Query 020066
Match_columns 331
No_of_seqs 222 out of 2157
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 11:16:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020066.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020066hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-28 5.1E-33 244.6 14.6 183 120-323 131-347 (549)
2 1vt4_I APAF-1 related killer D 99.9 6.3E-24 2.2E-28 219.2 11.0 178 119-326 130-349 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 2.7E-23 9.2E-28 223.1 14.3 183 115-320 122-336 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.8 5.4E-21 1.8E-25 191.3 11.0 184 115-320 122-336 (591)
5 3qfl_A MLA10; coiled-coil, (CC 99.4 1.2E-12 4E-17 103.0 8.2 66 9-74 3-79 (115)
6 1njg_A DNA polymerase III subu 99.0 6E-09 2.1E-13 90.5 14.1 151 117-273 23-199 (250)
7 2chg_A Replication factor C sm 99.0 6.2E-09 2.1E-13 89.3 12.4 147 117-272 17-174 (226)
8 1w5s_A Origin recognition comp 98.9 3.2E-09 1.1E-13 100.6 7.9 153 117-271 22-227 (412)
9 2qby_B CDC6 homolog 3, cell di 98.8 8E-09 2.7E-13 97.0 6.5 152 117-271 20-209 (384)
10 2qen_A Walker-type ATPase; unk 98.7 1.8E-08 6.2E-13 93.0 8.6 141 116-271 11-215 (350)
11 1sxj_B Activator 1 37 kDa subu 98.7 2.9E-08 1E-12 90.7 9.6 149 117-272 21-179 (323)
12 2fna_A Conserved hypothetical 98.7 4.2E-08 1.4E-12 90.7 10.6 141 116-271 12-221 (357)
13 1fnn_A CDC6P, cell division co 98.7 1.2E-07 4.1E-12 88.9 13.4 153 117-272 17-206 (389)
14 2qby_A CDC6 homolog 1, cell di 98.7 1.4E-08 4.8E-13 94.9 6.6 151 117-272 20-210 (386)
15 2v1u_A Cell division control p 98.7 4.4E-08 1.5E-12 91.7 9.9 153 117-272 19-214 (387)
16 1iqp_A RFCS; clamp loader, ext 98.5 2.5E-07 8.5E-12 84.6 9.1 149 117-272 25-182 (327)
17 1jbk_A CLPB protein; beta barr 98.5 1.3E-07 4.4E-12 79.0 5.3 145 117-268 22-194 (195)
18 1jr3_A DNA polymerase III subu 98.4 2.7E-06 9.1E-11 79.3 13.8 151 117-272 16-191 (373)
19 2chq_A Replication factor C sm 98.3 1.7E-06 5.8E-11 78.7 9.1 148 118-272 18-174 (319)
20 2z4s_A Chromosomal replication 98.2 9.1E-07 3.1E-11 85.2 6.0 129 137-272 130-276 (440)
21 3syl_A Protein CBBX; photosynt 98.2 4.4E-06 1.5E-10 75.9 9.3 130 137-272 67-217 (309)
22 2qz4_A Paraplegin; AAA+, SPG7, 98.2 2.9E-05 1E-09 68.5 14.3 128 137-272 39-190 (262)
23 3bos_A Putative DNA replicatio 98.2 6.1E-07 2.1E-11 78.0 3.0 124 136-272 51-187 (242)
24 1sxj_E Activator 1 40 kDa subu 98.2 1.7E-05 5.8E-10 73.4 12.9 71 199-272 134-206 (354)
25 3h4m_A Proteasome-activating n 98.1 1.2E-05 4E-10 72.2 10.4 130 136-273 50-202 (285)
26 3pvs_A Replication-associated 98.1 2.4E-05 8.1E-10 75.4 11.7 136 124-272 39-178 (447)
27 1sxj_D Activator 1 41 kDa subu 98.0 1.4E-05 4.8E-10 73.8 9.2 150 117-272 37-205 (353)
28 1l8q_A Chromosomal replication 98.0 9.9E-06 3.4E-10 74.4 8.0 139 125-272 25-179 (324)
29 3n70_A Transport activator; si 97.9 4.5E-05 1.5E-09 61.6 9.7 106 122-240 9-116 (145)
30 2gno_A DNA polymerase III, gam 97.9 6.3E-05 2.2E-09 68.7 11.7 142 125-272 8-152 (305)
31 3u61_B DNA polymerase accessor 97.9 5.8E-05 2E-09 69.0 11.4 135 117-265 26-171 (324)
32 1a5t_A Delta prime, HOLB; zinc 97.9 0.00011 3.9E-09 67.8 13.2 131 137-272 24-180 (334)
33 1d2n_A N-ethylmaleimide-sensit 97.9 5.6E-05 1.9E-09 67.5 10.2 129 134-270 61-210 (272)
34 1hqc_A RUVB; extended AAA-ATPa 97.9 0.00011 3.6E-09 67.1 11.5 144 117-272 12-181 (324)
35 2kjq_A DNAA-related protein; s 97.8 1.7E-05 5.7E-10 64.7 5.3 101 121-239 22-124 (149)
36 1sxj_C Activator 1 40 kDa subu 97.8 5.9E-05 2E-09 69.7 9.4 145 118-272 26-182 (340)
37 3ec2_A DNA replication protein 97.8 1.7E-05 5.8E-10 66.3 5.1 24 137-160 38-61 (180)
38 2p65_A Hypothetical protein PF 97.8 1.9E-05 6.5E-10 65.5 5.4 42 117-160 22-66 (187)
39 3uk6_A RUVB-like 2; hexameric 97.8 0.00015 5.2E-09 67.3 11.9 69 200-272 190-272 (368)
40 3pfi_A Holliday junction ATP-d 97.8 0.00021 7.1E-09 65.6 12.4 143 117-272 29-197 (338)
41 2w58_A DNAI, primosome compone 97.7 2.5E-05 8.4E-10 66.4 4.7 36 138-175 55-90 (202)
42 1sxj_A Activator 1 95 kDa subu 97.7 0.00027 9.1E-09 69.3 11.7 142 117-272 39-222 (516)
43 1lv7_A FTSH; alpha/beta domain 97.6 0.00057 2E-08 60.2 12.2 126 139-272 47-195 (257)
44 3eie_A Vacuolar protein sortin 97.6 0.00028 9.4E-09 64.7 9.9 129 137-273 51-198 (322)
45 2bjv_A PSP operon transcriptio 97.5 0.00057 1.9E-08 60.5 11.2 114 118-239 7-150 (265)
46 1qvr_A CLPB protein; coiled co 97.5 0.00048 1.6E-08 71.6 12.1 146 118-270 171-343 (854)
47 3co5_A Putative two-component 97.5 0.00015 5.3E-09 58.2 6.3 101 122-238 12-114 (143)
48 3hu3_A Transitional endoplasmi 97.5 0.00019 6.5E-09 69.8 8.0 128 137-272 238-385 (489)
49 1xwi_A SKD1 protein; VPS4B, AA 97.5 0.00079 2.7E-08 61.8 11.6 129 137-272 45-192 (322)
50 3te6_A Regulatory protein SIR3 97.5 0.001 3.6E-08 60.9 12.2 135 134-272 42-211 (318)
51 3cf0_A Transitional endoplasmi 97.5 0.00033 1.1E-08 63.6 8.8 129 136-272 48-199 (301)
52 3d8b_A Fidgetin-like protein 1 97.5 0.00072 2.5E-08 62.9 11.1 128 137-272 117-264 (357)
53 2ce7_A Cell division protein F 97.4 0.00097 3.3E-08 64.5 11.3 126 139-272 51-199 (476)
54 3pxi_A Negative regulator of g 97.4 0.00072 2.5E-08 69.2 11.0 148 118-272 492-675 (758)
55 3b9p_A CG5977-PA, isoform A; A 97.4 0.0026 9.1E-08 57.0 13.6 127 137-272 54-202 (297)
56 2qp9_X Vacuolar protein sortin 97.4 0.00046 1.6E-08 64.2 8.6 128 138-273 85-231 (355)
57 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0018 6E-08 66.3 13.1 148 118-271 187-361 (758)
58 3pxg_A Negative regulator of g 97.3 0.00057 1.9E-08 66.1 8.1 142 117-272 180-338 (468)
59 2x8a_A Nuclear valosin-contain 97.3 0.0025 8.6E-08 57.0 11.7 126 140-272 47-191 (274)
60 2zan_A Vacuolar protein sortin 97.2 0.0014 4.9E-08 62.8 10.7 124 137-272 167-314 (444)
61 1ojl_A Transcriptional regulat 97.2 0.0036 1.2E-07 56.9 12.8 142 119-270 4-188 (304)
62 3vfd_A Spastin; ATPase, microt 97.2 0.0027 9.2E-08 59.6 12.3 148 117-272 115-295 (389)
63 4b4t_J 26S protease regulatory 97.2 0.0022 7.5E-08 60.6 11.4 128 137-272 182-332 (405)
64 4b4t_L 26S protease subunit RP 97.2 0.0041 1.4E-07 59.4 13.4 129 136-272 214-365 (437)
65 3t15_A Ribulose bisphosphate c 97.2 0.00053 1.8E-08 62.1 6.9 70 136-210 35-110 (293)
66 4fcw_A Chaperone protein CLPB; 97.2 0.001 3.5E-08 60.0 8.7 129 137-272 47-229 (311)
67 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.0003 1E-08 64.5 5.1 68 138-211 124-194 (331)
68 1ofh_A ATP-dependent HSL prote 97.2 0.0012 4.2E-08 59.3 9.1 126 138-271 51-214 (310)
69 2r62_A Cell division protease 97.0 0.00014 4.7E-09 64.6 1.1 126 140-272 47-196 (268)
70 4b4t_H 26S protease regulatory 97.0 0.0048 1.6E-07 59.2 11.4 130 136-272 242-393 (467)
71 2cvh_A DNA repair and recombin 97.0 0.002 6.9E-08 54.8 7.8 36 137-177 20-55 (220)
72 2qgz_A Helicase loader, putati 96.9 0.0011 3.9E-08 60.4 6.2 25 137-161 152-176 (308)
73 3pxi_A Negative regulator of g 96.9 0.0031 1.1E-07 64.5 9.8 142 117-272 180-338 (758)
74 1ixz_A ATP-dependent metallopr 96.9 0.0017 6E-08 56.9 6.8 126 140-272 52-199 (254)
75 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0053 1.8E-07 59.7 10.4 126 140-272 67-214 (499)
76 1iy2_A ATP-dependent metallopr 96.8 0.0024 8.3E-08 56.9 7.1 125 140-272 76-223 (278)
77 4b4t_M 26S protease regulatory 96.8 0.002 6.9E-08 61.5 6.7 129 136-271 214-364 (434)
78 4b4t_I 26S protease regulatory 96.6 0.0088 3E-07 56.8 9.7 129 136-272 215-366 (437)
79 1tue_A Replication protein E1; 96.6 0.0019 6.5E-08 55.3 4.6 24 137-160 58-81 (212)
80 1ye8_A Protein THEP1, hypothet 96.6 0.0073 2.5E-07 50.3 8.0 22 139-160 2-23 (178)
81 1r6b_X CLPA protein; AAA+, N-t 96.5 0.0083 2.8E-07 61.3 10.0 126 137-272 488-666 (758)
82 1um8_A ATP-dependent CLP prote 96.5 0.0053 1.8E-07 57.2 7.8 23 138-160 73-95 (376)
83 3m6a_A ATP-dependent protease 96.5 0.002 6.8E-08 63.5 5.1 129 136-272 107-266 (543)
84 1ypw_A Transitional endoplasmi 96.5 0.0071 2.4E-07 62.4 9.3 129 137-272 238-385 (806)
85 3cf2_A TER ATPase, transitiona 96.5 0.01 3.5E-07 60.8 10.4 128 137-272 238-385 (806)
86 1in4_A RUVB, holliday junction 96.5 0.01 3.6E-07 54.4 9.5 124 136-272 50-193 (334)
87 3jvv_A Twitching mobility prot 96.4 0.0041 1.4E-07 57.8 6.4 100 138-245 124-236 (356)
88 1qvr_A CLPB protein; coiled co 96.4 0.022 7.4E-07 59.1 11.9 98 137-239 588-710 (854)
89 2r44_A Uncharacterized protein 96.3 0.0087 3E-07 54.5 7.9 139 118-272 28-198 (331)
90 2cbz_A Multidrug resistance-as 96.3 0.023 7.8E-07 49.6 10.1 22 138-159 32-53 (237)
91 3c8u_A Fructokinase; YP_612366 96.3 0.003 1E-07 53.8 4.3 25 135-159 20-44 (208)
92 2pze_A Cystic fibrosis transme 96.2 0.053 1.8E-06 46.9 12.1 22 138-159 35-56 (229)
93 2c9o_A RUVB-like 1; hexameric 96.2 0.0072 2.4E-07 58.0 6.9 83 125-210 51-137 (456)
94 1pzn_A RAD51, DNA repair and r 96.2 0.012 3.9E-07 54.6 8.0 44 136-179 130-177 (349)
95 1rz3_A Hypothetical protein rb 96.2 0.0055 1.9E-07 51.9 5.3 36 124-159 8-44 (201)
96 4b4t_K 26S protease regulatory 96.2 0.0051 1.7E-07 58.6 5.4 68 137-209 206-275 (428)
97 1vpl_A ABC transporter, ATP-bi 96.1 0.027 9.3E-07 49.7 9.8 22 138-159 42-63 (256)
98 3lw7_A Adenylate kinase relate 96.1 0.0027 9.3E-08 51.6 2.8 20 138-157 2-21 (179)
99 2b8t_A Thymidine kinase; deoxy 96.0 0.022 7.7E-07 49.2 8.2 98 137-240 12-126 (223)
100 1n0w_A DNA repair protein RAD5 95.9 0.012 4.1E-07 50.7 6.4 41 138-178 25-69 (243)
101 1zp6_A Hypothetical protein AT 95.9 0.0043 1.5E-07 51.7 3.3 24 137-160 9-32 (191)
102 2ff7_A Alpha-hemolysin translo 95.9 0.022 7.7E-07 50.0 8.1 22 138-159 36-57 (247)
103 3kb2_A SPBC2 prophage-derived 95.9 0.0038 1.3E-07 50.8 2.8 23 138-160 2-24 (173)
104 1qhx_A CPT, protein (chloramph 95.8 0.004 1.4E-07 51.2 2.8 23 138-160 4-26 (178)
105 1g8p_A Magnesium-chelatase 38 95.8 0.023 8E-07 51.8 8.2 21 140-160 48-68 (350)
106 3nh6_A ATP-binding cassette SU 95.8 0.016 5.6E-07 52.6 7.0 23 137-159 80-102 (306)
107 3hr8_A Protein RECA; alpha and 95.8 0.011 3.9E-07 54.8 6.1 72 137-210 61-150 (356)
108 1odf_A YGR205W, hypothetical 3 95.8 0.0086 2.9E-07 54.0 5.1 26 134-159 28-53 (290)
109 1ly1_A Polynucleotide kinase; 95.8 0.0049 1.7E-07 50.6 3.1 22 138-159 3-24 (181)
110 2eyu_A Twitching motility prot 95.8 0.012 4.1E-07 52.2 5.7 101 136-244 24-137 (261)
111 3io5_A Recombination and repai 95.8 0.024 8E-07 51.8 7.7 73 139-211 30-123 (333)
112 3vaa_A Shikimate kinase, SK; s 95.7 0.0048 1.6E-07 52.1 2.7 24 137-160 25-48 (199)
113 1kag_A SKI, shikimate kinase I 95.6 0.0045 1.5E-07 50.6 2.3 23 138-160 5-27 (173)
114 3uie_A Adenylyl-sulfate kinase 95.6 0.0071 2.4E-07 51.0 3.5 26 135-160 23-48 (200)
115 1nks_A Adenylate kinase; therm 95.6 0.0068 2.3E-07 50.2 3.2 23 138-160 2-24 (194)
116 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.037 1.3E-06 53.8 8.8 127 139-272 43-196 (500)
117 3tui_C Methionine import ATP-b 95.6 0.028 9.4E-07 52.4 7.5 22 138-159 55-76 (366)
118 1kgd_A CASK, peripheral plasma 95.6 0.006 2E-07 50.7 2.8 23 138-160 6-28 (180)
119 2zr9_A Protein RECA, recombina 95.5 0.017 5.7E-07 53.6 6.0 72 137-210 61-150 (349)
120 3trf_A Shikimate kinase, SK; a 95.5 0.0062 2.1E-07 50.4 2.8 24 137-160 5-28 (185)
121 1xp8_A RECA protein, recombina 95.5 0.024 8.1E-07 52.9 7.0 71 138-210 75-163 (366)
122 2pt7_A CAG-ALFA; ATPase, prote 95.5 0.034 1.2E-06 51.0 7.9 98 138-244 172-279 (330)
123 2ewv_A Twitching motility prot 95.5 0.021 7.3E-07 53.3 6.6 102 136-245 135-249 (372)
124 1knq_A Gluconate kinase; ALFA/ 95.5 0.0074 2.5E-07 49.5 3.1 24 136-159 7-30 (175)
125 1uf9_A TT1252 protein; P-loop, 95.5 0.0085 2.9E-07 50.2 3.5 25 135-159 6-30 (203)
126 2rhm_A Putative kinase; P-loop 95.5 0.0084 2.9E-07 49.8 3.5 24 137-160 5-28 (193)
127 2p5t_B PEZT; postsegregational 95.5 0.013 4.4E-07 51.5 4.8 26 135-160 30-55 (253)
128 1gvn_B Zeta; postsegregational 95.5 0.014 4.7E-07 52.6 5.0 26 135-160 31-56 (287)
129 3ice_A Transcription terminati 95.4 0.014 4.7E-07 54.8 5.0 34 125-159 163-196 (422)
130 3asz_A Uridine kinase; cytidin 95.4 0.0087 3E-07 50.7 3.4 24 136-159 5-28 (211)
131 1v5w_A DMC1, meiotic recombina 95.4 0.035 1.2E-06 51.2 7.7 45 136-180 121-169 (343)
132 2jaq_A Deoxyguanosine kinase; 95.4 0.0075 2.6E-07 50.5 2.9 22 139-160 2-23 (205)
133 3tr0_A Guanylate kinase, GMP k 95.4 0.0076 2.6E-07 50.6 2.9 23 138-160 8-30 (205)
134 4eun_A Thermoresistant glucoki 95.4 0.0073 2.5E-07 50.9 2.7 26 135-160 27-52 (200)
135 2if2_A Dephospho-COA kinase; a 95.4 0.0082 2.8E-07 50.6 3.0 22 138-159 2-23 (204)
136 2qt1_A Nicotinamide riboside k 95.4 0.01 3.4E-07 50.2 3.6 25 136-160 20-44 (207)
137 4gp7_A Metallophosphoesterase; 95.4 0.0081 2.8E-07 49.5 2.9 22 137-158 9-30 (171)
138 3t61_A Gluconokinase; PSI-biol 95.4 0.0064 2.2E-07 51.3 2.3 24 137-160 18-41 (202)
139 2bdt_A BH3686; alpha-beta prot 95.4 0.0087 3E-07 49.8 3.1 22 138-159 3-24 (189)
140 1kht_A Adenylate kinase; phosp 95.3 0.0083 2.8E-07 49.7 2.9 23 138-160 4-26 (192)
141 1u94_A RECA protein, recombina 95.3 0.021 7.2E-07 53.0 5.8 72 137-210 63-152 (356)
142 1jr3_D DNA polymerase III, del 95.3 0.12 4E-06 47.2 10.9 129 135-271 16-154 (343)
143 1cke_A CK, MSSA, protein (cyti 95.3 0.0086 2.9E-07 51.2 2.9 22 138-159 6-27 (227)
144 1ukz_A Uridylate kinase; trans 95.3 0.011 3.7E-07 49.8 3.5 26 135-160 13-38 (203)
145 2j41_A Guanylate kinase; GMP, 95.3 0.0089 3E-07 50.2 2.9 24 137-160 6-29 (207)
146 2yvu_A Probable adenylyl-sulfa 95.2 0.012 4E-07 48.9 3.5 25 136-160 12-36 (186)
147 2orw_A Thymidine kinase; TMTK, 95.2 0.026 8.8E-07 47.2 5.5 93 138-240 4-113 (184)
148 1tev_A UMP-CMP kinase; ploop, 95.2 0.011 3.6E-07 49.1 3.1 24 137-160 3-26 (196)
149 1zuh_A Shikimate kinase; alpha 95.2 0.0094 3.2E-07 48.6 2.7 25 136-160 6-30 (168)
150 2c95_A Adenylate kinase 1; tra 95.2 0.011 3.7E-07 49.3 3.1 24 137-160 9-32 (196)
151 1jjv_A Dephospho-COA kinase; P 95.2 0.011 3.6E-07 50.0 3.1 22 138-159 3-24 (206)
152 3iij_A Coilin-interacting nucl 95.2 0.0078 2.7E-07 49.7 2.2 24 137-160 11-34 (180)
153 2ze6_A Isopentenyl transferase 95.1 0.011 3.8E-07 52.0 3.1 23 138-160 2-24 (253)
154 1qf9_A UMP/CMP kinase, protein 95.1 0.013 4.3E-07 48.5 3.2 24 137-160 6-29 (194)
155 2qor_A Guanylate kinase; phosp 95.1 0.0085 2.9E-07 50.7 2.2 25 136-160 11-35 (204)
156 1y63_A LMAJ004144AAA protein; 95.0 0.012 4.1E-07 48.9 3.1 25 136-160 9-33 (184)
157 3cm0_A Adenylate kinase; ATP-b 95.0 0.012 4.2E-07 48.6 3.1 22 138-159 5-26 (186)
158 2bwj_A Adenylate kinase 5; pho 95.0 0.011 3.9E-07 49.2 2.9 24 137-160 12-35 (199)
159 3a00_A Guanylate kinase, GMP k 95.0 0.0088 3E-07 49.9 2.2 22 138-159 2-23 (186)
160 2i1q_A DNA repair and recombin 95.0 0.032 1.1E-06 50.7 6.1 44 137-180 98-155 (322)
161 3a4m_A L-seryl-tRNA(SEC) kinas 95.0 0.013 4.3E-07 51.8 3.2 24 137-160 4-27 (260)
162 2iyv_A Shikimate kinase, SK; t 95.0 0.0083 2.8E-07 49.6 1.9 22 139-160 4-25 (184)
163 2plr_A DTMP kinase, probable t 95.0 0.013 4.4E-07 49.4 3.1 23 138-160 5-27 (213)
164 2z43_A DNA repair and recombin 95.0 0.039 1.3E-06 50.4 6.5 44 137-180 107-154 (324)
165 3tau_A Guanylate kinase, GMP k 95.0 0.013 4.4E-07 49.9 3.0 25 136-160 7-31 (208)
166 1gtv_A TMK, thymidylate kinase 95.0 0.0089 3E-07 50.6 2.0 22 139-160 2-23 (214)
167 1via_A Shikimate kinase; struc 95.0 0.011 3.9E-07 48.4 2.6 22 139-160 6-27 (175)
168 1z47_A CYSA, putative ABC-tran 94.9 0.057 2E-06 50.0 7.5 22 138-159 42-63 (355)
169 2pbr_A DTMP kinase, thymidylat 94.9 0.013 4.5E-07 48.5 2.9 22 139-160 2-23 (195)
170 1e6c_A Shikimate kinase; phosp 94.9 0.01 3.5E-07 48.4 2.1 23 138-160 3-25 (173)
171 2bbw_A Adenylate kinase 4, AK4 94.9 0.013 4.4E-07 51.2 2.9 23 137-159 27-49 (246)
172 2pt5_A Shikimate kinase, SK; a 94.8 0.014 4.7E-07 47.4 2.8 22 139-160 2-23 (168)
173 1xjc_A MOBB protein homolog; s 94.8 0.014 4.7E-07 48.3 2.8 25 136-160 3-27 (169)
174 2vli_A Antibiotic resistance p 94.8 0.011 3.8E-07 48.6 2.2 24 137-160 5-28 (183)
175 1lvg_A Guanylate kinase, GMP k 94.8 0.011 3.7E-07 50.0 2.2 22 138-159 5-26 (198)
176 2hf9_A Probable hydrogenase ni 94.8 0.022 7.6E-07 48.5 4.2 26 135-160 36-61 (226)
177 1uj2_A Uridine-cytidine kinase 94.8 0.016 5.5E-07 50.7 3.2 26 135-160 20-45 (252)
178 3tqc_A Pantothenate kinase; bi 94.8 0.031 1.1E-06 51.1 5.2 25 135-159 90-114 (321)
179 3aez_A Pantothenate kinase; tr 94.7 0.017 5.7E-07 52.7 3.4 25 135-159 88-112 (312)
180 2cdn_A Adenylate kinase; phosp 94.7 0.017 5.9E-07 48.5 3.2 24 137-160 20-43 (201)
181 1ex7_A Guanylate kinase; subst 94.7 0.015 5E-07 49.0 2.7 23 138-160 2-24 (186)
182 1znw_A Guanylate kinase, GMP k 94.7 0.015 5.3E-07 49.2 2.9 23 137-159 20-42 (207)
183 2yyz_A Sugar ABC transporter, 94.7 0.066 2.3E-06 49.7 7.4 22 138-159 30-51 (359)
184 1nn5_A Similar to deoxythymidy 94.7 0.018 6.1E-07 48.7 3.2 24 137-160 9-32 (215)
185 3lxx_A GTPase IMAP family memb 94.7 0.055 1.9E-06 46.7 6.4 27 135-161 27-53 (239)
186 2grj_A Dephospho-COA kinase; T 94.7 0.018 6E-07 48.6 3.1 26 135-160 10-35 (192)
187 2jeo_A Uridine-cytidine kinase 94.7 0.019 6.4E-07 50.1 3.4 24 136-159 24-47 (245)
188 2wwf_A Thymidilate kinase, put 94.6 0.017 5.9E-07 48.7 3.0 24 137-160 10-33 (212)
189 4e22_A Cytidylate kinase; P-lo 94.6 0.016 5.4E-07 50.9 2.9 24 136-159 26-49 (252)
190 2z0h_A DTMP kinase, thymidylat 94.6 0.017 5.8E-07 48.0 2.9 22 139-160 2-23 (197)
191 2f6r_A COA synthase, bifunctio 94.6 0.021 7E-07 51.1 3.5 24 135-158 73-96 (281)
192 2f1r_A Molybdopterin-guanine d 94.6 0.014 4.7E-07 48.4 2.2 22 138-159 3-24 (171)
193 3rlf_A Maltose/maltodextrin im 94.5 0.052 1.8E-06 50.8 6.1 22 138-159 30-51 (381)
194 3b5x_A Lipid A export ATP-bind 94.5 0.12 4.2E-06 51.0 9.2 23 137-159 369-391 (582)
195 3fwy_A Light-independent proto 94.5 0.019 6.6E-07 52.3 3.1 23 135-157 46-68 (314)
196 1aky_A Adenylate kinase; ATP:A 94.5 0.019 6.4E-07 49.0 2.9 24 137-160 4-27 (220)
197 3qf4_B Uncharacterized ABC tra 94.5 0.1 3.5E-06 51.7 8.6 23 137-159 381-403 (598)
198 2pez_A Bifunctional 3'-phospho 94.5 0.021 7.2E-07 47.0 3.1 23 137-159 5-27 (179)
199 3l0o_A Transcription terminati 94.5 0.036 1.2E-06 52.0 4.9 35 125-160 164-198 (427)
200 2wsm_A Hydrogenase expression/ 94.5 0.025 8.6E-07 48.0 3.7 26 135-160 28-53 (221)
201 3qf4_A ABC transporter, ATP-bi 94.4 0.077 2.6E-06 52.6 7.6 23 137-159 369-391 (587)
202 1zd8_A GTP:AMP phosphotransfer 94.4 0.021 7E-07 49.1 3.0 24 137-160 7-30 (227)
203 1z6g_A Guanylate kinase; struc 94.4 0.015 5.3E-07 49.8 2.2 23 137-159 23-45 (218)
204 2v54_A DTMP kinase, thymidylat 94.4 0.02 7E-07 47.9 2.9 23 138-160 5-27 (204)
205 3umf_A Adenylate kinase; rossm 94.4 0.023 8E-07 48.9 3.2 26 135-160 27-52 (217)
206 1rj9_A FTSY, signal recognitio 94.4 0.021 7.2E-07 51.8 3.1 24 136-159 101-124 (304)
207 1m7g_A Adenylylsulfate kinase; 94.4 0.023 7.7E-07 48.3 3.1 26 135-160 23-48 (211)
208 1htw_A HI0065; nucleotide-bind 94.3 0.024 8.2E-07 46.2 3.1 26 135-160 31-56 (158)
209 4a74_A DNA repair and recombin 94.3 0.024 8.2E-07 48.3 3.2 23 137-159 25-47 (231)
210 2ga8_A Hypothetical 39.9 kDa p 94.3 0.042 1.4E-06 50.9 5.0 26 134-159 21-46 (359)
211 3fb4_A Adenylate kinase; psych 94.3 0.022 7.6E-07 48.3 2.9 22 139-160 2-23 (216)
212 1vht_A Dephospho-COA kinase; s 94.3 0.024 8.3E-07 48.2 3.1 23 137-159 4-26 (218)
213 3lda_A DNA repair protein RAD5 94.2 0.082 2.8E-06 49.8 6.9 43 138-180 179-225 (400)
214 3k1j_A LON protease, ATP-depen 94.2 0.093 3.2E-06 52.1 7.6 23 138-160 61-83 (604)
215 3ney_A 55 kDa erythrocyte memb 94.2 0.023 7.8E-07 48.2 2.8 25 136-160 18-42 (197)
216 3e70_C DPA, signal recognition 94.2 0.037 1.3E-06 50.7 4.4 26 135-160 127-152 (328)
217 3p32_A Probable GTPase RV1496/ 94.2 0.041 1.4E-06 50.9 4.7 35 125-159 67-101 (355)
218 1zak_A Adenylate kinase; ATP:A 94.2 0.022 7.4E-07 48.7 2.6 24 137-160 5-28 (222)
219 3tlx_A Adenylate kinase 2; str 94.2 0.038 1.3E-06 48.2 4.2 26 135-160 27-52 (243)
220 2ehv_A Hypothetical protein PH 94.1 0.024 8.2E-07 48.9 2.9 22 137-158 30-51 (251)
221 1sq5_A Pantothenate kinase; P- 94.1 0.031 1.1E-06 50.7 3.7 25 135-159 78-102 (308)
222 2pcj_A ABC transporter, lipopr 94.1 0.025 8.5E-07 48.9 2.9 22 138-159 31-52 (224)
223 1g5t_A COB(I)alamin adenosyltr 94.1 0.11 3.8E-06 43.9 6.8 50 191-241 111-164 (196)
224 3dl0_A Adenylate kinase; phosp 94.1 0.025 8.6E-07 48.0 2.9 22 139-160 2-23 (216)
225 3tif_A Uncharacterized ABC tra 94.1 0.025 8.4E-07 49.3 2.8 22 138-159 32-53 (235)
226 3ake_A Cytidylate kinase; CMP 94.0 0.027 9.1E-07 47.3 2.9 21 139-159 4-24 (208)
227 2onk_A Molybdate/tungstate ABC 94.0 0.027 9.1E-07 49.3 2.9 22 138-159 25-46 (240)
228 1s96_A Guanylate kinase, GMP k 94.0 0.026 8.8E-07 48.7 2.7 24 137-160 16-39 (219)
229 2i3b_A HCR-ntpase, human cance 94.0 0.022 7.6E-07 47.9 2.3 22 139-160 3-24 (189)
230 3lnc_A Guanylate kinase, GMP k 94.0 0.018 6.1E-07 49.7 1.7 21 138-158 28-48 (231)
231 3nwj_A ATSK2; P loop, shikimat 94.0 0.021 7.2E-07 50.3 2.2 22 138-159 49-70 (250)
232 3thx_A DNA mismatch repair pro 94.0 0.16 5.3E-06 53.1 9.0 107 136-247 661-792 (934)
233 2yhs_A FTSY, cell division pro 94.0 0.054 1.8E-06 52.4 5.1 24 136-159 292-315 (503)
234 3b85_A Phosphate starvation-in 93.9 0.026 8.8E-07 48.3 2.5 22 138-159 23-44 (208)
235 3b9q_A Chloroplast SRP recepto 93.9 0.032 1.1E-06 50.5 3.3 24 136-159 99-122 (302)
236 1ypw_A Transitional endoplasmi 93.9 0.005 1.7E-07 63.5 -2.4 128 138-272 512-661 (806)
237 3gfo_A Cobalt import ATP-bindi 93.9 0.042 1.5E-06 49.0 4.0 22 138-159 35-56 (275)
238 1np6_A Molybdopterin-guanine d 93.8 0.031 1.1E-06 46.4 2.8 24 137-160 6-29 (174)
239 4g1u_C Hemin import ATP-bindin 93.8 0.051 1.8E-06 48.2 4.4 22 138-159 38-59 (266)
240 1b0u_A Histidine permease; ABC 93.8 0.03 1E-06 49.6 2.8 22 138-159 33-54 (262)
241 2qtf_A Protein HFLX, GTP-bindi 93.8 0.084 2.9E-06 49.1 6.0 58 82-161 146-203 (364)
242 3be4_A Adenylate kinase; malar 93.7 0.034 1.2E-06 47.4 3.0 23 138-160 6-28 (217)
243 2px0_A Flagellar biosynthesis 93.7 0.035 1.2E-06 50.1 3.2 24 136-159 104-127 (296)
244 1e4v_A Adenylate kinase; trans 93.7 0.035 1.2E-06 47.2 3.0 22 139-160 2-23 (214)
245 1ji0_A ABC transporter; ATP bi 93.7 0.032 1.1E-06 48.7 2.8 22 138-159 33-54 (240)
246 3b60_A Lipid A export ATP-bind 93.7 0.11 3.7E-06 51.4 6.9 22 138-159 370-391 (582)
247 1zu4_A FTSY; GTPase, signal re 93.6 0.07 2.4E-06 48.7 5.1 25 135-159 103-127 (320)
248 1g6h_A High-affinity branched- 93.6 0.033 1.1E-06 49.1 2.8 22 138-159 34-55 (257)
249 2xb4_A Adenylate kinase; ATP-b 93.6 0.035 1.2E-06 47.7 2.9 22 139-160 2-23 (223)
250 2xxa_A Signal recognition part 93.6 0.06 2.1E-06 51.3 4.8 25 135-159 98-122 (433)
251 1mv5_A LMRA, multidrug resista 93.6 0.037 1.3E-06 48.4 3.0 23 137-159 28-50 (243)
252 2d2e_A SUFC protein; ABC-ATPas 93.6 0.035 1.2E-06 48.8 2.9 22 138-159 30-51 (250)
253 1ltq_A Polynucleotide kinase; 93.5 0.038 1.3E-06 49.4 3.1 22 138-159 3-24 (301)
254 2olj_A Amino acid ABC transpor 93.5 0.035 1.2E-06 49.2 2.8 22 138-159 51-72 (263)
255 2dyk_A GTP-binding protein; GT 93.5 0.047 1.6E-06 43.3 3.3 24 138-161 2-25 (161)
256 3d3q_A TRNA delta(2)-isopenten 93.5 0.039 1.3E-06 50.8 3.1 23 138-160 8-30 (340)
257 1oix_A RAS-related protein RAB 93.4 0.042 1.4E-06 45.7 3.0 24 137-160 29-52 (191)
258 2wji_A Ferrous iron transport 93.4 0.055 1.9E-06 43.6 3.7 23 138-160 4-26 (165)
259 2zu0_C Probable ATP-dependent 93.4 0.038 1.3E-06 49.1 2.9 22 138-159 47-68 (267)
260 1sgw_A Putative ABC transporte 93.4 0.031 1.1E-06 48.0 2.2 22 138-159 36-57 (214)
261 3r20_A Cytidylate kinase; stru 93.4 0.04 1.4E-06 48.0 2.9 23 137-159 9-31 (233)
262 2ixe_A Antigen peptide transpo 93.4 0.038 1.3E-06 49.2 2.8 22 138-159 46-67 (271)
