 0.054 1.2E-06 47.2 9.0 22 138-159 35-56 (207)
261 TIGR00968 3a0106s01 sulfate AB 95.9 0.041 8.9E-07 49.1 8.4 23 138-160 27-49 (237)
262 PRK11034 clpA ATP-dependent Cl 95.9 0.033 7.1E-07 58.1 8.7 81 137-225 488-583 (758)
263 cd01394 radB RadB. The archaea 95.9 0.018 3.8E-07 50.7 5.9 24 136-159 18-41 (218)
264 cd03224 ABC_TM1139_LivF_branch 95.9 0.05 1.1E-06 47.8 8.8 23 137-159 26-48 (222)
265 TIGR03375 type_I_sec_LssB type 95.9 0.038 8.3E-07 57.3 9.2 22 138-159 492-513 (694)
266 TIGR01360 aden_kin_iso1 adenyl 95.9 0.0063 1.4E-07 51.9 2.9 25 136-160 2-26 (188)
267 TIGR01277 thiQ thiamine ABC tr 95.9 0.048 1E-06 47.8 8.6 24 137-160 24-47 (213)
268 COG2255 RuvB Holliday junction 95.9 0.076 1.7E-06 48.4 9.8 142 117-272 26-194 (332)
269 PF03029 ATP_bind_1: Conserved 95.9 0.015 3.3E-07 52.2 5.4 35 142-178 1-35 (238)
270 TIGR02314 ABC_MetN D-methionin 95.8 0.041 8.9E-07 52.1 8.5 22 138-159 32-53 (343)
271 TIGR02857 CydD thiol reductant 95.8 0.054 1.2E-06 54.3 9.9 23 137-159 348-370 (529)
272 cd03301 ABC_MalK_N The N-termi 95.8 0.045 9.8E-07 47.8 8.3 23 138-160 27-49 (213)
273 TIGR01189 ccmA heme ABC export 95.8 0.058 1.2E-06 46.7 8.7 24 137-160 26-49 (198)
274 cd03293 ABC_NrtD_SsuB_transpor 95.8 0.059 1.3E-06 47.4 8.9 23 138-160 31-53 (220)
275 COG0542 clpA ATP-binding subun 95.8 0.013 2.7E-07 60.6 5.0 95 135-238 519-642 (786)
276 PRK03839 putative kinase; Prov 95.8 0.0071 1.5E-07 51.5 2.8 23 139-161 2-24 (180)
277 cd03292 ABC_FtsE_transporter F 95.8 0.069 1.5E-06 46.7 9.1 23 138-160 28-50 (214)
278 cd03300 ABC_PotA_N PotA is an 95.8 0.047 1E-06 48.5 8.2 23 138-160 27-49 (232)
279 cd02019 NK Nucleoside/nucleoti 95.8 0.0071 1.5E-07 43.2 2.3 22 139-160 1-22 (69)
280 cd03218 ABC_YhbG The ABC trans 95.8 0.056 1.2E-06 47.9 8.6 22 138-159 27-48 (232)
281 COG1618 Predicted nucleotide k 95.7 0.0088 1.9E-07 49.9 3.1 23 138-160 6-28 (179)
282 PF00006 ATP-synt_ab: ATP synt 95.7 0.02 4.3E-07 50.5 5.6 38 138-179 16-53 (215)
283 cd03226 ABC_cobalt_CbiO_domain 95.7 0.059 1.3E-06 46.9 8.6 23 138-160 27-49 (205)
284 PRK13531 regulatory ATPase Rav 95.7 0.035 7.5E-07 54.6 7.6 127 140-271 42-193 (498)
285 cd03258 ABC_MetN_methionine_tr 95.7 0.052 1.1E-06 48.2 8.3 23 138-160 32-54 (233)
286 PRK11247 ssuB aliphatic sulfon 95.7 0.1 2.3E-06 47.3 10.4 23 138-160 39-61 (257)
287 COG0464 SpoVK ATPases of the A 95.7 0.068 1.5E-06 53.2 10.0 128 136-273 275-424 (494)
288 cd03217 ABC_FeS_Assembly ABC-t 95.7 0.067 1.5E-06 46.4 8.8 106 137-244 26-168 (200)
289 PRK10771 thiQ thiamine transpo 95.7 0.065 1.4E-06 47.6 8.9 22 138-159 26-47 (232)
290 TIGR01817 nifA Nif-specific re 95.7 0.48 1E-05 47.7 16.0 116 117-240 196-341 (534)
291 PRK13648 cbiO cobalt transport 95.7 0.06 1.3E-06 49.0 8.8 23 137-159 35-57 (269)
292 PRK09544 znuC high-affinity zi 95.7 0.056 1.2E-06 48.8 8.5 24 137-160 30-53 (251)
293 cd03233 ABC_PDR_domain1 The pl 95.7 0.066 1.4E-06 46.6 8.6 23 138-160 34-56 (202)
294 TIGR00602 rad24 checkpoint pro 95.7 0.044 9.5E-07 55.9 8.5 39 122-160 92-133 (637)
295 COG2812 DnaX DNA polymerase II 95.7 0.027 5.8E-07 55.8 6.7 151 118-272 17-191 (515)
296 cd03213 ABCG_EPDR ABCG transpo 95.7 0.094 2E-06 45.3 9.5 24 137-160 35-58 (194)
297 PRK13537 nodulation ABC transp 95.7 0.073 1.6E-06 49.6 9.3 22 138-159 34-55 (306)
298 PRK13541 cytochrome c biogenes 95.7 0.08 1.7E-06 45.7 9.0 23 138-160 27-49 (195)
299 PRK13647 cbiO cobalt transport 95.7 0.064 1.4E-06 49.1 8.8 22 138-159 32-53 (274)
300 PRK13640 cbiO cobalt transport 95.6 0.06 1.3E-06 49.5 8.6 23 138-160 34-56 (282)
301 PRK09270 nucleoside triphospha 95.6 0.017 3.6E-07 51.4 4.8 26 134-159 30-55 (229)
302 cd02023 UMPK Uridine monophosp 95.6 0.007 1.5E-07 52.4 2.3 22 139-160 1-22 (198)
303 PRK09493 glnQ glutamine ABC tr 95.6 0.064 1.4E-06 47.9 8.6 23 138-160 28-50 (240)
304 smart00534 MUTSac ATPase domai 95.6 0.083 1.8E-06 45.3 8.9 106 139-247 1-129 (185)
305 cd03237 ABC_RNaseL_inhibitor_d 95.6 0.096 2.1E-06 47.2 9.7 23 138-160 26-48 (246)
306 TIGR02012 tigrfam_recA protein 95.6 0.02 4.3E-07 53.6 5.3 72 136-209 54-143 (321)
307 PHA02244 ATPase-like protein 95.6 0.06 1.3E-06 51.2 8.5 105 122-239 108-230 (383)
308 cd03280 ABC_MutS2 MutS2 homolo 95.6 0.091 2E-06 45.6 9.2 105 136-246 27-157 (200)
309 smart00763 AAA_PrkA PrkA AAA d 95.6 0.013 2.8E-07 55.4 4.1 44 118-161 52-102 (361)
310 PRK10908 cell division protein 95.6 0.069 1.5E-06 47.1 8.6 24 137-160 28-51 (222)
311 PRK11153 metN DL-methionine tr 95.6 0.058 1.3E-06 51.1 8.5 22 138-159 32-53 (343)
312 PF08433 KTI12: Chromatin asso 95.6 0.011 2.3E-07 54.1 3.4 102 138-244 2-113 (270)
313 PRK11174 cysteine/glutathione 95.6 0.064 1.4E-06 54.5 9.4 23 137-159 376-398 (588)
314 cd00983 recA RecA is a bacter 95.5 0.02 4.3E-07 53.6 5.0 72 136-209 54-143 (325)
315 PRK04040 adenylate kinase; Pro 95.5 0.011 2.5E-07 50.9 3.1 23 138-160 3-25 (188)
316 PRK04301 radA DNA repair and r 95.5 0.065 1.4E-06 50.1 8.4 46 136-181 101-150 (317)
317 cd01135 V_A-ATPase_B V/A-type 95.5 0.04 8.7E-07 50.3 6.7 44 138-181 70-115 (276)
318 cd03289 ABCC_CFTR2 The CFTR su 95.5 0.093 2E-06 48.1 9.3 23 138-160 31-53 (275)
319 PF05621 TniB: Bacterial TniB 95.5 0.14 3E-06 47.2 10.3 88 123-210 46-156 (302)
320 PRK05917 DNA polymerase III su 95.5 0.5 1.1E-05 43.6 13.9 140 125-268 8-168 (290)
321 PRK15177 Vi polysaccharide exp 95.5 0.098 2.1E-06 45.9 9.1 23 138-160 14-36 (213)
322 PRK11176 lipid transporter ATP 95.5 0.054 1.2E-06 55.0 8.4 22 138-159 370-391 (582)
323 TIGR03410 urea_trans_UrtE urea 95.5 0.074 1.6E-06 47.1 8.4 23 137-159 26-48 (230)
324 cd03298 ABC_ThiQ_thiamine_tran 95.5 0.078 1.7E-06 46.3 8.4 23 138-160 25-47 (211)
325 PRK00131 aroK shikimate kinase 95.5 0.011 2.5E-07 49.5 2.9 24 137-160 4-27 (175)
326 TIGR01192 chvA glucan exporter 95.5 0.073 1.6E-06 54.2 9.2 24 136-159 360-383 (585)
327 KOG0924 mRNA splicing factor A 95.4 0.096 2.1E-06 52.9 9.5 25 136-160 370-395 (1042)
328 PF07724 AAA_2: AAA domain (Cd 95.4 0.016 3.6E-07 49.2 3.8 87 137-224 3-104 (171)
329 PF03205 MobB: Molybdopterin g 95.4 0.013 2.7E-07 48.2 3.0 23 138-160 1-23 (140)
330 PRK13635 cbiO cobalt transport 95.4 0.084 1.8E-06 48.4 8.8 23 138-160 34-56 (279)
331 cd02025 PanK Pantothenate kina 95.4 0.0087 1.9E-07 53.0 2.2 22 139-160 1-22 (220)
332 PRK14721 flhF flagellar biosyn 95.4 0.14 3.1E-06 49.7 10.6 23 137-159 191-213 (420)
333 KOG0733 Nuclear AAA ATPase (VC 95.4 0.022 4.7E-07 56.8 5.0 126 137-272 545-692 (802)
334 PRK13233 nifH nitrogenase redu 95.4 0.017 3.8E-07 52.7 4.2 22 138-159 3-24 (275)
335 TIGR01420 pilT_fam pilus retra 95.4 0.087 1.9E-06 49.9 9.1 99 137-244 122-234 (343)
336 PRK12726 flagellar biosynthesi 95.4 0.81 1.8E-05 43.9 15.3 25 136-160 205-229 (407)
337 COG1126 GlnQ ABC-type polar am 95.4 0.13 2.9E-06 45.1 9.2 23 137-159 28-50 (240)
338 cd02024 NRK1 Nicotinamide ribo 95.4 0.0097 2.1E-07 51.3 2.2 22 139-160 1-22 (187)
339 COG0468 RecA RecA/RadA recombi 95.4 0.053 1.1E-06 49.7 7.1 74 135-210 58-152 (279)
340 TIGR02322 phosphon_PhnN phosph 95.4 0.012 2.6E-07 50.0 2.8 23 138-160 2-24 (179)
341 TIGR01193 bacteriocin_ABC ABC- 95.4 0.058 1.3E-06 56.1 8.4 22 138-159 501-522 (708)
342 COG0466 Lon ATP-dependent Lon 95.4 0.019 4.1E-07 58.2 4.5 146 122-275 331-511 (782)
343 PRK11614 livF leucine/isoleuci 95.3 0.09 1.9E-06 46.8 8.5 22 138-159 32-53 (237)
344 PRK14738 gmk guanylate kinase; 95.3 0.014 3.1E-07 51.1 3.2 32 129-160 5-36 (206)
345 PRK11160 cysteine/glutathione 95.3 0.087 1.9E-06 53.5 9.3 23 137-159 366-388 (574)
346 PRK00625 shikimate kinase; Pro 95.3 0.012 2.6E-07 50.2 2.6 21 140-160 3-23 (173)
347 PRK00889 adenylylsulfate kinas 95.3 0.016 3.4E-07 49.1 3.4 25 136-160 3-27 (175)
348 TIGR03873 F420-0_ABC_ATP propo 95.3 0.092 2E-06 47.4 8.5 24 137-160 27-50 (256)
349 TIGR01846 type_I_sec_HlyB type 95.3 0.086 1.9E-06 54.7 9.3 24 137-160 483-506 (694)
350 PF02463 SMC_N: RecF/RecN/SMC 95.3 0.14 2.9E-06 45.0 9.4 48 199-247 158-206 (220)
351 cd03282 ABC_MSH4_euk MutS4 hom 95.3 0.17 3.7E-06 44.3 9.8 106 137-248 29-159 (204)
352 TIGR02236 recomb_radA DNA repa 95.3 0.084 1.8E-06 49.2 8.3 46 136-181 94-143 (310)
353 PRK13652 cbiO cobalt transport 95.3 0.093 2E-06 48.0 8.5 23 138-160 31-53 (277)
354 PRK13642 cbiO cobalt transport 95.3 0.098 2.1E-06 47.9 8.6 22 138-159 34-55 (277)
355 TIGR00554 panK_bact pantothena 95.3 0.025 5.5E-07 52.2 4.7 24 135-158 60-83 (290)
356 PRK08972 fliI flagellum-specif 95.3 0.049 1.1E-06 52.9 6.8 22 138-159 163-184 (444)
357 cd02028 UMPK_like Uridine mono 95.3 0.012 2.6E-07 50.4 2.4 22 139-160 1-22 (179)
358 TIGR03796 NHPM_micro_ABC1 NHPM 95.2 0.076 1.7E-06 55.2 8.8 23 137-159 505-527 (710)
359 TIGR02238 recomb_DMC1 meiotic 95.2 0.088 1.9E-06 49.2 8.3 46 136-181 95-144 (313)
360 PRK10751 molybdopterin-guanine 95.2 0.016 3.6E-07 49.2 3.1 25 136-160 5-29 (173)
361 TIGR01359 UMP_CMP_kin_fam UMP- 95.2 0.012 2.5E-07 50.2 2.3 22 139-160 1-22 (183)
362 PRK13536 nodulation factor exp 95.2 0.12 2.6E-06 48.9 9.2 23 137-159 67-89 (340)
363 PRK09354 recA recombinase A; P 95.2 0.036 7.8E-07 52.4 5.7 72 136-209 59-148 (349)
364 cd03287 ABC_MSH3_euk MutS3 hom 95.2 0.23 4.9E-06 44.1 10.4 106 136-246 30-160 (222)
365 PRK13546 teichoic acids export 95.2 0.091 2E-06 47.9 8.2 23 138-160 51-73 (264)
366 cd03250 ABCC_MRP_domain1 Domai 95.2 0.29 6.2E-06 42.5 11.1 24 137-160 31-54 (204)
367 TIGR03263 guanyl_kin guanylate 95.2 0.014 3.1E-07 49.5 2.7 23 138-160 2-24 (180)
368 PF01583 APS_kinase: Adenylyls 95.2 0.018 3.9E-07 48.1 3.2 23 138-160 3-25 (156)
369 PRK10867 signal recognition pa 95.2 0.061 1.3E-06 52.4 7.3 23 136-158 99-121 (433)
370 cd03227 ABC_Class2 ABC-type Cl 95.2 0.13 2.8E-06 43.1 8.4 108 138-246 22-147 (162)
371 PRK03846 adenylylsulfate kinas 95.2 0.019 4.1E-07 49.9 3.4 27 134-160 21-47 (198)
372 PRK13644 cbiO cobalt transport 95.1 0.13 2.9E-06 47.0 9.1 23 138-160 29-51 (274)
373 TIGR01288 nodI ATP-binding ABC 95.1 0.13 2.7E-06 47.9 9.0 22 138-159 31-52 (303)
374 TIGR02203 MsbA_lipidA lipid A 95.1 0.074 1.6E-06 53.8 8.1 23 137-159 358-380 (571)
375 COG0194 Gmk Guanylate kinase [ 95.1 0.088 1.9E-06 45.0 7.2 24 138-161 5-28 (191)
376 PF08477 Miro: Miro-like prote 95.1 0.017 3.7E-07 45.2 2.8 23 140-162 2-24 (119)
377 COG1428 Deoxynucleoside kinase 95.1 0.016 3.5E-07 50.4 2.8 26 137-162 4-29 (216)
378 PRK11308 dppF dipeptide transp 95.1 0.1 2.2E-06 49.1 8.4 23 138-160 42-64 (327)
379 PRK13633 cobalt transporter AT 95.1 0.11 2.4E-06 47.6 8.5 22 138-159 37-58 (280)
380 cd02020 CMPK Cytidine monophos 95.1 0.014 3E-07 47.5 2.3 22 139-160 1-22 (147)
381 cd03248 ABCC_TAP TAP, the Tran 95.1 0.18 4E-06 44.4 9.6 24 137-160 40-63 (226)
382 TIGR00958 3a01208 Conjugate Tr 95.1 0.1 2.3E-06 54.3 9.2 23 137-159 507-529 (711)
383 cd02021 GntK Gluconate kinase 95.1 0.015 3.2E-07 47.9 2.3 22 139-160 1-22 (150)
384 PRK05973 replicative DNA helic 95.1 0.1 2.2E-06 46.8 7.8 23 137-159 64-86 (237)
385 cd00227 CPT Chloramphenicol (C 95.1 0.017 3.6E-07 49.1 2.7 23 138-160 3-25 (175)
386 PRK11650 ugpC glycerol-3-phosp 95.1 0.13 2.7E-06 49.1 8.9 22 138-159 31-52 (356)
387 TIGR01425 SRP54_euk signal rec 95.0 0.27 5.8E-06 47.9 11.2 24 136-159 99-122 (429)
388 cd00561 CobA_CobO_BtuR ATP:cor 95.0 0.13 2.8E-06 43.1 7.9 48 193-241 88-139 (159)
389 cd01130 VirB11-like_ATPase Typ 95.0 0.21 4.6E-06 42.8 9.6 23 137-159 25-47 (186)
390 PRK11432 fbpC ferric transport 95.0 0.11 2.5E-06 49.3 8.5 22 138-159 33-54 (351)
391 PRK12597 F0F1 ATP synthase sub 95.0 0.04 8.6E-07 54.1 5.4 41 138-179 144-184 (461)
392 PRK10789 putative multidrug tr 95.0 0.11 2.3E-06 52.7 8.8 23 137-159 341-363 (569)
393 PRK00300 gmk guanylate kinase; 95.0 0.018 3.8E-07 50.1 2.7 24 137-160 5-28 (205)
394 PRK13947 shikimate kinase; Pro 95.0 0.017 3.8E-07 48.5 2.6 22 139-160 3-24 (171)
395 TIGR00991 3a0901s02IAP34 GTP-b 95.0 0.26 5.7E-06 45.8 10.4 39 123-161 21-62 (313)
396 PRK08927 fliI flagellum-specif 94.9 0.074 1.6E-06 51.8 7.1 24 137-160 158-181 (442)
397 KOG0744 AAA+-type ATPase [Post 94.9 0.054 1.2E-06 50.2 5.7 73 138-210 178-261 (423)
398 PRK10463 hydrogenase nickel in 94.9 0.11 2.4E-06 47.8 7.8 27 134-160 101-127 (290)
399 cd04162 Arl9_Arfrp2_like Arl9/ 94.9 0.089 1.9E-06 43.9 6.8 21 140-160 2-22 (164)
400 PLN03186 DNA repair protein RA 94.9 0.11 2.5E-06 49.0 8.1 47 136-182 122-172 (342)
401 PRK14722 flhF flagellar biosyn 94.9 0.17 3.6E-06 48.5 9.2 24 137-160 137-160 (374)
402 PLN02318 phosphoribulokinase/u 94.9 0.033 7.1E-07 56.0 4.5 39 122-160 50-88 (656)
403 KOG0927 Predicted transporter 94.9 0.15 3.3E-06 50.3 8.9 57 189-247 229-286 (614)
404 cd01129 PulE-GspE PulE/GspE Th 94.9 0.23 5E-06 45.3 9.8 101 136-244 79-188 (264)
405 TIGR01069 mutS2 MutS2 family p 94.9 0.054 1.2E-06 56.7 6.4 105 135-245 320-450 (771)
406 TIGR03797 NHPM_micro_ABC2 NHPM 94.9 0.15 3.2E-06 52.9 9.5 23 137-159 479-501 (686)
407 PRK06936 type III secretion sy 94.8 0.074 1.6E-06 51.8 6.8 38 137-178 162-199 (439)
408 cd00464 SK Shikimate kinase (S 94.8 0.021 4.5E-07 47.0 2.6 21 140-160 2-22 (154)
409 KOG2228 Origin recognition com 94.8 0.43 9.2E-06 44.7 11.2 154 115-273 22-220 (408)
410 cd03284 ABC_MutS1 MutS1 homolo 94.8 0.11 2.4E-06 45.8 7.4 21 138-158 31-51 (216)
411 PRK13949 shikimate kinase; Pro 94.8 0.02 4.4E-07 48.5 2.6 22 139-160 3-24 (169)
412 PRK11000 maltose/maltodextrin 94.8 0.13 2.8E-06 49.3 8.3 22 138-159 30-51 (369)
413 cd01125 repA Hexameric Replica 94.8 0.15 3.2E-06 45.6 8.3 21 139-159 3-23 (239)
414 PRK13975 thymidylate kinase; P 94.8 0.023 5E-07 48.9 2.9 24 138-161 3-26 (196)
415 PRK12723 flagellar biosynthesi 94.8 0.32 7E-06 46.8 11.0 25 136-160 173-197 (388)
416 TIGR02239 recomb_RAD51 DNA rep 94.8 0.12 2.7E-06 48.3 8.0 47 135-181 94-144 (316)
417 PRK13636 cbiO cobalt transport 94.8 0.14 3.1E-06 47.0 8.4 22 138-159 33-54 (283)
418 PRK10790 putative multidrug tr 94.8 0.13 2.7E-06 52.5 8.7 23 137-159 367-389 (592)
419 PRK10078 ribose 1,5-bisphospho 94.8 0.022 4.8E-07 48.9 2.8 23 138-160 3-25 (186)
420 PTZ00035 Rad51 protein; Provis 94.8 0.2 4.3E-06 47.3 9.4 45 136-180 117-165 (337)
421 PRK05703 flhF flagellar biosyn 94.8 0.18 3.9E-06 49.2 9.2 22 138-159 222-243 (424)
422 KOG3347 Predicted nucleotide k 94.7 0.042 9.1E-07 45.3 4.0 24 137-160 7-30 (176)
423 PRK14530 adenylate kinase; Pro 94.7 0.022 4.8E-07 50.1 2.7 22 139-160 5-26 (215)
424 PRK08149 ATP synthase SpaL; Va 94.7 0.085 1.8E-06 51.3 6.8 24 137-160 151-174 (428)
425 PF12061 DUF3542: Protein of u 94.7 0.11 2.3E-06 47.9 6.9 89 9-97 298-401 (402)
426 PRK11608 pspF phage shock prot 94.7 0.23 5E-06 46.7 9.6 115 118-240 7-151 (326)
427 TIGR00150 HI0065_YjeE ATPase, 94.7 0.046 9.9E-07 44.4 4.1 38 124-161 9-46 (133)
428 PF10443 RNA12: RNA12 protein; 94.7 0.14 3.1E-06 49.4 8.1 72 199-274 148-231 (431)
429 PLN03187 meiotic recombination 94.7 0.078 1.7E-06 50.2 6.3 47 136-182 125-175 (344)
430 COG1123 ATPase components of v 94.6 0.2 4.3E-06 49.9 9.3 22 138-159 318-339 (539)
431 TIGR02974 phageshock_pspF psp 94.6 0.26 5.7E-06 46.4 9.8 93 139-239 24-143 (329)
432 TIGR01313 therm_gnt_kin carboh 94.6 0.02 4.3E-07 47.9 2.0 21 140-160 1-21 (163)
433 TIGR00073 hypB hydrogenase acc 94.6 0.029 6.3E-07 49.0 3.2 27 134-160 19-45 (207)
434 PRK09452 potA putrescine/sperm 94.6 0.17 3.8E-06 48.5 8.7 22 138-159 41-62 (375)
435 PF12780 AAA_8: P-loop contain 94.6 0.13 2.8E-06 47.0 7.5 135 124-273 21-159 (268)
436 cd01868 Rab11_like Rab11-like. 94.6 0.15 3.2E-06 42.2 7.3 23 139-161 5-27 (165)
437 PRK05439 pantothenate kinase; 94.6 0.05 1.1E-06 50.7 4.8 26 134-159 83-108 (311)
438 PF00154 RecA: recA bacterial 94.6 0.058 1.2E-06 50.4 5.2 72 137-210 53-142 (322)
439 TIGR02204 MsbA_rel ABC transpo 94.6 0.12 2.7E-06 52.2 8.1 23 137-159 366-388 (576)
440 TIGR00959 ffh signal recogniti 94.6 0.11 2.4E-06 50.7 7.3 24 136-159 98-121 (428)
441 COG1703 ArgK Putative periplas 94.6 0.053 1.1E-06 49.7 4.7 37 124-160 38-74 (323)
442 cd04110 Rab35 Rab35 subfamily. 94.6 0.11 2.3E-06 45.0 6.6 24 137-160 6-29 (199)
443 KOG0731 AAA+-type ATPase conta 94.6 0.35 7.6E-06 50.0 11.0 143 122-273 322-496 (774)
444 PRK09280 F0F1 ATP synthase sub 94.5 0.071 1.5E-06 52.2 5.9 72 138-210 145-249 (463)
445 cd00071 GMPK Guanosine monopho 94.5 0.024 5.3E-07 46.2 2.3 22 139-160 1-22 (137)
446 COG1222 RPT1 ATP-dependent 26S 94.5 0.048 1E-06 51.2 4.4 128 136-272 184-335 (406)
447 PRK05022 anaerobic nitric oxid 94.5 0.3 6.5E-06 48.8 10.5 117 116-240 186-332 (509)
448 PRK07276 DNA polymerase III su 94.5 1.1 2.5E-05 41.3 13.4 72 196-271 101-174 (290)
449 PRK06995 flhF flagellar biosyn 94.5 0.28 6.1E-06 48.5 10.0 24 137-160 256-279 (484)
450 TIGR01842 type_I_sec_PrtD type 94.5 0.21 4.5E-06 50.3 9.4 24 137-160 344-367 (544)
451 PRK11607 potG putrescine trans 94.5 0.25 5.4E-06 47.5 9.4 22 138-159 46-67 (377)
452 COG3899 Predicted ATPase [Gene 94.5 0.26 5.6E-06 52.3 10.4 38 122-159 8-46 (849)
453 cd03288 ABCC_SUR2 The SUR doma 94.5 0.33 7.1E-06 43.9 9.8 23 138-160 48-70 (257)
454 KOG0736 Peroxisome assembly fa 94.5 0.061 1.3E-06 55.1 5.3 66 138-210 706-775 (953)
455 PF00005 ABC_tran: ABC transpo 94.5 0.032 7E-07 44.9 2.9 23 138-160 12-34 (137)
456 PRK06002 fliI flagellum-specif 94.5 0.086 1.9E-06 51.5 6.3 23 138-160 166-188 (450)
457 COG1131 CcmA ABC-type multidru 94.5 0.26 5.7E-06 45.6 9.3 22 138-159 32-53 (293)
458 cd01852 AIG1 AIG1 (avrRpt2-ind 94.5 0.19 4.1E-06 43.3 7.9 23 139-161 2-24 (196)
459 TIGR01186 proV glycine betaine 94.5 0.2 4.4E-06 47.8 8.7 22 138-159 20-41 (363)
460 COG1084 Predicted GTPase [Gene 94.5 2.5 5.4E-05 39.5 15.3 33 134-166 165-198 (346)
461 COG0563 Adk Adenylate kinase a 94.5 0.028 6E-07 48.1 2.5 22 139-160 2-23 (178)
462 PRK07594 type III secretion sy 94.4 0.11 2.4E-06 50.6 6.9 24 137-160 155-178 (433)
463 cd02027 APSK Adenosine 5'-phos 94.4 0.026 5.6E-07 46.7 2.3 22 139-160 1-22 (149)
464 cd01121 Sms Sms (bacterial rad 94.4 0.08 1.7E-06 50.7 5.9 69 137-210 82-169 (372)
465 cd04139 RalA_RalB RalA/RalB su 94.4 0.035 7.6E-07 45.7 3.1 23 139-161 2-24 (164)
466 TIGR03496 FliI_clade1 flagella 94.4 0.12 2.6E-06 50.2 7.0 23 138-160 138-160 (411)
467 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.077 1.7E-06 51.8 5.8 43 138-181 139-181 (449)
468 PRK14723 flhF flagellar biosyn 94.4 0.24 5.2E-06 51.5 9.5 23 137-159 185-207 (767)
469 PRK04182 cytidylate kinase; Pr 94.4 0.032 7E-07 47.1 2.8 22 139-160 2-23 (180)
470 PRK13545 tagH teichoic acids e 94.4 0.19 4E-06 50.2 8.4 23 138-160 51-73 (549)
471 PRK05057 aroK shikimate kinase 94.4 0.032 7E-07 47.3 2.8 23 138-160 5-27 (172)
472 smart00072 GuKc Guanylate kina 94.4 0.16 3.4E-06 43.5 7.1 23 138-160 3-25 (184)
473 PRK14246 phosphate ABC transpo 94.4 0.33 7.1E-06 43.9 9.5 23 138-160 37-59 (257)
474 cd01136 ATPase_flagellum-secre 94.3 0.15 3.2E-06 47.9 7.3 23 138-160 70-92 (326)
475 TIGR00176 mobB molybdopterin-g 94.3 0.028 6E-07 47.0 2.3 22 139-160 1-22 (155)
476 COG1100 GTPase SAR1 and relate 94.3 0.036 7.7E-07 48.4 3.1 24 138-161 6-29 (219)
477 COG1122 CbiO ABC-type cobalt t 94.3 0.14 2.9E-06 45.9 6.8 22 138-159 31-52 (235)
478 PF00448 SRP54: SRP54-type pro 94.3 0.041 8.8E-07 47.9 3.2 37 137-175 1-37 (196)
479 PRK12339 2-phosphoglycerate ki 94.3 0.039 8.4E-07 48.0 3.1 24 137-160 3-26 (197)
480 TIGR02782 TrbB_P P-type conjug 94.3 0.17 3.7E-06 47.0 7.5 75 138-218 133-221 (299)
481 PRK10820 DNA-binding transcrip 94.2 0.37 8E-06 48.3 10.4 114 118-240 205-349 (520)
482 PRK12724 flagellar biosynthesi 94.2 0.27 5.9E-06 47.6 9.0 23 137-159 223-245 (432)
483 PF00625 Guanylate_kin: Guanyl 94.2 0.05 1.1E-06 46.5 3.6 34 137-172 2-35 (183)
484 PRK10070 glycine betaine trans 94.2 0.29 6.3E-06 47.4 9.2 22 138-159 55-76 (400)
485 PRK13946 shikimate kinase; Pro 94.2 0.034 7.3E-07 47.7 2.6 23 138-160 11-33 (184)
486 TIGR03265 PhnT2 putative 2-ami 94.2 0.23 4.9E-06 47.3 8.4 23 138-160 31-53 (353)
487 PRK13894 conjugal transfer ATP 94.2 0.21 4.6E-06 46.8 8.0 83 137-227 148-244 (319)
488 cd03299 ABC_ModC_like Archeal 94.2 0.24 5.3E-06 44.0 8.2 24 137-160 25-48 (235)
489 PTZ00185 ATPase alpha subunit; 94.2 0.13 2.8E-06 51.0 6.7 44 138-181 190-239 (574)
490 TIGR03258 PhnT 2-aminoethylpho 94.2 0.24 5.1E-06 47.3 8.5 22 138-159 32-53 (362)
491 TIGR02788 VirB11 P-type DNA tr 94.2 0.36 7.9E-06 45.0 9.6 101 137-244 144-257 (308)
492 cd01672 TMPK Thymidine monopho 94.2 0.038 8.2E-07 47.3 2.8 22 139-160 2-23 (200)
493 PF13521 AAA_28: AAA domain; P 94.1 0.037 8E-07 46.3 2.6 21 140-160 2-22 (163)
494 PF03308 ArgK: ArgK protein; 94.1 0.066 1.4E-06 48.3 4.3 38 123-160 15-52 (266)
495 PRK15439 autoinducer 2 ABC tra 94.1 0.23 5E-06 49.6 8.8 22 138-159 38-59 (510)
496 cd00820 PEPCK_HprK Phosphoenol 94.1 0.043 9.4E-07 42.8 2.8 22 137-158 15-36 (107)
497 cd04118 Rab24 Rab24 subfamily. 94.1 0.18 3.8E-06 43.1 6.9 22 140-161 3-24 (193)
498 COG1936 Predicted nucleotide k 94.1 0.037 7.9E-07 46.7 2.5 20 139-158 2-21 (180)
499 PRK15429 formate hydrogenlyase 94.1 0.21 4.6E-06 51.8 8.7 116 118-240 377-521 (686)
500 PRK09825 idnK D-gluconate kina 94.1 0.039 8.4E-07 47.1 2.7 23 138-160 4-26 (176)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.9e-41 Score=346.95 Aligned_cols=287 Identities=17% Similarity=0.235 Sum_probs=227.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCcch----HHHHHHHhHhhhhhhhhhhh-h-------------------hccchhh
Q 020066 27 RGMKNLRVSLRKLHNLLRNVREDAIPNY----LLTDLNGIASDVDGLIDAPM-E-------------------VSNYKEV 82 (331)
Q Consensus 27 ~~l~~L~~~L~~i~~~l~~ae~~~~~~~----Wl~~lr~~~yd~eD~ld~~~-~-------------------~~~~~~~ 82 (331)
..+..|+++|..++.+++++++++.... |.+.+++++|++||.++.|. + -|+..+.
T Consensus 28 ~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~ 107 (889)
T KOG4658|consen 28 NYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFC 107 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhH
Confidence 7899999999999999999999987655 99999999999999999987 0 0222333
Q ss_pred H-------HHHHHHHHHHHHHHHHHhccCC--CCC-C-----CC--CCCCCCCCCC---cHHHHHHHHhcCCCCcEEEEE
Q 020066 83 M-------RIRERLVRSMDSLKKIVAGQDV--ESG-D-----LS--HRSAETELEG---SVDSVKNALLRDGSTVRFIHI 142 (331)
Q Consensus 83 ~-------~~~~~i~~i~~~l~~i~~~~~~--~~~-~-----~~--~~~~~~~~vG---~~~~l~~~L~~~~~~~~vi~I 142 (331)
+ .+.+++-++.+.++.+..+... ... . .. +..+++. || .++.+.+.|.++ +..+++|
T Consensus 108 ~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d--~~~iv~i 184 (889)
T KOG4658|consen 108 SKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMED--DVGIVGI 184 (889)
T ss_pred hHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccC--CCCEEEE
Confidence 3 4455555555555555544322 111 0 11 1122333 88 899999999954 3499999
Q ss_pred EecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCcc-------------------ccHHHHHHHHHhccCCceeE
Q 020066 143 VGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLS-------------------TVMNVITIRCKEIPSSEMLL 202 (331)
Q Consensus 143 ~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~-------------------~~~~~l~~~l~~~l~~kr~L 202 (331)
+||||+||||||+.++|+.. ++.+|+.++||+||+.|+.. ...+.++..+.+.|++||||
T Consensus 185 ~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfl 264 (889)
T KOG4658|consen 185 YGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFL 264 (889)
T ss_pred ECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceE
Confidence 99999999999999999988 99999999999999998876 22368888999999999999
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh-ccCCccccccccCCChHHHHHHHhhhCCCCC-CCcc
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM-MKQTVPEAEHLIYFSESNSWSNLNCELPPSS-QEAH 280 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~-~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~-~~~~ 280 (331)
|||||||+. .+|+.|..++|... +||+|++|||++.||.. ++....+ ++++|+.+|||.||++.||+.. .+.+
T Consensus 265 lvLDDIW~~--~dw~~I~~~~p~~~-~g~KvvlTTRs~~V~~~~m~~~~~~--~v~~L~~~eaW~LF~~~v~~~~~~~~~ 339 (889)
T KOG4658|consen 265 LVLDDIWEE--VDWDKIGVPFPSRE-NGSKVVLTTRSEEVCGRAMGVDYPI--EVECLTPEEAWDLFQKKVGPNTLGSHP 339 (889)
T ss_pred EEEeccccc--ccHHhcCCCCCCcc-CCeEEEEEeccHhhhhccccCCccc--cccccCccccHHHHHHhhccccccccc
Confidence 999999995 56999999999998 99999999999999998 7877788 9999999999999999999763 2223
Q ss_pred cccccCcccccChHHHHhHhhhhhhhhHHhhccccccCCChhhhhcccc
Q 020066 281 RVEALEPESAMDEEDVASFKQFLLDVDLVATGESLETVPTSDRMERRLP 329 (331)
Q Consensus 281 ~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~~~~~~~~~~~~~ 329 (331)
.+..++ .+++. +|.+||+|+.++|+.|++++|.+.|+++..
T Consensus 340 ~i~~la------k~v~~--kC~GLPLAl~viG~~ma~K~t~~eW~~~~~ 380 (889)
T KOG4658|consen 340 DIEELA------KEVAE--KCGGLPLALNVLGGLLACKKTVQEWRRALN 380 (889)
T ss_pred cHHHHH------HHHHH--HhCChHHHHHHHHHHhcCCCcHHHHHHHHc
Confidence 333332 22343 445678889999999999999999998764
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=6.6e-30 Score=235.15 Aligned_cols=194 Identities=26% Similarity=0.340 Sum_probs=143.3
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-------------------
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS------------------- 182 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~------------------- 182 (331)
++++|.+.|....++.++|+|+||||+||||||..+|++..++.+|+.++|+.+++..+..
T Consensus 4 ~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 83 (287)
T PF00931_consen 4 EIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISD 83 (287)
T ss_dssp HHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSC
T ss_pred HHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4678999999655889999999999999999999999987789999999999998876644
Q ss_pred -ccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhccC-CccccccccCCC
Q 020066 183 -TVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMKQ-TVPEAEHLIYFS 260 (331)
Q Consensus 183 -~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~~-~~~~~~~l~~L~ 260 (331)
.+.+.+...+.+.|.++++||||||||+ ...|+.+...++... .||+||||||+..++..++. ...| ++++|+
T Consensus 84 ~~~~~~~~~~l~~~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~-~~~kilvTTR~~~v~~~~~~~~~~~--~l~~L~ 158 (287)
T PF00931_consen 84 PKDIEELQDQLRELLKDKRCLLVLDDVWD--EEDLEELREPLPSFS-SGSKILVTTRDRSVAGSLGGTDKVI--ELEPLS 158 (287)
T ss_dssp CSSHHHHHHHHHHHHCCTSEEEEEEEE-S--HHHH-------HCHH-SS-EEEEEESCGGGGTTHHSCEEEE--ECSS--
T ss_pred ccccccccccchhhhccccceeeeeeecc--ccccccccccccccc-ccccccccccccccccccccccccc--cccccc
Confidence 2467788899999999999999999998 467999988888777 89999999999999887765 5678 999999
Q ss_pred hHHHHHHHhhhCCCCC-CCcccccccCcccccChHHHHhHhhhhhhhhHHhhccccccCCChhhhhccc
Q 020066 261 ESNSWSNLNCELPPSS-QEAHRVEALEPESAMDEEDVASFKQFLLDVDLVATGESLETVPTSDRMERRL 328 (331)
Q Consensus 261 ~~~s~~Lf~~~af~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~~~~~~~~~~~~ 328 (331)
.++|++||++.++... ...+.+.+ .+..++..|. ++|+++..+|+.|..+++.+.|++.+
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~------~~~~i~~~c~--glPLal~~~a~~l~~~~~~~~w~~~~ 219 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLED------LAKEIVEKCG--GLPLALKLIASYLRSKSTVDEWEEAL 219 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCT------HHHHHHHHTT--T-HHHHHHHHHHHHHHHSSSSHHHHH
T ss_pred ccccccccccccccccccccccccc------cccccccccc--cccccccccccccccccccccccccc
Confidence 9999999999998654 11111111 1223344444 56777777899997776777666654
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=5.8e-25 Score=236.23 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=145.8
Q ss_pred CCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe---CCCC---C---cc-
Q 020066 116 ETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV---GKIL---D---LS- 182 (331)
Q Consensus 116 ~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~---~---~~- 182 (331)
...++| .++++..+|....+++++|+||||||+||||||+.+|+ ++..+|+..+|+.. +... . ..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccc
Confidence 345778 77788877765567799999999999999999999999 57788998888642 1111 0 00
Q ss_pred cc-H--------HH----------HHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHH
Q 020066 183 TV-M--------NV----------ITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVA 243 (331)
Q Consensus 183 ~~-~--------~~----------l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va 243 (331)
.. . .. ....+++.+++||+||||||||+ ...|+.+........ +||+||||||+..++
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~-~GsrIIiTTrd~~vl 337 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFG-SGSRIIVITKDKHFL 337 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCC-CCcEEEEEeCcHHHH
Confidence 00 0 00 01345677889999999999998 466988887666556 899999999999999
Q ss_pred hhccCCccccccccCCChHHHHHHHhhhCCCCCCCcccccccCcccccChHHHHhHhhhhhhhhHHhhccccccCCChhh
Q 020066 244 TMMKQTVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEALEPESAMDEEDVASFKQFLLDVDLVATGESLETVPTSDR 323 (331)
Q Consensus 244 ~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~~~~~~~ 323 (331)
..++..++| +++.|++++||+||+++||+....+..+.++ ..+++.. +.++|+|++++|+.|.+++ .+.
T Consensus 338 ~~~~~~~~~--~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l------~~~iv~~--c~GLPLAl~vlgs~L~~k~-~~~ 406 (1153)
T PLN03210 338 RAHGIDHIY--EVCLPSNELALEMFCRSAFKKNSPPDGFMEL------ASEVALR--AGNLPLGLNVLGSYLRGRD-KED 406 (1153)
T ss_pred HhcCCCeEE--EecCCCHHHHHHHHHHHhcCCCCCcHHHHHH------HHHHHHH--hCCCcHHHHHHHHHHcCCC-HHH
Confidence 888777889 9999999999999999999764333333332 2223333 3457888899999999985 566
Q ss_pred hhccc
Q 020066 324 MERRL 328 (331)
Q Consensus 324 ~~~~~ 328 (331)
|+++|
T Consensus 407 W~~~l 411 (1153)
T PLN03210 407 WMDML 411 (1153)
T ss_pred HHHHH
Confidence 76654
No 4
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=9e-10 Score=92.28 Aligned_cols=131 Identities=23% Similarity=0.304 Sum_probs=81.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCCcc--------------ccHHHHHHHHHh-ccCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILDLS--------------TVMNVITIRCKE-IPSS 198 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~--------------~~~~~l~~~l~~-~l~~ 198 (331)
+++.|+|.+|+||||+++.++.+-..... +...+|++........ .........+.. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57889999999999999998875433222 3455566554333221 001111111111 2256
Q ss_pred ceeEEEEeCCCCCCH--H-----hHHHHHHhhcCC--CCCCcEEEEecCCchHH---hhccCCccccccccCCChHHHHH
Q 020066 199 EMLLIALDGLCDLND--D-----NLANLRLLVTNM--DLVGFYVLVTTQSRSVA---TMMKQTVPEAEHLIYFSESNSWS 266 (331)
Q Consensus 199 kr~LlVLDdvw~~~~--~-----~~~~l~~~l~~~--~~~gs~IIvTTR~~~va---~~~~~~~~~~~~l~~L~~~~s~~ 266 (331)
++++||||++++... . .+..+...+... . +++++|||||..... ........+ .+.++++++..+
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~liit~r~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~ 157 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALP-PGVKLIITSRPRAFPDLRRRLKQAQIL--ELEPFSEEDIKQ 157 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccC-CCCeEEEEEcCChHHHHHHhcCCCcEE--EECCCCHHHHHH
Confidence 799999999977432 1 133333333222 4 789999999988763 333444568 999999999999
Q ss_pred HHhhh
Q 020066 267 NLNCE 271 (331)
Q Consensus 267 Lf~~~ 271 (331)
++.++
T Consensus 158 ~~~~~ 162 (166)
T PF05729_consen 158 YLRKY 162 (166)
T ss_pred HHHHH
Confidence 98764
No 5
>PF13173 AAA_14: AAA domain
Probab=98.85 E-value=8.8e-09 Score=83.41 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=78.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNL 216 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~ 216 (331)
-+++.|.|..|+|||||++.++.+.. .....++++.............+...+.+....++.+|+||++... ..|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~ 76 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDW 76 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccH
Confidence 35788999999999999999887532 2244556655443332111111334444444457889999999875 457
Q ss_pred HHHHHhhcCCCCCCcEEEEecCCchHHhh------ccCCccccccccCCChHHH
Q 020066 217 ANLRLLVTNMDLVGFYVLVTTQSRSVATM------MKQTVPEAEHLIYFSESNS 264 (331)
Q Consensus 217 ~~l~~~l~~~~~~gs~IIvTTR~~~va~~------~~~~~~~~~~l~~L~~~~s 264 (331)
......+.+.. +..+||+|+.+...... .|....+ +|.||+..|.
T Consensus 77 ~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~--~l~Plsf~E~ 127 (128)
T PF13173_consen 77 EDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEI--ELYPLSFREF 127 (128)
T ss_pred HHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEE--EECCCCHHHh
Confidence 77766666555 67899999988776532 1223357 8999998774
No 6
>PRK06893 DNA replication initiation factor; Validated
Probab=98.84 E-value=1.5e-08 Score=90.39 Aligned_cols=127 Identities=14% Similarity=0.091 Sum_probs=78.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCC-HHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLN-DDN 215 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-~~~ 215 (331)
.+.+-++|..|+|||+|++.+++.... ......|+....... ....+.+.+. +.-+|+|||+|... ...
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~--~~~~~~y~~~~~~~~-------~~~~~~~~~~-~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLL--NQRTAIYIPLSKSQY-------FSPAVLENLE-QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEeeHHHhhh-------hhHHHHhhcc-cCCEEEEeChhhhcCChH
Confidence 456889999999999999999985321 223445665532110 1112222232 23589999999742 234
Q ss_pred HHH-HHHhhcCCCCCCcEEEE-ecCC---------chHHhhccCCccccccccCCChHHHHHHHhhhCCCC
Q 020066 216 LAN-LRLLVTNMDLVGFYVLV-TTQS---------RSVATMMKQTVPEAEHLIYFSESNSWSNLNCELPPS 275 (331)
Q Consensus 216 ~~~-l~~~l~~~~~~gs~IIv-TTR~---------~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 275 (331)
|+. +...+......|+.+|+ |+.. +++...+....++ +++++++++.++++++.++..
T Consensus 109 ~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~--~l~~pd~e~~~~iL~~~a~~~ 177 (229)
T PRK06893 109 WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIY--QLNDLTDEQKIIVLQRNAYQR 177 (229)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCee--eCCCCCHHHHHHHHHHHHHHc
Confidence 653 33333221103556654 4543 3566666666778 999999999999999988643
No 7
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.76 E-value=6.1e-08 Score=90.76 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=91.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHH-HhccCCceeEE
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRC-KEIPSSEMLLI 203 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l-~~~l~~kr~Ll 203 (331)
-|.+++. ...+.-.-.||.+|+||||||+.+... .... +..+|...+...+...+.+.- +....+++.+|
T Consensus 38 ~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~-----f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiL 108 (436)
T COG2256 38 PLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGT--TNAA-----FEALSAVTSGVKDLREIIEEARKNRLLGRRTIL 108 (436)
T ss_pred hHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHh--hCCc-----eEEeccccccHHHHHHHHHHHHHHHhcCCceEE
Confidence 3444444 566777779999999999999999873 3323 344444444444555555554 33455899999
Q ss_pred EEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE--ecCCchH---HhhccCCccccccccCCChHHHHHHHhh
Q 020066 204 ALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV--TTQSRSV---ATMMKQTVPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 204 VLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv--TTR~~~v---a~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
++|.|..-+..+-+.++..+- +|.-|+| ||-|+.- ....+...+| .+++|+.+|-.+++.+
T Consensus 109 flDEIHRfnK~QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~vf--~lk~L~~~di~~~l~r 174 (436)
T COG2256 109 FLDEIHRFNKAQQDALLPHVE----NGTIILIGATTENPSFELNPALLSRARVF--ELKPLSSEDIKKLLKR 174 (436)
T ss_pred EEehhhhcChhhhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhhee--eeecCCHHHHHHHHHH
Confidence 999999877667777776664 5666665 6666652 2334556789 9999999999999998
No 8
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.60 E-value=5.9e-07 Score=87.19 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=81.8
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhc-cCCceeEEE
Q 020066 126 VKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEI-PSSEMLLIA 204 (331)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlV 204 (331)
+.+++. ......+.++|.+|+||||||+.+++.. ... |+.++.......+...+....... ..+++.+|+
T Consensus 27 L~~~i~--~~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~ 97 (413)
T PRK13342 27 LRRMIE--AGRLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLREVIEEARQRRSAGRRTILF 97 (413)
T ss_pred HHHHHH--cCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHHHHHHHHHHhhhcCCceEEE
Confidence 555554 3445567789999999999999998842 222 333333222222233333333222 245789999
Q ss_pred EeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE--ecCCchHH---hhccCCccccccccCCChHHHHHHHhhhC
Q 020066 205 LDGLCDLNDDNLANLRLLVTNMDLVGFYVLV--TTQSRSVA---TMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 205 LDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv--TTR~~~va---~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
||+++.......+.|...+. .|+.+++ ||.+.... ........+ .+.+++.++.+.+|.+.+
T Consensus 98 IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~SR~~~~--~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 98 IDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALLSRAQVF--ELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred EechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhccceee--EeCCCCHHHHHHHHHHHH
Confidence 99999876666777776664 3444444 34443311 222334577 999999999999998854
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.56 E-value=1.8e-06 Score=78.52 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=81.8
Q ss_pred cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc----------------cc
Q 020066 122 SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----------------TV 184 (331)
Q Consensus 122 ~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----------------~~ 184 (331)
....+...+... ......+.|+|.+|+|||||++.+++..... .+ ..+|+..+ ..+.. .+
T Consensus 27 ~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~~~~-~~~~~~~l~~i~~~lG~~~~~~~ 103 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKLVNT-RVDAEDLLRMVAADFGLETEGRD 103 (269)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeeeeCC-CCCHHHHHHHHHHHcCCCCCCCC
Confidence 445555555322 3345678899999999999999999864321 11 12233222 11111 11
Q ss_pred HHHHHHHHH----h-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcC---CCCCCcEEEEecCCchHHhhcc---------
Q 020066 185 MNVITIRCK----E-IPSSEMLLIALDGLCDLNDDNLANLRLLVTN---MDLVGFYVLVTTQSRSVATMMK--------- 247 (331)
Q Consensus 185 ~~~l~~~l~----~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~---~~~~gs~IIvTTR~~~va~~~~--------- 247 (331)
...+...+. . ...+++++||+|+++......++.+...... +. ....|++|... .......