263 2og2_A Putative signal recogni 93.4 0.044 1.5E-06 50.9 3.3 25 136-160 156-180 (359)
264 1vma_A Cell division protein F 93.4 0.047 1.6E-06 49.5 3.4 24 136-159 103-126 (306)
265 3zvl_A Bifunctional polynucleo 93.4 0.042 1.4E-06 52.0 3.2 26 135-160 256-281 (416)
266 1yrb_A ATP(GTP)binding protein 93.3 0.05 1.7E-06 47.5 3.5 24 136-159 13-36 (262)
267 2ghi_A Transport protein; mult 93.3 0.039 1.3E-06 48.8 2.8 22 138-159 47-68 (260)
268 4f4c_A Multidrug resistance pr 93.3 0.22 7.6E-06 54.0 9.2 22 138-159 445-466 (1321)
269 4a82_A Cystic fibrosis transme 93.3 0.075 2.6E-06 52.5 5.1 23 137-159 367-389 (578)
270 2aka_B Dynamin-1; fusion prote 93.3 1.3 4.6E-05 38.9 13.1 27 135-161 24-50 (299)
271 1ak2_A Adenylate kinase isoenz 93.3 0.042 1.4E-06 47.4 2.9 24 137-160 16-39 (233)
272 1a7j_A Phosphoribulokinase; tr 93.3 0.027 9.4E-07 50.6 1.8 24 136-159 4-27 (290)
273 2ce2_X GTPase HRAS; signaling 93.3 0.056 1.9E-06 42.8 3.5 23 139-161 5-27 (166)
274 2yz2_A Putative ABC transporte 93.3 0.04 1.4E-06 48.9 2.8 22 138-159 34-55 (266)
275 1sky_E F1-ATPase, F1-ATP synth 93.3 0.092 3.1E-06 50.4 5.4 39 139-178 153-191 (473)
276 2lkc_A Translation initiation 93.3 0.07 2.4E-06 43.1 4.1 26 135-160 6-31 (178)
277 2qi9_C Vitamin B12 import ATP- 93.2 0.042 1.4E-06 48.3 2.8 22 138-159 27-48 (249)
278 1fzq_A ADP-ribosylation factor 93.2 0.065 2.2E-06 43.9 3.8 26 135-160 14-39 (181)
279 2vp4_A Deoxynucleoside kinase; 93.2 0.043 1.5E-06 47.3 2.8 25 136-160 19-43 (230)
280 2ihy_A ABC transporter, ATP-bi 93.2 0.042 1.5E-06 49.1 2.8 22 138-159 48-69 (279)
281 2nq2_C Hypothetical ABC transp 93.2 0.044 1.5E-06 48.3 2.9 22 138-159 32-53 (253)
282 2zej_A Dardarin, leucine-rich 93.2 0.041 1.4E-06 45.3 2.5 22 139-160 4-25 (184)
283 3thx_B DNA mismatch repair pro 93.1 0.2 6.9E-06 52.1 8.1 106 136-246 672-802 (918)
284 2w0m_A SSO2452; RECA, SSPF, un 93.1 0.047 1.6E-06 46.3 2.9 22 138-159 24-45 (235)
285 3upu_A ATP-dependent DNA helic 93.1 0.42 1.4E-05 45.6 9.8 22 139-160 47-68 (459)
286 3dm5_A SRP54, signal recogniti 93.0 0.083 2.8E-06 50.4 4.7 24 136-159 99-122 (443)
287 2f9l_A RAB11B, member RAS onco 93.0 0.046 1.6E-06 45.6 2.6 24 137-160 5-28 (199)
288 2ged_A SR-beta, signal recogni 93.0 0.078 2.7E-06 43.6 4.0 26 136-161 47-72 (193)
289 1q3t_A Cytidylate kinase; nucl 93.0 0.054 1.8E-06 46.8 3.1 24 136-159 15-38 (236)
290 1z08_A RAS-related protein RAB 92.9 0.069 2.4E-06 42.7 3.5 25 137-161 6-30 (170)
291 3crm_A TRNA delta(2)-isopenten 92.9 0.054 1.8E-06 49.5 3.1 23 138-160 6-28 (323)
292 2ck3_D ATP synthase subunit be 92.9 0.2 6.9E-06 48.1 7.1 52 125-178 142-193 (482)
293 3kl4_A SRP54, signal recogniti 92.9 0.082 2.8E-06 50.3 4.4 24 136-159 96-119 (433)
294 3sr0_A Adenylate kinase; phosp 92.9 0.051 1.8E-06 46.3 2.7 22 139-160 2-23 (206)
295 1z2a_A RAS-related protein RAB 92.8 0.055 1.9E-06 43.2 2.8 23 138-160 6-28 (168)
296 2ocp_A DGK, deoxyguanosine kin 92.8 0.064 2.2E-06 46.4 3.4 24 137-160 2-25 (241)
297 1nij_A Hypothetical protein YJ 92.8 0.057 2E-06 49.1 3.2 25 136-160 3-27 (318)
298 3a8t_A Adenylate isopentenyltr 92.8 0.059 2E-06 49.5 3.2 24 137-160 40-63 (339)
299 2v9p_A Replication protein E1; 92.7 0.056 1.9E-06 49.0 2.9 25 135-159 124-148 (305)
300 1u8z_A RAS-related protein RAL 92.7 0.072 2.5E-06 42.3 3.4 24 138-161 5-28 (168)
301 3con_A GTPase NRAS; structural 92.7 0.07 2.4E-06 43.8 3.4 24 138-161 22-45 (190)
302 1fx0_B ATP synthase beta chain 92.7 0.25 8.5E-06 47.6 7.5 41 138-179 166-206 (498)
303 3sop_A Neuronal-specific septi 92.7 0.061 2.1E-06 47.8 3.1 21 139-159 4-24 (270)
304 2wjg_A FEOB, ferrous iron tran 92.7 0.07 2.4E-06 43.6 3.3 24 137-160 7-30 (188)
305 2r9v_A ATP synthase subunit al 92.7 0.17 5.8E-06 48.9 6.3 39 138-180 176-216 (515)
306 1c1y_A RAS-related protein RAP 92.6 0.074 2.5E-06 42.3 3.3 22 139-160 5-26 (167)
307 2pjz_A Hypothetical protein ST 92.6 0.058 2E-06 47.8 2.8 22 138-159 31-52 (263)
308 4eaq_A DTMP kinase, thymidylat 92.6 0.065 2.2E-06 46.3 3.1 26 136-161 25-50 (229)
309 2nzj_A GTP-binding protein REM 92.6 0.058 2E-06 43.4 2.7 24 137-160 4-27 (175)
310 3end_A Light-independent proto 92.6 0.065 2.2E-06 48.1 3.2 26 134-159 38-63 (307)
311 1nlf_A Regulatory protein REPA 92.6 0.063 2.1E-06 47.6 3.0 22 138-159 31-52 (279)
312 3hws_A ATP-dependent CLP prote 92.5 0.092 3.2E-06 48.4 4.2 24 137-160 51-74 (363)
313 1cr0_A DNA primase/helicase; R 92.5 0.063 2.2E-06 48.0 3.0 24 137-160 35-58 (296)
314 1svi_A GTP-binding protein YSX 92.5 0.082 2.8E-06 43.5 3.4 26 135-160 21-46 (195)
315 3pqc_A Probable GTP-binding pr 92.5 0.086 2.9E-06 43.2 3.6 26 136-161 22-47 (195)
316 3vr4_D V-type sodium ATPase su 92.5 0.07 2.4E-06 51.0 3.3 25 139-163 153-177 (465)
317 2erx_A GTP-binding protein DI- 92.4 0.087 3E-06 42.0 3.5 22 139-160 5-26 (172)
318 1ls1_A Signal recognition part 92.4 0.071 2.4E-06 48.0 3.2 24 136-159 97-120 (295)
319 2bbs_A Cystic fibrosis transme 92.4 0.066 2.3E-06 48.2 2.9 22 138-159 65-86 (290)
320 3q72_A GTP-binding protein RAD 92.4 0.063 2.2E-06 42.8 2.6 22 139-160 4-25 (166)
321 2qe7_A ATP synthase subunit al 92.4 0.17 5.9E-06 48.8 5.9 50 125-179 151-202 (502)
322 3kta_A Chromosome segregation 92.4 0.074 2.5E-06 43.6 3.0 21 139-159 28-48 (182)
323 1ek0_A Protein (GTP-binding pr 92.3 0.07 2.4E-06 42.5 2.8 23 139-161 5-27 (170)
324 1z0j_A RAB-22, RAS-related pro 92.3 0.07 2.4E-06 42.6 2.8 24 138-161 7-30 (170)
325 1kao_A RAP2A; GTP-binding prot 92.3 0.088 3E-06 41.7 3.4 23 139-161 5-27 (167)
326 2fn4_A P23, RAS-related protei 92.3 0.12 4.1E-06 41.6 4.2 25 136-160 8-32 (181)
327 1m7b_A RND3/RHOE small GTP-bin 92.3 0.091 3.1E-06 43.0 3.4 25 137-161 7-31 (184)
328 3tw8_B RAS-related protein RAB 92.2 0.08 2.7E-06 42.7 3.1 27 135-161 7-33 (181)
329 2j37_W Signal recognition part 92.2 0.12 4E-06 50.2 4.7 24 135-158 99-122 (504)
330 2gj8_A MNME, tRNA modification 92.2 0.074 2.5E-06 43.3 2.8 23 138-160 5-27 (172)
331 3exa_A TRNA delta(2)-isopenten 92.2 0.076 2.6E-06 48.3 3.1 24 137-160 3-26 (322)
332 3t1o_A Gliding protein MGLA; G 92.2 0.069 2.4E-06 43.8 2.6 23 137-159 14-36 (198)
333 3kkq_A RAS-related protein M-R 92.2 0.091 3.1E-06 42.7 3.4 26 136-161 17-42 (183)
334 3t5g_A GTP-binding protein RHE 92.2 0.097 3.3E-06 42.5 3.5 25 137-161 6-30 (181)
335 1j8m_F SRP54, signal recogniti 92.2 0.12 4.2E-06 46.5 4.4 23 137-159 98-120 (297)
336 3t34_A Dynamin-related protein 92.1 0.74 2.5E-05 42.3 9.9 26 135-160 32-57 (360)
337 1nrj_B SR-beta, signal recogni 92.1 0.085 2.9E-06 44.4 3.2 27 135-161 10-36 (218)
338 3fvq_A Fe(3+) IONS import ATP- 92.1 0.076 2.6E-06 49.3 3.0 22 138-159 31-52 (359)
339 4dsu_A GTPase KRAS, isoform 2B 92.1 0.095 3.2E-06 42.7 3.3 24 138-161 5-28 (189)
340 1g16_A RAS-related protein SEC 92.1 0.082 2.8E-06 42.2 2.9 24 138-161 4-27 (170)
341 4f4c_A Multidrug resistance pr 92.0 0.33 1.1E-05 52.7 8.3 22 138-159 1106-1127(1321)
342 1p5z_B DCK, deoxycytidine kina 92.0 0.057 1.9E-06 47.5 2.0 26 135-160 22-47 (263)
343 1lw7_A Transcriptional regulat 92.0 0.082 2.8E-06 48.9 3.2 23 137-159 170-192 (365)
344 2cxx_A Probable GTP-binding pr 92.0 0.084 2.9E-06 43.1 2.9 23 139-161 3-25 (190)
345 1ky3_A GTP-binding protein YPT 92.0 0.099 3.4E-06 42.2 3.3 26 136-161 7-32 (182)
346 1svm_A Large T antigen; AAA+ f 92.0 0.13 4.4E-06 48.1 4.5 25 135-159 167-191 (377)
347 2v3c_C SRP54, signal recogniti 91.9 0.061 2.1E-06 51.2 2.3 24 136-159 98-121 (432)
348 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.082 2.8E-06 42.6 2.8 24 137-160 7-30 (177)
349 2hxs_A RAB-26, RAS-related pro 91.9 0.087 3E-06 42.5 2.9 23 138-160 7-29 (178)
350 1r8s_A ADP-ribosylation factor 91.9 0.078 2.7E-06 42.2 2.6 21 140-160 3-23 (164)
351 1r2q_A RAS-related protein RAB 91.9 0.083 2.9E-06 42.1 2.8 23 138-160 7-29 (170)
352 2y8e_A RAB-protein 6, GH09086P 91.9 0.12 4E-06 41.6 3.7 23 138-160 15-37 (179)
353 1z0f_A RAB14, member RAS oncog 91.9 0.1 3.5E-06 42.0 3.3 26 136-161 14-39 (179)
354 1zj6_A ADP-ribosylation factor 91.9 0.2 6.7E-06 41.0 5.1 33 125-160 7-39 (187)
355 2bme_A RAB4A, RAS-related prot 91.9 0.11 3.9E-06 42.2 3.6 25 137-161 10-34 (186)
356 1f6b_A SAR1; gtpases, N-termin 91.9 0.077 2.6E-06 44.3 2.6 24 137-160 25-48 (198)
357 3ihw_A Centg3; RAS, centaurin, 91.8 0.11 3.6E-06 42.9 3.3 24 137-160 20-43 (184)
358 2iwr_A Centaurin gamma 1; ANK 91.8 0.078 2.7E-06 42.9 2.5 23 138-160 8-30 (178)
359 3c5c_A RAS-like protein 12; GD 91.8 0.11 3.7E-06 42.8 3.4 25 137-161 21-45 (187)
360 3foz_A TRNA delta(2)-isopenten 91.8 0.11 3.7E-06 47.3 3.5 25 136-160 9-33 (316)
361 3bc1_A RAS-related protein RAB 91.8 0.11 3.9E-06 42.2 3.5 25 137-161 11-35 (195)
362 3cf2_A TER ATPase, transitiona 91.8 0.08 2.7E-06 54.3 3.0 126 138-272 512-661 (806)
363 1cp2_A CP2, nitrogenase iron p 91.8 0.097 3.3E-06 45.8 3.2 22 138-159 2-23 (269)
364 3q85_A GTP-binding protein REM 91.7 0.1 3.6E-06 41.6 3.2 22 138-159 3-24 (169)
365 1mh1_A RAC1; GTP-binding, GTPa 91.7 0.11 3.7E-06 42.2 3.3 23 138-160 6-28 (186)
366 3tkl_A RAS-related protein RAB 91.7 0.12 4E-06 42.5 3.5 26 136-161 15-40 (196)
367 1upt_A ARL1, ADP-ribosylation 91.7 0.091 3.1E-06 42.0 2.8 25 137-161 7-31 (171)
368 1m2o_B GTP-binding protein SAR 91.7 0.094 3.2E-06 43.4 2.9 23 138-160 24-46 (190)
369 2a9k_A RAS-related protein RAL 91.7 0.11 3.8E-06 42.1 3.3 25 137-161 18-42 (187)
370 1fx0_A ATP synthase alpha chai 91.7 0.19 6.5E-06 48.5 5.3 66 139-210 165-266 (507)
371 1moz_A ARL1, ADP-ribosylation 91.7 0.12 3.9E-06 42.0 3.4 26 135-160 16-41 (183)
372 3g5u_A MCG1178, multidrug resi 91.7 0.23 7.7E-06 53.8 6.5 22 138-159 1060-1081(1284)
373 2p67_A LAO/AO transport system 91.6 0.17 5.7E-06 46.5 4.8 26 134-159 53-78 (341)
374 2dr3_A UPF0273 protein PH0284; 91.6 0.093 3.2E-06 45.0 2.9 22 138-159 24-45 (247)
375 2ck3_A ATP synthase subunit al 91.6 0.19 6.5E-06 48.6 5.2 55 125-180 151-211 (510)
376 2afh_E Nitrogenase iron protei 91.6 0.11 3.7E-06 46.3 3.4 23 137-159 2-24 (289)
377 2efe_B Small GTP-binding prote 91.6 0.12 4.2E-06 41.7 3.5 25 137-161 12-36 (181)
378 3d31_A Sulfate/molybdate ABC t 91.6 0.085 2.9E-06 48.8 2.7 22 138-159 27-48 (348)
379 1h65_A Chloroplast outer envel 91.6 0.21 7.2E-06 43.9 5.2 28 134-161 36-63 (270)
380 1pui_A ENGB, probable GTP-bind 91.5 0.068 2.3E-06 44.7 1.8 25 136-160 25-49 (210)
381 2qm8_A GTPase/ATPase; G protei 91.5 0.17 5.9E-06 46.4 4.7 26 134-159 52-77 (337)
382 3bwd_D RAC-like GTP-binding pr 91.5 0.098 3.4E-06 42.3 2.8 23 138-160 9-31 (182)
383 3dzd_A Transcriptional regulat 91.5 3 0.0001 38.4 13.2 118 140-270 155-314 (368)
384 3cr8_A Sulfate adenylyltranfer 91.5 0.096 3.3E-06 51.5 3.1 24 137-160 369-392 (552)
385 2oil_A CATX-8, RAS-related pro 91.4 0.097 3.3E-06 43.1 2.7 25 137-161 25-49 (193)
386 3mfy_A V-type ATP synthase alp 91.4 0.37 1.3E-05 47.0 7.1 35 125-160 216-250 (588)
387 2it1_A 362AA long hypothetical 91.4 0.095 3.2E-06 48.7 2.9 22 138-159 30-51 (362)
388 2h92_A Cytidylate kinase; ross 91.4 0.083 2.8E-06 44.8 2.3 22 138-159 4-25 (219)
389 2g6b_A RAS-related protein RAB 91.4 0.14 4.7E-06 41.4 3.6 25 137-161 10-34 (180)
390 3llu_A RAS-related GTP-binding 91.4 0.099 3.4E-06 43.4 2.8 23 137-159 20-42 (196)
391 2www_A Methylmalonic aciduria 91.4 0.11 3.9E-06 47.8 3.4 24 136-159 73-96 (349)
392 2qu8_A Putative nucleolar GTP- 91.4 0.13 4.5E-06 43.8 3.6 26 135-160 27-52 (228)
393 3g5u_A MCG1178, multidrug resi 91.4 0.4 1.4E-05 51.9 8.1 22 138-159 417-438 (1284)
394 4bas_A ADP-ribosylation factor 91.4 0.11 3.9E-06 42.7 3.1 27 135-161 15-41 (199)
395 2atv_A RERG, RAS-like estrogen 91.3 0.13 4.3E-06 42.6 3.4 25 137-161 28-52 (196)
396 2fg5_A RAB-22B, RAS-related pr 91.3 0.11 3.7E-06 42.9 2.9 25 137-161 23-47 (192)
397 1g29_1 MALK, maltose transport 91.3 0.098 3.3E-06 48.8 2.9 22 138-159 30-51 (372)
398 1vg8_A RAS-related protein RAB 91.3 0.1 3.5E-06 43.3 2.8 26 136-161 7-32 (207)
399 3oes_A GTPase rhebl1; small GT 91.3 0.13 4.6E-06 42.7 3.5 26 136-161 23-48 (201)
400 1oxx_K GLCV, glucose, ABC tran 91.3 0.077 2.6E-06 49.1 2.1 22 138-159 32-53 (353)
401 2bov_A RAla, RAS-related prote 91.3 0.17 5.9E-06 41.8 4.2 26 136-161 13-38 (206)
402 2x2e_A Dynamin-1; nitration, h 91.3 2.1 7.1E-05 39.1 11.9 26 135-160 29-54 (353)
403 2axn_A 6-phosphofructo-2-kinas 91.3 0.11 3.9E-06 50.6 3.4 24 136-159 34-57 (520)
404 1v43_A Sugar-binding transport 91.2 0.1 3.5E-06 48.7 2.9 22 138-159 38-59 (372)
405 1zd9_A ADP-ribosylation factor 91.2 0.14 4.8E-06 42.0 3.5 25 137-161 22-46 (188)
406 3cbq_A GTP-binding protein REM 91.2 0.088 3E-06 43.8 2.2 24 136-159 22-45 (195)
407 1tq4_A IIGP1, interferon-induc 91.2 0.1 3.5E-06 49.4 2.8 24 136-159 68-91 (413)
408 2qnr_A Septin-2, protein NEDD5 91.1 0.1 3.5E-06 47.1 2.7 20 140-159 21-40 (301)
409 3clv_A RAB5 protein, putative; 91.1 0.15 5.1E-06 41.8 3.5 25 137-161 7-31 (208)
410 2fh5_B SR-beta, signal recogni 91.1 0.12 4.2E-06 43.2 3.1 25 137-161 7-31 (214)
411 2gf0_A GTP-binding protein DI- 91.1 0.16 5.4E-06 41.8 3.7 24 137-160 8-31 (199)
412 1gwn_A RHO-related GTP-binding 91.1 0.14 4.9E-06 43.0 3.4 26 136-161 27-52 (205)
413 1zbd_A Rabphilin-3A; G protein 91.1 0.11 3.9E-06 43.0 2.8 25 137-161 8-32 (203)
414 3reg_A RHO-like small GTPase; 91.0 0.15 5E-06 42.1 3.5 25 137-161 23-47 (194)
415 3oaa_A ATP synthase subunit al 91.0 0.31 1.1E-05 47.0 6.1 50 125-179 151-202 (513)
416 3dz8_A RAS-related protein RAB 91.0 0.11 3.8E-06 42.7 2.7 25 137-161 23-47 (191)
417 1ksh_A ARF-like protein 2; sma 91.0 0.11 3.9E-06 42.3 2.7 27 135-161 16-42 (186)
418 3def_A T7I23.11 protein; chlor 91.0 0.27 9.1E-06 43.1 5.2 27 135-161 34-60 (262)
419 3eph_A TRNA isopentenyltransfe 90.9 0.13 4.6E-06 48.3 3.3 22 138-159 3-24 (409)
420 2ew1_A RAS-related protein RAB 90.8 0.13 4.3E-06 43.2 2.9 25 136-160 25-49 (201)
421 2h17_A ADP-ribosylation factor 90.8 0.13 4.4E-06 41.9 2.9 24 137-160 21-44 (181)
422 2gf9_A RAS-related protein RAB 90.8 0.12 4.2E-06 42.3 2.8 25 137-161 22-46 (189)
423 4dhe_A Probable GTP-binding pr 90.8 0.12 4E-06 43.7 2.7 27 135-161 27-53 (223)
424 2o52_A RAS-related protein RAB 90.8 0.12 4.2E-06 43.0 2.7 25 136-160 24-48 (200)
425 3gd7_A Fusion complex of cysti 90.8 0.12 4.2E-06 48.4 3.0 22 138-159 48-69 (390)
426 2q3h_A RAS homolog gene family 90.8 0.12 4E-06 42.9 2.6 25 137-161 20-44 (201)
427 4gzl_A RAS-related C3 botulinu 90.7 0.15 5.2E-06 42.6 3.3 26 136-161 29-54 (204)
428 2gza_A Type IV secretion syste 90.7 0.11 3.7E-06 48.2 2.5 22 138-159 176-197 (361)
429 2a5j_A RAS-related protein RAB 90.7 0.12 4.3E-06 42.4 2.7 25 137-161 21-45 (191)
430 1z06_A RAS-related protein RAB 90.7 0.13 4.4E-06 42.2 2.8 25 136-160 19-43 (189)
431 1x3s_A RAS-related protein RAB 90.7 0.13 4.4E-06 42.2 2.8 24 138-161 16-39 (195)
432 4akg_A Glutathione S-transfera 90.7 0.38 1.3E-05 55.5 7.3 97 122-227 1597-1695(2695)
433 2bcg_Y Protein YP2, GTP-bindin 90.7 0.17 5.9E-06 42.0 3.6 25 137-161 8-32 (206)
434 3cph_A RAS-related protein SEC 90.6 0.17 5.9E-06 42.1 3.5 25 137-161 20-44 (213)
435 3gmt_A Adenylate kinase; ssgci 90.6 0.12 4.2E-06 44.7 2.6 23 138-160 9-31 (230)
436 2p5s_A RAS and EF-hand domain 90.6 0.13 4.4E-06 42.7 2.7 25 136-160 27-51 (199)
437 2cjw_A GTP-binding protein GEM 90.6 0.13 4.3E-06 42.7 2.6 23 137-159 6-28 (192)
438 2obl_A ESCN; ATPase, hydrolase 90.6 0.14 4.6E-06 47.3 3.0 34 126-160 61-94 (347)
439 2fv8_A H6, RHO-related GTP-bin 90.5 0.14 4.8E-06 42.8 2.9 25 137-161 25-49 (207)
440 2qmh_A HPR kinase/phosphorylas 90.5 0.16 5.4E-06 43.1 3.1 22 138-159 35-56 (205)
441 2il1_A RAB12; G-protein, GDP, 90.5 0.12 4E-06 42.7 2.4 25 137-161 26-50 (192)
442 2h57_A ADP-ribosylation factor 90.5 0.12 4.1E-06 42.4 2.4 25 137-161 21-45 (190)
443 3ch4_B Pmkase, phosphomevalona 90.5 0.19 6.6E-06 42.6 3.7 25 135-159 9-33 (202)
444 2j1l_A RHO-related GTP-binding 90.5 0.13 4.6E-06 43.3 2.7 24 137-160 34-57 (214)
445 2atx_A Small GTP binding prote 90.4 0.18 6E-06 41.5 3.4 24 137-160 18-41 (194)
446 1ega_A Protein (GTP-binding pr 90.4 0.15 5.2E-06 45.8 3.2 24 137-160 8-31 (301)
447 1u0j_A DNA replication protein 90.4 0.27 9.1E-06 43.6 4.7 35 126-160 93-127 (267)
448 2c61_A A-type ATP synthase non 90.4 0.14 4.8E-06 49.1 3.0 40 139-178 154-195 (469)
449 2j0v_A RAC-like GTP-binding pr 90.3 0.18 6.2E-06 42.1 3.4 25 137-161 9-33 (212)
450 3bh0_A DNAB-like replicative h 90.3 0.22 7.6E-06 45.1 4.2 38 137-176 68-105 (315)
451 1bif_A 6-phosphofructo-2-kinas 90.3 0.15 5.2E-06 48.9 3.2 25 136-160 38-62 (469)
452 2hup_A RAS-related protein RAB 90.2 0.15 5.3E-06 42.4 2.9 26 136-161 28-53 (201)
453 2gco_A H9, RHO-related GTP-bin 90.2 0.19 6.4E-06 41.8 3.4 25 137-161 25-49 (201)
454 2b6h_A ADP-ribosylation factor 90.2 0.2 6.7E-06 41.4 3.5 26 135-160 27-52 (192)
455 3k53_A Ferrous iron transport 90.2 0.18 6.2E-06 44.4 3.5 24 137-160 3-26 (271)
456 2ffh_A Protein (FFH); SRP54, s 90.2 0.16 5.5E-06 48.2 3.2 24 136-159 97-120 (425)
457 3gqb_B V-type ATP synthase bet 90.2 0.2 6.9E-06 47.8 3.9 25 139-163 149-173 (464)
458 2npi_A Protein CLP1; CLP1-PCF1 90.1 0.12 4.2E-06 49.5 2.4 23 137-159 138-160 (460)
459 3q3j_B RHO-related GTP-binding 90.1 0.19 6.6E-06 42.4 3.5 24 138-161 28-51 (214)
460 4edh_A DTMP kinase, thymidylat 90.0 0.18 6E-06 43.1 3.1 23 138-160 7-29 (213)
461 3ld9_A DTMP kinase, thymidylat 90.0 0.2 6.7E-06 43.2 3.4 26 135-160 19-44 (223)
462 3fdi_A Uncharacterized protein 89.9 0.18 6.1E-06 42.6 3.0 23 138-160 7-29 (201)
463 3iev_A GTP-binding protein ERA 89.9 0.19 6.5E-06 45.4 3.4 27 134-160 7-33 (308)
464 2fu5_C RAS-related protein RAB 89.9 0.098 3.3E-06 42.5 1.3 24 137-160 8-31 (183)
465 2x77_A ADP-ribosylation factor 89.9 0.14 4.7E-06 41.9 2.3 26 135-160 20-45 (189)
466 2xtp_A GTPase IMAP family memb 89.8 0.21 7.1E-06 43.5 3.5 26 136-161 21-46 (260)
467 3hjn_A DTMP kinase, thymidylat 89.8 0.36 1.2E-05 40.6 4.8 22 139-160 2-23 (197)
468 4hlc_A DTMP kinase, thymidylat 89.8 0.19 6.5E-06 42.6 3.1 23 138-160 3-25 (205)
469 2qag_B Septin-6, protein NEDD5 89.7 0.15 5.2E-06 48.3 2.7 23 138-160 43-65 (427)
470 3vkg_A Dynein heavy chain, cyt 89.7 0.39 1.3E-05 56.1 6.4 137 122-272 1634-1774(3245)
471 3v9p_A DTMP kinase, thymidylat 89.7 0.15 5.3E-06 44.0 2.5 24 137-160 25-48 (227)
472 3ozx_A RNAse L inhibitor; ATP 89.6 0.16 5.5E-06 49.7 2.8 22 138-159 295-316 (538)
473 1yqt_A RNAse L inhibitor; ATP- 89.6 0.16 5.6E-06 49.6 2.9 23 138-160 313-335 (538)
474 3vr4_A V-type sodium ATPase ca 89.6 0.35 1.2E-05 47.4 5.1 35 125-160 221-255 (600)
475 2f7s_A C25KG, RAS-related prot 89.5 0.17 5.9E-06 42.4 2.7 24 137-160 25-48 (217)
476 4dzz_A Plasmid partitioning pr 89.5 0.17 5.9E-06 42.0 2.6 22 138-159 2-24 (206)
477 3lv8_A DTMP kinase, thymidylat 89.3 0.2 7E-06 43.5 3.0 24 137-160 27-50 (236)
478 2g3y_A GTP-binding protein GEM 89.3 0.18 6.2E-06 42.8 2.6 24 136-159 36-59 (211)
479 2dpy_A FLII, flagellum-specifi 89.2 0.19 6.6E-06 47.8 3.0 34 126-160 147-180 (438)
480 3b1v_A Ferrous iron uptake tra 89.2 0.29 9.9E-06 43.4 4.0 24 137-160 3-26 (272)
481 4dkx_A RAS-related protein RAB 89.2 0.21 7.2E-06 42.6 3.0 22 139-160 15-36 (216)
482 1m8p_A Sulfate adenylyltransfe 89.1 0.22 7.7E-06 49.1 3.5 25 136-160 395-419 (573)
483 2r8r_A Sensor protein; KDPD, P 89.1 0.19 6.6E-06 43.4 2.6 22 139-160 8-29 (228)
484 1yqt_A RNAse L inhibitor; ATP- 89.0 0.19 6.5E-06 49.2 2.9 22 138-159 48-69 (538)
485 3cmw_A Protein RECA, recombina 89.0 0.34 1.2E-05 53.5 5.0 73 137-211 383-473 (1706)
486 2yv5_A YJEQ protein; hydrolase 89.0 0.21 7.1E-06 45.0 2.9 33 121-158 153-186 (302)
487 3kjh_A CO dehydrogenase/acetyl 88.9 0.2 7E-06 42.9 2.8 20 140-159 3-22 (254)
488 2rcn_A Probable GTPase ENGC; Y 88.9 0.21 7E-06 46.3 2.9 34 122-160 205-238 (358)
489 1jwy_B Dynamin A GTPase domain 88.8 0.4 1.4E-05 42.9 4.7 26 135-160 22-47 (315)
490 3cmu_A Protein RECA, recombina 88.8 0.36 1.2E-05 54.1 5.1 72 136-209 1426-1515(2050)
491 1p9r_A General secretion pathw 88.7 0.37 1.3E-05 45.5 4.6 25 135-159 165-189 (418)
492 2qag_C Septin-7; cell cycle, c 88.7 0.2 6.7E-06 47.5 2.6 21 140-160 34-54 (418)
493 4tmk_A Protein (thymidylate ki 88.7 0.24 8.4E-06 42.2 3.0 24 138-161 4-27 (213)
494 3ozx_A RNAse L inhibitor; ATP 88.7 0.22 7.4E-06 48.8 3.0 24 136-159 24-47 (538)
495 1x6v_B Bifunctional 3'-phospho 88.7 0.22 7.6E-06 49.6 3.1 25 136-160 51-75 (630)
496 3euj_A Chromosome partition pr 88.7 0.21 7.3E-06 48.1 2.9 22 138-159 30-51 (483)
497 3ea0_A ATPase, para family; al 88.7 0.27 9.3E-06 42.1 3.4 24 136-159 3-27 (245)
498 3cmu_A Protein RECA, recombina 88.6 0.38 1.3E-05 53.9 5.1 72 137-210 383-472 (2050)
499 3bk7_A ABC transporter ATP-bin 88.5 0.21 7.3E-06 49.6 2.9 23 138-160 383-405 (607)
500 3cpj_B GTP-binding protein YPT 88.5 0.23 7.8E-06 42.1 2.7 25 137-161 13-37 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=1.5e-28 Score=244.59 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=140.5
Q ss_pred CC---cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhh--ccccCCCcCceEEEEeCCCC--Ccc---------
Q 020066 120 EG---SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFM--DDDIVSRFPRHIWFSVGKIL--DLS--------- 182 (331)
Q Consensus 120 vG---~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~--------- 182 (331)
+| ++++|.++|... +...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 59 899999999754 45689999999999999999999998 67899999999999999875 221
Q ss_pred ---------------ccHHHHHHHHHhccCCc-eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhc
Q 020066 183 ---------------TVMNVITIRCKEIPSSE-MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 183 ---------------~~~~~l~~~l~~~l~~k-r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~ 246 (331)
.+.+.+...+++.|+++ ||||||||||+. +.+ .++ .. +||+||||||++.|+..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~--~~~-----~~~-~~-~gs~ilvTTR~~~v~~~~ 281 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE--ETI-----RWA-QE-LRLRCLVTTRDVEISNAA 281 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH--HHH-----HHH-HH-TTCEEEEEESBGGGGGGC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc--hhh-----ccc-cc-CCCEEEEEcCCHHHHHHc
Confidence 13455678899999996 999999999984 322 122 12 689999999999999988
Q ss_pred cC-CccccccccCCChHHHHHHHhhhCCCCCCCcccccccCcccccChHHHHhHhhhhhhhhHHhhccccccCCChhh
Q 020066 247 KQ-TVPEAEHLIYFSESNSWSNLNCELPPSSQEAHRVEALEPESAMDEEDVASFKQFLLDVDLVATGESLETVPTSDR 323 (331)
Q Consensus 247 ~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~~~~~~~ 323 (331)
+. ..+| +|++|+.++||+||.+++|+... .+.+.++ ...++..|. ++|+++..+|+.|..+ +++.
T Consensus 282 ~~~~~~~--~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~------~~~I~~~c~--GlPLAl~~~g~~l~~~-~w~~ 347 (549)
T 2a5y_B 282 SQTCEFI--EVTSLEIDECYDFLEAYGMPMPV-GEKEEDV------LNKTIELSS--GNPATLMMFFKSCEPK-TFEK 347 (549)
T ss_dssp CSCEEEE--ECCCCCHHHHHHHHHHTSCCCC---CHHHHH------HHHHHHHHT--TCHHHHHHHHTTCCSS-SHHH
T ss_pred CCCCeEE--ECCCCCHHHHHHHHHHHhcCCCC-chhHHHH------HHHHHHHhC--CChHHHHHHHHHhccc-hHHH
Confidence 63 3578 99999999999999999987532 1222222 223444444 5677788889999876 4443
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.90 E-value=6.3e-24 Score=219.18 Aligned_cols=178 Identities=16% Similarity=0.150 Sum_probs=133.8
Q ss_pred CCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCc-eEEEEeCCCCCccc-----------
Q 020066 119 LEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-HIWFSVGKILDLST----------- 183 (331)
Q Consensus 119 ~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~----------- 183 (331)
.+| ++++|.++|... +..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...