T Consensus 104 ~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~-~~~~vvl~g~~-~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 104 KAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNA-KLLQIFLVGQP-EFRETLQSPQLQQLRQ 181 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCC-CeEEEEEcCCH-HHHHHHcCchhHHHHh
Confidence 112222222 2 2367889999999998776667766532221 12 23345566543 2221111
Q ss_pred -CCccccccccCCChHHHHHHHhhhC
Q 020066 248 -QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 248 -~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
....+ .+.+++.+|...++...+
T Consensus 182 r~~~~~--~l~~l~~~e~~~~l~~~l 205 (269)
T TIGR03015 182 RIIASC--HLGPLDREETREYIEHRL 205 (269)
T ss_pred heeeee--eCCCCCHHHHHHHHHHHH
Confidence 02245 799999999999988765
No 10
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.52 E-value=2.4e-06 Score=86.80 Aligned_cols=151 Identities=9% Similarity=0.064 Sum_probs=86.6
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc---CceEEEEeCCC---CCcc-----
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF---PRHIWFSVGKI---LDLS----- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~----- 182 (331)
..++| ....+.+.+. ......+.|+|.+|+||||||+.+++.......+ ...-|+.+... .+..
T Consensus 154 ~~iiGqs~~~~~l~~~ia--~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~ 231 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVA--SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNP 231 (615)
T ss_pred HhceeCcHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHH
Confidence 34667 5555666654 3445568899999999999999998754333322 12335544321 0100
Q ss_pred ------c--------------------------------------cHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHHH
Q 020066 183 ------T--------------------------------------VMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLAN 218 (331)
Q Consensus 183 ------~--------------------------------------~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~ 218 (331)
. -....+..+.+.++.++++++.|+.|..+...|+.
T Consensus 232 llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ 311 (615)
T TIGR02903 232 LLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKY 311 (615)
T ss_pred hcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchh
Confidence 0 00112444555555666666655555544445666
Q ss_pred HHHhhcCCCCCCcEEEE--ecCCchH-Hhhc-cCCccccccccCCChHHHHHHHhhhC
Q 020066 219 LRLLVTNMDLVGFYVLV--TTQSRSV-ATMM-KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 219 l~~~l~~~~~~gs~IIv--TTR~~~v-a~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
++..+..+. +...|++ ||++... ...+ .....+ .+.+++.+|.+.++.+.+
T Consensus 312 ik~~~~~~~-~~~~VLI~aTt~~~~~l~~aLrSR~~~i--~~~pls~edi~~Il~~~a 366 (615)
T TIGR02903 312 IKKLFEEGA-PADFVLIGATTRDPEEINPALRSRCAEV--FFEPLTPEDIALIVLNAA 366 (615)
T ss_pred hhhhcccCc-cceEEEEEeccccccccCHHHHhceeEE--EeCCCCHHHHHHHHHHHH
Confidence 665555554 4444555 5665432 1111 123356 789999999999999865
No 11
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.51 E-value=5.5e-07 Score=79.78 Aligned_cols=136 Identities=15% Similarity=0.197 Sum_probs=78.4
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCcee
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~ 201 (331)
..+.+.+++. ......+.|+|..|+|||+||+.+++... ......++++.+.-.+ .. ..+...+.+ .-
T Consensus 25 ~~~~l~~~~~--~~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~---~~----~~~~~~~~~-~~ 92 (226)
T TIGR03420 25 LLAALRQLAA--GKGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ---AD----PEVLEGLEQ-AD 92 (226)
T ss_pred HHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH---hH----HHHHhhccc-CC
Confidence 4455555544 34456788999999999999999987532 1222344554322211 00 112222333 34
Q ss_pred EEEEeCCCCCCHH-hH-HHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHh
Q 020066 202 LIALDGLCDLNDD-NL-ANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLN 269 (331)
Q Consensus 202 LlVLDdvw~~~~~-~~-~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~ 269 (331)
+|||||+...... .| +.+...+.. .. .+.++|+||+... +...+.....+ .+.+++.++-..++.
T Consensus 93 lLvIDdi~~l~~~~~~~~~L~~~l~~~~~-~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i--~l~~l~~~e~~~~l~ 169 (226)
T TIGR03420 93 LVCLDDVEAIAGQPEWQEALFHLYNRVRE-AGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVF--QLPPLSDEEKIAALQ 169 (226)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHH-cCCeEEEECCCChHHCCcccHHHHHHHhcCeeE--ecCCCCHHHHHHHHH
Confidence 8999999864321 23 334443332 12 3458899887543 11222223457 899999999999987
Q ss_pred hhC
Q 020066 270 CEL 272 (331)
Q Consensus 270 ~~a 272 (331)
..+
T Consensus 170 ~~~ 172 (226)
T TIGR03420 170 SRA 172 (226)
T ss_pred HHH
Confidence 643
No 12
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.46 E-value=2e-06 Score=82.80 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=88.9
Q ss_pred CCCCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--------
Q 020066 116 ETELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-------- 182 (331)
Q Consensus 116 ~~~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-------- 182 (331)
+..++| +.++|...|... +.....+-|+|.+|+|||++++.++++.......-..++++.....+..
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 345667 667777776432 3334556799999999999999999854322211223344333221111
Q ss_pred -----------ccHHHHHHHHHhccC--CceeEEEEeCCCCCC----HHhHHHHHHhhcCCCCCCcE--EEEecCCchHH
Q 020066 183 -----------TVMNVITIRCKEIPS--SEMLLIALDGLCDLN----DDNLANLRLLVTNMDLVGFY--VLVTTQSRSVA 243 (331)
Q Consensus 183 -----------~~~~~l~~~l~~~l~--~kr~LlVLDdvw~~~----~~~~~~l~~~l~~~~~~gs~--IIvTTR~~~va 243 (331)
.+.+.+...+.+.+. +++.+||||+++... .+.+..+...+.. . .+++ +|.++...++.
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~-~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-Y-PGARIGVIGISSDLTFL 186 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-c-CCCeEEEEEEECCcchh
Confidence 133445555555553 457899999998632 2233344333322 2 3333 66666655443
Q ss_pred hhcc-------CCccccccccCCChHHHHHHHhhhC
Q 020066 244 TMMK-------QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 244 ~~~~-------~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.... ....+ .+.+++.++..+++..++
T Consensus 187 ~~l~~~~~s~~~~~~i--~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 187 YILDPRVKSVFRPEEI--YFPPYTADEIFDILKDRV 220 (394)
T ss_pred hhcCHHHHhcCCccee--ecCCCCHHHHHHHHHHHH
Confidence 3221 12346 799999999999998765
No 13
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.46 E-value=1.8e-06 Score=69.83 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHH-----HHHHHHhccCCc
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNV-----ITIRCKEIPSSE 199 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~-----l~~~l~~~l~~k 199 (331)
.+...+. ....+.+.|+|.+|+|||+|++.+++... ..-...+++..++.......... ...........+
T Consensus 9 ~i~~~~~--~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (151)
T cd00009 9 ALREALE--LPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAK 84 (151)
T ss_pred HHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCC
Confidence 3444443 33456788999999999999999998532 11123455554443332200000 011122234556
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCC------CCCCcEEEEecCCch
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNM------DLVGFYVLVTTQSRS 241 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~------~~~gs~IIvTTR~~~ 241 (331)
+.+|++||++.........+...+... . .+..||+||....
T Consensus 85 ~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ii~~~~~~~ 131 (151)
T cd00009 85 PGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDR-ENVRVIGATNRPL 131 (151)
T ss_pred CeEEEEeChhhhhHHHHHHHHHHHHhcCceeccC-CCeEEEEecCccc
Confidence 889999999864222223333333221 3 5788998888653
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=4.3e-06 Score=88.76 Aligned_cols=141 Identities=9% Similarity=0.092 Sum_probs=87.4
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc-c---------------c--
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL-S---------------T-- 183 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~---------------~-- 183 (331)
.+.+|.+.|.. ....+++.|.|++|.||||++...... ++.++|+++....+. . .
T Consensus 18 ~R~rl~~~l~~-~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~ 90 (903)
T PRK04841 18 VRERLLAKLSG-ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHC 90 (903)
T ss_pred cchHHHHHHhc-ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCccc
Confidence 67788888864 456789999999999999999887752 236889988644322 1 0
Q ss_pred -------------cHHHHHHHHHhcc-C-CceeEEEEeCCCCCCHHhHHHHHHhh-cCCCCCCcEEEEecCCch-H--Hh
Q 020066 184 -------------VMNVITIRCKEIP-S-SEMLLIALDGLCDLNDDNLANLRLLV-TNMDLVGFYVLVTTQSRS-V--AT 244 (331)
Q Consensus 184 -------------~~~~l~~~l~~~l-~-~kr~LlVLDdvw~~~~~~~~~l~~~l-~~~~~~gs~IIvTTR~~~-v--a~ 244 (331)
+...+...+...+ . +.+++|||||+...+......+...+ .... .+.++|||||... . ..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~-~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 91 SKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQP-ENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred chhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCC-CCeEEEEEeCCCCCCchHh
Confidence 0011112222222 2 67999999999775433333333333 2233 5678889999742 1 11
Q ss_pred hccCCcccccccc----CCChHHHHHHHhhhC
Q 020066 245 MMKQTVPEAEHLI----YFSESNSWSNLNCEL 272 (331)
Q Consensus 245 ~~~~~~~~~~~l~----~L~~~~s~~Lf~~~a 272 (331)
.-...... .+. +|+.+|+..+|....
T Consensus 170 l~~~~~~~--~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 170 LRVRDQLL--EIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred HHhcCcce--ecCHHhCCCCHHHHHHHHHhcc
Confidence 11112233 444 899999999998644
No 15
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.44 E-value=9.9e-07 Score=81.73 Aligned_cols=137 Identities=14% Similarity=0.120 Sum_probs=92.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHh--ccCCcee
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKE--IPSSEML 201 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~--~l~~kr~ 201 (331)
+-++..+.+ .+.++-+.+||.+|+||||||+.+.+..+... ..||..|.......+...+.+.-++ .+.++|.
T Consensus 150 ~gllrs~ie-q~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~~~l~krkT 224 (554)
T KOG2028|consen 150 DGLLRSLIE-QNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNEKSLTKRKT 224 (554)
T ss_pred chHHHHHHH-cCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHHHhhhccee
Confidence 444554544 56677788999999999999999998654433 3467766554443344444443333 3678899
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE--ecCCchH---HhhccCCccccccccCCChHHHHHHHhhh
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV--TTQSRSV---ATMMKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv--TTR~~~v---a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+|.+|.|..-+..+-+.++.. -. +|+-++| ||.|+.. +..+..+.++ -|++|+.++-..++.+-
T Consensus 225 ilFiDEiHRFNksQQD~fLP~---VE-~G~I~lIGATTENPSFqln~aLlSRC~Vf--vLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 225 ILFIDEIHRFNKSQQDTFLPH---VE-NGDITLIGATTENPSFQLNAALLSRCRVF--VLEKLPVNAVVTILMRA 293 (554)
T ss_pred EEEeHHhhhhhhhhhhcccce---ec-cCceEEEecccCCCccchhHHHHhcccee--EeccCCHHHHHHHHHHH
Confidence 999999987544444444433 34 6766554 7777662 3445567788 99999999999999883
No 16
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=7.2e-06 Score=76.63 Aligned_cols=148 Identities=10% Similarity=0.104 Sum_probs=95.1
Q ss_pred CCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc----ccCCCcCceEEEEe-CCCCCccccHHHHHH
Q 020066 119 LEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD----DIVSRFPRHIWFSV-GKILDLSTVMNVITI 190 (331)
Q Consensus 119 ~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~~~~l~~ 190 (331)
++| -.+.+.+++.. +.-....-++|..|+||||+|+.+++.- ....|+|...|... +..... +....+..
T Consensus 6 i~g~~~~~~~l~~~~~~-~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v-~~ir~~~~ 83 (313)
T PRK05564 6 IIGHENIKNRIKNSIIK-NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGV-DDIRNIIE 83 (313)
T ss_pred ccCcHHHHHHHHHHHHc-CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCH-HHHHHHHH
Confidence 456 34556666653 3334577899999999999998887632 22345665555432 111111 22223333
Q ss_pred HHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHH--hhccCCccccccccCCChHHHHHH
Q 020066 191 RCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVA--TMMKQTVPEAEHLIYFSESNSWSN 267 (331)
Q Consensus 191 ~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va--~~~~~~~~~~~~l~~L~~~~s~~L 267 (331)
.+.. -..+++-++|+|++...+...++.|+..+.... .++.+|++|.+.+.. +.-..+..+ .+.++++++....
T Consensus 84 ~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp-~~t~~il~~~~~~~ll~TI~SRc~~~--~~~~~~~~~~~~~ 160 (313)
T PRK05564 84 EVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPP-KGVFIILLCENLEQILDTIKSRCQIY--KLNRLSKEEIEKF 160 (313)
T ss_pred HHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHHHHhhceee--eCCCcCHHHHHHH
Confidence 2222 234566778888887777788999999998766 789999888765522 112334577 8999999998877
Q ss_pred Hhhh
Q 020066 268 LNCE 271 (331)
Q Consensus 268 f~~~ 271 (331)
+.+.
T Consensus 161 l~~~ 164 (313)
T PRK05564 161 ISYK 164 (313)
T ss_pred HHHH
Confidence 7654
No 17
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.38 E-value=3.4e-06 Score=86.77 Aligned_cols=133 Identities=19% Similarity=0.188 Sum_probs=78.8
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhcc--CCceeE
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIP--SSEMLL 202 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l--~~kr~L 202 (331)
.+.+.+. .....-+-++|.+|+||||||+.+++. ...+| +.++.......+...........+ .+++.+
T Consensus 42 ~L~~~i~--~~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i~dir~~i~~a~~~l~~~~~~~I 112 (725)
T PRK13341 42 LLRRAIK--ADRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGVKDLRAEVDRAKERLERHGKRTI 112 (725)
T ss_pred HHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhhHHHHHHHHHHHHHhhhcCCceE
Confidence 3444444 345556779999999999999999974 33333 111111111112222222222222 246789
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE--ecCCch--HHh-hccCCccccccccCCChHHHHHHHhhhC
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV--TTQSRS--VAT-MMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv--TTR~~~--va~-~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
|+||+++.-+...++.|...+. .|+.+++ ||.+.. +.. ......++ .+++|+.++...++.+.+
T Consensus 113 L~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~SR~~v~--~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 113 LFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKALVSRSRLF--RLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred EEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhccccce--ecCCCCHHHHHHHHHHHH
Confidence 9999998766666777776553 4555555 344432 211 22234568 999999999999998754
No 18
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=3.2e-06 Score=83.72 Aligned_cols=150 Identities=13% Similarity=0.043 Sum_probs=90.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEE------------------eC
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFS------------------VG 176 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------------------vs 176 (331)
.++| -.+.|.+++.. +.-...+-++|..|+||||+|+.+.+.-...+.+...+|.| .+
T Consensus 15 dvvGq~~v~~~L~~~i~~-~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~ 93 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQ-GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA 93 (504)
T ss_pred HhcChHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc
Confidence 4567 33444455443 22335668999999999999999877543322222223322 11
Q ss_pred CCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhhc-cCCcccc
Q 020066 177 KILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATMM-KQTVPEA 253 (331)
Q Consensus 177 ~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~~-~~~~~~~ 253 (331)
.... .....++...+.. -..+++-++|+|+++......++.|...+.... ..+.+|++|.. ..+...+ .....|
T Consensus 94 ~~~~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-~~t~~Il~t~~~~kl~~~I~SRc~~~- 170 (504)
T PRK14963 94 SNNS-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-EHVIFILATTEPEKMPPTILSRTQHF- 170 (504)
T ss_pred ccCC-HHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-CCEEEEEEcCChhhCChHHhcceEEE-
Confidence 1111 0222333333332 134567799999999877778888888887655 55565555543 3333222 234567
Q ss_pred ccccCCChHHHHHHHhhhC
Q 020066 254 EHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 254 ~~l~~L~~~~s~~Lf~~~a 272 (331)
++.+++.++....+.+.+
T Consensus 171 -~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 171 -RFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred -EecCCCHHHHHHHHHHHH
Confidence 999999999999988765
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.35 E-value=9.1e-07 Score=78.04 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=71.6
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--------------------
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL-------------------- 181 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-------------------- 181 (331)
+++.|.+++.. +....+.|+|..|+|||+|++.+.+..+- ..+ ..+|+........
T Consensus 7 el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (234)
T PF01637_consen 7 ELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINELKE-KGY-KVVYIDFLEESNESSLRSFIEETSLADELSEAL 82 (234)
T ss_dssp HHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHH
T ss_pred HHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHhhh-cCC-cEEEEecccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 66677776653 34677889999999999999999874311 111 1122211111100
Q ss_pred --------------------cccHHHHHHHHHhccCCceeEEEEeCCCCCC------HHhHHHHHHhhcC--CCCCCcEE
Q 020066 182 --------------------STVMNVITIRCKEIPSSEMLLIALDGLCDLN------DDNLANLRLLVTN--MDLVGFYV 233 (331)
Q Consensus 182 --------------------~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~------~~~~~~l~~~l~~--~~~~gs~I 233 (331)
......+...+.+ .+++++||+|++.... ......+...+.. .. ..-.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 159 (234)
T PF01637_consen 83 GISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQ-QNVSI 159 (234)
T ss_dssp HHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEE
T ss_pred hhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcccc-CCceE
Confidence 0122222222222 2335999999986643 2222333333332 22 34445
Q ss_pred EEecCCchHHhh--------ccCCccccccccCCChHHHHHHHhhhC
Q 020066 234 LVTTQSRSVATM--------MKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 234 IvTTR~~~va~~--------~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
|++..+..+... .+....+ .|++|+.+++++++...+
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLFGRFSHI--ELKPLSKEEAREFLKELF 204 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTTT---EE--EE----HHHHHHHHHHHH
T ss_pred EEECCchHHHHHhhcccCccccccceE--EEeeCCHHHHHHHHHHHH
Confidence 555555544433 2223347 899999999999999843
No 20
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=8.6e-06 Score=82.89 Aligned_cols=150 Identities=14% Similarity=0.135 Sum_probs=91.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 175 (331)
.++| -++.|.+++.. +.-...+-++|..|+||||+|+.+.+.-.... .|...+++.-
T Consensus 17 EVIGQe~Vv~~L~~aL~~-gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 17 SLVGQEHVVRALTHALDG-GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHcCcHHHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 4668 45566666653 22244556999999999999987765322211 1222333322
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~ 252 (331)
+....+ ++...+.+.+... ..++.-++|||++...+...|+.|+..+-... .+.++|+||.+.. +. ...+.+..|
T Consensus 96 as~rgV-DdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP-~~v~FILaTtd~~KIp~TIrSRCq~f 173 (830)
T PRK07003 96 ASNRGV-DEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP-PHVKFILATTDPQKIPVTVLSRCLQF 173 (830)
T ss_pred cccccH-HHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC-CCeEEEEEECChhhccchhhhheEEE
Confidence 211111 2222333332222 34555689999999988788998888776544 5778777776654 32 222344567
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
++++++.++..+.+.+..
T Consensus 174 --~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 174 --NLKQMPAGHIVSHLERIL 191 (830)
T ss_pred --ecCCcCHHHHHHHHHHHH
Confidence 999999999988887754
No 21
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.27 E-value=2.6e-06 Score=76.78 Aligned_cols=41 Identities=7% Similarity=-0.214 Sum_probs=35.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
-..++|+|.+|+|||||++.+|++.... +|+..+|+++++.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~e 56 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDE 56 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccC
Confidence 4568899999999999999999975444 8999999997766
No 22
>PRK09087 hypothetical protein; Validated
Probab=98.23 E-value=8.2e-06 Score=72.65 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=71.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCC--CHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDL--NDD 214 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--~~~ 214 (331)
-+.+.|+|..|+|||+|++.+++... ..+++.. .........+.. -+|++||+... +..
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~----------~~~~~~~~~~~~--~~l~iDDi~~~~~~~~ 104 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN----------EIGSDAANAAAE--GPVLIEDIDAGGFDET 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH----------HcchHHHHhhhc--CeEEEECCCCCCCCHH
Confidence 45689999999999999999887431 1233221 111111112221 37888999643 233
Q ss_pred hHHHHHHhhcCCCCCCcEEEEecCC---------chHHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 215 NLANLRLLVTNMDLVGFYVLVTTQS---------RSVATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 215 ~~~~l~~~l~~~~~~gs~IIvTTR~---------~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+-.+...+.. .|..||+|++. ++....+....++ ++++++.++-..++++.+
T Consensus 105 ~lf~l~n~~~~---~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~--~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 105 GLFHLINSVRQ---AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVV--EIGEPDDALLSQVIFKLF 166 (226)
T ss_pred HHHHHHHHHHh---CCCeEEEECCCChHHhccccccHHHHHhCCcee--ecCCCCHHHHHHHHHHHH
Confidence 44444444432 46789999873 3344444556678 999999999999999876
No 23
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.6e-05 Score=79.81 Aligned_cols=150 Identities=13% Similarity=0.126 Sum_probs=89.8
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC------------------------CCcCce
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV------------------------SRFPRH 170 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------------~~F~~~ 170 (331)
.++| -++.|.+.+.. +.-...+-++|..|+||||+|+.+.+.-... ..|...
T Consensus 17 dVIGQe~vv~~L~~al~~-gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQ-QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHcCcHHHHHHHHHHHHh-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 4678 44566666653 2334566789999999999998886533221 011122
Q ss_pred EEEEeCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE-EecCCchHHhhc-c
Q 020066 171 IWFSVGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL-VTTQSRSVATMM-K 247 (331)
Q Consensus 171 ~wv~vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II-vTTR~~~va~~~-~ 247 (331)
+++..+....+ ++..++...+.. -..++.-++|||++...+...++.|+..+-.-. .++++| +||....+...+ +
T Consensus 96 iEIdAas~~gV-DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP-~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 96 IEMDAASNRGV-DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred eEecccccCCH-HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC-CCceEEEEeCChHhhhhHHHH
Confidence 23322211111 222333333222 235667799999999988888999888876544 455654 555444454332 3
Q ss_pred CCccccccccCCChHHHHHHHhhhC
Q 020066 248 QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 248 ~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+..| .++.++.++..+.+.+.+
T Consensus 174 RCq~f--~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 174 RCLQF--NLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred HHHhc--ccCCCChHHHHHHHHHHH
Confidence 45578 999999999888877643
No 24
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2.8e-05 Score=74.18 Aligned_cols=151 Identities=15% Similarity=0.111 Sum_probs=89.1
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC-------------------cCceEEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR-------------------FPRHIWFS 174 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~ 174 (331)
..++| -.+.+.+.+.. +.-...+-++|..|+||||+|+.+.+.-..... +....++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~-~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~ 94 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL-GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEID 94 (363)
T ss_pred hhccChHHHHHHHHHHHHc-CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEec
Confidence 34668 44455555553 233456789999999999999998764321111 11122221
Q ss_pred eCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~ 251 (331)
.+.... ..+...+...+... ..+++-++|+|++.......++.++..+.... ..+++|++|.+.+ +... .+....
T Consensus 95 ~~~~~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-~~~~fIl~t~~~~~l~~tI~SRc~~ 172 (363)
T PRK14961 95 AASRTK-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-QHIKFILATTDVEKIPKTILSRCLQ 172 (363)
T ss_pred ccccCC-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEcCChHhhhHHHHhhceE
Confidence 111111 12233333332221 23456699999999877677888888876655 6677777665433 3322 223456
Q ss_pred ccccccCCChHHHHHHHhhhC
Q 020066 252 EAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ ++.+++.++....+.+.+
T Consensus 173 ~--~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 173 F--KLKIISEEKIFNFLKYIL 191 (363)
T ss_pred E--eCCCCCHHHHHHHHHHHH
Confidence 7 999999999888777644
No 25
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.21 E-value=2.1e-05 Score=73.92 Aligned_cols=150 Identities=15% Similarity=0.176 Sum_probs=83.3
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcC-ceEEEEeCCCCCcc----------
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFP-RHIWFSVGKILDLS---------- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~---------- 182 (331)
..++| .++.+.+++. .+..+.+-++|..|+||||+|+.+.+.-. ...+. ..+.++.+...+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~--~~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 91 (337)
T PRK12402 15 EDILGQDEVVERLSRAVD--SPNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVEDPRF 91 (337)
T ss_pred HHhcCCHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhcCcch
Confidence 34567 4455555554 33444577999999999999999876422 11122 12333332211000
Q ss_pred ------------ccHHHHHHHHH---hc--cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHh
Q 020066 183 ------------TVMNVITIRCK---EI--PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VAT 244 (331)
Q Consensus 183 ------------~~~~~l~~~l~---~~--l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~ 244 (331)
...+.....+. .. ..+.+-+||+||+..........+...+.... ..+++|+||.+.. +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 92 AHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-RTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-CCCeEEEEeCChhhCch
Confidence 00111111111 11 12345589999998765555566666655444 5577888775433 212
Q ss_pred hc-cCCccccccccCCChHHHHHHHhhhC
Q 020066 245 MM-KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 245 ~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+ .....+ .+.+++.++...++...+
T Consensus 171 ~L~sr~~~v--~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 171 PIRSRCLPL--FFRAPTDDELVDVLESIA 197 (337)
T ss_pred hhcCCceEE--EecCCCHHHHHHHHHHHH
Confidence 12 223456 889999999888887754
No 26
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.21 E-value=1.2e-05 Score=72.16 Aligned_cols=123 Identities=13% Similarity=0.069 Sum_probs=73.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCC-HH
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLN-DD 214 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-~~ 214 (331)
..+.+.|+|..|+|||+|++.+++...- .-..+.++.+..... .... +.+.+.. --+|++||+.... ..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~~~---~~~~----~~~~~~~-~dlliiDdi~~~~~~~ 113 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKRAW---FVPE----VLEGMEQ-LSLVCIDNIECIAGDE 113 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHHhh---hhHH----HHHHhhh-CCEEEEeChhhhcCCH
Confidence 4457889999999999999998874321 112344554432111 1111 1222211 2489999996532 13
Q ss_pred hHHHH----HHhhcCCCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 215 NLANL----RLLVTNMDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 215 ~~~~l----~~~l~~~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.|+.- ...... . .+.++|+||+... +...+....++ .++++++++-.+++.+++
T Consensus 114 ~~~~~lf~l~n~~~e-~-g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~--~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 114 LWEMAIFDLYNRILE-S-GRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY--KLQPLSDEEKLQALQLRA 180 (235)
T ss_pred HHHHHHHHHHHHHHH-c-CCCeEEEeCCCChHHcCcccHHHHHHHhCCcee--eecCCCHHHHHHHHHHHH
Confidence 45432 222221 1 2347999997553 33344455678 999999999999998766
No 27
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.20 E-value=2.3e-06 Score=81.06 Aligned_cols=41 Identities=10% Similarity=-0.130 Sum_probs=35.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL 179 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 179 (331)
....|+|.+|+||||||+.||++.... +|+.++||++++..
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER 210 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDER 210 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCc
Confidence 457799999999999999999976544 89999999988776
No 28
>PRK08727 hypothetical protein; Validated
Probab=98.19 E-value=5.9e-06 Score=73.93 Aligned_cols=124 Identities=16% Similarity=0.154 Sum_probs=74.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCC-HHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLN-DDN 215 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-~~~ 215 (331)
...+.|+|..|+|||.|++.+++... +......|++..+... .+...+ +.+. +.-+|||||+.... ...
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~--~~~~~~~y~~~~~~~~------~~~~~~-~~l~-~~dlLiIDDi~~l~~~~~ 110 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAE--QAGRSSAYLPLQAAAG------RLRDAL-EALE-GRSLVALDGLESIAGQRE 110 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEeHHHhhh------hHHHHH-HHHh-cCCEEEEeCcccccCChH
Confidence 34589999999999999999987532 2223455665432111 111111 1222 23589999997532 123
Q ss_pred HHHHHHhhcC--CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 216 LANLRLLVTN--MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 216 ~~~l~~~l~~--~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
|......+.+ .. +|..||+||+... +...+.....+ .+++++.++-..++++++.
T Consensus 111 ~~~~lf~l~n~~~~-~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~--~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 111 DEVALFDFHNRARA-AGITLLYTARQMPDGLALVLPDLRSRLAQCIRI--GLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred HHHHHHHHHHHHHH-cCCeEEEECCCChhhhhhhhHHHHHHHhcCceE--EecCCCHHHHHHHHHHHHH
Confidence 4332222221 12 4667999998533 22223334578 9999999999999998764
No 29
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.18 E-value=4.8e-05 Score=65.57 Aligned_cols=141 Identities=11% Similarity=-0.022 Sum_probs=84.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC--------------------CCcCceEEEEeCCCCCccccH
Q 020066 126 VKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV--------------------SRFPRHIWFSVGKILDLSTVM 185 (331)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~ 185 (331)
+.+.+.. +.-...+-++|..|+||||+|+.+...-... .+.| ..++.........+..
T Consensus 4 l~~~i~~-~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d-~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 4 LKRALEK-GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPD-LHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCc-EEEeccccCcCCHHHH
Confidence 4444442 2223678899999999999998876532211 1111 1222211110001222
Q ss_pred HHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhc-cCCccccccccCCChH
Q 020066 186 NVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMM-KQTVPEAEHLIYFSES 262 (331)
Q Consensus 186 ~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~-~~~~~~~~~l~~L~~~ 262 (331)
..+...+... ..+.+-++|+|++.......++.|+..+.... ..+.+|++|++.. +...+ .....+ .+.+++.+
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~i~sr~~~~--~~~~~~~~ 158 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPP-PNTLFILITPSPEKLLPTIRSRCQVL--PFPPLSEE 158 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhChHHHHhhcEEe--eCCCCCHH
Confidence 2233333332 34567789999998877777888888887655 6677777776542 22211 233567 99999999
Q ss_pred HHHHHHhhh
Q 020066 263 NSWSNLNCE 271 (331)
Q Consensus 263 ~s~~Lf~~~ 271 (331)
+..+.+.+.
T Consensus 159 ~~~~~l~~~ 167 (188)
T TIGR00678 159 ALLQWLIRQ 167 (188)
T ss_pred HHHHHHHHc
Confidence 998888875
No 30
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.18 E-value=3.8e-05 Score=76.02 Aligned_cols=150 Identities=13% Similarity=0.070 Sum_probs=89.9
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC----------cCc-------------eE
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----------FPR-------------HI 171 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------F~~-------------~~ 171 (331)
.++| -...|.+.+.. +.-..-+-++|..|+||||+|+.+++.-..... +.| ..
T Consensus 22 dliGq~~vv~~L~~ai~~-~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILN-DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 3557 34444444442 233356778999999999999999764322111 100 11
Q ss_pred EEEeCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE-EecCCchHHhhcc-C
Q 020066 172 WFSVGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL-VTTQSRSVATMMK-Q 248 (331)
Q Consensus 172 wv~vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II-vTTR~~~va~~~~-~ 248 (331)
.+.......+ ++...+...... -..+++-++|+|+++......|+.|+..+.... ..+.+| .||+...+...+. .
T Consensus 101 eidaas~~~v-d~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp-~~~vfI~aTte~~kI~~tI~SR 178 (507)
T PRK06645 101 EIDAASKTSV-DDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP-PHIIFIFATTEVQKIPATIISR 178 (507)
T ss_pred EeeccCCCCH-HHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC-CCEEEEEEeCChHHhhHHHHhc
Confidence 1111111110 223333333222 245677899999999877788999988887655 566655 4555555544332 3
Q ss_pred CccccccccCCChHHHHHHHhhhC
Q 020066 249 TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 249 ~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
...+ .+.+++.++....+.+.+
T Consensus 179 c~~~--ef~~ls~~el~~~L~~i~ 200 (507)
T PRK06645 179 CQRY--DLRRLSFEEIFKLLEYIT 200 (507)
T ss_pred ceEE--EccCCCHHHHHHHHHHHH
Confidence 4467 899999999999988766
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.9e-05 Score=80.51 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=91.3
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC-------------------cCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR-------------------FPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~v 175 (331)
.++| -+..|.+.+.. +.-...+-++|..|+||||+|+.+.+.-..... |...+++..
T Consensus 17 dIIGQe~Iv~~LknaI~~-~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQ-QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HhcCcHHHHHHHHHHHHh-CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 4678 44556666653 222345578999999999999999864322111 111122211
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhh-ccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATM-MKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~-~~~~~~~ 252 (331)
+.. ...+....+...+... ..+++-++|||++.......++.|+..+-... ..+++|++|.+ ..+... ...+..|
T Consensus 96 as~-~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-~~vrFILaTTe~~kLl~TIlSRCq~f 173 (944)
T PRK14949 96 ASR-TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTVLSRCLQF 173 (944)
T ss_pred ccc-cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-CCeEEEEECCCchhchHHHHHhheEE
Confidence 110 1112233333333322 34677799999999988888899888876544 55666655544 434322 3344678
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
++++|+.++....+.+.+
T Consensus 174 --~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 174 --NLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred --eCCCCCHHHHHHHHHHHH
Confidence 999999999998887743
No 32
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.8e-05 Score=76.56 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=90.1
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC-------------------CCcCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV-------------------SRFPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~v 175 (331)
.++| -...|.+.+.. +.-...+-++|..|+||||+|+.+.+.-... ..|...+++..
T Consensus 17 diiGq~~~v~~L~~~i~~-~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 17 EVAGQQHALNSLVHALET-QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 4667 44566666653 2334557789999999999999987632111 01222333322
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE-EecCCchHHhh-ccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL-VTTQSRSVATM-MKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II-vTTR~~~va~~-~~~~~~~ 252 (331)
.....+ ++...+...+... ..+++-++|+|++...+...++.|+..+-... ..+.+| +||....+... ......+
T Consensus 96 as~~gv-d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-~~v~fIL~Ttd~~kil~tI~SRc~~~ 173 (546)
T PRK14957 96 ASRTGV-EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-EYVKFILATTDYHKIPVTILSRCIQL 173 (546)
T ss_pred ccccCH-HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-CCceEEEEECChhhhhhhHHHheeeE
Confidence 121111 2333344433322 34567799999998877778888888887654 556655 45544444422 2344578
Q ss_pred cccccCCChHHHHHHHhhh
Q 020066 253 AEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~ 271 (331)
++++++.++-...+.+.
T Consensus 174 --~f~~Ls~~eI~~~L~~i 190 (546)
T PRK14957 174 --HLKHISQADIKDQLKII 190 (546)
T ss_pred --EeCCCCHHHHHHHHHHH
Confidence 99999999887776653
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=3.6e-05 Score=72.10 Aligned_cols=146 Identities=11% Similarity=0.085 Sum_probs=82.8
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHh
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKE 194 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~ 194 (331)
.++| -.+.|..++. .+..+-+-++|..|+||||+|+.+.+.-. ...|... .+.+... +. ...+.+...+..
T Consensus 14 ~~~g~~~~~~~L~~~~~--~~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~-~~eln~s-d~-~~~~~vr~~i~~ 87 (319)
T PLN03025 14 DIVGNEDAVSRLQVIAR--DGNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEA-VLELNAS-DD-RGIDVVRNKIKM 87 (319)
T ss_pred HhcCcHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccc-eeeeccc-cc-ccHHHHHHHHHH
Confidence 4557 3344444444 33444466899999999999999887421 1122211 1111111 10 112223322221
Q ss_pred c------c-CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhc-cCCccccccccCCChHHHH
Q 020066 195 I------P-SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMM-KQTVPEAEHLIYFSESNSW 265 (331)
Q Consensus 195 ~------l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~-~~~~~~~~~l~~L~~~~s~ 265 (331)
. + .++.-+++||++........+.+...+.... ..+++|+++.... +-... .....+ +++++++++..
T Consensus 88 ~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-~~t~~il~~n~~~~i~~~L~SRc~~i--~f~~l~~~~l~ 164 (319)
T PLN03025 88 FAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-NTTRFALACNTSSKIIEPIQSRCAIV--RFSRLSDQEIL 164 (319)
T ss_pred HHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-CCceEEEEeCCccccchhHHHhhhcc--cCCCCCHHHHH
Confidence 1 1 2456799999999876666666766664434 5677777764432 21111 223467 99999999988
Q ss_pred HHHhhhC
Q 020066 266 SNLNCEL 272 (331)
Q Consensus 266 ~Lf~~~a 272 (331)
..+...+
T Consensus 165 ~~L~~i~ 171 (319)
T PLN03025 165 GRLMKVV 171 (319)
T ss_pred HHHHHHH
Confidence 8887654
No 34
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=4.1e-05 Score=77.12 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=89.7
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 175 (331)
.++| -...|.+++.. +.-...+-++|..|+||||+|+.+.+.-.... .|...+.+..
T Consensus 16 dVIGQe~vv~~L~~aI~~-grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 16 ELVGQNHVSRALSSALER-GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 4678 45566666653 23346778999999999999998866422211 1111222222
Q ss_pred CCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~ 252 (331)
+....+ ++...+...+.. ...++.-++|+|++...+...++.|+..+.... .+.++|++|.+.. +. .....+..+
T Consensus 95 As~~~V-ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-~~v~FILaTtd~~kIp~TIlSRCq~f 172 (702)
T PRK14960 95 ASRTKV-EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-EHVKFLFATTDPQKLPITVISRCLQF 172 (702)
T ss_pred cccCCH-HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-CCcEEEEEECChHhhhHHHHHhhhee
Confidence 111111 122222222211 134566789999999877778888888876655 5677777775533 32 222344567
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
++++++.++....+.+.+
T Consensus 173 --eFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 173 --TLRPLAVDEITKHLGAIL 190 (702)
T ss_pred --eccCCCHHHHHHHHHHHH
Confidence 999999999888877654
No 35
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.09 E-value=3.3e-05 Score=73.52 Aligned_cols=154 Identities=15% Similarity=0.078 Sum_probs=84.3
Q ss_pred CCCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhccccC-CCc---CceEEEEeCCCCCcc-----
Q 020066 117 TELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV-SRF---PRHIWFSVGKILDLS----- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~----- 182 (331)
..++| +.+.|...|... +.....+.|+|.+|+|||++++.++++-.-. ... -..+|++.....+..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 35778 777888877532 3344568899999999999999998742110 111 123455433222111
Q ss_pred ----------------ccHHHHHHHHHhcc--CCceeEEEEeCCCCCC---HHhHHHHHHhh-cCCC-CCCcEEEEecCC
Q 020066 183 ----------------TVMNVITIRCKEIP--SSEMLLIALDGLCDLN---DDNLANLRLLV-TNMD-LVGFYVLVTTQS 239 (331)
Q Consensus 183 ----------------~~~~~l~~~l~~~l--~~kr~LlVLDdvw~~~---~~~~~~l~~~l-~~~~-~~gs~IIvTTR~ 239 (331)
.+...+...+.+.+ .+++++||||+++... .+....+.... .... .....+|.+|..
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECC
Confidence 01222333344444 3568899999998751 11122222210 1111 022344555544
Q ss_pred chHHhhcc-----C--CccccccccCCChHHHHHHHhhhC
Q 020066 240 RSVATMMK-----Q--TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 240 ~~va~~~~-----~--~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
......+. . ...+ .++|.+.++..+++..++
T Consensus 175 ~~~~~~l~~~~~s~~~~~~i--~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 175 LKFRENLDPRVKSSLCEEEI--IFPPYDAEELRDILENRA 212 (365)
T ss_pred cchHhhcCHHHhccCCccee--eeCCCCHHHHHHHHHHHH
Confidence 43322111 1 1346 899999999999999875
No 36
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.09 E-value=2.3e-05 Score=72.82 Aligned_cols=141 Identities=11% Similarity=0.056 Sum_probs=78.3
Q ss_pred CCCC---cHHHHHHHHhcC---CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHH
Q 020066 118 ELEG---SVDSVKNALLRD---GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIR 191 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~ 191 (331)
.++| .++.|..++... ......+.++|++|+|||+||+.+.+.... .| ..+..+.. .....+...
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~--~~---~~~~~~~~----~~~~~l~~~ 75 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV--NL---KITSGPAL----EKPGDLAAI 75 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--CE---EEeccchh----cCchhHHHH
Confidence 4567 455566666432 233556779999999999999999884321 11 11111100 111222222
Q ss_pred HHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcC-------------------CCCCCcEEEEecCCchHHhhc-c-CCc
Q 020066 192 CKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTN-------------------MDLVGFYVLVTTQSRSVATMM-K-QTV 250 (331)
Q Consensus 192 l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~-------------------~~~~gs~IIvTTR~~~va~~~-~-~~~ 250 (331)
+.. + +...+|++|++........+.+...+.. .. +.+-|..||+...+...+ . ...
T Consensus 76 l~~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 76 LTN-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred HHh-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCC-CeEEEEecCCccccCHHHHhhcce
Confidence 222 2 2456899999876543333333322210 11 244556667765443321 1 123
Q ss_pred cccccccCCChHHHHHHHhhhC
Q 020066 251 PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+ .+++++.++..+++.+.+
T Consensus 153 ~~--~l~~l~~~e~~~il~~~~ 172 (305)
T TIGR00635 153 IL--RLEFYTVEELAEIVSRSA 172 (305)
T ss_pred EE--EeCCCCHHHHHHHHHHHH
Confidence 56 899999999999999866
No 37
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.05 E-value=9.1e-05 Score=68.97 Aligned_cols=148 Identities=14% Similarity=0.121 Sum_probs=82.7
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeC--CCCCccccHHHHHHHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVG--KILDLSTVMNVITIRC 192 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~~~~~~l~~~l 192 (331)
.++| ..+.+..++. ....+.+-++|..|+||||+++.+.+.-. ...+. ..++.+. .......-.+.+....
T Consensus 18 ~~~g~~~~~~~l~~~i~--~~~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~~~~~~i~~~~ 93 (319)
T PRK00440 18 EIVGQEEIVERLKSYVK--EKNMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGIDVIRNKIKEFA 93 (319)
T ss_pred HhcCcHHHHHHHHHHHh--CCCCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchHHHHHHHHHHH
Confidence 3567 4555555554 33444578999999999999999987421 11121 1223322 1111100011111111
Q ss_pred Hhc-cC-CceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhc-cCCccccccccCCChHHHHHHH
Q 020066 193 KEI-PS-SEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMM-KQTVPEAEHLIYFSESNSWSNL 268 (331)
Q Consensus 193 ~~~-l~-~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~-~~~~~~~~~l~~L~~~~s~~Lf 268 (331)
... .. ..+-++++|++..........+...+.... ..+++|+++.... +.... .....+ .+.+++.++....+
T Consensus 94 ~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~~~~--~~~~l~~~ei~~~l 170 (319)
T PRK00440 94 RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-QNTRFILSCNYSSKIIDPIQSRCAVF--RFSPLKKEAVAERL 170 (319)
T ss_pred hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-CCCeEEEEeCCccccchhHHHHhhee--eeCCCCHHHHHHHH
Confidence 111 12 346689999987765555666776665544 5677777764322 21111 122356 89999999988887
Q ss_pred hhhC
Q 020066 269 NCEL 272 (331)
Q Consensus 269 ~~~a 272 (331)
.+.+
T Consensus 171 ~~~~ 174 (319)
T PRK00440 171 RYIA 174 (319)
T ss_pred HHHH
Confidence 7655
No 38
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=8.1e-05 Score=73.26 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=83.3
Q ss_pred CCCC--cH-HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC-------------------cCceEEEEe
Q 020066 118 ELEG--SV-DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR-------------------FPRHIWFSV 175 (331)
Q Consensus 118 ~~vG--~~-~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~v 175 (331)
.++| .. ..|...+.. +.-...+-++|..|+||||+|+.+.+.-..... +.....+..
T Consensus 15 divGq~~i~~~L~~~i~~-~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 15 EVVGQDHVKKLIINALKK-NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 4668 22 333333332 222355778999999999999999764221110 001122222
Q ss_pred CCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhhc-cCCccc
Q 020066 176 GKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATMM-KQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~~-~~~~~~ 252 (331)
+..... .....+...... ...+++-++|+|++..-.....+.++..+.... ..+.+|++|.+ ..+...+ .....+
T Consensus 94 a~~~gi-d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-~~vv~Ilattn~~kl~~~L~SR~~vv 171 (472)
T PRK14962 94 ASNRGI-DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-SHVVFVLATTNLEKVPPTIISRCQVI 171 (472)
T ss_pred cccCCH-HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-CcEEEEEEeCChHhhhHHHhcCcEEE
Confidence 111111 122222222221 134567799999998765566777777776544 44555544443 3343322 344577
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+.+++.++....+.+.+
T Consensus 172 --~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 172 --EFRNISDELIIKRLQEVA 189 (472)
T ss_pred --EECCccHHHHHHHHHHHH
Confidence 899999999888888765
No 39
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.03 E-value=2.9e-05 Score=73.03 Aligned_cols=143 Identities=12% Similarity=0.077 Sum_probs=78.8
Q ss_pred CCCCC---cHHHHHHHHhc---CCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHH
Q 020066 117 TELEG---SVDSVKNALLR---DGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITI 190 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~ 190 (331)
..++| .++.+...+.. .......+-++|++|+|||+||+.+.+.... .+ .++..+ ... ....+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~--~~---~~~~~~-~~~---~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV--NI---RITSGP-ALE---KPGDLAA 95 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC--Ce---EEEecc-ccc---ChHHHHH
Confidence 35678 44455444432 1344566789999999999999999885322 11 111111 111 1122222
Q ss_pred HHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCC-------------------CCCCcEEEEecCCchHHhhcc-C-C
Q 020066 191 RCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNM-------------------DLVGFYVLVTTQSRSVATMMK-Q-T 249 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-------------------~~~gs~IIvTTR~~~va~~~~-~-~ 249 (331)
.+. .+ ++..+|++|++........+.+...+... . +.+-|..||+...+..... . .
T Consensus 96 ~l~-~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~~~~l~~~L~sRf~ 172 (328)
T PRK00080 96 ILT-NL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTRAGLLTSPLRDRFG 172 (328)
T ss_pred HHH-hc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCCcccCCHHHHHhcC
Confidence 222 22 34568999999765433333333222110 1 2344566666554433221 1 2
Q ss_pred ccccccccCCChHHHHHHHhhhCC
Q 020066 250 VPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
..+ .+++++.++..+++.+.+-
T Consensus 173 ~~~--~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 173 IVQ--RLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred eee--ecCCCCHHHHHHHHHHHHH
Confidence 346 8999999999999998753
No 40
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=7.4e-05 Score=75.53 Aligned_cols=151 Identities=12% Similarity=0.115 Sum_probs=87.7
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC------------------------CcCc
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS------------------------RFPR 169 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F~~ 169 (331)
..++| -+..|.+++.. +.-...+-++|..|+||||+|+.+.+.-.... .+..
T Consensus 16 ~dviGQe~vv~~L~~~l~~-~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D 94 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ-QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVD 94 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCc
Confidence 35678 44556666553 23345667899999999999998844221110 1111
Q ss_pred eEEEEeCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhh-c
Q 020066 170 HIWFSVGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATM-M 246 (331)
Q Consensus 170 ~~wv~vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~-~ 246 (331)
.+++..+....+ ++...+...+.. -..++.-++|||++...+...++.++..+.... ..+++|++| ....+... .
T Consensus 95 ~~eldaas~~~V-d~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-~~~~fIL~Ttd~~kil~TIl 172 (618)
T PRK14951 95 YTELDAASNRGV-DEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-EYLKFVLATTDPQKVPVTVL 172 (618)
T ss_pred eeecCcccccCH-HHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-CCeEEEEEECCchhhhHHHH
Confidence 122211111111 122222222221 123455689999999988888988888876544 556666555 44444322 2
Q ss_pred cCCccccccccCCChHHHHHHHhhhC
Q 020066 247 KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 ~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.....| ++++|+.++....+.+.+
T Consensus 173 SRc~~~--~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 173 SRCLQF--NLRPMAPETVLEHLTQVL 196 (618)
T ss_pred Hhceee--ecCCCCHHHHHHHHHHHH
Confidence 345578 999999999888877643
No 41
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.03 E-value=3.4e-06 Score=67.92 Aligned_cols=101 Identities=17% Similarity=0.232 Sum_probs=62.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcccc---CCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDI---VSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEI 195 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~ 195 (331)
+-+.+.|+|.+|+|||++++.+.++..- ...-...+|+..+...+.. .+...+...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 3467889999999999999999874211 0002245577766555333 2456666666666
Q ss_pred cCCce-eEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCC
Q 020066 196 PSSEM-LLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQS 239 (331)
Q Consensus 196 l~~kr-~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~ 239 (331)
+...+ .+||+|++..- +...++.|..... . .+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~-~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--E-SNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--S-CBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--C-CCCeEEEEECh
Confidence 65444 59999999875 5555666655443 4 67788777653
No 42
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=8.2e-05 Score=75.44 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=89.9
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFS 174 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 174 (331)
..++| -+..|.+.+.. +.-...+-++|..|+||||+|+.+.+.-.... .|...+.+.
T Consensus 16 ~divGQe~vv~~L~~~l~~-~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL-GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec
Confidence 34678 44455555553 22234567899999999999998865432211 111122222
Q ss_pred eCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHh-hccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVAT-MMKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~-~~~~~~~ 251 (331)
.+.... .++...+...+... ..+++-++|||++...+...++.|+..+-... ..+++|++|.+ ..+.. ....+..
T Consensus 95 aas~~~-VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp-~~v~FIL~Tt~~~kLl~TI~SRC~~ 172 (647)
T PRK07994 95 AASRTK-VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQ 172 (647)
T ss_pred ccccCC-HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCC-CCeEEEEecCCccccchHHHhhheE
Confidence 111111 12333333333322 35667799999999888888888888776544 45565555544 44432 2334557
Q ss_pred ccccccCCChHHHHHHHhhhC
Q 020066 252 EAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~a 272 (331)
| ++++|+.++....+.+..
T Consensus 173 ~--~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 173 F--HLKALDVEQIRQQLEHIL 191 (647)
T ss_pred e--eCCCCCHHHHHHHHHHHH
Confidence 8 999999999988887643
No 43
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.01 E-value=1.8e-05 Score=63.44 Aligned_cols=96 Identities=21% Similarity=0.140 Sum_probs=54.5
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--cccHHHHHHHHHhccCC-ceeEEEEeCCCCCCHHh-
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL--STVMNVITIRCKEIPSS-EMLLIALDGLCDLNDDN- 215 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~l~~~l~~~l~~-kr~LlVLDdvw~~~~~~- 215 (331)
|-|+|..|+|||++|+.+.+.-. .+ .+.++.+...+. ......+...+.+.-.. ++.+|++||+.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~--~~---~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~ 75 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG--FP---FIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ 75 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT--SE---EEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc--cc---cccccccccccccccccccccccccccccccccceeeeeccchhcccccc
Confidence 46899999999999999998532 11 233433322211 12333333334333223 48999999987643322
Q ss_pred ----------HHHHHHhhcCCCC--CCcEEEEecCCc
Q 020066 216 ----------LANLRLLVTNMDL--VGFYVLVTTQSR 240 (331)
Q Consensus 216 ----------~~~l~~~l~~~~~--~gs~IIvTTR~~ 240 (331)
...+...+..... .+..||.||...
T Consensus 76 ~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~ 112 (132)
T PF00004_consen 76 PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSP 112 (132)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSG
T ss_pred cccccccccccceeeecccccccccccceeEEeeCCh
Confidence 4455555544331 235677777653
No 44
>PRK05642 DNA replication initiation factor; Validated
Probab=97.99 E-value=2.8e-05 Score=69.63 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=72.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCC-HHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLN-DDN 215 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-~~~ 215 (331)
...+.|+|..|+|||.|++.+++... ..-..++|++...-.. .. ..+.+.+.+- =+|++||+.... ...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~~~~---~~----~~~~~~~~~~-d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAELLD---RG----PELLDNLEQY-ELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHHHHh---hh----HHHHHhhhhC-CEEEEechhhhcCChH
Confidence 35678999999999999999987421 1112345665422111 01 1222223322 268899996431 134
Q ss_pred HHH-HHHhhcC-CCCCCcEEEEecCCchH---------HhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 216 LAN-LRLLVTN-MDLVGFYVLVTTQSRSV---------ATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 216 ~~~-l~~~l~~-~~~~gs~IIvTTR~~~v---------a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
|.. +...+.. .. .|..||+||+...- ...+....++ .++++++++-..+++.++.
T Consensus 115 ~~~~Lf~l~n~~~~-~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~--~l~~~~~e~~~~il~~ka~ 180 (234)
T PRK05642 115 WEEALFHLFNRLRD-SGRRLLLAASKSPRELPIKLPDLKSRLTLALVF--QMRGLSDEDKLRALQLRAS 180 (234)
T ss_pred HHHHHHHHHHHHHh-cCCEEEEeCCCCHHHcCccCccHHHHHhcCeee--ecCCCCHHHHHHHHHHHHH
Confidence 543 3333321 12 46789998875442 1222234567 9999999999999997653
No 45
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.0001 Score=74.84 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~v 175 (331)
.++| -+..|.+++.. +.-...+-++|..|+||||+|+.+.+.-.... .|...+.+..
T Consensus 17 dIIGQe~vv~~L~~ai~~-~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 17 DLVGQEHVVKALQNALDE-GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 4668 45566666653 22245678899999999999998866321111 0111122221
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~~ 252 (331)
+....+ ++...+....... ..+++-++|+|++...+....+.|+..+.... ..+++|++|.+.. +... .+....|
T Consensus 96 As~~gV-d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-~~v~fILaTtd~~kL~~TIrSRC~~f 173 (709)
T PRK08691 96 ASNTGI-DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPHKVPVTVLSRCLQF 173 (709)
T ss_pred cccCCH-HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-CCcEEEEEeCCccccchHHHHHHhhh
Confidence 111111 1222222222111 23566789999998877667778887776544 4567766664433 3222 2333457
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
++.+++.++....+.+.+
T Consensus 174 --~f~~Ls~eeI~~~L~~Il 191 (709)
T PRK08691 174 --VLRNMTAQQVADHLAHVL 191 (709)
T ss_pred --hcCCCCHHHHHHHHHHHH
Confidence 889999998888777643
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.98 E-value=8.5e-05 Score=67.57 Aligned_cols=130 Identities=12% Similarity=0.055 Sum_probs=68.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
...-+.++|.+|+||||+|+.+++.-.-...-....++.++.. +.. .....+...+... . ..+|++|++..
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~-~l~~~~~g~~~~~~~~~~~~a-~--~~VL~IDE~~~ 116 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA-DLVGEYIGHTAQKTREVIKKA-L--GGVLFIDEAYS 116 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH-HhhhhhccchHHHHHHHHHhc-c--CCEEEEechhh
Confidence 3445678999999999999999763210010111122222211 000 1112222223222 2 34899999975
Q ss_pred CC--------HHhHHHHHHhhcCCCCCCcEEEEecCCchHHh-------hccCC-ccccccccCCChHHHHHHHhhhC
Q 020066 211 LN--------DDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT-------MMKQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 211 ~~--------~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~-------~~~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
-. .+..+.+...+.... ....+|+++...+... ..... ..+ .+++++.++-.+++.+.+
T Consensus 117 L~~~~~~~~~~~~i~~Ll~~~e~~~-~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i--~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 117 LARGGEKDFGKEAIDTLVKGMEDNR-NEFVLILAGYSDEMDYFLSLNPGLRSRFPISI--DFPDYTVEELMEIAERMV 191 (261)
T ss_pred hccCCccchHHHHHHHHHHHHhccC-CCEEEEecCCcchhHHHHhcChHHHhccceEE--EECCCCHHHHHHHHHHHH
Confidence 21 223445555554443 4445666665433211 11111 346 899999999999998765
No 47
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00025 Score=68.26 Aligned_cols=132 Identities=10% Similarity=-0.049 Sum_probs=78.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCC------------------CcCceEEEEeCCCCCccccHHHHHHHHHhc-cC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVS------------------RFPRHIWFSVGKILDLSTVMNVITIRCKEI-PS 197 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~-l~ 197 (331)
..-+-++|..|+|||++|+.+.+.-.... .++...++......-..+....+...+... ..
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~ 115 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPST 115 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCccc
Confidence 45577999999999999988754211110 011112221111000002223333333222 34
Q ss_pred CceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCccccccccCCChHHHHHHHhhh
Q 020066 198 SEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 198 ~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+++-++++|++...+....+.|+..+.... .++.+|++|.+.. +... .+....+ .+.+++.++....+...
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~-~~~~fIL~a~~~~~llpTIrSRc~~i--~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPP-PRTVWLLCAPSPEDVLPTIRSRCRHV--ALRTPSVEAVAEVLVRR 188 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCC-CCCeEEEEECChHHChHHHHhhCeEE--ECCCCCHHHHHHHHHHh
Confidence 556688899999887777777877776554 5676666666543 3322 2344577 89999999999888743
No 48
>PRK06620 hypothetical protein; Validated
Probab=97.93 E-value=3.6e-05 Score=67.94 Aligned_cols=109 Identities=13% Similarity=0.064 Sum_probs=66.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLA 217 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~ 217 (331)
+.+-|+|..|+|||+|++.+++.... .++. ..+. . . +.. ...-+|++||+..-+....-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~---~-----~---~~~-~~~d~lliDdi~~~~~~~lf 103 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF---N-----E---EIL-EKYNAFIIEDIENWQEPALL 103 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh---c-----h---hHH-hcCCEEEEeccccchHHHHH
Confidence 56889999999999999998875321 1111 0000 0 0 111 12357889999753222222
Q ss_pred HHHHhhcCCCCCCcEEEEecCCchH-------HhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 218 NLRLLVTNMDLVGFYVLVTTQSRSV-------ATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 218 ~l~~~l~~~~~~gs~IIvTTR~~~v-------a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+...+. . .|..||+|++...- ...+...-++ .++++++++-..++++.+
T Consensus 104 ~l~N~~~--e-~g~~ilits~~~p~~l~l~~L~SRl~~gl~~--~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 104 HIFNIIN--E-KQKYLLLTSSDKSRNFTLPDLSSRIKSVLSI--LLNSPDDELIKILIFKHF 160 (214)
T ss_pred HHHHHHH--h-cCCEEEEEcCCCccccchHHHHHHHhCCceE--eeCCCCHHHHHHHHHHHH
Confidence 3333332 2 56789999975442 2223344468 999999999888887765
No 49
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00015 Score=72.44 Aligned_cols=150 Identities=14% Similarity=0.110 Sum_probs=86.5
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFS 174 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 174 (331)
..++| -++.|.+++.. +.-...+-++|..|+||||+|+.+...-.... .|...+++.
T Consensus 16 ~divGq~~v~~~L~~~i~~-~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~ 94 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ-QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVD 94 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEee
Confidence 34668 44455566553 22234567899999999999998865322111 122223332
Q ss_pred eCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc-hHHhh-ccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR-SVATM-MKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~-~va~~-~~~~~~ 251 (331)
.+.... .++...+...+.. -..+++-++|+|++........+.++..+.... ..+.+|++|.+. .+... ...+..
T Consensus 95 ~~~~~~-vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-~~~~fIL~t~d~~kil~tI~SRc~~ 172 (527)
T PRK14969 95 AASNTQ-VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-EHVKFILATTDPQKIPVTVLSRCLQ 172 (527)
T ss_pred ccccCC-HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-CCEEEEEEeCChhhCchhHHHHHHH
Confidence 221111 1222233332222 234667799999999877777888888886654 566666655433 33322 222346
Q ss_pred ccccccCCChHHHHHHHhhh
Q 020066 252 EAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+ ++++++.++....+.+.
T Consensus 173 ~--~f~~l~~~~i~~~L~~i 190 (527)
T PRK14969 173 F--NLKQMPPPLIVSHLQHI 190 (527)
T ss_pred H--hcCCCCHHHHHHHHHHH
Confidence 7 89999988887766653
No 50
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=71.59 Aligned_cols=149 Identities=13% Similarity=0.089 Sum_probs=86.9
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFS 174 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~ 174 (331)
..++| -+..|.+++.. +.-...+-++|..|+||||+|+.+.+.-.... .|...+.+.
T Consensus 16 ~divGq~~v~~~L~~~~~~-~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid 94 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ-QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD 94 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh-CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc
Confidence 35678 55677777763 22234567899999999999988876332211 111122222
Q ss_pred eCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhh-ccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATM-MKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~-~~~~~~ 251 (331)
.+....+ ++...+...+.. -..++.-++|+|++...+...++.++..+.... ..+++|++|.+ ..+... ......
T Consensus 95 aas~~~v-~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp-~~~~fIlattd~~kl~~tI~SRc~~ 172 (509)
T PRK14958 95 AASRTKV-EDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPP-SHVKFILATTDHHKLPVTVLSRCLQ 172 (509)
T ss_pred ccccCCH-HHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccC-CCeEEEEEECChHhchHHHHHHhhh
Confidence 2211111 222233332221 234566789999999887778888888876654 56776665543 333322 223456
Q ss_pred ccccccCCChHHHHHHHhh
Q 020066 252 EAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~ 270 (331)
+ ++++++.++-...+.+
T Consensus 173 ~--~f~~l~~~~i~~~l~~ 189 (509)
T PRK14958 173 F--HLAQLPPLQIAAHCQH 189 (509)
T ss_pred h--hcCCCCHHHHHHHHHH
Confidence 7 8999998876655444
No 51
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.90 E-value=3e-05 Score=73.98 Aligned_cols=128 Identities=13% Similarity=0.023 Sum_probs=72.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHh-ccCCceeEEEEeCCCCC-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKE-IPSSEMLLIALDGLCDL- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~- 211 (331)
.+-+.++|.+|+|||+||+.+++.. ...| +.+....-.. .........+.+ .-...+.+|+||+++..
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~ 228 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIA 228 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC--CCCE-----EecchHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhc
Confidence 4458899999999999999998843 3333 2221110000 111111222222 22345789999998752
Q ss_pred ----------CH---HhHHHHHHhhcC--CCCCCcEEEEecCCchHHh-h-c--c-CCccccccccCCChHHHHHHHhhh
Q 020066 212 ----------ND---DNLANLRLLVTN--MDLVGFYVLVTTQSRSVAT-M-M--K-QTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 212 ----------~~---~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~-~-~--~-~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+. ..+..+...+.. .. .+.+||.||...+... . . + ....+ .+...+.++..++|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~~~ld~al~r~grfd~~i--~v~~P~~~~r~~Il~~~ 305 (364)
T TIGR01242 229 AKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRPDILDPALLRPGRFDRII--EVPLPDFEGRLEILKIH 305 (364)
T ss_pred cccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCChhhCChhhcCcccCceEE--EeCCcCHHHHHHHHHHH
Confidence 11 122333333322 22 4678888887544211 1 1 1 23457 89999999999999987
Q ss_pred CCC
Q 020066 272 LPP 274 (331)
Q Consensus 272 af~ 274 (331)
+.+
T Consensus 306 ~~~ 308 (364)
T TIGR01242 306 TRK 308 (364)
T ss_pred Hhc
Confidence 654
No 52
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.90 E-value=7.7e-05 Score=68.77 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=69.9
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
-+.++|.+|+|||++|+.+.....-........++.++.. +.. .........+.+. ..-+|+||++...
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~-~l~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~ 135 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRD-DLVGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYR 135 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHH-HHhHhhcccchHHHHHHHHHc---cCcEEEEechhhhcc
Confidence 3668999999999999776552211111111124433321 110 1111222222222 2368999998632
Q ss_pred -------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhcc-------C-CccccccccCCChHHHHHHHhhhC
Q 020066 212 -------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMK-------Q-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~-------~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
....++.|...+.... .+.+||.++..+..-.... . ...+ .+++++.+|-..++.+++
T Consensus 136 ~~~~~~~~~~~~~~Ll~~le~~~-~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i--~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 136 PDNERDYGQEAIEILLQVMENQR-DDLVVILAGYKDRMDSFFESNPGFSSRVAHHV--DFPDYSEAELLVIAGLML 208 (284)
T ss_pred CCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEE--EeCCcCHHHHHHHHHHHH
Confidence 1233455666665554 5667777776443222111 1 2346 899999999999998865
No 53
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.90 E-value=0.00019 Score=63.18 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=69.1
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCH
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLND 213 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~ 213 (331)
++.+.-+-.||.+|+||||||..+.+.. ...|. +++. ... .....+...+.. ++ ++-+|.+|.+..-+.
T Consensus 47 ~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~~---~~sg-~~i---~k~~dl~~il~~-l~-~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 47 GEALDHMLFYGPPGLGKTTLARIIANEL--GVNFK---ITSG-PAI---EKAGDLAAILTN-LK-EGDILFIDEIHRLNK 115 (233)
T ss_dssp TS---EEEEESSTTSSHHHHHHHHHHHC--T--EE---EEEC-CC-----SCHHHHHHHHT----TT-EEEECTCCC--H
T ss_pred CCCcceEEEECCCccchhHHHHHHHhcc--CCCeE---eccc-hhh---hhHHHHHHHHHh-cC-CCcEEEEechhhccH
Confidence 4567778899999999999999999853 33331 2221 111 122334443433 33 355888899998776
Q ss_pred HhHHHHHHhhcCCC-------CC-----------CcEEEEecCCchHHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 214 DNLANLRLLVTNMD-------LV-----------GFYVLVTTQSRSVATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 214 ~~~~~l~~~l~~~~-------~~-----------gs~IIvTTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
..-+.|..++-++. .+ -+-|=.|||...+...+.....+..+|+..+.+|-..+..+.+
T Consensus 116 ~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a 192 (233)
T PF05496_consen 116 AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA 192 (233)
T ss_dssp HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC
T ss_pred HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHH
Confidence 66667776654211 01 1234468886555444432222222799999999999998866
No 54
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.89 E-value=0.00031 Score=66.55 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=87.3
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC--------------------CCcCceEEEE
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV--------------------SRFPRHIWFS 174 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~ 174 (331)
.++| .++.+.+++.. +.-...+-++|..|+||||+|+.+...-... .+++. .++.
T Consensus 15 ~iig~~~~~~~l~~~~~~-~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~~ 92 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKN-GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEID 92 (355)
T ss_pred hccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEee
Confidence 4567 55666666653 2334567789999999999998886532111 12222 2222
Q ss_pred eCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~ 251 (331)
.+.... ..+...+...+... ..+++-++|+|++........+.+...+.... ..+.+|++|.+.. +... ......
T Consensus 93 ~~~~~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~-~~~~lIl~~~~~~~l~~~l~sr~~~ 170 (355)
T TIGR02397 93 AASNNG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPP-EHVVFILATTEPHKIPATILSRCQR 170 (355)
T ss_pred ccccCC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCc-cceeEEEEeCCHHHHHHHHHhheeE
Confidence 211111 01233344433322 34556689999997765667788888876544 5667777765444 2222 223346
Q ss_pred ccccccCCChHHHHHHHhhhC
Q 020066 252 EAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ ++.++++++....+...+
T Consensus 171 ~--~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 171 F--DFKRIPLEDIVERLKKIL 189 (355)
T ss_pred E--EcCCCCHHHHHHHHHHHH
Confidence 6 888999988887777644
No 55
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00019 Score=70.22 Aligned_cols=149 Identities=11% Similarity=0.016 Sum_probs=87.1
Q ss_pred CCCC---cHHHHHHHHhcCCCCc-EEEEEEecCCchhHHHHHHHhhccccCCC--c----Cc-------------eEEEE
Q 020066 118 ELEG---SVDSVKNALLRDGSTV-RFIHIVGVSGTEVTHIAHRVFMDDDIVSR--F----PR-------------HIWFS 174 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F----~~-------------~~wv~ 174 (331)
.++| -...|..++.. +.+ ..+-++|..|+||||+|+.+.+.-..... + .| .+.+.
T Consensus 19 dvVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEId 96 (484)
T PRK14956 19 DVIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEID 96 (484)
T ss_pred HHhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeec
Confidence 4567 34456666653 333 45779999999999999999764322110 0 00 00011
Q ss_pred eCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE-EecCCchHHhh-ccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL-VTTQSRSVATM-MKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II-vTTR~~~va~~-~~~~~~ 251 (331)
...... .++...+...+... ..++.-++|+|++...+...++.|+..+-... ....+| .||....+... ...+..
T Consensus 97 aas~~g-Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 97 AASNRG-IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-AHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred hhhccc-HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-CceEEEeecCChhhccHHHHhhhhe
Confidence 000000 02223333333322 34566799999999888888999988875543 445544 44444444332 234456
Q ss_pred ccccccCCChHHHHHHHhhhC
Q 020066 252 EAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~a 272 (331)
| .+.+++.++....+.+.+
T Consensus 175 ~--~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 175 F--IFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred e--eecCCCHHHHHHHHHHHH
Confidence 8 999999988888777654
No 56
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.88 E-value=0.00026 Score=66.03 Aligned_cols=138 Identities=11% Similarity=0.118 Sum_probs=77.0
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHh
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKE 194 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~ 194 (331)
.++| ..+.+..++.. +.-..++-++|..|+||||+|+.+++.. ... ...++.+. .. .+.+...+..
T Consensus 22 ~~~~~~~~~~~l~~~~~~-~~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~----~~~i~~~l~~ 90 (316)
T PHA02544 22 ECILPAADKETFKSIVKK-GRIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR----IDFVRNRLTR 90 (316)
T ss_pred HhcCcHHHHHHHHHHHhc-CCCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc----HHHHHHHHHH
Confidence 4567 55566666653 3335677779999999999999998742 111 22333332 11 1222121211
Q ss_pred ---c--cCCceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHh-hccCCccccccccCCChHHHHH
Q 020066 195 ---I--PSSEMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VAT-MMKQTVPEAEHLIYFSESNSWS 266 (331)
Q Consensus 195 ---~--l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~-~~~~~~~~~~~l~~L~~~~s~~ 266 (331)
. +.+.+-+||+|++... .....+.+...+.... .++++|+||.... +.. ..+....+ .++..+.++...
T Consensus 91 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~-~~~~~Ilt~n~~~~l~~~l~sR~~~i--~~~~p~~~~~~~ 167 (316)
T PHA02544 91 FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS-KNCSFIITANNKNGIIEPLRSRCRVI--DFGVPTKEEQIE 167 (316)
T ss_pred HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC-CCceEEEEcCChhhchHHHHhhceEE--EeCCCCHHHHHH
Confidence 1 2244668999999765 2233344444444444 6778998886543 111 11223355 677777777665
Q ss_pred HHh
Q 020066 267 NLN 269 (331)
Q Consensus 267 Lf~ 269 (331)
++.
T Consensus 168 il~ 170 (316)
T PHA02544 168 MMK 170 (316)
T ss_pred HHH
Confidence 544
No 57
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00023 Score=74.35 Aligned_cols=147 Identities=13% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC----------------------cCceEE
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----------------------FPRHIW 172 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----------------------F~~~~w 172 (331)
.++| -++.|.+.+.. +.-...+-++|..|+||||+|+.+.+.-.+.+. ++ +++
T Consensus 16 eiiGqe~v~~~L~~~i~~-~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v~e 93 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDS-GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-VTE 93 (824)
T ss_pred HhcCcHHHHHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-EEE
Confidence 4668 45556666653 222345778999999999999988654322111 11 122
Q ss_pred EEeCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhhc-cCC
Q 020066 173 FSVGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATMM-KQT 249 (331)
Q Consensus 173 v~vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~~-~~~ 249 (331)
+.-..... .++...+...+.. -..++.-++|||++.......++.|+..+..-. ..+.+|++| ....+...+ ..+
T Consensus 94 idaas~~~-Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP-~~~~fIl~tt~~~kLl~TIrSRc 171 (824)
T PRK07764 94 IDAASHGG-VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP-EHLKFIFATTEPDKVIGTIRSRT 171 (824)
T ss_pred ecccccCC-HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhHHHHhhe
Confidence 21111111 1222333332222 244566688999999988888999998887655 566666555 433444332 345
Q ss_pred ccccccccCCChHHHHHHHhh
Q 020066 250 VPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
..| .+..++.++....+.+
T Consensus 172 ~~v--~F~~l~~~~l~~~L~~ 190 (824)
T PRK07764 172 HHY--PFRLVPPEVMRGYLER 190 (824)
T ss_pred eEE--EeeCCCHHHHHHHHHH
Confidence 577 8999988887766665
No 58
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.86 E-value=0.00014 Score=70.32 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=63.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccc--------------cHHH
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLST--------------VMNV 187 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--------------~~~~ 187 (331)
..+.+...|.. .+.+.++|++|+|||++|+.+++.......|+.+.||++++.++..+ ....
T Consensus 183 ~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~ 258 (459)
T PRK11331 183 TIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGI 258 (459)
T ss_pred HHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCch
Confidence 66677777763 24567799999999999999988654455677888999988765440 0011
Q ss_pred HHHHHHhcc--CCceeEEEEeCCCCCCHHh-HHHHHHhh
Q 020066 188 ITIRCKEIP--SSEMLLIALDGLCDLNDDN-LANLRLLV 223 (331)
Q Consensus 188 l~~~l~~~l--~~kr~LlVLDdvw~~~~~~-~~~l~~~l 223 (331)
..+.+.... .+++++||+|++...+.+. +..+...+
T Consensus 259 f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lL 297 (459)
T PRK11331 259 FYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLM 297 (459)
T ss_pred HHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhc
Confidence 112222222 2468999999998766433 44444433
No 59
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00023 Score=68.73 Aligned_cols=152 Identities=7% Similarity=-0.008 Sum_probs=85.0
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceE----------------------
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHI---------------------- 171 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~---------------------- 171 (331)
..++| -++.|.+++.. +.-...+-++|..|+||||+|..+.+.-.....++...
T Consensus 16 ~eiiGq~~~~~~L~~~~~~-~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~ 94 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM-GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGT 94 (397)
T ss_pred hhccChHHHHHHHHHHHHh-CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCC
Confidence 35668 34445555542 22234577899999999999988765432211110000
Q ss_pred ---EEEeCCCCCc-cccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhh
Q 020066 172 ---WFSVGKILDL-STVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATM 245 (331)
Q Consensus 172 ---wv~vs~~~~~-~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~ 245 (331)
++.+...... .++...+...+... ..+++-++|+|++.......++.+...+.... +.+.+|++| +...+...
T Consensus 95 ~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~-~~t~~Il~t~~~~kl~~t 173 (397)
T PRK14955 95 SLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPP-PHAIFIFATTELHKIPAT 173 (397)
T ss_pred CCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHHhHHH
Confidence 0111110000 11222222333211 33556689999998877678888888887655 566766555 43444332
Q ss_pred cc-CCccccccccCCChHHHHHHHhhhC
Q 020066 246 MK-QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 246 ~~-~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+. ....+ ++.+++.++....+...+
T Consensus 174 l~sR~~~v--~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 174 IASRCQRF--NFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred HHHHHHHh--hcCCCCHHHHHHHHHHHH
Confidence 22 23467 899999988877776643
No 60
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=0.00048 Score=65.67 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=90.2
Q ss_pred CCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC---------------------------
Q 020066 116 ETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS--------------------------- 165 (331)
Q Consensus 116 ~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------------- 165 (331)
...++| -...|.+.+.. +.-...+-++|..|+||+|+|..+.+.--...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~-~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRS-GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhhccChHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 345678 33445555553 23344677999999999999976644211111
Q ss_pred --CcCceEEEEeC--CCC---CccccHHHHHH---HHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE
Q 020066 166 --RFPRHIWFSVG--KIL---DLSTVMNVITI---RCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL 234 (331)
Q Consensus 166 --~F~~~~wv~vs--~~~---~~~~~~~~l~~---~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II 234 (331)
......|+.-. ... ......+++.. .+... ..+++-++|+|++...+....+.|+..+.... .++.+|
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-~~~~~I 175 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-ARSLFL 175 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-CCeEEE
Confidence 01111222210 000 00012333322 22211 23567799999999888888888888876554 567777
Q ss_pred EecCCch-HHhh-ccCCccccccccCCChHHHHHHHhhhC
Q 020066 235 VTTQSRS-VATM-MKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 235 vTTR~~~-va~~-~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
++|.+.+ +... ......+ .+.+++.++..+++....
T Consensus 176 L~t~~~~~llpti~SRc~~i--~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 176 LVSHAPARLLPTIRSRCRKL--RLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEECCchhchHHhhccceEE--ECCCCCHHHHHHHHHHhc
Confidence 7777654 3222 2344577 999999999999998764
No 61
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.84 E-value=0.00029 Score=70.72 Aligned_cols=150 Identities=11% Similarity=0.039 Sum_probs=86.3
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc-------------------CceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF-------------------PRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~wv~v 175 (331)
.++| -.+.+.+.+.. +.-.+.+-++|..|+||||+|+.+.+.-...... ...+++..
T Consensus 17 dIIGQe~iv~~L~~aI~~-~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIda 95 (605)
T PRK05896 17 QIIGQELIKKILVNAILN-NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDA 95 (605)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecc
Confidence 4567 44555555543 2334567789999999999999886532211100 11222321
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHh-hccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVAT-MMKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~-~~~~~~~~ 252 (331)
+..... ++...+...+... ..+++-++|+|++.......++.|+..+.... ..+.+|++| ....+.. ....+..+
T Consensus 96 as~igV-d~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-~~tvfIL~Tt~~~KLl~TI~SRcq~i 173 (605)
T PRK05896 96 ASNNGV-DEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-KHVVFIFATTEFQKIPLTIISRCQRY 173 (605)
T ss_pred ccccCH-HHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-CcEEEEEECCChHhhhHHHHhhhhhc
Confidence 111111 2233333333322 23344579999998877778888888776544 456665555 4333432 23344577
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
++.+++.++....+...+
T Consensus 174 --eF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 174 --NFKKLNNSELQELLKSIA 191 (605)
T ss_pred --ccCCCCHHHHHHHHHHHH
Confidence 999999999887777643
No 62
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.84 E-value=5.8e-05 Score=66.88 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=70.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccH-HHHHHHHHhccCCceeEEEEeCCCCCCH
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVM-NVITIRCKEIPSSEMLLIALDGLCDLND 213 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVLDdvw~~~~ 213 (331)
....+-|+|..|+|||.|.+.+++...-...=..++|++...-.... ... +.-...+.+.+.+ -=+|+|||++....
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS-ADLLIIDDIQFLAG 111 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT-SSEEEEETGGGGTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhc-CCEEEEecchhhcC
Confidence 34567899999999999999999853211111124455321110000 000 0001123333332 34789999976422
Q ss_pred -HhHHH----HHHhhcCCCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 214 -DNLAN----LRLLVTNMDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 214 -~~~~~----l~~~l~~~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
..|.. +...+. . .|.+||+|++... +...+...-++ ++++++.++-..++.+++-
T Consensus 112 ~~~~q~~lf~l~n~~~--~-~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~--~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 KQRTQEELFHLFNRLI--E-SGKQLILTSDRPPSELSGLLPDLRSRLSWGLVV--ELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp HHHHHHHHHHHHHHHH--H-TTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEE--EE----HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH--h-hCCeEEEEeCCCCccccccChhhhhhHhhcchh--hcCCCCHHHHHHHHHHHHH
Confidence 23333 333332 2 4568999996442 22233345568 9999999999999998773
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00038 Score=68.60 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=88.5
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC-------------------CCcCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV-------------------SRFPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~v 175 (331)
.++| -.+.|.+.+.. +.-..-+-++|..|+||||+|+.+...-... ..+..++.+..
T Consensus 14 dliGQe~vv~~L~~a~~~-~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eida 92 (491)
T PRK14964 14 DLVGQDVLVRILRNAFTL-NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDA 92 (491)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEec
Confidence 4567 33344444432 2223467799999999999998886421100 01112233333
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhhc-cCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATMM-KQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~~-~~~~~~ 252 (331)
+....+ ++...+....... ..+++-++|+|++.......++.|+..+.... +.+++|++| ..+.+...+ .....+
T Consensus 93 as~~~v-ddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp-~~v~fIlatte~~Kl~~tI~SRc~~~ 170 (491)
T PRK14964 93 ASNTSV-DDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA-PHVKFILATTEVKKIPVTIISRCQRF 170 (491)
T ss_pred ccCCCH-HHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC-CCeEEEEEeCChHHHHHHHHHhheee
Confidence 222211 2333333333222 34566789999998877777888888887655 667666555 444454333 344567
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+++++.++....+.+.+
T Consensus 171 --~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 171 --DLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred --ecccccHHHHHHHHHHHH
Confidence 899999998888877754
No 64
>CHL00181 cbbX CbbX; Provisional
Probab=97.78 E-value=0.00023 Score=65.68 Aligned_cols=127 Identities=12% Similarity=0.052 Sum_probs=70.5
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
.+.++|.+|+||||+|+.+++.......-...-|+.++.. +.. .........+.+. . .-+|+||++...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~-~l~~~~~g~~~~~~~~~l~~a-~--ggVLfIDE~~~l~~ 136 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD-DLVGQYIGHTAPKTKEVLKKA-M--GGVLFIDEAYYLYK 136 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH-HHHHHHhccchHHHHHHHHHc-c--CCEEEEEccchhcc
Confidence 3668999999999999999763211111111124443321 110 1111112222222 2 349999998642
Q ss_pred -------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhc-------c-CCccccccccCCChHHHHHHHhhhC
Q 020066 212 -------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMM-------K-QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~-------~-~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
..+.-+.|...+.... .+.+||.++....+.... + ....+ .+++++.++..+++...+
T Consensus 137 ~~~~~~~~~e~~~~L~~~me~~~-~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i--~F~~~t~~el~~I~~~~l 209 (287)
T CHL00181 137 PDNERDYGSEAIEILLQVMENQR-DDLVVIFAGYKDRMDKFYESNPGLSSRIANHV--DFPDYTPEELLQIAKIML 209 (287)
T ss_pred CCCccchHHHHHHHHHHHHhcCC-CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceE--EcCCcCHHHHHHHHHHHH
Confidence 1223344555555554 567788887654442211 1 12356 899999999999988875
No 65
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00048 Score=69.47 Aligned_cols=150 Identities=11% Similarity=0.009 Sum_probs=86.8
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc-------------------CceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF-------------------PRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~wv~v 175 (331)
.++| -+..|.+.+.. +.-...+-++|..|+||||+|+.+.+.-...... ...+++..
T Consensus 17 dIiGQe~v~~~L~~ai~~-~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~ 95 (624)
T PRK14959 17 EVAGQETVKAILSRAAQE-NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG 95 (624)
T ss_pred HhcCCHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec
Confidence 4567 33344444432 2234667789999999999999887643221100 01222221
Q ss_pred CCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhh-ccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATM-MKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~-~~~~~~~ 252 (331)
+....+ +....+...+.. -..+++-++|+|++.......++.|+..+.... ....+|++|.+ ..+... ......+
T Consensus 96 a~~~~I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-~~~ifILaTt~~~kll~TI~SRcq~i 173 (624)
T PRK14959 96 ASNRGI-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPP-ARVTFVLATTEPHKFPVTIVSRCQHF 173 (624)
T ss_pred ccccCH-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccC-CCEEEEEecCChhhhhHHHHhhhhcc
Confidence 111111 222333333322 134567799999998877777888888876443 45566665544 444432 2334577
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
++++++.++....+...+
T Consensus 174 --~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 174 --TFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred --ccCCCCHHHHHHHHHHHH
Confidence 899999999888877644
No 66
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.76 E-value=6.7e-05 Score=71.54 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=49.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC--CCcc-------------------ccH----HHHHHHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI--LDLS-------------------TVM----NVITIRC 192 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~-------------------~~~----~~l~~~l 192 (331)
..++|+|.+|+|||||++.+++..... +|+..+|+.+++. .++. ... +.+....
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 468899999999999999999964333 7999999998855 3322 000 1111111
Q ss_pred Hh-ccCCceeEEEEeCCCC
Q 020066 193 KE-IPSSEMLLIALDGLCD 210 (331)
Q Consensus 193 ~~-~l~~kr~LlVLDdvw~ 210 (331)
.. .-.+++.+|++|.+..
T Consensus 248 e~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 248 KRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHcCCCeEEEEEChhH
Confidence 11 2468999999999865
No 67
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00045 Score=66.68 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=76.1
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHHH
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLAN 218 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~ 218 (331)
++.|.|+.++|||||++.+... ..+. .++++............+....+.+.-..++.+|+||.|... ..|..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v--~~W~~ 111 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNV--PDWER 111 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCc--hhHHH
Confidence 9999999999999999766552 1111 555544333322222222222222222227889999999985 45888
Q ss_pred HHHhhcCCCCCCcEEEEecCCchHHh-----h-ccCCccccccccCCChHHHHH
Q 020066 219 LRLLVTNMDLVGFYVLVTTQSRSVAT-----M-MKQTVPEAEHLIYFSESNSWS 266 (331)
Q Consensus 219 l~~~l~~~~~~gs~IIvTTR~~~va~-----~-~~~~~~~~~~l~~L~~~~s~~ 266 (331)
....+.+.. +. +|++|+-+..... . .|....+ .+.|||..|...
T Consensus 112 ~lk~l~d~~-~~-~v~itgsss~ll~~~~~~~L~GR~~~~--~l~PlSF~Efl~ 161 (398)
T COG1373 112 ALKYLYDRG-NL-DVLITGSSSSLLSKEISESLAGRGKDL--ELYPLSFREFLK 161 (398)
T ss_pred HHHHHHccc-cc-eEEEECCchhhhccchhhhcCCCceeE--EECCCCHHHHHh
Confidence 888877665 55 8999888766432 1 2344567 899999999875
No 68
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.75 E-value=0.0002 Score=64.00 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=28.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV 175 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 175 (331)
-.++|+|..|+|||||...+..+ ....|+++.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 35779999999999999888764 5667877776644
No 69
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00065 Score=64.85 Aligned_cols=150 Identities=9% Similarity=0.087 Sum_probs=83.4
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc------CCCcCceEEEEeCCCCCc-cccHHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI------VSRFPRHIWFSVGKILDL-STVMNV 187 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~~~F~~~~wv~vs~~~~~-~~~~~~ 187 (331)
.++| -.+.+.+.+.. +.-.+.+-++|..|+||||+|+.+.+.-.. ...|...+ +.+...... ......
T Consensus 18 ~iig~~~~~~~l~~~i~~-~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~i~~ 95 (367)
T PRK14970 18 DVVGQSHITNTLLNAIEN-NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSVDDIRN 95 (367)
T ss_pred hcCCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCHHHHHH
Confidence 4567 44455555542 233457889999999999999988664211 11122111 112111110 012222
Q ss_pred HHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHh-hccCCccccccccCCChHHH
Q 020066 188 ITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVAT-MMKQTVPEAEHLIYFSESNS 264 (331)
Q Consensus 188 l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~-~~~~~~~~~~~l~~L~~~~s 264 (331)
+...+.. ...+++-++++|++.......++.+...+.... ..+.+|++| ..+.+.. .......+ +++++++++.
T Consensus 96 l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~-~~~~~Il~~~~~~kl~~~l~sr~~~v--~~~~~~~~~l 172 (367)
T PRK14970 96 LIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPP-AHAIFILATTEKHKIIPTILSRCQIF--DFKRITIKDI 172 (367)
T ss_pred HHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCC-CceEEEEEeCCcccCCHHHHhcceeE--ecCCccHHHH
Confidence 2222211 133456689999997765566777777665444 455666555 3333322 22234467 8999999988
Q ss_pred HHHHhhhC
Q 020066 265 WSNLNCEL 272 (331)
Q Consensus 265 ~~Lf~~~a 272 (331)
...+...+
T Consensus 173 ~~~l~~~~ 180 (367)
T PRK14970 173 KEHLAGIA 180 (367)
T ss_pred HHHHHHHH
Confidence 88777654
No 70
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.0009 Score=63.48 Aligned_cols=154 Identities=10% Similarity=0.061 Sum_probs=87.7
Q ss_pred CCCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC-------CCc-----Cc----------
Q 020066 115 AETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV-------SRF-----PR---------- 169 (331)
Q Consensus 115 ~~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~~F-----~~---------- 169 (331)
....++| -...+...+.. +.-...+-|+|..|+||||||..+.+.-... ..+ .|
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~-grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~ 99 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE-GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGA 99 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc-CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCC
Confidence 3445678 33444444442 3334568899999999999998776532110 000 11
Q ss_pred ---eEEEEeCC-C----CCccccHHHHH---HHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec
Q 020066 170 ---HIWFSVGK-I----LDLSTVMNVIT---IRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT 237 (331)
Q Consensus 170 ---~~wv~vs~-~----~~~~~~~~~l~---~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT 237 (331)
..++..+. . +......+++. ..+.. ...+++-++|+|++...+....+.|+..+.... .++.+|++|
T Consensus 100 hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp-~~~~fiLit 178 (351)
T PRK09112 100 HPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP-ARALFILIS 178 (351)
T ss_pred CCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-CCceEEEEE
Confidence 11121110 0 00011123332 22222 124567799999999988888888888776544 455555444
Q ss_pred CCc-hHHhhc-cCCccccccccCCChHHHHHHHhhhC
Q 020066 238 QSR-SVATMM-KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 238 R~~-~va~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... .+...+ +....+ ++.+++.++...++.+..
T Consensus 179 ~~~~~llptIrSRc~~i--~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 179 HSSGRLLPTIRSRCQPI--SLKPLDDDELKKALSHLG 213 (351)
T ss_pred CChhhccHHHHhhccEE--EecCCCHHHHHHHHHHhh
Confidence 433 332222 234567 999999999999998843
No 71
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00076 Score=63.42 Aligned_cols=134 Identities=10% Similarity=0.032 Sum_probs=82.9
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEEeCCC-CCcc-ccHHHHHHHHH
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFSVGKI-LDLS-TVMNVITIRCK 193 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~-~~~~-~~~~~l~~~l~ 193 (331)
.-..-+-+.|..|+||||+|+.+...--..+ ..+...|+.-... .... +...++...+.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~ 99 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVV 99 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHh
Confidence 3345677899999999999987755322211 1112233322111 0111 23333444333
Q ss_pred hc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHHHHHhh
Q 020066 194 EI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 194 ~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
.. ..+++-++|+|++...+.+..+.++..+-.-. .++.+|+||.+.+ +. +..+....+ .+.+++.++..+.+..
T Consensus 100 ~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp-~~~~fiL~t~~~~~ll~TI~SRc~~~--~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 100 QTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPS-GDTVLLLISHQPSRLLPTIKSRCQQQ--ACPLPSNEESLQWLQQ 176 (328)
T ss_pred hccccCCCeEEEECChhhCCHHHHHHHHHHHhCCC-CCeEEEEEECChhhCcHHHHhhceee--eCCCcCHHHHHHHHHH
Confidence 32 23444455779999988888999988886655 6778888877665 33 333445678 9999999999988876
Q ss_pred h
Q 020066 271 E 271 (331)
Q Consensus 271 ~ 271 (331)
.
T Consensus 177 ~ 177 (328)
T PRK05707 177 A 177 (328)
T ss_pred h
Confidence 5
No 72
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00099 Score=67.15 Aligned_cols=149 Identities=12% Similarity=0.014 Sum_probs=87.7
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc---------------------CceEEE
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF---------------------PRHIWF 173 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------------------~~~~wv 173 (331)
.++| -.+.|.+++.. +.-...+-++|..|+||||+|+.+.+.-...... ..++.+
T Consensus 14 eivGq~~i~~~L~~~i~~-~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 14 EVVGQEHVTEPLSSALDA-GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 4667 44556666653 2334456789999999999999887532211100 011122
Q ss_pred EeCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE-ecCCchHHhh-ccCCc
Q 020066 174 SVGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV-TTQSRSVATM-MKQTV 250 (331)
Q Consensus 174 ~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv-TTR~~~va~~-~~~~~ 250 (331)
..+... ..++..++...+... ..+++-++|+|++........+.|+..+.... ..+.+|+ ||..+.+... .....
T Consensus 93 daas~~-gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp-~~~~fIL~tte~~kll~TI~SRc~ 170 (584)
T PRK14952 93 DAASHG-GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP-EHLIFIFATTEPEKVLPTIRSRTH 170 (584)
T ss_pred cccccc-CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC-CCeEEEEEeCChHhhHHHHHHhce
Confidence 111110 112333343333322 23556689999999888888888888887654 5566554 4444444432 23345
Q ss_pred cccccccCCChHHHHHHHhhh
Q 020066 251 PEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
.| ++.+++.++..+.+.+.
T Consensus 171 ~~--~F~~l~~~~i~~~L~~i 189 (584)
T PRK14952 171 HY--PFRLLPPRTMRALIARI 189 (584)
T ss_pred EE--EeeCCCHHHHHHHHHHH
Confidence 67 89999998887777653
No 73
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00011 Score=71.96 Aligned_cols=130 Identities=8% Similarity=0.065 Sum_probs=69.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHH-HHHHHHHhccCCceeEEEEeCCCCCCHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMN-VITIRCKEIPSSEMLLIALDGLCDLNDD 214 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~-~l~~~l~~~l~~kr~LlVLDdvw~~~~~ 214 (331)
..-+.|+|..|+|||+|++.+.+.... .-..+++++...-.+.. .... .-...++..+. ..-+|++||+......
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k 217 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGK 217 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCC
Confidence 356789999999999999999985321 11233454321100000 0000 00112222222 3458899998653211
Q ss_pred h--HHHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 215 N--LANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 215 ~--~~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
. .+.+...|.. .. .|..||+||.... +...+...-++ .+++++.++-..++.+++
T Consensus 218 ~~~qeelf~l~N~l~~-~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~--~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 218 GATQEEFFHTFNSLHT-EGKLIVISSTCAPQDLKAMEERLISRFEWGIAI--PLHPLTKEGLRSFLERKA 284 (445)
T ss_pred hhhHHHHHHHHHHHHH-CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEE--ecCCCCHHHHHHHHHHHH
Confidence 1 1222222211 12 3557888886531 12223334567 899999999999999876
No 74
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.67 E-value=0.0005 Score=70.36 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=90.0
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-------------------
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS------------------- 182 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~------------------- 182 (331)
.+.+|.+.|.. ..+.+++-|..++|.|||||+-..... . ..=..+.|.+.+.+-+..
T Consensus 23 ~R~rL~~~L~~-~~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~ 98 (894)
T COG2909 23 VRPRLLDRLRR-ANDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLG 98 (894)
T ss_pred ccHHHHHHHhc-CCCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHHHHHHHHHhCcccc
Confidence 77889998885 457899999999999999999887641 1 112357899988776543
Q ss_pred ------------ccHHHHHHHHHhccC--CceeEEEEeCCCCCCHHhHHH-HHHhhcCCCCCCcEEEEecCCchH---Hh
Q 020066 183 ------------TVMNVITIRCKEIPS--SEMLLIALDGLCDLNDDNLAN-LRLLVTNMDLVGFYVLVTTQSRSV---AT 244 (331)
Q Consensus 183 ------------~~~~~l~~~l~~~l~--~kr~LlVLDdvw~~~~~~~~~-l~~~l~~~~~~gs~IIvTTR~~~v---a~ 244 (331)
.+...+...+...+. .+++++||||..-........ +..-+.... .|-.+|+|||+..- ++
T Consensus 99 ~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P-~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 99 DEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP-ENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC-CCeEEEEEeccCCCCcccc
Confidence 223334444444332 358999999976543222222 222223333 67799999998752 21
Q ss_pred hccCCccc--cccccCCChHHHHHHHhhhC
Q 020066 245 MMKQTVPE--AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 245 ~~~~~~~~--~~~l~~L~~~~s~~Lf~~~a 272 (331)
.--....+ -.+.=-++.+|+-.+|....
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 11011111 00122357889999888765
No 75
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.00077 Score=68.24 Aligned_cols=150 Identities=14% Similarity=0.070 Sum_probs=87.0
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc-------C-----------------ce
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF-------P-----------------RH 170 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------~-----------------~~ 170 (331)
.++| -++.|.+.+.. +.-..-+-++|..|+||||+|+.+.+.-...... + ..
T Consensus 25 dliGq~~~v~~L~~~~~~-gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv 103 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFET-GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDV 103 (598)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCce
Confidence 4567 44556665553 2334467789999999999999987642221110 0 01
Q ss_pred EEEEeCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhhc-c
Q 020066 171 IWFSVGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATMM-K 247 (331)
Q Consensus 171 ~wv~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~~-~ 247 (331)
+++....... .++..++...+... ..+++-++|+|++...+....+.|+..+..-. .++++|++| ....+...+ .
T Consensus 104 ~e~~a~s~~g-vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp-~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 104 LEMDAASHTG-VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred EEecccccCC-HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCC-CCeEEEEEeCChhhhhHHHHh
Confidence 1221111110 02223333333221 33456679999998877777888888876554 566765544 444443332 2
Q ss_pred CCccccccccCCChHHHHHHHhhhC
Q 020066 248 QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 248 ~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+..+ .+.+++.++....+.+.+
T Consensus 182 Rcq~~--~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 182 RCQRF--DLRRIEADVLAAHLSRIA 204 (598)
T ss_pred heeEE--EecCCCHHHHHHHHHHHH
Confidence 34567 899999988887777643
No 76
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.67 E-value=0.00014 Score=64.56 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=65.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDN 215 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~ 215 (331)
....+.|+|..|+|||+||+.+++... ...+ ...+++.... ...+ ... ...-+||+||+...+...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~----------~~~~-~~~-~~~~~liiDdi~~l~~~~ 106 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASP----------LLAF-DFD-PEAELYAVDDVERLDDAQ 106 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHh----------HHHH-hhc-ccCCEEEEeChhhcCchH
Confidence 345678999999999999999988531 1111 2233332211 1111 112 234479999997543322
Q ss_pred HHHHHHhhcC-CCCCCc-EEEEecCCchHHh--------hccCCccccccccCCChHHHHHHHhh
Q 020066 216 LANLRLLVTN-MDLVGF-YVLVTTQSRSVAT--------MMKQTVPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 216 ~~~l~~~l~~-~~~~gs-~IIvTTR~~~va~--------~~~~~~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
-..+...+.. .. .|. .||+|++...... .+.....+ .+.+|++++-..++.+
T Consensus 107 ~~~L~~~~~~~~~-~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i--~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 107 QIALFNLFNRVRA-HGQGALLVAGPAAPLALPLREDLRTRLGWGLVY--ELKPLSDADKIAALKA 168 (227)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEE--EecCCCHHHHHHHHHH
Confidence 2334343322 11 333 4677776543222 22223456 8999999877676665
No 77
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.66 E-value=0.00097 Score=67.70 Aligned_cols=148 Identities=7% Similarity=0.015 Sum_probs=83.9
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC----------------------------C
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS----------------------------R 166 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------------------~ 166 (331)
.++| -+..|.+.+.. +.-...+-++|..|+||||+|+.+.+.-.... +
T Consensus 17 eivGQe~i~~~L~~~i~~-~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 17 DITAQEHITHTIQNSLRM-DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 4668 34445555542 22334577899999999999988765332211 1
Q ss_pred cCceEEEEeCCCCCccccHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHh
Q 020066 167 FPRHIWFSVGKILDLSTVMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVAT 244 (331)
Q Consensus 167 F~~~~wv~vs~~~~~~~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~ 244 (331)
|+...+ ..... ...++...+...+.. -..+++-++|+|++........+.|+..+.... ..+.+|++| +...+..