T Consensus 130 ~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 378 888999999853 45899999999999999999999998888899997 88999998876430
Q ss_pred -----------------cHHHHHHHHHhcc---CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHH
Q 020066 184 -----------------VMNVITIRCKEIP---SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVA 243 (331)
Q Consensus 184 -----------------~~~~l~~~l~~~l---~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va 243 (331)
+.+.+...+++.| .+||+||||||||+ ...|+.+ + +||+||||||++.++
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~----pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N----LSCKILLTTRFKQVT 278 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H----SSCCEEEECSCSHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C----CCeEEEEeccChHHH
Confidence 1233344555544 78999999999998 4556553 3 689999999999998
Q ss_pred hhccCCcccccccc------CCChHHHHHHHhhhCCCCCCCcccccccCcccccChHHHHhHhhhhhhhhHHhhcccccc
Q 020066 244 TMMKQTVPEAEHLI------YFSESNSWSNLNCELPPSSQEAHRVEALEPESAMDEEDVASFKQFLLDVDLVATGESLET 317 (331)
Q Consensus 244 ~~~~~~~~~~~~l~------~L~~~~s~~Lf~~~af~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~ 317 (331)
..+.....| .++ +|+.+|||+||++. |+... . .+ .... +.++|+++..+|+.|++
T Consensus 279 ~~l~g~~vy--~LeL~d~dL~LS~eEA~eLF~~~-~g~~~-----e--------eL--~~eI-CgGLPLALkLaGs~Lr~ 339 (1221)
T 1vt4_I 279 DFLSAATTT--HISLDHHSMTLTPDEVKSLLLKY-LDCRP-----Q--------DL--PREV-LTTNPRRLSIIAESIRD 339 (1221)
T ss_dssp HHHHHHSSC--EEEECSSSSCCCHHHHHHHHHHH-HCCCT-----T--------TH--HHHH-CCCCHHHHHHHHHHHHH
T ss_pred HhcCCCeEE--EecCccccCCcCHHHHHHHHHHH-cCCCH-----H--------HH--HHHH-hCCCHHHHHHHHHHHhC
Confidence 755544467 787 99999999999998 33210 0 01 1111 34778888888999998
Q ss_pred CC-Chhhhhc
Q 020066 318 VP-TSDRMER 326 (331)
Q Consensus 318 ~~-~~~~~~~ 326 (331)
++ +.+.|+.
T Consensus 340 k~~s~eeW~~ 349 (1221)
T 1vt4_I 340 GLATWDNWKH 349 (1221)
T ss_dssp SCSSHHHHHH
T ss_pred CCCCHHHHhc
Confidence 86 4555543
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=2.7e-23 Score=223.08 Aligned_cols=183 Identities=17% Similarity=0.174 Sum_probs=137.3
Q ss_pred CCCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc-CCCc-CceEEEEeCCCCCcc-------
Q 020066 115 AETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI-VSRF-PRHIWFSVGKILDLS------- 182 (331)
Q Consensus 115 ~~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~------- 182 (331)
+...++| ++++|.++|...++..++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 3456889 888999999866677899999999999999999999997643 5556 556699998854321
Q ss_pred ----------------ccHHHHHHHHHhccCCc--eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 183 ----------------TVMNVITIRCKEIPSSE--MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 183 ----------------~~~~~l~~~l~~~l~~k--r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
.+.+.+...++..+.++ ||||||||||+ ...|.. + . +||+||||||++.|+.
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~--~~~~~~----~---~-~~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWD--PWVLKA----F---D-NQCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCC--HHHHTT----T---C-SSCEEEEEESSTTTTT
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCC--HHHHHh----h---c-CCCEEEEEcCCHHHHH
Confidence 35677888888888877 99999999997 333432 2 4 8999999999999985
Q ss_pred h-ccCCccccccccC-CChHHHHHHHhhhCCCCCCCcccccccCcccccChHHHHhHhhhhhhhhHHhhccccccCCC
Q 020066 245 M-MKQTVPEAEHLIY-FSESNSWSNLNCELPPSSQEAHRVEALEPESAMDEEDVASFKQFLLDVDLVATGESLETVPT 320 (331)
Q Consensus 245 ~-~~~~~~~~~~l~~-L~~~~s~~Lf~~~af~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~~~~ 320 (331)
. ++....+ .+.+ |++++|++||...++...+. +. ....+++..|. ++|+++..+|+.|.+++.
T Consensus 272 ~~~~~~~~~--~~~~~l~~~~a~~l~~~~~~~~~~~---~~------~~~~~i~~~~~--glPLal~~~~~~l~~~~~ 336 (1249)
T 3sfz_A 272 SVMGPKHVV--PVESGLGREKGLEILSLFVNMKKED---LP------AEAHSIIKECK--GSPLVVSLIGALLRDFPN 336 (1249)
T ss_dssp TCCSCBCCE--ECCSSCCHHHHHHHHHHHHTSCSTT---CC------THHHHHHHHTT--TCHHHHHHHHHHHHHSSS
T ss_pred hhcCCceEE--EecCCCCHHHHHHHHHHhhCCChhh---Cc------HHHHHHHHHhC--CCHHHHHHHHHHhhcChh
Confidence 5 4555678 8996 99999999999988543211 11 11223444444 467777888999988764
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=191.28 Aligned_cols=184 Identities=16% Similarity=0.155 Sum_probs=128.6
Q ss_pred CCCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc-CCCc-CceEEEEeCCCCCcc-------
Q 020066 115 AETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI-VSRF-PRHIWFSVGKILDLS------- 182 (331)
Q Consensus 115 ~~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~------- 182 (331)
+...++| +++.|.++|....+..++|+|+||||+||||||..+|++..+ ..+| +.++|++++......
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~ 201 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQN 201 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHH
Confidence 3456889 888899988754456899999999999999999999987655 6789 478999987652210
Q ss_pred ----------------ccHHHHHHHHHhccCC--ceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 183 ----------------TVMNVITIRCKEIPSS--EMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 183 ----------------~~~~~l~~~l~~~l~~--kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
.+.+.+...+...+.+ +++||||||||+ ...+ ..+ . +||+||||||+..++.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~--~~~l----~~l---~-~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWD--SWVL----KAF---D-SQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECC--HHHH----HTT---C-SSCEEEEEESCGGGGT
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCC--HHHH----HHh---c-CCCeEEEECCCcHHHH
Confidence 2344555566666655 789999999997 2222 233 4 7899999999999887
Q ss_pred hccCCccc-cccccCCChHHHHHHHhhhCCCCCCCcccccccCcccccChHHHHhHhhhhhhhhHHhhccccccCCC
Q 020066 245 MMKQTVPE-AEHLIYFSESNSWSNLNCELPPSSQEAHRVEALEPESAMDEEDVASFKQFLLDVDLVATGESLETVPT 320 (331)
Q Consensus 245 ~~~~~~~~-~~~l~~L~~~~s~~Lf~~~af~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~l~~~~~~~g~~l~~~~~ 320 (331)
.++. ..+ ...+++|+.+++++||...++..... + ......++..|.| +|+++..+|+.|.+.+.
T Consensus 272 ~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~---~------~~~~~~i~~~~~G--~PLal~~~a~~l~~~~~ 336 (591)
T 1z6t_A 272 SVMG-PKYVVPVESSLGKEKGLEILSLFVNMKKAD---L------PEQAHSIIKECKG--SPLVVSLIGALLRDFPN 336 (591)
T ss_dssp TCCS-CEEEEECCSSCCHHHHHHHHHHHHTSCGGG---S------CTHHHHHHHHHTT--CHHHHHHHHHHHHHSTT
T ss_pred hcCC-CceEeecCCCCCHHHHHHHHHHHhCCCccc---c------cHHHHHHHHHhCC--CcHHHHHHHHHHhcCch
Confidence 6542 233 00336899999999999988752110 0 1112233444554 55566777888887764
No 5
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.37 E-value=1.2e-12 Score=103.00 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=58.0
Q ss_pred HHHHHHHHHHH-HHHhh--Ch--hhHHHHHHHHHHHHHHHHHHHhc--cCcch----HHHHHHHhHhhhhhhhhhhh
Q 020066 9 LDLVCGRLDSN-ARAFW--NN--RGMKNLRVSLRKLHNLLRNVRED--AIPNY----LLTDLNGIASDVDGLIDAPM 74 (331)
Q Consensus 9 v~~l~~kl~~~-~~~~~--~~--~~l~~L~~~L~~i~~~l~~ae~~--~~~~~----Wl~~lr~~~yd~eD~ld~~~ 74 (331)
++.+++||.++ .++|. .| +++++|+++|.+|+++|.+++.+ +..++ |+++||+++||+||+||+|.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~ 79 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFL 79 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999 77775 45 99999999999999999999987 33444 99999999999999999998
No 6
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.00 E-value=6e-09 Score=90.47 Aligned_cols=151 Identities=12% Similarity=0.081 Sum_probs=95.0
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCc-----------------eEEEEeC
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-----------------HIWFSVG 176 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----------------~~wv~vs 176 (331)
..++| .++.+..++... ...+.+.|+|.+|+||||||+.+++.......+.. .-++...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 101 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHT-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEE
T ss_pred HHHhCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEec
Confidence 34678 667777777642 23357889999999999999999874322111100 0011111
Q ss_pred CCCCccccHHHHHHHHHhc----cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHH-h-hccCCc
Q 020066 177 KILDLSTVMNVITIRCKEI----PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVA-T-MMKQTV 250 (331)
Q Consensus 177 ~~~~~~~~~~~l~~~l~~~----l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va-~-~~~~~~ 250 (331)
... ....+.+...+... ..+++.+|||||++..+...++.+...+.... .+..+|+||+..... . ......
T Consensus 102 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~t~~~~~~~~~l~~r~~ 178 (250)
T 1njg_A 102 AAS--RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCL 178 (250)
T ss_dssp TTC--GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGSCHHHHTTSE
T ss_pred Ccc--cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCC-CceEEEEEeCChHhCCHHHHHHhh
Confidence 111 01222333333322 24568999999998776777888888776655 678899998765421 1 112234
Q ss_pred cccccccCCChHHHHHHHhhhCC
Q 020066 251 PEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
.+ .+++++.++..+++...+.
T Consensus 179 ~i--~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 179 QF--HLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp EE--ECCCCCHHHHHHHHHHHHH
T ss_pred hc--cCCCCCHHHHHHHHHHHHH
Confidence 67 8999999999999998663
No 7
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.96 E-value=6.2e-09 Score=89.34 Aligned_cols=147 Identities=16% Similarity=0.119 Sum_probs=92.3
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCK 193 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~ 193 (331)
..++| ..+.+.+++... ..+.+.|+|.+|+|||+||+.+++... ...+. ..++.+..... .....+...+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLF-GENWR-DNFIEMNASDE--RGIDVVRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGGG-GGEEEEETTCT--TCHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHh-ccccc-cceEEeccccc--cChHHHHHHHH
Confidence 34667 667777777642 333388999999999999999987421 11121 22333322211 11222222222
Q ss_pred hcc------CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHH--hhccCCccccccccCCChHHHH
Q 020066 194 EIP------SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVA--TMMKQTVPEAEHLIYFSESNSW 265 (331)
Q Consensus 194 ~~l------~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va--~~~~~~~~~~~~l~~L~~~~s~ 265 (331)
... .+++.+|||||++......++.+...+.... .++++|+||+...-. ........+ .+.+++.++..
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~~~~~~l~~r~~~i--~~~~~~~~~~~ 167 (226)
T 2chg_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNYVSRIIEPIQSRCAVF--RFKPVPKEAMK 167 (226)
T ss_dssp HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTSEEE--ECCCCCHHHHH
T ss_pred HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhcCHHHHHhCcee--ecCCCCHHHHH
Confidence 221 3678999999998876666777776666555 678899998765411 111223367 89999999999
Q ss_pred HHHhhhC
Q 020066 266 SNLNCEL 272 (331)
Q Consensus 266 ~Lf~~~a 272 (331)
.++.+.+
T Consensus 168 ~~l~~~~ 174 (226)
T 2chg_A 168 KRLLEIC 174 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998865
No 8
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.87 E-value=3.2e-09 Score=100.63 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=89.9
Q ss_pred CCCCC---cHHHHHHHH-hcC--C--CCcEEEEE--EecCCchhHHHHHHHhhccccC---CCcC-ceEEEEeCCCCCcc
Q 020066 117 TELEG---SVDSVKNAL-LRD--G--STVRFIHI--VGVSGTEVTHIAHRVFMDDDIV---SRFP-RHIWFSVGKILDLS 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L-~~~--~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 182 (331)
..++| +.+.|.+.| ... . .....+.| +|++|+|||||++.+++..... ..|+ ..+|+......+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 56788 777887777 321 2 23445556 9999999999999998753211 1122 24566643332221
Q ss_pred ------------------ccHHHHHHHHHhccC--CceeEEEEeCCCCC------CHHhHHHHHHhhcCCC--C--CCcE
Q 020066 183 ------------------TVMNVITIRCKEIPS--SEMLLIALDGLCDL------NDDNLANLRLLVTNMD--L--VGFY 232 (331)
Q Consensus 183 ------------------~~~~~l~~~l~~~l~--~kr~LlVLDdvw~~------~~~~~~~l~~~l~~~~--~--~gs~ 232 (331)
.+...+...+...+. +++++|||||+|.. +...+..+...+.... . .+..
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 123344444555543 67999999999862 1233444433332111 0 2345
Q ss_pred EEEecCCchHHhhcc--------C-CccccccccCCChHHHHHHHhhh
Q 020066 233 VLVTTQSRSVATMMK--------Q-TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 233 IIvTTR~~~va~~~~--------~-~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
||+||+..++...+. . ...+ .+.+|+.++.+++|...
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i--~l~~l~~~e~~~ll~~~ 227 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKL--HLPAYKSRELYTILEQR 227 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEE--ECCCCCHHHHHHHHHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCee--eeCCCCHHHHHHHHHHH
Confidence 888887665432111 1 1227 89999999999999764
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.76 E-value=8e-09 Score=97.01 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=92.7
Q ss_pred CCCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhcccc----CCCc--CceEEEEeCCCC-Ccc--
Q 020066 117 TELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDI----VSRF--PRHIWFSVGKIL-DLS-- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~----~~~F--~~~~wv~vs~~~-~~~-- 182 (331)
..++| +.+.+.++|..- ....+.+.|+|.+|+|||+||+.+++...- ...+ ...+|++.+... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 56788 666777666431 344568899999999999999999874211 0111 234566543322 111
Q ss_pred -----------------ccHHHHHHHHHhccCCceeEEEEeCCCCCCHHhHHHH-HHhhcCCCCCCcEEEEecCCchHHh
Q 020066 183 -----------------TVMNVITIRCKEIPSSEMLLIALDGLCDLNDDNLANL-RLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 183 -----------------~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l-~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
.....+...+...+..++.+||||+++......+..+ ...+.... .+..||+||+......
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCchHh
Confidence 1123445556666666666999999976321111222 33343333 5788999998753211
Q ss_pred hc-----cC-CccccccccCCChHHHHHHHhhh
Q 020066 245 MM-----KQ-TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 245 ~~-----~~-~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
.+ .. ...+ .+++++.++...+|...
T Consensus 179 ~l~~~l~sr~~~~i--~l~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 179 YMEPRVLSSLGPSV--IFKPYDAEQLKFILSKY 209 (384)
T ss_dssp TSCHHHHHTCCCEE--EECCCCHHHHHHHHHHH
T ss_pred hhCHHHHhcCCCeE--EECCCCHHHHHHHHHHH
Confidence 11 11 1267 89999999999999987
No 10
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=1.8e-08 Score=92.95 Aligned_cols=141 Identities=9% Similarity=0.118 Sum_probs=88.4
Q ss_pred CCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC------Cc-----
Q 020066 116 ETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL------DL----- 181 (331)
Q Consensus 116 ~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~----- 181 (331)
+..++| +.+.|.+++.. . +++.|+|++|+|||||++.+++.. . .+|+...... +.
T Consensus 11 ~~~~~gR~~el~~L~~~l~~--~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN--Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH--C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhc--C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 345778 77788887763 2 689999999999999999998753 1 4566543211 00
Q ss_pred ------------------------------cccHHHHHHHHHhccCC-ceeEEEEeCCCCCC-------HHhHHHHHHhh
Q 020066 182 ------------------------------STVMNVITIRCKEIPSS-EMLLIALDGLCDLN-------DDNLANLRLLV 223 (331)
Q Consensus 182 ------------------------------~~~~~~l~~~l~~~l~~-kr~LlVLDdvw~~~-------~~~~~~l~~~l 223 (331)
..+...+...+...... ++++|||||++..+ ...+..+...+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 01233344444443332 38999999998632 12233333333
Q ss_pred cCCCCCCcEEEEecCCchH-Hhh----------ccC-CccccccccCCChHHHHHHHhhh
Q 020066 224 TNMDLVGFYVLVTTQSRSV-ATM----------MKQ-TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 224 ~~~~~~gs~IIvTTR~~~v-a~~----------~~~-~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
. .. ++.++|+|++...+ ... .+. ...+ .+.||+.+++.+++...
T Consensus 160 ~-~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i--~l~pl~~~e~~~~l~~~ 215 (350)
T 2qen_A 160 D-SL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEV--LVKPFDKDTSVEFLKRG 215 (350)
T ss_dssp H-HC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEE--ECCCCCHHHHHHHHHHH
T ss_pred H-hc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCcccee--eCCCCCHHHHHHHHHHH
Confidence 2 23 56789999887653 221 111 2357 89999999999999864
No 11
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.74 E-value=2.9e-08 Score=90.68 Aligned_cols=149 Identities=10% Similarity=0.069 Sum_probs=92.0
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcC-ceEEEEeCCCCCccccHHHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFP-RHIWFSVGKILDLSTVMNVITIRC 192 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~l~~~l 192 (331)
..++| ..+.+.+++.. ...+.+.++|.+|+||||+|+.+++.-.. ..+. ..++++.+..... .....+...+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKD--GNMPHMIISGMPGIGKTTSVHCLAHELLG-RSYADGVLELNASDDRGI-DVVRNQIKHF 96 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHS--CCCCCEEEECSTTSSHHHHHHHHHHHHHG-GGHHHHEEEECTTSCCSH-HHHHTHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCCEEEecCccccCh-HHHHHHHHHH
Confidence 35678 66677777764 23333889999999999999999874211 1111 1233332222111 1122222222
Q ss_pred H---hcc-CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchH--HhhccCCccccccccCCChHHHHH
Q 020066 193 K---EIP-SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSV--ATMMKQTVPEAEHLIYFSESNSWS 266 (331)
Q Consensus 193 ~---~~l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~v--a~~~~~~~~~~~~l~~L~~~~s~~ 266 (331)
. ..+ .+++.++|+||++......++.+...+.... .++.+|+||....- .........+ .+.+++.++...
T Consensus 97 ~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~~~~~~l~~~l~sr~~~i--~~~~~~~~~~~~ 173 (323)
T 1sxj_B 97 AQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS-NSTRFAFACNQSNKIIEPLQSQCAIL--RYSKLSDEDVLK 173 (323)
T ss_dssp HHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTSEEE--ECCCCCHHHHHH
T ss_pred HhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccC-CCceEEEEeCChhhchhHHHhhceEE--eecCCCHHHHHH
Confidence 2 123 5568999999998876666777766665555 67888888876431 1112233467 999999999999
Q ss_pred HHhhhC
Q 020066 267 NLNCEL 272 (331)
Q Consensus 267 Lf~~~a 272 (331)
++...+
T Consensus 174 ~l~~~~ 179 (323)
T 1sxj_B 174 RLLQII 179 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.73 E-value=4.2e-08 Score=90.68 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=87.3
Q ss_pred CCCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC-----CCc------
Q 020066 116 ETELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI-----LDL------ 181 (331)
Q Consensus 116 ~~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~------ 181 (331)
+..++| +.+.|.+ +. . +++.|+|++|+|||+|++.+.+... . ..+|+..... .+.
T Consensus 12 ~~~~~gR~~el~~L~~-l~--~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LR--A---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TC--S---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred HHHhcChHHHHHHHHH-hc--C---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHHH
Confidence 345778 6677777 43 2 6899999999999999999987532 1 2466665421 010
Q ss_pred ----------------------------------------cccHHHHHHHHHhccCCceeEEEEeCCCCCCH---HhHHH
Q 020066 182 ----------------------------------------STVMNVITIRCKEIPSSEMLLIALDGLCDLND---DNLAN 218 (331)
Q Consensus 182 ----------------------------------------~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~---~~~~~ 218 (331)
......+...+.+... ++++|||||++..+. ..|..
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHH
Confidence 0123334444444332 499999999976321 12323
Q ss_pred HHHhhcCCCCCCcEEEEecCCchHHh-h----------ccC-CccccccccCCChHHHHHHHhhh
Q 020066 219 LRLLVTNMDLVGFYVLVTTQSRSVAT-M----------MKQ-TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 219 l~~~l~~~~~~gs~IIvTTR~~~va~-~----------~~~-~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+...+.... .+.++|+|++...... . .+. ...+ .+.+|+.+++.+++...
T Consensus 160 ~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i--~l~~l~~~e~~~~l~~~ 221 (357)
T 2fna_A 160 ALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTV--ELKPFSREEAIEFLRRG 221 (357)
T ss_dssp HHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEE--EECCCCHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCcccee--ecCCCCHHHHHHHHHHH
Confidence 333333223 4679999999765322 1 111 2357 89999999999999874
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=1.2e-07 Score=88.87 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=95.9
Q ss_pred CCCCC---cHHHHHHHHhcC----CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-------
Q 020066 117 TELEG---SVDSVKNALLRD----GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS------- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~------- 182 (331)
..++| +.+.+..++... ....+.+.|+|.+|+|||||++.+++....... ...+|++.+...+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 56778 677777777542 223348889999999999999999875322111 134455544433211
Q ss_pred -----------ccHHHHHHHHHhcc--CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC---CCcEEEEecCCchHHhhc
Q 020066 183 -----------TVMNVITIRCKEIP--SSEMLLIALDGLCDLNDDNLANLRLLVTNMDL---VGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 183 -----------~~~~~l~~~l~~~l--~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~---~gs~IIvTTR~~~va~~~ 246 (331)
.....+...+...+ .+++.+||||+++..+......+...+..... .+..||++|+.......+
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 12333333333333 35688999999988766666666665532110 266788888876544333
Q ss_pred cC-------CccccccccCCChHHHHHHHhhhC
Q 020066 247 KQ-------TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 ~~-------~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.. ...+ .+.+++.++..+++...+
T Consensus 176 ~~~~~~r~~~~~i--~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 176 DPSTRGIMGKYVI--RFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp CHHHHHHHTTCEE--ECCCCBHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceE--EeCCCCHHHHHHHHHHHH
Confidence 21 1247 899999999999998764
No 14
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.71 E-value=1.4e-08 Score=94.90 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=90.8
Q ss_pred CCCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhccccCCCc---CceEEEEeCCCCCcc------
Q 020066 117 TELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF---PRHIWFSVGKILDLS------ 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~vs~~~~~~------ 182 (331)
..++| +.+.+.+++... ......+.|+|.+|+|||||++.+++.. ...+ ...+|++.....+..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL--HKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH--HHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH--HHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 56778 677777776532 3445688899999999999999998742 1111 134565533211110
Q ss_pred ------------ccHHHHHHHHHhcc--CCceeEEEEeCCCCCC----HHhHHHHHHhhcC-CCCCCcEEEEecCCchHH
Q 020066 183 ------------TVMNVITIRCKEIP--SSEMLLIALDGLCDLN----DDNLANLRLLVTN-MDLVGFYVLVTTQSRSVA 243 (331)
Q Consensus 183 ------------~~~~~l~~~l~~~l--~~kr~LlVLDdvw~~~----~~~~~~l~~~l~~-~~~~gs~IIvTTR~~~va 243 (331)
.+...+...+.+.+ .+++.+||||+++... ...+..+...+.. .. .+..+|+||+.....
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~-~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK-SKISFIGITNDVKFV 176 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC---EEEEEEESCGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC-CeEEEEEEECCCChH
Confidence 12333344444443 3458999999986521 2234444444422 22 456788888876543
Q ss_pred hhcc-----CC--ccccccccCCChHHHHHHHhhhC
Q 020066 244 TMMK-----QT--VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 244 ~~~~-----~~--~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
..+. .. ..+ .+++++.++..++|...+
T Consensus 177 ~~~~~~~~~r~~~~~i--~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEI--IFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGCTTHHHHTTTTEEE--EECCCCHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeE--EeCCCCHHHHHHHHHHHH
Confidence 3222 11 367 899999999999998753
No 15
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.71 E-value=4.4e-08 Score=91.67 Aligned_cols=153 Identities=14% Similarity=0.075 Sum_probs=89.7
Q ss_pred CCCCC---cHHHHHHHHhcC--CCCcEEEEEEecCCchhHHHHHHHhhccccCC---CcC-ceEEEEeCCCCCcc-----
Q 020066 117 TELEG---SVDSVKNALLRD--GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS---RFP-RHIWFSVGKILDLS----- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~-~~~wv~vs~~~~~~----- 182 (331)
..++| +.+.+..+|... ....+.+.|+|.+|+||||||+.+++...-.. ... ..+|++.....+..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 56778 777777777432 34456788999999999999999987431110 001 23455544332211
Q ss_pred -------------ccHHHHHHHHHhcc--CCceeEEEEeCCCCCCHH--hHHHHH---HhhcCC--CCCCcEEEEecCCc
Q 020066 183 -------------TVMNVITIRCKEIP--SSEMLLIALDGLCDLNDD--NLANLR---LLVTNM--DLVGFYVLVTTQSR 240 (331)
Q Consensus 183 -------------~~~~~l~~~l~~~l--~~kr~LlVLDdvw~~~~~--~~~~l~---~~l~~~--~~~gs~IIvTTR~~ 240 (331)
.....+...+...+ .+++.+|+||+++..... ..+.+. ...... . .+..+|.||+..
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~-~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDR-VWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC------CEEEEECSCS
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCC-ceEEEEEEECCC
Confidence 12334444455554 456899999999863211 122232 222211 3 566788888766
Q ss_pred hHHhhc-----cCC--ccccccccCCChHHHHHHHhhhC
Q 020066 241 SVATMM-----KQT--VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 241 ~va~~~-----~~~--~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.....+ ... ..+ .+++++.++...+|...+
T Consensus 178 ~~~~~l~~~l~~r~~~~~i--~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVEL--VFPPYTAPQLRDILETRA 214 (387)
T ss_dssp TTSSSSCHHHHTTTTSEEC--CBCCCCHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEE--eeCCCCHHHHHHHHHHHH
Confidence 321111 111 357 899999999999999864
No 16
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.52 E-value=2.5e-07 Score=84.60 Aligned_cols=149 Identities=13% Similarity=0.124 Sum_probs=89.7
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccH-HHHHHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVM-NVITIR 191 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~-~~l~~~ 191 (331)
..++| ..+.+.+++.. ...+-+.++|.+|+||||+|+.+++.... ..+ ...++.+....... ... +.+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALARELFG-ENW-RHNFLELNASDERGINVIREKVKEF 100 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH--TCCCEEEEESCTTSSHHHHHHHHHHHHHG-GGH-HHHEEEEETTCHHHHHTTHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHhcC-Ccc-cCceEEeeccccCchHHHHHHHHHH
Confidence 34678 56667776664 23334889999999999999999874211 111 11122222111000 111 111111
Q ss_pred HHhc-cC-CceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchH-H-hhccCCccccccccCCChHHHHHH
Q 020066 192 CKEI-PS-SEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSV-A-TMMKQTVPEAEHLIYFSESNSWSN 267 (331)
Q Consensus 192 l~~~-l~-~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~v-a-~~~~~~~~~~~~l~~L~~~~s~~L 267 (331)
.... +. +++.++|+|+++......++.+...+.... .++++|+||....- . ........+ .+.+++.++...+
T Consensus 101 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~l~sr~~~~--~~~~l~~~~~~~~ 177 (327)
T 1iqp_A 101 ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFS-SNVRFILSCNYSSKIIEPIQSRCAIF--RFRPLRDEDIAKR 177 (327)
T ss_dssp HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHTEEEE--ECCCCCHHHHHHH
T ss_pred HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCCccccCHHHHhhCcEE--EecCCCHHHHHHH
Confidence 1111 22 678899999998876667777777776555 67889988876541 1 111123367 8999999999999
Q ss_pred HhhhC
Q 020066 268 LNCEL 272 (331)
Q Consensus 268 f~~~a 272 (331)
+...+
T Consensus 178 l~~~~ 182 (327)
T 1iqp_A 178 LRYIA 182 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 17
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.47 E-value=1.3e-07 Score=79.03 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=76.5
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcccc---CCC--cCceEEEEeCCCC---CccccH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDI---VSR--FPRHIWFSVGKIL---DLSTVM 185 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~--F~~~~wv~vs~~~---~~~~~~ 185 (331)
..++| ..+.+.+.+.. .....+.|+|.+|+|||+||+.+++.... ... ....+++..+... ......
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 99 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHH
T ss_pred cccccchHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccH
Confidence 45677 67777777763 33455779999999999999999874211 111 1122333322111 111111
Q ss_pred H-HHHHHHHhc-cCCceeEEEEeCCCCCC--------HHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh-------ccC
Q 020066 186 N-VITIRCKEI-PSSEMLLIALDGLCDLN--------DDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM-------MKQ 248 (331)
Q Consensus 186 ~-~l~~~l~~~-l~~kr~LlVLDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~-------~~~ 248 (331)
. .+...+... -.+++.+|+|||+.... ....+.+...+. . .+..+|.||........ ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~l~~r 176 (195)
T 1jbk_A 100 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R--GELHCVGATTLDEYRQYIEKDAALERR 176 (195)
T ss_dssp HHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T--TSCCEEEEECHHHHHHHTTTCHHHHTT
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c--CCeEEEEeCCHHHHHHHHhcCHHHHHH
Confidence 1 111111111 14568899999997531 111333333332 2 34567777765543211 112
Q ss_pred CccccccccCCChHHHHHHH
Q 020066 249 TVPEAEHLIYFSESNSWSNL 268 (331)
Q Consensus 249 ~~~~~~~l~~L~~~~s~~Lf 268 (331)
...+ .+.+++.++..+++
T Consensus 177 ~~~i--~~~~p~~~~~~~il 194 (195)
T 1jbk_A 177 FQKV--FVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEE--ECCCCCHHHHHTTC
T ss_pred hcee--ecCCCCHHHHHHHh
Confidence 2246 78888888776654
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.43 E-value=2.7e-06 Score=79.29 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=92.7
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCc-------------------CceEEEE
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF-------------------PRHIWFS 174 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~~~~wv~ 174 (331)
..++| ..+.+.+.+.. ......+.|+|..|+||||+|+.+.+.......+ .....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~-~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEID 94 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH-TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEE
T ss_pred hhccCcHHHHHHHHHHHHh-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEec
Confidence 34678 56677777654 2223467899999999999999987643221111 0112222
Q ss_pred eCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-H-HhhccCCcc
Q 020066 175 VGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-V-ATMMKQTVP 251 (331)
Q Consensus 175 vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-v-a~~~~~~~~ 251 (331)
.+.. ........+...+... ..+++.+||+|++...+...++.+...+.... .+..+|++|.... + .........
T Consensus 95 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~l~~~l~sr~~~ 172 (373)
T 1jr3_A 95 AASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPP-EHVKFLLATTDPQKLPVTILSRCLQ 172 (373)
T ss_dssp TTCS-CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCC-SSEEEEEEESCGGGSCHHHHTTSEE
T ss_pred cccc-CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCC-CceEEEEEeCChHhCcHHHHhheeE
Confidence 2111 1112344444433322 34667899999998776677788877776555 5677777776543 1 111223346
Q ss_pred ccccccCCChHHHHHHHhhhC
Q 020066 252 EAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 252 ~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ .+.+++.++...++...+
T Consensus 173 i--~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 173 F--HLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp E--ECCCCCHHHHHHHHHHHH
T ss_pred e--eCCCCCHHHHHHHHHHHH
Confidence 7 899999999999887654
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.31 E-value=1.7e-06 Score=78.71 Aligned_cols=148 Identities=15% Similarity=0.080 Sum_probs=87.1
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcC-ceEEEEeCCCCCccccHHHHHHHHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFP-RHIWFSVGKILDLSTVMNVITIRCK 193 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~l~~~l~ 193 (331)
.++| ..+.+.+++.. ...+.+-++|..|+|||++|+.+.+.-. ...+. ..+.++.+...... ........+.
T Consensus 18 ~~~g~~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 93 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYVER--KNIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID-VVRHKIKEFA 93 (319)
T ss_dssp GSCSCHHHHHHHHTTTTT--TCCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT-TSSHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHhC--CCCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH-HHHHHHHHHH
Confidence 4667 44455554442 3333378999999999999999987421 11121 12233333221111 1111222222
Q ss_pred -h-cc-CCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHHHHH
Q 020066 194 -E-IP-SSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSWSNL 268 (331)
Q Consensus 194 -~-~l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~~Lf 268 (331)
. .+ .+++.++|+|++........+.+...+.... .++++|+||.... +. ........+ .+.+++.++...++
T Consensus 94 ~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~-~~~~~i~~~~~~~~l~~~l~sr~~~i--~~~~~~~~~~~~~l 170 (319)
T 2chq_A 94 RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYS-KSCRFILSCNYVSRIIEPIQSRCAVF--RFKPVPKEAMKKRL 170 (319)
T ss_dssp HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSS-SSEEEEEEESCGGGSCHHHHTTCEEE--ECCCCCHHHHHHHH
T ss_pred hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcC-CCCeEEEEeCChhhcchHHHhhCeEE--EecCCCHHHHHHHH
Confidence 1 12 3668899999998766666666766665545 6778888886554 11 111233467 89999999999888
Q ss_pred hhhC
Q 020066 269 NCEL 272 (331)
Q Consensus 269 ~~~a 272 (331)
...+
T Consensus 171 ~~~~ 174 (319)
T 2chq_A 171 LEIC 174 (319)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
No 20
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.24 E-value=9.1e-07 Score=85.20 Aligned_cols=129 Identities=16% Similarity=0.137 Sum_probs=74.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcC--ceEEEEeCCCCCccccHHHH----HHHHHhccCCceeEEEEeCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFP--RHIWFSVGKILDLSTVMNVI----TIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~l----~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
..-+.|+|.+|+||||||+.+++.. ...|. ..++++.+.-. ..-...+ ...+...+..+.-+|+|||++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITSEKFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQF 205 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEHHHHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeHHHHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCccc
Confidence 6678899999999999999998742 22221 23344322110 0000000 0112222333678999999975
Q ss_pred CCH--HhHHHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 211 LND--DNLANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 211 ~~~--~~~~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... ...+.+...+.. .. .|..||+||.+.. +...+....++ .+++++.++-..++.+.+
T Consensus 206 l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i--~l~~p~~e~r~~iL~~~~ 276 (440)
T 2z4s_A 206 LIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVA--KLEPPDEETRKSIARKML 276 (440)
T ss_dssp GSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCC--BCCCCCHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEE--EeCCCCHHHHHHHHHHHH
Confidence 421 223334433321 12 5678999887632 22223334567 899999999999998865
No 21
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=4.4e-06 Score=75.90 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=75.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeC--CCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC-
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVG--KILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~- 211 (331)
..-+-|+|.+|+|||+||+.+.+.-.........-++.++ .-.... .....+...+... +..+|+||++...