T Consensus 96 ~n~~~~-d~~s~-~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 96 LNISEF-DAASN-NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-PHAIFIFATTELHKIPA 172 (620)
T ss_pred CCeEEe-ccccc-CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-CCeEEEEEeCChhhhhH
Confidence 221111 00000 001222233333321 134556678999998877777888888887654 456655544 4444433
Q ss_pred h-ccCCccccccccCCChHHHHHHHhhh
Q 020066 245 M-MKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 245 ~-~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
. ......+ ++.+++.++....+.+.
T Consensus 173 TI~SRc~~v--ef~~l~~~ei~~~L~~i 198 (620)
T PRK14954 173 TIASRCQRF--NFKRIPLDEIQSQLQMI 198 (620)
T ss_pred HHHhhceEE--ecCCCCHHHHHHHHHHH
Confidence 2 2345578 89999998877766653
No 78
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00014 Score=72.97 Aligned_cols=131 Identities=11% Similarity=0.027 Sum_probs=72.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccH-HHHHHHHHhccCCceeEEEEeCCCCCCH-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVM-NVITIRCKEIPSSEMLLIALDGLCDLND- 213 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVLDdvw~~~~- 213 (331)
...+.|+|-.|+|||.|++.+++.......--.++|++...-.+.. ... +.....+.+.+.. -=+|+|||+.....
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~-~DLLlIDDIq~l~gk 392 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYRE-MDILLVDDIQFLEDK 392 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhc-CCEEEEehhccccCC
Confidence 3458899999999999999999853211111233455432111000 000 0001112222221 24899999976421
Q ss_pred HhHH----HHHHhhcCCCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 214 DNLA----NLRLLVTNMDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 214 ~~~~----~l~~~l~~~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
..|. .+...+. . .|..||+||+..- +...+...-++ .|++.+.+.-..++.+++-
T Consensus 393 e~tqeeLF~l~N~l~--e-~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv--~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 393 ESTQEEFFHTFNTLH--N-ANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLIT--DVQPPELETRIAILRKKAV 460 (617)
T ss_pred HHHHHHHHHHHHHHH--h-cCCCEEEecCCChHhhhhccHHHHhhhhcCceE--EcCCCCHHHHHHHHHHHHH
Confidence 2232 2333332 2 4567889887531 23334445567 9999999999999998764
No 79
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.64 E-value=0.00015 Score=71.03 Aligned_cols=132 Identities=10% Similarity=0.056 Sum_probs=71.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHH---HHHHHHHhccCCceeEEEEeCCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMN---VITIRCKEIPSSEMLLIALDGLCDLN 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~---~l~~~l~~~l~~kr~LlVLDdvw~~~ 212 (331)
..-+.|+|..|+|||+|++.+.+.-.....-..+++++...-.... .... .....+.+.+. ..-+|||||+....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~-~~dvLiIDDiq~l~ 219 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC-QNDVLIIDDVQFLS 219 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCCEEEEecccccc
Confidence 3557899999999999999998832111111123444332111100 0000 11112222233 24489999997542
Q ss_pred H-HhH-HHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 213 D-DNL-ANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ~-~~~-~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
. ..+ +.+...|.. .. .|..||+|+.... +...+...-++ .+++++.++-..++.+.+
T Consensus 220 ~k~~~~e~lf~l~N~~~~-~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~--~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKEKTNEIFFTIFNNFIE-NDKQLFFSSDKSPELLNGFDNRLITRFNMGLSI--AIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCcEEEECCCCHHHHhhccHHHHHHHhCCcee--ccCCcCHHHHHHHHHHHH
Confidence 1 122 223222221 12 4557888876442 22233344456 899999999999999876
No 80
>PRK08116 hypothetical protein; Validated
Probab=97.63 E-value=3.4e-05 Score=70.49 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=53.1
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCCCCH
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCDLND 213 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~ 213 (331)
-+-++|..|+|||.||..+++...- .-..+++++++.-.+.. .+...-...+.+.+.+-. ||||||+.....
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg~e~~ 192 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLGAERD 192 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEecccCCCC
Confidence 4779999999999999999985322 22345566543211110 000001112233333333 899999965434
Q ss_pred HhHHH--HHHhhcC-CCCCCcEEEEecCCc
Q 020066 214 DNLAN--LRLLVTN-MDLVGFYVLVTTQSR 240 (331)
Q Consensus 214 ~~~~~--l~~~l~~-~~~~gs~IIvTTR~~ 240 (331)
.+|.. +...+.. -. .|..+|+||...
T Consensus 193 t~~~~~~l~~iin~r~~-~~~~~IiTsN~~ 221 (268)
T PRK08116 193 TEWAREKVYNIIDSRYR-KGLPTIVTTNLS 221 (268)
T ss_pred CHHHHHHHHHHHHHHHH-CCCCEEEECCCC
Confidence 44533 3222221 12 466799999743
No 81
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=0.00037 Score=55.46 Aligned_cols=73 Identities=19% Similarity=0.108 Sum_probs=42.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc---------------cccHHHHHHHHHhccCCc-ee
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL---------------STVMNVITIRCKEIPSSE-ML 201 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~---------------~~~~~~l~~~l~~~l~~k-r~ 201 (331)
..+.|+|.+|+||||+++.+....... ....+++..+..... ..........+....... ..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP--GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC--CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 467899999999999999998743222 123444443332211 011222223333333333 49
Q ss_pred EEEEeCCCCCC
Q 020066 202 LIALDGLCDLN 212 (331)
Q Consensus 202 LlVLDdvw~~~ 212 (331)
+|++|++....
T Consensus 81 viiiDei~~~~ 91 (148)
T smart00382 81 VLILDEITSLL 91 (148)
T ss_pred EEEEECCcccC
Confidence 99999998853
No 82
>PRK04195 replication factor C large subunit; Provisional
Probab=97.62 E-value=0.00048 Score=68.27 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=82.3
Q ss_pred CCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHH
Q 020066 118 ELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRC 192 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l 192 (331)
.++| ..+.+.+|+..- +...+.+-|+|.+|+||||+|+.++++.. |+. +-++.+..... .....+....
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~~-ielnasd~r~~-~~i~~~i~~~ 88 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WEV-IELNASDQRTA-DVIERVAGEA 88 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CCE-EEEcccccccH-HHHHHHHHHh
Confidence 4567 566777777532 22367888999999999999999988531 222 22222221111 1111111111
Q ss_pred Hh--ccC-CceeEEEEeCCCCCCH----HhHHHHHHhhcCCCCCCcEEEEecCCch-HHh-hc-cCCccccccccCCChH
Q 020066 193 KE--IPS-SEMLLIALDGLCDLND----DNLANLRLLVTNMDLVGFYVLVTTQSRS-VAT-MM-KQTVPEAEHLIYFSES 262 (331)
Q Consensus 193 ~~--~l~-~kr~LlVLDdvw~~~~----~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~-~~-~~~~~~~~~l~~L~~~ 262 (331)
.. .+. .++-+||+|+++.... ..+..+...+.. .+..||+|+.+.. ... .. .....+ .+.+++.+
T Consensus 89 ~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~---~~~~iIli~n~~~~~~~k~Lrsr~~~I--~f~~~~~~ 163 (482)
T PRK04195 89 ATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK---AKQPIILTANDPYDPSLRELRNACLMI--EFKRLSTR 163 (482)
T ss_pred hccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc---CCCCEEEeccCccccchhhHhccceEE--EecCCCHH
Confidence 11 122 3678999999987432 345666666542 3345666664322 111 11 223456 89999999
Q ss_pred HHHHHHhhhC
Q 020066 263 NSWSNLNCEL 272 (331)
Q Consensus 263 ~s~~Lf~~~a 272 (331)
+....+.+.+
T Consensus 164 ~i~~~L~~i~ 173 (482)
T PRK04195 164 SIVPVLKRIC 173 (482)
T ss_pred HHHHHHHHHH
Confidence 8888877755
No 83
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.0018 Score=64.10 Aligned_cols=150 Identities=13% Similarity=0.038 Sum_probs=85.7
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc---------C----------CCcCceEEEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI---------V----------SRFPRHIWFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------~----------~~F~~~~wv~v 175 (331)
.++| -...+.+.+.. +.-...+-++|..|+||||+|+.+...-.. . ..|....++..
T Consensus 17 diiGq~~i~~~L~~~i~~-~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKL-QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HccChHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 4567 44555565553 233455678999999999999887653211 0 01112222322
Q ss_pred CCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhh-ccCCccc
Q 020066 176 GKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATM-MKQTVPE 252 (331)
Q Consensus 176 s~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~-~~~~~~~ 252 (331)
+.... .++...+...+... ..+++-++|+|++........+.|...+.... +.+.+|++| +...+... ......+
T Consensus 96 as~~g-vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp-~~~v~Il~tt~~~kl~~tI~SRc~~i 173 (486)
T PRK14953 96 ASNRG-IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPP-PRTIFILCTTEYDKIPPTILSRCQRF 173 (486)
T ss_pred ccCCC-HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCC-CCeEEEEEECCHHHHHHHHHHhceEE
Confidence 11111 12233343333322 34667799999998776667788887776554 455655555 43333322 2234467
Q ss_pred cccccCCChHHHHHHHhhhC
Q 020066 253 AEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+.+++.++-...+.+.+
T Consensus 174 --~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 174 --IFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred --EcCCCCHHHHHHHHHHHH
Confidence 899999888877776643
No 84
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0017 Score=65.87 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=84.8
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC---cC-----------------ceEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR---FP-----------------RHIWF 173 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~-----------------~~~wv 173 (331)
..++| -++.|.+++.. +.-...+-++|..|+||||+|+.+.+.-..... +. ..+.+
T Consensus 16 ~eiiGq~~~~~~L~~~i~~-~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i 94 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE-GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM 94 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh-CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence 35678 44455555553 222345678999999999999988754221111 00 01111
Q ss_pred EeCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhhc-cCCc
Q 020066 174 SVGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATMM-KQTV 250 (331)
Q Consensus 174 ~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~~-~~~~ 250 (331)
..+..... ++...+...+... ..+++-++|+|++........+.|+..+.... ..+.+|++|.+ ..+...+ ....
T Consensus 95 ~~~~~~~v-d~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-~~tv~Il~t~~~~kll~tI~SR~~ 172 (585)
T PRK14950 95 DAASHTSV-DDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-PHAIFILATTEVHKVPATILSRCQ 172 (585)
T ss_pred eccccCCH-HHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-CCeEEEEEeCChhhhhHHHHhccc
Confidence 11111110 2223333333322 33567789999998776677888888776655 56676666543 3333222 2334
Q ss_pred cccccccCCChHHHHHHHhhhC
Q 020066 251 PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+ .+++++.++....+...+
T Consensus 173 ~i--~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 173 RF--DFHRHSVADMAAHLRKIA 192 (585)
T ss_pred ee--eCCCCCHHHHHHHHHHHH
Confidence 56 788888887777666543
No 85
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0016 Score=61.29 Aligned_cols=132 Identities=8% Similarity=-0.031 Sum_probs=80.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCC--------------------CcCceEEEEeCCCCCccccHHHHHHHHHh-
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVS--------------------RFPRHIWFSVGKILDLSTVMNVITIRCKE- 194 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~~~~~~~~~~~l~~~l~~- 194 (331)
-....-++|..|+||||+|+.+.+.--..+ |-| ..++.........++...+...+..
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD-~~~i~~~~~~i~id~ir~l~~~~~~~ 105 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPD-VHLVAPDGQSIKKDQIRYLKEEFSKS 105 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCC-EEEeccccccCCHHHHHHHHHHHhhC
Confidence 355678999999999999988754321111 112 1222111110000222223332221
Q ss_pred ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCccccccccCCChHHHHHHHhhh
Q 020066 195 IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 195 ~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
...+++=++|+|++...+....+.|+..+.... .++.+|++|.+.. +... -+....+ ++.+++.++....+...
T Consensus 106 ~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp-~~~~~Il~t~~~~~ll~TIrSRc~~i--~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 106 GVESNKKVYIIEHADKMTASAANSLLKFLEEPS-GGTTAILLTENKHQILPTILSRCQVV--EFRPLPPESLIQRLQEE 181 (329)
T ss_pred CcccCceEEEeehHhhhCHHHHHHHHHHhcCCC-CCceEEEEeCChHhCcHHHHhhceee--eCCCCCHHHHHHHHHHc
Confidence 134556679999998877778888888887655 6777777776544 3222 2345577 89999999988888764
No 86
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.55 E-value=0.0004 Score=67.24 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=69.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccH-HHHHHHHHhccCCceeEEEEeCCCCCCHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVM-NVITIRCKEIPSSEMLLIALDGLCDLNDD 214 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~-~~l~~~l~~~l~~kr~LlVLDdvw~~~~~ 214 (331)
...+.|+|..|+|||+|++.+++...-+..=..+++++...-.... ... ......+.+.+.. .-+|+|||+......
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRS-VDLLLIDDIQFLAGK 214 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHh-CCEEEEehhhhhcCC
Confidence 3567899999999999999999853211101134455432111000 000 0000112222222 348999999753211
Q ss_pred -hH-HHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 215 -NL-ANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 215 -~~-~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
.+ +.+...+.. .. .|..+|+||.... +...+.....+ .+++.+.++-..++.+.+-
T Consensus 215 ~~~~~~l~~~~n~~~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v--~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 215 ERTQEEFFHTFNALHE-NGKQIVLTSDRPPKELPGLEERLRSRFEWGLVV--DIEPPDLETRLAILQKKAE 282 (405)
T ss_pred HHHHHHHHHHHHHHHH-CCCCEEEecCCCHHHHhhhhhhhhhhccCCeEE--EeCCCCHHHHHHHHHHHHH
Confidence 11 223322221 12 4556888886432 11122223356 8999999999999998763
No 87
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0017 Score=63.74 Aligned_cols=148 Identities=15% Similarity=0.118 Sum_probs=84.3
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC---------------------CCcCceEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV---------------------SRFPRHIW 172 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~F~~~~w 172 (331)
..++| -+..|.+.+.. +.-...+-++|..|+||||+|+.+.+.-... .+++ |
T Consensus 17 ~diiGq~~~v~~L~~~i~~-~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d---~ 92 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF-NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD---V 92 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc-CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc---e
Confidence 35668 44455555542 2223567789999999999998886532111 1122 2
Q ss_pred EEeCCCCCc-cccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhh-ccC
Q 020066 173 FSVGKILDL-STVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATM-MKQ 248 (331)
Q Consensus 173 v~vs~~~~~-~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~-~~~ 248 (331)
+.+...... .++...+...+... ..+++-++|+|++........+.|...+.... .++.+|++|.+ ..+... ...
T Consensus 93 ~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-~~~~~Il~t~~~~kl~~tI~sR 171 (451)
T PRK06305 93 LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-QHVKFFLATTEIHKIPGTILSR 171 (451)
T ss_pred EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-CCceEEEEeCChHhcchHHHHh
Confidence 222211111 12222233322211 23567789999997765566777877776654 56667666633 222222 223
Q ss_pred CccccccccCCChHHHHHHHhhh
Q 020066 249 TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 249 ~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
...+ +++++++++....+...
T Consensus 172 c~~v--~f~~l~~~el~~~L~~~ 192 (451)
T PRK06305 172 CQKM--HLKRIPEETIIDKLALI 192 (451)
T ss_pred ceEE--eCCCCCHHHHHHHHHHH
Confidence 4567 89999999887777654
No 88
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.50 E-value=0.00064 Score=66.78 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=71.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCc--CceEEEEeCCCCCcc-ccHH-HHHHHHHhccCCceeEEEEeCCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF--PRHIWFSVGKILDLS-TVMN-VITIRCKEIPSSEMLLIALDGLCDLN 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~-~~~~-~l~~~l~~~l~~kr~LlVLDdvw~~~ 212 (331)
..-+.|+|..|+|||+|++.+.+.. ...+ -.+++++...-.+.. .... .....+.+.+. +.-+|+|||+....
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~ 224 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLA 224 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhc
Confidence 4567899999999999999999853 2222 123455332111000 0000 00111222233 24489999997531
Q ss_pred H-H-hHHHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 213 D-D-NLANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 213 ~-~-~~~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
. . ..+.+...|.. .. .|..||+||.... +...+....++ .+++.+.++-..++.+.+-
T Consensus 225 ~~~~~~~~l~~~~n~l~~-~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v--~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 225 GKERTQEEFFHTFNALHE-AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTV--DIEPPDLETRIAILKKKAE 294 (450)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeE--EecCCCHHHHHHHHHHHHH
Confidence 1 1 11223222211 11 3456888886542 12233334467 8999999999999998763
No 89
>PRK08118 topology modulation protein; Reviewed
Probab=97.49 E-value=0.00019 Score=60.78 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=42.5
Q ss_pred EEEEEecCCchhHHHHHHHhhccccC-CCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIV-SRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
.|.|+|.+|+||||||+.+++...+. -+||..+|-.- ... .+.+.....+...+++.. .|+|+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~---w~~-~~~~~~~~~~~~~~~~~~--wVidG~~~ 69 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN---WEG-VPKEEQITVQNELVKEDE--WIIDGNYG 69 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC---CcC-CCHHHHHHHHHHHhcCCC--EEEeCCcc
Confidence 57899999999999999999876554 45787776311 111 112234444444555555 48898764
No 90
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.002 Score=65.17 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=85.6
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc---------Cce--------EEEEeC
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF---------PRH--------IWFSVG 176 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---------~~~--------~wv~vs 176 (331)
..++| -...|.+.+.. +.-...+-++|..|+||||+|+.+.+.-...+.. .|+ -|+.+.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~-~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid 94 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT-GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEID 94 (576)
T ss_pred HHccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeee
Confidence 35678 44555665553 2224566789999999999998886542211110 000 022221
Q ss_pred CCCC-ccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE-ecCCchHHhhc-cCCccc
Q 020066 177 KILD-LSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV-TTQSRSVATMM-KQTVPE 252 (331)
Q Consensus 177 ~~~~-~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv-TTR~~~va~~~-~~~~~~ 252 (331)
...+ ..++...+...+... ..+++-++|+|++...+....+.|+..+-... ..+.+|+ ||....+...+ .....+
T Consensus 95 ~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp-~~~~fIl~t~~~~kl~~tI~SRc~~~ 173 (576)
T PRK14965 95 GASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP-PHVKFIFATTEPHKVPITILSRCQRF 173 (576)
T ss_pred ccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC-CCeEEEEEeCChhhhhHHHHHhhhhh
Confidence 1111 112334444443322 34556689999998877777888888876544 5566654 54444454332 334567
Q ss_pred cccccCCChHHHHHHHhh
Q 020066 253 AEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 253 ~~~l~~L~~~~s~~Lf~~ 270 (331)
++++++.++....+..
T Consensus 174 --~f~~l~~~~i~~~L~~ 189 (576)
T PRK14965 174 --DFRRIPLQKIVDRLRY 189 (576)
T ss_pred --hcCCCCHHHHHHHHHH
Confidence 8888888877766654
No 91
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.49 E-value=0.0022 Score=65.28 Aligned_cols=149 Identities=9% Similarity=0.046 Sum_probs=88.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc---------------------CCCcCceEEE
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI---------------------VSRFPRHIWF 173 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~~wv 173 (331)
.++| -.+.|.+.+.. +.-...+-++|..|+||||+|+.+...-.. ..+|+.. .+
T Consensus 18 ~viGq~~~~~~L~~~i~~-~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~-~l 95 (614)
T PRK14971 18 SVVGQEALTTTLKNAIAT-NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH-EL 95 (614)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-Ee
Confidence 4668 45566666653 223455779999999999999877653211 1123321 12
Q ss_pred EeCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE-ecCCchHHhh-ccCCc
Q 020066 174 SVGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV-TTQSRSVATM-MKQTV 250 (331)
Q Consensus 174 ~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv-TTR~~~va~~-~~~~~ 250 (331)
..+.... .++...+...+... ..+++-++|+|++.......++.|+..+..-. .++.+|+ ||....+... .....
T Consensus 96 d~~~~~~-vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp-~~tifIL~tt~~~kIl~tI~SRc~ 173 (614)
T PRK14971 96 DAASNNS-VDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP-SYAIFILATTEKHKILPTILSRCQ 173 (614)
T ss_pred cccccCC-HHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC-CCeEEEEEeCCchhchHHHHhhhh
Confidence 1111111 12222333222222 33556688999998877778888888887654 5666655 4444444433 33455
Q ss_pred cccccccCCChHHHHHHHhhhC
Q 020066 251 PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
++ ++++++.++....+.+.+
T Consensus 174 iv--~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 174 IF--DFNRIQVADIVNHLQYVA 193 (614)
T ss_pred ee--ecCCCCHHHHHHHHHHHH
Confidence 78 999999998887777643
No 92
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.47 E-value=0.0008 Score=70.98 Aligned_cols=146 Identities=12% Similarity=0.128 Sum_probs=81.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc---ccCCC-cCceEE-EEeCCCC---CccccH-
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD---DIVSR-FPRHIW-FSVGKIL---DLSTVM- 185 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~-F~~~~w-v~vs~~~---~~~~~~- 185 (331)
.++| +..++++.|... ...-+.++|.+|+||||||+.+.+.- .+... .+..+| +..+.-. ......
T Consensus 188 ~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e 265 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFE 265 (852)
T ss_pred cccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHH
Confidence 4567 777777777643 33344589999999999999988732 11111 233444 3333211 111111
Q ss_pred HHHHHHHHhcc-CCceeEEEEeCCCCCC-------HHhH-HHHHHhhcCCCCCCcEEEEecCCchHHhh-------ccCC
Q 020066 186 NVITIRCKEIP-SSEMLLIALDGLCDLN-------DDNL-ANLRLLVTNMDLVGFYVLVTTQSRSVATM-------MKQT 249 (331)
Q Consensus 186 ~~l~~~l~~~l-~~kr~LlVLDdvw~~~-------~~~~-~~l~~~l~~~~~~gs~IIvTTR~~~va~~-------~~~~ 249 (331)
+.+...+.+.- .+++.+|++|++..-. ..+- +.|+..+..+ .-++|-||..++.... ....
T Consensus 266 ~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G---~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 266 NRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG---ELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC---CeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 23333333222 2468999999986531 1111 2344444332 2566666665433211 1234
Q ss_pred ccccccccCCChHHHHHHHhh
Q 020066 250 VPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
.++ .+++++.++..+++..
T Consensus 343 ~~i--~v~eps~~~~~~iL~~ 361 (852)
T TIGR03345 343 QVV--KVEEPDEETAIRMLRG 361 (852)
T ss_pred eEE--EeCCCCHHHHHHHHHH
Confidence 578 9999999999999754
No 93
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.47 E-value=0.003 Score=62.94 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=85.7
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC--C----------------cCceEEEEeC
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS--R----------------FPRHIWFSVG 176 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~----------------F~~~~wv~vs 176 (331)
.++| -.+.|...+.. +.-...+-++|..|+||||+|+.+.+.--... . +... ++...
T Consensus 15 eiiGqe~v~~~L~~~I~~-grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d-v~eld 92 (535)
T PRK08451 15 ELIGQESVSKTLSLALDN-NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID-IIEMD 92 (535)
T ss_pred HccCcHHHHHHHHHHHHc-CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-EEEec
Confidence 4668 34556666643 33344667899999999999997765321110 0 1000 11111
Q ss_pred CCCCccccHHHHHHHHHh---c-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHh-hccCCc
Q 020066 177 KILDLSTVMNVITIRCKE---I-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VAT-MMKQTV 250 (331)
Q Consensus 177 ~~~~~~~~~~~l~~~l~~---~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~-~~~~~~ 250 (331)
...+ ...+.+...+.. . ..+++-++|+|++.....+..+.|+..+-... ..+++|++|.+.. +.. ......
T Consensus 93 aas~--~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp-~~t~FIL~ttd~~kL~~tI~SRc~ 169 (535)
T PRK08451 93 AASN--RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP-SYVKFILATTDPLKLPATILSRTQ 169 (535)
T ss_pred cccc--cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC-CceEEEEEECChhhCchHHHhhce
Confidence 1110 123344443322 1 22556689999998887788888888876555 6677776665532 222 122345
Q ss_pred cccccccCCChHHHHHHHhhh
Q 020066 251 PEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
.+ ++.+++.++....+.+.
T Consensus 170 ~~--~F~~Ls~~ei~~~L~~I 188 (535)
T PRK08451 170 HF--RFKQIPQNSIISHLKTI 188 (535)
T ss_pred eE--EcCCCCHHHHHHHHHHH
Confidence 67 89999998887777653
No 94
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.47 E-value=0.00084 Score=64.68 Aligned_cols=128 Identities=12% Similarity=0.049 Sum_probs=70.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC--CCcc-ccHHHHHHHHHh-ccCCceeEEEEeCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI--LDLS-TVMNVITIRCKE-IPSSEMLLIALDGLCDL 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~-~~~~~l~~~l~~-~l~~kr~LlVLDdvw~~ 211 (331)
..+-|-++|.+|+|||+||+.+++.. ... |+.++.. .... .........+.+ .-...+.+|+||++...
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l 236 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAI 236 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 34567889999999999999998842 222 2222111 1000 111122222222 22456789999998752
Q ss_pred -----------CHHhHHHHHHhh---cC--CCCCCcEEEEecCCchHHh--hc--c-CCccccccccCCChHHHHHHHhh
Q 020066 212 -----------NDDNLANLRLLV---TN--MDLVGFYVLVTTQSRSVAT--MM--K-QTVPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 212 -----------~~~~~~~l~~~l---~~--~~~~gs~IIvTTR~~~va~--~~--~-~~~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
+......+...+ .. .. .+..||.||...+... .. + ....+ .+++.+.++-.++|+.
T Consensus 237 ~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~~~~ld~allRpgRfd~~I--~v~~P~~~~R~~Il~~ 313 (389)
T PRK03992 237 AAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNRIDILDPAILRPGRFDRII--EVPLPDEEGRLEILKI 313 (389)
T ss_pred hcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCChhhCCHHHcCCccCceEE--EECCCCHHHHHHHHHH
Confidence 111122222222 21 12 3567888887654221 11 1 12357 8999999999999997
Q ss_pred hCC
Q 020066 271 ELP 273 (331)
Q Consensus 271 ~af 273 (331)
+..
T Consensus 314 ~~~ 316 (389)
T PRK03992 314 HTR 316 (389)
T ss_pred Hhc
Confidence 653
No 95
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.44 E-value=0.002 Score=54.25 Aligned_cols=120 Identities=14% Similarity=0.092 Sum_probs=69.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccC------------------CCcCceEEEEeCCCCCccccHHHHHHHHHhc---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIV------------------SRFPRHIWFSVGKILDLSTVMNVITIRCKEI--- 195 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~--- 195 (331)
...+-++|..|+||+++|..+.+.--.. .......|+.-...... ...+++.......
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~-i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKS-IKIDQIREIIEFLSLS 97 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSS-BSHHHHHHHHHHCTSS
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccch-hhHHHHHHHHHHHHHH
Confidence 4467899999999999998775422111 12233445433322111 1234444222221
Q ss_pred -cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-H-HhhccCCccccccccCCC
Q 020066 196 -PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-V-ATMMKQTVPEAEHLIYFS 260 (331)
Q Consensus 196 -l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-v-a~~~~~~~~~~~~l~~L~ 260 (331)
..+++=++|+|++.....+.++.|+..+-... .++.+|++|.+.+ + .+..+....+ ++.+||
T Consensus 98 ~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp-~~~~fiL~t~~~~~il~TI~SRc~~i--~~~~ls 162 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLTEEAQNALLKTLEEPP-ENTYFILITNNPSKILPTIRSRCQVI--RFRPLS 162 (162)
T ss_dssp -TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTT-TTEEEEEEES-GGGS-HHHHTTSEEE--EE----
T ss_pred HhcCCceEEEeehHhhhhHHHHHHHHHHhcCCC-CCEEEEEEECChHHChHHHHhhceEE--ecCCCC
Confidence 23456789999999988889999998887766 7899988888766 2 2333344556 676664
No 96
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.43 E-value=0.00079 Score=66.66 Aligned_cols=134 Identities=11% Similarity=0.092 Sum_probs=72.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccC--C-CcCceEEEEeCCCCCcc---cc----HHHHHHHHHhc-cCCceeEEEE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIV--S-RFPRHIWFSVGKILDLS---TV----MNVITIRCKEI-PSSEMLLIAL 205 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~F~~~~wv~vs~~~~~~---~~----~~~l~~~l~~~-l~~kr~LlVL 205 (331)
.+-+-++|.+|+|||++|+.+++.-... . .+....|+.+....-.. .. ...+....++. ..+++++|+|
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfI 295 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFF 295 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 4457789999999999999999853211 0 11233444443221111 11 11222222222 2357899999
Q ss_pred eCCCCCC-------HHh-----HHHHHHhhcCCCC-CCcEEEEecCCchHHh--hc--cC-CccccccccCCChHHHHHH
Q 020066 206 DGLCDLN-------DDN-----LANLRLLVTNMDL-VGFYVLVTTQSRSVAT--MM--KQ-TVPEAEHLIYFSESNSWSN 267 (331)
Q Consensus 206 Ddvw~~~-------~~~-----~~~l~~~l~~~~~-~gs~IIvTTR~~~va~--~~--~~-~~~~~~~l~~L~~~~s~~L 267 (331)
|+++..- ..+ ...++..+..-.. .+..||.||...+... .. +. ...+ .+.+.+.++..++
T Consensus 296 DEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I--~~~~Pd~e~r~~I 373 (512)
T TIGR03689 296 DEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKI--RIERPDAEAAADI 373 (512)
T ss_pred ehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEE--EeCCCCHHHHHHH
Confidence 9997420 011 1233333332110 3445666665544321 11 12 2347 8999999999999
Q ss_pred HhhhC
Q 020066 268 LNCEL 272 (331)
Q Consensus 268 f~~~a 272 (331)
|.++.
T Consensus 374 l~~~l 378 (512)
T TIGR03689 374 FSKYL 378 (512)
T ss_pred HHHHh
Confidence 98864
No 97
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.42 E-value=0.00026 Score=69.26 Aligned_cols=131 Identities=13% Similarity=0.033 Sum_probs=71.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcC-ceEEEEeCCCCCcc-ccHH-HHHHHHHhccCCceeEEEEeCCCCCC-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFP-RHIWFSVGKILDLS-TVMN-VITIRCKEIPSSEMLLIALDGLCDLN- 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~-~~~~-~l~~~l~~~l~~kr~LlVLDdvw~~~- 212 (331)
..-+-|+|..|+|||+|++.+++... ..+.. .+.|++...-.+.. .... .-...+.+....+.-+|+|||+....
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC
Confidence 44588999999999999999998532 11222 34455432211000 0000 00011222222345689999997531
Q ss_pred ----HHhHHHHHHhhcCCCCCCcEEEEecC-CchHH--------hhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 213 ----DDNLANLRLLVTNMDLVGFYVLVTTQ-SRSVA--------TMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 213 ----~~~~~~l~~~l~~~~~~gs~IIvTTR-~~~va--------~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
+..+-.+...+.. .|..||+||. ...-. ..+...-++ .+++.+.+.-..++++.+-
T Consensus 209 ~~~~q~elf~~~n~l~~---~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v--~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 209 KTGVQTELFHTFNELHD---SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVA--KLEPPDEETRKKIARKMLE 277 (440)
T ss_pred cHHHHHHHHHHHHHHHH---cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceE--eeCCCCHHHHHHHHHHHHH
Confidence 1122222222222 3457888885 33211 122233466 8999999999999988763
No 98
>PRK08181 transposase; Validated
Probab=97.41 E-value=0.00029 Score=64.32 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=48.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhccCCceeEEEEeCCCCCCHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKEIPSSEMLLIALDGLCDLNDD 214 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~ 214 (331)
.-+.++|..|+|||.||..+.+.. ......+.|+....-.... ........ ..+.+. +.=||||||+......
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~-~l~~l~-~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTRTTDLVQKLQVARRELQLES-AIAKLD-KFDLLILDDLAYVTKD 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeeeHHHHHHHHHHHHhCCcHHH-HHHHHh-cCCEEEEeccccccCC
Confidence 347899999999999999998743 1122234454332111000 00000001 111121 2459999999654332
Q ss_pred hH-HH-HHHhhcCCCCCCcEEEEecCCc
Q 020066 215 NL-AN-LRLLVTNMDLVGFYVLVTTQSR 240 (331)
Q Consensus 215 ~~-~~-l~~~l~~~~~~gs~IIvTTR~~ 240 (331)
.| .. +...+...- .+..+||||...
T Consensus 183 ~~~~~~Lf~lin~R~-~~~s~IiTSN~~ 209 (269)
T PRK08181 183 QAETSVLFELISARY-ERRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHHHHHH-hCCCEEEEcCCC
Confidence 23 22 233222211 224689998754
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0035 Score=64.37 Aligned_cols=150 Identities=14% Similarity=0.132 Sum_probs=86.8
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC---c-C---ce-------EEEEeCCCCC
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR---F-P---RH-------IWFSVGKILD 180 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~---~~-------~wv~vs~~~~ 180 (331)
.++| -.+.|.+.+.. +.-...+-++|..|+||||+|+.+...--.... + . |. -++.+.....
T Consensus 19 dIiGQe~~v~~L~~aI~~-~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn 97 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKS-NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASN 97 (725)
T ss_pred HhcCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecccc
Confidence 4668 34456666653 233456678999999999999888653211110 0 0 00 0111111000
Q ss_pred c-cccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE-EecCCchHHh-hccCCccccccc
Q 020066 181 L-STVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL-VTTQSRSVAT-MMKQTVPEAEHL 256 (331)
Q Consensus 181 ~-~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II-vTTR~~~va~-~~~~~~~~~~~l 256 (331)
. ......+...+... ..+++-++|+|++.......++.|+..+-... ..+.+| +||+...+.. ....+..+ .+
T Consensus 98 ~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP-~~tifILaTte~~KLl~TI~SRcq~i--eF 174 (725)
T PRK07133 98 NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPP-KHVIFILATTEVHKIPLTILSRVQRF--NF 174 (725)
T ss_pred CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCC-CceEEEEEcCChhhhhHHHHhhceeE--Ec
Confidence 0 12233444444332 34666799999998877778888887776544 455545 5544444443 23344577 99
Q ss_pred cCCChHHHHHHHhhh
Q 020066 257 IYFSESNSWSNLNCE 271 (331)
Q Consensus 257 ~~L~~~~s~~Lf~~~ 271 (331)
.+++.++....+...
T Consensus 175 ~~L~~eeI~~~L~~i 189 (725)
T PRK07133 175 RRISEDEIVSRLEFI 189 (725)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999999888777653
No 100
>PRK10536 hypothetical protein; Provisional
Probab=97.39 E-value=0.0011 Score=59.84 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=63.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC-CC--cc----------------
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI-LD--LS---------------- 182 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~--~~---------------- 182 (331)
....++.+|.. ..++.+.|..|+|||+||..+..+.-..+.|+..+-. -+.- .. ..
T Consensus 63 ~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~-RP~v~~ge~LGfLPG~~~eK~~p~~~p 137 (262)
T PRK10536 63 AQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT-RPVLQADEDLGFLPGDIAEKFAPYFRP 137 (262)
T ss_pred HHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe-CCCCCchhhhCcCCCCHHHHHHHHHHH
Confidence 44556666652 2488899999999999998877643223345433322 1111 01 00
Q ss_pred --ccHHH------HHHHHH-----------hccCCcee---EEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc
Q 020066 183 --TVMNV------ITIRCK-----------EIPSSEML---LIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR 240 (331)
Q Consensus 183 --~~~~~------l~~~l~-----------~~l~~kr~---LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~ 240 (331)
+.+.. +...+. .+++|+.+ +||+|...+.+..+...+...+ . .+|++|+|=-..
T Consensus 138 i~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g-~~sk~v~~GD~~ 213 (262)
T PRK10536 138 VYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---G-ENVTVIVNGDIT 213 (262)
T ss_pred HHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---C-CCCEEEEeCChh
Confidence 11111 111111 13455544 9999999987765655565555 3 788999987543
No 101
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.39 E-value=0.0013 Score=68.60 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=80.4
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc---ccCCCc-CceEEE-EeCCCCC---ccccHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD---DIVSRF-PRHIWF-SVGKILD---LSTVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv-~vs~~~~---~~~~~~ 186 (331)
.++| +.+++++.|... ...-+.++|.+|+|||++|+.+.+.- .+...+ +..+|. +.+.-.. .....+
T Consensus 183 ~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred cccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 4567 677788777643 23335589999999999999988742 122222 344542 2211111 111222
Q ss_pred HHHHHHHhcc-CCceeEEEEeCCCCC---------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh-------ccCC
Q 020066 187 VITIRCKEIP-SSEMLLIALDGLCDL---------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM-------MKQT 249 (331)
Q Consensus 187 ~l~~~l~~~l-~~kr~LlVLDdvw~~---------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~-------~~~~ 249 (331)
.....+.+.+ ..++.+|++|++..- +.+.-+.++..+..+ .-++|-+|..++.... ....
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g---~i~~IgaTt~~e~~~~~~~d~al~rRf 337 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG---KLRCIGSTTYEEYKNHFEKDRALSRRF 337 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC---CeEEEEecCHHHHHHHhhhhHHHHHhC
Confidence 2222233222 346899999998732 112234455555432 2344544443222111 1123
Q ss_pred ccccccccCCChHHHHHHHhhh
Q 020066 250 VPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
..+ .+++++.++..++++..
T Consensus 338 ~~i--~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 338 QKI--DVGEPSIEETVKILKGL 357 (731)
T ss_pred ceE--EeCCCCHHHHHHHHHHH
Confidence 467 89999999999999954
No 102
>PRK07261 topology modulation protein; Provisional
Probab=97.35 E-value=0.00043 Score=58.83 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=42.5
Q ss_pred EEEEEecCCchhHHHHHHHhhccccC-CCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIV-SRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
.|.|+|++|+||||||+.+.....+. -+.|...|-.. +. ..+.++....+...+.+.+ .|+|+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--wIidg~~~ 68 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---WQ-ERDDDDMIADISNFLLKHD--WIIDGNYS 68 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---cc-cCCHHHHHHHHHHHHhCCC--EEEcCcch
Confidence 47899999999999999987643222 13455556321 11 1234556666777777666 58888653
No 103
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.33 E-value=0.00026 Score=60.62 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=46.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCC-----------ceeEEEE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSS-----------EMLLIAL 205 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~-----------kr~LlVL 205 (331)
..-+.++|..|+|||.||..+.+.. +...+ .+.|+..+ .+...++..-.. +-=||||
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~-~~~g~-~v~f~~~~----------~L~~~l~~~~~~~~~~~~~~~l~~~dlLil 114 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA-IRKGY-SVLFITAS----------DLLDELKQSRSDGSYEELLKRLKRVDLLIL 114 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH-HHTT---EEEEEHH----------HHHHHHHCCHCCTTHCHHHHHHHTSSCEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh-ccCCc-ceeEeecC----------ceeccccccccccchhhhcCccccccEecc
Confidence 3458899999999999999998753 22223 24455432 222222221111 1348899
Q ss_pred eCCCCCCHHhHHH--HHHhhcC-CCCCCcEEEEecCCc
Q 020066 206 DGLCDLNDDNLAN--LRLLVTN-MDLVGFYVLVTTQSR 240 (331)
Q Consensus 206 Ddvw~~~~~~~~~--l~~~l~~-~~~~gs~IIvTTR~~ 240 (331)
||+-......|.. +..-+.. -+ ++ .+||||...
T Consensus 115 DDlG~~~~~~~~~~~l~~ii~~R~~-~~-~tIiTSN~~ 150 (178)
T PF01695_consen 115 DDLGYEPLSEWEAELLFEIIDERYE-RK-PTIITSNLS 150 (178)
T ss_dssp ETCTSS---HHHHHCTHHHHHHHHH-T--EEEEEESS-
T ss_pred cccceeeecccccccchhhhhHhhc-cc-CeEeeCCCc
Confidence 9998765555532 1111111 11 33 688888743
No 104
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.33 E-value=0.00099 Score=58.22 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=56.5
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCC--CCCcc------------------c
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGK--ILDLS------------------T 183 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~------------------~ 183 (331)
...++.|. ...++.+.|.+|.|||.||....-+.-..+.|+..+++--.- ..+.. +
T Consensus 10 ~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d 85 (205)
T PF02562_consen 10 KFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYD 85 (205)
T ss_dssp HHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHH
T ss_pred HHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 34455555 355888999999999999977765543446788777752211 11111 0
Q ss_pred ------cHHHHHHHHH---------hccCCc---eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc
Q 020066 184 ------VMNVITIRCK---------EIPSSE---MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR 240 (331)
Q Consensus 184 ------~~~~l~~~l~---------~~l~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~ 240 (331)
..+.+...+. .+++|+ ..+||+|.+.+....++..+...+ . .|||||++=-..
T Consensus 86 ~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g-~~skii~~GD~~ 156 (205)
T PF02562_consen 86 ALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---G-EGSKIIITGDPS 156 (205)
T ss_dssp HHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-----TT-EEEEEE---
T ss_pred HHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---C-CCcEEEEecCce
Confidence 0111111111 234454 459999999987766666665554 4 789999987543
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0055 Score=61.77 Aligned_cols=149 Identities=13% Similarity=0.062 Sum_probs=88.0
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC--------------------CcCceEEEE
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS--------------------RFPRHIWFS 174 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~ 174 (331)
.++| -...|.+++.. +.-.+.+-++|..|+||||+|+.+.+.-.... +++. +++.
T Consensus 17 diiGqe~iv~~L~~~i~~-~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~id 94 (563)
T PRK06647 17 SLEGQDFVVETLKHSIES-NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEID 94 (563)
T ss_pred HccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEec
Confidence 5678 45667777663 23345677999999999999998876422111 1221 1221
Q ss_pred eCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-chHHhh-ccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-RSVATM-MKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~~va~~-~~~~~~ 251 (331)
...... ..+..++...+... ..+++-++|+|++...+...++.|+..+.... ..+.+|++|.. ..+... ......
T Consensus 95 gas~~~-vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp-~~~vfI~~tte~~kL~~tI~SRc~~ 172 (563)
T PRK06647 95 GASNTS-VQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPP-PYIVFIFATTEVHKLPATIKSRCQH 172 (563)
T ss_pred CcccCC-HHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCC-CCEEEEEecCChHHhHHHHHHhceE
Confidence 110000 01222233222222 34566689999998877778888888877555 56666665543 333322 223446
Q ss_pred ccccccCCChHHHHHHHhhhC
Q 020066 252 EAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ ++.+++.++-...+.+.+
T Consensus 173 ~--~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 173 F--NFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred E--EecCCCHHHHHHHHHHHH
Confidence 7 889998888877777654
No 106
>PRK12377 putative replication protein; Provisional
Probab=97.30 E-value=0.00065 Score=61.28 Aligned_cols=98 Identities=13% Similarity=0.002 Sum_probs=52.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc----ccHHHHHHHHHhccCCceeEEEEeCCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----TVMNVITIRCKEIPSSEMLLIALDGLCDLN 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~ 212 (331)
..-+.++|..|+|||+||..+.+... ...-.++++++..-.... .+.... ..+.+.+ .+-=||||||+....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~~l~~~l~~~~~~~~~~-~~~l~~l-~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVPDVMSRLHESYDNGQSG-EKFLQEL-CKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHHHHHHHHHHHHhccchH-HHHHHHh-cCCCEEEEcCCCCCC
Confidence 45688999999999999999998532 223345666543211110 000000 1112222 235699999996543
Q ss_pred HHhHHH--HHHhhcCC-CCCCcEEEEecCC
Q 020066 213 DDNLAN--LRLLVTNM-DLVGFYVLVTTQS 239 (331)
Q Consensus 213 ~~~~~~--l~~~l~~~-~~~gs~IIvTTR~ 239 (331)
...|.. |...+... . ++-.+||||..
T Consensus 177 ~s~~~~~~l~~ii~~R~~-~~~ptiitSNl 205 (248)
T PRK12377 177 ETKNEQVVLNQIIDRRTA-SMRSVGMLTNL 205 (248)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCCEEEEcCC
Confidence 344532 33333221 1 33467888864
No 107
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0056 Score=62.40 Aligned_cols=149 Identities=13% Similarity=0.079 Sum_probs=81.9
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc-----Cc-eE-------------EEEe
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF-----PR-HI-------------WFSV 175 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~-~~-------------wv~v 175 (331)
.++| -...|.+++.. +.-..-+-++|..|+||||+|+.+.+.-...... .| .+ ++.+
T Consensus 17 ~liGq~~i~~~L~~~l~~-~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei 95 (620)
T PRK14948 17 ELVGQEAIATTLKNALIS-NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEI 95 (620)
T ss_pred hccChHHHHHHHHHHHHc-CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEE
Confidence 4557 34455555553 2223456789999999999999887643221100 00 00 1111
Q ss_pred CCCCCc-cccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc-hHHhh-ccCCcc
Q 020066 176 GKILDL-STVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR-SVATM-MKQTVP 251 (331)
Q Consensus 176 s~~~~~-~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~-~va~~-~~~~~~ 251 (331)
...... .+...++...+... ..+++-++|+|++.......++.|+..+.... ..+.+|++|.+. .+... ......
T Consensus 96 ~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp-~~tvfIL~t~~~~~llpTIrSRc~~ 174 (620)
T PRK14948 96 DAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPP-PRVVFVLATTDPQRVLPTIISRCQR 174 (620)
T ss_pred eccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCC-cCeEEEEEeCChhhhhHHHHhheeE
Confidence 111100 02233333332221 23556689999999877778888888886544 455555555433 33222 223445
Q ss_pred ccccccCCChHHHHHHHhh
Q 020066 252 EAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~ 270 (331)
+ .+..++.++....+.+
T Consensus 175 ~--~f~~l~~~ei~~~L~~ 191 (620)
T PRK14948 175 F--DFRRIPLEAMVQHLSE 191 (620)
T ss_pred E--EecCCCHHHHHHHHHH
Confidence 6 7788888777666554
No 108
>PRK13695 putative NTPase; Provisional
Probab=97.27 E-value=0.00095 Score=56.73 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+.|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998754
No 109
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.20 E-value=0.0019 Score=62.29 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=70.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
..+-+.++|.+|+|||+||+.+.+.. ..+| +.+..+.-.... .....+...+.......+.+|+||++...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l--~~~f---i~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~ 252 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHT--TATF---IRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIAT 252 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhcc
Confidence 34567899999999999999998842 2222 111111100000 11222333333334567899999997631
Q ss_pred ---------CHH---hHHHHHHhhcC--CCCCCcEEEEecCCchHHh--hccC---CccccccccCCChHHHHHHHhhhC
Q 020066 212 ---------NDD---NLANLRLLVTN--MDLVGFYVLVTTQSRSVAT--MMKQ---TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ---------~~~---~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~--~~~~---~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+.. .+..+...+.. .. .+..||.||...+... ...+ ...+ .+...+.++-..+|+.+.
T Consensus 253 ~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-~~v~VI~aTN~~d~LDpAllR~GRfd~~I--~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 253 KRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRADTLDPALLRPGRLDRKI--EFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred ccccccCCccHHHHHHHHHHHHHhhccCCC-CCEEEEEecCCchhCCHHHcCCCcccEEE--EeCCcCHHHHHHHHHHHH
Confidence 001 12233333322 22 4667888887665321 1221 2346 788888888878887543
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.20 E-value=0.0019 Score=68.12 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=80.0
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc---ccCCCc-CceEEE-EeCCCC---CccccHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD---DIVSRF-PRHIWF-SVGKIL---DLSTVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv-~vs~~~---~~~~~~~ 186 (331)
.++| +.+++++.|... ..+-+.++|.+|+|||++|+.+...- .+.... +..+|. +.+.-. ......+
T Consensus 180 ~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 180 PVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFE 257 (821)
T ss_pred CCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHH
Confidence 4567 888899988753 22234589999999999999887642 111111 244553 221111 1112222
Q ss_pred -HHHHHHHhccCCceeEEEEeCCCCC--------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh-------ccCCc
Q 020066 187 -VITIRCKEIPSSEMLLIALDGLCDL--------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM-------MKQTV 250 (331)
Q Consensus 187 -~l~~~l~~~l~~kr~LlVLDdvw~~--------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~-------~~~~~ 250 (331)
.+...+.+.-..++.+|++|++..- ..+.-+.|+..+..+ .-++|-+|........ .....
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg---~l~~IgaTt~~ey~~~ie~D~aL~rRf~ 334 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG---ELQCIGATTLDEYRKHIEKDPALERRFQ 334 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC---CcEEEEeCCHHHHHHHHhcCHHHHhcce
Confidence 2222332223456899999998521 111223344444433 2455666655543221 12334
Q ss_pred cccccccCCChHHHHHHHhh
Q 020066 251 PEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~ 270 (331)
.+ .+...+.++...++..
T Consensus 335 ~I--~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 335 PV--YVGEPSVEETIEILFG 352 (821)
T ss_pred EE--ecCCCCHHHHHHHHHH
Confidence 56 7888898888888764
No 111
>PRK06921 hypothetical protein; Provisional
Probab=97.19 E-value=0.00038 Score=63.52 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=51.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHHHHHHHHHhccCCceeEEEEeCCCC-----
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMNVITIRCKEIPSSEMLLIALDGLCD----- 210 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~l~~~l~~~l~~kr~LlVLDdvw~----- 210 (331)
..-+.++|..|+|||.||..+.+... +.+-..++|++....++.. ...+.....+ +.+. +-=||||||+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~-~~~~-~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPFVEGFGDLKDDFDLLEAKL-NRMK-KVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEHHHHHHHHHHHHHHHHHHH-HHhc-CCCEEEEeccccccCCC
Confidence 45678999999999999999988532 2212345566543222111 1111111111 2222 346999999932
Q ss_pred CCHHhHHH--HHHhhcC-CCCCCcEEEEecCC
Q 020066 211 LNDDNLAN--LRLLVTN-MDLVGFYVLVTTQS 239 (331)
Q Consensus 211 ~~~~~~~~--l~~~l~~-~~~~gs~IIvTTR~ 239 (331)
+...+|.. +...+.. .. .+..+||||..
T Consensus 194 e~~t~~~~~~lf~iin~R~~-~~k~tIitsn~ 224 (266)
T PRK06921 194 PRATEWQIEQMYSVLNYRYL-NHKPILISSEL 224 (266)
T ss_pred ccCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 22234542 3222221 11 34568888864
No 112
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.01 Score=59.94 Aligned_cols=150 Identities=13% Similarity=0.111 Sum_probs=85.2
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC--------------------CcCceEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS--------------------RFPRHIWF 173 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv 173 (331)
..++| -.+.+.+++.. +.-...+-++|..|+||||+|+.+...-.... +++ .+.+
T Consensus 16 ~~viGq~~v~~~L~~~i~~-~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~d-v~ei 93 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQ-GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMD-VIEI 93 (559)
T ss_pred HhccCcHHHHHHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCC-eEEe
Confidence 35668 45556666653 23345566899999999999988854321111 111 1122
Q ss_pred EeCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEec-CCchHHhh-ccCCc
Q 020066 174 SVGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTT-QSRSVATM-MKQTV 250 (331)
Q Consensus 174 ~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTT-R~~~va~~-~~~~~ 250 (331)
..+.... .+....+...+... ..++.-++|+|++.......++.|+..+.... ..+.+|++| ....+... .....
T Consensus 94 daas~~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp-~~~ifIlatt~~~ki~~tI~SRc~ 171 (559)
T PRK05563 94 DAASNNG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPP-AHVIFILATTEPHKIPATILSRCQ 171 (559)
T ss_pred eccccCC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCC-CCeEEEEEeCChhhCcHHHHhHhe
Confidence 1111110 02233333333322 34667788999998877778888888776544 455555444 43333322 22344
Q ss_pred cccccccCCChHHHHHHHhhhC
Q 020066 251 PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+ .+.+++.++....+...+
T Consensus 172 ~~--~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 172 RF--DFKRISVEDIVERLKYIL 191 (559)
T ss_pred EE--ecCCCCHHHHHHHHHHHH
Confidence 56 888888888877776644
No 113
>CHL00176 ftsH cell division protein; Validated
Probab=97.16 E-value=0.0037 Score=63.79 Aligned_cols=141 Identities=13% Similarity=0.137 Sum_probs=78.2
Q ss_pred cHHHHHHHHhcC-------CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC-CCcc---ccHHHHHH
Q 020066 122 SVDSVKNALLRD-------GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI-LDLS---TVMNVITI 190 (331)
Q Consensus 122 ~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~---~~~~~l~~ 190 (331)
+..+++..|... ....+-+-++|.+|+|||+||+.+++...+ + |+.++.. +... .....+..
T Consensus 194 ~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~s~f~~~~~g~~~~~vr~ 266 (638)
T CHL00176 194 EFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISGSEFVEMFVGVGAARVRD 266 (638)
T ss_pred HHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccHHHHHHHhhhhhHHHHHH
Confidence 555555555432 112345789999999999999999874321 1 2222211 1000 12223334
Q ss_pred HHHhccCCceeEEEEeCCCCC----------CHHhH----HHHHHhhcC--CCCCCcEEEEecCCchHHh--hc--c-CC
Q 020066 191 RCKEIPSSEMLLIALDGLCDL----------NDDNL----ANLRLLVTN--MDLVGFYVLVTTQSRSVAT--MM--K-QT 249 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~----------~~~~~----~~l~~~l~~--~~~~gs~IIvTTR~~~va~--~~--~-~~ 249 (331)
.+.......+++|+||++... ....+ ..++..+.. .+ .+-.||.||...+... .. + ..
T Consensus 267 lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~LD~ALlRpGRFd 345 (638)
T CHL00176 267 LFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDILDAALLRPGRFD 345 (638)
T ss_pred HHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHhhhhhhhccccCc
Confidence 445555677899999999542 01222 233332221 23 4566777776654322 11 1 22
Q ss_pred ccccccccCCChHHHHHHHhhhC
Q 020066 250 VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
..+ .+...+.++-.++|+.++
T Consensus 346 ~~I--~v~lPd~~~R~~IL~~~l 366 (638)
T CHL00176 346 RQI--TVSLPDREGRLDILKVHA 366 (638)
T ss_pred eEE--EECCCCHHHHHHHHHHHH
Confidence 456 788888888888887765
No 114
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.014 Score=54.71 Aligned_cols=133 Identities=10% Similarity=0.028 Sum_probs=82.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCC-------------------cCceEEEEeCCCCCcc-ccHHHHHHHHHhc-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSR-------------------FPRHIWFSVGKILDLS-TVMNVITIRCKEI- 195 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~-~~~~~l~~~l~~~- 195 (331)
..-+-+.|..|+||+++|+.+...--.... -+...++.-....... +....+...+...
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 456778999999999999887542211110 0111122110011111 2233333333322
Q ss_pred cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHHHHHhhhC
Q 020066 196 PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 196 l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
..+++=++|+|++...+....+.++..+-... .++.+|++|.+.+ +. +..+....+ .+.+++.++..+.+....
T Consensus 104 ~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp-~~~~fiL~t~~~~~llpTI~SRC~~~--~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAAANALLKTLEEPR-PNTYFLLQADLSAALLPTIYSRCQTW--LIHPPEEQQALDWLQAQS 179 (325)
T ss_pred ccCCceEEEEechhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChHhCchHHHhhceEE--eCCCCCHHHHHHHHHHHh
Confidence 34666688899999988888899988887665 6778777776654 33 333445678 999999999998887753
No 115
>PRK09183 transposase/IS protein; Provisional
Probab=97.14 E-value=0.00025 Score=64.42 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=48.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhccCCceeEEEEeCCCCCCHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKEIPSSEMLLIALDGLCDLNDD 214 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~ 214 (331)
..+.|+|..|+|||+||..+.+.... ..+ .+.++....-.... .....+...+...+ .+.-++||||+......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~~~ 179 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLPFS 179 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCCCC
Confidence 45669999999999999999764221 122 22233321110000 00001112222222 34569999999764222
Q ss_pred hHH--HHHHhhcC-CCCCCcEEEEecCCc
Q 020066 215 NLA--NLRLLVTN-MDLVGFYVLVTTQSR 240 (331)
Q Consensus 215 ~~~--~l~~~l~~-~~~~gs~IIvTTR~~ 240 (331)
.+. .+...+.. .. .+ .+|+||...
T Consensus 180 ~~~~~~lf~li~~r~~-~~-s~iiTsn~~ 206 (259)
T PRK09183 180 QEEANLFFQVIAKRYE-KG-SMILTSNLP 206 (259)
T ss_pred hHHHHHHHHHHHHHHh-cC-cEEEecCCC
Confidence 232 23333321 12 34 488888643
No 116
>PRK06526 transposase; Provisional
Probab=97.13 E-value=0.00017 Score=65.30 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-+.++|.+|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 45789999999999999998764
No 117
>PHA00729 NTP-binding motif containing protein
Probab=97.13 E-value=0.004 Score=55.15 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=24.9
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 126 VKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+++.+. ..+...|.|.|.+|+||||||..+.+.
T Consensus 8 ~~~~l~--~~~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 8 IVSAYN--NNGFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHh--cCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 344443 334557889999999999999998774
No 118
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.12 E-value=0.0031 Score=62.71 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=68.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC--Cc--cccHHHHHHHHHhccCCceeEEEEeCCCCCC-
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL--DL--STVMNVITIRCKEIPSSEMLLIALDGLCDLN- 212 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~- 212 (331)
+-+-++|.+|+|||+||+.+.+.... + ++.++... +. ......+...+.......+++|+||++....
T Consensus 89 ~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~ 161 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGR 161 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhh
Confidence 34778999999999999999875322 2 22222110 00 0122333344444445668999999985420
Q ss_pred ---------HHhHHHH----HHhhcC--CCCCCcEEEEecCCchHHh--hc--c-CCccccccccCCChHHHHHHHhhhC
Q 020066 213 ---------DDNLANL----RLLVTN--MDLVGFYVLVTTQSRSVAT--MM--K-QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ---------~~~~~~l----~~~l~~--~~~~gs~IIvTTR~~~va~--~~--~-~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
...+... +..+.. .. .+-.||.||...+... .. + ....+ .+...+.++-.++|+.+.
T Consensus 162 ~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~-~~v~vI~aTn~~~~ld~al~r~gRfd~~i--~i~~Pd~~~R~~il~~~l 238 (495)
T TIGR01241 162 QRGAGLGGGNDEREQTLNQLLVEMDGFGTN-TGVIVIAATNRPDVLDPALLRPGRFDRQV--VVDLPDIKGREEILKVHA 238 (495)
T ss_pred ccccCcCCccHHHHHHHHHHHhhhccccCC-CCeEEEEecCChhhcCHHHhcCCcceEEE--EcCCCCHHHHHHHHHHHH
Confidence 1122222 222221 22 4556677776544211 11 1 22356 788888888888887754
No 119
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.11 E-value=0.00066 Score=61.06 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=53.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-c---cHHHHHHHHHhccCCceeEEEEeCCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-T---VMNVITIRCKEIPSSEMLLIALDGLCDLN 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~---~~~~l~~~l~~~l~~kr~LlVLDdvw~~~ 212 (331)
...+.++|.+|+|||+||..+.+..... -..+++++++.-.... . ..+.-...+.+.+. +.=||||||+....
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~-~~dlLvIDDig~~~ 175 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS-NVDLLVIDEIGVQT 175 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc-cCCEEEEeCCCCCC
Confidence 3467899999999999999998853221 2244555443221100 0 00001112233344 35589999998765
Q ss_pred HHhHHH--HHHhhcC-CCCCCcEEEEecCC
Q 020066 213 DDNLAN--LRLLVTN-MDLVGFYVLVTTQS 239 (331)
Q Consensus 213 ~~~~~~--l~~~l~~-~~~~gs~IIvTTR~ 239 (331)
..+|.. +..-+.. .. ..-.+||||..
T Consensus 176 ~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 176 ESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 566664 2222221 11 24568888864
No 120
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0013 Score=62.98 Aligned_cols=129 Identities=11% Similarity=0.098 Sum_probs=76.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCc--eEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR--HIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~ 211 (331)
....+-|+|..|.|||.|++.+.+. ...+... +++++...-+... .-.+.-...+++.. .-=++++||++--
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l 187 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFL 187 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHh
Confidence 4778999999999999999999984 3333332 2333211111000 00111122233333 2348999999752
Q ss_pred C-----HHhHHHHHHhhcCCCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 212 N-----DDNLANLRLLVTNMDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 212 ~-----~~~~~~l~~~l~~~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
. +..+-.+...+.. .|-.||+|++... +...+...-++ .+.+++.+....++.+++-
T Consensus 188 ~gk~~~qeefFh~FN~l~~---~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~--~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 188 AGKERTQEEFFHTFNALLE---NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVV--EIEPPDDETRLAILRKKAE 258 (408)
T ss_pred cCChhHHHHHHHHHHHHHh---cCCEEEEEcCCCchhhccccHHHHHHHhceeEE--eeCCCCHHHHHHHHHHHHH
Confidence 1 2223333444433 3448999996443 33344455678 9999999999999999664
No 121
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.06 E-value=0.0013 Score=61.29 Aligned_cols=97 Identities=8% Similarity=0.049 Sum_probs=55.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhccCCceeEEEEeCCCCCCH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKEIPSSEMLLIALDGLCDLND 213 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~ 213 (331)
.+-+-++|..|+|||.||..+++... ...+. +.+++++.-.... .....+...+. .+. +-=||||||+..+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~~-v~~~~~~~l~~~lk~~~~~~~~~~~l~-~l~-~~dlLiIDDiG~e~~ 231 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA-KKGVS-STLLHFPEFIRELKNSISDGSVKEKID-AVK-EAPVLMLDDIGAEQM 231 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCC-EEEEEHHHHHHHHHHHHhcCcHHHHHH-Hhc-CCCEEEEecCCCccc
Confidence 45677999999999999999998642 22232 4455443211100 00001111121 122 356899999987766
Q ss_pred HhHHH--HHHhhcC--CCCCCcEEEEecC
Q 020066 214 DNLAN--LRLLVTN--MDLVGFYVLVTTQ 238 (331)
Q Consensus 214 ~~~~~--l~~~l~~--~~~~gs~IIvTTR 238 (331)
..|.. +...+.. .. .+-.+|+||.
T Consensus 232 s~~~~~~ll~~Il~~R~~-~~~~ti~TSN 259 (306)
T PRK08939 232 SSWVRDEVLGVILQYRMQ-EELPTFFTSN 259 (306)
T ss_pred cHHHHHHHHHHHHHHHHH-CCCeEEEECC
Confidence 77854 5444421 12 4557888886
No 122
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.04 E-value=0.00048 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|.+|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 123
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.04 E-value=0.011 Score=53.67 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=43.3
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCC----------------CCCCcEEEEecCCchHHh-------hccCCccccccc
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNM----------------DLVGFYVLVTTQSRSVAT-------MMKQTVPEAEHL 256 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~----------------~~~gs~IIvTTR~~~va~-------~~~~~~~~~~~l 256 (331)
...|++|++...+.+.+..|...+..+ . ++.+||+|+....-+. .......+ .+
T Consensus 106 g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~-~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i--~i 182 (262)
T TIGR02640 106 GFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVH-PEFRVIFTSNPVEYAGVHETQDALLDRLITI--FM 182 (262)
T ss_pred CCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecC-CCCEEEEeeCCccccceecccHHHHhhcEEE--EC
Confidence 468999999987777777777665321 1 3568888887432110 01112234 67
Q ss_pred cCCChHHHHHHHhhhC
Q 020066 257 IYFSESNSWSNLNCEL 272 (331)
Q Consensus 257 ~~L~~~~s~~Lf~~~a 272 (331)
...+.++-.+++..+.
T Consensus 183 ~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 183 DYPDIDTETAILRAKT 198 (262)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 7777777777877753
No 124
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.04 E-value=0.0052 Score=61.65 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=79.5
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc--CCCcC-ceEEEEeCCC---CCccccHHHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI--VSRFP-RHIWFSVGKI---LDLSTVMNVI 188 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~-~~~wv~vs~~---~~~~~~~~~l 188 (331)
.++| .++.+...+.. ....-+-|+|..|+|||++|+.+++...- ...|. ..-|+.+.-. ++...-.+.+
T Consensus 66 ~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~l 143 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPL 143 (531)
T ss_pred HeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhh
Confidence 4668 55555555543 22334568999999999999999863211 12232 1234433311 1111000000
Q ss_pred HH----HH---Hh--------------ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCC--------------------
Q 020066 189 TI----RC---KE--------------IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMD-------------------- 227 (331)
Q Consensus 189 ~~----~l---~~--------------~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-------------------- 227 (331)
.. -+ .. .-+...=.|+||++...+....+.|...+....
T Consensus 144 i~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~ 223 (531)
T TIGR02902 144 IGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIH 223 (531)
T ss_pred cCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchh
Confidence 00 00 00 001123589999999987777777775542210
Q ss_pred -------CCCcEEEEe-cCCch-HHhhc-cCCccccccccCCChHHHHHHHhhhC
Q 020066 228 -------LVGFYVLVT-TQSRS-VATMM-KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 228 -------~~gs~IIvT-TR~~~-va~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
....++|.+ |++.. +.... .....+ .+.+|+.+|-..++++.+
T Consensus 224 ~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I--~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 224 DIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEI--FFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred hhcccCcccceEEEEEecCCcccCChHHhhhhhee--eCCCCCHHHHHHHHHHHH
Confidence 012366654 44433 11111 122356 799999999999998865
No 125
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.04 E-value=0.0063 Score=63.34 Aligned_cols=148 Identities=11% Similarity=0.037 Sum_probs=77.2
Q ss_pred cHHHHHHHHhcC---CCCcEEEEEEecCCchhHHHHHHHhhcccc---CCCcC--ceEEEEeCCCCCcc-----------
Q 020066 122 SVDSVKNALLRD---GSTVRFIHIVGVSGTEVTHIAHRVFMDDDI---VSRFP--RHIWFSVGKILDLS----------- 182 (331)
Q Consensus 122 ~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~vs~~~~~~----------- 182 (331)
+.++|...|... ...-.++-|+|.+|.|||+.++.|.+.-.- ..... ..++|+...-....
T Consensus 763 EIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~ 842 (1164)
T PTZ00112 763 EIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLF 842 (1164)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHc
Confidence 677777766533 223357789999999999999999764211 11122 13444332111110
Q ss_pred -------ccHHHHHHHHHhcc-C--CceeEEEEeCCCCCCHHhHHHHHHhhc-CCCCCCcEEEE--ecCCch--------
Q 020066 183 -------TVMNVITIRCKEIP-S--SEMLLIALDGLCDLNDDNLANLRLLVT-NMDLVGFYVLV--TTQSRS-------- 241 (331)
Q Consensus 183 -------~~~~~l~~~l~~~l-~--~kr~LlVLDdvw~~~~~~~~~l~~~l~-~~~~~gs~IIv--TTR~~~-------- 241 (331)
.....+...+...+ . ....+||||+|..-....-+.|...|. ... .+++|++ +|..-+
T Consensus 843 g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~-s~SKLiLIGISNdlDLperLdPR 921 (1164)
T PTZ00112 843 NKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK-INSKLVLIAISNTMDLPERLIPR 921 (1164)
T ss_pred CCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc-cCCeEEEEEecCchhcchhhhhh
Confidence 11222333344433 1 234699999987532111112222221 112 4556544 332222
Q ss_pred HHhhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 242 VATMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 242 va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
+...++.. .+ ..+|.+.++-..++..++-
T Consensus 922 LRSRLg~e-eI--vF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 922 CRSRLAFG-RL--VFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hhhccccc-cc--cCCCCCHHHHHHHHHHHHH
Confidence 22222222 35 6799999999999998874
No 126
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.02 E-value=0.0023 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.1
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999997764
No 127
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.00 E-value=0.0052 Score=51.65 Aligned_cols=102 Identities=12% Similarity=0.074 Sum_probs=57.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEE---eCCCC--Cc----------cccHHHHHHHHHhccCCceeE
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFS---VGKIL--DL----------STVMNVITIRCKEIPSSEMLL 202 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~--~~----------~~~~~~l~~~l~~~l~~kr~L 202 (331)
.+++|+|..|+|||||.+.+..-. ......+++. +.... +. .+.-+...-.+...+-.++-+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~i 103 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARL 103 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCE
Confidence 478999999999999999998632 2233333331 11100 00 011122223345556667889
Q ss_pred EEEeCCCCC-CHHhHHHHHHhhcCC-CCCCcEEEEecCCchHH
Q 020066 203 IALDGLCDL-NDDNLANLRLLVTNM-DLVGFYVLVTTQSRSVA 243 (331)
Q Consensus 203 lVLDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IIvTTR~~~va 243 (331)
++||+--.. +......+...+..- . .|..||++|.+....
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~ 145 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLDEV 145 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHHH
Confidence 999986543 333344444444321 2 466788888876643
No 128
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.99 E-value=0.0044 Score=64.46 Aligned_cols=148 Identities=16% Similarity=0.091 Sum_probs=80.9
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc---ccCCC-cCceEEEE-eCCCC---CccccHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD---DIVSR-FPRHIWFS-VGKIL---DLSTVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~-F~~~~wv~-vs~~~---~~~~~~~ 186 (331)
.++| +..++++.|... ...-+-++|.+|+|||+||+.+.+.- .+... .++.+|.. .+.-. ....+.+
T Consensus 187 ~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 187 PLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred cCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 3556 888888888753 22233479999999999999988632 11111 24555532 11100 0001122
Q ss_pred HHHHHHHhcc-CCceeEEEEeCCCCC--------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh-------ccCCc
Q 020066 187 VITIRCKEIP-SSEMLLIALDGLCDL--------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM-------MKQTV 250 (331)
Q Consensus 187 ~l~~~l~~~l-~~kr~LlVLDdvw~~--------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~-------~~~~~ 250 (331)
.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-++|-+|..++.... .....
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq 342 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHhhCc
Confidence 2222222222 345789999998631 122333344443322 23456666654443221 12334
Q ss_pred cccccccCCChHHHHHHHhhh
Q 020066 251 PEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
.+ .+++++.++...++...
T Consensus 343 ~I--~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 343 KI--DITEPSIEETVQIINGL 361 (758)
T ss_pred EE--EeCCCCHHHHHHHHHHH
Confidence 67 89999999999999864
No 129
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.99 E-value=0.0024 Score=62.31 Aligned_cols=128 Identities=9% Similarity=0.059 Sum_probs=71.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
..-+.++|.+|+|||+||+.+++. ....| +.+..+.-+... .....+...+.....+.+++|+||++...
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~k 291 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTK 291 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhcc
Confidence 445778999999999999999984 33333 112111111100 11222223333334467899999987431
Q ss_pred --------CHH---hHHHHHHhhcC--CCCCCcEEEEecCCchHHhh--c--c-CCccccccccCCChHHHHHHHhhhC
Q 020066 212 --------NDD---NLANLRLLVTN--MDLVGFYVLVTTQSRSVATM--M--K-QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 --------~~~---~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~~--~--~-~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+.. ....+...+.. .. .+..||.||...+.... . + ....+ .+.+.+.++-.++|..+.
T Consensus 292 R~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-~~V~VI~ATNr~d~LDpaLlRpGRfd~~I--~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 292 RYDATSGGEKEIQRTMLELLNQLDGFDSR-GDVKVIMATNRIESLDPALIRPGRIDRKI--EFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHhhhccc-CCeEEEEecCChHHhhHHhccCCeeEEEE--EeCCCCHHHHHHHHHHHH
Confidence 000 11222323321 22 46678888876654322 1 1 12356 789999999999998764
No 130
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0054 Score=60.02 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=79.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
.+.-+-+.|.+|+|||+||..+..+ +.|+.+ .+-.+-+.. .....+...+...-+..-..||+||+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFv---KiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiEr 609 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS----SDFPFV---KIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIER 609 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh----cCCCeE---EEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhh
Confidence 4555667899999999999988763 456533 222222222 2334445555566677788999999865
Q ss_pred CCHHhHH------------HHHHhhcCCCCCC--cEEEEecCCchHHhhccC----CccccccccCCCh-HHHHHHHhhh
Q 020066 211 LNDDNLA------------NLRLLVTNMDLVG--FYVLVTTQSRSVATMMKQ----TVPEAEHLIYFSE-SNSWSNLNCE 271 (331)
Q Consensus 211 ~~~~~~~------------~l~~~l~~~~~~g--s~IIvTTR~~~va~~~~~----~~~~~~~l~~L~~-~~s~~Lf~~~ 271 (331)
.-+|- .|+-.+....-+| --|+-||....|...|+- ...| .++.|+. ++..+.++..
T Consensus 610 --LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i--~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 610 --LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTI--HVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred --hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhhee--ecCccCchHHHHHHHHHc
Confidence 22332 2222222211033 345667777778888873 2367 8888877 7778888775
Q ss_pred C-CCCC
Q 020066 272 L-PPSS 276 (331)
Q Consensus 272 a-f~~~ 276 (331)
- |.++
T Consensus 686 n~fsd~ 691 (744)
T KOG0741|consen 686 NIFSDD 691 (744)
T ss_pred cCCCcc
Confidence 4 5544
No 131
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.92 E-value=0.007 Score=52.65 Aligned_cols=99 Identities=12% Similarity=0.052 Sum_probs=56.4
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEE-eCCCC------------CccccHHHHHHHHHhccCCceeEEEE
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFS-VGKIL------------DLSTVMNVITIRCKEIPSSEMLLIAL 205 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~------------~~~~~~~~l~~~l~~~l~~kr~LlVL 205 (331)
+|.|+|..|+||||++..+...- ..+....+++. -...+ ....+.......+...+...+=++++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~--~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~ 80 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYI--NKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILV 80 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh--hhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEE
Confidence 68899999999999998766531 11112222210 00000 00011223444566666666789999
Q ss_pred eCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh
Q 020066 206 DGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM 245 (331)
Q Consensus 206 Ddvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~ 245 (331)
|.+.+ .+.......... .|-.++.|+...+++..
T Consensus 81 gEird--~e~~~~~l~~a~----~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 81 GEMRD--LETIRLALTAAE----TGHLVMSTLHTNSAAKT 114 (198)
T ss_pred cCCCC--HHHHHHHHHHHH----cCCEEEEEecCCcHHHH
Confidence 99976 333444333332 45568888887776554
No 132
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.92 E-value=0.0034 Score=51.73 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=25.1
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
++.|+|.+|+||||++..+...... .-..++|++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~ 38 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEE 38 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcc
Confidence 3678999999999999888664211 2234555554433
No 133
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.88 E-value=0.0064 Score=55.71 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=89.1
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEE-EEeCCCCCcc------ccHHHHHHHHHh
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIW-FSVGKILDLS------TVMNVITIRCKE 194 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~------~~~~~l~~~l~~ 194 (331)
.+.-|.+.+. ....+..-.+|++|.|||+-|..+...-...+.|.+++- .|+|..-... .+...+......
T Consensus 44 vV~~L~~a~~--~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~~~ 121 (346)
T KOG0989|consen 44 VVQVLKNALL--RRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLLKR 121 (346)
T ss_pred HHHHHHHHHh--hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhcccc
Confidence 4444455554 356788889999999999999887764434455766553 3444332211 222222222211
Q ss_pred cc--CCce-eEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEE-EecCCchHHhhc-cCCccccccccCCChHHHHHHHh
Q 020066 195 IP--SSEM-LLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVL-VTTQSRSVATMM-KQTVPEAEHLIYFSESNSWSNLN 269 (331)
Q Consensus 195 ~l--~~kr-~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~II-vTTR~~~va~~~-~~~~~~~~~l~~L~~~~s~~Lf~ 269 (331)
.. ..++ =.+|||++.....+.|..+...+.+.. ..++.| ||+--..+...+ ....-| +.++|.+++...-++
T Consensus 122 ~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-~~trFiLIcnylsrii~pi~SRC~Kf--rFk~L~d~~iv~rL~ 198 (346)
T KOG0989|consen 122 SDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-RTTRFILICNYLSRIIRPLVSRCQKF--RFKKLKDEDIVDRLE 198 (346)
T ss_pred ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-cceEEEEEcCChhhCChHHHhhHHHh--cCCCcchHHHHHHHH
Confidence 11 1123 378999999988899999998887655 666654 444322222222 223457 889999988888777
Q ss_pred hhCC
Q 020066 270 CELP 273 (331)
Q Consensus 270 ~~af 273 (331)
..+-
T Consensus 199 ~Ia~ 202 (346)
T KOG0989|consen 199 KIAS 202 (346)
T ss_pred HHHH
Confidence 7653
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.88 E-value=0.0076 Score=62.88 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=56.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc-------------c--ccHHHHHHHHHhccCCcee
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL-------------S--TVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-------------~--~~~~~l~~~l~~~l~~kr~ 201 (331)
..++-++|..|+|||+||+.+.... +...+.++.+.-.+. . .....+...++ .....
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~---~~p~~ 555 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVR---KHPHC 555 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHH---hCCCe
Confidence 4467899999999999999998742 122233333221110 0 11122333332 12346
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecC
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQ 238 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR 238 (331)
+++||++...+.+.++.|...+..+. ..++-||+||.
T Consensus 556 VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn 602 (731)
T TIGR02639 556 VLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSN 602 (731)
T ss_pred EEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCC
Confidence 99999999988888888888775431 02355777774
No 135
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.87 E-value=0.0062 Score=64.47 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=55.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc------------ccHHHHHHHHHhccCCc-eeEE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS------------TVMNVITIRCKEIPSSE-MLLI 203 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~------------~~~~~l~~~l~~~l~~k-r~Ll 203 (331)
...+.++|..|+|||+||+.+.+... . .-...+.+..+.-.... ...+. ...+.+.++.+ .-+|
T Consensus 598 ~~~~Lf~Gp~G~GKT~lA~aLa~~l~-~-~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vL 674 (857)
T PRK10865 598 IGSFLFLGPTGVGKTELCKALANFMF-D-SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVI 674 (857)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhh-c-CCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeE
Confidence 34778999999999999999986321 1 11122233322111100 00000 01122222222 3599
Q ss_pred EEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCC
Q 020066 204 ALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQS 239 (331)
Q Consensus 204 VLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~ 239 (331)
+||++...+...++.+...+..+. ...+-||+||..
T Consensus 675 llDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 675 LLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred EEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 999999888888888887775431 023347888865
No 136
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.85 E-value=0.0089 Score=51.28 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=34.9
Q ss_pred HHHhccCCceeEEEEeC----CCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhcc
Q 020066 191 RCKEIPSSEMLLIALDG----LCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMK 247 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDd----vw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~ 247 (331)
.+.+.+-+++-+|+-|. ++. ...|+-+...-.-+. .|+.||++|.+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp--~~s~~im~lfeeinr-~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDP--DLSWEIMRLFEEINR-LGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCCh--HHHHHHHHHHHHHhh-cCcEEEEEeccHHHHHhcc
Confidence 34455567788888884 433 234654432222245 7999999999999877664
No 137
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.85 E-value=0.019 Score=54.26 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=54.1
Q ss_pred CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHHHHHhhh
Q 020066 197 SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 197 ~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
.+++-++|+|++...+...++.++..+-.-. +++.+|++|.+.+ +. +..+....+ .+.+++.++..+.+...
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~LLpTI~SRcq~i--~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPP-PGTVFLLVSARIDRLLPTILSRCRQF--PMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCC-cCcEEEEEECChhhCcHHHHhcCEEE--EecCCCHHHHHHHHHHc
Confidence 4556688999999988899999998887655 6777666666544 33 333445677 89999999999888765
No 138
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0098 Score=50.33 Aligned_cols=105 Identities=16% Similarity=0.052 Sum_probs=58.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEE------------------eCCCCCcc-----c----cHHHHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFS------------------VGKILDLS-----T----VMNVIT 189 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------------------vs~~~~~~-----~----~~~~l~ 189 (331)
-.+++|+|..|.|||||.+.++.-.. .....+++. +.+..... + .-+.-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~r 104 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQR 104 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHH
Confidence 35789999999999999999976321 111212110 11111110 0 011112
Q ss_pred HHHHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh
Q 020066 190 IRCKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM 245 (331)
Q Consensus 190 ~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~ 245 (331)
-.+...+-.++-+++||.-... +......+...+..-. .+..||++|.+.+....
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh
Confidence 2344556667889999986543 3333444444443333 45678888888776654
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.84 E-value=0.01 Score=62.88 Aligned_cols=117 Identities=12% Similarity=0.136 Sum_probs=65.9
Q ss_pred CCCC---cHHHHHHHHhcC-------CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----
Q 020066 118 ELEG---SVDSVKNALLRD-------GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----- 182 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----- 182 (331)
.++| .++.+.+.+... +.....+.++|..|+|||++|+.+.....- .-...+.++.+.-.+..
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~~~~l 643 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHSVARL 643 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccchHHHh
Confidence 3557 555555555431 122456779999999999999999763211 01111222222111100
Q ss_pred ----------ccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCC
Q 020066 183 ----------TVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQS 239 (331)
Q Consensus 183 ----------~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~ 239 (331)
.....+...++. ....+|+||++...+.+.++.|...+..+. ..++-||+||..
T Consensus 644 ~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 644 IGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred cCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 111222232222 223499999999988888998888775431 033458888865
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.83 E-value=0.0066 Score=64.37 Aligned_cols=147 Identities=13% Similarity=0.120 Sum_probs=77.7
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc---cCCC-cCceEE-EEeCCCC---CccccHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD---IVSR-FPRHIW-FSVGKIL---DLSTVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~w-v~vs~~~---~~~~~~~ 186 (331)
.++| +..++++.|... ...-+.++|.+|+|||++|+.+...-. +... ....+| +.++.-. ......+
T Consensus 174 ~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e 251 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFE 251 (852)
T ss_pred cCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHH
Confidence 4668 777778777643 233344799999999999998876421 1111 123344 2222111 1111222
Q ss_pred -HHHHHHHhccC-CceeEEEEeCCCCCC--------HHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhc-------cCC
Q 020066 187 -VITIRCKEIPS-SEMLLIALDGLCDLN--------DDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMM-------KQT 249 (331)
Q Consensus 187 -~l~~~l~~~l~-~kr~LlVLDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~-------~~~ 249 (331)
.+...+...-+ +++.+|++|++..-. .+.-+.++..+.. ..-++|-+|..+..-..+ ...
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~---g~i~~IgaTt~~e~r~~~~~d~al~rRf 328 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR---GELHCIGATTLDEYRKYIEKDAALERRF 328 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc---CceEEEEeCcHHHHHHHhhcCHHHHhcC
Confidence 22222222212 468999999987421 1122233333321 224555555544432211 123
Q ss_pred ccccccccCCChHHHHHHHhhh
Q 020066 250 VPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
..+ .+...+.++...++...
T Consensus 329 ~~i--~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 329 QPV--FVDEPTVEDTISILRGL 348 (852)
T ss_pred CEE--EeCCCCHHHHHHHHHHH
Confidence 456 78888999999988754
No 141
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.038 Score=52.13 Aligned_cols=143 Identities=12% Similarity=0.017 Sum_probs=86.4
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCC-------------------CcCceEEEEeCCC-CCcc-c
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS-------------------RFPRHIWFSVGKI-LDLS-T 183 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs~~-~~~~-~ 183 (331)
.+.+.+.. +.-..-+-+.|..|+||+++|..+...--... ..+...++.-... ..+. +
T Consensus 13 ~l~~~~~~-~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~id 91 (334)
T PRK07993 13 QLVGSYQA-GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVD 91 (334)
T ss_pred HHHHHHHc-CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHH
Confidence 44444442 23345677899999999999987643211110 1111223321111 1111 2
Q ss_pred cHHHHHHHHHh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCC
Q 020066 184 VMNVITIRCKE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFS 260 (331)
Q Consensus 184 ~~~~l~~~l~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~ 260 (331)
....+...+.. -..+++=++|+|++...+...-+.|+..+-.-. .++.+|++|.+.+ +. +..+....+ .+.+++
T Consensus 92 qiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpTIrSRCq~~--~~~~~~ 168 (334)
T PRK07993 92 AVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPP-ENTWFFLACREPARLLATLRSRCRLH--YLAPPP 168 (334)
T ss_pred HHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHHHHhccccc--cCCCCC
Confidence 33333333332 234667789999999888888889988886655 6777777776644 44 334455677 899999
Q ss_pred hHHHHHHHhhh
Q 020066 261 ESNSWSNLNCE 271 (331)
Q Consensus 261 ~~~s~~Lf~~~ 271 (331)
.++....+...
T Consensus 169 ~~~~~~~L~~~ 179 (334)
T PRK07993 169 EQYALTWLSRE 179 (334)
T ss_pred HHHHHHHHHHc
Confidence 99998877654
No 142
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.043 Score=51.34 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=82.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCC------------------CcCceEEEEeCCCCCccccHHHHH---HHHHh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVS------------------RFPRHIWFSVGKILDLSTVMNVIT---IRCKE 194 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------~F~~~~wv~vs~~~~~~~~~~~l~---~~l~~ 194 (331)
-...+-+.|..|+||+++|+.+...--..+ ..+...|+.-..... ....+++. ..+..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~-~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK-SITVEQIRQCNRLAQE 102 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC-cCCHHHHHHHHHHHhh
Confidence 345778999999999999988754211110 111122332211000 01233332 23222
Q ss_pred c-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-H-HhhccCCccccccccCCChHHHHHHHhhh
Q 020066 195 I-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-V-ATMMKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 195 ~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-v-a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
. ..+++=++|+|++...+....+.++..+-.-. +++.+|++|.+.+ + .+..+....+ .+.+++.++..+.+...
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~t~fiL~t~~~~~lLpTI~SRCq~~--~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNESASNALLKTLEEPA-PNCLFLLVTHNQKRLLPTIVSRCQQW--VVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred CcccCCceEEEecchhhhCHHHHHHHHHHhcCCC-CCeEEEEEECChhhChHHHHhcceeE--eCCCCCHHHHHHHHHHc
Confidence 2 23455688999999988888999988887655 6777777766654 3 3444456678 99999999999888764
No 143
>PTZ00202 tuzin; Provisional
Probab=96.82 E-value=0.023 Score=55.10 Aligned_cols=145 Identities=12% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCCCCCC---cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--------
Q 020066 115 AETELEG---SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-------- 182 (331)
Q Consensus 115 ~~~~~vG---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-------- 182 (331)
+...|+| +...|...|... ....+++.|.|++|+|||||++.+..... + .+++..+..+...
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNprg~eElLr~LL~AL 333 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVRGTEDTLRSVVKAL 333 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCCCHHHHHHHHHHHc
Confidence 4456888 667777666533 23356899999999999999999886432 1 1333222222111
Q ss_pred -----cc----HHHHHHHHHhc-cC-CceeEEEEeCCCCCCHHhHHHHH---HhhcCCCCCCcEEEEecCCchHHhh---
Q 020066 183 -----TV----MNVITIRCKEI-PS-SEMLLIALDGLCDLNDDNLANLR---LLVTNMDLVGFYVLVTTQSRSVATM--- 245 (331)
Q Consensus 183 -----~~----~~~l~~~l~~~-l~-~kr~LlVLDdvw~~~~~~~~~l~---~~l~~~~~~gs~IIvTTR~~~va~~--- 245 (331)
.. ...+...+.+. .. +++.+||+-= .+. +.+..+. -.+.+.. .-|.|++---.+.+...
T Consensus 334 GV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg--~~l~rvyne~v~la~dr-r~ch~v~evpleslt~~~~~ 409 (550)
T PTZ00202 334 GVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKL-REG--SSLQRVYNEVVALACDR-RLCHVVIEVPLESLTIANTL 409 (550)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCC--CcHHHHHHHHHHHHccc-hhheeeeeehHhhcchhccc
Confidence 11 23333333322 23 6677777763 222 1222221 1233344 55777776554443211
Q ss_pred ccCCccccccccCCChHHHHHHHhhh
Q 020066 246 MKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 246 ~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
...-+.| -+.+++.++|...-.+.
T Consensus 410 lprldf~--~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 410 LPRLDFY--LVPNFSRSQAFAYTQHA 433 (550)
T ss_pred CccceeE--ecCCCCHHHHHHHHhhc
Confidence 1122456 78888888887765543
No 144
>PRK07667 uridine kinase; Provisional
Probab=96.81 E-value=0.0018 Score=56.16 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 123 VDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+.|.+.+....+...+|+|-|.+|+||||||+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45677767655566689999999999999999998773
No 145
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.81 E-value=0.0095 Score=52.73 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||...+..
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999988864
No 146
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.81 E-value=0.014 Score=57.81 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=70.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
.+-|-++|.+|+|||.+|+.+.+.-. -.| +-+..+.-++.. .+...+...+...-...+++|++|++...
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~ 333 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSN 333 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhcc
Confidence 45577999999999999999988422 121 112222212111 22233333333333457999999998631
Q ss_pred -----CHHhHHH----HHHhhcCCCCCCcEEEEecCCchH-Hhhc---cC-CccccccccCCChHHHHHHHhhhC
Q 020066 212 -----NDDNLAN----LRLLVTNMDLVGFYVLVTTQSRSV-ATMM---KQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -----~~~~~~~----l~~~l~~~~~~gs~IIvTTR~~~v-a~~~---~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+...-.. +...+.... .+--||.||.+.+- -..+ |. ...+ .+..-+.++-.++|+.+.
T Consensus 334 ~~~~~d~~~~~rvl~~lL~~l~~~~-~~V~vIaTTN~~~~Ld~allR~GRFD~~i--~v~lP~~~eR~~Il~~~l 405 (489)
T CHL00195 334 SESKGDSGTTNRVLATFITWLSEKK-SPVFVVATANNIDLLPLEILRKGRFDEIF--FLDLPSLEEREKIFKIHL 405 (489)
T ss_pred ccCCCCchHHHHHHHHHHHHHhcCC-CceEEEEecCChhhCCHHHhCCCcCCeEE--EeCCcCHHHHHHHHHHHH
Confidence 1111122 222333233 44456667765542 1111 22 2356 788888888889988765
No 147
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.79 E-value=0.01 Score=48.89 Aligned_cols=98 Identities=11% Similarity=0.074 Sum_probs=57.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE------EeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF------SVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDL 211 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~ 211 (331)
.+++|+|..|.|||||++.+..-.. .....+|+ ...... +.-+.-.-.+...+-.++-++++|+--..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~~i~~~~~l---S~G~~~rv~laral~~~p~illlDEP~~~ 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTVKIGYFEQL---SGGEKMRLALAKLLLENPNLLLLDEPTNH 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeEEEEEEccC---CHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence 5789999999999999999976432 22223332 111111 11222233355566667889999986543
Q ss_pred -CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 212 -NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 212 -~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
+......+...+..- +..||++|.+.+.+.
T Consensus 101 LD~~~~~~l~~~l~~~---~~til~~th~~~~~~ 131 (144)
T cd03221 101 LDLESIEALEEALKEY---PGTVILVSHDRYFLD 131 (144)
T ss_pred CCHHHHHHHHHHHHHc---CCEEEEEECCHHHHH
Confidence 344445555555422 246888887766543
No 148
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.79 E-value=0.0071 Score=64.04 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=77.6
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc---cCCC-cCceEE-EEeCCCCCcc---ccHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD---IVSR-FPRHIW-FSVGKILDLS---TVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~w-v~vs~~~~~~---~~~~ 186 (331)
.++| +..++++.|... ...-+.++|.+|+|||+||+.+...-- +... ....+| +..+.-.... ...+
T Consensus 179 ~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e 256 (857)
T PRK10865 179 PVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFE 256 (857)
T ss_pred cCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhH
Confidence 4668 777888888743 333455899999999999998876421 1111 123333 3333221111 1222
Q ss_pred -HHHHHHHhc-cCCceeEEEEeCCCCCC--------HHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhc-------cCC
Q 020066 187 -VITIRCKEI-PSSEMLLIALDGLCDLN--------DDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMM-------KQT 249 (331)
Q Consensus 187 -~l~~~l~~~-l~~kr~LlVLDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~-------~~~ 249 (331)
.+...+.+. -.+++.+|++|++..-. .+.-+.++..+..+ .-++|-+|..++....+ ...
T Consensus 257 ~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g---~l~~IgaTt~~e~r~~~~~d~al~rRf 333 (857)
T PRK10865 257 ERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG---ELHCVGATTLDEYRQYIEKDAALERRF 333 (857)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC---CCeEEEcCCCHHHHHHhhhcHHHHhhC
Confidence 222223222 13568999999986521 11223344444322 34566565555432111 122
Q ss_pred ccccccccCCChHHHHHHHhhh
Q 020066 250 VPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
..+ .+...+.++...++...
T Consensus 334 ~~i--~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 334 QKV--FVAEPSVEDTIAILRGL 353 (857)
T ss_pred CEE--EeCCCCHHHHHHHHHHH
Confidence 334 46666888888888654
No 149
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.79 E-value=0.0034 Score=51.01 Aligned_cols=79 Identities=16% Similarity=0.083 Sum_probs=42.5
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceE-EEEeCCCCCcc-----ccHHHHHHHHHh-cc---CCceeEEEEeCCC
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHI-WFSVGKILDLS-----TVMNVITIRCKE-IP---SSEMLLIALDGLC 209 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~-----~~~~~l~~~l~~-~l---~~kr~LlVLDdvw 209 (331)
|-++|..|+|||+||+.++..- +..+ -+.++...+.. .........+.. .+ -.+..++|||++.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 4589999999999999998732 2222 23444433322 000000000000 00 0168899999998
Q ss_pred CCCHHhHHHHHHhhc
Q 020066 210 DLNDDNLANLRLLVT 224 (331)
Q Consensus 210 ~~~~~~~~~l~~~l~ 224 (331)
..+...+..|...+.
T Consensus 76 ~a~~~v~~~L~~ll~ 90 (139)
T PF07728_consen 76 RAPPEVLESLLSLLE 90 (139)
T ss_dssp G--HHHHHTTHHHHS
T ss_pred cCCHHHHHHHHHHHh
Confidence 766666666666653
No 150
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.78 E-value=0.0098 Score=50.44 Aligned_cols=103 Identities=11% Similarity=0.046 Sum_probs=56.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE------------------EeCCCCCcc---------ccHHHHHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF------------------SVGKILDLS---------TVMNVITI 190 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------------------~vs~~~~~~---------~~~~~l~~ 190 (331)
.+++|+|..|+|||||.+.+..-.. .....+++ .+.+.+... +.-+.-.-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 4789999999999999999976321 11111111 112221111 11111222
Q ss_pred HHHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcC-CCCCCcEEEEecCCchHHh
Q 020066 191 RCKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTN-MDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~~gs~IIvTTR~~~va~ 244 (331)
.+...+-.++-+++||+-... +......+...+.. .. .|..||++|.+.+...
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 344556667789999986543 33333333333322 12 4667888888777654
No 151
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.037 Score=51.82 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=79.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCC----------------CcCceEEEEeCCCC-C----ccccHHHHHH---HH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVS----------------RFPRHIWFSVGKIL-D----LSTVMNVITI---RC 192 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----------------~F~~~~wv~vs~~~-~----~~~~~~~l~~---~l 192 (331)
..-+-+.|..|+||+++|..+.+.--... ......|+...... . .....+++.. .+
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~ 105 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKL 105 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHH
Confidence 44678899999999999977754221111 11123334211110 0 0112333332 22
Q ss_pred Hh-ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHHHHHh
Q 020066 193 KE-IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSWSNLN 269 (331)
Q Consensus 193 ~~-~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~~Lf~ 269 (331)
.. -..+++-++|+|++...+...-+.|+..+-.-. .++.+|++|.+.+ +. +..+....+ .+.+++.++....+.
T Consensus 106 ~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp-~~~~fiL~~~~~~~lLpTIrSRCq~i--~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 106 ALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPS-PGRYLWLISAQPARLPATIRSRCQRL--EFKLPPAHEALAWLL 182 (319)
T ss_pred hhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCC-CCCeEEEEECChhhCchHHHhhheEe--eCCCcCHHHHHHHHH
Confidence 22 234566789999999887777788887776555 6777777776544 33 333445677 899999999988887
Q ss_pred hh
Q 020066 270 CE 271 (331)
Q Consensus 270 ~~ 271 (331)
..
T Consensus 183 ~~ 184 (319)
T PRK08769 183 AQ 184 (319)
T ss_pred Hc
Confidence 64
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.0011 Score=62.17 Aligned_cols=97 Identities=11% Similarity=0.092 Sum_probs=51.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCDLN 212 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~ 212 (331)
.-+.++|..|+|||.||..+.+... ...+ .+++++...-++.. ......... .+.+. .-=||||||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g~-~V~y~t~~~l~~~l~~~~~~~~~~~~~~-~~~l~-~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRGK-SVIYRTADELIEILREIRFNNDKELEEV-YDLLI-NCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCCC-eEEEEEHHHHHHHHHHHHhccchhHHHH-HHHhc-cCCEEEEeccCCCC
Confidence 5688999999999999999988532 2222 45565543322111 000000000 11222 23489999996653
Q ss_pred HHhHH--HHHHhhcC-CCCCCcEEEEecCC
Q 020066 213 DDNLA--NLRLLVTN-MDLVGFYVLVTTQS 239 (331)
Q Consensus 213 ~~~~~--~l~~~l~~-~~~~gs~IIvTTR~ 239 (331)
...|. .+..-+.. -. .+..+||||..
T Consensus 260 ~t~~~~~~Lf~iin~R~~-~~k~tIiTSNl 288 (329)
T PRK06835 260 ITEFSKSELFNLINKRLL-RQKKMIISTNL 288 (329)
T ss_pred CCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 33342 22222221 12 35578999874
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.76 E-value=0.0071 Score=63.96 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=65.6
Q ss_pred CCCC---cHHHHHHHHhcC-------CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC---------
Q 020066 118 ELEG---SVDSVKNALLRD-------GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI--------- 178 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--------- 178 (331)
.++| .++.+.+.+... .....++.++|..|+|||.||+.+...- -......+=++.+.-
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~~~~~~l 644 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEAHTVSRL 644 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhhhhhccc
Confidence 4457 555665655321 2345578899999999999998776531 111111111111110
Q ss_pred ----CCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCC
Q 020066 179 ----LDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQS 239 (331)
Q Consensus 179 ----~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~ 239 (331)
+... .....+...+++ ....+|+||++...+...++.|...+..+. ..++-||+||..
T Consensus 645 ~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 645 KGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred cCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 0000 111223333332 445799999999888888888877765431 034667788753
No 154
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.75 E-value=0.0034 Score=51.18 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=52.7
Q ss_pred EEEEEecCCchhHHHHHHHhhcccc-CCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHH
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDI-VSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLA 217 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~ 217 (331)
-|-|.|-.|+||+++|+.++....- ...|...-.. + .. .+.+.. . +.--|+|+|+..-+.....
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~------~--~~----~~~l~~-a--~~gtL~l~~i~~L~~~~Q~ 87 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCA------S--LP----AELLEQ-A--KGGTLYLKNIDRLSPEAQR 87 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHH------C--TC----HHHHHH-C--TTSEEEEECGCCS-HHHHH
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechh------h--Cc----HHHHHH-c--CCCEEEECChHHCCHHHHH
Confidence 3568999999999999999875322 1223211000 0 11 112222 2 4556789999988777777
Q ss_pred HHHHhhcCC-CCCCcEEEEecCC
Q 020066 218 NLRLLVTNM-DLVGFYVLVTTQS 239 (331)
Q Consensus 218 ~l~~~l~~~-~~~gs~IIvTTR~ 239 (331)
.+...+... . ...|+|.||+.
T Consensus 88 ~L~~~l~~~~~-~~~RlI~ss~~ 109 (138)
T PF14532_consen 88 RLLDLLKRQER-SNVRLIASSSQ 109 (138)
T ss_dssp HHHHHHHHCTT-TTSEEEEEECC
T ss_pred HHHHHHHhcCC-CCeEEEEEeCC
Confidence 777777643 4 67899999974
No 155
>PRK06696 uridine kinase; Validated
Probab=96.75 E-value=0.0019 Score=57.29 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 124 DSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 124 ~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++|.+.+... .+...+|+|.|.+|+||||||+.+...
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 4455555532 456789999999999999999998863
No 156
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.75 E-value=0.0045 Score=60.29 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999999853
No 157
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.022 Score=53.56 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=75.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCC--------------------CcCceEEEEeCCC--------CCcc-ccHHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVS--------------------RFPRHIWFSVGKI--------LDLS-TVMNV 187 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs~~--------~~~~-~~~~~ 187 (331)
..-+-++|..|+||||+|+.+...-.... ......++.-... ..+. +....