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~ 143 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLY 143 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhc
Confidence 3457799999999999999877643222221111233332 111111 1122222222222 3469999999832
Q ss_pred --------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh-------ccCC-ccccccccCCChHHHHHHHhhhC
Q 020066 212 --------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM-------MKQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 --------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~-------~~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.......|...+.... .+..||.||........ .... ..+ .+.+++.++-..++..++
T Consensus 144 ~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i--~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 144 RPDNERDYGQEAIEILLQVMENNR-DDLVVILAGYADRMENFFQSNPGFRSRIAHHI--EFPDYSDEELFEIAGHML 217 (309)
T ss_dssp CCC---CCTHHHHHHHHHHHHHCT-TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEE--EECCCCHHHHHHHHHHHH
T ss_pred cCCCcccccHHHHHHHHHHHhcCC-CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEE--EcCCcCHHHHHHHHHHHH
Confidence 4555667777666555 67788888865432111 1111 456 899999999999998765
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=2.9e-05 Score=68.52 Aligned_cols=128 Identities=12% Similarity=0.108 Sum_probs=70.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCC--
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLN-- 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-- 212 (331)
.+-+-++|.+|+|||+||+.+++.. ... .+.+..+.-.+.. .....+...+.......+.+|+||++....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~ 113 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA--QVP---FLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH--TCC---EEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhcc
Confidence 3457799999999999999998843 211 2233333222211 112223333333334457899999997631
Q ss_pred -------------HHhHHHHHHhhcC--CCCCCcEEEEecCCchHH-h-hcc--CC-ccccccccCCChHHHHHHHhhhC
Q 020066 213 -------------DDNLANLRLLVTN--MDLVGFYVLVTTQSRSVA-T-MMK--QT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 -------------~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va-~-~~~--~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
......+...+.. .. .+..||.||...... . ... .. ..+ .+.+.+.++-.++|..++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vi~~tn~~~~ld~~l~~~~R~~~~i--~i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 114 RSTTMSGFSNTEEEQTLNQLLVEMDGMGTT-DHVIVLASTNRADILDGALMRPGRLDRHV--FIDLPTLQERREIFEQHL 190 (262)
T ss_dssp -------------CHHHHHHHHHHHTCCTT-CCEEEEEEESCGGGGGSGGGSTTSCCEEE--ECCSCCHHHHHHHHHHHH
T ss_pred ccccccCccchhHHHHHHHHHHHhhCcCCC-CCEEEEecCCChhhcCHHHhcCCcCCeEE--EeCCcCHHHHHHHHHHHH
Confidence 1122334443332 22 455677777654421 1 111 22 356 788999999999988765
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.18 E-value=6.1e-07 Score=78.04 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=70.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDN 215 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~ 215 (331)
..+.+.|+|.+|+||||||+.+++..... .....|+..+...+.. .. ....+ .++.+|||||++......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~~------~~-~~~~~-~~~~vliiDe~~~~~~~~ 120 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASIS------TA-LLEGL-EQFDLICIDDVDAVAGHP 120 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGSC------GG-GGTTG-GGSSEEEEETGGGGTTCH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHH------HH-HHHhc-cCCCEEEEeccccccCCH
Confidence 45678899999999999999998743221 2234565543322111 00 01111 346799999997643222
Q ss_pred --HHHHHHhhcCC-CCCC-cEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 216 --LANLRLLVTNM-DLVG-FYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 216 --~~~l~~~l~~~-~~~g-s~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+.+...+... . .+ .++|+||+... +...+.....+ .+.+++.++..+++...+
T Consensus 121 ~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i--~l~~~~~~~~~~~l~~~~ 187 (242)
T 3bos_A 121 LWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTY--QLQPMMDDEKLAALQRRA 187 (242)
T ss_dssp HHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEE--ECCCCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceE--EeCCCCHHHHHHHHHHHH
Confidence 23333332210 1 22 24777776332 11111122567 899999999999998865
No 24
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=1.7e-05 Score=73.44 Aligned_cols=71 Identities=15% Similarity=0.107 Sum_probs=50.5
Q ss_pred ceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHh-hccCCccccccccCCChHHHHHHHhhhC
Q 020066 199 EMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VAT-MMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 199 kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~-~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
++-++|||++...+....+.+...+.... .++.+|++|.+.. +.. .......+ ++.+++.++....+.+.+
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~l~~~l~sR~~~~--~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIAPIKSQCLLI--RCPAPSDSEISTILSDVV 206 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCHHHHTTSEEE--ECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHHHHHHHHhhceEE--ecCCcCHHHHHHHHHHHH
Confidence 56799999998877666777777665544 6778888776543 221 12233567 899999999999888755
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.13 E-value=1.2e-05 Score=72.22 Aligned_cols=130 Identities=13% Similarity=0.097 Sum_probs=73.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
...-+-|+|.+|+|||+||+.+++.. ...| +.+..+.-.... .....+...+......++.+|+||++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~--~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 124 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET--NATF---IRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAA 124 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT--TCEE---EEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHB
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcc
Confidence 34557899999999999999998742 2111 223222221111 11222223333334456789999998642
Q ss_pred ---------CH---HhHHHHHHhhc--CCCCCCcEEEEecCCchHHh--hcc--C-CccccccccCCChHHHHHHHhhhC
Q 020066 212 ---------ND---DNLANLRLLVT--NMDLVGFYVLVTTQSRSVAT--MMK--Q-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ---------~~---~~~~~l~~~l~--~~~~~gs~IIvTTR~~~va~--~~~--~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+. .....+...+. ... .+..||.||...+... ... . ...+ .+.+.+.++-.++|...+
T Consensus 125 ~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i--~~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 125 KRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPDILDPAILRPGRFDRII--EVPAPDEKGRLEILKIHT 201 (285)
T ss_dssp CCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGGGBCHHHHSTTSEEEEE--ECCCCCHHHHHHHHHHHH
T ss_pred cCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCchhcCHHHcCCCcCCeEE--EECCCCHHHHHHHHHHHH
Confidence 11 12223333332 122 4667888887554211 111 1 2356 899999999999998876
Q ss_pred C
Q 020066 273 P 273 (331)
Q Consensus 273 f 273 (331)
.
T Consensus 202 ~ 202 (285)
T 3h4m_A 202 R 202 (285)
T ss_dssp T
T ss_pred h
Confidence 4
No 26
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.06 E-value=2.4e-05 Score=75.39 Aligned_cols=136 Identities=11% Similarity=0.084 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHH-hccCCceeE
Q 020066 124 DSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCK-EIPSSEMLL 202 (331)
Q Consensus 124 ~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~-~~l~~kr~L 202 (331)
..|...+.. ...+.+.++|..|+||||||+.+.+.. ... ++.++.......+...+..... ....+++.+
T Consensus 39 ~~L~~~i~~--~~~~~vLL~GppGtGKTtlAr~ia~~~--~~~-----f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~i 109 (447)
T 3pvs_A 39 KPLPRAIEA--GHLHSMILWGPPGTGKTTLAEVIARYA--NAD-----VERISAVTSGVKEIREAIERARQNRNAGRRTI 109 (447)
T ss_dssp SHHHHHHHH--TCCCEEEEECSTTSSHHHHHHHHHHHT--TCE-----EEEEETTTCCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHc--CCCcEEEEECCCCCcHHHHHHHHHHHh--CCC-----eEEEEeccCCHHHHHHHHHHHHHhhhcCCCcE
Confidence 455555553 345678899999999999999998842 222 2333322221122222222221 122567899
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch--H-HhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS--V-ATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~--v-a~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
|+||++........+.|+..+..+. -.-|..||.+.. + ........++ .+++++.++...++.+.+
T Consensus 110 LfIDEI~~l~~~~q~~LL~~le~~~--v~lI~att~n~~~~l~~aL~sR~~v~--~l~~l~~edi~~il~~~l 178 (447)
T 3pvs_A 110 LFVDEVHRFNKSQQDAFLPHIEDGT--ITFIGATTENPSFELNSALLSRARVY--LLKSLSTEDIEQVLTQAM 178 (447)
T ss_dssp EEEETTTCC------CCHHHHHTTS--CEEEEEESSCGGGSSCHHHHTTEEEE--ECCCCCHHHHHHHHHHHH
T ss_pred EEEeChhhhCHHHHHHHHHHHhcCc--eEEEecCCCCcccccCHHHhCceeEE--eeCCcCHHHHHHHHHHHH
Confidence 9999998876555666777665432 223334555543 1 1222334577 899999999999988764
No 27
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.4e-05 Score=73.76 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=85.4
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCc-eEEEEeCCCCCccccHHHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-HIWFSVGKILDLSTVMNVITIRC 192 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~l~~~l 192 (331)
..++| .++.+..++... ..+.+.++|..|+||||+|+.+.+.-.....+.. ...++.+...... .........
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA--NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREKVKNF 113 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT--TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcC--CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHHHHHH
Confidence 34667 677777777642 2223789999999999999999874211111111 1222222211111 111111111
Q ss_pred Hh-------------ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHh-hccCCcccccccc
Q 020066 193 KE-------------IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VAT-MMKQTVPEAEHLI 257 (331)
Q Consensus 193 ~~-------------~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~-~~~~~~~~~~~l~ 257 (331)
.. .-.+++-+|++|++........+.+...+.... ..+++|++|.... +.. .......+ .+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-~~~~~il~~~~~~~l~~~l~sR~~~i--~~~ 190 (353)
T 1sxj_D 114 ARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-GVTRFCLICNYVTRIIDPLASQCSKF--RFK 190 (353)
T ss_dssp HHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHHHSEEE--ECC
T ss_pred hhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-CCceEEEEeCchhhCcchhhccCceE--EeC
Confidence 11 112355699999998766666667776665544 5677777775443 111 11122357 899
Q ss_pred CCChHHHHHHHhhhC
Q 020066 258 YFSESNSWSNLNCEL 272 (331)
Q Consensus 258 ~L~~~~s~~Lf~~~a 272 (331)
+++.++....+...+
T Consensus 191 ~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 191 ALDASNAIDRLRFIS 205 (353)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998888754
No 28
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.03 E-value=9.9e-06 Score=74.36 Aligned_cols=139 Identities=15% Similarity=0.182 Sum_probs=73.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHH----HHHHHhccCCce
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVI----TIRCKEIPSSEM 200 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l----~~~l~~~l~~kr 200 (331)
.+...+.........+.|+|.+|+||||||+.+++..... .+ ..++++.+.... .-...+ ...+...+ .+.
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~ 99 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSADDFAQ--AMVEHLKKGTINEFRNMY-KSV 99 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEHHHHHH--HHHHHHHHTCHHHHHHHH-HTC
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEHHHHHH--HHHHHHHcCcHHHHHHHh-cCC
Confidence 3444444322234567899999999999999998743111 11 223443221100 000000 01111111 236
Q ss_pred eEEEEeCCCCCCH--HhHHHHHHhhcC-CCCCCcEEEEecCCch---------HHhhccCCccccccccCCChHHHHHHH
Q 020066 201 LLIALDGLCDLND--DNLANLRLLVTN-MDLVGFYVLVTTQSRS---------VATMMKQTVPEAEHLIYFSESNSWSNL 268 (331)
Q Consensus 201 ~LlVLDdvw~~~~--~~~~~l~~~l~~-~~~~gs~IIvTTR~~~---------va~~~~~~~~~~~~l~~L~~~~s~~Lf 268 (331)
.+|+||++..... ...+.+...+.. .. .|..||+||.+.. +...+....++ .+++ +.++...++
T Consensus 100 ~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i--~l~~-~~~e~~~il 175 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRHPQKLDGVSDRLVSRFEGGILV--EIEL-DNKTRFKII 175 (324)
T ss_dssp SEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEE--ECCC-CHHHHHHHH
T ss_pred CEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCChHHHHHhhhHhhhcccCceEE--EeCC-CHHHHHHHH
Confidence 7999999976432 222333333321 12 4567888876432 12222233457 8999 999999999
Q ss_pred hhhC
Q 020066 269 NCEL 272 (331)
Q Consensus 269 ~~~a 272 (331)
...+
T Consensus 176 ~~~~ 179 (324)
T 1l8q_A 176 KEKL 179 (324)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 29
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=4.5e-05 Score=61.58 Aligned_cols=106 Identities=11% Similarity=0.063 Sum_probs=61.4
Q ss_pred cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhcccc-CCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCc
Q 020066 122 SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDDI-VSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSE 199 (331)
Q Consensus 122 ~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~k 199 (331)
...++.+.+..- ....+ |-|+|..|+|||++|+.+++...- ...| + +..+...+. ...... +... +
T Consensus 9 ~~~~~~~~~~~~a~~~~~-vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~-~~~~~~---~~~a---~ 76 (145)
T 3n70_A 9 WINQYRRRLQQLSETDIA-VWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA-PQLNDF---IALA---Q 76 (145)
T ss_dssp HHHHHHHHHHHHTTCCSC-EEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS-SCHHHH---HHHH---T
T ss_pred HHHHHHHHHHHHhCCCCC-EEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc-hhhhcH---HHHc---C
Confidence 445555555321 22333 569999999999999999874311 1122 2 443332221 111111 1111 2
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR 240 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~ 240 (331)
...|+||++..........+...+.... ...+||.||...
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~~-~~~~~I~~t~~~ 116 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQEH-RPFRLIGIGDTS 116 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSSS-CSSCEEEEESSC
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhcC-CCEEEEEECCcC
Confidence 3578999999877666677777765444 566888877643
No 30
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.95 E-value=6.3e-05 Score=68.71 Aligned_cols=142 Identities=6% Similarity=-0.100 Sum_probs=89.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc-ccCCCcCceEEEEeCCCCCccccHHHHHHHHHhc-cCCceeE
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD-DIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEI-PSSEMLL 202 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~-l~~kr~L 202 (331)
.|.+.+.. +..+..-++|..|+||||+|+.+.+.. ..........++..+......+....+...+... ..+++-+
T Consensus 8 ~L~~~i~~--~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kv 85 (305)
T 2gno_A 8 TLKRIIEK--SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKY 85 (305)
T ss_dssp HHHHHHHT--CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEE
T ss_pred HHHHHHHC--CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceE
Confidence 34444442 236788899999999999999987631 1111122234443322111112233344443332 2456778
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+|+|++........+.|+..+.... +.+.+|++|.+.. +...+.+. .+ ++.++++++....+.+..
T Consensus 86 viIdead~lt~~a~naLLk~LEep~-~~t~fIl~t~~~~kl~~tI~SR-~~--~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 86 VIVHDCERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYLLPTIKSR-VF--RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEETTGGGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGSCHHHHTT-SE--EEECCCCHHHHHHHHHHH
T ss_pred EEeccHHHhCHHHHHHHHHHHhCCC-CCeEEEEEECChHhChHHHHce-eE--eCCCCCHHHHHHHHHHHh
Confidence 9999999877778888888887655 6788877775543 33333334 78 999999999999998765
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.94 E-value=5.8e-05 Score=69.03 Aligned_cols=135 Identities=10% Similarity=0.087 Sum_probs=80.0
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCK 193 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~ 193 (331)
..++| ..+.+.+++.. .....++-+.|..|+|||++|+.+.+.. . ...+.++.+.. . .+.+...+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~-~~~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~----~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITSK-GKIPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-K----IDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHT-TCCCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-C----HHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHHc-CCCCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-C----HHHHHHHHH
Confidence 35668 55666666663 3334567778889999999999998743 1 11233433221 1 222322222
Q ss_pred h---c--cCCceeEEEEeCCCCCC-HHhHHHHHHhhcCCCCCCcEEEEecCCchH-Hh-hccCCccccccccCCChHHHH
Q 020066 194 E---I--PSSEMLLIALDGLCDLN-DDNLANLRLLVTNMDLVGFYVLVTTQSRSV-AT-MMKQTVPEAEHLIYFSESNSW 265 (331)
Q Consensus 194 ~---~--l~~kr~LlVLDdvw~~~-~~~~~~l~~~l~~~~~~gs~IIvTTR~~~v-a~-~~~~~~~~~~~l~~L~~~~s~ 265 (331)
+ . ..+++.+|++|++.... ....+.+...+.... .++++|+||....- .. .......+ .+++++.++-.
T Consensus 95 ~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l~~~l~sR~~~i--~~~~~~~~e~~ 171 (324)
T 3u61_B 95 NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNIDGIIKPLQSRCRVI--TFGQPTDEDKI 171 (324)
T ss_dssp HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGSCTTHHHHSEEE--ECCCCCHHHHH
T ss_pred HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCccccCHHHHhhCcEE--EeCCCCHHHHH
Confidence 2 1 23478899999998865 555666665554333 45688888875441 11 11122457 89999988743
No 32
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.93 E-value=0.00011 Score=67.76 Aligned_cols=131 Identities=10% Similarity=-0.021 Sum_probs=82.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccC--------------------CCcCceEEEEeCCCCCccccHHHHH---HHHH
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIV--------------------SRFPRHIWFSVGKILDLSTVMNVIT---IRCK 193 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~~~~~~l~---~~l~ 193 (331)
...+-++|..|+|||++|+.+.+.-... .|++ ..++......+ ....+.+. ..+.
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~-~~~i~~ir~l~~~~~ 101 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN-TLGVDAVREVTEKLN 101 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS-SBCHHHHHHHHHHTT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC-CCCHHHHHHHHHHHh
Confidence 4568899999999999999887642111 1122 23332211011 11223333 2222
Q ss_pred hc-cCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHHHHHhh
Q 020066 194 EI-PSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 194 ~~-l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~~Lf~~ 270 (331)
.. ..+++-++|+|++........+.|+..+.... .++.+|++|.+.+ +. +.......+ .+.+++.++....+..
T Consensus 102 ~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~-~~~~~Il~t~~~~~l~~ti~SRc~~~--~~~~~~~~~~~~~L~~ 178 (334)
T 1a5t_A 102 EHARLGGAKVVWVTDAALLTDAAANALLKTLEEPP-AETWFFLATREPERLLATLRSRCRLH--YLAPPPEQYAVTWLSR 178 (334)
T ss_dssp SCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGSCHHHHTTSEEE--ECCCCCHHHHHHHHHH
T ss_pred hccccCCcEEEEECchhhcCHHHHHHHHHHhcCCC-CCeEEEEEeCChHhCcHHHhhcceee--eCCCCCHHHHHHHHHH
Confidence 22 24567899999998877777788888876555 6778777776654 22 222334567 8999999999998887
Q ss_pred hC
Q 020066 271 EL 272 (331)
Q Consensus 271 ~a 272 (331)
..
T Consensus 179 ~~ 180 (334)
T 1a5t_A 179 EV 180 (334)
T ss_dssp HC
T ss_pred hc
Confidence 75
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.89 E-value=5.6e-05 Score=67.49 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=71.2
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
.....-+-|+|..|+|||+||+.+++.. ...| +.+..+...... .....+...+......+..+|+||++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~--~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~ 135 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEES--NFPF---IKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIER 135 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHH--TCSE---EEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhh
Confidence 3445678899999999999999998852 1111 222222111100 1112333334444456789999999754
Q ss_pred C----------CHHhHHHHHHhhcC---CCCCCcEEEEecCCchHHhh---ccC-CccccccccCCCh-HHHHHHHhh
Q 020066 211 L----------NDDNLANLRLLVTN---MDLVGFYVLVTTQSRSVATM---MKQ-TVPEAEHLIYFSE-SNSWSNLNC 270 (331)
Q Consensus 211 ~----------~~~~~~~l~~~l~~---~~~~gs~IIvTTR~~~va~~---~~~-~~~~~~~l~~L~~-~~s~~Lf~~ 270 (331)
. .....+.+...+.. .. .+..||.||...+.... .+. ...+ .+++++. ++-..++.+
T Consensus 136 l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~-~~~~ii~ttn~~~~l~~~~l~~rf~~~i--~~p~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 136 LLDYVPIGPRFSNLVLQALLVLLKKAPPQG-RKLLIIGTTSRKDVLQEMEMLNAFSTTI--HVPNIATGEQLLEALEL 210 (272)
T ss_dssp HTTCBTTTTBCCHHHHHHHHHHTTCCCSTT-CEEEEEEEESCHHHHHHTTCTTTSSEEE--ECCCEEEHHHHHHHHHH
T ss_pred hhccCCCChhHHHHHHHHHHHHhcCccCCC-CCEEEEEecCChhhcchhhhhcccceEE--cCCCccHHHHHHHHHHh
Confidence 1 12223334343332 22 34456777776654332 222 2456 8888988 676776665
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.85 E-value=0.00011 Score=67.07 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=83.0
Q ss_pred CCCCC---cHHHHHHHHhcC---CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRD---GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITI 190 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~ 190 (331)
..++| .+..+..++... ......+.|+|.+|+|||+||+.+++.. ... ..+++.+.. .....+..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~~---~~~~~~~~~----~~~~~l~~ 82 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GVN---LRVTSGPAI----EKPGDLAA 82 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH--TCC---EEEECTTTC----CSHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEecccc----CChHHHHH
Confidence 45778 445555555321 2234567799999999999999998742 111 223322211 12333444
Q ss_pred HHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCC-----------------CCCcEEEEecCCch-HHhh-ccCC-c
Q 020066 191 RCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMD-----------------LVGFYVLVTTQSRS-VATM-MKQT-V 250 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~-----------------~~gs~IIvTTR~~~-va~~-~~~~-~ 250 (331)
.+...+ .+..+|+||++..........+...+.... .++.++|.||.... +... .... .
T Consensus 83 ~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~ 161 (324)
T 1hqc_A 83 ILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 161 (324)
T ss_dssp HHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSC
T ss_pred HHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccE
Confidence 333322 356799999998876555666655443210 01345666665432 1111 1122 3
Q ss_pred cccccccCCChHHHHHHHhhhC
Q 020066 251 PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+ .+.+++.++...++...+
T Consensus 162 ~i--~l~~~~~~e~~~~l~~~~ 181 (324)
T 1hqc_A 162 VE--HLEYYTPEELAQGVMRDA 181 (324)
T ss_dssp EE--ECCCCCHHHHHHHHHHHH
T ss_pred EE--ecCCCCHHHHHHHHHHHH
Confidence 56 899999999999888765
No 35
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.84 E-value=1.7e-05 Score=64.73 Aligned_cols=101 Identities=14% Similarity=0.142 Sum_probs=56.0
Q ss_pred CcHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCce
Q 020066 121 GSVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEM 200 (331)
Q Consensus 121 G~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr 200 (331)
|.-...+..|..- .-..+.|+|..|+|||||++.+++..... .+ ..+++........ .+..+.
T Consensus 22 g~n~~~~~~l~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-------------~~~~~~ 84 (149)
T 2kjq_A 22 TENAELVYVLRHK--HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-------------DAAFEA 84 (149)
T ss_dssp CCTHHHHHHCCCC--CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-------------GGGGGC
T ss_pred CccHHHHHHHHhc--CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-------------HHHhCC
Confidence 5333444555432 44578899999999999999998743221 11 2455544332221 112346
Q ss_pred eEEEEeCCCCCCHHhHHHHHHhhcC-CCCCCc-EEEEecCC
Q 020066 201 LLIALDGLCDLNDDNLANLRLLVTN-MDLVGF-YVLVTTQS 239 (331)
Q Consensus 201 ~LlVLDdvw~~~~~~~~~l~~~l~~-~~~~gs-~IIvTTR~ 239 (331)
-+||||++.......-+.+...+.. .. .|. .||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~-~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRN-SGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHH-HTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHH-cCCcEEEEECCC
Confidence 7899999977543222223222211 11 233 48888874
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=5.9e-05 Score=69.68 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=81.6
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCc-eEEEEeCCCCCccccHHHHHHHH-
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPR-HIWFSVGKILDLSTVMNVITIRC- 192 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~l~~~l- 192 (331)
.++| -.+.|...+. .+.++-+.++|..|+||||+|+.+.+.-. ...+.. ..-++.+... ..+.+...+
T Consensus 26 ~~~g~~~~~~~L~~~i~--~g~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~----~~~~ir~~i~ 98 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVD--EGKLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDR----GIDVVRNQIK 98 (340)
T ss_dssp GCCSCHHHHHHHHHHHH--TTCCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCC----SHHHHHTHHH
T ss_pred HhcCcHHHHHHHHHHHh--cCCCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccc----cHHHHHHHHH
Confidence 3456 3444555554 23333378999999999999999887421 111211 1122222211 122222222
Q ss_pred --Hh---ccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCch-HH-hhccCCccccccccCCChHHHH
Q 020066 193 --KE---IPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRS-VA-TMMKQTVPEAEHLIYFSESNSW 265 (331)
Q Consensus 193 --~~---~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~-va-~~~~~~~~~~~~l~~L~~~~s~ 265 (331)
.. ...+.+-++|+|++........+.+...+.... ..+++|++|.... +. ........+ .+.+++.++..
T Consensus 99 ~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~~~~i~~~i~sR~~~~--~~~~l~~~~~~ 175 (340)
T 1sxj_C 99 DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKLTPALLSQCTRF--RFQPLPQEAIE 175 (340)
T ss_dssp HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHHHHTTSEEE--ECCCCCHHHHH
T ss_pred HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecCccccchhHHhhceeE--eccCCCHHHHH
Confidence 21 123457889999998766666677766665444 5677777775433 11 111223456 88899988888
Q ss_pred HHHhhhC
Q 020066 266 SNLNCEL 272 (331)
Q Consensus 266 ~Lf~~~a 272 (331)
..+...+
T Consensus 176 ~~l~~~~ 182 (340)
T 1sxj_C 176 RRIANVL 182 (340)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
No 37
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.82 E-value=1.7e-05 Score=66.29 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..+.|+|..|+|||||++.+++.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999874
No 38
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.82 E-value=1.9e-05 Score=65.46 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++| ..+.+.+.+.. ....-+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 35678 67777777763 33445679999999999999999874
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.80 E-value=0.00015 Score=67.29 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=44.0
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCC-c------------hH-HhhccCCccccccccCCChHHHH
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQS-R------------SV-ATMMKQTVPEAEHLIYFSESNSW 265 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~-~------------~v-a~~~~~~~~~~~~l~~L~~~~s~ 265 (331)
+.+|+||++........+.+...+.... .. .++++|.. . .+ .........+ .+.+++.++..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~-~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i--~~~~~~~~e~~ 265 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDM-AP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIV--STTPYSEKDTK 265 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTT-CC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEE--EECCCCHHHHH
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcC-CC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEE--EecCCCHHHHH
Confidence 4699999998877777777777665443 33 34444431 0 01 1111223346 89999999999
Q ss_pred HHHhhhC
Q 020066 266 SNLNCEL 272 (331)
Q Consensus 266 ~Lf~~~a 272 (331)
.++...+
T Consensus 266 ~il~~~~ 272 (368)
T 3uk6_A 266 QILRIRC 272 (368)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.78 E-value=0.00021 Score=65.65 Aligned_cols=143 Identities=13% Similarity=0.079 Sum_probs=84.5
Q ss_pred CCCCC---cHHHHHHHHhcC---CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHH
Q 020066 117 TELEG---SVDSVKNALLRD---GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITI 190 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~ 190 (331)
..++| .++.+..++... ......+-|+|.+|+|||+||+.+.+.. ...| +.++.+.. ........
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~--~~~~---~~~~~~~~----~~~~~~~~ 99 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM--SANI---KTTAAPMI----EKSGDLAA 99 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT--TCCE---EEEEGGGC----CSHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEecchhc----cchhHHHH
Confidence 45678 555666666432 2344557899999999999999998742 2222 22221111 12233333
Q ss_pred HHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCC-----------------CCcEEEEecCCchH-H-hhccCC-c
Q 020066 191 RCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDL-----------------VGFYVLVTTQSRSV-A-TMMKQT-V 250 (331)
Q Consensus 191 ~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~-----------------~gs~IIvTTR~~~v-a-~~~~~~-~ 250 (331)
.+.. ..+..+|+||++..........+...+..... ++..+|.+|..... . ...... .
T Consensus 100 ~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~ 177 (338)
T 3pfi_A 100 ILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGM 177 (338)
T ss_dssp HHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred HHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCE
Confidence 3333 24568999999998766666666665543210 12456666654331 1 111122 4
Q ss_pred cccccccCCChHHHHHHHhhhC
Q 020066 251 PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+ .+.+++.++...++.+.+
T Consensus 178 ~i--~l~~~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 178 QF--RLEFYKDSELALILQKAA 197 (338)
T ss_dssp EE--ECCCCCHHHHHHHHHHHH
T ss_pred Ee--eCCCcCHHHHHHHHHHHH
Confidence 57 899999999999988765
No 41
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.72 E-value=2.5e-05 Score=66.42 Aligned_cols=36 Identities=14% Similarity=0.052 Sum_probs=26.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV 175 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 175 (331)
..+.|+|.+|+|||+||+.+++... ......+|++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEh
Confidence 6778999999999999999988532 22234455543
No 42
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00027 Score=69.26 Aligned_cols=142 Identities=14% Similarity=0.134 Sum_probs=80.8
Q ss_pred CCCCC---cHHHHHHHHhcC---------------CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 117 TELEG---SVDSVKNALLRD---------------GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
..++| ..+.|.++|... .+..+.+-|+|.+|+||||||+.+++... + ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEeCCCc
Confidence 34667 677788877631 01346788999999999999999988531 1 1222322222
Q ss_pred CCccccHHHHHHHHHh------------------ccCCceeEEEEeCCCCCC---HHhHHHHHHhhcCCCCCCcEEEEec
Q 020066 179 LDLSTVMNVITIRCKE------------------IPSSEMLLIALDGLCDLN---DDNLANLRLLVTNMDLVGFYVLVTT 237 (331)
Q Consensus 179 ~~~~~~~~~l~~~l~~------------------~l~~kr~LlVLDdvw~~~---~~~~~~l~~~l~~~~~~gs~IIvTT 237 (331)
.. ...+...+.. ...+++.+|+||++.... ...+..+...+... +..||+++
T Consensus 114 ~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~---~~~iIli~ 186 (516)
T 1sxj_A 114 RS----KTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT---STPLILIC 186 (516)
T ss_dssp CC----HHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC---SSCEEEEE
T ss_pred ch----HHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc---CCCEEEEE
Confidence 11 1111111111 023568899999997542 22344555444332 23455555
Q ss_pred CCch---HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 238 QSRS---VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 238 R~~~---va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.... +.........+ .+.+++.++..+++...+
T Consensus 187 ~~~~~~~l~~l~~r~~~i--~f~~~~~~~~~~~L~~i~ 222 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDI--QFRRPDANSIKSRLMTIA 222 (516)
T ss_dssp SCTTSSTTGGGTTTSEEE--ECCCCCHHHHHHHHHHHH
T ss_pred cCCCCccchhhHhceEEE--EeCCCCHHHHHHHHHHHH
Confidence 4322 22222223457 899999999998887654
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.62 E-value=0.00057 Score=60.20 Aligned_cols=126 Identities=12% Similarity=0.133 Sum_probs=67.9
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC-----
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL----- 211 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~----- 211 (331)
-+.|+|..|+||||||+.+.+.. ...| +.++.+.-.+.. .....+...+.......+.++++|++...
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~ 121 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 121 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCS
T ss_pred eEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCC
Confidence 47799999999999999998743 2122 233222111111 22333344444444556789999998321
Q ss_pred -------C--HHhHHHHHHhhcC--CCCCCcEEEEecCCch-HHhhc-c--C-CccccccccCCChHHHHHHHhhhC
Q 020066 212 -------N--DDNLANLRLLVTN--MDLVGFYVLVTTQSRS-VATMM-K--Q-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -------~--~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~-va~~~-~--~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
. ......+...+.. .. .+..||.||...+ +.... . . ...+ .+...+.++-.+++..+.
T Consensus 122 ~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~~tn~~~~l~~~l~r~~rf~~~i--~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 122 AGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQV--VVGLPDVRGREQILKVHM 195 (257)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTCCSS-SCEEEEEEESCTTTSCGGGGSTTSSCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred CCcCCCchHHHHHHHHHHHHhhCcccC-CCEEEEEeeCCchhCCHHHcCCCcCCeEE--EeCCCCHHHHHHHHHHHH
Confidence 0 0122334333332 22 4556777776554 21111 1 1 2345 677778777777776653
No 44
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.58 E-value=0.00028 Score=64.71 Aligned_cols=129 Identities=14% Similarity=0.058 Sum_probs=70.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc-c-ccHHHHHHHHHhccCCceeEEEEeCCCCCC--
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL-S-TVMNVITIRCKEIPSSEMLLIALDGLCDLN-- 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~-~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-- 212 (331)
.+-+-++|.+|+|||+||+.+++.. ...| +.++.+.-... . .....+...+......++.+|+||++....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~--~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 125 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH--TCEE---EEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--CCCE---EEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhcc
Confidence 3567899999999999999998842 2222 22222111010 0 112222222233334567899999987421
Q ss_pred ---------HHhHHHHHHhhc---CCCCCCcEEEEecCCchHH-hh-c-cCCccccccccCCChHHHHHHHhhhCC
Q 020066 213 ---------DDNLANLRLLVT---NMDLVGFYVLVTTQSRSVA-TM-M-KQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 213 ---------~~~~~~l~~~l~---~~~~~gs~IIvTTR~~~va-~~-~-~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
......+...+. ... .+..||.||...... .. . .....+ .+...+.++-.++|..++-
T Consensus 126 ~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~v~vi~atn~~~~ld~al~~Rf~~~i--~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 126 RGEGESEASRRIKTELLVQMNGVGNDS-QGVLVLGATNIPWQLDSAIRRRFERRI--YIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp ------CCTHHHHHHHHHHHGGGGTSC-CCEEEEEEESCGGGSCHHHHHHCCEEE--ECCCCCHHHHHHHHHHHHT
T ss_pred CCCCcchHHHHHHHHHHHHhccccccC-CceEEEEecCChhhCCHHHHcccCeEE--EeCCCCHHHHHHHHHHHhc
Confidence 011334444433 233 456667677654321 00 0 112345 6888899999999988664
No 45
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.55 E-value=0.00057 Score=60.52 Aligned_cols=114 Identities=17% Similarity=0.067 Sum_probs=58.9
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHh
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKE 194 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~ 194 (331)
.++| ....+.+.+..-.....-+-|+|..|+|||+||+.+++...-. .. ..+.++.+... .+.+...+..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-~~-~~~~v~~~~~~-----~~~~~~~l~g 79 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-QG-PFISLNCAALN-----ENLLDSELFG 79 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-TS-CEEEEEGGGSC-----HHHHHHHHHC
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-CC-CeEEEecCCCC-----hhHHHHHhcC
Confidence 3566 4455555443211122345689999999999999998742111 11 12333332221 1111111111
Q ss_pred c---------------c-CCceeEEEEeCCCCCCHHhHHHHHHhhcCC-----------CCCCcEEEEecCC
Q 020066 195 I---------------P-SSEMLLIALDGLCDLNDDNLANLRLLVTNM-----------DLVGFYVLVTTQS 239 (331)
Q Consensus 195 ~---------------l-~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~~gs~IIvTTR~ 239 (331)
. + ....-+|+||++..........|...+..+ . .+.+||.||..
T Consensus 80 ~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~-~~~~iI~atn~ 150 (265)
T 2bjv_A 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQ-VNVRLVCATNA 150 (265)
T ss_dssp CC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEE-CCCEEEEEESS
T ss_pred CcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCccccc-CCeEEEEecCc
Confidence 0 0 012458999999887666666666555421 1 34678888865
No 46
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.54 E-value=0.00048 Score=71.57 Aligned_cols=146 Identities=15% Similarity=0.146 Sum_probs=73.8
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc---ccCCCc-Cc-eEEEEeCCCCC---ccccH-
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD---DIVSRF-PR-HIWFSVGKILD---LSTVM- 185 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~-~~wv~vs~~~~---~~~~~- 185 (331)
.++| +...+++.|... ..+-+.++|.+|+|||+||+.+.+.- .+.... +. .+++..+.-.. .....
T Consensus 171 ~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~ 248 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFE 248 (854)
T ss_dssp CCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHH
T ss_pred ccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHH
Confidence 4668 777888877642 33345789999999999999998742 111111 11 22333222211 11111
Q ss_pred HHHHHHHHhccC-CceeEEEEeCCCCCC--------HHhHHHHHHhhcCCCCCCcEEEEecCCchHH------hhccCCc
Q 020066 186 NVITIRCKEIPS-SEMLLIALDGLCDLN--------DDNLANLRLLVTNMDLVGFYVLVTTQSRSVA------TMMKQTV 250 (331)
Q Consensus 186 ~~l~~~l~~~l~-~kr~LlVLDdvw~~~--------~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va------~~~~~~~ 250 (331)
..+...+..... +++.+|++|++.... .+..+.+...+..+ +..+|.+|...... .......