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 44677999999999999988765321100 0011222221110 0000 22223
Q ss_pred HHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhc-cCCccccccccCCChHHH
Q 020066 188 ITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMM-KQTVPEAEHLIYFSESNS 264 (331)
Q Consensus 188 l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~-~~~~~~~~~l~~L~~~~s 264 (331)
+...+... ..+++-++|+|++...+...-+.+...+.... .++.+|++|.+.+ +...+ .....+ .+.+++.++.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-~~~~~Ilvth~~~~ll~ti~SRc~~~--~~~~~~~~~~ 177 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-PQVVFLLVSHAADKVLPTIKSRCRKM--VLPAPSHEEA 177 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-CCCEEEEEeCChHhChHHHHHHhhhh--cCCCCCHHHH
Confidence 33333322 12444455678888877767777777665544 5666777777655 43332 234577 8999999999
Q ss_pred HHHHhhh
Q 020066 265 WSNLNCE 271 (331)
Q Consensus 265 ~~Lf~~~ 271 (331)
.+.+...
T Consensus 178 ~~~L~~~ 184 (325)
T PRK08699 178 LAYLRER 184 (325)
T ss_pred HHHHHhc
Confidence 8877664
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.71 E-value=0.0077 Score=63.05 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=77.9
Q ss_pred cHHHHHHHHhcC----CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------ccHH
Q 020066 122 SVDSVKNALLRD----GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------TVMN 186 (331)
Q Consensus 122 ~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------~~~~ 186 (331)
-+++|+++|... ...-.++.++|.+|+||||+++.+... ....|-. ++.+...+.. ....
T Consensus 330 vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~~---i~~~~~~d~~~i~g~~~~~~g~~~G 404 (784)
T PRK10787 330 VKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYVR---MALGGVRDEAEIRGHRRTYIGSMPG 404 (784)
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEEE---EEcCCCCCHHHhccchhccCCCCCc
Confidence 666777777532 234467899999999999999999873 2222311 2222211110 0111
Q ss_pred HHHHHHHhccCCceeEEEEeCCCCCCHH----hHHHHHHhhcCC--------------CCCCcEEEEecCCchHHh-hcc
Q 020066 187 VITIRCKEIPSSEMLLIALDGLCDLNDD----NLANLRLLVTNM--------------DLVGFYVLVTTQSRSVAT-MMK 247 (331)
Q Consensus 187 ~l~~~l~~~l~~kr~LlVLDdvw~~~~~----~~~~l~~~l~~~--------------~~~gs~IIvTTR~~~va~-~~~ 247 (331)
.+...+... ....-+++||.+...... ..+.+...+..+ ...+.-+|.|+.+..+.. ..+
T Consensus 405 ~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~ 483 (784)
T PRK10787 405 KLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLD 483 (784)
T ss_pred HHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhc
Confidence 222223222 223457899998764321 134444444321 102233444554333221 123
Q ss_pred CCccccccccCCChHHHHHHHhhhCC
Q 020066 248 QTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 248 ~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
...++ .+.+++.++-.++.+++..
T Consensus 484 R~~ii--~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 484 RMEVI--RLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ceeee--ecCCCCHHHHHHHHHHhhh
Confidence 34578 8999999999999888764
No 159
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.011 Score=50.22 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=57.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhcccc-CCC--cC------------ceEEEEeCCCCCcc------c----c-HHHHHHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDI-VSR--FP------------RHIWFSVGKILDLS------T----V-MNVITIR 191 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~------------~~~wv~vs~~~~~~------~----~-~~~l~~~ 191 (331)
.+++|+|..|+|||||.+.+...... ... |+ ..+.. +.+..... + + -+...-.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~-~~q~~~~~~~~tv~~~~~LS~G~~qrv~ 105 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGY-LPEEPSLYENLTVRENLKLSGGMKQRLA 105 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEE-EecCCccccCCcHHHHhhcCHHHHHHHH
Confidence 47899999999999999999763211 000 10 11111 12221111 1 1 1112223
Q ss_pred HHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcCC-CCCCcEEEEecCCchHHh
Q 020066 192 CKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTNM-DLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 192 l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IIvTTR~~~va~ 244 (331)
+...+-.++-++++|+--.. +......+...+..- . .|..||++|.+.....
T Consensus 106 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~~~~~ 159 (173)
T cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHHHHH
Confidence 55566778889999986543 333334444443321 2 4567888888877554
No 160
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.68 E-value=0.0034 Score=57.25 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=29.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCc-eEEEEeCCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-HIWFSVGKILD 180 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~ 180 (331)
..++|+|-.|+|||||++.+++. ++.+|+. .+++.+.+...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcH
Confidence 45889999999999999999984 4434543 44555655543
No 161
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.66 E-value=0.01 Score=50.59 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=56.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEE---eCCCCCc-------------------c----------ccH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFS---VGKILDL-------------------S----------TVM 185 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~~-------------------~----------~~~ 185 (331)
.+++|+|..|+|||||.+.++.-. ......+++. +.. .+. . +.-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 578999999999999999998632 2222333221 111 000 0 111
Q ss_pred HHHHHHHHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCC-CcEEEEecCCchHH
Q 020066 186 NVITIRCKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTNMDLV-GFYVLVTTQSRSVA 243 (331)
Q Consensus 186 ~~l~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~-gs~IIvTTR~~~va 243 (331)
+.-.-.+...+-..+-+++||.--.. +....+.+...+..-... |..||++|.+.+..
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 11222344455567889999986542 333344444443321102 67888888876654
No 162
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.64 E-value=0.0007 Score=64.19 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=83.9
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE-EeCCCCCcc--------------ccHHHHHHHHHhccCCc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF-SVGKILDLS--------------TVMNVITIRCKEIPSSE 199 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs~~~~~~--------------~~~~~l~~~l~~~l~~k 199 (331)
...+.+.++|.|||||||++-.+.. +...|..-.|+ ...+..+.. .+-+.....+.....++
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 3568899999999999999977765 45567554443 333222222 11233444667778889
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhccCCccccccccCCChH-HHHHHHhhhC
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMKQTVPEAEHLIYFSES-NSWSNLNCEL 272 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~~~~~~~~~l~~L~~~-~s~~Lf~~~a 272 (331)
|.++|+||..+. .+.-..+.-.+..++ +.-.|+.|+|... .......+ .+.+|+.. ++-++|...+
T Consensus 89 r~llvldncehl-~~~~a~~i~all~~~-~~~~~~atsre~~---l~~ge~~~--~~~~L~~~d~a~~lf~~ra 155 (414)
T COG3903 89 RALLVLDNCEHL-LDACAALIVALLGAC-PRLAILATSREAI---LVAGEVHR--RVPSLSLFDEAIELFVCRA 155 (414)
T ss_pred hHHHHhcCcHHH-HHHHHHHHHHHHccc-hhhhhHHHhHhhh---cccccccc--cCCccccCCchhHHHHHHH
Confidence 999999997542 233344555666666 6778899998543 22334456 78888765 6888888766
No 163
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.62 E-value=0.012 Score=50.15 Aligned_cols=104 Identities=12% Similarity=-0.026 Sum_probs=57.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhcccc-CCC--cC------------c-eEEEEeCCCCCcc------------ccHHHHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDI-VSR--FP------------R-HIWFSVGKILDLS------------TVMNVIT 189 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~------------~-~~wv~vs~~~~~~------------~~~~~l~ 189 (331)
.+++|+|..|+|||||++.+..-... ... |+ . ..++ .+.+... +.-+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~--~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL--NQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE--ccCCeeecccHHHhhcccCCHHHHHH
Confidence 47899999999999999999764211 110 11 1 1122 2221111 1112222
Q ss_pred HHHHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 190 IRCKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 190 ~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
-.+...+-.++-+++||.-... +....+.+...+..-. .|..||++|.+.....
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~ 161 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH
Confidence 3344556677889999987653 3333344444443333 4667888888877654
No 164
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.61 E-value=0.0065 Score=53.99 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=31.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILD 180 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~ 180 (331)
.-.++.|+|.+|+|||+|+..++-....... -..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~ 66 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR 66 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcC
Confidence 3468899999999999999888643222221 25678888766554
No 165
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.60 E-value=0.02 Score=60.58 Aligned_cols=97 Identities=9% Similarity=0.080 Sum_probs=56.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC-------------cc--ccHHHHHHHHHhccCCce-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD-------------LS--TVMNVITIRCKEIPSSEM- 200 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-------------~~--~~~~~l~~~l~~~l~~kr- 200 (331)
...+-++|..|+|||+||+.+.+.-.... ...+-+..+.-.+ .. .....+ .+.+..++
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l----~~~~~~~p~ 612 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQL----TEAVRKKPY 612 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhccccccHHHhcCCCCcccCcCccchH----HHHHHhCCC
Confidence 34567899999999999988876311000 1111222221100 00 111223 33333344
Q ss_pred eEEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCC
Q 020066 201 LLIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQS 239 (331)
Q Consensus 201 ~LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~ 239 (331)
.+++||++...+.+.++.|+..+..+. ...+-||+||..
T Consensus 613 ~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 613 TVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred eEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 589999999988888888888776531 145667777764
No 166
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.024 Score=48.46 Aligned_cols=104 Identities=13% Similarity=0.019 Sum_probs=56.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE------EeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF------SVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv------~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
-.+++|+|..|+|||||.+.+..-. ......+++ .+.+.... +.-+.-.-.+...+-.++-+++||.--.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~L-SgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYIDL-SGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCCC-CHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 3589999999999999999987632 122222221 12222221 1122223335555666788999998644
Q ss_pred C-CHHhHHHHHHhhcCC-CCCCcEEEEecCCchHHh
Q 020066 211 L-NDDNLANLRLLVTNM-DLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 211 ~-~~~~~~~l~~~l~~~-~~~gs~IIvTTR~~~va~ 244 (331)
. +......+...+... ...+..||++|.+.....
T Consensus 101 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 101 YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 2 333333333333221 102356777777766444
No 167
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.58 E-value=0.037 Score=45.77 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=66.9
Q ss_pred hhHHHHH-HHHHHHHHHHH-H---HHh-hChhhHHHHHHHHHHHHHHHHHHHhccCc---c--hHHHHHHHhHhhhhhhh
Q 020066 2 ADKVAEL-LDLVCGRLDSN-A---RAF-WNNRGMKNLRVSLRKLHNLLRNVREDAIP---N--YLLTDLNGIASDVDGLI 70 (331)
Q Consensus 2 a~a~vs~-v~~l~~kl~~~-~---~~~-~~~~~l~~L~~~L~~i~~~l~~ae~~~~~---~--~Wl~~lr~~~yd~eD~l 70 (331)
|+.+.+| ++.+++.|... . ... .++.-+++|...+..|.+++++.+.-... . .-+++|.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 3444444 55555555555 2 222 24588899999999999999988774321 1 18999999999999999
Q ss_pred hhhhh-hccc-hhhHHHHHHHHHHHHHHHHHH
Q 020066 71 DAPME-VSNY-KEVMRIRERLVRSMDSLKKIV 100 (331)
Q Consensus 71 d~~~~-~~~~-~~~~~~~~~i~~i~~~l~~i~ 100 (331)
+.|.+ ++.+ .-.++.+++|+++.+.+....
T Consensus 83 ~k~sk~~r~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 83 EKCSKVRRWNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHhccccHHHHHhhHhHHHHHHHHHHHHHHHh
Confidence 99973 1111 124556777777777776654
No 168
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.58 E-value=0.054 Score=50.66 Aligned_cols=150 Identities=11% Similarity=0.029 Sum_probs=87.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc-------------CCCcCceEEEEeC---CC
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI-------------VSRFPRHIWFSVG---KI 178 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs---~~ 178 (331)
.++| -.+.+.+.+.. +.-.+..-++|..|+||+++|..+.+.--. ...++...|+.-. +.
T Consensus 5 ~iiGq~~~~~~L~~~i~~-~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQ-NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHh-CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 3456 33344444442 222467889999999999999776542111 1112333454321 00
Q ss_pred CC----------------cc---ccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecC
Q 020066 179 LD----------------LS---TVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQ 238 (331)
Q Consensus 179 ~~----------------~~---~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR 238 (331)
.. .. +....+...+... ..+++-++|+|++...+....+.|+..+-.-. + +.+|++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~-~~fILi~~ 161 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-N-GTLILIAP 161 (314)
T ss_pred cccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-C-CeEEEEEC
Confidence 00 00 1222333333322 34667789999998888788888888875443 3 35555554
Q ss_pred Cc-hHH-hhccCCccccccccCCChHHHHHHHhhhC
Q 020066 239 SR-SVA-TMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 239 ~~-~va-~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+. .+. +..+.+..+ ++.++++++..+.+....
T Consensus 162 ~~~~Ll~TI~SRcq~i--~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 162 SPESLLPTIVSRCQII--PFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred ChHhCcHHHHhhceEE--ecCCCCHHHHHHHHHHhh
Confidence 43 333 333445678 999999999999999864
No 169
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.56 E-value=0.0021 Score=54.58 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=27.3
Q ss_pred CCC---cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 119 LEG---SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 119 ~vG---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
++| +.+++...|... ....+.+.|+|.+|+|||+|.+.++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 466 677777777321 5567899999999999999999888754
No 170
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.013 Score=57.43 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=55.5
Q ss_pred cHHHHHHHHhcC------CCC-cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHH
Q 020066 122 SVDSVKNALLRD------GST-VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIR 191 (331)
Q Consensus 122 ~~~~l~~~L~~~------~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~ 191 (331)
++++|++.|-+. ... ++=|-++|.+|.|||-||++|.....+- | |......|+.. .....+...
T Consensus 315 ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFdEm~VGvGArRVRdL 388 (752)
T KOG0734|consen 315 ELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFDEMFVGVGARRVRDL 388 (752)
T ss_pred HHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----EeccccchhhhhhcccHHHHHHH
Confidence 899999999865 233 3457789999999999999998865442 2 33334445533 222333333
Q ss_pred HHhccCCceeEEEEeCCCC
Q 020066 192 CKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 192 l~~~l~~kr~LlVLDdvw~ 210 (331)
+...-+.-+|.|.+|.++.
T Consensus 389 F~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 389 FAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred HHHHHhcCCeEEEEechhh
Confidence 4444455699999998865
No 171
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.015 Score=48.28 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=59.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC--c------------cccHHHHHHHHHhccCCceeEE
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD--L------------STVMNVITIRCKEIPSSEMLLI 203 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~------------~~~~~~l~~~l~~~l~~kr~Ll 203 (331)
.+++|+|..|.|||||.+.+..-. ......+++.-..... . .+.-+...-.+...+...+-++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 588999999999999999998632 2233334332111000 0 0112222333555566668899
Q ss_pred EEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhc
Q 020066 204 ALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 204 VLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~ 246 (331)
+||..-.. +......+...+......+..+|++|.+......+
T Consensus 103 ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 103 LLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 99987643 33333344433332110346788888877765543
No 172
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.54 E-value=0.0047 Score=58.46 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=43.7
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhc-----cCCceeEEEEeC
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEI-----PSSEMLLIALDG 207 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~-----l~~kr~LlVLDd 207 (331)
..+..++|+|..|+|||.+|+.+++...+ .| +-++.+.-++.. +....+...+... -++++++|++|+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~--~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI--EP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC--Ce---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 45678999999999999999999985332 22 222222222221 2233333333222 257899999999
Q ss_pred CCC
Q 020066 208 LCD 210 (331)
Q Consensus 208 vw~ 210 (331)
++.
T Consensus 221 IDA 223 (413)
T PLN00020 221 LDA 223 (413)
T ss_pred hhh
Confidence 863
No 173
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.50 E-value=0.011 Score=62.20 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=72.2
Q ss_pred cHHHHHHHHhcC----CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------ccHH
Q 020066 122 SVDSVKNALLRD----GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------TVMN 186 (331)
Q Consensus 122 ~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------~~~~ 186 (331)
-++.|.+++... ....+++.++|.+|+|||++|+.+.+.- ...|-. ++.+...+.. ....
T Consensus 328 ~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l--~~~~~~---i~~~~~~~~~~i~g~~~~~~g~~~g 402 (775)
T TIGR00763 328 VKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL--NRKFVR---FSLGGVRDEAEIRGHRRTYVGAMPG 402 (775)
T ss_pred HHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh--cCCeEE---EeCCCcccHHHHcCCCCceeCCCCc
Confidence 445555544321 2234578899999999999999998742 222211 1111111100 1112
Q ss_pred HHHHHHHhccCCceeEEEEeCCCCCCH----HhHHHHHHhhcC--------C------CCCCcEEEEecCCch-HH-hhc
Q 020066 187 VITIRCKEIPSSEMLLIALDGLCDLND----DNLANLRLLVTN--------M------DLVGFYVLVTTQSRS-VA-TMM 246 (331)
Q Consensus 187 ~l~~~l~~~l~~kr~LlVLDdvw~~~~----~~~~~l~~~l~~--------~------~~~gs~IIvTTR~~~-va-~~~ 246 (331)
.+...+.... .++-+|+||.+..... +....+...+.. . ...+.-+|.||...+ +. ...
T Consensus 403 ~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~ 481 (775)
T TIGR00763 403 RIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLL 481 (775)
T ss_pred hHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHh
Confidence 2233333332 2334789999876421 112233332221 0 001233445554332 11 122
Q ss_pred cCCccccccccCCChHHHHHHHhhhC
Q 020066 247 KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 ~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
....++ .+.+++.++-..+++++.
T Consensus 482 ~R~~vi--~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 482 DRMEVI--ELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCeeEE--ecCCCCHHHHHHHHHHHH
Confidence 334577 899999999988887754
No 174
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.50 E-value=0.018 Score=50.66 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 175
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.47 E-value=0.017 Score=60.33 Aligned_cols=128 Identities=13% Similarity=0.048 Sum_probs=71.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
.+-+-++|.+|+|||+||+.+.+.. ...| +.+..+.-.+.. .....+...+...-...+++|+||++...
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~--~~~f---i~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~ 561 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES--GANF---IAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPA 561 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc--CCCE---EEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhcc
Confidence 3447789999999999999998842 2222 122211111110 22333333334444566899999998531
Q ss_pred -----CH----HhHHHHHHhhcC--CCCCCcEEEEecCCchHHhh--c--c-CCccccccccCCChHHHHHHHhhhC
Q 020066 212 -----ND----DNLANLRLLVTN--MDLVGFYVLVTTQSRSVATM--M--K-QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -----~~----~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~~--~--~-~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+. .....++..+.. .. .+--||.||...+.... . + ....+ .+.+.+.++-.++|+.+.
T Consensus 562 r~~~~~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn~~~~ld~allRpgRfd~~i--~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 562 RGARFDTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATNRPDILDPALLRPGRFDRLI--LVPPPDEEARKEIFKIHT 635 (733)
T ss_pred CCCCCCccHHHHHHHHHHHHhhcccCC-CCEEEEEeCCChhhCCHhhcCCCccceEE--EeCCcCHHHHHHHHHHHh
Confidence 00 112334444432 22 34556777766553321 1 2 22356 688888888888887543
No 176
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.44 E-value=0.041 Score=49.23 Aligned_cols=98 Identities=11% Similarity=0.054 Sum_probs=57.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCC-CHH
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDL-NDD 214 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-~~~ 214 (331)
...-+-+||..|+|||+|++.+.+...-+. .--|.|++..- .++..+...++. ...||+|.+||+-=. +..
T Consensus 51 pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~~L--~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~ 122 (249)
T PF05673_consen 51 PANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKEDL--GDLPELLDLLRD--RPYKFILFCDDLSFEEGDT 122 (249)
T ss_pred CCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHHHh--ccHHHHHHHHhc--CCCCEEEEecCCCCCCCcH
Confidence 344556799999999999999987422111 11233332211 234444555543 346999999998532 345
Q ss_pred hHHHHHHhhcCCCC---CCcEEEEecCCch
Q 020066 215 NLANLRLLVTNMDL---VGFYVLVTTQSRS 241 (331)
Q Consensus 215 ~~~~l~~~l~~~~~---~gs~IIvTTR~~~ 241 (331)
.+..++..+..+-. .+..|..||-.++
T Consensus 123 ~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 123 EYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred HHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 67777777754211 2345556665444
No 177
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.44 E-value=0.082 Score=47.08 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=56.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCC-CCHH
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCD-LNDD 214 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~-~~~~ 214 (331)
...-+-+||..|+||+.|++++.+. +.+..-. -|.|++.-- .++-.+...++ ....||.|..||+-= .+.+
T Consensus 84 pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~dl--~~Lp~l~~~Lr--~~~~kFIlFcDDLSFe~gd~ 155 (287)
T COG2607 84 PANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKEDL--ATLPDLVELLR--ARPEKFILFCDDLSFEEGDD 155 (287)
T ss_pred cccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHHHH--hhHHHHHHHHh--cCCceEEEEecCCCCCCCch
Confidence 3445668999999999999999884 3322222 333332210 12222223332 245699999999853 3456
Q ss_pred hHHHHHHhhcCCCC--CCcEEEEecCCc
Q 020066 215 NLANLRLLVTNMDL--VGFYVLVTTQSR 240 (331)
Q Consensus 215 ~~~~l~~~l~~~~~--~gs~IIvTTR~~ 240 (331)
.+..++..+..+-. +.-.++..|.|.
T Consensus 156 ~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 156 AYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred HHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 78888888865321 333455555443
No 178
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.021 Score=51.47 Aligned_cols=22 Identities=9% Similarity=0.315 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 179
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.41 E-value=0.0071 Score=52.81 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=29.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGK 177 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 177 (331)
.-.++-|+|.+|+|||+|+..+..+. ...-..++|++...
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG 50 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC
Confidence 35789999999999999998776532 12235677887754
No 180
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.37 E-value=0.037 Score=48.23 Aligned_cols=106 Identities=13% Similarity=0.160 Sum_probs=55.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhcccc--CC--------CcC-ceEE--EEeCCCCCcc-----ccHHHHHHHHHhccCCc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDI--VS--------RFP-RHIW--FSVGKILDLS-----TVMNVITIRCKEIPSSE 199 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~--------~F~-~~~w--v~vs~~~~~~-----~~~~~l~~~l~~~l~~k 199 (331)
+++.|+|..|.|||||.+.+.....+ .. .|. ..++ .++.++.... .....+...+...-..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 78999999999999999888642211 00 111 1122 2222221111 11122222222111137
Q ss_pred eeEEEEeCCCCC-CHHhHHH----HHHhhcCCCCCCcEEEEecCCchHHhhc
Q 020066 200 MLLIALDGLCDL-NDDNLAN----LRLLVTNMDLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 200 r~LlVLDdvw~~-~~~~~~~----l~~~l~~~~~~gs~IIvTTR~~~va~~~ 246 (331)
+-++++|..-.. +...... +...+. . .|..+|++|.+.+.+...
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l~--~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLK--N-KNTIGIISTHDLELADLL 154 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHHH--H-CCCEEEEEcCcHHHHHhh
Confidence 899999986442 2222222 223332 3 467899999988877655
No 181
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.36 E-value=0.0027 Score=50.42 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.1
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|.|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999875
No 182
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.0066 Score=55.01 Aligned_cols=79 Identities=10% Similarity=0.061 Sum_probs=43.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccH--HHHHHHHHhccCCceeEEEEeCCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVM--NVITIRCKEIPSSEMLLIALDGLCDLN 212 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~--~~l~~~l~~~l~~kr~LlVLDdvw~~~ 212 (331)
...-+.++|.+|+|||.||.++.+..- +..+ .+.+++++.-+... ... ......+.+.+. +-=||||||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~-~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITAPDLLSKLKAAFDEGRLEEKLLRELK-KVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh-cCCEEEEecccCcc
Confidence 344577899999999999999998643 3223 33444433222111 000 111122222121 23489999997764
Q ss_pred HHhHH
Q 020066 213 DDNLA 217 (331)
Q Consensus 213 ~~~~~ 217 (331)
...|.
T Consensus 181 ~~~~~ 185 (254)
T COG1484 181 FSQEE 185 (254)
T ss_pred CCHHH
Confidence 44443
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=96.36 E-value=0.032 Score=58.51 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=74.2
Q ss_pred cCCchhHHHHHHHhhccccCCCcC-ceEEEEeCCCCCccccHHHHHHHHHhc-----cCC-ceeEEEEeCCCCCCHHhHH
Q 020066 145 VSGTEVTHIAHRVFMDDDIVSRFP-RHIWFSVGKILDLSTVMNVITIRCKEI-----PSS-EMLLIALDGLCDLNDDNLA 217 (331)
Q Consensus 145 ~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~l~~~l~~~-----l~~-kr~LlVLDdvw~~~~~~~~ 217 (331)
+.++||||+|..++++- ..+.++ ..+-++.|.... .+.+...+.+. +.+ +.-++|||++...+.+..+
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rg----id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQn 648 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERG----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQ 648 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCccc----HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHH
Confidence 57899999999998852 112222 123344443222 22333333221 222 4579999999998888888
Q ss_pred HHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCccccccccCCChHHHHHHHhhhC
Q 020066 218 NLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 218 ~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.|+..+-... ..+++|++|.+.. +... .+.+..+ ++.+++.++-...+.+.+
T Consensus 649 ALLk~lEep~-~~~~FILi~N~~~kIi~tIrSRC~~i--~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 649 ALRRTMEMFS-SNVRFILSCNYSSKIIEPIQSRCAIF--RFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred HHHHHhhCCC-CCeEEEEEeCChhhCchHHhhhceEE--eCCCCCHHHHHHHHHHHH
Confidence 8888876544 5667766665443 3322 2345578 999999988887776543
No 184
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.029 Score=49.00 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999863
No 185
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.35 E-value=0.019 Score=50.60 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=30.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCC----CcCceEEEEeCCCCCc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVS----RFPRHIWFSVGKILDL 181 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~ 181 (331)
.-.++.|+|.+|+|||+|+..+........ .=..++|++....++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~ 67 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRP 67 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCH
Confidence 356889999999999999988765321111 0034577776665543
No 186
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.35 E-value=0.16 Score=43.89 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 82 VMRIRERLVRSMDSLKKIVAGQDVESGDLSHRSAETELEGSVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 82 ~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~vG~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.+.+.+++..+++.++.+.+.+. ...++.. .+....|+|+|.+|+|||||...+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-~~~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRE---------------------LQRRRRK-RSGIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH---------------------HHHHhhh-hcCCCeEEEECCCCCCHHHHHHHHhcch
Confidence 35577888888888888765531 1122211 3456789999999999999999888754
No 187
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.019 Score=50.68 Aligned_cols=55 Identities=20% Similarity=0.074 Sum_probs=35.6
Q ss_pred CceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhccCCccc
Q 020066 198 SEMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMKQTVPE 252 (331)
Q Consensus 198 ~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~~~~~~ 252 (331)
-++-|.|||.-++- +.+....+...+..-.++|+.+++.|..+.++....+..+|
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34669999988774 44555555444432211577888888888888877655444
No 188
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.34 E-value=0.025 Score=49.42 Aligned_cols=24 Identities=13% Similarity=0.074 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998763
No 189
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.33 E-value=0.0079 Score=53.22 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=28.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVG 176 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 176 (331)
.-.++-|+|.+|+|||+||.++..... ..-..++|++..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECC
Confidence 356889999999999999988775321 223456788766
No 190
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.33 E-value=0.0091 Score=52.43 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.+.+|+|-|.+|+||||+|+.++..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999873
No 191
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.31 E-value=0.003 Score=54.69 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
||+|.|.+|+||||||+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998763
No 192
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.29 E-value=0.027 Score=48.89 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||.+.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998764
No 193
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.28 E-value=0.052 Score=49.62 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=63.9
Q ss_pred CcHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE---Ee----------------CCCC--
Q 020066 121 GSVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF---SV----------------GKIL-- 179 (331)
Q Consensus 121 G~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv---~v----------------s~~~-- 179 (331)
|..+.++..|.. .....-++|+|..|+|||||.+.+.... . .....+++ .+ .+..
T Consensus 96 ~~~~~~l~~l~~-~~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~ 171 (270)
T TIGR02858 96 GAADKLLPYLVR-NNRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVG 171 (270)
T ss_pred CcHHHHHHHHHh-CCCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhHHHHHHHhccccccccc
Confidence 455666666664 3345678999999999999999998632 1 11111121 00 1100
Q ss_pred ---CccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 180 ---DLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 180 ---~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
++.++.... ..+... ....+-++++|.+-. .+.+..+...+. .|..||+||.+..+..
T Consensus 172 ~r~~v~~~~~k~-~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~----~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 172 IRTDVLDGCPKA-EGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH----AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccchHH-HHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh----CCCEEEEEechhHHHH
Confidence 000111111 111111 224688999999865 445666666553 5678999999776644
No 194
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.023 Score=48.35 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 195
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.28 E-value=0.0036 Score=54.76 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.1
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|+|.|.+|+|||||++.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999874
No 196
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.27 E-value=0.031 Score=49.15 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5799999999999999999975
No 197
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.26 E-value=0.044 Score=51.78 Aligned_cols=56 Identities=20% Similarity=0.404 Sum_probs=38.3
Q ss_pred cHHHHHHHHhcCCCC-cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc
Q 020066 122 SVDSVKNALLRDGST-VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS 182 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 182 (331)
+...+...+..++.. +..|-|+|..|.|||.+.+.+++.... ..+|++.-..+...
T Consensus 14 qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 14 QIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYA 70 (438)
T ss_pred HHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHH
Confidence 455555555544443 345589999999999999999986522 34688776666544
No 198
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.052 Score=50.43 Aligned_cols=136 Identities=11% Similarity=0.087 Sum_probs=74.9
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCC-------------------cCceEEEEeCCCCCcc
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR-------------------FPRHIWFSVGKILDLS 182 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~wv~vs~~~~~~ 182 (331)
....+..+......-...+-+.|..|+||||+|..+.+.-..... .+....+.-+......
T Consensus 9 ~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~ 88 (325)
T COG0470 9 AVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID 88 (325)
T ss_pred HHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc
Confidence 344555666532323345788999999999999888764321110 1122233333222211
Q ss_pred ccHHHHHHHHHhc----cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhcc-CCccccccc
Q 020066 183 TVMNVITIRCKEI----PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMMK-QTVPEAEHL 256 (331)
Q Consensus 183 ~~~~~l~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~~-~~~~~~~~l 256 (331)
...+.+....... ..++.-++++|++.....+.-+.+...+-... ..+.+|++|.... +...+. .+..+ ++
T Consensus 89 i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~-~~~~~il~~n~~~~il~tI~SRc~~i--~f 165 (325)
T COG0470 89 IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPP-KNTRFILITNDPSKILPTIRSRCQRI--RF 165 (325)
T ss_pred chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCC-CCeEEEEEcCChhhccchhhhcceee--ec
Confidence 1122232222221 12567899999999877666677776666555 6788888887433 322222 23345 66
Q ss_pred cCCC
Q 020066 257 IYFS 260 (331)
Q Consensus 257 ~~L~ 260 (331)
.+.+
T Consensus 166 ~~~~ 169 (325)
T COG0470 166 KPPS 169 (325)
T ss_pred CCch
Confidence 6533
No 199
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.25 E-value=0.0074 Score=56.61 Aligned_cols=106 Identities=17% Similarity=0.223 Sum_probs=59.9
Q ss_pred HHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc-ccCCCcCceE-E---EEeCCCCCcc----------------ccH
Q 020066 127 KNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD-DIVSRFPRHI-W---FSVGKILDLS----------------TVM 185 (331)
Q Consensus 127 ~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~-w---v~vs~~~~~~----------------~~~ 185 (331)
.+.|+ ++.+..|++.|.+|.|||-||-+..-.+ ..++.|..++ . +.+.+..-.- +++
T Consensus 237 LdlLl--d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnL 314 (436)
T COG1875 237 LDLLL--DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNL 314 (436)
T ss_pred HHHhc--CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHH
Confidence 45566 6789999999999999999996543211 2233343322 1 1222211100 111
Q ss_pred H-----------HHHHHHH---------hccCCc---eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecC
Q 020066 186 N-----------VITIRCK---------EIPSSE---MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQ 238 (331)
Q Consensus 186 ~-----------~l~~~l~---------~~l~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR 238 (331)
+ .+...+. .+.+|+ .-++|+|...+-... .++..+.... .||||+.|--
T Consensus 315 E~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTph---eikTiltR~G-~GsKIVl~gd 386 (436)
T COG1875 315 EVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPH---ELKTILTRAG-EGSKIVLTGD 386 (436)
T ss_pred HHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHH---HHHHHHHhcc-CCCEEEEcCC
Confidence 1 2222211 223444 458999999886543 4455555556 8999998875
No 200
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.25 E-value=0.0096 Score=54.02 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCCcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILDLS 182 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~ 182 (331)
.+.=|+|.+|+|||+|+..++-...+... =..++|++-...|+..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~ 87 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPE 87 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHH
Confidence 47889999999999999777654333221 2357799888888765
No 201
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.25 E-value=0.023 Score=59.32 Aligned_cols=128 Identities=15% Similarity=0.113 Sum_probs=65.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCC--
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLN-- 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-- 212 (331)
.+-+.++|.+|+|||+||+.+.+.. ...| +.++.+...... .....+...+.......+.+|+||++....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~--~~~~---i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~ 286 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEA--GAYF---ISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPK 286 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHh--CCeE---EEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhccc
Confidence 3457799999999999999998842 2222 222211111110 222334444444455667899999985420
Q ss_pred ---------HHhHHHHHHhhcCCCCCCcEEEE-ecCCch-HHhhc---cC-CccccccccCCChHHHHHHHhhh
Q 020066 213 ---------DDNLANLRLLVTNMDLVGFYVLV-TTQSRS-VATMM---KQ-TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 213 ---------~~~~~~l~~~l~~~~~~gs~IIv-TTR~~~-va~~~---~~-~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
......+...+......+..+|+ ||...+ +-..+ +. ...+ .+...+.++-.++++..
T Consensus 287 r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i--~i~~P~~~~R~~Il~~~ 358 (733)
T TIGR01243 287 REEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREI--VIRVPDKRARKEILKVH 358 (733)
T ss_pred ccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEE--EeCCcCHHHHHHHHHHH
Confidence 11122343333322202334444 454332 11111 11 2345 67777888777777743
No 202
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.24 E-value=0.037 Score=48.36 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhh
Q 020066 139 FIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+++|+|..|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 889999999999999999975
No 203
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0076 Score=60.90 Aligned_cols=70 Identities=17% Similarity=0.075 Sum_probs=45.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHH----HHHHhccCCceeEEEEeCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVIT----IRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~----~~l~~~l~~kr~LlVLDdvw~ 210 (331)
.-|-|.|..|+|||+||+.+++... +++.-++.+|+-+.-.. ...+..+ ..+.+.+...+.+|||||+..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~--~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDG--SSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccc--hhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 3467899999999999999998543 33333333443332211 2233333 344556778899999999853
No 204
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.23 E-value=0.024 Score=58.20 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=68.8
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--cccHHHHHHHHHhccCCceeEEEEeCCCCCC----
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL--STVMNVITIRCKEIPSSEMLLIALDGLCDLN---- 212 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~---- 212 (331)
-+.++|.+|+|||++|+.+.+... -+| +.++.+.-... ......+...+.......+++|++|+++...
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~--~~f---~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAK--VPF---FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcC--CCE---EEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC
Confidence 388999999999999999987432 222 12221111000 0122233333444445568999999986520
Q ss_pred ------HHhHHHHHHh----hcC--CCCCCcEEEEecCCchHHhh--c--c-CCccccccccCCChHHHHHHHhhhC
Q 020066 213 ------DDNLANLRLL----VTN--MDLVGFYVLVTTQSRSVATM--M--K-QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ------~~~~~~l~~~----l~~--~~~~gs~IIvTTR~~~va~~--~--~-~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
...+...... +.. .+ .+.-||.||...+.... . + ..+.+ .+...+.++-.++|+.+.
T Consensus 262 ~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD~Al~RpgRfdr~i--~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 262 AGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQV--VVGLPDVRGREQILKVHM 335 (644)
T ss_pred CCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcCHHHhCCcccceEE--EcCCCCHHHHHHHHHHHh
Confidence 1223333322 221 22 35556667776653221 1 2 12456 677778777778877654
No 205
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.22 E-value=0.026 Score=49.55 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999976
No 206
>PRK04296 thymidine kinase; Provisional
Probab=96.22 E-value=0.039 Score=47.64 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=52.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe--CCCC---------Cc------cccHHHHHHHHHhccCCce
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV--GKIL---------DL------STVMNVITIRCKEIPSSEM 200 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~---------~~------~~~~~~l~~~l~~~l~~kr 200 (331)
.++.|+|..|.||||++..+...... +-..++.+.- .... .. ......+...+.+ ..++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCC
Confidence 36678999999999999766553211 1111112210 0000 00 0223444444444 33445
Q ss_pred eEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch
Q 020066 201 LLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS 241 (331)
Q Consensus 201 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~ 241 (331)
-+||+|.+.--+.++...+...+. . .|..||+|.++.+
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~--~-~g~~vi~tgl~~~ 117 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLD--D-LGIPVICYGLDTD 117 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHH--H-cCCeEEEEecCcc
Confidence 589999986543333333444432 2 6789999999854
No 207
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.22 E-value=0.004 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.-.+|+|+|.+|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45579999999999999999999864
No 208
>PRK08233 hypothetical protein; Provisional
Probab=96.21 E-value=0.0038 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|+|.|.+|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999864
No 209
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.20 E-value=0.019 Score=58.31 Aligned_cols=81 Identities=11% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhc------cC--CceeEEEE
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEI------PS--SEMLLIAL 205 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~------l~--~kr~LlVL 205 (331)
.+.-+++-++|.+|+||||||..|..+.. | .++=++.|..-.. ..+..++... +. +++.-||+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEE
Confidence 34567899999999999999999987532 2 1333444443222 2233333322 32 66777999
Q ss_pred eCCCCCCHHhHHHHHHhh
Q 020066 206 DGLCDLNDDNLANLRLLV 223 (331)
Q Consensus 206 Ddvw~~~~~~~~~l~~~l 223 (331)
|.++-.....-+.|+..+
T Consensus 394 DEIDGa~~~~Vdvilslv 411 (877)
T KOG1969|consen 394 DEIDGAPRAAVDVILSLV 411 (877)
T ss_pred ecccCCcHHHHHHHHHHH
Confidence 999876544455555444
No 210
>PRK06547 hypothetical protein; Provisional
Probab=96.19 E-value=0.0071 Score=51.48 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.9
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....+|.|.|..|+||||||+.+.+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999774
No 211
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.18 E-value=0.032 Score=49.26 Aligned_cols=22 Identities=9% Similarity=0.182 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 212
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.16 E-value=0.029 Score=49.66 Aligned_cols=23 Identities=13% Similarity=0.137 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.+..-
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 213
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.16 E-value=0.028 Score=49.38 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999975
No 214
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.16 E-value=0.037 Score=47.29 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999763
No 215
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.15 E-value=0.11 Score=48.33 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=29.2
Q ss_pred HHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 124 DSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 124 ~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.|.+.|... .....+|+|.|.=|+||||+.+.+.+.
T Consensus 6 ~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 6 KALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred HHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4556666644 267889999999999999999988764
No 216
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.15 E-value=0.045 Score=48.76 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 358999999999999999999863
No 217
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.14 E-value=0.027 Score=50.17 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 218
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.017 Score=57.55 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=46.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc----ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
.+=+-++|.+|+|||.||+.+.++..+ . ++.++.+.-+. .+.+.+.+.+.+.-..-+|++++|+++-
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 445678999999999999999986433 2 33333222111 4556666666666778899999999864
No 219
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.14 E-value=0.041 Score=47.82 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|.|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAG 48 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999875
No 220
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.13 E-value=0.042 Score=48.89 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQR 50 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 221
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.12 E-value=0.033 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999763
No 222
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.049 Score=52.05 Aligned_cols=147 Identities=14% Similarity=0.103 Sum_probs=78.9
Q ss_pred cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhccccCCC-cCceEEEEeCCCCCc-----------------
Q 020066 122 SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR-FPRHIWFSVGKILDL----------------- 181 (331)
Q Consensus 122 ~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~----------------- 181 (331)
+.+++...|..- +....-+-|+|..|+|||+.++.+...-+.... .+ .++|+.-.....
T Consensus 25 ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~~~~~p~~ 103 (366)
T COG1474 25 EINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNKLGKVPLT 103 (366)
T ss_pred HHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHHcCCCCCC
Confidence 666666655433 222333889999999999999999874322111 11 344432211111
Q ss_pred cccHHHHHHHHHhcc--CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEE--EEecCCchHHhh--------ccCC
Q 020066 182 STVMNVITIRCKEIP--SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYV--LVTTQSRSVATM--------MKQT 249 (331)
Q Consensus 182 ~~~~~~l~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~I--IvTTR~~~va~~--------~~~~ 249 (331)
.....+....+.+.+ .++.+++|||++..-....-+.+..-+.......++| |..+-+-.+... ++..
T Consensus 104 g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~ 183 (366)
T COG1474 104 GDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPS 183 (366)
T ss_pred CCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcc
Confidence 133444445555554 4579999999987632111133333333222133443 333433333222 2233
Q ss_pred ccccccccCCChHHHHHHHhhhC
Q 020066 250 VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ + ..+|=+.++-..++..++
T Consensus 184 ~-I--~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 184 E-I--VFPPYTAEELYDILRERV 203 (366)
T ss_pred e-e--eeCCCCHHHHHHHHHHHH
Confidence 3 4 577778888888888765
No 223
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.031 Score=51.29 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||.+.++.
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G 55 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDG 55 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999976
No 224
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.10 E-value=0.039 Score=47.94 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 225
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.057 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999753
No 226
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.09 E-value=0.04 Score=48.04 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||.+.+..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999975
No 227
>PRK06217 hypothetical protein; Validated
Probab=96.09 E-value=0.013 Score=50.25 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=25.4
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCc--CceEEE
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRF--PRHIWF 173 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv 173 (331)
.|.|.|.+|+||||||+.+...... .+| |...|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 4889999999999999999875433 234 445564
No 228
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.09 E-value=0.025 Score=58.47 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999854
No 229
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.048 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 28 KKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 57899999999999999999753
No 230
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.08 E-value=0.036 Score=48.79 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999763
No 231
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.08 E-value=0.063 Score=45.46 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=57.6
Q ss_pred HHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCC---
Q 020066 123 VDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSS--- 198 (331)
Q Consensus 123 ~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~--- 198 (331)
+.++++.+..- ..+.+|+ |+|-.|+||+.+|+.+++...- ...-|+.+.=.. -+.+.+...+...-.+
T Consensus 8 m~~~~~~~~~~a~~~~pVl-I~GE~GtGK~~lA~~IH~~s~r----~~~pfi~vnc~~---~~~~~~e~~LFG~~~~~~~ 79 (168)
T PF00158_consen 8 MKRLREQAKRAASSDLPVL-ITGETGTGKELLARAIHNNSPR----KNGPFISVNCAA---LPEELLESELFGHEKGAFT 79 (168)
T ss_dssp HHHHHHHHHHHTTSTS-EE-EECSTTSSHHHHHHHHHHCSTT----TTS-EEEEETTT---S-HHHHHHHHHEBCSSSST
T ss_pred HHHHHHHHHHHhCCCCCEE-EEcCCCCcHHHHHHHHHHhhhc----ccCCeEEEehhh---hhcchhhhhhhcccccccc
Confidence 34444444322 2334554 9999999999999999984211 112233332111 1223344444433221
Q ss_pred -------------ceeEEEEeCCCCCCHHhHHHHHHhhcCC------CC----CCcEEEEecCCc
Q 020066 199 -------------EMLLIALDGLCDLNDDNLANLRLLVTNM------DL----VGFYVLVTTQSR 240 (331)
Q Consensus 199 -------------kr~LlVLDdvw~~~~~~~~~l~~~l~~~------~~----~gs~IIvTTR~~ 240 (331)
..=-|+||+|.......-..|...+..+ .. ...|||.||...
T Consensus 80 ~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 80 GARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp TTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 1236899999987666666666655421 10 256888888743
No 232
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=96.08 E-value=0.043 Score=50.97 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999763
No 233
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.07 E-value=0.1 Score=43.90 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=55.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccC-CC--cCc---eEEEEeCCCCCcc----------------ccHHHHHHHHHhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIV-SR--FPR---HIWFSVGKILDLS----------------TVMNVITIRCKEI 195 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~--F~~---~~wv~vs~~~~~~----------------~~~~~l~~~l~~~ 195 (331)
.+++|+|..|.|||||++.+..-.... .. |+. ..++ .+..... +.-+...-.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998642211 11 111 1122 2221110 1111222234445
Q ss_pred cCCceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 196 PSSEMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 196 l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
+-.++-+++||.--.. +......+...+.. .+..||++|.+.....
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsh~~~~~~ 152 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITVISVGHRPSLWK 152 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHH---hCCEEEEEeCChhHHh
Confidence 5567788999975442 33334444444432 1356888887766554
No 234
>PRK06762 hypothetical protein; Provisional
Probab=96.07 E-value=0.0048 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|+|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68899999999999999998764
No 235
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.07 E-value=0.048 Score=54.66 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-..++|+|..|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999965
No 236
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=96.07 E-value=0.0092 Score=53.86 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
+....|.++||+|+||||+.+.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 345677889999999999999998754
No 237
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.06 E-value=0.044 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4799999999999999999864
No 238
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.06 E-value=0.0087 Score=54.82 Aligned_cols=86 Identities=19% Similarity=0.187 Sum_probs=45.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhcc-----
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIP----- 196 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l----- 196 (331)
....+++.++. .+.++ -++|..|+|||++++.......- ..|- ..-++.+. ......++..+...+
T Consensus 21 r~~~ll~~l~~--~~~pv-Ll~G~~GtGKT~li~~~l~~l~~-~~~~-~~~~~~s~----~Tts~~~q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 21 RYSYLLDLLLS--NGRPV-LLVGPSGTGKTSLIQNFLSSLDS-DKYL-VITINFSA----QTTSNQLQKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHHH--CTEEE-EEESSTTSSHHHHHHHHHHCSTT-CCEE-EEEEES-T----THHHHHHHHCCCTTECECTT
T ss_pred HHHHHHHHHHH--cCCcE-EEECCCCCchhHHHHhhhccCCc-cccc-eeEeeccC----CCCHHHHHHHHhhcEEcCCC
Confidence 33456666664 34444 58999999999999887753211 1111 11222222 222333333333222
Q ss_pred ------CCceeEEEEeCCCCCCHHhH
Q 020066 197 ------SSEMLLIALDGLCDLNDDNL 216 (331)
Q Consensus 197 ------~~kr~LlVLDdvw~~~~~~~ 216 (331)
.+|+.++.+||+.-...+.|
T Consensus 92 ~~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 92 RVYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp EEEEEESSSEEEEEEETTT-S---TT
T ss_pred CCCCCCCCcEEEEEecccCCCCCCCC
Confidence 36788999999976544333
No 239
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.05 E-value=0.026 Score=49.01 Aligned_cols=148 Identities=16% Similarity=0.136 Sum_probs=72.9
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc------ccHHHHHHHHHhcc--
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS------TVMNVITIRCKEIP-- 196 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~------~~~~~l~~~l~~~l-- 196 (331)
+.+..++. .+-++..|.|.+|+||||+...+....... .+ .++++..+...... .....+...+....
T Consensus 8 ~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~-g~-~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~ 83 (196)
T PF13604_consen 8 EAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA-GK-RVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNG 83 (196)
T ss_dssp HHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT-T---EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCE
T ss_pred HHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC-CC-eEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcc
Confidence 33444442 233567789999999999998876532222 11 22222211110000 00000111111111
Q ss_pred -------CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhccCCccccccccCCChHHHHHHHh
Q 020066 197 -------SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMKQTVPEAEHLIYFSESNSWSNLN 269 (331)
Q Consensus 197 -------~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~ 269 (331)
..+.-+||+|...-.+...+..+....+. .|+++|+.=- .. +|.|...-..+..+.
T Consensus 84 ~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~---~~~klilvGD------------~~--QL~pV~~g~~~~~l~ 146 (196)
T PF13604_consen 84 DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK---SGAKLILVGD------------PN--QLPPVGAGSPFADLQ 146 (196)
T ss_dssp ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T----T-EEEEEE-------------TT--SHHHCSTTCHHHHHC
T ss_pred cccccccCCcccEEEEecccccCHHHHHHHHHHHHh---cCCEEEEECC------------cc--hhcCCcCCcHHHHHH
Confidence 12346999999987777778888777653 3678776442 33 566666666666665
Q ss_pred hhCCCCCCCcccccccCcccccChHHHH
Q 020066 270 CELPPSSQEAHRVEALEPESAMDEEDVA 297 (331)
Q Consensus 270 ~~af~~~~~~~~l~~~~~~~~~~~~~v~ 297 (331)
..... ...|.++-.+..+.+..++
T Consensus 147 ~~~~~----~~~L~~i~Rq~~~~~~~~~ 170 (196)
T PF13604_consen 147 ESGGI----TVELTEIRRQKDPELREAA 170 (196)
T ss_dssp GCSTT----EEEE---SCCCCTHHHHHH
T ss_pred hcCCC----eEEeChhhcCCChHHHHHH
Confidence 54432 4566666665544444433
No 240
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.03 E-value=0.0053 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999998753
No 241
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.047 Score=47.54 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=63.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe--CC---------C-CCcc------ccHHHHHHHHHhccCCc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV--GK---------I-LDLS------TVMNVITIRCKEIPSSE 199 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~---------~-~~~~------~~~~~l~~~l~~~l~~k 199 (331)
+.|-+.|.+|+||||+|+.+..-- ...+|-.+ +. . +... .-.+.....+-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L------~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-- 73 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL------RQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-- 73 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH------HHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc--
Confidence 456788999999999999887521 11233211 11 1 1111 112222233344444
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhh----cCCCCCCcEEEEecCCchHHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLV----TNMDLVGFYVLVTTQSRSVATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l----~~~~~~gs~IIvTTR~~~va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+++|.||... ...+...+ .... ..-+||-+--..+++-.... - +=+|.+++--.+|..++-
T Consensus 74 n~~VIvDdtNY-----yksmRrqL~ceak~~~-tt~ciIyl~~plDtc~rrN~---e--rgepip~Evl~qly~RfE 139 (261)
T COG4088 74 NYLVIVDDTNY-----YKSMRRQLACEAKERK-TTWCIIYLRTPLDTCLRRNR---E--RGEPIPEEVLRQLYDRFE 139 (261)
T ss_pred ceEEEEecccH-----HHHHHHHHHHHHHhcC-CceEEEEEccCHHHHHHhhc---c--CCCCCCHHHHHHHHHhhc
Confidence 89999999754 33333322 2223 44567766666666544432 2 566667777777777654
No 242
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.03 E-value=0.064 Score=47.22 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=57.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc---ccC----------CCcCceEEEEeCCCCCcc-------ccHHHHHHHHHhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD---DIV----------SRFPRHIWFSVGKILDLS-------TVMNVITIRCKEIP 196 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~----------~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~~~l 196 (331)
.+++.|+|..|.|||||.+.+.... +.. ..|+. ++..+....+.. .....+...+ .+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~-i~~~l~~~~si~~~~S~f~~el~~l~~~l--~~ 105 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDK-IFTRMSSRESVSSGQSAFMIDLYQVSKAL--RL 105 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeee-eeeeeCCccChhhccchHHHHHHHHHHHH--Hh
Confidence 4888999999999999998886321 110 01111 112222221211 1122222211 23
Q ss_pred CCceeEEEEeCCCCC-CHHhH----HHHHHhhcCC-CCCCcEEEEecCCchHHhhc
Q 020066 197 SSEMLLIALDGLCDL-NDDNL----ANLRLLVTNM-DLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 197 ~~kr~LlVLDdvw~~-~~~~~----~~l~~~l~~~-~~~gs~IIvTTR~~~va~~~ 246 (331)
..++.|++||..... +..+. ..+...+... . .+..+|+||...+++...