T Consensus 249 ~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~---~i~~I~at~~~~~~~~~~d~aL~rRf~ 325 (854)
T 1qvr_A 249 ERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG---ELRLIGATTLDEYREIEKDPALERRFQ 325 (854)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT---CCCEEEEECHHHHHHHTTCTTTCSCCC
T ss_pred HHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC---CeEEEEecCchHHhhhccCHHHHhCCc
Confidence 222222222222 468999999997632 11122344444322 34556555433321 1112234
Q ss_pred cccccccCCChHHHHHHHhh
Q 020066 251 PEAEHLIYFSESNSWSNLNC 270 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~ 270 (331)
.+ .+.+++.++...++..
T Consensus 326 ~i--~l~~p~~~e~~~iL~~ 343 (854)
T 1qvr_A 326 PV--YVDEPTVEETISILRG 343 (854)
T ss_dssp CE--EECCCCHHHHHHHHHH
T ss_pred eE--EeCCCCHHHHHHHHHh
Confidence 57 8999999999998864
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.51 E-value=0.00015 Score=58.25 Aligned_cols=101 Identities=7% Similarity=0.196 Sum_probs=56.4
Q ss_pred cHHHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCce
Q 020066 122 SVDSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEM 200 (331)
Q Consensus 122 ~~~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr 200 (331)
...++.+.+..- ..... |-|+|..|+|||++|+.+++... -++.+.-. +.. ......+..... .
T Consensus 12 ~~~~l~~~~~~~~~~~~~-vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~~---~~~~~~~~~~a~--~ 76 (143)
T 3co5_A 12 AIQEMNREVEAAAKRTSP-VFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EYL---IDMPMELLQKAE--G 76 (143)
T ss_dssp HHHHHHHHHHHHHTCSSC-EEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-THH---HHCHHHHHHHTT--T
T ss_pred HHHHHHHHHHHHhCCCCc-EEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hCC---hHhhhhHHHhCC--C
Confidence 444555544321 22333 55899999999999999987422 22222111 110 111112222222 3
Q ss_pred eEEEEeCCCCCCHHhHHHHHHhhcCC-CCCCcEEEEecC
Q 020066 201 LLIALDGLCDLNDDNLANLRLLVTNM-DLVGFYVLVTTQ 238 (331)
Q Consensus 201 ~LlVLDdvw~~~~~~~~~l~~~l~~~-~~~gs~IIvTTR 238 (331)
-.|+||++..........+...+... . .+.+||.||.
T Consensus 77 ~~l~lDei~~l~~~~q~~Ll~~l~~~~~-~~~~iI~~tn 114 (143)
T 3co5_A 77 GVLYVGDIAQYSRNIQTGITFIIGKAER-CRVRVIASCS 114 (143)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHHHTT-TTCEEEEEEE
T ss_pred CeEEEeChHHCCHHHHHHHHHHHHhCCC-CCEEEEEecC
Confidence 57899999987766666666555432 2 4568888875
No 48
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.50 E-value=0.00019 Score=69.82 Aligned_cols=128 Identities=16% Similarity=0.104 Sum_probs=71.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--cccHHHHHHHHHhccCCceeEEEEeCCCC----
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL--STVMNVITIRCKEIPSSEMLLIALDGLCD---- 210 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~---- 210 (331)
.+-+-|+|.+|+|||+||+.+.+.. ...| +.++.+.-.+. ......+...+.....+++.+|+||++..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~--~~~f---v~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~ 312 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC--SSEE---EEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBC
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh--CCCE---EEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccc
Confidence 3457799999999999999998742 2222 22321111110 01222333444444556788999999831
Q ss_pred ----CC---HHhHHHHHHhhcC--CCCCCcEEEEecCCchH-Hhhc----cCCccccccccCCChHHHHHHHhhhC
Q 020066 211 ----LN---DDNLANLRLLVTN--MDLVGFYVLVTTQSRSV-ATMM----KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 211 ----~~---~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~v-a~~~----~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.. ......|...+.. .. .+..||.||...+- -..+ .....+ .+...+.++-.++|..++
T Consensus 313 ~~~~~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~al~r~gRf~~~i--~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 313 REKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREV--DIGIPDATGRLEILQIHT 385 (489)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCGGGGSTTSSCEEE--ECCCCCHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCHHHhCCCcCceEE--EeCCCCHHHHHHHHHHHH
Confidence 01 1122334444332 22 35566667765532 1111 122356 789999999999998775
No 49
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.49 E-value=0.00079 Score=61.76 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=70.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
.+-+-++|.+|+|||+||+.+++... ...| +.++.+.-.+.. .....+...+......++.+|+||++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~ 120 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccc
Confidence 35678999999999999999998421 1111 223332222211 22233333333333456899999999752
Q ss_pred ----CHH----hHHHHHHhhcC---CCCCCcEEEEecCCchHH-h-hc-cCCccccccccCCChHHHHHHHhhhC
Q 020066 212 ----NDD----NLANLRLLVTN---MDLVGFYVLVTTQSRSVA-T-MM-KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ----~~~----~~~~l~~~l~~---~~~~gs~IIvTTR~~~va-~-~~-~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... ....+...+.. .. .+..||.||...... . .. .....+ .+...+.++-..+|..+.
T Consensus 121 ~~~~~~~~~~~~~~~ll~~ld~~~~~~-~~v~vI~atn~~~~ld~al~rRf~~~i--~i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 121 RSENESEAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDSAIRRRFEKRI--YIPLPEPHARAAMFKLHL 192 (322)
T ss_dssp SSSCCTTHHHHHHHHHHHHHHCSSSCC-TTEEEEEEESCTTTSCHHHHHTCCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhcccccC-CCEEEEEecCCcccCCHHHHhhcCeEE--EeCCcCHHHHHHHHHHHH
Confidence 011 12233333332 22 455666666544311 1 11 112345 688888888888888765
No 50
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.001 Score=60.89 Aligned_cols=135 Identities=9% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhccccCC---CcC--ceEEEEeCCCCCcc------------------ccHHHHHH
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVS---RFP--RHIWFSVGKILDLS------------------TVMNVITI 190 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~--~~~wv~vs~~~~~~------------------~~~~~l~~ 190 (331)
....+.+-|+|.+|+|||++++.|.+.-.-.. ... ..++++-....+.. ...+.+..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 45566778999999999999999987542111 111 12334322211111 12333333
Q ss_pred HHHhc--cCCceeEEEEeCCCCCC-HHhHHHHHHhhcCCCCCCcEEEEecCCchH-----H----hhccCCccccccccC
Q 020066 191 RCKEI--PSSEMLLIALDGLCDLN-DDNLANLRLLVTNMDLVGFYVLVTTQSRSV-----A----TMMKQTVPEAEHLIY 258 (331)
Q Consensus 191 ~l~~~--l~~kr~LlVLDdvw~~~-~~~~~~l~~~l~~~~~~gs~IIvTTR~~~v-----a----~~~~~~~~~~~~l~~ 258 (331)
.+... -.+++++++||.+..-. ++..-.+........ ....||.++...+. . ..++ ...+ .+.|
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~-s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i--~F~p 197 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKN-SKLSIICVGGHNVTIREQINIMPSLKAH-FTEI--KLNK 197 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSS-CCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEE--ECCC
T ss_pred HHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccC-CcEEEEEEecCcccchhhcchhhhccCC-ceEE--EeCC
Confidence 33332 24678999999987642 222222222111111 12234444433221 1 1221 1357 8999
Q ss_pred CChHHHHHHHhhhC
Q 020066 259 FSESNSWSNLNCEL 272 (331)
Q Consensus 259 L~~~~s~~Lf~~~a 272 (331)
.+.++-.+++.+++
T Consensus 198 Yt~~el~~Il~~Rl 211 (318)
T 3te6_A 198 VDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999998875
No 51
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.00033 Score=63.59 Aligned_cols=129 Identities=11% Similarity=0.128 Sum_probs=70.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--cccHHHHHHHHHhccCCceeEEEEeCCCCCC-
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL--STVMNVITIRCKEIPSSEMLLIALDGLCDLN- 212 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~- 212 (331)
..+.+.++|..|+|||+||+.+++.. ...| +.++.+.-.+. ......+...+.......+.+|+||++....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~--~~~~---i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~ 122 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC--QANF---ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT--TCEE---EEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh--CCCE---EEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhh
Confidence 34567899999999999999999843 2222 12211000000 0111112222333334567999999986410
Q ss_pred -------------HHhHHHHHHhhcC--CCCCCcEEEEecCCchHH-h-hcc--CC-ccccccccCCChHHHHHHHhhhC
Q 020066 213 -------------DDNLANLRLLVTN--MDLVGFYVLVTTQSRSVA-T-MMK--QT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 -------------~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va-~-~~~--~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
......+...+.. .. .+..||.||...+.. . ... .. ..+ .+.+.+.++-.++|..+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-~~v~vi~atn~~~~ld~al~r~gRf~~~i--~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 123 ARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNRPDIIDPAILRPGRLDQLI--YIPLPDEKSRVAILKANL 199 (301)
T ss_dssp HHTTTTCCSSCSCCHHHHHHHHHHHSSCTT-SSEEEEEEESCGGGSCGGGGSTTSSCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred ccCCCcCCcchHHHHHHHHHHHHhhcccCC-CCEEEEEecCCccccChHHhcCCccceEE--ecCCcCHHHHHHHHHHHH
Confidence 0113444444432 22 456777788665422 1 112 22 356 788889988888887654
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.46 E-value=0.00072 Score=62.92 Aligned_cols=128 Identities=10% Similarity=0.015 Sum_probs=68.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-c-cHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-T-VMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~-~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
.+-+.|+|..|+|||+||+.+++.. ... .+.++.+.-.... . ....+...+......++.+|+||++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~ 191 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS--GAT---FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ 191 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT--TCE---EEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCe---EEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhcc
Confidence 4567899999999999999998742 211 2334433222211 1 1122222222223356789999998421
Q ss_pred --------CHHhHHHHHHhhcC----CCCCCcEEEEecCCch-HHhh-ccC-CccccccccCCChHHHHHHHhhhC
Q 020066 212 --------NDDNLANLRLLVTN----MDLVGFYVLVTTQSRS-VATM-MKQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 --------~~~~~~~l~~~l~~----~~~~gs~IIvTTR~~~-va~~-~~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.......+...+.. .. .+..||.||.... +... ... ...+ .+...+.++-..++...+
T Consensus 192 ~~~~~~~~~~~~~~~lL~~l~~~~~~~~-~~v~vI~atn~~~~l~~~l~~Rf~~~i--~i~~p~~~~r~~il~~~~ 264 (357)
T 3d8b_A 192 RGDGEHESSRRIKTEFLVQLDGATTSSE-DRILVVGATNRPQEIDEAARRRLVKRL--YIPLPEASARKQIVINLM 264 (357)
T ss_dssp ------CHHHHHHHHHHHHHHC----CC-CCEEEEEEESCGGGBCHHHHTTCCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHhcccccCC-CCEEEEEecCChhhCCHHHHhhCceEE--EeCCcCHHHHHHHHHHHH
Confidence 01123344444432 12 3455666775432 1111 111 2345 688888888888887654
No 53
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.39 E-value=0.00097 Score=64.54 Aligned_cols=126 Identities=14% Similarity=0.130 Sum_probs=70.6
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCC----
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLN---- 212 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~---- 212 (331)
-+.++|.+|+|||+||+.+.+... ..| +.++.+...... .....+...+.......+++|+||++....
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~--~~f---~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEAN--VPF---FHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--CCE---EEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC--CCe---eeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcc
Confidence 367999999999999999988432 122 233333222211 122223333444445678999999985421
Q ss_pred ----------HHhHHHHHHhhcC--CCCCCcEEEEecCCchHHh--hcc--C-CccccccccCCChHHHHHHHhhhC
Q 020066 213 ----------DDNLANLRLLVTN--MDLVGFYVLVTTQSRSVAT--MMK--Q-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ----------~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~--~~~--~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
......+...+.. .. .+..||.||...+... ... . ...+ .+.+.+.++-.++|+.++
T Consensus 126 ~~~~g~~~~~~~~l~~LL~~ld~~~~~-~~viVIaaTn~~~~Ld~allR~gRFd~~i--~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 126 AGLGGGHDEREQTLNQLLVEMDGFDSK-EGIIVMAATNRPDILDPALLRPGRFDKKI--VVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp -------CHHHHHHHHHHHHHHHSCGG-GTEEEEEEESCGGGSCGGGGSTTSSCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred cccCcCcHHHHHHHHHHHHHHhccCCC-CCEEEEEecCChhhhchhhcccCcceeEe--ecCCCCHHHHHHHHHHHH
Confidence 0123344443321 22 4567777887665322 111 2 2256 677778777777776544
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.39 E-value=0.00072 Score=69.25 Aligned_cols=148 Identities=11% Similarity=0.098 Sum_probs=81.8
Q ss_pred CCCC---cHHHHHHHHhcC-------CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHH
Q 020066 118 ELEG---SVDSVKNALLRD-------GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~ 186 (331)
.++| .++.+.+.+... ......+-++|.+|+|||+||+.+.+... ..-...+.++.+.-.+.. ....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~~~~ 569 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHSTSGG 569 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCCC--
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccccccc
Confidence 4567 444555555421 12233688999999999999999987421 111122334433222211 1111
Q ss_pred HHHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCC-----ch----HHhhc-
Q 020066 187 VITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQS-----RS----VATMM- 246 (331)
Q Consensus 187 ~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~-----~~----va~~~- 246 (331)
.+...+.. ....+|+||++...+.+..+.|...+..+. ..+++||.||.. .. +...+
T Consensus 570 ~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~ 646 (758)
T 3pxi_A 570 QLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFR 646 (758)
T ss_dssp -CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSC
T ss_pred hhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCC
Confidence 22222222 234589999999887777777776665321 035688888873 11 11112
Q ss_pred ----cCC-ccccccccCCChHHHHHHHhhhC
Q 020066 247 ----KQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 ----~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... .++ .+.+|+.++-..++....
T Consensus 647 p~l~~Rl~~~i--~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 647 PEFINRIDEII--VFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHHTTSSEEE--ECC--CHHHHHHHHHHHH
T ss_pred HHHHhhCCeEE--ecCCCCHHHHHHHHHHHH
Confidence 122 356 899999999888887654
No 55
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.38 E-value=0.0026 Score=57.02 Aligned_cols=127 Identities=13% Similarity=-0.002 Sum_probs=65.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHHHHH-HHHHhccCCceeEEEEeCCCCCC--
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMNVIT-IRCKEIPSSEMLLIALDGLCDLN-- 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~l~-~~l~~~l~~kr~LlVLDdvw~~~-- 212 (331)
.+-+.|+|.+|+||||||+.+++.. ... .+.++.+.-.... ....... ..+......++.+|+||++....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 4567899999999999999998742 111 1233333222211 1222222 22222334567899999985421
Q ss_pred ---------HHhHHHHHHhh---cCCC-CCCcEEEEecCCch-----HHhhccCCccccccccCCChHHHHHHHhhhC
Q 020066 213 ---------DDNLANLRLLV---TNMD-LVGFYVLVTTQSRS-----VATMMKQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ---------~~~~~~l~~~l---~~~~-~~gs~IIvTTR~~~-----va~~~~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
......+...+ +... ..+..||.||...+ +...+ ...+ .+...+.++-..++...+
T Consensus 129 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~--~~~i--~~~~p~~~~r~~il~~~~ 202 (297)
T 3b9p_A 129 RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF--TKRV--YVSLPDEQTRELLLNRLL 202 (297)
T ss_dssp C-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC--CEEE--ECCCCCHHHHHHHHHHHH
T ss_pred cccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC--CeEE--EeCCcCHHHHHHHHHHHH
Confidence 11112233222 2111 02455677776543 22222 2345 577777777777776654
No 56
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.38 E-value=0.00046 Score=64.24 Aligned_cols=128 Identities=14% Similarity=0.073 Sum_probs=67.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--cccHHHHHHHHHhccCCceeEEEEeCCCCCCH--
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL--STVMNVITIRCKEIPSSEMLLIALDGLCDLND-- 213 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~-- 213 (331)
+-+-++|..|+|||+||+.+++.. ...| +.+..+.-... ......+...+......++.+|+||++.....
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 159 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTR 159 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccC
Confidence 347789999999999999999853 2111 22221110000 01122222222223345689999999875311
Q ss_pred ---------HhHHHHHHhhc---CCCCCCcEEEEecCCchHH-h-hc-cCCccccccccCCChHHHHHHHhhhCC
Q 020066 214 ---------DNLANLRLLVT---NMDLVGFYVLVTTQSRSVA-T-MM-KQTVPEAEHLIYFSESNSWSNLNCELP 273 (331)
Q Consensus 214 ---------~~~~~l~~~l~---~~~~~gs~IIvTTR~~~va-~-~~-~~~~~~~~~l~~L~~~~s~~Lf~~~af 273 (331)
.....+...+. ... .+..||.||...+.. . .. .....+ .+.+.+.++-..+|..+.-
T Consensus 160 ~~~~~~~~~~~~~~ll~~l~~~~~~~-~~v~vI~atn~~~~ld~al~rRf~~~i--~i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 160 GEGESEASRRIKTELLVQMNGVGNDS-QGVLVLGATNIPWQLDSAIRRRFERRI--YIPLPDLAARTTMFEINVG 231 (355)
T ss_dssp ----CTHHHHHHHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHHTCCEEE--ECCCCCHHHHHHHHHHHHT
T ss_pred CCCcchHHHHHHHHHHHHhhcccccC-CCeEEEeecCCcccCCHHHHcccCEEE--EeCCcCHHHHHHHHHHHHh
Confidence 01233333332 123 455667677654311 1 11 122345 6888899988888887653
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.0018 Score=66.32 Aligned_cols=148 Identities=16% Similarity=0.124 Sum_probs=80.3
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc---cCCC-cCceEEE-EeCCCC---CccccHH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD---IVSR-FPRHIWF-SVGKIL---DLSTVMN 186 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv-~vs~~~---~~~~~~~ 186 (331)
.++| +...+++.|... ...-+.++|.+|+|||++|+.+.+.-. +... +.+.+|. ..+.-. ......+
T Consensus 187 ~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 4668 677888877642 334456899999999999999886421 1111 2333332 111111 1112222
Q ss_pred -HHHHHHHhccCCceeEEEEeCCCCC--------CHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhhc-------cCCc
Q 020066 187 -VITIRCKEIPSSEMLLIALDGLCDL--------NDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATMM-------KQTV 250 (331)
Q Consensus 187 -~l~~~l~~~l~~kr~LlVLDdvw~~--------~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~~-------~~~~ 250 (331)
.+...+......++.+|++|++... ...+...+..++... .+..+|.+|......... ....
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 2333333333446799999999753 122222233333222 345667666544432111 1223
Q ss_pred cccccccCCChHHHHHHHhhh
Q 020066 251 PEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 251 ~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
.+ .+.+.+.++..+++...
T Consensus 343 ~i--~v~~p~~~e~~~il~~l 361 (758)
T 1r6b_X 343 KI--DITEPSIEETVQIINGL 361 (758)
T ss_dssp EE--ECCCCCHHHHHHHHHHH
T ss_pred EE--EcCCCCHHHHHHHHHHH
Confidence 56 79999999988888754
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.26 E-value=0.00057 Score=66.08 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=73.1
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc---cCCCc-CceE-EEEeCCCCCc--cccHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD---IVSRF-PRHI-WFSVGKILDL--STVMN 186 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~-wv~vs~~~~~--~~~~~ 186 (331)
..++| +++.+++.|... ...-+-++|.+|+|||+||+.+++.-. +...+ +..+ .++.+..+.. .....
T Consensus 180 d~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~ 257 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHH
Confidence 35678 777888887642 233346899999999999999987421 11111 1111 1222211110 01222
Q ss_pred HHHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh-------hccCCccccccccCC
Q 020066 187 VITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT-------MMKQTVPEAEHLIYF 259 (331)
Q Consensus 187 ~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~-------~~~~~~~~~~~l~~L 259 (331)
.+...+ -..++.+|++| -. .+..+.++..+.. ...++|.+|....... .......+ .+.+.
T Consensus 258 ~~~~~~---~~~~~~iLfiD--~~--~~a~~~L~~~L~~---g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i--~v~~p 325 (468)
T 3pxg_A 258 KVMDEI---RQAGNIILFID--AA--IDASNILKPSLAR---GELQCIGATTLDEYRKYIEKDAALERRFQPI--QVDQP 325 (468)
T ss_dssp HHHHHH---HTCCCCEEEEC--C----------CCCTTS---SSCEEEEECCTTTTHHHHTTCSHHHHSEEEE--ECCCC
T ss_pred HHHHHH---HhcCCeEEEEe--Cc--hhHHHHHHHhhcC---CCEEEEecCCHHHHHHHhhcCHHHHHhCccc--eeCCC
Confidence 333333 23567899999 11 2223334444432 2356666665443111 11123457 89999
Q ss_pred ChHHHHHHHhhhC
Q 020066 260 SESNSWSNLNCEL 272 (331)
Q Consensus 260 ~~~~s~~Lf~~~a 272 (331)
+.++...++....
T Consensus 326 ~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 326 SVDESIQILQGLR 338 (468)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
No 59
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.0025 Score=57.02 Aligned_cols=126 Identities=11% Similarity=0.113 Sum_probs=70.0
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCC-----
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLN----- 212 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~----- 212 (331)
+.++|..|+|||||++.+...... ..+++..+.-.+.. .....+....+..-...++++++|++...-
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~ 121 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD 121 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCC
Confidence 889999999999999999874221 23344333222211 111222222222223457899999996521
Q ss_pred ------HHhHHHHHHhhcCCCC-CCcEEEEecCCchHHhh--c--cC-CccccccccCCChHHHHHHHhhhC
Q 020066 213 ------DDNLANLRLLVTNMDL-VGFYVLVTTQSRSVATM--M--KQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ------~~~~~~l~~~l~~~~~-~gs~IIvTTR~~~va~~--~--~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
......+...+..+.. ...-++.+|...++... . +. ...+ .+...+.++-.++|+...
T Consensus 122 ~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i--~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 122 RETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTL--FVGLPPPADRLAILKTIT 191 (274)
T ss_dssp -----CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEE--ECCSCCHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEE--EeCCcCHHHHHHHHHHHH
Confidence 0112334444443321 34456667776664311 1 12 2345 688888888888888754
No 60
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.25 E-value=0.0014 Score=62.81 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=67.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC--CCcc-----ccHHHHHHHHHhccCCceeEEEEeCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI--LDLS-----TVMNVITIRCKEIPSSEMLLIALDGLC 209 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~-----~~~~~l~~~l~~~l~~kr~LlVLDdvw 209 (331)
.+-+-++|.+|+|||+||+.+++... . .-++.++.. .+.. .....+. ......++.+|+||++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~-~-----~~~~~v~~~~l~~~~~g~~~~~~~~~f---~~a~~~~~~vl~iDEid 237 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSSDLVSKWLGESEKLVKNLF---QLARENKPSIIFIDEID 237 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCC-S-----SEEEEECCC---------CCCTHHHHH---HHHHHSCSEEEEESCTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcC-C-----CCEEEEeHHHHHhhhcchHHHHHHHHH---HHHHHcCCeEEEEechH
Confidence 35678999999999999999998431 1 122222211 1100 1122222 22223467899999997
Q ss_pred CCC-------HH----hHHHHHHhhcC---CCCCCcEEEEecCCchHH--hhccCC-ccccccccCCChHHHHHHHhhhC
Q 020066 210 DLN-------DD----NLANLRLLVTN---MDLVGFYVLVTTQSRSVA--TMMKQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 210 ~~~-------~~----~~~~l~~~l~~---~~~~gs~IIvTTR~~~va--~~~~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... .. ....+...+.. .. .+..||.||...... ...... ..+ .+...+.++-..+|..+.
T Consensus 238 ~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~-~~v~vI~atn~~~~ld~al~rRf~~~i--~i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 238 SLCGSRSENESEAARRIKTEFLVQMQGVGVDN-DGILVLGATNIPWVLDSAIRRRFEKRI--YIPLPEAHARAAMFRLHL 314 (444)
T ss_dssp TTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCC-SSCEEEEEESCGGGSCHHHHTTCCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred hhccCCCCccccHHHHHHHHHHHHHhCcccCC-CCEEEEecCCCccccCHHHHhhcceEE--EeCCcCHHHHHHHHHHHH
Confidence 531 11 12233333322 23 456677777654321 111122 345 688888888888888765
No 61
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.24 E-value=0.0036 Score=56.87 Aligned_cols=142 Identities=12% Similarity=0.091 Sum_probs=73.3
Q ss_pred CCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccc-cCCCcCceEEEEeCCCCCccccHHHHHHHHHh
Q 020066 119 LEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDD-IVSRFPRHIWFSVGKILDLSTVMNVITIRCKE 194 (331)
Q Consensus 119 ~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~ 194 (331)
++| ...++.+.+..-.....-|-|+|..|+|||++|+.+++... ....| +.++.+.... ..+...+..
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~---v~v~~~~~~~-----~l~~~~lfg 75 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPL---VTLNCAALNE-----SLLESELFG 75 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC---CEEECSSCCH-----HHHHHHHTC
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCe---EEEeCCCCCh-----HHHHHHhcC
Confidence 456 45555555543212223456899999999999999987421 11222 2232222111 111111211
Q ss_pred ccC----------------CceeEEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCCch---HHh-
Q 020066 195 IPS----------------SEMLLIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQSRS---VAT- 244 (331)
Q Consensus 195 ~l~----------------~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~~~---va~- 244 (331)
..+ ...-.|+||++..........|...+.... ....+||.||...- +..
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred ccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 100 012479999999877666666666654321 02467888876541 111
Q ss_pred hccC-------CccccccccCCC--hHHHHHHHhh
Q 020066 245 MMKQ-------TVPEAEHLIYFS--ESNSWSNLNC 270 (331)
Q Consensus 245 ~~~~-------~~~~~~~l~~L~--~~~s~~Lf~~ 270 (331)
.+.. ...+ .+.||. .+|...|+..
T Consensus 156 ~fr~~L~~Rl~~~~i--~lPpL~eR~edi~~l~~~ 188 (304)
T 1ojl_A 156 RFRQDLYYRLNVVAI--EMPSLRQRREDIPLLADH 188 (304)
T ss_dssp SSCHHHHHHHSSEEE--ECCCSGGGGGGHHHHHHH
T ss_pred CcHHHHHhhcCeeEE--eccCHHHhHhhHHHHHHH
Confidence 1110 1235 688888 4665555543
No 62
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.24 E-value=0.0027 Score=59.61 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=74.8
Q ss_pred CCCCC---cHHHHHHHHhcC----------CCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-
Q 020066 117 TELEG---SVDSVKNALLRD----------GSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS- 182 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~- 182 (331)
..++| .++.|.+.+... ....+-+-|+|..|+|||+||+.+.+.. ... .+.++.+.-....
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~~---~~~v~~~~l~~~~~ 189 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NAT---FFNISAASLTSKYV 189 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cCc---EEEeeHHHhhcccc
Confidence 35678 555565555211 1223567899999999999999998742 111 1222222211111
Q ss_pred -ccHHHHHHHHHhccCCceeEEEEeCCCCC-----------CHHhHHHHHHhhc---C-CCCCCcEEEEecCCchHH-h-
Q 020066 183 -TVMNVITIRCKEIPSSEMLLIALDGLCDL-----------NDDNLANLRLLVT---N-MDLVGFYVLVTTQSRSVA-T- 244 (331)
Q Consensus 183 -~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-----------~~~~~~~l~~~l~---~-~~~~gs~IIvTTR~~~va-~- 244 (331)
.....+...+.......+.+|+||++... .......+...+. . .. ....||.||....-. .
T Consensus 190 g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~v~vI~atn~~~~l~~~ 268 (389)
T 3vfd_A 190 GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD-DRVLVMGATNRPQELDEA 268 (389)
T ss_dssp --CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------CEEEEEEESCGGGCCHH
T ss_pred chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC-CCEEEEEecCCchhcCHH
Confidence 12222222222222345689999999642 0111222332222 1 12 334566666543311 1
Q ss_pred hccCC-ccccccccCCChHHHHHHHhhhC
Q 020066 245 MMKQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 245 ~~~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
..... ..+ .+...+.++-..++...+
T Consensus 269 l~~R~~~~i--~i~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 269 VLRRFIKRV--YVSLPNEETRLLLLKNLL 295 (389)
T ss_dssp HHTTCCEEE--ECCCCCHHHHHHHHHHHH
T ss_pred HHcCcceEE--EcCCcCHHHHHHHHHHHH
Confidence 11122 345 688889999999988765
No 63
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0022 Score=60.55 Aligned_cols=128 Identities=12% Similarity=0.045 Sum_probs=73.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCC--
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLN-- 212 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~-- 212 (331)
.+=+-++|.+|+|||.||+++.+.. .-+| +.+..+.-.+.. .....+...+...-...+++|++|++...-
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~ 256 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT--DCKF---IRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST 256 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH--TCEE---EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTS
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh--CCCc---eEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccC
Confidence 4556789999999999999999843 2222 234433333222 233333333333445678999999987521
Q ss_pred ------H------HhHHHHHHhhcC--CCCCCcEEEEecCCchHH---h-hccC-CccccccccCCChHHHHHHHhhhC
Q 020066 213 ------D------DNLANLRLLVTN--MDLVGFYVLVTTQSRSVA---T-MMKQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ------~------~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va---~-~~~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
. .....++..+.. .. .+-.||.||...+.. - .-|. ...+ .+...+.++-.++|+.+.
T Consensus 257 R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaATNrpd~LDpAllRpGRfD~~I--~i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 257 RVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMATNRLDILDPALLRPGRIDRKI--EFPPPSVAARAEILRIHS 332 (405)
T ss_dssp CSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEEESCSSSSCHHHHSTTSSCCEE--ECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEeccCChhhCCHhHcCCCcCceEE--EcCCcCHHHHHHHHHHHh
Confidence 0 012334444432 22 455677788665532 1 1122 3356 688888888888887653
No 64
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.22 E-value=0.0041 Score=59.43 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=74.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
..+=|-++|.+|+|||+||+.+.+... -+| +.+..+.-.+.. .....+...+...-...+++|++|++...
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~--~~~---~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~ 288 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIG--ANF---IFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGG 288 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT--CEE---EEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeeccccccc
Confidence 345677899999999999999998532 222 234444333322 22233333333334567999999999742
Q ss_pred ---------C---HHhHHHHHHhhcC--CCCCCcEEEEecCCchHHh--hccC---CccccccccCCChHHHHHHHhhhC
Q 020066 212 ---------N---DDNLANLRLLVTN--MDLVGFYVLVTTQSRSVAT--MMKQ---TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ---------~---~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~--~~~~---~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ ......++..+.. +. .+..||.||...+... ...+ ...+ .+...+.+.-.++|+.+.
T Consensus 289 ~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~vivI~ATNrp~~LDpAllRpGRfD~~I--~i~lPd~~~R~~Il~~~~ 365 (437)
T 4b4t_L 289 RRFSEGTSADREIQRTLMELLTQMDGFDNL-GQTKIIMATNRPDTLDPALLRPGRLDRKV--EIPLPNEAGRLEIFKIHT 365 (437)
T ss_dssp CCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-TSSEEEEEESSTTSSCTTTTSTTSEEEEE--CCCCCCHHHHHHHHHHHH
T ss_pred ccccCCCCcchHHHHHHHHHHHHhhcccCC-CCeEEEEecCCchhhCHHHhCCCccceee--ecCCcCHHHHHHHHHHHh
Confidence 0 0123344554433 22 4567888887655321 1112 2345 677778777778877543
No 65
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.21 E-value=0.00053 Score=62.05 Aligned_cols=70 Identities=19% Similarity=0.165 Sum_probs=39.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhc----cCCceeEEEEeCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEI----PSSEMLLIALDGLC 209 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~----l~~kr~LlVLDdvw 209 (331)
..+.+.++|.+|+|||+||+.+++.. ..+| +.++.+.-.+.. .....+...+... -..++.+|+||++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l--~~~~---i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD 109 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM--GINP---IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLD 109 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH--TCCC---EEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh--CCCE---EEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 34577889999999999999999853 2222 223221111100 1112222222222 25678999999995
Q ss_pred C
Q 020066 210 D 210 (331)
Q Consensus 210 ~ 210 (331)
.
T Consensus 110 ~ 110 (293)
T 3t15_A 110 A 110 (293)
T ss_dssp -
T ss_pred h
Confidence 4
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.21 E-value=0.001 Score=60.03 Aligned_cols=129 Identities=9% Similarity=0.069 Sum_probs=70.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---------------ccHHHHHHHHHhccCCcee
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---------------TVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---------------~~~~~l~~~l~~~l~~kr~ 201 (331)
...+.++|..|+|||++|+.+++.... .-...+.+..+...... .....+...+.. ....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYS 121 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHH---CSSE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHh---CCCe
Confidence 457889999999999999999874211 11112333332221110 000112222221 2246
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCc---------------hH--------Hhhc--
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSR---------------SV--------ATMM-- 246 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~---------------~v--------a~~~-- 246 (331)
+|+||++..........|...+..+.. .++.||.||... ++ ...+
T Consensus 122 vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 201 (311)
T 4fcw_A 122 VILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRP 201 (311)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCH
T ss_pred EEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCH
Confidence 999999988777667777666542110 134477777651 11 1111
Q ss_pred ---cCC-ccccccccCCChHHHHHHHhhhC
Q 020066 247 ---KQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 ---~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+.. ..+ .+.|++.++-..++....
T Consensus 202 ~l~~R~~~~~--~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 202 EFLNRLDEIV--VFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp HHHTTCSEEE--ECCCCCHHHHHHHHHHHT
T ss_pred HHHhcCCeEE--EeCCCCHHHHHHHHHHHH
Confidence 112 345 678888888888877643
No 67
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.20 E-value=0.0003 Score=64.47 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=44.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe--CCCCCcc-ccHHHHHHHHHhccCCceeEEEEeCCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV--GKILDLS-TVMNVITIRCKEIPSSEMLLIALDGLCDL 211 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~-~~~~~l~~~l~~~l~~kr~LlVLDdvw~~ 211 (331)
+++-|+|++|+||||||..+... .-..+.|++. ....+.. .+.+.....+.+.+...+ +||+|++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccc
Confidence 46679999999999999988764 1123456666 2222211 345556555666665555 9999998753
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.20 E-value=0.0012 Score=59.30 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=66.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC--cc-ccHHHHHHHHHhcc----C--CceeEEEEeCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD--LS-TVMNVITIRCKEIP----S--SEMLLIALDGL 208 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~-~~~~~l~~~l~~~l----~--~kr~LlVLDdv 208 (331)
.-+-++|.+|+|||+||+.+.+.. ... .+.++.+...+ .. .+.......+.... . +.+.+|+||++
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l--~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 125 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA--NAP---FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEI 125 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH--TCC---EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEECh
Confidence 446689999999999999998743 111 22333322211 00 11111122222211 1 24689999999
Q ss_pred CCCCHHh------------HHHHHHhhcCC----------CCCCcEEEEecC----Cch-HH-hhccCC-ccccccccCC
Q 020066 209 CDLNDDN------------LANLRLLVTNM----------DLVGFYVLVTTQ----SRS-VA-TMMKQT-VPEAEHLIYF 259 (331)
Q Consensus 209 w~~~~~~------------~~~l~~~l~~~----------~~~gs~IIvTTR----~~~-va-~~~~~~-~~~~~~l~~L 259 (331)
....... .+.|...+... . .+..+|.||. ... +. ...+.. ..+ .+.++
T Consensus 126 ~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i--~~~~~ 202 (310)
T 1ofh_A 126 DKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKT-DHILFIASGAFQVARPSDLIPELQGRLPIRV--ELTAL 202 (310)
T ss_dssp GGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEEC-TTCEEEEEECCSSSCGGGSCHHHHHTCCEEE--ECCCC
T ss_pred hhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccC-CcEEEEEcCCcccCCcccCCHHHHhhCCceE--EcCCc
Confidence 7643211 44455444321 1 2455666642 211 10 111122 347 89999
Q ss_pred ChHHHHHHHhhh
Q 020066 260 SESNSWSNLNCE 271 (331)
Q Consensus 260 ~~~~s~~Lf~~~ 271 (331)
+.++-..++.++
T Consensus 203 ~~~~~~~il~~~ 214 (310)
T 1ofh_A 203 SAADFERILTEP 214 (310)
T ss_dssp CHHHHHHHHHSS
T ss_pred CHHHHHHHHHhh
Confidence 999999999864
No 69
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.04 E-value=0.00014 Score=64.56 Aligned_cols=126 Identities=13% Similarity=0.118 Sum_probs=62.4
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCCHH---
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLNDD--- 214 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~--- 214 (331)
+.++|..|+|||+||+.+++... ..|- .+..+.-.+.. .....+...+......++.+|+||++......
T Consensus 47 vll~G~~GtGKT~la~~la~~~~--~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~ 121 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH--VPFF---SMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT--CCCC---CCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----
T ss_pred EEEECCCCCcHHHHHHHHHHHhC--CCEE---EechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccc
Confidence 66899999999999999987532 1221 11111100000 00000001111111235689999998542110
Q ss_pred ------------hHHHHHHhhcCC--CCCCcEEEEecCCchHH--hhcc--C-CccccccccCCChHHHHHHHhhhC
Q 020066 215 ------------NLANLRLLVTNM--DLVGFYVLVTTQSRSVA--TMMK--Q-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 215 ------------~~~~l~~~l~~~--~~~gs~IIvTTR~~~va--~~~~--~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
....+...+... ......||.||...... .... . ...+ .+.+.+.++-.+++....
T Consensus 122 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i--~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 122 GGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQV--LVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp ------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCC--BCCCCCTTTHHHHHHHHT
T ss_pred cccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEE--EecCcCHHHHHHHHHHHH
Confidence 112223222211 10234677777655421 1111 1 2356 788889988888887655
No 70
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0048 Score=59.16 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=73.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCCC-
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDLN- 212 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~- 212 (331)
..+=|-++|.+|+|||.||+.+.+.. .-+| +.+..+.-.+.. .....+...+...-...+++|++|++...-
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~--~~~f---i~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 316 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT--DATF---IRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGG 316 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSB
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc--CCCe---EEEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccc
Confidence 45567799999999999999999843 2222 233333222221 223333333344445668999999987420
Q ss_pred -------H------HhHHHHHHhhcCCCC-CCcEEEEecCCchHH----hhccC-CccccccccCCChHHHHHHHhhhC
Q 020066 213 -------D------DNLANLRLLVTNMDL-VGFYVLVTTQSRSVA----TMMKQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 -------~------~~~~~l~~~l~~~~~-~gs~IIvTTR~~~va----~~~~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
. .....++..+..... .+-.||.||...+.. ...|. ...+ .+...+.++-.++|+.+.
T Consensus 317 ~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I--~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 317 ARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKV--EFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp CCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEE--CCCCCCHHHHHHHHHHHH
T ss_pred cccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEE--EeCCcCHHHHHHHHHHHh
Confidence 0 112233444432220 344567777655421 11122 3356 788888888888887654
No 71
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.96 E-value=0.002 Score=54.82 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=26.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGK 177 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 177 (331)
-.++.|+|.+|+|||||+..+.. . .-..++|++...
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSC
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCC
Confidence 35889999999999999998876 1 112455665544
No 72
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.92 E-value=0.0011 Score=60.36 Aligned_cols=25 Identities=8% Similarity=0.006 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-+-++|..|+|||+||..+++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4567799999999999999998853
No 73
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.89 E-value=0.0031 Score=64.50 Aligned_cols=142 Identities=15% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc---ccCCC-cCceEE-EEeCCCCC--ccccHH
Q 020066 117 TELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD---DIVSR-FPRHIW-FSVGKILD--LSTVMN 186 (331)
Q Consensus 117 ~~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~~-F~~~~w-v~vs~~~~--~~~~~~ 186 (331)
..++| .++.+...|... ...-+-++|.+|+|||++|+.+.+.- .+... .++.++ ++....+. ......
T Consensus 180 d~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~ 257 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHH
Confidence 35678 777888888742 22335689999999999999998742 11111 111111 11111110 002223
Q ss_pred HHHHHHHhccCCceeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh-------hccCCccccccccCC
Q 020066 187 VITIRCKEIPSSEMLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT-------MMKQTVPEAEHLIYF 259 (331)
Q Consensus 187 ~l~~~l~~~l~~kr~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~-------~~~~~~~~~~~l~~L 259 (331)
.+.. .....++.+|++| .. .+..+.++..+. . ...++|.||....... .......+ .+.+.
T Consensus 258 ~~~~---~~~~~~~~iLfiD--~~--~~~~~~L~~~l~--~-~~v~~I~at~~~~~~~~~~~d~al~rRf~~i--~v~~p 325 (758)
T 3pxi_A 258 KVMD---EIRQAGNIILFID--AA--IDASNILKPSLA--R-GELQCIGATTLDEYRKYIEKDAALERRFQPI--QVDQP 325 (758)
T ss_dssp HHHH---HHHTCCCCEEEEC--C----------CCCTT--S-SSCEEEEECCTTTTHHHHTTCSHHHHSEEEE--ECCCC
T ss_pred HHHH---HHHhcCCEEEEEc--Cc--hhHHHHHHHHHh--c-CCEEEEeCCChHHHHHHhhccHHHHhhCcEE--EeCCC
Confidence 3333 3334678899999 11 222233333333 2 3456666665444211 11122457 89999
Q ss_pred ChHHHHHHHhhhC
Q 020066 260 SESNSWSNLNCEL 272 (331)
Q Consensus 260 ~~~~s~~Lf~~~a 272 (331)
+.++...++....
T Consensus 326 ~~~~~~~il~~~~ 338 (758)
T 3pxi_A 326 SVDESIQILQGLR 338 (758)
T ss_dssp CHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998643
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.87 E-value=0.0017 Score=56.93 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=65.2
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCC--ccccHHHHHHHHHhccCCceeEEEEeCCCCC------
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILD--LSTVMNVITIRCKEIPSSEMLLIALDGLCDL------ 211 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~------ 211 (331)
+.|+|..|+|||||++.+++... . ..+.+....-.. .......+...++..-...+.++++|++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~---~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~ 126 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 126 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC----
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--C---CEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCc
Confidence 88999999999999999987432 1 122222110000 0011112222233322345789999998421
Q ss_pred ----CHHh----HHHHHHhhcCCCC-CCcEEEEecCCchHHhh--cc---CCccccccccCCChHHHHHHHhhhC
Q 020066 212 ----NDDN----LANLRLLVTNMDL-VGFYVLVTTQSRSVATM--MK---QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ----~~~~----~~~l~~~l~~~~~-~gs~IIvTTR~~~va~~--~~---~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.... ...+...+..+.. ...-++.||...++... .. ....+ .+...+.++-.++++..+
T Consensus 127 ~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i--~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 127 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI--AIDAPDVKGREQILRIHA 199 (254)
T ss_dssp -----CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEE--ECCSCCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEE--eeCCcCHHHHHHHHHHHH
Confidence 0011 2334444443320 22345556666554321 11 22356 788888888788887654
No 75
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.0053 Score=59.72 Aligned_cols=126 Identities=14% Similarity=0.128 Sum_probs=67.4
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHHHHHHHHHhcc-CCceeEEEEeCCCCCC-----
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMNVITIRCKEIP-SSEMLLIALDGLCDLN----- 212 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~l~~~l~~~l-~~kr~LlVLDdvw~~~----- 212 (331)
+.|+|..|+||||||+.+++... .. .+.++.+.-.+.. .........+.+.. ...++++++|++....
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~---~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~ 141 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VP---FITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGS 141 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CC---EEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CC---EEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhcc
Confidence 78999999999999999988432 12 2333332211111 11111112222222 2346899999985320
Q ss_pred -----HHh----HHHHHHhhcCCCC-CCcEEEEecCCchHHh--hcc---CCccccccccCCChHHHHHHHhhhC
Q 020066 213 -----DDN----LANLRLLVTNMDL-VGFYVLVTTQSRSVAT--MMK---QTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 -----~~~----~~~l~~~l~~~~~-~gs~IIvTTR~~~va~--~~~---~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... ...+...+..... .+..|+.||...++.. ... ....+ .+...+.++-.++|+.++
T Consensus 142 ~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i--~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 142 GVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI--AIDAPDVKGREQILRIHA 214 (499)
T ss_dssp STTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEE--ECCCCCHHHHHHHHHHTT
T ss_pred CcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEE--ecCCCCHHHHHHHHHHHH
Confidence 122 2344444443220 3445666776665421 111 12356 788888888888887654
No 76
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.78 E-value=0.0024 Score=56.93 Aligned_cols=125 Identities=12% Similarity=0.096 Sum_probs=64.6
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCC---CCCccccHHHHHHHHHhccCCceeEEEEeCCCCC-----
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGK---ILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDL----- 211 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~----- 211 (331)
+.|+|..|+|||||++.+..... . ..+.+.... .+. ......+...++..-...+.++++|++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~---~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~ 149 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFVEMFV-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRG 149 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHHHHHHSTT-THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--
T ss_pred EEEECCCcChHHHHHHHHHHHcC--C---CEEEecHHHHHHHHh-hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccc
Confidence 88999999999999999987432 1 122332110 000 011112222233322345789999998420
Q ss_pred -----CHHhH----HHHHHhhcCCCC-CCcEEEEecCCchHHh--hc---cCCccccccccCCChHHHHHHHhhhC
Q 020066 212 -----NDDNL----ANLRLLVTNMDL-VGFYVLVTTQSRSVAT--MM---KQTVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -----~~~~~----~~l~~~l~~~~~-~gs~IIvTTR~~~va~--~~---~~~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
....+ ..+...+..+.. ...-++.||...++.. .. .....+ .+.+.+.++-.+++..++
T Consensus 150 ~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i--~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 150 SGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQI--AIDAPDVKGREQILRIHA 223 (278)
T ss_dssp ------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEE--ECCCCCHHHHHHHHHHHH
T ss_pred cccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEE--EeCCcCHHHHHHHHHHHH
Confidence 00112 233334433320 1234455666554321 11 123356 788888888888887654
No 77
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.002 Score=61.49 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=69.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
..+=|-++|++|+|||.||+++.+.. .-+| +.++.+.-.+.. .....+...+...-...+++|++|++...
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~--~~~f---~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~ 288 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT--NATF---LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGT 288 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHC
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh--CCCE---EEEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhh
Confidence 34567789999999999999999843 2222 233333322221 22222222222233445899999998531
Q ss_pred -----CH---H----hHHHHHHhhcCCCC-CCcEEEEecCCchHHh--hcc--C-CccccccccCCChHHHHHHHhhh
Q 020066 212 -----ND---D----NLANLRLLVTNMDL-VGFYVLVTTQSRSVAT--MMK--Q-TVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 212 -----~~---~----~~~~l~~~l~~~~~-~gs~IIvTTR~~~va~--~~~--~-~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
+. . ....++..+....+ .+-.||.||...+... ... . ...+ .+...+.+.-.++|+.+
T Consensus 289 ~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I--~i~lPd~~~R~~Il~~~ 364 (434)
T 4b4t_M 289 KRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKI--EFPLPSEDSRAQILQIH 364 (434)
T ss_dssp CCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEE--ECCCCCHHHHHHHHHHH
T ss_pred ccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEE--EeCCcCHHHHHHHHHHH
Confidence 00 1 12234444443220 3445666886655321 111 1 2345 67777888777887654
No 78
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.60 E-value=0.0088 Score=56.79 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=71.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC--
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL-- 211 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~-- 211 (331)
..+=|-++|.+|+|||.||+++.+.. .-+| +.++.+.-.+.. .....+...+...-...+++|++|++...
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~ 289 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGT 289 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSC
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcc
Confidence 34567799999999999999999853 2222 223333222221 22222333333333456899999988642
Q ss_pred ---------C---HHhHHHHHHhhcC--CCCCCcEEEEecCCchHHh--hcc--C-CccccccccCCChHHHHHHHhhhC
Q 020066 212 ---------N---DDNLANLRLLVTN--MDLVGFYVLVTTQSRSVAT--MMK--Q-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ---------~---~~~~~~l~~~l~~--~~~~gs~IIvTTR~~~va~--~~~--~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+ ......++..+.. .. .+-.||.||...+... ... . ...+ .+..-+.+.-.++|+.+.
T Consensus 290 ~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaATNrpd~LDpALlRpGRfD~~I--~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 290 KRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMATNKIETLDPALIRPGRIDRKI--LFENPDLSTKKKILGIHT 366 (437)
T ss_dssp CCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEESCSTTCCTTSSCTTTEEEEE--CCCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeCCChhhcCHHHhcCCceeEEE--EcCCcCHHHHHHHHHHHh
Confidence 0 0122334433332 22 4556777886665322 111 1 2245 677778888788887654
No 79
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.58 E-value=0.0019 Score=55.32 Aligned_cols=24 Identities=8% Similarity=0.009 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-+.|+|.+|+||||+|..+.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999888774
No 80
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.55 E-value=0.0073 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++|+|..|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988753
No 81
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.54 E-value=0.0083 Score=61.28 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=73.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc-------------c--ccHHHHHHHHHhccCCcee
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL-------------S--TVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-------------~--~~~~~l~~~l~~~l~~kr~ 201 (331)
...+-++|..|+|||+||+.+.+.. . ...+.++.+.-... . .....+...+.. ....
T Consensus 488 ~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~---~~~~ 559 (758)
T 1r6b_X 488 VGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK---HPHA 559 (758)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH---CSSE
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHh---CCCc
Confidence 3468899999999999999998743 1 11223333222110 0 001112222322 3357
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCCC----------CCcEEEEecCCch----------------------HHhhc---
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMDL----------VGFYVLVTTQSRS----------------------VATMM--- 246 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~~----------~gs~IIvTTR~~~----------------------va~~~--- 246 (331)
+|+||++...+.+..+.|...+..+.. .++.||.||.... +...+
T Consensus 560 vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 639 (758)
T 1r6b_X 560 VLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPE 639 (758)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHH
T ss_pred EEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHH
Confidence 999999998877777777776653210 2355777875311 11111
Q ss_pred --cCC-ccccccccCCChHHHHHHHhhhC
Q 020066 247 --KQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 --~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
... .++ .+.+|+.++-..++....
T Consensus 640 l~~R~~~~i--~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 640 FRNRLDNII--WFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp HHTTCSEEE--ECCCCCHHHHHHHHHHHH
T ss_pred HHhhCCcce--eeCCCCHHHHHHHHHHHH
Confidence 112 346 899999998888887654
No 82
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.54 E-value=0.0053 Score=57.22 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+-++|..|+|||+||+.+.+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999874
No 83
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.53 E-value=0.002 Score=63.47 Aligned_cols=129 Identities=14% Similarity=0.155 Sum_probs=64.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------ccHHHHHHHHHhccCCceeEEE
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------TVMNVITIRCKEIPSSEMLLIA 204 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------~~~~~l~~~l~~~l~~kr~LlV 204 (331)
....+.++|.+|+||||||+.+.... ...| .-+..+...+.. .....+...+..... ..-+++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~-~~~vl~ 180 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGK-LNPVFL 180 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC--------------------CHHHHHHTTCS-SSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhc-cCCEEE
Confidence 45588999999999999999998742 2122 111111111100 001111122222222 334888
Q ss_pred EeCCCCCCHH----hHHHHHHhhcCCC--------------CCCcEEEEecCCchH-H-hhccCCccccccccCCChHHH
Q 020066 205 LDGLCDLNDD----NLANLRLLVTNMD--------------LVGFYVLVTTQSRSV-A-TMMKQTVPEAEHLIYFSESNS 264 (331)
Q Consensus 205 LDdvw~~~~~----~~~~l~~~l~~~~--------------~~gs~IIvTTR~~~v-a-~~~~~~~~~~~~l~~L~~~~s 264 (331)
||.+...... ....++..+.... ..+..||.||..... . .......++ .+.+++.++-
T Consensus 181 lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi--~~~~~~~~e~ 258 (543)
T 3m6a_A 181 LDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRMEII--NIAGYTEIEK 258 (543)
T ss_dssp EEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEE--ECCCCCHHHH
T ss_pred EhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhccee--eeCCCCHHHH
Confidence 9999875332 1233344332111 012356666654331 1 111222467 8999999999
Q ss_pred HHHHhhhC
Q 020066 265 WSNLNCEL 272 (331)
Q Consensus 265 ~~Lf~~~a 272 (331)
..++.++.
T Consensus 259 ~~Il~~~l 266 (543)
T 3m6a_A 259 LEIVKDHL 266 (543)
T ss_dssp HHHHHHTH
T ss_pred HHHHHHHH
Confidence 88888754
No 84
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.52 E-value=0.0071 Score=62.35 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=68.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
..-+.|+|.+|+||||||+.+.+. ....| +.++.+...... .....+...+.......+.++++|++...
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 312 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhc
Confidence 346889999999999999999873 22222 233321111111 12222333344444456789999998421
Q ss_pred -----CH---HhHHHHHHhhcCCCC-CCcEEEEecCCch-HHhhc---cC-CccccccccCCChHHHHHHHhhhC
Q 020066 212 -----ND---DNLANLRLLVTNMDL-VGFYVLVTTQSRS-VATMM---KQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 -----~~---~~~~~l~~~l~~~~~-~gs~IIvTTR~~~-va~~~---~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.. .....+...+..... .+..+|.||...+ +-..+ +. ...+ .+...+.++-.+++...+
T Consensus 313 ~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i--~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 313 REKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREV--DIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEE--CCCCCCHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccccccc--ccCCCCHHHHHHHHHHHH
Confidence 00 112233333322110 3445666665543 21111 11 1345 678888888888887654
No 85
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.52 E-value=0.01 Score=60.83 Aligned_cols=128 Identities=16% Similarity=0.127 Sum_probs=71.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCc--cccHHHHHHHHHhccCCceeEEEEeCCCCC---
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDL--STVMNVITIRCKEIPSSEMLLIALDGLCDL--- 211 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~--- 211 (331)
.+=|-++|.+|+|||+||+.+++.. ..+| +.++.+.-.+. ......+...+.......+++|+||++...
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~ 312 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPK 312 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccc
Confidence 4567799999999999999999843 2222 23332211111 023344444555556677999999998642
Q ss_pred ----CHH----hHHHHHHhhcC--CCCCCcEEEEecCCchHH-hhc---cC-CccccccccCCChHHHHHHHhhhC
Q 020066 212 ----NDD----NLANLRLLVTN--MDLVGFYVLVTTQSRSVA-TMM---KQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ----~~~----~~~~l~~~l~~--~~~~gs~IIvTTR~~~va-~~~---~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+.+ ....++..+.. .. .+-.||.||...+.. ..+ +. .+.+ .+...+.++-.++|+.+.
T Consensus 313 r~~~~~~~~~riv~~LL~~mdg~~~~-~~V~VIaaTN~~d~LD~ALrR~GRFd~~I--~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 313 REKTHGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREV--DIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTTCCCTTHHHHHHHHHTHHHHCCGG-GCEEEEEECSSTTTSCTTTTSTTSSCEEE--ECCCCCHHHHHHHHHHTC
T ss_pred cCCCCChHHHHHHHHHHHHHhccccc-CCEEEEEecCChhhcCHHHhCCcccceEE--ecCCCCHHHHHHHHHHHh
Confidence 001 11223322221 22 344566666654421 111 11 2356 788888888888887654
No 86
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.50 E-value=0.01 Score=54.41 Aligned_cols=124 Identities=11% Similarity=0.090 Sum_probs=65.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhccCCceeEEEEeCCCCCCHHh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEIPSSEMLLIALDGLCDLNDDN 215 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~~~~ 215 (331)
....+.++|..|+||||||+.+.+... ..| .. .+.... .....+...+. .+. ++.++++|++.......
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~--~~~----~~-~sg~~~--~~~~~l~~~~~-~~~-~~~v~~iDE~~~l~~~~ 118 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ--TNI----HV-TSGPVL--VKQGDMAAILT-SLE-RGDVLFIDEIHRLNKAV 118 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT--CCE----EE-EETTTC--CSHHHHHHHHH-HCC-TTCEEEEETGGGCCHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC--CCE----EE-EechHh--cCHHHHHHHHH-Hcc-CCCEEEEcchhhcCHHH
Confidence 346789999999999999999988431 111 11 111111 11222222222 222 34578889887654444
Q ss_pred HHHHHHhhcCCC-------C----------CCcEEE-EecCCchHHhhccC-C-ccccccccCCChHHHHHHHhhhC
Q 020066 216 LANLRLLVTNMD-------L----------VGFYVL-VTTQSRSVATMMKQ-T-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 216 ~~~l~~~l~~~~-------~----------~gs~II-vTTR~~~va~~~~~-~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.+.+...+.... . +...++ .|++...+...+.. . -.+ .+++.+.++-.+++.+.+
T Consensus 119 ~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~--~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 119 EELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIIL--ELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp HHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEE--ECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCcee--eCCCCCHHHHHHHHHHHH
Confidence 455543332110 0 011222 34443332211111 1 235 899999999999998764
No 87
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.44 E-value=0.0041 Score=57.84 Aligned_cols=100 Identities=11% Similarity=0.021 Sum_probs=59.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceE-EEEeCCCCCc------c------ccHHHHHHHHHhccCCceeEEE
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHI-WFSVGKILDL------S------TVMNVITIRCKEIPSSEMLLIA 204 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~------~------~~~~~l~~~l~~~l~~kr~LlV 204 (331)
.+++|+|..|+|||||.+.+..... ......+ .+.-.-.+.. . .........+...|...+=+|+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 4899999999999999998864210 0001111 1110000000 0 0112233467777888899999
Q ss_pred EeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh
Q 020066 205 LDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM 245 (331)
Q Consensus 205 LDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~ 245 (331)
+|...+ .+.++.+..... .|..||+||...+.+..
T Consensus 202 lDEp~d--~e~~~~~~~~~~----~G~~vl~t~H~~~~~~~ 236 (356)
T 3jvv_A 202 VGEMRD--LETIRLALTAAE----TGHLVFGTLHTTSAAKT 236 (356)
T ss_dssp ESCCCS--HHHHHHHHHHHH----TTCEEEEEESCSSHHHH
T ss_pred cCCCCC--HHHHHHHHHHHh----cCCEEEEEEccChHHHH
Confidence 999985 455555544432 46679999988876643
No 88
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.022 Score=59.09 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=55.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc---------------ccHHHHHHHHHhccCCcee
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS---------------TVMNVITIRCKEIPSSEML 201 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~---------------~~~~~l~~~l~~~l~~kr~ 201 (331)
...+.|+|..|+|||+||+.+.+.-.-. . ...+.++.+...... .....+...+.. ....
T Consensus 588 ~~~vLl~Gp~GtGKT~lA~~la~~~~~~-~-~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~ 662 (854)
T 1qvr_A 588 IGSFLFLGPTGVGKTELAKTLAATLFDT-E-EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR---RPYS 662 (854)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSS-G-GGEEEECTTTCCSSGGGGGC--------------CHHHHHHH---CSSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCC-C-CcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHh---CCCe
Confidence 3578899999999999999998742110 0 112223222211110 000122222222 2235
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCCC----------CCCcEEEEecCC
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNMD----------LVGFYVLVTTQS 239 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~~----------~~gs~IIvTTR~ 239 (331)
+|+||++...+.+..+.|...+..+. ..++.||+||..
T Consensus 663 vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 663 VILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp EEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred EEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 89999998887777888887776431 024458888874
No 89
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.34 E-value=0.0087 Score=54.55 Aligned_cols=139 Identities=14% Similarity=0.064 Sum_probs=73.2
Q ss_pred CCCC---cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHH-HH
Q 020066 118 ELEG---SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIR-CK 193 (331)
Q Consensus 118 ~~vG---~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~-l~ 193 (331)
.++| .++.+...+... .-+-++|.+|+|||+||+.+.+.. ...| ..+..+..... ..+... ..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~--~~~~---~~i~~~~~~~~----~~l~g~~~~ 94 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTM--DLDF---HRIQFTPDLLP----SDLIGTMIY 94 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHT--TCCE---EEEECCTTCCH----HHHHEEEEE
T ss_pred ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHh--CCCe---EEEecCCCCCh----hhcCCceee
Confidence 4556 334444444431 236689999999999999998732 2222 11222111110 001000 00
Q ss_pred ----h--ccCCc---eeEEEEeCCCCCCHHhHHHHHHhhcCC-----------CCCCcEEEEecCCch------H-Hhhc
Q 020066 194 ----E--IPSSE---MLLIALDGLCDLNDDNLANLRLLVTNM-----------DLVGFYVLVTTQSRS------V-ATMM 246 (331)
Q Consensus 194 ----~--~l~~k---r~LlVLDdvw~~~~~~~~~l~~~l~~~-----------~~~gs~IIvTTR~~~------v-a~~~ 246 (331)
. ..... ..+|++|++..........+...+... . ....||.|+.... + ....
T Consensus 95 ~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~-~~~~viat~np~~~~~~~~l~~~l~ 173 (331)
T 2r44_A 95 NQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLD-NPFLVLATQNPVEQEGTYPLPEAQV 173 (331)
T ss_dssp ETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECC-SSCEEEEEECTTCCSCCCCCCHHHH
T ss_pred cCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECC-CCEEEEEecCCCcccCcccCCHHHH
Confidence 0 00001 259999999887666666666554321 2 3455665655221 1 1111
Q ss_pred cCCc-cccccccCCChHHHHHHHhhhC
Q 020066 247 KQTV-PEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 247 ~~~~-~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.... .+ .+.+.+.++-.+++.+.+
T Consensus 174 ~Rf~~~i--~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 174 DRFMMKI--HLTYLDKESELEVMRRVS 198 (331)
T ss_dssp TTSSEEE--ECCCCCHHHHHHHHHHHH
T ss_pred hheeEEE--EcCCCCHHHHHHHHHhcc
Confidence 1222 36 789999999999988765
No 90
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.31 E-value=0.023 Score=49.57 Aligned_cols=22 Identities=14% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999976
No 91
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.31 E-value=0.003 Score=53.76 Aligned_cols=25 Identities=8% Similarity=0.292 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..-.+++|+|..|+|||||++.+..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 92
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.25 E-value=0.053 Score=46.90 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999976
No 93
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.22 E-value=0.0072 Score=58.04 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=47.3
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-ccHHHHHHHHHhc---cCCce
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-TVMNVITIRCKEI---PSSEM 200 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~l~~~l~~~---l~~kr 200 (331)
.+++++.......+-+-++|.+|+|||+||+.+.+.-...-. .+.++.+.-++.. ...+.+...+... -..++
T Consensus 51 ~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~ 127 (456)
T 2c9o_A 51 VIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVP---FCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKET 127 (456)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSC---EEEEEGGGGCCSSSCHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCce---EEEEeHHHHHHHhhhhhHHHHHHHHHHHhhhhcCC
Confidence 445555433223345778999999999999999885321111 1223333333222 2223344444444 34568
Q ss_pred eEEEEeCCCC
Q 020066 201 LLIALDGLCD 210 (331)
Q Consensus 201 ~LlVLDdvw~ 210 (331)
++|++|++..
T Consensus 128 ~il~iDEid~ 137 (456)
T 2c9o_A 128 KEVYEGEVTE 137 (456)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEechhh
Confidence 9999999853
No 94
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.20 E-value=0.012 Score=54.62 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=29.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCc----CceEEEEeCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRF----PRHIWFSVGKIL 179 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~ 179 (331)
.-.++.|+|..|+|||||+..+.......... ..++|++....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~ 177 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF 177 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence 34689999999999999999887642111111 134777665443
No 95
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.18 E-value=0.0055 Score=51.86 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.2
Q ss_pred HHHHHHHhcC-CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 124 DSVKNALLRD-GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 124 ~~l~~~L~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+.|.+.+... .....+|+|.|..|+|||||++.+..
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4455555533 34567999999999999999998875
No 96
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0051 Score=58.62 Aligned_cols=68 Identities=15% Similarity=0.098 Sum_probs=42.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLC 209 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw 209 (331)
.+=+-++|.+|+|||+||+++.+.. .-+| +.+..+.-.+.. .....+...+...-...+++|++|++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~--~~~~---~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST--KAAF---IRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH--TCEE---EEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh--CCCe---EEEecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 4557799999999999999999843 2222 334444333322 223333333333445668999999984
No 97
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.15 E-value=0.027 Score=49.73 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 98
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.08 E-value=0.0027 Score=51.60 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=18.6
Q ss_pred EEEEEEecCCchhHHHHHHH
Q 020066 138 RFIHIVGVSGTEVTHIAHRV 157 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v 157 (331)
.+|.|+|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 99
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.022 Score=49.25 Aligned_cols=98 Identities=13% Similarity=0.037 Sum_probs=54.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCC----------CCCcc------ccHHHHHHHHHhccCCce
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGK----------ILDLS------TVMNVITIRCKEIPSSEM 200 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----------~~~~~------~~~~~l~~~l~~~l~~kr 200 (331)
-.++.|+|..|+||||++..+....... ... ++.+.... ..... .....+...+.+.+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~-g~k-Vli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYA-DVK-YLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCC-EEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhc-CCE-EEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 4678889999999999996665432111 111 11221111 00000 233455566666555444
Q ss_pred e-EEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc
Q 020066 201 L-LIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR 240 (331)
Q Consensus 201 ~-LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~ 240 (331)
+ +||+|.+.....+..+.+.. +.+ .|-.||+|-+..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~-L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANI-LAE---NGFVVIISGLDK 126 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHH-HHH---TTCEEEEECCSB
T ss_pred CCEEEEecCccCcHHHHHHHHH-HHh---CCCeEEEEeccc
Confidence 4 99999987544344444433 221 367899999843
No 100
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.94 E-value=0.012 Score=50.70 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=28.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCC----CcCceEEEEeCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVS----RFPRHIWFSVGKI 178 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~ 178 (331)
.++.|+|.+|+|||||+..+........ .-..++|++....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~ 69 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT 69 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence 5889999999999999998876321211 1235677766553
No 101
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.92 E-value=0.0043 Score=51.67 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999774
No 102
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.92 E-value=0.022 Score=49.97 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999865
No 103
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.89 E-value=0.0038 Score=50.83 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 104
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.84 E-value=0.004 Score=51.21 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47889999999999999999773
No 105
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.84 E-value=0.023 Score=51.79 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=19.3
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
+-|+|..|+|||+||+.+.+.
T Consensus 48 vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHh
Confidence 779999999999999999874
No 106
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.84 E-value=0.016 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35799999999999999999865
No 107
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.83 E-value=0.011 Score=54.82 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=45.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-CC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-SS 198 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~~ 198 (331)
-.++.|+|.+|+|||||+..+........ ..++|++....++.. .+.+++...+...+ ..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 36899999999999999988876422111 235677665554421 33444444444333 24
Q ss_pred ceeEEEEeCCCC
Q 020066 199 EMLLIALDGLCD 210 (331)
Q Consensus 199 kr~LlVLDdvw~ 210 (331)
+.-++|+|.+..
T Consensus 139 ~~dlvVIDSi~~ 150 (356)
T 3hr8_A 139 VVDLIVVDSVAA 150 (356)
T ss_dssp CCSEEEEECTTT
T ss_pred CCCeEEehHhhh
Confidence 566899998754
No 108
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.83 E-value=0.0086 Score=54.03 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.....+|+|+|..|+||||||+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44577999999999999999988865
No 109
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.79 E-value=0.0049 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 110
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.77 E-value=0.012 Score=52.22 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=54.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEE-EeC-----CCC-Ccc------ccHHHHHHHHHhccCCceeE
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWF-SVG-----KIL-DLS------TVMNVITIRCKEIPSSEMLL 202 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-~vs-----~~~-~~~------~~~~~l~~~l~~~l~~kr~L 202 (331)
.-.+++|+|..|+|||||.+.+..-.. ..+...+++ ... +.. ... .+...+...+...+..++=+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 346899999999999999998865211 001122221 100 000 000 00012234455555556778
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
|++|...+ ......+.... . .|.-|++||...++..
T Consensus 102 lllDEp~D--~~~~~~~l~~~---~-~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 102 IFVGEMRD--LETVETALRAA---E-TGHLVFGTLHTNTAID 137 (261)
T ss_dssp EEESCCCS--HHHHHHHHHHH---H-TTCEEEEEECCSSHHH
T ss_pred EEeCCCCC--HHHHHHHHHHH---c-cCCEEEEEeCcchHHH
Confidence 99998863 33333333332 2 4667899998877544
No 111
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.77 E-value=0.024 Score=51.81 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=46.1
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHH-HHH---HHhccC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVI-TIR---CKEIPS 197 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l-~~~---l~~~l~ 197 (331)
++-|.|.+|+|||||+.++.........=...+|++....++.. .+.++. ... +...-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 67899999999999997765432211001346788777666533 344444 332 222235
Q ss_pred CceeEEEEeCCCCC
Q 020066 198 SEMLLIALDGLCDL 211 (331)
Q Consensus 198 ~kr~LlVLDdvw~~ 211 (331)
++.-|||+|.|...
T Consensus 110 ~~~~lvVIDSI~aL 123 (333)
T 3io5_A 110 GEKVVVFIDSLGNL 123 (333)
T ss_dssp TCCEEEEEECSTTC
T ss_pred cCceEEEEeccccc
Confidence 67889999998653
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.71 E-value=0.0048 Score=52.08 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|+|+.|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999763
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.65 E-value=0.0045 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999773
No 114
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.60 E-value=0.0071 Score=51.02 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-.+|.|+|+.|+|||||++.+...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 115
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.59 E-value=0.0068 Score=50.23 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+++.+.+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999774
No 116
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.57 E-value=0.037 Score=53.78 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=62.6
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC-Ccc-----ccHHHH--HHHHHhccCC---ceeEEEEeC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL-DLS-----TVMNVI--TIRCKEIPSS---EMLLIALDG 207 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~-----~~~~~l--~~~l~~~l~~---kr~LlVLDd 207 (331)
-+-++|.+|+|||+||+.+.+.-.....| ..+.-.+ ... ...... ...+....++ ...+|++|+
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~~~~f-----~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDE 117 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQNARAF-----EYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDE 117 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSSCCEE-----EEECCTTCCHHHHHCCBC----------CBCCTTSGGGCSEEEEES
T ss_pred eeEeecCchHHHHHHHHHHHHHHhhhhHH-----HHHHHhcCCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHh
Confidence 46689999999999999998743211122 2211111 100 000000 0111112222 244799999
Q ss_pred CCCCCHHhHHHHHHhhcCC------CC--CCc-EEEEecCCchH-----HhhccC-CccccccccCCCh-HHHHHHHhhh
Q 020066 208 LCDLNDDNLANLRLLVTNM------DL--VGF-YVLVTTQSRSV-----ATMMKQ-TVPEAEHLIYFSE-SNSWSNLNCE 271 (331)
Q Consensus 208 vw~~~~~~~~~l~~~l~~~------~~--~gs-~IIvTTR~~~v-----a~~~~~-~~~~~~~l~~L~~-~~s~~Lf~~~ 271 (331)
++.........+...+..+ .. ... -+|+||..-.- ...... ...+ .+++++. ++-..++...
T Consensus 118 I~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i--~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 118 IWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRL--WLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp GGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEE--ECCSCCCHHHHHHHHTCC
T ss_pred HhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHH--HHHHhhhhhhHHHHHhcc
Confidence 9877666666676665321 00 112 23666642110 011111 1234 6788887 5556777765
Q ss_pred C
Q 020066 272 L 272 (331)
Q Consensus 272 a 272 (331)
.
T Consensus 196 ~ 196 (500)
T 3nbx_X 196 Q 196 (500)
T ss_dssp C
T ss_pred c
Confidence 4
No 117
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.56 E-value=0.028 Score=52.38 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 5799999999999999999865
No 118
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.006 Score=50.68 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.55 E-value=0.017 Score=53.55 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=45.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-CC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-SS 198 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~~ 198 (331)
-.++.|+|.+|+||||||..+....... =..++|++....++.. .+.++....+.... ..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 3588899999999999998876532111 1245677766554422 23444444444333 34
Q ss_pred ceeEEEEeCCCC
Q 020066 199 EMLLIALDGLCD 210 (331)
Q Consensus 199 kr~LlVLDdvw~ 210 (331)
+.-+||+|.+..