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~-~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGP-ECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCC-CCcEEEEEcChHHHHHhh
Confidence 467899999998653 22111 2233344322 2 346899999998887654
No 243
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.03 E-value=0.19 Score=46.72 Aligned_cols=129 Identities=9% Similarity=0.025 Sum_probs=80.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcccc------C--C-CcCceEEEEeCCCCCccccHHHHHHHHHhc---c-C-Ccee
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDI------V--S-RFPRHIWFSVGKILDLSTVMNVITIRCKEI---P-S-SEML 201 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~------~--~-~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~---l-~-~kr~ 201 (331)
-.++.-++|..|.||+++|..+.+.--. . . .++ ..++..... ....+++...+... - . +++=
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n-~~~~d~~g~---~i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN-IILFDIFDK---DLSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcc-eEEeccCCC---cCCHHHHHHHHHHhccCCcccCCce
Confidence 3567778999999999999887653211 1 1 122 233321111 12233443333222 1 2 5778
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc-hHHh-hccCCccccccccCCChHHHHHHHhhh
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR-SVAT-MMKQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~-~va~-~~~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
++|+|++........+.++..+.... .++.+|++|.+. .+.. ....+..+ ++.++++++....+...
T Consensus 93 vvII~~~e~m~~~a~NaLLK~LEEPp-~~t~~il~~~~~~kll~TI~SRc~~~--~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 93 ILIIKNIEKTSNSLLNALLKTIEEPP-KDTYFLLTTKNINKVLPTIVSRCQVF--NVKEPDQQKILAKLLSK 161 (299)
T ss_pred EEEEecccccCHHHHHHHHHHhhCCC-CCeEEEEEeCChHhChHHHHhCeEEE--ECCCCCHHHHHHHHHHc
Confidence 89999998877777888888887665 677777666443 3333 23445678 99999999998777764
No 244
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.048 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G 51 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMR 51 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 245
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.01 E-value=0.085 Score=45.87 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=56.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhccc---c---------C-CCcCceEEEEeCCCCCcc-------ccHHHHHHHHHhccC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDD---I---------V-SRFPRHIWFSVGKILDLS-------TVMNVITIRCKEIPS 197 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~---~---------~-~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~~~l~ 197 (331)
.++.|+|..|.|||||.+.+....- . . .+|+ .++.......+.. ....++...+. +.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~d-qi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~--~~ 106 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVD-RIFTRIGAEDSISDGRSTFMAELLELKEILS--LA 106 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcC-EEEEEecCcccccCCceeHHHHHHHHHHHHH--hc
Confidence 6899999999999999999873210 0 0 1111 2222222211111 12222222221 23
Q ss_pred CceeEEEEeCCCCC-CHHhH----HHHHHhhcCCCCCCcEEEEecCCchHHhhcc
Q 020066 198 SEMLLIALDGLCDL-NDDNL----ANLRLLVTNMDLVGFYVLVTTQSRSVATMMK 247 (331)
Q Consensus 198 ~kr~LlVLDdvw~~-~~~~~----~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~ 247 (331)
..+-++++|..-.. +...- ..+...+. . .++.+|++|.+.+++..+.
T Consensus 107 ~~~~llllDEp~~gld~~~~~~l~~~ll~~l~--~-~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 107 TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLL--E-KGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH--h-cCCeEEEECChHHHHHHhh
Confidence 46899999987542 21111 12223332 2 4678999999888877655
No 246
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.01 E-value=0.02 Score=54.39 Aligned_cols=54 Identities=9% Similarity=-0.054 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCc-eEEEEeCCCC
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-HIWFSVGKIL 179 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~ 179 (331)
.++++.+..-..+ ..+.|+|..|+|||||++.+.+.-. .++-+. .+|+.+.+..
T Consensus 121 ~RvID~l~PiGkG-QR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~ 175 (380)
T PRK12608 121 MRVVDLVAPIGKG-QRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERP 175 (380)
T ss_pred HhhhhheeecCCC-ceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCC
Confidence 4566666632223 3558999999999999999877321 112233 3565555444
No 247
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.00 E-value=0.037 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999975
No 248
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.00 E-value=0.0067 Score=51.52 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=26.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF 173 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 173 (331)
...+|.++|+.|+||||+|+.+++. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4568999999999999999999874 33334444444
No 249
>PTZ00301 uridine kinase; Provisional
Probab=96.00 E-value=0.0055 Score=53.90 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..+|+|.|.+|+||||||+.+.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57899999999999999988765
No 250
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.98 E-value=0.041 Score=49.76 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||.+.++.
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 251
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.97 E-value=0.021 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=20.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-+++.|+|.+|+|||+|+.++..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~ 47 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVY 47 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHH
Confidence 456888999999999999988743
No 252
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.96 E-value=0.046 Score=47.99 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47899999999999999999764
No 253
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.039 Score=48.31 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999875
No 254
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.94 E-value=0.058 Score=47.90 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|.|||||++.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999875
No 255
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.94 E-value=0.033 Score=50.40 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=59.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC--cc--------------------------ccHHHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD--LS--------------------------TVMNVI 188 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~--------------------------~~~~~l 188 (331)
-.++++||-.|+|||||++.+.. ..+.-...+++.-.+... .. -+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35799999999999999999976 222222233322111000 00 011111
Q ss_pred H-HHHHhccCCceeEEEEeCCCCC-CH---HhHHHHHHhhcCCCCCCcEEEEecCCchHHhhccC
Q 020066 189 T-IRCKEIPSSEMLLIALDGLCDL-ND---DNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMKQ 248 (331)
Q Consensus 189 ~-~~l~~~l~~kr~LlVLDdvw~~-~~---~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~~ 248 (331)
+ -.+.+.|.-++-|+|+|.--+. +. .+--.+...+... .|-..+..|.+-.|+..++.
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~--~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEE--LGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHH--hCCeEEEEEEEHHhhhhhcc
Confidence 1 2244556667889999976543 11 1222233333322 46678888888888877654
No 256
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.93 E-value=0.035 Score=56.48 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35689999999999999999864
No 257
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.92 E-value=0.042 Score=49.01 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~G 69 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSG 69 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 258
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.92 E-value=0.045 Score=50.83 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 259
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.92 E-value=0.044 Score=46.82 Aligned_cols=107 Identities=18% Similarity=0.305 Sum_probs=55.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc-c--cCC---CcC--ceEEEE---------eCCC-CCcc----ccHHHHHHHHHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD-D--IVS---RFP--RHIWFS---------VGKI-LDLS----TVMNVITIRCKE 194 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~-~--~~~---~F~--~~~wv~---------vs~~-~~~~----~~~~~l~~~l~~ 194 (331)
-.+++|+|..|+|||||.+.+..+. . +.. .|. ...|+. +... .+.. +.-+...-.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHH
Confidence 3578999999999999999886321 1 111 111 122321 1000 0000 111222223444
Q ss_pred ccCCc--eeEEEEeCCCCC-CHHhHHHHHHhhcC-CCCCCcEEEEecCCchHHh
Q 020066 195 IPSSE--MLLIALDGLCDL-NDDNLANLRLLVTN-MDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 195 ~l~~k--r~LlVLDdvw~~-~~~~~~~l~~~l~~-~~~~gs~IIvTTR~~~va~ 244 (331)
.+-.+ +-+++||.--.. +....+.+...+.. .. .|..||++|.+.+...
T Consensus 101 al~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~~~~~ 153 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNLDVLS 153 (176)
T ss_pred HHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 55556 778899976442 33333444443332 12 3667888888877654
No 260
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.90 E-value=0.054 Score=47.16 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 261
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=95.90 E-value=0.041 Score=49.12 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999753
No 262
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.89 E-value=0.033 Score=58.10 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=48.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC---cc------------ccHHHHHHHHHhccCCcee
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD---LS------------TVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~------------~~~~~l~~~l~~~l~~kr~ 201 (331)
...+-++|..|+|||+||+.+.... ... .+.++.+.-.. .. .....+...+. +....
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l--~~~---~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~s 559 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKAL--GIE---LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHA 559 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh--CCC---cEEeechhhcccccHHHHcCCCCCcccccccchHHHHHH---hCCCc
Confidence 4567889999999999999987743 111 12222221111 00 00111222222 12346
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcC
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTN 225 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~ 225 (331)
+|+||++...+.+.++.++..+..
T Consensus 560 VlllDEieka~~~v~~~LLq~ld~ 583 (758)
T PRK11034 560 VLLLDEIEKAHPDVFNLLLQVMDN 583 (758)
T ss_pred EEEeccHhhhhHHHHHHHHHHHhc
Confidence 999999999888888888877754
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.89 E-value=0.018 Score=50.66 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-.++.|.|.+|+|||||+.++..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~ 41 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAV 41 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 357888999999999999988765
No 264
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.88 E-value=0.05 Score=47.84 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999875
No 265
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.88 E-value=0.038 Score=57.33 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||++.+..
T Consensus 492 ~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 492 EKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5689999999999999999865
No 266
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.88 E-value=0.0063 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.++|.|+|..|+||||+++.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999988753
No 267
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.87 E-value=0.048 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||.+.++..
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 268
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.076 Score=48.40 Aligned_cols=142 Identities=11% Similarity=0.124 Sum_probs=80.3
Q ss_pred CCCCC--cHHHHHHHHhcC----CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHH
Q 020066 117 TELEG--SVDSVKNALLRD----GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITI 190 (331)
Q Consensus 117 ~~~vG--~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~ 190 (331)
..++| ...+-++..... +..+--+-++|.+|.||||||.-+.+.-.+. +. +.+.+-. .....+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~k------~tsGp~l-eK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--LK------ITSGPAL-EKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--eE------ecccccc-cChhhHHH
Confidence 45778 444444443332 5567778899999999999999998853322 11 1111111 23344444
Q ss_pred HHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcC--------CCCCCcE-----------EEEecCCchHHhhccC--C
Q 020066 191 RCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTN--------MDLVGFY-----------VLVTTQSRSVATMMKQ--T 249 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~--------~~~~gs~-----------IIvTTR~~~va~~~~~--~ 249 (331)
.+.. |+.. =+|.+|.+...+...-+.+..+.-+ .. +++| |=-|||.-.+...... .
T Consensus 97 iLt~-Le~~-DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~g-p~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFG 173 (332)
T COG2255 97 ILTN-LEEG-DVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKG-PAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFG 173 (332)
T ss_pred HHhc-CCcC-CeEEEehhhhcChhHHHHhhhhhhheeEEEEEccC-CccceEeccCCCeeEeeeccccccccchhHHhcC
Confidence 4444 4433 4567798877554333334333321 12 3343 3478886554443321 2
Q ss_pred ccccccccCCChHHHHHHHhhhC
Q 020066 250 VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
-+. +|+.-+.+|--++..+.+
T Consensus 174 i~~--rlefY~~~eL~~Iv~r~a 194 (332)
T COG2255 174 IIQ--RLEFYTVEELEEIVKRSA 194 (332)
T ss_pred Cee--eeecCCHHHHHHHHHHHH
Confidence 244 777788888888888766
No 269
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.86 E-value=0.015 Score=52.16 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=21.5
Q ss_pred EEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 142 IVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 142 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
|+|++|+||||+++.+.+.-... -...+-|+..+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~--~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN--GRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc--cCCceEEEcchH
Confidence 68999999999999998753322 223444555433
No 270
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.85 E-value=0.041 Score=52.13 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 ei~gIiG~sGaGKSTLlr~I~g 53 (343)
T TIGR02314 32 QIYGVIGASGAGKSTLIRCVNL 53 (343)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 271
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=95.84 E-value=0.054 Score=54.29 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 348 G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 348 GERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999865
No 272
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.84 E-value=0.045 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999763
No 273
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.80 E-value=0.058 Score=46.68 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 274
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.059 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 275
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.013 Score=60.58 Aligned_cols=95 Identities=15% Similarity=0.132 Sum_probs=58.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCCCc---CceEEEEeCCC-------------CCcc--ccHHHHHHHHHhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF---PRHIWFSVGKI-------------LDLS--TVMNVITIRCKEIP 196 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~-------------~~~~--~~~~~l~~~l~~~l 196 (331)
......-.+|+.|+|||.||+.+...- | +..+-+..|.- +... ..- -.|-+..
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~L-----fg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeG----G~LTEaV 589 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEAL-----FGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEG----GQLTEAV 589 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHHh-----cCCCccceeechHHHHHHHHHHHHhCCCCCCceeccc----cchhHhh
Confidence 345567779999999999998876521 2 11111111111 1000 122 2344555
Q ss_pred CCcee-EEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecC
Q 020066 197 SSEML-LIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQ 238 (331)
Q Consensus 197 ~~kr~-LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR 238 (331)
+.++| +|.||.|...+.+.++.++..|.++.. .++-||.||-
T Consensus 590 Rr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN 642 (786)
T COG0542 590 RRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSN 642 (786)
T ss_pred hcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecc
Confidence 66777 888999999999899998888865321 2356677774
No 276
>PRK03839 putative kinase; Provisional
Probab=95.77 E-value=0.0071 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.3
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.|.|+|++|+||||+++.+.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998853
No 277
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.76 E-value=0.069 Score=46.67 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999763
No 278
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.76 E-value=0.047 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~ 49 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGF 49 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999864
No 279
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.76 E-value=0.0071 Score=43.16 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|..|+||||+++.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988774
No 280
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.75 E-value=0.056 Score=47.90 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.0088 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.|.|++|+|||||++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 45789999999999999999864
No 282
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.74 E-value=0.02 Score=50.51 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL 179 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 179 (331)
.-++|+|..|+|||+|+..+.++.. -+..+++.+.+..
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~ 53 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERG 53 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccc
Confidence 4578999999999999998887542 2334666666553
No 283
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.74 E-value=0.059 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999763
No 284
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.73 E-value=0.035 Score=54.60 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=65.1
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCc-eEEEEeCCCCCcccc--HHHHH--HHHHhccCC---ceeEEEEeCCCCC
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-HIWFSVGKILDLSTV--MNVIT--IRCKEIPSS---EMLLIALDGLCDL 211 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~--~~~l~--~~l~~~l~~---kr~LlVLDdvw~~ 211 (331)
+-+.|.+|+|||+||+.+.....-...|.. .+-. +.+.++... ..... ..+.....| .--+|++|+++..
T Consensus 42 VLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~f--ttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra 119 (498)
T PRK13531 42 VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF--STPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA 119 (498)
T ss_pred EEEECCCChhHHHHHHHHHHHhcccCcceeeeeee--cCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccC
Confidence 558999999999999999874222223431 1111 111111100 11110 011111112 1228999999988
Q ss_pred CHHhHHHHHHhhcC-----CCC---CCcEEEEecCCchHHh-------hccCC-ccccccccCCChH-HHHHHHhhh
Q 020066 212 NDDNLANLRLLVTN-----MDL---VGFYVLVTTQSRSVAT-------MMKQT-VPEAEHLIYFSES-NSWSNLNCE 271 (331)
Q Consensus 212 ~~~~~~~l~~~l~~-----~~~---~gs~IIvTTR~~~va~-------~~~~~-~~~~~~l~~L~~~-~s~~Lf~~~ 271 (331)
.......|+..+.. +.. ...++|+++.+ .+.. .+... -.+ .+++++.+ +..+++...
T Consensus 120 sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN-~LPE~g~~leAL~DRFliri--~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 120 GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN-ELPEADSSLEALYDRMLIRL--WLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC-CCcccCCchHHhHhhEEEEE--ECCCCCchHHHHHHHHcc
Confidence 77777777766621 110 12356555554 3332 11111 134 79999854 447888764
No 285
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.052 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999753
No 286
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.72 E-value=0.1 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999763
No 287
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.068 Score=53.16 Aligned_cols=128 Identities=17% Similarity=0.123 Sum_probs=77.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
..+.+-++|++|.|||.||+.+.+. ...+| +.+... +.. .....+...+....+..++.|.+|.+..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~-~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS-ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH-HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 4557889999999999999999982 33333 222222 211 3344445555555678899999999864
Q ss_pred C------C-H----HhHHHHHHhhcCCCC-CCcEEEEecCCchHHhhc----cC-CccccccccCCChHHHHHHHhhhCC
Q 020066 211 L------N-D----DNLANLRLLVTNMDL-VGFYVLVTTQSRSVATMM----KQ-TVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 211 ~------~-~----~~~~~l~~~l~~~~~-~gs~IIvTTR~~~va~~~----~~-~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
- + . .....++..+..... .+-.||-||-..+..... +. ...+ .+.+-+.++..+.|+.+.-
T Consensus 347 ~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i--~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 347 LASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLI--YVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEe--ecCCCCHHHHHHHHHHHhc
Confidence 2 1 0 123444445543330 333456666555432211 12 2356 6888899999999998764
No 288
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=95.71 E-value=0.067 Score=46.42 Aligned_cols=106 Identities=14% Similarity=0.089 Sum_probs=57.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc--c-cCCC--cC--------------ceEEEEeCCCCCcc---------------
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD--D-IVSR--FP--------------RHIWFSVGKILDLS--------------- 182 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~--~-~~~~--F~--------------~~~wv~vs~~~~~~--------------- 182 (331)
-.+++|+|..|.|||||.+.+.... . .... |+ ..+++ +.+.....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~~~~ 104 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYVNEG 104 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhcccc
Confidence 3589999999999999999988752 1 1110 10 11211 12221111
Q ss_pred -ccHHHHHHHHHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcCC-CCCCcEEEEecCCchHHh
Q 020066 183 -TVMNVITIRCKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTNM-DLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 183 -~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IIvTTR~~~va~ 244 (331)
+.-+...-.+...+-.++-+++||+--.. +......+...+..- . .|..||++|.+.+.+.
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~~~~ 168 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQRLLD 168 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHHHHH
Confidence 11111122344455567889999986543 333333443333321 2 3667888888877665
No 289
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.065 Score=47.58 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (232)
T PRK10771 26 ERVAILGPSGAGKSTLLNLIAG 47 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999865
No 290
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.71 E-value=0.48 Score=47.68 Aligned_cols=116 Identities=13% Similarity=0.100 Sum_probs=63.6
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCccccHHHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLSTVMNVITIRC 192 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l 192 (331)
..++| ...++.+.+..-...-.-|-|+|..|+|||++|+.+++... -...| +.++..... ...+...+
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pf---v~i~c~~~~-----~~~~~~~l 267 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPF---VKVNCAALS-----ETLLESEL 267 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeecCCCC-----HHHHHHHH
Confidence 35567 55566555543222223355999999999999999987432 12222 222221111 11222222
Q ss_pred Hhc---------------c-CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCc
Q 020066 193 KEI---------------P-SSEMLLIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSR 240 (331)
Q Consensus 193 ~~~---------------l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~ 240 (331)
... + ....=.|+||+|..........|...+..+.. ...+||.||...
T Consensus 268 fg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 268 FGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred cCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCC
Confidence 111 1 12234689999998877777788777643210 125888887543
No 291
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.70 E-value=0.06 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|.|||||.+.+..
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~G 57 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIG 57 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999976
No 292
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.70 E-value=0.056 Score=48.80 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||++.++.-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999863
No 293
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.066 Score=46.58 Aligned_cols=23 Identities=9% Similarity=0.294 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999998764
No 294
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.68 E-value=0.044 Score=55.93 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=29.6
Q ss_pred cHHHHHHHHhcC---CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 122 SVDSVKNALLRD---GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 122 ~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++++..+|... ....+++.++|..|+||||+++.+...
T Consensus 92 ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 92 KIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 556677777543 223457999999999999999999874
No 295
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.027 Score=55.80 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=86.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccC----CCcCceEEEE--e--CCCCCcc----
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIV----SRFPRHIWFS--V--GKILDLS---- 182 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~--v--s~~~~~~---- 182 (331)
.++| -...|.+.+..+ .-..-.-..|..|+||||+|+.+...-... ..+...|-.| + +...|+.
T Consensus 17 evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDa 95 (515)
T COG2812 17 DVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDA 95 (515)
T ss_pred HhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhh
Confidence 4567 444555555432 222333456999999999998876432222 1222233322 1 1112222
Q ss_pred ------ccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEE-ecCCchHHh-hccCCcccc
Q 020066 183 ------TVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLV-TTQSRSVAT-MMKQTVPEA 253 (331)
Q Consensus 183 ------~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIv-TTR~~~va~-~~~~~~~~~ 253 (331)
++...+.+.+.-. .++|-=+.|+|.|.-.....|+.++..+-.-. ..-..|+ ||--..+.. ..+.+..|
T Consensus 96 ASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP-~hV~FIlATTe~~Kip~TIlSRcq~f- 173 (515)
T COG2812 96 ASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPP-SHVKFILATTEPQKIPNTILSRCQRF- 173 (515)
T ss_pred hhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCc-cCeEEEEecCCcCcCchhhhhccccc-
Confidence 3344444443332 34555588999998877788999988775444 4455444 554444543 33455678
Q ss_pred ccccCCChHHHHHHHhhhC
Q 020066 254 EHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 254 ~~l~~L~~~~s~~Lf~~~a 272 (331)
.++.|+.++-...+...+
T Consensus 174 -~fkri~~~~I~~~L~~i~ 191 (515)
T COG2812 174 -DFKRLDLEEIAKHLAAIL 191 (515)
T ss_pred -cccCCCHHHHHHHHHHHH
Confidence 999999887776666544
No 296
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.68 E-value=0.094 Score=45.29 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|.|..|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999763
No 297
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.66 E-value=0.073 Score=49.59 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 34 ei~gllGpNGaGKSTLl~~l~G 55 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLG 55 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999976
No 298
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.66 E-value=0.08 Score=45.71 Aligned_cols=23 Identities=13% Similarity=0.095 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999764
No 299
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.65 E-value=0.064 Score=49.08 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999975
No 300
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.64 E-value=0.06 Score=49.47 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.++.-
T Consensus 34 e~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 34 SWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred CEEEEECCCCCcHHHHHHHHhcc
Confidence 58999999999999999999863
No 301
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.64 E-value=0.017 Score=51.45 Aligned_cols=26 Identities=15% Similarity=0.178 Sum_probs=23.2
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.....+++|.|..|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999998876
No 302
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.64 E-value=0.007 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|.|..|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 303
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.63 E-value=0.064 Score=47.88 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999753
No 304
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.63 E-value=0.083 Score=45.31 Aligned_cols=106 Identities=17% Similarity=0.159 Sum_probs=55.1
Q ss_pred EEEEEecCCchhHHHHHHHhhcccc-------------CCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhccC--Cce
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDI-------------VSRFPRHIWFSVGKILDLS---TVMNVITIRCKEIPS--SEM 200 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~l~--~kr 200 (331)
++.|.|..|.||||+.+.+.-.... -..|+.. ........+.. .....-...+...+. .++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~i-l~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRI-FTRIGASDSLAQGLSTFMVEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceE-EEEeCCCCchhccccHHHHHHHHHHHHHHhCCCC
Confidence 3679999999999999988732110 0111111 11111111111 111111222333333 378
Q ss_pred eEEEEeCCCCC-CHHh----HHHHHHhhcCCCCCCcEEEEecCCchHHhhcc
Q 020066 201 LLIALDGLCDL-NDDN----LANLRLLVTNMDLVGFYVLVTTQSRSVATMMK 247 (331)
Q Consensus 201 ~LlVLDdvw~~-~~~~----~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~ 247 (331)
-|+++|..-.. +..+ ...+...+.. . .|+.+|++|.+.++...+.
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~-~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLE-K-IGALTLFATHYHELTKLAD 129 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHh-c-CCCeEEEEecHHHHHHHhh
Confidence 99999987653 2221 1223333332 2 3678999999888776554
No 305
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.63 E-value=0.096 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 306
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.62 E-value=0.02 Score=53.58 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=43.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-C
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-S 197 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~ 197 (331)
.-+++-|+|.+|+||||||.++...... .=...+|+.....++.. ...++....+...+ .
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3468889999999999999776543221 12345566554443322 23344444444333 3
Q ss_pred CceeEEEEeCCC
Q 020066 198 SEMLLIALDGLC 209 (331)
Q Consensus 198 ~kr~LlVLDdvw 209 (331)
+..-+||+|.|-
T Consensus 132 ~~~~lIVIDSv~ 143 (321)
T TIGR02012 132 GAVDIIVVDSVA 143 (321)
T ss_pred cCCcEEEEcchh
Confidence 456799999975
No 307
>PHA02244 ATPase-like protein
Probab=95.62 E-value=0.06 Score=51.19 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=54.6
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC---Ccc---ccHHHHH-HHHHh
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL---DLS---TVMNVIT-IRCKE 194 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~---~~~---~~~~~l~-~~l~~ 194 (331)
....+..++. .+.+ |-|+|..|+|||+||+.+.... ... |+.++... +.. ....... ..+..
T Consensus 108 ~~~ri~r~l~---~~~P-VLL~GppGtGKTtLA~aLA~~l--g~p-----fv~In~l~d~~~L~G~i~~~g~~~dgpLl~ 176 (383)
T PHA02244 108 ETADIAKIVN---ANIP-VFLKGGAGSGKNHIAEQIAEAL--DLD-----FYFMNAIMDEFELKGFIDANGKFHETPFYE 176 (383)
T ss_pred HHHHHHHHHh---cCCC-EEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecChHHHhhcccccccccccchHHHH
Confidence 3344544443 2333 4579999999999999998742 212 22222110 000 0000000 01111
Q ss_pred ccCCceeEEEEeCCCCCCHHhHHHHHHhhcC-----------CCCCCcEEEEecCC
Q 020066 195 IPSSEMLLIALDGLCDLNDDNLANLRLLVTN-----------MDLVGFYVLVTTQS 239 (331)
Q Consensus 195 ~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~-----------~~~~gs~IIvTTR~ 239 (331)
.. .+--+|+||++.....+....|...+.. .. ++.++|+|+..
T Consensus 177 A~-~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h-~~FRlIATsN~ 230 (383)
T PHA02244 177 AF-KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAH-EDFRVISAGNT 230 (383)
T ss_pred Hh-hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecC-CCEEEEEeeCC
Confidence 11 2245999999987665555555544421 23 56788888874
No 308
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=95.61 E-value=0.091 Score=45.61 Aligned_cols=105 Identities=15% Similarity=0.097 Sum_probs=55.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc-------------c-cCCCcCceEEEEeCCCCCcc-------ccHHHHHHHHHh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD-------------D-IVSRFPRHIWFSVGKILDLS-------TVMNVITIRCKE 194 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~-------------~-~~~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~~ 194 (331)
+-+++.|.|..|.|||||.+.+.... . .-.+|+... ..+....... ....++...+ .
T Consensus 27 ~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~-~~lg~~~~l~~~~s~fs~g~~~~~~i~-~ 104 (200)
T cd03280 27 NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIF-ADIGDEQSIEQSLSTFSSHMKNIARIL-Q 104 (200)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEE-EecCchhhhhcCcchHHHHHHHHHHHH-H
Confidence 34789999999999999999877210 0 011233221 1111111111 1222222222 2
Q ss_pred ccCCceeEEEEeCCCCC-CHHhH----HHHHHhhcCCCCCCcEEEEecCCchHHhhc
Q 020066 195 IPSSEMLLIALDGLCDL-NDDNL----ANLRLLVTNMDLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 195 ~l~~kr~LlVLDdvw~~-~~~~~----~~l~~~l~~~~~~gs~IIvTTR~~~va~~~ 246 (331)
.+ .++-++++|..-.. +.... ..+...+. . .|+.+|++|.+..+...+
T Consensus 105 ~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~--~-~~~~vi~~tH~~~l~~~~ 157 (200)
T cd03280 105 HA-DPDSLVLLDELGSGTDPVEGAALAIAILEELL--E-RGALVIATTHYGELKAYA 157 (200)
T ss_pred hC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHH--h-cCCEEEEECCHHHHHHHH
Confidence 23 46789999987653 22222 22333332 2 467899999987665544
No 309
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.61 E-value=0.013 Score=55.41 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCC---cHHHHHHHHhcC----CCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 118 ELEG---SVDSVKNALLRD----GSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.++| .++++++++... +...+++.++|.+|+||||||+.+.+.-
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4668 677788877543 3346889999999999999999997743
No 310
>PRK10908 cell division protein FtsE; Provisional
Probab=95.60 E-value=0.069 Score=47.07 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999753
No 311
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.058 Score=51.11 Aligned_cols=22 Identities=14% Similarity=0.383 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 32 ei~~iiG~nGsGKSTLlk~L~G 53 (343)
T PRK11153 32 EIFGVIGASGAGKSTLIRCINL 53 (343)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5789999999999999999875
No 312
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.59 E-value=0.011 Score=54.08 Aligned_cols=102 Identities=13% Similarity=0.055 Sum_probs=43.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEE-----eCC-CCCcc----ccHHHHHHHHHhccCCceeEEEEeC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFS-----VGK-ILDLS----TVMNVITIRCKEIPSSEMLLIALDG 207 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-----vs~-~~~~~----~~~~~l~~~l~~~l~~kr~LlVLDd 207 (331)
+.|.|+|.+|+||||+|+.+.....- ...+ +.+++ +.. .+... .....+...+.+.+. +..++|+||
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~-~~~~-v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd 78 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE-KGKE-VVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDD 78 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH-TT---EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh-cCCE-EEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeC
Confidence 57889999999999999988763211 1111 22221 011 11111 122334444555554 458899999
Q ss_pred CCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 208 LCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 208 vw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
.-....--+ .+...-.... .+..+|..-...+.|.
T Consensus 79 ~nYiKg~RY-elyclAr~~~-~~~c~i~~~~~~e~~~ 113 (270)
T PF08433_consen 79 NNYIKGMRY-ELYCLARAYG-TTFCVIYCDCPLETCL 113 (270)
T ss_dssp ---SHHHHH-HHHHHHHHTT--EEEEEEEE--HHHHH
T ss_pred CchHHHHHH-HHHHHHHHcC-CCEEEEEECCCHHHHH
Confidence 765322111 1122112223 4556665555555443
No 313
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.58 E-value=0.064 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999865
No 314
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.54 E-value=0.02 Score=53.64 Aligned_cols=72 Identities=17% Similarity=0.131 Sum_probs=44.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-C
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-S 197 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~ 197 (331)
.-+++-|+|.+|+||||||..++..... .-...+|++....++.. .+.++....+...+ .
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 3467889999999999999876643221 22345677665544433 23444444444433 3
Q ss_pred CceeEEEEeCCC
Q 020066 198 SEMLLIALDGLC 209 (331)
Q Consensus 198 ~kr~LlVLDdvw 209 (331)
+..-|||+|.|-
T Consensus 132 ~~~~lIVIDSva 143 (325)
T cd00983 132 GAVDLIVVDSVA 143 (325)
T ss_pred cCCCEEEEcchH
Confidence 456799999874
No 315
>PRK04040 adenylate kinase; Provisional
Probab=95.51 E-value=0.011 Score=50.95 Aligned_cols=23 Identities=17% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|+|++|+||||+++.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999998774
No 316
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.50 E-value=0.065 Score=50.14 Aligned_cols=46 Identities=13% Similarity=0.221 Sum_probs=31.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCc----CceEEEEeCCCCCc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF----PRHIWFSVGKILDL 181 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~ 181 (331)
.-.++-|+|.+|+|||+|+.+++-.......+ ...+|++...+|+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~ 150 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP 150 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCH
Confidence 45688899999999999997776432221111 36778887776553
No 317
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.50 E-value=0.04 Score=50.28 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=31.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhcccc--CCCcCceEEEEeCCCCCc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDI--VSRFPRHIWFSVGKILDL 181 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~~~ 181 (331)
..++|.|-.|+|||+|+..+.++... +.+-+..+++.+.+....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~re 115 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMED 115 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHH
Confidence 45789999999999999888775431 123456778777766543
No 318
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.50 E-value=0.093 Score=48.11 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.++.-
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl 53 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhh
Confidence 47999999999999999999753
No 319
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.50 E-value=0.14 Score=47.24 Aligned_cols=88 Identities=14% Similarity=0.072 Sum_probs=50.1
Q ss_pred HHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhccccCCCc----CceEEEEeCCCCCcc---------------
Q 020066 123 VDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF----PRHIWFSVGKILDLS--------------- 182 (331)
Q Consensus 123 ~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~--------------- 182 (331)
++.+.++|... ....+-+.|||-+|.|||++++++...+-....= -.++.|.....++..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 33444444433 3345668899999999999999988654221110 135556665665544
Q ss_pred --ccHHHHHHHHHhccC-CceeEEEEeCCCC
Q 020066 183 --TVMNVITIRCKEIPS-SEMLLIALDGLCD 210 (331)
Q Consensus 183 --~~~~~l~~~l~~~l~-~kr~LlVLDdvw~ 210 (331)
.....+.......++ -+--+||+|.+.+
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~ 156 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHN 156 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHH
Confidence 233333333223322 2355899999976
No 320
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.5 Score=43.61 Aligned_cols=140 Identities=9% Similarity=-0.050 Sum_probs=76.5
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc-----------CCCcCceEEEEeCCC-CCcc-ccHHHHHHH
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI-----------VSRFPRHIWFSVGKI-LDLS-TVMNVITIR 191 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-----------~~~F~~~~wv~vs~~-~~~~-~~~~~l~~~ 191 (331)
.+.+.+.. +.-..-.-++|..|+||+++|..+...--. ....+...|+.-... .... +....+...
T Consensus 8 ~L~~~i~~-~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~ 86 (290)
T PRK05917 8 ALIQRVRD-QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQ 86 (290)
T ss_pred HHHHHHHc-CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHH
Confidence 34444442 233456678999999999999766432211 111222233321111 1111 223333333
Q ss_pred HHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhh-ccCCccccccccCC-----ChHH
Q 020066 192 CKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATM-MKQTVPEAEHLIYF-----SESN 263 (331)
Q Consensus 192 l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~-~~~~~~~~~~l~~L-----~~~~ 263 (331)
+... ..++.=++|+|++...+.+.++.++..+-... .++.+|++|.+.+ +... .+.+..+ .+.++ ++++
T Consensus 87 ~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp-~~~~fiL~~~~~~~ll~TI~SRcq~~--~~~~~~~~~i~~~~ 163 (290)
T PRK05917 87 IWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPP-QHGVIILTSAKPQRLPPTIRSRSLSI--HIPMEEKTLVSKED 163 (290)
T ss_pred HhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCC-CCeEEEEEeCChhhCcHHHHhcceEE--EccchhccCCCHHH
Confidence 3322 34666688999999988889999988886655 6677666666644 4322 3334445 55543 4455
Q ss_pred HHHHH
Q 020066 264 SWSNL 268 (331)
Q Consensus 264 s~~Lf 268 (331)
+..+.
T Consensus 164 ~~~l~ 168 (290)
T PRK05917 164 IAYLI 168 (290)
T ss_pred HHHHH
Confidence 54433
No 321
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.49 E-value=0.098 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999863
No 322
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=95.49 E-value=0.054 Score=54.96 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||++.+..
T Consensus 370 ~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 370 KTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999865
No 323
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.48 E-value=0.074 Score=47.10 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999975
No 324
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.078 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999753
No 325
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.46 E-value=0.011 Score=49.51 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|.++|++|+||||+|+.+...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 457889999999999999999874
No 326
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=95.45 E-value=0.073 Score=54.15 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=20.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-..++|+|..|+|||||++.+..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g 383 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQR 383 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcc
Confidence 345789999999999999999864
No 327
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.45 E-value=0.096 Score=52.91 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCchhHH-HHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTH-IAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTt-La~~v~~~ 160 (331)
.-.||.|||-.|+|||| |++++|.+
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~ed 395 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYED 395 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHhc
Confidence 34688899999999987 67888875
No 328
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.44 E-value=0.016 Score=49.18 Aligned_cols=87 Identities=13% Similarity=0.011 Sum_probs=48.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhc-cCCceeEEEEeCCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKEI-PSSEMLLIALDGLCDLN 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~ 212 (331)
...+-+.|..|+|||.||+.+...-.+ +.....+-++.+.-.... .....+...-..+ .....-+|+||++...+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 457788999999999999998774321 222333334333222200 0000000000000 00112299999999988
Q ss_pred H-----------HhHHHHHHhhc
Q 020066 213 D-----------DNLANLRLLVT 224 (331)
Q Consensus 213 ~-----------~~~~~l~~~l~ 224 (331)
. ..|+.|+..+.
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHHHhc
Confidence 8 88988888774
No 329
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.44 E-value=0.013 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++|.|+|..|+|||||++.+.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998874
No 330
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.44 E-value=0.084 Score=48.42 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.++.-
T Consensus 34 e~~~i~G~nGaGKSTLl~~i~G~ 56 (279)
T PRK13635 34 EWVAIVGHNGSGKSTLAKLLNGL 56 (279)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999753
No 331
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.43 E-value=0.0087 Score=53.02 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|.|..|+||||||+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 332
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.14 Score=49.67 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=20.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++++|..|+||||+...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999987754
No 333
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.022 Score=56.83 Aligned_cols=126 Identities=15% Similarity=0.111 Sum_probs=77.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc----ccHHHHHHHHHhccCCceeEEEEeCCCCC-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----TVMNVITIRCKEIPSSEMLLIALDGLCDL- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----~~~~~l~~~l~~~l~~kr~LlVLDdvw~~- 211 (331)
..=|-+||.+|+|||-||++|.|... -.| ++|-.+.-.. ++...+...+++.-..-+|+|.||.++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag--~NF-----isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~ 617 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAG--ANF-----ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALV 617 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhcc--Cce-----EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcC
Confidence 34466899999999999999999542 233 3332221111 34444444555556677999999988642
Q ss_pred ----CHH------hHHHHHHhhcC--CCCCCcEEEEecCCchHHhh--ccC---CccccccccCCChHHHHHHHhhhC
Q 020066 212 ----NDD------NLANLRLLVTN--MDLVGFYVLVTTQSRSVATM--MKQ---TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ----~~~------~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~~--~~~---~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+.. ..+.|+.-+.. .. .|--||-.|..+++... ..+ .+.. -+..-+.+|-..+++...
T Consensus 618 p~R~~~~s~~s~RvvNqLLtElDGl~~R-~gV~viaATNRPDiIDpAiLRPGRlDk~L--yV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 618 PRRSDEGSSVSSRVVNQLLTELDGLEER-RGVYVIAATNRPDIIDPAILRPGRLDKLL--YVGLPNAEERVAILKTIT 692 (802)
T ss_pred cccCCCCchhHHHHHHHHHHHhcccccc-cceEEEeecCCCcccchhhcCCCccCcee--eecCCCHHHHHHHHHHHh
Confidence 111 22344444443 33 67778888877775422 222 2344 477778888888888755
No 334
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=95.43 E-value=0.017 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.4
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
++|+|.|-||+||||+|..+..
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 6888899999999999976543
No 335
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.42 E-value=0.087 Score=49.91 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=59.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC--------------ccccHHHHHHHHHhccCCceeE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD--------------LSTVMNVITIRCKEIPSSEMLL 202 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--------------~~~~~~~l~~~l~~~l~~kr~L 202 (331)
-..+.|.|..|+||||+.+.+.+. +..+...+++. +.++.. ...........+...+...+=.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCE
Confidence 467889999999999999987762 22233333332 111100 0011123445566778888899
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
|++|.+.+ .+.+....... . .|-.|+.|+...+++.
T Consensus 199 i~vgEird--~~~~~~~l~aa---~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 199 ILIGEMRD--LETVELALTAA---E-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred EEEeCCCC--HHHHHHHHHHH---H-cCCcEEEEEcCCCHHH
Confidence 99999986 34444433322 2 5656787877766554
No 336
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.40 E-value=0.81 Score=43.90 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+++.++|..|+||||++..+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999888753
No 337
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.40 E-value=0.13 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.|++|+|..|+|||||.+.+..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 35899999999999999998865
No 338
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.39 E-value=0.0097 Score=51.34 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.0
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 339
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.053 Score=49.70 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=49.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---------------------ccHHHHHHHHH
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---------------------TVMNVITIRCK 193 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---------------------~~~~~l~~~l~ 193 (331)
+.-+++=|+|..|+||||||.+++-..+. .-...+|++.-..++.. .....+...+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~--~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK--PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc--CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 44578899999999999999777654332 22367888887777765 12223333444
Q ss_pred hccCCceeEEEEeCCCC
Q 020066 194 EIPSSEMLLIALDGLCD 210 (331)
Q Consensus 194 ~~l~~kr~LlVLDdvw~ 210 (331)
.....+--|+|+|.|-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 44444567999998854
No 340
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.38 E-value=0.012 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998764
No 341
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=95.37 E-value=0.058 Score=56.10 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||++.+..
T Consensus 501 ~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 501 SKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999864
No 342
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.019 Score=58.23 Aligned_cols=146 Identities=15% Similarity=0.180 Sum_probs=82.5
Q ss_pred cHHHHHHHHhcC----CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC---cc--------ccHH
Q 020066 122 SVDSVKNALLRD----GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD---LS--------TVMN 186 (331)
Q Consensus 122 ~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~---~~--------~~~~ 186 (331)
-+++|++.|--. .-.-+++.+||++|+|||.|++.|... ....|-. +++..--| +. .-..
T Consensus 331 VKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~RkfvR---~sLGGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 331 VKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFVR---ISLGGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEEE---EecCccccHHHhccccccccccCCh
Confidence 677888877433 334479999999999999999999873 3334411 12222211 11 1112
Q ss_pred HHHHHHHhccCCceeEEEEeCCCCCCH----HhHHHHHHhhcCC-C-----------CCCcEE-EEecCCch--H-Hhhc
Q 020066 187 VITIRCKEIPSSEMLLIALDGLCDLND----DNLANLRLLVTNM-D-----------LVGFYV-LVTTQSRS--V-ATMM 246 (331)
Q Consensus 187 ~l~~~l~~~l~~kr~LlVLDdvw~~~~----~~~~~l~~~l~~~-~-----------~~gs~I-IvTTR~~~--v-a~~~ 246 (331)
.+...+ +..+.+.-|++||.++.... +.-..++..|.+. + .-=|.| .|||-|.- + +..+
T Consensus 406 rIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLl 484 (782)
T COG0466 406 KIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLL 484 (782)
T ss_pred HHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHh
Confidence 222222 22355678999999876422 1122333333211 1 011454 45554321 1 1233
Q ss_pred cCCccccccccCCChHHHHHHHhhhCCCC
Q 020066 247 KQTVPEAEHLIYFSESNSWSNLNCELPPS 275 (331)
Q Consensus 247 ~~~~~~~~~l~~L~~~~s~~Lf~~~af~~ 275 (331)
....++ ++.+-.++|=.++-+++..+.
T Consensus 485 DRMEiI--~lsgYt~~EKl~IAk~~LiPk 511 (782)
T COG0466 485 DRMEVI--RLSGYTEDEKLEIAKRHLIPK 511 (782)
T ss_pred cceeee--eecCCChHHHHHHHHHhcchH
Confidence 445678 899999999999988887654
No 343
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.35 E-value=0.09 Score=46.82 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T PRK11614 32 EIVTLIGANGAGKTTLLGTLCG 53 (237)
T ss_pred cEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999999975
No 344
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.34 E-value=0.014 Score=51.08 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 129 ALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 129 ~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
|+..+....+.|.|+|..|+|||||++.+.+.
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34444456788899999999999999998753
No 345
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.34 E-value=0.087 Score=53.46 Aligned_cols=23 Identities=9% Similarity=0.148 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|.|||||++.+..
T Consensus 366 G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 366 GEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999975
No 346
>PRK00625 shikimate kinase; Provisional
Probab=95.33 E-value=0.012 Score=50.16 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=19.0
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|.++||.|+||||+++.+.+.
T Consensus 3 I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 779999999999999999764
No 347
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.33 E-value=0.016 Score=49.15 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-.+|.|+|.+|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998874
No 348
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.31 E-value=0.092 Score=47.38 Aligned_cols=24 Identities=8% Similarity=0.131 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|.|||||.+.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 357899999999999999999763
No 349
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=95.30 E-value=0.086 Score=54.74 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..++|+|..|+|||||++.+..-
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~ 506 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRL 506 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999753
No 350
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=95.29 E-value=0.14 Score=45.03 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=30.9
Q ss_pred ceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhcc
Q 020066 199 EMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMK 247 (331)
Q Consensus 199 kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~ 247 (331)
..-++|||||... +......+...+.... +++.+||||.++.+...+.
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~-~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELS-KQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHT-TTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 3558999999875 4445566666665544 6789999999998877653
No 351
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.29 E-value=0.17 Score=44.26 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=57.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc---ccC----------CCcCceEEEEeCCCCCcc-------ccHHHHHHHHHhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD---DIV----------SRFPRHIWFSVGKILDLS-------TVMNVITIRCKEIP 196 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~---~~~----------~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~~~l 196 (331)
-.++.|.|..|.||||+.+.+.... ++. ..|+.. ........+.. ....++...+. +
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I-~~~~~~~d~~~~~~S~fs~e~~~~~~il~--~ 105 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRL-LSRLSNDDSMERNLSTFASEMSETAYILD--Y 105 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhhe-eEecCCccccchhhhHHHHHHHHHHHHHH--h
Confidence 4789999999999999988875321 010 112211 11111111111 12222222222 2
Q ss_pred CCceeEEEEeCCCCC-CHHh----HHHHHHhhcCCCCCCcEEEEecCCchHHhhccC
Q 020066 197 SSEMLLIALDGLCDL-NDDN----LANLRLLVTNMDLVGFYVLVTTQSRSVATMMKQ 248 (331)
Q Consensus 197 ~~kr~LlVLDdvw~~-~~~~----~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~~ 248 (331)
..++-|++||..... +..+ ...+...+. . .|+.+|++|.+.+++..+..
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLI--K-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--h-cCCEEEEECChHHHHHHhhc
Confidence 356889999997442 2222 122333443 2 46899999999998876653
No 352
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.27 E-value=0.084 Score=49.16 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=32.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCCc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILDL 181 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~ 181 (331)
.-.++-|+|.+|+|||||+.+++-....... =...+|++....|+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~ 143 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRP 143 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCH
Confidence 4578889999999999999877654322111 126789988776654
No 353
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.093 Score=48.04 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||++.+..-
T Consensus 31 e~~~i~G~NGsGKSTLl~~l~Gl 53 (277)
T PRK13652 31 SRIAVIGPNGAGKSTLFRHFNGI 53 (277)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999753
No 354
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.098 Score=47.90 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 34 e~~~I~G~nGsGKSTLl~~l~G 55 (277)
T PRK13642 34 EWVSIIGQNGSGKSTTARLIDG 55 (277)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999975
No 355
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.26 E-value=0.025 Score=52.18 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=20.8
Q ss_pred CCcEEEEEEecCCchhHHHHHHHh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
...-+|+|.|..|+||||||+.+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~ 83 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQ 83 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999997664
No 356
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=95.26 E-value=0.049 Score=52.93 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||++.+.+
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~ 184 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTR 184 (444)
T ss_pred CEEEEECCCCCChhHHHHHhcc
Confidence 4689999999999999998876
No 357
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.25 E-value=0.012 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|.|..|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998764
No 358
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=95.24 E-value=0.076 Score=55.25 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999865
No 359
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.24 E-value=0.088 Score=49.23 Aligned_cols=46 Identities=7% Similarity=0.139 Sum_probs=31.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCC----CcCceEEEEeCCCCCc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVS----RFPRHIWFSVGKILDL 181 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~ 181 (331)
.-+++-|+|.+|+|||+|+..++-...... .=...+|++...+|+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~ 144 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRP 144 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCH
Confidence 346888999999999999977653222211 1135678887776654
No 360
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.24 E-value=0.016 Score=49.23 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4679999999999999999988864
No 361
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.24 E-value=0.012 Score=50.20 Aligned_cols=22 Identities=9% Similarity=0.302 Sum_probs=19.6
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998774
No 362
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.22 E-value=0.12 Score=48.94 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++++|..|.|||||.+.+..
T Consensus 67 Gei~gLlGpNGaGKSTLl~~L~G 89 (340)
T PRK13536 67 GECFGLLGPNGAGKSTIARMILG 89 (340)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999976
No 363
>PRK09354 recA recombinase A; Provisional
Probab=95.22 E-value=0.036 Score=52.38 Aligned_cols=72 Identities=15% Similarity=0.137 Sum_probs=44.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-C
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-S 197 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~ 197 (331)
.-+++-|+|..|+|||||+.++.....- .=...+|+.....++.. .+.++....+...+ .