T Consensus 139 ~~~lIVIDsl~~ 150 (349)
T 2zr9_A 139 ALDIIVIDSVAA 150 (349)
T ss_dssp CCSEEEEECGGG
T ss_pred CCCEEEEcChHh
Confidence 567999998754
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.53 E-value=0.0062 Score=50.45 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+.|.|+|+.|+||||+|+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999763
No 121
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.51 E-value=0.024 Score=52.88 Aligned_cols=71 Identities=11% Similarity=0.074 Sum_probs=45.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhccC-Cc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIPS-SE 199 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l~-~k 199 (331)
.++-|.|.+|+||||||..+....... =..++|++....++.. .+.+++...+....+ .+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~ 152 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGA 152 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCC
Confidence 477789999999999998776542211 1256788776655432 234555555544443 34
Q ss_pred eeEEEEeCCCC
Q 020066 200 MLLIALDGLCD 210 (331)
Q Consensus 200 r~LlVLDdvw~ 210 (331)
.-+||+|.+..
T Consensus 153 ~~lVVIDsl~~ 163 (366)
T 1xp8_A 153 IDVVVVDSVAA 163 (366)
T ss_dssp CSEEEEECTTT
T ss_pred CCEEEEeChHH
Confidence 56999998754
No 122
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.50 E-value=0.034 Score=51.03 Aligned_cols=98 Identities=12% Similarity=-0.062 Sum_probs=54.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--------c--cHHHHHHHHHhccCCceeEEEEeC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--------T--VMNVITIRCKEIPSSEMLLIALDG 207 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--------~--~~~~l~~~l~~~l~~kr~LlVLDd 207 (331)
.+++|+|..|+|||||.+.+..-.. .-...+.+.-....... . .-......+...|..++=+|+||.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 4789999999999999999976321 11233333211111100 0 111223345566777788999999
Q ss_pred CCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHh
Q 020066 208 LCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVAT 244 (331)
Q Consensus 208 vw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~ 244 (331)
.... +.++.+ ..+..+ +.-+|+||...+...
T Consensus 249 ~~~~--e~~~~l-~~~~~g---~~tvi~t~H~~~~~~ 279 (330)
T 2pt7_A 249 LRSS--EAYDFY-NVLCSG---HKGTLTTLHAGSSEE 279 (330)
T ss_dssp CCST--HHHHHH-HHHHTT---CCCEEEEEECSSHHH
T ss_pred CChH--HHHHHH-HHHhcC---CCEEEEEEcccHHHH
Confidence 8863 345544 334322 223677776555433
No 123
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.49 E-value=0.021 Score=53.30 Aligned_cols=102 Identities=10% Similarity=0.041 Sum_probs=56.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceE-EEEeCCCCCc------c-c-----cHHHHHHHHHhccCCceeE
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHI-WFSVGKILDL------S-T-----VMNVITIRCKEIPSSEMLL 202 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~------~-~-----~~~~l~~~l~~~l~~kr~L 202 (331)
.-.+++|+|..|+|||||.+.+..-... .....+ ++.-.-.+.. . . +...+...+...+...+-+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ 212 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 212 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCE
Confidence 4468999999999999999888652110 001111 1111000000 0 0 1112234566666667889
Q ss_pred EEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCchHHhh
Q 020066 203 IALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSRSVATM 245 (331)
Q Consensus 203 lVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~va~~ 245 (331)
|++|.+.+ .+......... . .|..|+.|+...++...
T Consensus 213 illdE~~d--~e~~~~~l~~~---~-~g~~vi~t~H~~~~~~~ 249 (372)
T 2ewv_A 213 IFVGEMRD--LETVETALRAA---E-TGHLVFGTLHTNTAIDT 249 (372)
T ss_dssp EEESCCCS--HHHHHHHHHHH---T-TTCEEEECCCCCSHHHH
T ss_pred EEECCCCC--HHHHHHHHHHH---h-cCCEEEEEECcchHHHH
Confidence 99999874 33333333332 2 46678889887765443
No 124
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.49 E-value=0.0074 Score=49.51 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-.+|+|+|+.|+|||||++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 125
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.49 E-value=0.0085 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999877
No 126
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.49 E-value=0.0084 Score=49.78 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998763
No 127
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.48 E-value=0.013 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|.++|++|+||||+|+.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998763
No 128
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.48 E-value=0.014 Score=52.55 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|.|.|++|+||||+|+.+...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999763
No 129
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.45 E-value=0.014 Score=54.83 Aligned_cols=34 Identities=12% Similarity=-0.090 Sum_probs=25.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
++++.+..- ..-..++|+|..|+|||||++.+.+
T Consensus 163 raID~~~pi-~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 163 RVLDLASPI-GRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp HHHHHHSCC-BTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred eeeeeeeee-cCCcEEEEecCCCCChhHHHHHHHH
Confidence 455655532 2234789999999999999988865
No 130
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.42 E-value=0.0087 Score=50.70 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999876
No 131
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.42 E-value=0.035 Score=51.16 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=31.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCC----CcCceEEEEeCCCCC
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVS----RFPRHIWFSVGKILD 180 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~ 180 (331)
.-.++.|+|.+|+||||||..+........ .-..++|++....++
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~ 169 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFR 169 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC
Confidence 346888999999999999988876422211 123567887777655
No 132
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.40 E-value=0.0075 Score=50.49 Aligned_cols=22 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999999773
No 133
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.38 E-value=0.0076 Score=50.63 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 134
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.38 E-value=0.0073 Score=50.94 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.8
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-.+|+|+|+.|+|||||++.+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34568999999999999999998763
No 135
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.37 E-value=0.0082 Score=50.56 Aligned_cols=22 Identities=18% Similarity=0.187 Sum_probs=19.8
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999865
No 136
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.37 E-value=0.01 Score=50.24 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|+|+|..|+|||||++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998763
No 137
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.36 E-value=0.0081 Score=49.49 Aligned_cols=22 Identities=23% Similarity=0.560 Sum_probs=19.0
Q ss_pred cEEEEEEecCCchhHHHHHHHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
-.+++|+|..|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4589999999999999999543
No 138
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.36 E-value=0.0064 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|+|..|+||||||+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 139
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.35 E-value=0.0087 Score=49.79 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 140
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.33 E-value=0.0083 Score=49.66 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 141
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.30 E-value=0.021 Score=53.03 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=44.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-CC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-SS 198 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~~ 198 (331)
-.++.|.|.+|+||||||..+........ ..++|++....++.. .+.+++...+.... ..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 35788999999999999988765322111 246677776555422 12344444433322 24
Q ss_pred ceeEEEEeCCCC
Q 020066 199 EMLLIALDGLCD 210 (331)
Q Consensus 199 kr~LlVLDdvw~ 210 (331)
+.-+||+|.+..
T Consensus 141 ~~~lVVIDsl~~ 152 (356)
T 1u94_A 141 AVDVIVVDSVAA 152 (356)
T ss_dssp CCSEEEEECGGG
T ss_pred CCCEEEEcCHHH
Confidence 456999998754
No 142
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.29 E-value=0.12 Score=47.22 Aligned_cols=129 Identities=13% Similarity=0.016 Sum_probs=80.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCccccHHHHHHHHHhc-cCCceeEEEEeCCCC-CC
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLSTVMNVITIRCKEI-PSSEMLLIALDGLCD-LN 212 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~l~~~l~~~-l~~kr~LlVLDdvw~-~~ 212 (331)
.-.++.-++|..|.||++.+..+.+... ...|+....+.+... .+...+...+... +-+++-++|+|++.. ..
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~----~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN----TDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT----CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC----CCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 3456888999999999999988866321 112432222223322 3455565555432 456677889999876 55
Q ss_pred HHhHHHHHHhhcCCCCCCcEEEEecCC-------chHHhhc-cCCccccccccCCChHHHHHHHhhh
Q 020066 213 DDNLANLRLLVTNMDLVGFYVLVTTQS-------RSVATMM-KQTVPEAEHLIYFSESNSWSNLNCE 271 (331)
Q Consensus 213 ~~~~~~l~~~l~~~~~~gs~IIvTTR~-------~~va~~~-~~~~~~~~~l~~L~~~~s~~Lf~~~ 271 (331)
...++.|...+.... +++.+|++|.. ..+...+ .....+ ...+++.++-...+.+.
T Consensus 91 ~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~--~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 91 AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALANRSVQV--TCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE--EECCCCTTHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHhCceEE--EeeCCCHHHHHHHHHHH
Confidence 567888888876555 67777766543 2344333 234467 88888887777555554
No 143
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.27 E-value=0.0086 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+|+|+|..|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 144
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.27 E-value=0.011 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|.|.|+.|+||||+++.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998763
No 145
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.25 E-value=0.0089 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999998763
No 146
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.23 E-value=0.012 Score=48.92 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998764
No 147
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.20 E-value=0.026 Score=47.20 Aligned_cols=93 Identities=10% Similarity=-0.033 Sum_probs=47.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeC--CCCC---------c--c----ccHHHHHHHHHhccCCce
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVG--KILD---------L--S----TVMNVITIRCKEIPSSEM 200 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs--~~~~---------~--~----~~~~~l~~~l~~~l~~kr 200 (331)
.++.|+|..|+||||++..+........ . .+..+... ..+. . . .+. ..+.+.+.++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~----~~~~~~~~~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERP----EEMRKYIEEDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-----CCCEECC----CEECEEESSG----GGGGGGCCTTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeeccccccCcccEEecCCCceeeEEECCH----HHHHHHhcCCC
Confidence 4678999999999999954443221111 1 11111111 0000 0 0 111 12233344456
Q ss_pred eEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc
Q 020066 201 LLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR 240 (331)
Q Consensus 201 ~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~ 240 (331)
-+|++|.+...+.+..+.+..... .|..||+|.+..
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~----~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD----RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH----TTCEEEEEEESB
T ss_pred CEEEEECcccCCHHHHHHHHHHHH----CCCCEEEEeecc
Confidence 799999987653333333333333 356888887744
No 148
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.19 E-value=0.011 Score=49.12 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988763
No 149
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.18 E-value=0.0094 Score=48.58 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|.|.|+.|+||||+++.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998763
No 150
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.18 E-value=0.011 Score=49.27 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 151
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.18 E-value=0.011 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.16 E-value=0.0078 Score=49.68 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+.|.|+|+.|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 456889999999999999998763
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.10 E-value=0.011 Score=52.04 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|+|+.|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998763
No 154
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.07 E-value=0.013 Score=48.54 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 155
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.06 E-value=0.0085 Score=50.70 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|.|+|+.|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467889999999999999998764
No 156
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.05 E-value=0.012 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....|.|+|+.|+||||+++.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998763
No 157
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.04 E-value=0.012 Score=48.56 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..|.+.|+.|+||||+++.+.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 158
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.04 E-value=0.011 Score=49.23 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999998763
No 159
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.04 E-value=0.0088 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
++++|+|..|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999876
No 160
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.04 E-value=0.032 Score=50.73 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=30.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCC---------Cc-----CceEEEEeCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVS---------RF-----PRHIWFSVGKILD 180 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~ 180 (331)
-.++-|+|.+|+||||||..+..+..... .. ..++|++....++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~ 155 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR 155 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC
Confidence 46889999999999999988775422111 11 3567888777654
No 161
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.02 E-value=0.013 Score=51.84 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999998763
No 162
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.02 E-value=0.0083 Score=49.64 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|+.|+||||+|+.+...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 163
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.99 E-value=0.013 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999774
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.99 E-value=0.039 Score=50.36 Aligned_cols=44 Identities=9% Similarity=0.231 Sum_probs=30.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCC----cCceEEEEeCCCCC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSR----FPRHIWFSVGKILD 180 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~ 180 (331)
-.++.|+|.+|+||||||..+......... -..++|++....++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~ 154 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFR 154 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCC
Confidence 358889999999999999888754222111 13567888776643
No 165
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.96 E-value=0.013 Score=49.88 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-.+++|+|..|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999764
No 166
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.96 E-value=0.0089 Score=50.60 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|+|..|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998653
No 167
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.95 E-value=0.011 Score=48.44 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|+|+.|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999763
No 168
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.92 E-value=0.057 Score=50.04 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999875
No 169
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.90 E-value=0.013 Score=48.55 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|.|..|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999773
No 170
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.89 E-value=0.01 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998763
No 171
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.88 E-value=0.013 Score=51.15 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..+|+|+|..|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 172
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.85 E-value=0.014 Score=47.38 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 173
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.83 E-value=0.014 Score=48.34 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999888763
No 174
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.83 E-value=0.011 Score=48.63 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=16.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998763
No 175
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.82 E-value=0.011 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
++++|+|..|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999875
No 176
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.82 E-value=0.022 Score=48.50 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45788999999999999999888764
No 177
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.76 E-value=0.016 Score=50.74 Aligned_cols=26 Identities=8% Similarity=0.147 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|+|.|..|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999988763
No 178
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.75 E-value=0.031 Score=51.10 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....+|+|.|..|+|||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998865
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.75 E-value=0.017 Score=52.70 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....+++|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3457999999999999999998876
No 180
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.73 E-value=0.017 Score=48.50 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|+|+.|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998763
No 181
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.71 E-value=0.015 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+.|.|+|+.|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34779999999999999998763
No 182
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.71 E-value=0.015 Score=49.24 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 183
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.70 E-value=0.066 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5789999999999999999975
No 184
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.67 E-value=0.018 Score=48.65 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|+.|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998763
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.67 E-value=0.055 Score=46.73 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.....|+|+|..|+|||||...+....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 345678899999999999999988654
No 186
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.67 E-value=0.018 Score=48.65 Aligned_cols=26 Identities=15% Similarity=0.142 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|+|+|+.|+||||+++.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999988763
No 187
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.66 E-value=0.019 Score=50.11 Aligned_cols=24 Identities=8% Similarity=0.230 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|+|.|..|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998866
No 188
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.64 E-value=0.017 Score=48.67 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+|.|.|..|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 189
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.64 E-value=0.016 Score=50.94 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-.+|+|+|+.|+|||||++.+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 190
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.62 E-value=0.017 Score=48.04 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.8
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|+|.|..|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998774
No 191
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.58 E-value=0.021 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.474 Sum_probs=21.4
Q ss_pred CCcEEEEEEecCCchhHHHHHHHh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
....+|+|.|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 446789999999999999999886
No 192
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.56 E-value=0.014 Score=48.38 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 193
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.49 E-value=0.052 Score=50.77 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4789999999999999999975
No 194
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.49 E-value=0.12 Score=50.96 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999865
No 195
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.48 E-value=0.019 Score=52.30 Aligned_cols=23 Identities=9% Similarity=0.261 Sum_probs=19.6
Q ss_pred CCcEEEEEEecCCchhHHHHHHH
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRV 157 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v 157 (331)
++.+||+|.|-||+||||.+-.+
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNL 68 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNL 68 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHH
Confidence 46789999999999999988655
No 196
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.48 E-value=0.019 Score=49.05 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999998763
No 197
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.47 E-value=0.1 Score=51.75 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999875
No 198
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.47 E-value=0.021 Score=46.98 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+|.|+|+.|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999876
No 199
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.47 E-value=0.036 Score=51.95 Aligned_cols=35 Identities=11% Similarity=-0.050 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++++.|..- ..-..++|+|..|+|||+|+..+.+.
T Consensus 164 raID~l~Pi-grGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 164 RLIDLFAPI-GKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHSCC-BTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhhcccc-cCCceEEEecCCCCChhHHHHHHHHH
Confidence 566766532 22346789999999999999888763
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.46 E-value=0.025 Score=47.97 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+++.|+|.+|+|||||+..+...
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999888764
No 201
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.45 E-value=0.077 Score=52.57 Aligned_cols=23 Identities=9% Similarity=0.254 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999998865
No 202
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.42 E-value=0.021 Score=49.11 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998763
No 203
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.41 E-value=0.015 Score=49.84 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999876
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.40 E-value=0.02 Score=47.89 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+++.+.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 205
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.36 E-value=0.023 Score=48.92 Aligned_cols=26 Identities=12% Similarity=0.308 Sum_probs=23.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...++|.|.|.+|+||+|.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 206
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.36 E-value=0.021 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++|+|.+|+|||||+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998875
No 207
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.35 E-value=0.023 Score=48.29 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|.|+|+.|+||||+++.+...
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998763
No 208
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.33 E-value=0.024 Score=46.24 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-.+++++|..|+|||||.+.+..-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34468999999999999999999863
No 209
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.31 E-value=0.024 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999875
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.31 E-value=0.042 Score=50.88 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.9
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+....|.|+|+.|+||||+++.+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 34566788999999999999998866
No 211
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.27 E-value=0.022 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998663
No 212
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.26 E-value=0.024 Score=48.23 Aligned_cols=23 Identities=13% Similarity=0.169 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999864
No 213
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.22 E-value=0.082 Score=49.81 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=27.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCC----CcCceEEEEeCCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVS----RFPRHIWFSVGKILD 180 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~ 180 (331)
.++.|+|..|+|||||+..++-...... .-..++|++....++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~ 225 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR 225 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC
Confidence 5899999999999999987653211111 123467776655443
No 214
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.20 E-value=0.093 Score=52.12 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+.|+|..|+||||||+.+...
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 47889999999999999999873
No 215
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.20 E-value=0.023 Score=48.23 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-++++|+|..|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 4568899999999999999998763
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.19 E-value=0.037 Score=50.73 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+++|+|..|+|||||++.+..-
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999988753
No 217
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.17 E-value=0.041 Score=50.86 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+.+.+........+|+|+|.+|+|||||+..+..
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 33444443345678999999999999999988754
No 218
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.16 E-value=0.022 Score=48.73 Aligned_cols=24 Identities=8% Similarity=-0.009 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|.|.|+.|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998764
No 219
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.16 E-value=0.038 Score=48.18 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|.|.|+.|+||||+|+.+.+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35568999999999999999998763
No 220
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.13 E-value=0.024 Score=48.94 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.7
Q ss_pred cEEEEEEecCCchhHHHHHHHh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
-.+++|+|..|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3589999999999999999876
No 221
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.13 E-value=0.031 Score=50.67 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998876
No 222
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.13 E-value=0.025 Score=48.86 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999975
No 223
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.12 E-value=0.11 Score=43.87 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHhccCCc-eeEEEEeCCCCC---CHHhHHHHHHhhcCCCCCCcEEEEecCCch
Q 020066 191 RCKEIPSSE-MLLIALDGLCDL---NDDNLANLRLLVTNMDLVGFYVLVTTQSRS 241 (331)
Q Consensus 191 ~l~~~l~~k-r~LlVLDdvw~~---~~~~~~~l~~~l~~~~~~gs~IIvTTR~~~ 241 (331)
...+.+.+. -=|||||.+-.. .....+.+...+.... .+..||+|+|+..
T Consensus 111 ~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp-~~~~vIlTGr~ap 164 (196)
T 1g5t_A 111 HGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARP-GHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC-TTCEEEEECSSCC
T ss_pred HHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc-CCCEEEEECCCCc
Confidence 344555444 459999987320 1122344555544433 5678999999864
No 224
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.11 E-value=0.025 Score=47.99 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 225
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.07 E-value=0.025 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4799999999999999999875
No 226
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.04 E-value=0.027 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.6
Q ss_pred EEEEEecCCchhHHHHHHHhh
Q 020066 139 FIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+|+|.|..|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999866
No 227
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.01 E-value=0.027 Score=49.28 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999875
No 228
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.01 E-value=0.026 Score=48.66 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.+++|+|..|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999998763
No 229
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.00 E-value=0.022 Score=47.89 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+++|+|..|+|||||.+.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999988753
No 230
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.98 E-value=0.018 Score=49.65 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=15.7
Q ss_pred EEEEEEecCCchhHHHHHHHh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~ 158 (331)
.+++|+|..|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999988
No 231
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.97 E-value=0.021 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 232
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.97 E-value=0.16 Score=53.07 Aligned_cols=107 Identities=14% Similarity=0.056 Sum_probs=56.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc---ccC----------CCcCceEEEEeCCCCCcc-------ccHHHHHHHHHhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD---DIV----------SRFPRHIWFSVGKILDLS-------TVMNVITIRCKEI 195 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~----------~~F~~~~wv~vs~~~~~~-------~~~~~l~~~l~~~ 195 (331)
.-.+++|+|..|.|||||.+.+.--. +.. ..|+ .++..+.-..+.. ....++...+..
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d-~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~- 738 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVD-CILARVGAGDSQLKGVSTFMAEMLETASILRS- 738 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCS-EEEEECC---------CHHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHH-HHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh-
Confidence 34689999999999999999882100 000 1111 1121111111111 112222233322
Q ss_pred cCCceeEEEEeCCCCC-CHHhH----HHHHHhhcCCCCCCcEEEEecCCchHHhhcc
Q 020066 196 PSSEMLLIALDGLCDL-NDDNL----ANLRLLVTNMDLVGFYVLVTTQSRSVATMMK 247 (331)
Q Consensus 196 l~~kr~LlVLDdvw~~-~~~~~----~~l~~~l~~~~~~gs~IIvTTR~~~va~~~~ 247 (331)
..++-||+||..-.. +..+- ..+...+.. . .|+.+|++|.+.+++..+.
T Consensus 739 -a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~-~g~~vl~aTH~~el~~lad 792 (934)
T 3thx_A 739 -ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIAT-K-IGAFCMFATHFHELTALAN 792 (934)
T ss_dssp -CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-T-TCCEEEEEESCGGGGGGGG
T ss_pred -ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-c-CCCEEEEEcCcHHHHHHhc
Confidence 466889999988653 22222 223334432 2 4789999999988776543
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.95 E-value=0.054 Score=52.40 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++|+|..|+|||||++.+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHH
Confidence 457999999999999999998875
No 234
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.91 E-value=0.026 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.90 E-value=0.032 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++|+|..|+|||||++.+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356999999999999999998876
No 236
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.86 E-value=0.005 Score=63.47 Aligned_cols=128 Identities=10% Similarity=0.101 Sum_probs=63.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc--ccHHHHHHHHHhccCCceeEEEEeCCCCC----
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS--TVMNVITIRCKEIPSSEMLLIALDGLCDL---- 211 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~l~~~l~~~l~~kr~LlVLDdvw~~---- 211 (331)
..+.++|.+|+||||||+.+.+.. ...|- .+..+.-.+.. .....+...+...-...+++|+||++...
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~--~~~~i---~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r 586 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC--QANFI---SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKAR 586 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH--TCCCC---CCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTT
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh--CCCEE---EEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhc
Confidence 457799999999999999998743 22221 11111111110 11122222222222233679999997531
Q ss_pred ----C--HHh----HHHHHHhhcCCCC-CCcEEEEecCCchHH-hhc-c--CC-ccccccccCCChHHHHHHHhhhC
Q 020066 212 ----N--DDN----LANLRLLVTNMDL-VGFYVLVTTQSRSVA-TMM-K--QT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 212 ----~--~~~----~~~l~~~l~~~~~-~gs~IIvTTR~~~va-~~~-~--~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
. ... ...++..+..... .+..||.||...+.. ..+ . .. ..+ .+...+.++-..+|+.+.
T Consensus 587 ~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i--~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 587 GGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI--YIPLPDEKSRVAILKANL 661 (806)
T ss_dssp TTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCC--CCCCCCCSHHHHHTTTTT
T ss_pred cCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCcee--ecCCCCHHHHHHHHHHHh
Confidence 0 011 2333333332110 233456666543321 111 1 11 245 577788888888888765
No 237
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.86 E-value=0.042 Score=49.04 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999875
No 238
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.79 E-value=0.031 Score=46.36 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++.|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999888764
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.79 E-value=0.051 Score=48.22 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 240
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.76 E-value=0.03 Score=49.58 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 241
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.76 E-value=0.084 Score=49.05 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCcHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 82 VMRIRERLVRSMDSLKKIVAGQDVESGDLSHRSAETELEGSVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 82 ~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~vG~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
+..+..++.+++++++.+...+..... . .. ..+.++|+|+|.+|+|||||...+....
T Consensus 146 ~~~~~~~i~~l~~~l~~~~~~r~~~r~---~-----------------r~--~~~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 146 IKFYKRRINKLMKELESIKIFKEKSIE---S-----------------NK--RNNIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------------------------------CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---h-----------------hh--hcCCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 556777777777777776543211000 0 00 2456789999999999999999887643
No 242
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.75 E-value=0.034 Score=47.44 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.72 E-value=0.035 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++++|.+|+||||++..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988865
No 244
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.71 E-value=0.035 Score=47.16 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998763
No 245
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.67 E-value=0.032 Score=48.66 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 246
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.66 E-value=0.11 Score=51.39 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999999865
No 247
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.63 E-value=0.07 Score=48.69 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....++.|+|.+|+||||++..+..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999988765
No 248
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.62 E-value=0.033 Score=49.14 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999865
No 249
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.61 E-value=0.035 Score=47.65 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=19.4
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 250
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.60 E-value=0.06 Score=51.28 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.3
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...++|.++|.+|+||||++..+..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999977763
No 251
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.59 E-value=0.037 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999875
No 252
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.57 E-value=0.035 Score=48.76 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 253
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.53 E-value=0.038 Score=49.43 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999876
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.52 E-value=0.035 Score=49.23 Aligned_cols=22 Identities=14% Similarity=0.324 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 5799999999999999999875
No 255
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.47 E-value=0.047 Score=43.30 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
+-|.++|.+|+|||||...+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999887653
No 256
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.47 E-value=0.039 Score=50.79 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|+|.|..|+||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999988764
No 257
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.44 E-value=0.042 Score=45.66 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...++|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999988764
No 258
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.44 E-value=0.055 Score=43.63 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999988764
No 259
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.43 E-value=0.038 Score=49.08 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999987
No 260
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.41 E-value=0.031 Score=47.96 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999976
No 261
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.38 E-value=0.04 Score=47.96 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..+|.|.|+.|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 262
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.38 E-value=0.038 Score=49.20 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999975
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.37 E-value=0.044 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+++|+|..|+|||||+..+..-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 3579999999999999999988763
No 264
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.35 E-value=0.047 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...++.|+|.+|+||||++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 457999999999999999988875
No 265
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.35 E-value=0.042 Score=52.01 Aligned_cols=26 Identities=12% Similarity=0.261 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....+|.|+|+.|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998764
No 266
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.35 E-value=0.05 Score=47.45 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...++.+.|.||+|||||+..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 467888999999999999988864
No 267
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.34 E-value=0.039 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 268
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.34 E-value=0.22 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|||..|+|||||++.+..
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTT
T ss_pred cEEEEEecCCCcHHHHHHHhcc
Confidence 5789999999999999999875
No 269
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=93.33 E-value=0.075 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-..++|+|..|+|||||++.+..
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 35799999999999999998865
No 270
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.32 E-value=1.3 Score=38.92 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.....|+|+|..|+|||||...+....
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 346689999999999999999987653
No 271
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.31 E-value=0.042 Score=47.41 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|.|.|+.|+||||+|+.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999764
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.31 E-value=0.027 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=18.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|+|.|..|+||||+|+.+.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998866
No 273
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.30 E-value=0.056 Score=42.75 Aligned_cols=23 Identities=13% Similarity=0.335 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|.++|.+|+|||||...+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47799999999999999887653
No 274
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.30 E-value=0.04 Score=48.88 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4799999999999999999875
No 275
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.26 E-value=0.092 Score=50.42 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=25.6
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
.++|+|..|+|||||+..+..+.... +-+..+++.+.+.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGer 191 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGER 191 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccC
Confidence 57899999999999999887643211 1123445555443
No 276
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.26 E-value=0.07 Score=43.07 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=21.7
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|+|..|+|||||...+.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999988764
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.23 E-value=0.042 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999875
No 278
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.22 E-value=0.065 Score=43.95 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|+|.+|+|||||...+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45567889999999999999988764
No 279
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.22 E-value=0.043 Score=47.32 Aligned_cols=25 Identities=16% Similarity=-0.019 Sum_probs=22.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998773
No 280
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.19 E-value=0.042 Score=49.13 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999875
No 281
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.18 E-value=0.044 Score=48.26 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999976
No 282
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.17 E-value=0.041 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4779999999999999988763
No 283
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.13 E-value=0.2 Score=52.12 Aligned_cols=106 Identities=15% Similarity=0.081 Sum_probs=55.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc---ccCC----------CcCceEEEEe--CCCCCcc-----ccHHHHHHHHHhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD---DIVS----------RFPRHIWFSV--GKILDLS-----TVMNVITIRCKEI 195 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~---~~~~----------~F~~~~wv~v--s~~~~~~-----~~~~~l~~~l~~~ 195 (331)
.-.+++|+|..|.|||||.+.+..-. +... .++ .++..+ .+..... ....++...+..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d-~i~~~ig~~d~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD-GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS-EEEEEC----------CCHHHHHHHHHHHHHH-
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH-HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-
Confidence 34689999999999999999874210 1100 011 111111 1111100 122223333332
Q ss_pred cCCceeEEEEeCCCCC-CHHhHH----HHHHhhcCCCCCCcEEEEecCCchHHhhc
Q 020066 196 PSSEMLLIALDGLCDL-NDDNLA----NLRLLVTNMDLVGFYVLVTTQSRSVATMM 246 (331)
Q Consensus 196 l~~kr~LlVLDdvw~~-~~~~~~----~l~~~l~~~~~~gs~IIvTTR~~~va~~~ 246 (331)
..++-||+||..-.. +..+-. .+...+.. . .|+.||++|.+.+++..+
T Consensus 750 -a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~-~-~g~tvl~vTH~~el~~l~ 802 (918)
T 3thx_B 750 -ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIR-D-VKSLTLFVTHYPPVCELE 802 (918)
T ss_dssp -CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHH-T-TCCEEEEECSCGGGGGHH
T ss_pred -ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHH-h-cCCeEEEEeCcHHHHHHH
Confidence 466889999987653 222111 33333322 2 578999999998876544
No 284
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.09 E-value=0.047 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.++.|+|..|+|||||++.+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5888999999999999988874
No 285
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.08 E-value=0.42 Score=45.61 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+.|.|.+|+||||++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 7889999999999999888764
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.04 E-value=0.083 Score=50.41 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|.++|.+|+||||++..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 468999999999999999977764
No 287
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.01 E-value=0.046 Score=45.59 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...++|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999998765
No 288
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.97 E-value=0.078 Score=43.60 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
....|.|+|.+|+|||||...+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999998887653
No 289
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.95 E-value=0.054 Score=46.78 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998875
No 290
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.94 E-value=0.069 Score=42.69 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|.+|+|||||...+.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999998887653
No 291
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.91 E-value=0.054 Score=49.51 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++|.|+|+.|+||||||..+...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998874
No 292
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.89 E-value=0.2 Score=48.06 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI 178 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 178 (331)
+.++.|..- ..=..++|+|..|+|||+|++.+.++. .+.+-+..+++.+.+.
T Consensus 142 r~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER 193 (482)
T 2ck3_D 142 KVVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGER 193 (482)
T ss_dssp HHHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCC
T ss_pred EEEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCc
Confidence 455555421 122468899999999999998887642 1223344566655544
No 293
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.87 E-value=0.082 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|.++|.+|+||||++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999987763
No 294
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.87 E-value=0.051 Score=46.29 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+|.|.|.+|+||+|+|+.+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999874
No 295
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.85 E-value=0.055 Score=43.15 Aligned_cols=23 Identities=13% Similarity=0.144 Sum_probs=19.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.|+|.+|+|||||...+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45779999999999999998764
No 296
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.84 E-value=0.064 Score=46.44 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|.|.|..|+||||+++.+.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 297
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.84 E-value=0.057 Score=49.12 Aligned_cols=25 Identities=12% Similarity=0.307 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..+++.|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999998854
No 298
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.78 E-value=0.059 Score=49.55 Aligned_cols=24 Identities=13% Similarity=0.355 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++|.|+|+.|+|||||+..+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.74 E-value=0.056 Score=49.05 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+.-.+++|+|..|+|||||++.+..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhh
Confidence 3446899999999999999999875
No 300
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.74 E-value=0.072 Score=42.27 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.-|.++|.+|+|||||...+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999887653
No 301
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.73 E-value=0.07 Score=43.77 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=20.4
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
--|.++|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357799999999999999987653
No 302
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.70 E-value=0.25 Score=47.62 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=28.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCC
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKIL 179 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 179 (331)
..++|+|-.|+|||+|+..+.++. .+.+-+..+++.+.+..
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~ 206 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERT 206 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCS
T ss_pred CeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCc
Confidence 458899999999999998877641 12234566676665543
No 303
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.69 E-value=0.061 Score=47.82 Aligned_cols=21 Identities=29% Similarity=0.456 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhh
Q 020066 139 FIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.++|+|..|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999999875
No 304
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.68 E-value=0.07 Score=43.65 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|+++|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999988763
No 305
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.66 E-value=0.17 Score=48.92 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=26.5
Q ss_pred EEEEEEecCCchhHHHH-HHHhhccccCCCcCc-eEEEEeCCCCC
Q 020066 138 RFIHIVGVSGTEVTHIA-HRVFMDDDIVSRFPR-HIWFSVGKILD 180 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~ 180 (331)
..++|+|-.|+|||+|| ..+.+.. .-+. .+++-+.+..+
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~ 216 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKS 216 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcH
Confidence 35789999999999995 5777743 2343 35666665543
No 306
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.64 E-value=0.074 Score=42.31 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|.|+|..|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988764
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.62 E-value=0.058 Score=47.83 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999975
No 308
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.62 E-value=0.065 Score=46.32 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.-.+|.|.|..|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999998753
No 309
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.61 E-value=0.058 Score=43.37 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 345789999999999999988764
No 310
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.60 E-value=0.065 Score=48.15 Aligned_cols=26 Identities=8% Similarity=0.129 Sum_probs=20.6
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....++|+|+|-||+||||+|..+..
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCceEEEEECCCCccHHHHHHHHHH
Confidence 44678999999999999999977654
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.56 E-value=0.063 Score=47.63 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.++.|+|.+|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5889999999999999988764
No 312
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.55 E-value=0.092 Score=48.43 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-+.++|.+|+|||++|+.+++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999999874
No 313
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.52 E-value=0.063 Score=47.96 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.++.|+|..|+|||||+..+...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358899999999999999887653
No 314
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.47 E-value=0.082 Score=43.51 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|+|..|+|||||...+.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999988765
No 315
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.47 E-value=0.086 Score=43.18 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
....|.|+|..|+|||||...+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999887653
No 316
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.46 E-value=0.07 Score=50.98 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=20.6
Q ss_pred EEEEEecCCchhHHHHHHHhhcccc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDI 163 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~ 163 (331)
.++|.|-.|+|||+|+..+.+....
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 3678999999999999988885443
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.45 E-value=0.087 Score=42.02 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|.++|.+|+|||||...+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4679999999999999888764
No 318
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.41 E-value=0.071 Score=48.03 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++++|.+|+||||++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988875
No 319
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.40 E-value=0.066 Score=48.17 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999976
No 320
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.40 E-value=0.063 Score=42.81 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=18.9
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|.++|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4679999999999999988653
No 321
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.39 E-value=0.17 Score=48.78 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHH-HHHhhccccCCCcCc-eEEEEeCCCC
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIA-HRVFMDDDIVSRFPR-HIWFSVGKIL 179 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~ 179 (331)
+.++.|..- ..=..++|+|-.|+|||+|| ..+.+.. +-+. .+++.+.+..