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~--~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3468889999999999999776543221 12345677655544433 23344444444333 3
Q ss_pred CceeEEEEeCCC
Q 020066 198 SEMLLIALDGLC 209 (331)
Q Consensus 198 ~kr~LlVLDdvw 209 (331)
+..-|||+|.|-
T Consensus 137 ~~~~lIVIDSva 148 (349)
T PRK09354 137 GAVDLIVVDSVA 148 (349)
T ss_pred CCCCEEEEeChh
Confidence 456799999975
No 364
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.21 E-value=0.23 Score=44.10 Aligned_cols=106 Identities=13% Similarity=0.025 Sum_probs=61.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccc------------cC-CCcCceEEEEeCCCCCcc-------ccHHHHHHHHHhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDD------------IV-SRFPRHIWFSVGKILDLS-------TVMNVITIRCKEI 195 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~------------~~-~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~~~ 195 (331)
.-+++.|.|..|.||||+.+.+....- .+ ..|+ .++..+....+.. .+..++...+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~-~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~- 107 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFD-SVLTRMGASDSIQHGMSTFMVELSETSHILSN- 107 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccc-eEEEEecCccccccccchHHHHHHHHHHHHHh-
Confidence 346788999999999999988865210 00 1122 2333333332322 233444444433
Q ss_pred cCCceeEEEEeCCCCC-C---HHh-HHHHHHhhcCCCCCCcEEEEecCCchHHhhc
Q 020066 196 PSSEMLLIALDGLCDL-N---DDN-LANLRLLVTNMDLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 196 l~~kr~LlVLDdvw~~-~---~~~-~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~ 246 (331)
..++-|++||..... + ... -..+...+... .++.+|++|...+++...
T Consensus 108 -~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~--~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 108 -CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE--KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred -CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc--cCCeEEEEcccHHHHHHH
Confidence 246899999997432 1 111 12344444322 478999999999987654
No 365
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=95.21 E-value=0.091 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.+..-
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl 73 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGS 73 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999864
No 366
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.21 E-value=0.29 Score=42.45 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|.|||||.+.+..-
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 357899999999999999999764
No 367
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.20 E-value=0.014 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++|.|+|..|+|||||++.+.+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47899999999999999999873
No 368
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.20 E-value=0.018 Score=48.11 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|-|.|.+|+||||||+.+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 369
>PRK10867 signal recognition particle protein; Provisional
Probab=95.19 E-value=0.061 Score=52.45 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=19.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
...+|.++|.+|+||||.+..+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHH
Confidence 46899999999999999665554
No 370
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=95.17 E-value=0.13 Score=43.07 Aligned_cols=108 Identities=13% Similarity=0.033 Sum_probs=54.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc---c--------cCCCcCceEEE----EeCCCCCc-cccHHHHHHHHHhccCCcee
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD---D--------IVSRFPRHIWF----SVGKILDL-STVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~---~--------~~~~F~~~~wv----~vs~~~~~-~~~~~~l~~~l~~~l~~kr~ 201 (331)
++..|+|+.|.|||++.+.+.--. . ++..+..-.|- ......+. ....-.+...+...-.+++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 688999999999999998863210 0 00111111111 00101110 01112222222211113688
Q ss_pred EEEEeCCCCC-CHHhHHHHHHhhcCC-CCCCcEEEEecCCchHHhhc
Q 020066 202 LIALDGLCDL-NDDNLANLRLLVTNM-DLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 202 LlVLDdvw~~-~~~~~~~l~~~l~~~-~~~gs~IIvTTR~~~va~~~ 246 (331)
+++||..-.. +...-..+...+... . .|+.+|++|.+.+....+
T Consensus 102 llllDEp~~gld~~~~~~l~~~l~~~~~-~~~~vii~TH~~~~~~~~ 147 (162)
T cd03227 102 LYILDEIDRGLDPRDGQALAEAILEHLV-KGAQVIVITHLPELAELA 147 (162)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHhh
Confidence 9999997654 333333333333221 2 357899999988877643
No 371
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.16 E-value=0.019 Score=49.88 Aligned_cols=27 Identities=19% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....+|.|+|.+|+||||||+.+...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456679999999999999999998763
No 372
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.14 E-value=0.13 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (274)
T PRK13644 29 EYIGIIGKNGSGKSTLALHLNGL 51 (274)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999863
No 373
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.14 E-value=0.13 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 31 e~~~l~G~NGaGKSTLl~~l~G 52 (303)
T TIGR01288 31 ECFGLLGPNGAGKSTIARMLLG 52 (303)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 374
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=95.13 E-value=0.074 Score=53.77 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 358 G~~v~IvG~sGsGKSTLl~lL~g 380 (571)
T TIGR02203 358 GETVALVGRSGSGKSTLVNLIPR 380 (571)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999998864
No 375
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.13 E-value=0.088 Score=45.04 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.++.|.|+.|+|||||++.++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 567889999999999999999853
No 376
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.12 E-value=0.017 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=19.7
Q ss_pred EEEEecCCchhHHHHHHHhhccc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDD 162 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~ 162 (331)
|.|+|..|+|||||.+.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 67999999999999999987553
No 377
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.12 E-value=0.016 Score=50.43 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDD 162 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 162 (331)
..+|+|-||=|+||||||+.+.++-.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999988543
No 378
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.1 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.+..-
T Consensus 42 e~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 42 KTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 57999999999999999999763
No 379
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.11 Score=47.59 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||.+.+..
T Consensus 37 e~~~l~G~nGsGKSTLl~~l~G 58 (280)
T PRK13633 37 EFLVILGRNGSGKSTIAKHMNA 58 (280)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 380
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=95.10 E-value=0.014 Score=47.50 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 381
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.09 E-value=0.18 Score=44.41 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|.|||||++.+..-
T Consensus 40 Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 40 GEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999753
No 382
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=95.07 E-value=0.1 Score=54.29 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 507 Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 507 GEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999999975
No 383
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.07 E-value=0.015 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++.++|.+|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998774
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=95.06 E-value=0.1 Score=46.76 Aligned_cols=23 Identities=9% Similarity=0.079 Sum_probs=18.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.++.|.|.+|+|||+|+..+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~ 86 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAV 86 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH
Confidence 35677889999999999977644
No 385
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.06 E-value=0.017 Score=49.10 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999998764
No 386
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=95.05 E-value=0.13 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~llG~sGsGKSTLLr~iaG 52 (356)
T PRK11650 31 EFIVLVGPSGCGKSTLLRMVAG 52 (356)
T ss_pred CEEEEECCCCCcHHHHHHHHHC
Confidence 4789999999999999999975
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.04 E-value=0.27 Score=47.86 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|.++|..|+||||++..+..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999977753
No 388
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.04 E-value=0.13 Score=43.11 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=29.8
Q ss_pred HhccC-CceeEEEEeCCCCC---CHHhHHHHHHhhcCCCCCCcEEEEecCCch
Q 020066 193 KEIPS-SEMLLIALDGLCDL---NDDNLANLRLLVTNMDLVGFYVLVTTQSRS 241 (331)
Q Consensus 193 ~~~l~-~kr~LlVLDdvw~~---~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~ 241 (331)
++.+. ++-=|||||.+-.. ..-..+.+...+.... .+.-||+|.|+..
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-~~~evIlTGr~~p 139 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-EDLELVLTGRNAP 139 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-CCCEEEEECCCCC
Confidence 33443 34459999997532 1223455555555444 6779999999865
No 389
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.03 E-value=0.21 Score=42.77 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..+.|+|..|+|||||++.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45789999999999999998875
No 390
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=95.00 E-value=0.11 Score=49.27 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 33 e~~~llGpsGsGKSTLLr~IaG 54 (351)
T PRK11432 33 TMVTLLGPSGCGKTTVLRLVAG 54 (351)
T ss_pred CEEEEECCCCCcHHHHHHHHHC
Confidence 4789999999999999999975
No 391
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.99 E-value=0.04 Score=54.05 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=28.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL 179 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 179 (331)
..++|+|-.|+|||||+..+.+... +.+-+.++++.+.+..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~ 184 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERS 184 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcch
Confidence 4689999999999999977766432 2244666666665443
No 392
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.99 E-value=0.11 Score=52.74 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 341 G~~~~ivG~sGsGKSTLl~ll~g 363 (569)
T PRK10789 341 GQMLGICGPTGSGKSTLLSLIQR 363 (569)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999865
No 393
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.98 E-value=0.018 Score=50.07 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+|+|+|..|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 467999999999999999999874
No 394
>PRK13947 shikimate kinase; Provisional
Probab=94.98 E-value=0.017 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 395
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.97 E-value=0.26 Score=45.81 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHH---hcCCCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 123 VDSVKNAL---LRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 123 ~~~l~~~L---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..+|.++| -+.+.....|.|+|.+|+|||++...+....
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 44555555 3334455678899999999999999988653
No 396
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.94 E-value=0.074 Score=51.83 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..++|+|..|+|||||++.+.+.
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~ 181 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARN 181 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999998874
No 397
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.054 Score=50.21 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=44.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccC--CCcCceEEEEeCCC--C----Ccc-ccHHHHHHHHHhccCCce--eEEEEe
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIV--SRFPRHIWFSVGKI--L----DLS-TVMNVITIRCKEIPSSEM--LLIALD 206 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~--~----~~~-~~~~~l~~~l~~~l~~kr--~LlVLD 206 (331)
++|-+.|++|.|||+|.+.++++-.++ +.|.....+.++.. | +.. .....+..++.+.+.++. .++.+|
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 678899999999999999999976554 34444444443221 1 111 223344455566666554 455678
Q ss_pred CCCC
Q 020066 207 GLCD 210 (331)
Q Consensus 207 dvw~ 210 (331)
.|.+
T Consensus 258 EVES 261 (423)
T KOG0744|consen 258 EVES 261 (423)
T ss_pred HHHH
Confidence 7754
No 398
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.92 E-value=0.11 Score=47.85 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+..++.|+|..|+|||||...+.+.
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999888773
No 399
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=94.92 E-value=0.089 Score=43.95 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.6
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|.|+|.+|+|||||...+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999888764
No 400
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.91 E-value=0.11 Score=49.03 Aligned_cols=47 Identities=13% Similarity=0.122 Sum_probs=32.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCCcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILDLS 182 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~ 182 (331)
.-.++-|+|.+|+|||+|+..++-....... -..++|++...+|+..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~e 172 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQ 172 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHH
Confidence 4567889999999999999877643222111 1257798887766543
No 401
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.17 Score=48.46 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.++.++|..|+||||++.++...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468889999999999999888764
No 402
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.89 E-value=0.033 Score=56.00 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=29.7
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.-+.++.|....+...+|+|.|..|+||||||+.+...
T Consensus 50 ~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 50 VVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred hhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 334445555544567889999999999999999999763
No 403
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=94.89 E-value=0.15 Score=50.31 Aligned_cols=57 Identities=11% Similarity=0.045 Sum_probs=33.4
Q ss_pred HHHHHhccCCceeEEEEeCCCCC-CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhcc
Q 020066 189 TIRCKEIPSSEMLLIALDGLCDL-NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMMK 247 (331)
Q Consensus 189 ~~~l~~~l~~kr~LlVLDdvw~~-~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~ 247 (331)
...|.+.|=-++.||.||+=.+. +.+.-.-|-..+.... .+ .++|++|+++-...++
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d-~~-~lVi~sh~QDfln~vC 286 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD-RI-ILVIVSHSQDFLNGVC 286 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc-Cc-eEEEEecchhhhhhHh
Confidence 34455556677999999985543 2222222334444333 33 7899999988554443
No 404
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.88 E-value=0.23 Score=45.26 Aligned_cols=101 Identities=12% Similarity=0.064 Sum_probs=54.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---------ccHHHHHHHHHhccCCceeEEEEe
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---------TVMNVITIRCKEIPSSEMLLIALD 206 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---------~~~~~l~~~l~~~l~~kr~LlVLD 206 (331)
.-.++.|.|..|+||||++..+.+. +...-..++.+.-+..+... .........+...++..+=.|+++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~--i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSE--LNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhh--hCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEec
Confidence 3457889999999999999877542 11110111222111111110 001124455666777778899999
Q ss_pred CCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 207 GLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 207 dvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
.+.+. +....+..... .|-.++-|..-.++..
T Consensus 157 EiR~~--e~a~~~~~aa~----tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 157 EIRDA--ETAEIAVQAAL----TGHLVLSTLHTNDAPG 188 (264)
T ss_pred cCCCH--HHHHHHHHHHH----cCCcEEEEeccCCHHH
Confidence 99873 33333333332 4444665656555443
No 405
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.88 E-value=0.054 Score=56.71 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc---ccC-----------CCcCceEEEEeCCCCCcc-------ccHHHHHHHHH
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD---DIV-----------SRFPRHIWFSVGKILDLS-------TVMNVITIRCK 193 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~-----------~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~ 193 (331)
.+..++.|+|..|.|||||.+.+.... +.. ..|+.+ +..+....++. .....+...+.
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 345789999999999999998885431 110 112221 12222211111 12222222222
Q ss_pred hccCCceeEEEEeCCCCC-CHHhHHHH----HHhhcCCCCCCcEEEEecCCchHHhh
Q 020066 194 EIPSSEMLLIALDGLCDL-NDDNLANL----RLLVTNMDLVGFYVLVTTQSRSVATM 245 (331)
Q Consensus 194 ~~l~~kr~LlVLDdvw~~-~~~~~~~l----~~~l~~~~~~gs~IIvTTR~~~va~~ 245 (331)
.+ ..+-|++||..-.. +..+...+ ...+. . .|+.+|+||....+...
T Consensus 399 -~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~-~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 399 -KT-TENSLVLFDELGAGTDPDEGSALAISILEYLL--K-QNAQVLITTHYKELKAL 450 (771)
T ss_pred -hc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--h-cCCEEEEECChHHHHHH
Confidence 22 46899999998753 33333333 33332 2 57899999999887543
No 406
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=94.86 E-value=0.15 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 479 Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 479 GEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999999865
No 407
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.83 E-value=0.074 Score=51.77 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=27.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
-..++|.|..|+|||||.+.+++... -+..+++.+.+.
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGER 199 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGER 199 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccC
Confidence 35789999999999999999987432 234455555444
No 408
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.82 E-value=0.021 Score=47.01 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|.++|++|+||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999764
No 409
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.82 E-value=0.43 Score=44.69 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=84.4
Q ss_pred CCCCCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhc-cccCCCcCceEEEEeCCCCCcc------
Q 020066 115 AETELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMD-DDIVSRFPRHIWFSVGKILDLS------ 182 (331)
Q Consensus 115 ~~~~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~vs~~~~~~------ 182 (331)
+.+.++| +..++-+|+-.. .++..-+.|+|+.|.|||+|.-.+..+ +++.++| .-|......-..
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 4566778 556666666443 344556778999999999999777765 2233333 223333332221
Q ss_pred --------------------ccHHHHHHHHHhc--cCCceeEEEEeCCCCCC-HHhHHHHHHhhc---CCCCCCcEEEEe
Q 020066 183 --------------------TVMNVITIRCKEI--PSSEMLLIALDGLCDLN-DDNLANLRLLVT---NMDLVGFYVLVT 236 (331)
Q Consensus 183 --------------------~~~~~l~~~l~~~--l~~kr~LlVLDdvw~~~-~~~~~~l~~~l~---~~~~~gs~IIvT 236 (331)
++...+...+... ..+-+.+.|+|.++-.- ...---+...|. ....|=|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 2233333333322 22336788887664320 000011222222 122156677899
Q ss_pred cCCchHH-------hhccCCccccccccCCChHHHHHHHhhhCC
Q 020066 237 TQSRSVA-------TMMKQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 237 TR~~~va-------~~~~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
||-...- ..+....+| -+++++-++...++++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~--m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIF--MLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccccHHHHHHHHHHhhcccceee--ccCCCChHHHHHHHHHHhc
Confidence 9865422 222223366 7889999999999998764
No 410
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.82 E-value=0.11 Score=45.81 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=19.5
Q ss_pred EEEEEEecCCchhHHHHHHHh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~ 158 (331)
.++.|.|..|.||||+.+.+.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~ 51 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVA 51 (216)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999984
No 411
>PRK13949 shikimate kinase; Provisional
Probab=94.81 E-value=0.02 Score=48.47 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|.|+|+.|+||||+++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 412
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=94.81 E-value=0.13 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLL~~iaG 51 (369)
T PRK11000 30 EFVVFVGPSGCGKSTLLRMIAG 51 (369)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999975
No 413
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.81 E-value=0.15 Score=45.61 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=17.7
Q ss_pred EEEEEecCCchhHHHHHHHhh
Q 020066 139 FIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+-.|+|.+|+|||+|+..+.-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 456889999999999987764
No 414
>PRK13975 thymidylate kinase; Provisional
Probab=94.80 E-value=0.023 Score=48.92 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.+|.|.|+.|+||||+++.+.+.-
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998743
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.32 Score=46.80 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...++.++|..|+||||.+..+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999887653
No 416
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.80 E-value=0.12 Score=48.31 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=31.3
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCCc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILDL 181 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~ 181 (331)
..-.++-|+|.+|+|||||+..++........ -...+|++....++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~ 144 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRP 144 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCH
Confidence 34678899999999999999887643222111 124578876665443
No 417
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.79 E-value=0.14 Score=46.97 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|.|||||++.+..
T Consensus 33 e~~~i~G~nGaGKSTLl~~i~G 54 (283)
T PRK13636 33 EVTAILGGNGAGKSTLFQNLNG 54 (283)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 418
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=94.79 E-value=0.13 Score=52.45 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 367 Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 367 RGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999865
No 419
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.78 E-value=0.022 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999764
No 420
>PTZ00035 Rad51 protein; Provisional
Probab=94.76 E-value=0.2 Score=47.34 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=30.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccC---C-CcCceEEEEeCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIV---S-RFPRHIWFSVGKILD 180 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~ 180 (331)
.-.++-|+|..|+|||||+..++-..+.. . .=..++|++....|+
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~ 165 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFR 165 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCC
Confidence 45788999999999999998876433321 0 112455777666554
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.75 E-value=0.18 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+++.++|.+|+||||++..+..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998877654
No 422
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.042 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+-|-|.|-+|+|||||+..+...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 344779999999999999999863
No 423
>PRK14530 adenylate kinase; Provisional
Probab=94.73 E-value=0.022 Score=50.08 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 424
>PRK08149 ATP synthase SpaL; Validated
Probab=94.73 E-value=0.085 Score=51.29 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..++|+|..|+|||||...+.+.
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~ 174 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEH 174 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcC
Confidence 346899999999999999988864
No 425
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=94.69 E-value=0.11 Score=47.88 Aligned_cols=89 Identities=18% Similarity=0.240 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHHHHHHHHhccC----cch-HHHHHHHhHhhhhhhhhhhhhhcc
Q 020066 9 LDLVCGRLDSNARAFWN-----NRGMKNLRVSLRKLHNLLRNVREDAI----PNY-LLTDLNGIASDVDGLIDAPMEVSN 78 (331)
Q Consensus 9 v~~l~~kl~~~~~~~~~-----~~~l~~L~~~L~~i~~~l~~ae~~~~----~~~-Wl~~lr~~~yd~eD~ld~~~~~~~ 78 (331)
|.-+++.|..+...|.. ..+++-+..+|+.+|+||+..-.... ++. +..++...||++|.++|.|...-.
T Consensus 298 VdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi~k~~ 377 (402)
T PF12061_consen 298 VDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACISKSV 377 (402)
T ss_pred HHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhhcCCC
Confidence 55566666666333331 28888899999999999998744322 222 999999999999999999863222
Q ss_pred c-----hhhHHHHHHHHHHHHHHH
Q 020066 79 Y-----KEVMRIRERLVRSMDSLK 97 (331)
Q Consensus 79 ~-----~~~~~~~~~i~~i~~~l~ 97 (331)
| ..-..+...|+.++++++
T Consensus 378 P~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 378 PHWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 234567777777776654
No 426
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.68 E-value=0.23 Score=46.67 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=60.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCccccHHHHHHHHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLSTVMNVITIRCK 193 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~ 193 (331)
.++| ...++.+.+..-...-.-|-|+|-.|+||+++|+.++.... -...| +.++..... .+.+...+.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pf---v~v~c~~~~-----~~~~~~~lf 78 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPF---ISLNCAALN-----ENLLDSELF 78 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCe---EEEeCCCCC-----HHHHHHHHc
Confidence 4556 45555555543212223355899999999999999986321 11122 122211111 111111111
Q ss_pred h----------------ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCc
Q 020066 194 E----------------IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSR 240 (331)
Q Consensus 194 ~----------------~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~ 240 (331)
. ......=.|+||+|..........|...+..+.. ...+||.||...
T Consensus 79 g~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred cccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 1 0111223588999998777777777776643210 135888887643
No 427
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.66 E-value=0.046 Score=44.42 Aligned_cols=38 Identities=13% Similarity=0.117 Sum_probs=26.8
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
+++.+.|...-..-.+|.+.|.-|+|||||++.+.+.-
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34444443221234589999999999999999998753
No 428
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=94.66 E-value=0.14 Score=49.36 Aligned_cols=72 Identities=13% Similarity=-0.023 Sum_probs=44.9
Q ss_pred ceeEEEEeCCCCCC---HHhHHHHHH---hhcCCCCCCcEEEEecCCchHHhhcc------CCccccccccCCChHHHHH
Q 020066 199 EMLLIALDGLCDLN---DDNLANLRL---LVTNMDLVGFYVLVTTQSRSVATMMK------QTVPEAEHLIYFSESNSWS 266 (331)
Q Consensus 199 kr~LlVLDdvw~~~---~~~~~~l~~---~l~~~~~~gs~IIvTTR~~~va~~~~------~~~~~~~~l~~L~~~~s~~ 266 (331)
++-+||+||.-... ...|+.|.. .+-.+ +=-.||++|-+........ ..+.+ .|...+.+.|..
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~--nIAHVIFlT~dv~~~k~LskaLPn~vf~tI--~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQN--NIAHVIFLTDDVSYSKPLSKALPNRVFKTI--SLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHhc--CccEEEEECCCCchhhhHHHhCCCCceeEE--eecCCCHHHHHH
Confidence 36789999975431 122333321 22222 3457888887766554332 23467 899999999999
Q ss_pred HHhhhCCC
Q 020066 267 NLNCELPP 274 (331)
Q Consensus 267 Lf~~~af~ 274 (331)
+..++.-.
T Consensus 224 yV~~~L~~ 231 (431)
T PF10443_consen 224 YVLSQLDE 231 (431)
T ss_pred HHHHHhcc
Confidence 98887643
No 429
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.66 E-value=0.078 Score=50.16 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=31.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCC---C-cCceEEEEeCCCCCcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVS---R-FPRHIWFSVGKILDLS 182 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~ 182 (331)
.-.+.=|+|.+|+|||+|+..++-...... . -...+|++...+|+..
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~pe 175 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPD 175 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHH
Confidence 346778999999999999977753322211 1 2356788887766543
No 430
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.65 E-value=0.2 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|||-.|+||||||+.+..
T Consensus 318 E~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999999865
No 431
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.64 E-value=0.26 Score=46.38 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=51.7
Q ss_pred EEEEEecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCccccHHHHHHHHHhc----------------cCCcee
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLSTVMNVITIRCKEI----------------PSSEML 201 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~----------------l~~kr~ 201 (331)
-|-|+|-.|+||+++|+.+++... -...| +-|+.+... .+.+...+... .....=
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf---v~vnc~~~~-----~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPL---VKLNCAALS-----ENLLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCe---EEEeCCCCC-----hHHHHHHHhccccccccCcccccCCchhhCCCC
Confidence 356999999999999999986422 12222 112211111 11122222111 111234
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCC
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQS 239 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~ 239 (331)
.|+||+|..........|...+..+.. ...+||.||..
T Consensus 96 tL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 96 TLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred EEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 689999998777667777776643210 23488888853
No 432
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.63 E-value=0.02 Score=47.86 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=18.4
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|.|+|..|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999998774
No 433
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.63 E-value=0.029 Score=49.03 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++++|+++|..|+|||||..++.+.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999888764
No 434
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=94.63 E-value=0.17 Score=48.47 Aligned_cols=22 Identities=23% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 41 e~~~LlGpsGsGKSTLLr~IaG 62 (375)
T PRK09452 41 EFLTLLGPSGCGKTTVLRLIAG 62 (375)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999975
No 435
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.62 E-value=0.13 Score=46.99 Aligned_cols=135 Identities=10% Similarity=0.125 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEE-EEeCCCCCccccHHHHHHHHH-hccCCcee
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIW-FSVGKILDLSTVMNVITIRCK-EIPSSEML 201 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~l~~~l~-~~l~~kr~ 201 (331)
-+|.+.|.. +.-. .-++|.||+||+||++.+..-.. ..++ +.+++.++..+-.+.+...+. ...++++.
T Consensus 21 ~ri~RvL~~--~~Gh-~LLvG~~GsGr~sl~rLaa~i~~------~~~~~i~~~~~y~~~~f~~dLk~~~~~ag~~~~~~ 91 (268)
T PF12780_consen 21 ARISRVLSQ--PRGH-ALLVGVGGSGRQSLARLAAFICG------YEVFQIEITKGYSIKDFKEDLKKALQKAGIKGKPT 91 (268)
T ss_dssp HHHHHHHCS--TTEE-EEEECTTTSCHHHHHHHHHHHTT------EEEE-TTTSTTTHHHHHHHHHHHHHHHHHCS-S-E
T ss_pred HHHHHHHcC--CCCC-eEEecCCCccHHHHHHHHHHHhc------cceEEEEeeCCcCHHHHHHHHHHHHHHHhccCCCe
Confidence 345555542 2223 34899999999999998764211 1111 223444443333345555444 34788999
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhccC-CccccccccCCChHHHHHHHhhhCC
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMMKQ-TVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
.+++.|-+-.+...++.+-.-+..+.-+| +.|.-..+ +...+.. .... .+ .-+.+..|++|.+++-
T Consensus 92 vfll~d~qi~~~~fLe~in~LL~sGeip~---LF~~eE~~~i~~~l~~~~~~~--~~-~~~~~~~~~~F~~rvr 159 (268)
T PF12780_consen 92 VFLLTDSQIVDESFLEDINSLLSSGEIPN---LFTKEELDNIISSLREEAKAE--GI-SDSRESLYEFFIERVR 159 (268)
T ss_dssp EEEEECCCSSSCHHHHHHHHHHHCSS-TT---TS-TCHHHHHHHHHHHHHHHC--T---SSHHHHHHHHHHHHC
T ss_pred EEEecCcccchHhHHHHHHHHHhCCCCCC---CccHHHHHHHHHHhHHHHHHc--CC-CCchHHHHHHHHHHHH
Confidence 99999876554455677766665443133 33322111 1111111 0111 11 1256788999998763
No 436
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.62 E-value=0.15 Score=42.23 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|.|+|.+|+|||||...+....
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~ 27 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNE 27 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999987653
No 437
>PRK05439 pantothenate kinase; Provisional
Probab=94.60 E-value=0.05 Score=50.69 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....-+|+|.|..|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999999988865
No 438
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.60 E-value=0.058 Score=50.45 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=44.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhccC-C
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIPS-S 198 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l~-~ 198 (331)
-+++-|+|..|+||||||..+....+- .-...+|+.....++.. ...++....+...++ +
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~--~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg 130 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK--QGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSG 130 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTT
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc--ccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcc
Confidence 468999999999999999877663221 22356799888877765 333444444444443 3
Q ss_pred ceeEEEEeCCCC
Q 020066 199 EMLLIALDGLCD 210 (331)
Q Consensus 199 kr~LlVLDdvw~ 210 (331)
.--++|+|.|-.
T Consensus 131 ~~~lVVvDSv~a 142 (322)
T PF00154_consen 131 AVDLVVVDSVAA 142 (322)
T ss_dssp SESEEEEE-CTT
T ss_pred cccEEEEecCcc
Confidence 456899998754
No 439
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=94.59 E-value=0.12 Score=52.21 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|.|||||++.+..
T Consensus 366 Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 366 GETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34789999999999999999875
No 440
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.59 E-value=0.11 Score=50.66 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...++.++|.+|+||||.+..+..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999766544
No 441
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.57 E-value=0.053 Score=49.74 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|+..|.....+..+|+|.|.+|+||+||...+-..
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~ 74 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHH
Confidence 4667777655677889999999999999999877654
No 442
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=94.57 E-value=0.11 Score=45.00 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~ 29 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADN 29 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999888654
No 443
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.35 Score=49.98 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=83.5
Q ss_pred cHHHHHHHHhcC------C-CCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc----ccHHHHHH
Q 020066 122 SVDSVKNALLRD------G-STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----TVMNVITI 190 (331)
Q Consensus 122 ~~~~l~~~L~~~------~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----~~~~~l~~ 190 (331)
+++++++.|-.+ + .-++=+-++|.+|+|||-||++++....+- |+++|.+-=+. .....+..
T Consensus 322 El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGSEFvE~~~g~~asrvr~ 394 (774)
T KOG0731|consen 322 ELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGSEFVEMFVGVGASRVRD 394 (774)
T ss_pred HHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechHHHHHHhcccchHHHHH
Confidence 788888888754 1 224446789999999999999999865442 34444332111 11122223
Q ss_pred HHHhccCCceeEEEEeCCCCC---------------CHHhHHHHHHhhcCCCC-CCcEEEEecCCchHHh--hccC---C
Q 020066 191 RCKEIPSSEMLLIALDGLCDL---------------NDDNLANLRLLVTNMDL-VGFYVLVTTQSRSVAT--MMKQ---T 249 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~---------------~~~~~~~l~~~l~~~~~-~gs~IIvTTR~~~va~--~~~~---~ 249 (331)
.....-...++++.+|.+... ....+++++.-+....+ .|--++-+|...++.. .+.+ .
T Consensus 395 lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfd 474 (774)
T KOG0731|consen 395 LFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFD 474 (774)
T ss_pred HHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccc
Confidence 333334566899999987542 11235566655554331 2223445666665532 2222 3
Q ss_pred ccccccccCCChHHHHHHHhhhCC
Q 020066 250 VPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 250 ~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
+.+ .+..-+.....++|..++-
T Consensus 475 r~i--~i~~p~~~~r~~i~~~h~~ 496 (774)
T KOG0731|consen 475 RQI--QIDLPDVKGRASILKVHLR 496 (774)
T ss_pred cce--eccCCchhhhHHHHHHHhh
Confidence 456 6777788888888887763
No 444
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.54 E-value=0.071 Score=52.21 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=42.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc------------------------------ccHHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS------------------------------TVMNV 187 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~------------------------------~~~~~ 187 (331)
..++|.|-.|+|||||+..+..+.... +=+.++++.+.+..... ...-.
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 468899999999999998765432111 11234455554443321 00111
Q ss_pred HHHHHHhcc---CCceeEEEEeCCCC
Q 020066 188 ITIRCKEIP---SSEMLLIALDGLCD 210 (331)
Q Consensus 188 l~~~l~~~l---~~kr~LlVLDdvw~ 210 (331)
....+.+++ +++..||++|++-.
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecchHH
Confidence 222344444 78999999999854
No 445
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.53 E-value=0.024 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|+|..|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999874
No 446
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.048 Score=51.15 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=71.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhccC-CceeEEEEeCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKEIPS-SEMLLIALDGLCDL 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~l~-~kr~LlVLDdvw~~ 211 (331)
.++=|-++|.+|.|||-||++|.++ ....| +-|..+.-+. ..-..+.+.+.+.-+ ..++.|.+|.++..
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAI 256 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAI 256 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhh
Confidence 3455678999999999999999994 33233 3333222111 222334444555444 45899999988541
Q ss_pred -----------CHH---hHHHHHHhhcCCCC-CCcEEEEecCCchHHhh--ccC---CccccccccCCChHHHHHHHhhh
Q 020066 212 -----------NDD---NLANLRLLVTNMDL-VGFYVLVTTQSRSVATM--MKQ---TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 212 -----------~~~---~~~~l~~~l~~~~~-~gs~IIvTTR~~~va~~--~~~---~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+.+ ..-.|+..+..... ..-|||..|...++... +.+ .+.+ ++..-+.+-=.++|+-+
T Consensus 257 g~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkI--EfplPd~~gR~~Il~IH 334 (406)
T COG1222 257 GAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKI--EFPLPDEEGRAEILKIH 334 (406)
T ss_pred hcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCccccee--ecCCCCHHHHHHHHHHH
Confidence 111 12234444443221 45799999987775422 222 2356 55544444445667654
Q ss_pred C
Q 020066 272 L 272 (331)
Q Consensus 272 a 272 (331)
+
T Consensus 335 t 335 (406)
T COG1222 335 T 335 (406)
T ss_pred h
Confidence 4
No 447
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.52 E-value=0.3 Score=48.84 Aligned_cols=117 Identities=14% Similarity=0.155 Sum_probs=64.9
Q ss_pred CCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCccccHHHHHHH
Q 020066 116 ETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLSTVMNVITIR 191 (331)
Q Consensus 116 ~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~l~~~ 191 (331)
...++| ...++.+.+..-...-.-|-|+|..|+|||++|+.+++... ....| +.|+.....+ ..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~---v~v~c~~~~~-----~~~e~~ 257 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPL---VYLNCAALPE-----SLAESE 257 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCe---EEEEcccCCh-----HHHHHH
Confidence 345677 55566665543322333456999999999999999987422 11222 2232222111 111112
Q ss_pred HHhcc----------------CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCc
Q 020066 192 CKEIP----------------SSEMLLIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSR 240 (331)
Q Consensus 192 l~~~l----------------~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~ 240 (331)
+.... ....=-|+||+|..........|...+..+.. ...|||.||...
T Consensus 258 lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 258 LFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred hcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 21110 01122479999998877777788777653210 145888888644
No 448
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=1.1 Score=41.29 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=49.9
Q ss_pred cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhc-cCCccccccccCCChHHHHHHHhhh
Q 020066 196 PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMM-KQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 196 l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
..+++-++|+|++.......++.++..+-... +++.+|++|.+.+ +...+ +....+ ++.+ +.++..+.+...
T Consensus 101 ~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp-~~t~~iL~t~~~~~lLpTI~SRcq~i--~f~~-~~~~~~~~L~~~ 174 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVNAANSLLKVIEEPQ-SEIYIFLLTNDENKVLPTIKSRTQIF--HFPK-NEAYLIQLLEQK 174 (290)
T ss_pred ccCCcEEEEeehhhhcCHHHHHHHHHHhcCCC-CCeEEEEEECChhhCchHHHHcceee--eCCC-cHHHHHHHHHHc
Confidence 45667789999999988889999998887655 6677777776554 43333 345566 7766 666666666543
No 449
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.50 E-value=0.28 Score=48.49 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.|++++|..|+||||++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHH
Confidence 369999999999999999888753
No 450
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=94.50 E-value=0.21 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..++|+|..|+|||||++.+...
T Consensus 344 G~~~~ivG~sGsGKSTL~~ll~g~ 367 (544)
T TIGR01842 344 GEALAIIGPSGSGKSTLARLIVGI 367 (544)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999753
No 451
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=94.50 E-value=0.25 Score=47.47 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 46 e~~~llGpsGsGKSTLLr~IaG 67 (377)
T PRK11607 46 EIFALLGASGCGKSTLLRMLAG 67 (377)
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5789999999999999999975
No 452
>COG3899 Predicted ATPase [General function prediction only]
Probab=94.49 E-value=0.26 Score=52.35 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 122 SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 122 ~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+.+.|...+..- ...-.++.+.|..|+|||.|++.|..
T Consensus 8 ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~ 46 (849)
T COG3899 8 ELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHK 46 (849)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHH
Confidence 445555544433 45566999999999999999999976
No 453
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.49 E-value=0.33 Score=43.87 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.+..-
T Consensus 48 e~~~i~G~nGsGKSTLl~~l~Gl 70 (257)
T cd03288 48 QKVGICGRTGSGKSSLSLAFFRM 70 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999998763
No 454
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.061 Score=55.07 Aligned_cols=66 Identities=21% Similarity=0.112 Sum_probs=46.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc----ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS----TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~----~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
+=|-.+|.+|.|||-||++|... |. .-|++|-.+.-.. .+.+.+.+.+.+.-..++|.|.+|.+++
T Consensus 706 SGILLYGPPGTGKTLlAKAVATE------cs-L~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVATE------CS-LNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHhh------ce-eeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 35668999999999999999873 21 2245554332222 4556666666666778899999999876
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.48 E-value=0.032 Score=44.91 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 47899999999999999998873
No 456
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.48 E-value=0.086 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++|+|..|+|||||++.+...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l 188 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARA 188 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988753
No 457
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.48 E-value=0.26 Score=45.58 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.++++.|..|.|||||.+.+..
T Consensus 32 ei~gllG~NGAGKTTllk~l~g 53 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAG 53 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999976
No 458
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=94.47 E-value=0.19 Score=43.34 Aligned_cols=23 Identities=13% Similarity=0.299 Sum_probs=20.0
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|+++|..|+|||||...+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~ 24 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE 24 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC
Confidence 37899999999999999997653
No 459
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.46 E-value=0.2 Score=47.82 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 20 ei~~l~G~sGsGKSTLLr~L~G 41 (363)
T TIGR01186 20 EIFVIMGLSGSGKSTTVRMLNR 41 (363)
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5789999999999999999975
No 460
>COG1084 Predicted GTPase [General function prediction only]
Probab=94.46 E-value=2.5 Score=39.47 Aligned_cols=33 Identities=6% Similarity=0.194 Sum_probs=26.6
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh-ccccCCC
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM-DDDIVSR 166 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~-~~~~~~~ 166 (331)
+.+.+.|.|.|++.+|||||.+.+-. ++.+..+
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~Y 198 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPY 198 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCC
Confidence 66788899999999999999999865 3455443
No 461
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.45 E-value=0.028 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999886
No 462
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=94.44 E-value=0.11 Score=50.56 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..++|+|..|+|||||.+.+.+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~ 178 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNA 178 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCC
Confidence 357899999999999999988763
No 463
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.44 E-value=0.026 Score=46.70 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4779999999999999988764
No 464
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.42 E-value=0.08 Score=50.69 Aligned_cols=69 Identities=16% Similarity=0.081 Sum_probs=41.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-------------------ccHHHHHHHHHhccC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-------------------TVMNVITIRCKEIPS 197 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-------------------~~~~~l~~~l~~~l~ 197 (331)
-.++.|.|.+|+|||||+..+.... ...-..++|++.....+.. .+.+.+...+. .
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~---~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE---E 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH---h
Confidence 4588899999999999998876532 1122345666543322110 23344444332 2
Q ss_pred CceeEEEEeCCCC
Q 020066 198 SEMLLIALDGLCD 210 (331)
Q Consensus 198 ~kr~LlVLDdvw~ 210 (331)
.+.-+||+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 3567899999743
No 465
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.42 E-value=0.035 Score=45.66 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|.++|.+|+|||||...+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999887654
No 466
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.42 E-value=0.12 Score=50.16 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++|+|..|+|||||.+.+.+.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~ 160 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARY 160 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999888763
No 467
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.41 E-value=0.077 Score=51.80 Aligned_cols=43 Identities=12% Similarity=0.056 Sum_probs=30.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL 181 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 181 (331)
..++|.|-.|+|||+|+..+..+.. +.+-+.++++-+.+....
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rE 181 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCRE 181 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHH
Confidence 4588999999999999988766532 233467778777666543
No 468
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.24 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.++.++|..|+||||.+.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 46999999999999999987765
No 469
>PRK04182 cytidylate kinase; Provisional
Probab=94.36 E-value=0.032 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~ 23 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 470
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.36 E-value=0.19 Score=50.22 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 51 EivgIiGpNGSGKSTLLkiLaGL 73 (549)
T PRK13545 51 EIVGIIGLNGSGKSTLSNLIAGV 73 (549)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 471
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.36 E-value=0.032 Score=47.33 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|.|+|+.|+|||||++.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 45889999999999999999874
No 472
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.35 E-value=0.16 Score=43.51 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.+.|+|+.|+||+||+..+...
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhc
Confidence 57889999999999999999774
No 473
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.35 E-value=0.33 Score=43.92 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|.|||||.+.+...
T Consensus 37 e~~~i~G~nGsGKSTLl~~iaG~ 59 (257)
T PRK14246 37 SIFGIMGPSGSGKSTLLKVLNRL 59 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999753
No 474
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.35 E-value=0.15 Score=47.92 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++|+|..|+|||||.+.+.+.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~ 92 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG 92 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC
Confidence 56899999999999999988763
No 475
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.35 E-value=0.028 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
|++|+|..|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988874
No 476
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.33 E-value=0.036 Score=48.42 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.-|.|+|.+|+|||||+..+..+.
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE 29 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc
Confidence 457899999999999999888764
No 477
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.32 E-value=0.14 Score=45.91 Aligned_cols=22 Identities=9% Similarity=0.184 Sum_probs=19.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||++.+.-
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~G 52 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNG 52 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcC
Confidence 4788999999999999998753
No 478
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.27 E-value=0.041 Score=47.86 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=24.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV 175 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 175 (331)
++++.+||..|+||||.+-++......+ =..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecC
Confidence 4689999999999999987776543322 223445554
No 479
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.27 E-value=0.039 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999999998874
No 480
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.25 E-value=0.17 Score=46.99 Aligned_cols=75 Identities=13% Similarity=0.004 Sum_probs=41.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhcccc----------CCC----cCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEE
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDI----------VSR----FPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLI 203 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~----------~~~----F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~Ll 203 (331)
..+.|+|..|+||||+++.+.+.-.- .+. +...-|+.+... .........+...|+..+=.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~----~~~~~~~~~l~~aLR~~pD~i 208 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTS----DDAISMTRLLKATLRLRPDRI 208 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEec----CCCCCHHHHHHHHhcCCCCEE
Confidence 34569999999999999988753100 000 001112221110 011134455666677777778
Q ss_pred EEeCCCCCCHHhHHH
Q 020066 204 ALDGLCDLNDDNLAN 218 (331)
Q Consensus 204 VLDdvw~~~~~~~~~ 218 (331)
|+..+... +.|+.
T Consensus 209 ivGEiR~~--ea~~~ 221 (299)
T TIGR02782 209 IVGEVRGG--EALDL 221 (299)
T ss_pred EEeccCCH--HHHHH
Confidence 88888763 44544
No 481
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=94.24 E-value=0.37 Score=48.33 Aligned_cols=114 Identities=16% Similarity=0.138 Sum_probs=60.3
Q ss_pred CCCC---cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCccccHHHHHHHH
Q 020066 118 ELEG---SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLSTVMNVITIRC 192 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l 192 (331)
.++| ...++++.+..- ..+.+ |-|+|-.|+||++||+.+++... -...| +.++.+...+ +.+...+
T Consensus 205 ~~ig~s~~~~~~~~~~~~~A~~~~p-vlI~GE~GtGK~~lA~aiH~~s~r~~~pf---v~inca~~~~-----~~~e~el 275 (520)
T PRK10820 205 QIVAVSPKMRQVVEQARKLAMLDAP-LLITGDTGTGKDLLAYACHLRSPRGKKPF---LALNCASIPD-----DVVESEL 275 (520)
T ss_pred ceeECCHHHHHHHHHHHHHhCCCCC-EEEECCCCccHHHHHHHHHHhCCCCCCCe---EEeccccCCH-----HHHHHHh
Confidence 4556 445555554321 22333 56999999999999999876321 11222 2222222111 1122222
Q ss_pred Hhc---------------c-CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCc
Q 020066 193 KEI---------------P-SSEMLLIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSR 240 (331)
Q Consensus 193 ~~~---------------l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~ 240 (331)
... + ....=.|+||+|..........|...+..+.. ...|||.||...
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred cCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 211 1 11123579999998776666777776654210 124788877654
No 482
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.22 E-value=0.27 Score=47.64 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++.++|.+|+||||++..+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988875
No 483
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.20 E-value=0.05 Score=46.51 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=25.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIW 172 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 172 (331)
.+++.|+|..|+|||||++.+... ....|...++
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh--ccccccccee
Confidence 367889999999999999999873 4445643333
No 484
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.20 E-value=0.29 Score=47.37 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 55 ei~~LvG~NGsGKSTLLr~I~G 76 (400)
T PRK10070 55 EIFVIMGLSGSGKSTMVRLLNR 76 (400)
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4789999999999999999975
No 485
>PRK13946 shikimate kinase; Provisional
Probab=94.20 E-value=0.034 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.|.++|+.|+||||+++.+.+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 486
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=94.19 E-value=0.23 Score=47.28 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 31 e~~~l~GpsGsGKSTLLr~iaGl 53 (353)
T TIGR03265 31 EFVCLLGPSGCGKTTLLRIIAGL 53 (353)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47899999999999999999763
No 487
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.18 E-value=0.21 Score=46.81 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=46.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccc-c---------CCC--c--CceEEEEeCCCCCccccHHHHHHHHHhccCCceeE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDD-I---------VSR--F--PRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLL 202 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~---------~~~--F--~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~L 202 (331)
-.-+.|+|..|+|||||++.+..... + .+. + ...-|+....... . .....+...|+..+=.
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~--~---~~~~ll~~aLR~~PD~ 222 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSID--V---NMTALLKTTLRMRPDR 222 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCC--C---CHHHHHHHHhcCCCCE
Confidence 35677889999999999998875310 0 000 0 1111222111111 1 2344566667777778
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCC
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMD 227 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~ 227 (331)
||+..+... +.|+. ..++..+.
T Consensus 223 IivGEiR~~--Ea~~~-l~A~~tGh 244 (319)
T PRK13894 223 ILVGEVRGP--EALDL-LMAWNTGH 244 (319)
T ss_pred EEEeccCCH--HHHHH-HHHHHcCC
Confidence 899998873 45653 44444444
No 488
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.24 Score=44.03 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||.+.+..-
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~ 48 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGF 48 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999753
No 489
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.18 E-value=0.13 Score=50.97 Aligned_cols=44 Identities=25% Similarity=0.170 Sum_probs=29.7
Q ss_pred EEEEEEecCCchhHHHH-HHHhhccccC-----CCcCceEEEEeCCCCCc
Q 020066 138 RFIHIVGVSGTEVTHIA-HRVFMDDDIV-----SRFPRHIWFSVGKILDL 181 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~ 181 (331)
..++|.|-.|+|||+|| ..+.|...+. ++-...+++.+.+..+.
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rE 239 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSN 239 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHH
Confidence 35789999999999997 6666654221 23345677777766543
No 490
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=94.18 E-value=0.24 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~llGpsGsGKSTLLr~iaG 53 (362)
T TIGR03258 32 ELLALIGKSGCGKTTLLRAIAG 53 (362)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999985
No 491
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.16 E-value=0.36 Score=44.96 Aligned_cols=101 Identities=14% Similarity=-0.011 Sum_probs=54.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcccc-------C---C-CcCceEEEEe--CCCCCccccHHHHHHHHHhccCCceeEE
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDI-------V---S-RFPRHIWFSV--GKILDLSTVMNVITIRCKEIPSSEMLLI 203 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-------~---~-~F~~~~wv~v--s~~~~~~~~~~~l~~~l~~~l~~kr~Ll 203 (331)
-..+.|+|..|+|||||++.+.....- . + .+...-|+.+ ...... ...-.....+...++..+=.|
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQG-LAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCC-cCccCHHHHHHHHhcCCCCeE
Confidence 457889999999999999988753210 0 0 1111112211 111000 111223444556677778889
Q ss_pred EEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 204 ALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 204 VLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
++|.+.. .+.|+ +...+..+. . -++.|+...+++.
T Consensus 223 i~gE~r~--~e~~~-~l~a~~~g~-~--~~i~T~Ha~~~~~ 257 (308)
T TIGR02788 223 ILGELRG--DEAFD-FIRAVNTGH-P--GSITTLHAGSPEE 257 (308)
T ss_pred EEeccCC--HHHHH-HHHHHhcCC-C--eEEEEEeCCCHHH
Confidence 9999987 34554 344443332 2 3577777666443
No 492
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.15 E-value=0.038 Score=47.30 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.0
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|..|+||||+++.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~ 23 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAER 23 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999874
No 493
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.15 E-value=0.037 Score=46.29 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=17.3
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999874
No 494
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.14 E-value=0.066 Score=48.26 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 123 VDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 123 ~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++++.+.....+..+|+|.|.+|.||+||...+...
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~ 52 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRE 52 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHH
Confidence 35667777655556789999999999999999777653
No 495
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=94.14 E-value=0.23 Score=49.59 Aligned_cols=22 Identities=9% Similarity=0.150 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 38 e~~~liG~NGsGKSTLl~~l~G 59 (510)
T PRK15439 38 EVHALLGGNGAGKSTLMKIIAG 59 (510)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 496
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.14 E-value=0.043 Score=42.77 Aligned_cols=22 Identities=27% Similarity=0.231 Sum_probs=19.3
Q ss_pred cEEEEEEecCCchhHHHHHHHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3578999999999999998865
No 497
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=94.12 E-value=0.18 Score=43.12 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=19.0
Q ss_pred EEEEecCCchhHHHHHHHhhcc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~ 161 (331)
|.|+|.+|+|||||...+.++.
T Consensus 3 i~vvG~~~vGKSsLi~~~~~~~ 24 (193)
T cd04118 3 VVMLGKESVGKTSLVERYVHHR 24 (193)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999998887653
No 498
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.037 Score=46.73 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=18.3
Q ss_pred EEEEEecCCchhHHHHHHHh
Q 020066 139 FIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~ 158 (331)
.|+|.|.+|+||||+++.+-
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999998885
No 499
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.11 E-value=0.21 Score=51.82 Aligned_cols=116 Identities=14% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHh
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKE 194 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~ 194 (331)
.++| ....+.+.+..-...-.-|-|+|..|+|||++|+.+++...-. .. ..+.++.....+ ..+...+..
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-~~-~~v~i~c~~~~~-----~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-NR-RMVKMNCAAMPA-----GLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-CC-CeEEEecccCCh-----hHhhhhhcC
Confidence 4667 4555554443222223346699999999999999998743211 11 112222211111 000111100
Q ss_pred ----------------ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCc
Q 020066 195 ----------------IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSR 240 (331)
Q Consensus 195 ----------------~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~ 240 (331)
.-....=.|+||+|..........|...+..+.. .+.|||.||...
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 0111234699999998777777777776643210 235888888654
No 500
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=94.11 E-value=0.039 Score=47.09 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++.|+|..|+|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
Done!