T Consensus 151 raID~l~Pi-grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~ 202 (502)
T 2qe7_A 151 KAIDSMIPI-GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQ 202 (502)
T ss_dssp HHHHHSSCC-BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCH
T ss_pred eeccccccc-ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcc
Confidence 344555422 12235789999999999995 5777743 2342 3566665544
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.36 E-value=0.074 Score=43.64 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=19.1
Q ss_pred EEEEEecCCchhHHHHHHHhh
Q 020066 139 FIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+.+|+|..|+|||||...++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999999864
No 323
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.34 E-value=0.07 Score=42.53 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|.++|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999998887653
No 324
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.33 E-value=0.07 Score=42.59 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
--|.|+|..|+|||||...+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999998887653
No 325
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.33 E-value=0.088 Score=41.70 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|.|+|..|+|||||...+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999998887643
No 326
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.31 E-value=0.12 Score=41.64 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...-|.|+|..|+|||||...+.+.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4456889999999999999888765
No 327
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.26 E-value=0.091 Score=43.00 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=20.6
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|.+|+|||||...+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457799999999999999887653
No 328
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.25 E-value=0.08 Score=42.71 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.1
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
+...-|.|+|..|+|||||...+.+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345567899999999999999987653
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.24 E-value=0.12 Score=50.22 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=19.9
Q ss_pred CCcEEEEEEecCCchhHHHHHHHh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
...++|.|+|.+|+||||++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346799999999999999998876
No 330
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.23 E-value=0.074 Score=43.29 Aligned_cols=23 Identities=9% Similarity=0.044 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 331
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.22 E-value=0.076 Score=48.34 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++|.|.|..|+||||||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358899999999999999998763
No 332
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.20 E-value=0.069 Score=43.81 Aligned_cols=23 Identities=13% Similarity=-0.065 Sum_probs=19.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.--|.|+|.+|+|||||.+.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999987765
No 333
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.18 E-value=0.091 Score=42.71 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..--|.|+|..|+|||||...+.+..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34467899999999999999888653
No 334
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.16 E-value=0.097 Score=42.45 Aligned_cols=25 Identities=16% Similarity=0.213 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999998887543
No 335
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.15 E-value=0.12 Score=46.54 Aligned_cols=23 Identities=35% Similarity=0.389 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++.++|.+|+||||++..+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999988764
No 336
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.12 E-value=0.74 Score=42.27 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=22.6
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++.|+|+|..|+|||||...+...
T Consensus 32 ~~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 32 DSLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred ccCCEEEEECCCCCcHHHHHHHHhCC
Confidence 35678999999999999999988764
No 337
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.10 E-value=0.085 Score=44.41 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.....|.++|.+|+|||||...+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999998887653
No 338
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.08 E-value=0.076 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4789999999999999999975
No 339
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.08 E-value=0.095 Score=42.67 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
--|.|+|..|+|||||...+.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 357799999999999999987654
No 340
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.07 E-value=0.082 Score=42.15 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
--|.|+|..|+|||||...+....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 357899999999999998887643
No 341
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.05 E-value=0.33 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..|+|||..|+|||||++.++.
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4699999999999999999975
No 342
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.05 E-value=0.057 Score=47.48 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=21.9
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|.|..|+||||+++.+.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999988763
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.01 E-value=0.082 Score=48.95 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999998875
No 344
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.01 E-value=0.084 Score=43.09 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.7
Q ss_pred EEEEEecCCchhHHHHHHHhhcc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
-|.|+|.+|+|||||...+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999998887653
No 345
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=91.99 E-value=0.099 Score=42.18 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|..|+|||||...+....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 34567899999999999998887653
No 346
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.99 E-value=0.13 Score=48.08 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+.-.+++|+|..|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4456899999999999999999986
No 347
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.95 E-value=0.061 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|.|+|.+|+||||++..+..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999977765
No 348
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.93 E-value=0.082 Score=42.60 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 446789999999999999888764
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.93 E-value=0.087 Score=42.49 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.|+|.+|+|||||...+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999888754
No 350
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.92 E-value=0.078 Score=42.17 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|.++|.+|+|||||...+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 679999999999999888754
No 351
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.92 E-value=0.083 Score=42.05 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.|+|..|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888764
No 352
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.92 E-value=0.12 Score=41.62 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.|+|..|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 353
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.90 E-value=0.1 Score=41.99 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|..|+|||||...+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999887654
No 354
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.90 E-value=0.2 Score=41.00 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+.+ +. .....-|.|+|..|+|||||...+.+.
T Consensus 7 ~~~~-~~--~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 7 RIWR-LF--NHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHH-HH--TTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHH-hc--CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3445 44 344566789999999999999988754
No 355
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.86 E-value=0.11 Score=42.17 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4567899999999999999887653
No 356
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.86 E-value=0.077 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=20.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.++|.+|+|||||...+.+.
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999988753
No 357
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.79 E-value=0.11 Score=42.85 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=19.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345779999999999999777654
No 358
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.79 E-value=0.078 Score=42.92 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.++|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 34779999999999999888764
No 359
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.79 E-value=0.11 Score=42.84 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|.+|+|||||...+.+..
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCC
Confidence 3457799999999999998887643
No 360
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.77 E-value=0.11 Score=47.25 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..++|.|+|..|+||||||..+...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568899999999999999998763
No 361
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.77 E-value=0.11 Score=42.25 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999887643
No 362
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.76 E-value=0.08 Score=54.29 Aligned_cols=126 Identities=10% Similarity=0.091 Sum_probs=61.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCC--CCc--cccHHHHHHHHHhccCCceeEEEEeCCCCCC-
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKI--LDL--STVMNVITIRCKEIPSSEMLLIALDGLCDLN- 212 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~--~~~~~~l~~~l~~~l~~kr~LlVLDdvw~~~- 212 (331)
+-+-++|.+|+|||.||+++.+.. ... ++.++.+ .+. ......+...+...-+..+++|++|++..--
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~ 584 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC-
T ss_pred ceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhh
Confidence 346689999999999999999843 212 2222211 110 0333444444444446679999999986420
Q ss_pred ---------HH----hHHHHHHhhcCCCC-CCcEEEEecCCchHH---h-hccC-CccccccccCCChHHHHHHHhhhC
Q 020066 213 ---------DD----NLANLRLLVTNMDL-VGFYVLVTTQSRSVA---T-MMKQ-TVPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 213 ---------~~----~~~~l~~~l~~~~~-~gs~IIvTTR~~~va---~-~~~~-~~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
.. ....|+..+..-.. .+--||-||...+.. - .-+. ...+ .+..-+.++-.++|+.+.
T Consensus 585 ~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i--~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 585 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLI--YIPLPDEKSRVAILKANL 661 (806)
T ss_dssp -------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEE--EC-----CHHHHTTTTTS
T ss_pred ccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEE--EECCcCHHHHHHHHHHHh
Confidence 01 12334444443220 333344466544421 1 1122 2344 566556666666766543
No 363
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.75 E-value=0.097 Score=45.83 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.7
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788889999999999977654
No 364
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.75 E-value=0.1 Score=41.61 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=18.9
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
--|.|+|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999988854
No 365
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.72 E-value=0.11 Score=42.17 Aligned_cols=23 Identities=13% Similarity=-0.019 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.++|.+|+|||||...+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999888754
No 366
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.71 E-value=0.12 Score=42.52 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|..|+|||||...+.+..
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999999888654
No 367
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.71 E-value=0.091 Score=42.01 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+....
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999887643
No 368
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.68 E-value=0.094 Score=43.36 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|.++|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999888764
No 369
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.67 E-value=0.11 Score=42.11 Aligned_cols=25 Identities=16% Similarity=0.383 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 3467899999999999999887654
No 370
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=91.66 E-value=0.19 Score=48.54 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=41.8
Q ss_pred EEEEEecCCchhHHHH-HHHhhccccCCCcCc-eEEEEeCCCCCcc----------------------------------
Q 020066 139 FIHIVGVSGTEVTHIA-HRVFMDDDIVSRFPR-HIWFSVGKILDLS---------------------------------- 182 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~~~~---------------------------------- 182 (331)
.++|+|-.|+|||+|| ..+.+.. . -+. .+++.+.+..+..
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~--~--~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~ 240 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQ--G--QNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLAP 240 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCC--T--TTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHHH
T ss_pred EEEEecCCCCCccHHHHHHHHHhh--c--CCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHHH
Confidence 4789999999999995 5777743 1 332 3455555443221
Q ss_pred ccHHHHHHHHHhccCCceeEEEEeCCCC
Q 020066 183 TVMNVITIRCKEIPSSEMLLIALDGLCD 210 (331)
Q Consensus 183 ~~~~~l~~~l~~~l~~kr~LlVLDdvw~ 210 (331)
..--.+.+.++. +++..||++||+-.
T Consensus 241 ~~a~tiAEyfrd--~G~dVLli~Dsltr 266 (507)
T 1fx0_A 241 YTGAALAEYFMY--RERHTLIIYDDLSK 266 (507)
T ss_dssp HHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred HHHHHHHHHHHH--cCCcEEEEEecHHH
Confidence 111223444544 58999999999754
No 371
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.66 E-value=0.12 Score=42.02 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....-|.|+|..|+|||||...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567889999999999999888753
No 372
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.66 E-value=0.23 Score=53.80 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 1060 e~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A 1060 QTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp SEEEEECSSSTTHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999999975
No 373
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.63 E-value=0.17 Score=46.45 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.....+++|+|.+|+|||||+..+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 45678899999999999999988753
No 374
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.61 E-value=0.093 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=18.7
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.++.|.|.+|+|||||+..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999876643
No 375
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=91.60 E-value=0.19 Score=48.58 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHH-HHHhhcccc----CCCcC-ceEEEEeCCCCC
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIA-HRVFMDDDI----VSRFP-RHIWFSVGKILD 180 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~vs~~~~ 180 (331)
+.++.|..- ..=..++|+|-.|+|||+|| ..+.|.... .++-+ ..+++-+.+..+
T Consensus 151 raID~l~Pi-grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~ 211 (510)
T 2ck3_A 151 KAVDSLVPI-GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS 211 (510)
T ss_dssp HHHHHHSCC-BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH
T ss_pred eeecccccc-ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH
Confidence 345555432 12235789999999999995 566664321 12234 355666665543
No 376
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.59 E-value=0.11 Score=46.26 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.++|+|.|-||+||||+|..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 46788899999999999977654
No 377
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.58 E-value=0.12 Score=41.72 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|.+|+|||||...+....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3457899999999999998887653
No 378
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.58 E-value=0.085 Score=48.75 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4789999999999999999975
No 379
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=91.57 E-value=0.21 Score=43.95 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=22.6
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
......|.++|.+|+|||||...+....
T Consensus 36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 36 DVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3345678899999999999999887654
No 380
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.50 E-value=0.068 Score=44.70 Aligned_cols=25 Identities=12% Similarity=0.005 Sum_probs=21.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-..++|+|..|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999888754
No 381
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.49 E-value=0.17 Score=46.37 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=22.3
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhh
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-....+++|+|..|+|||||.+.+..
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999998864
No 382
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.47 E-value=0.098 Score=42.34 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
--|.|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35779999999999999888764
No 383
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=91.47 E-value=3 Score=38.45 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=64.2
Q ss_pred EEEEecCCchhHHHHHHHhhccccCCCcCceEEEEe--CCCCCccccHHHHHHHHHhccCC----------------cee
Q 020066 140 IHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSV--GKILDLSTVMNVITIRCKEIPSS----------------EML 201 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~l~~~l~~~l~~----------------kr~ 201 (331)
+-|.|..|+||+++|+.++....-... ++.+ +.... +.+...+..+-++ ..-
T Consensus 155 vli~GesGtGKe~lAr~ih~~s~r~~~-----fv~vnc~~~~~-----~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~g 224 (368)
T 3dzd_A 155 VLITGESGTGKEIVARLIHRYSGRKGA-----FVDLNCASIPQ-----ELAESELFGHEKGAFTGALTRKKGKLELADQG 224 (368)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCSC-----EEEEESSSSCT-----TTHHHHHHEECSCSSSSCCCCEECHHHHTTTS
T ss_pred heEEeCCCchHHHHHHHHHHhccccCC-----cEEEEcccCCh-----HHHHHHhcCccccccCCcccccCChHhhcCCC
Confidence 458899999999999999874322222 3322 21111 1112222211110 112
Q ss_pred EEEEeCCCCCCHHhHHHHHHhhcCC------CC----CCcEEEEecCCchHHhhc--cC----------CccccccccCC
Q 020066 202 LIALDGLCDLNDDNLANLRLLVTNM------DL----VGFYVLVTTQSRSVATMM--KQ----------TVPEAEHLIYF 259 (331)
Q Consensus 202 LlVLDdvw~~~~~~~~~l~~~l~~~------~~----~gs~IIvTTR~~~va~~~--~~----------~~~~~~~l~~L 259 (331)
-|+||+|.+........|...+..+ .. ...|||.+|...- ...+ +. ...+ .++||
T Consensus 225 tlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l-~~~v~~g~fr~dL~~rl~~~~i--~lPpL 301 (368)
T 3dzd_A 225 TLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNL-EEEIKKGNFREDLYYRLSVFQI--YLPPL 301 (368)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCH-HHHHHTTSSCHHHHHHHTSEEE--ECCCG
T ss_pred eEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCH-HHHHHcCCccHHHHHHhCCeEE--eCCCh
Confidence 5899999988777777777766432 10 1346777665332 2211 11 1134 68888
Q ss_pred Ch--HHHHHHHhh
Q 020066 260 SE--SNSWSNLNC 270 (331)
Q Consensus 260 ~~--~~s~~Lf~~ 270 (331)
.+ +|-..|+.+
T Consensus 302 reR~~Di~~l~~~ 314 (368)
T 3dzd_A 302 RERGKDVILLAEY 314 (368)
T ss_dssp GGSTTHHHHHHHH
T ss_pred hhchhhHHHHHHH
Confidence 87 676665544
No 384
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.46 E-value=0.096 Score=51.47 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.++.|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 368999999999999999999864
No 385
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.44 E-value=0.097 Score=43.09 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999998887643
No 386
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.44 E-value=0.37 Score=47.04 Aligned_cols=35 Identities=17% Similarity=0.143 Sum_probs=24.7
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++++.|..- ..=..++|.|..|+|||+|++.+.+.
T Consensus 216 rvID~l~Pi-gkGqr~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 216 RVIDTFFPQ-AKGGTAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp HHHHHHSCE-ETTCEEEECSCCSHHHHHHHHHHHHH
T ss_pred chhhccCCc-ccCCeEEeecCCCCCHHHHHHHHHhc
Confidence 445555421 12245789999999999999998764
No 387
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.42 E-value=0.095 Score=48.69 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5789999999999999999875
No 388
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.41 E-value=0.083 Score=44.75 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+|.|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998865
No 389
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.14 Score=41.37 Aligned_cols=25 Identities=24% Similarity=0.145 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.++|..|+|||||...+.+..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3467899999999999998887654
No 390
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=91.41 E-value=0.099 Score=43.36 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=19.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..-|.++|.+|+|||||.+.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44577999999999999987766
No 391
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.41 E-value=0.11 Score=47.81 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999988875
No 392
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.37 E-value=0.13 Score=43.81 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|+|.+|+|||||...+...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45567889999999999999988764
No 393
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.36 E-value=0.4 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..++|+|..|+|||||++.+..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g 438 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQR 438 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999865
No 394
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.35 E-value=0.11 Score=42.67 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=22.3
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.....|.|+|..|+|||||...+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 456678899999999999999887654
No 395
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.13 Score=42.58 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|.+|+|||||...+.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4457799999999999998887653
No 396
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.11 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999999887653
No 397
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.32 E-value=0.098 Score=48.79 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4789999999999999999875
No 398
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.31 E-value=0.1 Score=43.34 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|.+|+|||||...+....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 34568899999999999998887653
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.29 E-value=0.13 Score=42.66 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|.+|+|||||...+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34567899999999999999887653
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.29 E-value=0.077 Score=49.12 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5789999999999999999875
No 401
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.28 E-value=0.17 Score=41.81 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|..|+|||||...+....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 34568899999999999998887653
No 402
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.28 E-value=2.1 Score=39.12 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|+|+|..|+|||||...+...
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999988764
No 403
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.26 E-value=0.11 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.1
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+|.++|+.|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999999865
No 404
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.24 E-value=0.1 Score=48.69 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5789999999999999999875
No 405
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.22 E-value=0.14 Score=42.02 Aligned_cols=25 Identities=12% Similarity=0.105 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4467899999999999999887643
No 406
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.20 E-value=0.088 Score=43.85 Aligned_cols=24 Identities=21% Similarity=0.150 Sum_probs=20.2
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...-|.|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 445688999999999999998853
No 407
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.17 E-value=0.1 Score=49.40 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=21.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999986
No 408
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.11 E-value=0.1 Score=47.06 Aligned_cols=20 Identities=25% Similarity=0.559 Sum_probs=18.1
Q ss_pred EEEEecCCchhHHHHHHHhh
Q 020066 140 IHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~ 159 (331)
|+|+|..|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999775
No 409
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.08 E-value=0.15 Score=41.81 Aligned_cols=25 Identities=20% Similarity=0.159 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|..|+|||||...+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3457899999999999999988753
No 410
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.07 E-value=0.12 Score=43.25 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...|.|+|.+|+|||||...+....
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4467899999999999998887653
No 411
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.07 E-value=0.16 Score=41.81 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346789999999999999888764
No 412
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.07 E-value=0.14 Score=42.99 Aligned_cols=26 Identities=27% Similarity=0.110 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|.+|+|||||...+....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34567899999999999999887653
No 413
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.07 E-value=0.11 Score=43.02 Aligned_cols=25 Identities=28% Similarity=0.192 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|.+|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3467899999999999998887653
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.05 E-value=0.15 Score=42.06 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=21.0
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.++|..|+|||||...+.+..
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999999987754
No 415
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.05 E-value=0.31 Score=47.01 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=30.2
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHH-HHHhhccccCCCcCc-eEEEEeCCCC
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIA-HRVFMDDDIVSRFPR-HIWFSVGKIL 179 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~-~~wv~vs~~~ 179 (331)
+.++.|..- ..=..++|.|-.|+|||+|+ ..+.|.. +-+. ++++-+.+..
T Consensus 151 kaID~l~Pi-grGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~ 202 (513)
T 3oaa_A 151 KAVDSMIPI-GRGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKA 202 (513)
T ss_dssp HHHHHHSCC-BTTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCH
T ss_pred eeecccccc-ccCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCCh
Confidence 345555432 11235789999999999996 5676631 2232 4566666553
No 416
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.04 E-value=0.11 Score=42.75 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|..|+|||||...+.+..
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3457899999999999999887653
No 417
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.04 E-value=0.11 Score=42.30 Aligned_cols=27 Identities=15% Similarity=0.181 Sum_probs=22.0
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
....-|.|+|..|+|||||...+.+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345667899999999999999988654
No 418
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.95 E-value=0.27 Score=43.10 Aligned_cols=27 Identities=7% Similarity=0.180 Sum_probs=22.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.....|+++|..|+|||||...+....
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345678899999999999998887653
No 419
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.85 E-value=0.13 Score=48.32 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
++|.|.|..|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5789999999999999998876
No 420
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.85 E-value=0.13 Score=43.20 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...-|.|+|..|+|||||...+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988764
No 421
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.84 E-value=0.13 Score=41.93 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|..|+|||||...+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999988764
No 422
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.84 E-value=0.12 Score=42.34 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=21.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999998887653
No 423
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=90.83 E-value=0.12 Score=43.68 Aligned_cols=27 Identities=11% Similarity=0.049 Sum_probs=22.7
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.....|.|+|..|+|||||...+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 345678899999999999999988764
No 424
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.78 E-value=0.12 Score=42.98 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=20.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..--|.|+|..|+|||||...+.+.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999888754
No 425
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.77 E-value=0.12 Score=48.40 Aligned_cols=22 Identities=9% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 5799999999999999999875
No 426
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.76 E-value=0.12 Score=42.87 Aligned_cols=25 Identities=12% Similarity=-0.024 Sum_probs=19.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4457799999999999998887643
No 427
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.74 E-value=0.15 Score=42.58 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=20.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..--|.++|..|+|||||...+.+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 34456799999999999998887643
No 428
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.74 E-value=0.11 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4788999999999999999876
No 429
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.74 E-value=0.12 Score=42.44 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3457899999999999998887643
No 430
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.72 E-value=0.13 Score=42.22 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...-|.|+|..|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999888754
No 431
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.71 E-value=0.13 Score=42.16 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.5
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.-|.|+|..|+|||||...+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 467899999999999999887653
No 432
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.67 E-value=0.38 Score=55.55 Aligned_cols=97 Identities=16% Similarity=0.137 Sum_probs=64.5
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEE-EEeCCCCCccccHHHHHHHHHhc-cCCc
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIW-FSVGKILDLSTVMNVITIRCKEI-PSSE 199 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~l~~~l~~~-l~~k 199 (331)
...+|.+.|.. + ..=+-+||.||+||++|++.+..-.. ..++ +.+++.++..+-.+.+...+++. .+++
T Consensus 1597 Hi~RI~Ril~~--p-~G~~LLvGvgGsGkqSltrLaa~i~~------~~~fqi~~~~~Y~~~~f~eDLk~l~~~aG~~~~ 1667 (2695)
T 4akg_A 1597 HILRIDRALKQ--V-QGHMMLIGASRTGKTILTRFVAWLNG------LKIVQPKIHRHSNLSDFDMILKKAISDCSLKES 1667 (2695)
T ss_dssp HHHHHHHHHHS--S-SEEEEEECTTTSCHHHHHHHHHHHTT------CEEECCCCCTTCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcC--C-CCCEEEECCCCCcHHHHHHHHHHHhC------CeeEEEEeeCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 55566666653 2 23455899999999999998875221 1222 45677777654455666655554 7899
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCCC
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNMD 227 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~~ 227 (331)
+..++++|-.-.+....+.|-.-+..|.
T Consensus 1668 ~~vFL~tD~qi~~e~FLE~IN~lL~sGE 1695 (2695)
T 4akg_A 1668 RTCLIIDESNILETAFLERMNTLLANAD 1695 (2695)
T ss_dssp CEEEEEETTTCCSHHHHHHHHHHHHSSS
T ss_pred ceEEEEeccccccHHHHHHHHHHHccCC
Confidence 9999999987666666677666665443
No 433
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.67 E-value=0.17 Score=42.05 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999887653
No 434
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.61 E-value=0.17 Score=42.12 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|.+|+|||||...+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4567899999999999998887643
No 435
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.60 E-value=0.12 Score=44.75 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-.++|.|++|+||||+|+.+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998764
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.60 E-value=0.13 Score=42.69 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=20.7
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...-|.|+|..|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988764
No 437
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.58 E-value=0.13 Score=42.72 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=19.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..-|.|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999988764
No 438
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.56 E-value=0.14 Score=47.34 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 126 VKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+++-++. =..-.+++|+|..|+|||||.+.+.+.
T Consensus 61 ald~ll~-i~~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 61 AIDGLLT-CGIGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp HHHHHSC-EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEeeee-ecCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4444432 223358999999999999999999874
No 439
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.52 E-value=0.14 Score=42.80 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3467899999999999998887643
No 440
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.51 E-value=0.16 Score=43.14 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
+.|.|.|..|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5688999999999999988865
No 441
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.51 E-value=0.12 Score=42.72 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=19.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999987643
No 442
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.50 E-value=0.12 Score=42.45 Aligned_cols=25 Identities=12% Similarity=0.192 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4467899999999999999887654
No 443
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=90.47 E-value=0.19 Score=42.59 Aligned_cols=25 Identities=4% Similarity=0.026 Sum_probs=21.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
....+|+|+|+.|+||+|.|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3457999999999999999988755
No 444
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.47 E-value=0.13 Score=43.28 Aligned_cols=24 Identities=17% Similarity=0.061 Sum_probs=19.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.--|.|+|.+|+|||||...+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999888764
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.45 E-value=0.18 Score=41.48 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|..|+|||||...+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999888765
No 446
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=90.41 E-value=0.15 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999888764
No 447
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.40 E-value=0.27 Score=43.61 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 126 VKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+..||....+...-|.++|.+|+|||.||..+.+.
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 55555532233456889999999999999999873
No 448
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.38 E-value=0.14 Score=49.06 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=26.6
Q ss_pred EEEEEecCCchhHHHHHHHhhccccCCCc--CceEEEEeCCC
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDIVSRF--PRHIWFSVGKI 178 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~ 178 (331)
.++|.|-.|+|||+|+..+.++....+.= +..+++.+.+.
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER 195 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT 195 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC
Confidence 46788999999999999998765432211 23455555544
No 449
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.31 E-value=0.18 Score=42.11 Aligned_cols=25 Identities=12% Similarity=-0.100 Sum_probs=20.5
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|.+|+|||||...+.+..
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999998887643
No 450
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.28 E-value=0.22 Score=45.06 Aligned_cols=38 Identities=13% Similarity=-0.027 Sum_probs=26.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVG 176 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 176 (331)
-.++.|.|.+|+||||||..+..+.-... ..++|++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 35777889999999999988765432222 467777654
No 451
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.25 E-value=0.15 Score=48.86 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.3
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|.++|+.|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999998764
No 452
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.25 E-value=0.15 Score=42.44 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
...-|.|+|..|+|||||...+.+..
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 34568899999999999998887643
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.23 E-value=0.19 Score=41.78 Aligned_cols=25 Identities=20% Similarity=0.100 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..-|.|+|..|+|||||...+....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3467899999999999998887643
No 454
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.23 E-value=0.2 Score=41.45 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=21.2
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....-|.|+|.+|+|||||...+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 34456889999999999999988653
No 455
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.20 E-value=0.18 Score=44.38 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=20.7
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|+++|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999988754
No 456
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.17 E-value=0.16 Score=48.18 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...++.++|.+|+||||++..+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988765
No 457
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.16 E-value=0.2 Score=47.80 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEEecCCchhHHHHHHHhhcccc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMDDDI 163 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~~~~ 163 (331)
.++|.|..|+|||+|+..+.+....
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a 173 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATV 173 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBC
T ss_pred EEEEecCCCCCchHHHHHHHHHHHh
Confidence 4678899999999999988876443
No 458
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.13 E-value=0.12 Score=49.51 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhh
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
-.+++|+|..|+|||||++.+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35789999999999999998865
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.12 E-value=0.19 Score=42.36 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
--|.|+|.+|+|||||...+.+..
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 457799999999999998887653
No 460
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.02 E-value=0.18 Score=43.12 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.6
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|.|.|..|+||||+++.+.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999999764
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.98 E-value=0.2 Score=43.23 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.4
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.....|.|.|..|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 462
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.93 E-value=0.18 Score=42.60 Aligned_cols=23 Identities=17% Similarity=0.079 Sum_probs=21.0
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+|.|.|+.|+||||+++.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999774
No 463
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.92 E-value=0.19 Score=45.37 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=23.1
Q ss_pred CCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 134 GSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 134 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345678999999999999999888764
No 464
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.86 E-value=0.098 Score=42.53 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=10.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..-|.|+|..|+|||||...+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999887654
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.86 E-value=0.14 Score=41.95 Aligned_cols=26 Identities=15% Similarity=0.234 Sum_probs=21.3
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
....-|.|+|..|+|||||...+...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcC
Confidence 34456889999999999999988653
No 466
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=89.84 E-value=0.21 Score=43.51 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhcc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
....|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999998887543
No 467
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.79 E-value=0.36 Score=40.57 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|+|-|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3778899999999999998874
No 468
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=89.78 E-value=0.19 Score=42.63 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
..|+|-|.-|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999998874
No 469
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.74 E-value=0.15 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.1
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.-++|+|..|+|||||.+.++.-
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCc
Confidence 34999999999999999999763
No 470
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.69 E-value=0.39 Score=56.07 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=75.7
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEE-EEeCCCCCccccHHHHHHHHHhc-cCCc
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIW-FSVGKILDLSTVMNVITIRCKEI-PSSE 199 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~~~~l~~~l~~~-l~~k 199 (331)
.+-+|.+.|..+. .=.-+||.||+||++|++.+..-.. ..++ +.+++.++..+-.+.+...++.. .+++
T Consensus 1634 Hv~RI~RIL~qp~---GhaLLVGvgGSGkqSLtrLAa~i~~------~~vfqi~i~k~Y~~~~f~eDLk~l~~~aG~~~~ 1704 (3245)
T 3vkg_A 1634 HILRIDRVFRQPQ---GHALLIGVSGGGKSVLSRFVAWMNG------LSIYTIKVNNNYKSSDFDDDLRMLLKRAGCKEE 1704 (3245)
T ss_dssp HHHHHHHHHTSTT---CCEEEEESTTSSHHHHHHHHHHHTT------CEEECCC----CCHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHccCC---CCeEEecCCCCcHHHHHHHHHHHhC------CeeEEEeeeCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 5556666665322 2244789999999999998875221 1222 56677777665556666665554 7899
Q ss_pred eeEEEEeCCCCCCHHhHHHHHHhhcCCCCCCcEEEEecCCc-hHHhhccCC-ccccccccCCChHHHHHHHhhhC
Q 020066 200 MLLIALDGLCDLNDDNLANLRLLVTNMDLVGFYVLVTTQSR-SVATMMKQT-VPEAEHLIYFSESNSWSNLNCEL 272 (331)
Q Consensus 200 r~LlVLDdvw~~~~~~~~~l~~~l~~~~~~gs~IIvTTR~~-~va~~~~~~-~~~~~~l~~L~~~~s~~Lf~~~a 272 (331)
+..++++|-.-.+....+.|-.-+..|.-+| +.+.-.. .+...+... ..- .+..-+.++.|..|-.++
T Consensus 1705 ~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~---LF~~dE~~~i~~~~r~~a~~~--g~~~dt~~~l~~~Fi~rv 1774 (3245)
T 3vkg_A 1705 KICFIFDESNVLESSFLERMNTLLAGGEVPG---LFEGEEFTALMHACKETAQRN--GLILDSEEELYKYFTSQV 1774 (3245)
T ss_dssp CEEEEEEGGGCSSTHHHHHHHHHHHHSCCTT---SSCTTTHHHHHHHHHHHHHHT--TCCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeccccccHHHHHHHHHHhccCCccc---cCCHHHHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHH
Confidence 9999999865544556666666555443133 2222111 111111100 000 111227788999998765
No 471
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.67 E-value=0.15 Score=44.02 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=18.1
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..|.|.|..|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999874
No 472
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=89.58 E-value=0.16 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.2
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||++.++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999986
No 473
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.56 E-value=0.16 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 474
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.55 E-value=0.35 Score=47.43 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 125 SVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 125 ~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
++++.|..- ..=..++|.|..|+|||+|+..+.+.
T Consensus 221 rvID~l~Pi-grGqr~~Ifgg~g~GKT~L~~~ia~~ 255 (600)
T 3vr4_A 221 RVIDTFFPV-TKGGAAAVPGPFGAGKTVVQHQIAKW 255 (600)
T ss_dssp HHHHHHSCC-BTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hhhhccCCc-cCCCEEeeecCCCccHHHHHHHHHhc
Confidence 455656532 22346889999999999999998774
No 475
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=89.54 E-value=0.17 Score=42.42 Aligned_cols=24 Identities=21% Similarity=0.119 Sum_probs=20.4
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.--|.|+|..|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 446789999999999999988764
No 476
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.49 E-value=0.17 Score=42.05 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=18.0
Q ss_pred EEEEEE-ecCCchhHHHHHHHhh
Q 020066 138 RFIHIV-GVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~-G~gGiGKTtLa~~v~~ 159 (331)
++|+|+ +-||+||||+|..+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~ 24 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT 24 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH
Confidence 578888 6699999999977754
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.33 E-value=0.2 Score=43.50 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.3
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-..|.|.|..|+||||+++.+.+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999874
No 478
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.33 E-value=0.18 Score=42.85 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=20.0
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
...-|.|+|.+|+|||||...+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 345688999999999999988764
No 479
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.23 E-value=0.19 Score=47.82 Aligned_cols=34 Identities=18% Similarity=0.044 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 126 VKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 126 l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
+++-++. =..-.+++|+|..|+|||||.+.+.+-
T Consensus 147 vld~vl~-i~~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 147 AINALLT-VGRGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp HHHHHSC-CBTTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEeeeEE-ecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4444442 233458999999999999999999764
No 480
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=89.20 E-value=0.29 Score=43.40 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=20.8
Q ss_pred cEEEEEEecCCchhHHHHHHHhhc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...|+++|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356889999999999999998764
No 481
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.18 E-value=0.21 Score=42.64 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=18.4
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
-|.|+|-+|+|||+|...+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3668999999999999877654
No 482
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=89.14 E-value=0.22 Score=49.08 Aligned_cols=25 Identities=16% Similarity=0.108 Sum_probs=21.6
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|.|.|+.|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998764
No 483
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.05 E-value=0.19 Score=43.41 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=17.7
Q ss_pred EEEEEecCCchhHHHHHHHhhc
Q 020066 139 FIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 139 vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.|.+.|.||+||||+|..+...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3667899999999998776653
No 484
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.03 E-value=0.19 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 485
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.99 E-value=0.34 Score=53.52 Aligned_cols=73 Identities=16% Similarity=0.217 Sum_probs=45.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-CC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-SS 198 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~~ 198 (331)
-+++-|.|.+|+||||||.++........ ..++|++...+++.. .+.+++...+.... ..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G--~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~ 460 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 460 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhc
Confidence 45788999999999999987765432211 246676665554422 33445544444332 34
Q ss_pred ceeEEEEeCCCCC
Q 020066 199 EMLLIALDGLCDL 211 (331)
Q Consensus 199 kr~LlVLDdvw~~ 211 (331)
+.-+||+|.+...
T Consensus 461 ~~~lVVIDSL~al 473 (1706)
T 3cmw_A 461 AVDVIVVDSVAAL 473 (1706)
T ss_dssp CCSEEEESCSTTC
T ss_pred CCCEEEECCHHHh
Confidence 5679999998654
No 486
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=88.95 E-value=0.21 Score=45.04 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=27.6
Q ss_pred C-cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHh
Q 020066 121 G-SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVF 158 (331)
Q Consensus 121 G-~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 158 (331)
| ..+++.+.+.. .+++++|..|+|||||.+.+.
T Consensus 153 g~gi~~L~~~l~G-----~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 153 GEGIDELVDYLEG-----FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CTTHHHHHHHTTT-----CEEEEECSTTSSHHHHHHHHH
T ss_pred CCCHHHHHhhccC-----cEEEEECCCCCCHHHHHHHHH
Confidence 5 67888877652 478999999999999999987
No 487
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.93 E-value=0.2 Score=42.86 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.0
Q ss_pred EEEEecCCchhHHHHHHHhh
Q 020066 140 IHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~ 159 (331)
|+|.|-||+||||+|..+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~ 22 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK 22 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHH
Confidence 56689999999999987754
No 488
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.92 E-value=0.21 Score=46.32 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=25.9
Q ss_pred cHHHHHHHHhcCCCCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 122 SVDSVKNALLRDGSTVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 122 ~~~~l~~~L~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.++.|...+. -.+++|+|..|+|||||...+...
T Consensus 205 gl~~L~~~~~-----G~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 205 GLKPLEEALT-----GRISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp THHHHHHHHT-----TSEEEEECCTTSSHHHHHHHHHCC
T ss_pred CHHHHHHhcC-----CCEEEEECCCCccHHHHHHHHhcc
Confidence 5566655442 147899999999999999999863
No 489
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.79 E-value=0.4 Score=42.88 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=22.5
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhhc
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+.|+|+|..|+|||||...+...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 35678999999999999999988764
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.78 E-value=0.36 Score=54.07 Aligned_cols=72 Identities=15% Similarity=0.194 Sum_probs=43.5
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-C
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-S 197 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~ 197 (331)
.-+.+-|+|.+|+|||+||.++....... . ...+|++....++.. ...+.....+.... .
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~-G-~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-G-KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-T-CCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc-C-CcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 34678899999999999998886643221 1 134455554443221 12234444444332 3
Q ss_pred CceeEEEEeCCC
Q 020066 198 SEMLLIALDGLC 209 (331)
Q Consensus 198 ~kr~LlVLDdvw 209 (331)
.+..+||+|.+.
T Consensus 1504 ~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1504 GAVDVIVVDSVA 1515 (2050)
T ss_dssp TCCSEEEESCGG
T ss_pred CCCCEEEEcChh
Confidence 567899999984
No 491
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.71 E-value=0.37 Score=45.54 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=21.7
Q ss_pred CCcEEEEEEecCCchhHHHHHHHhh
Q 020066 135 STVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 135 ~~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
..-.++.|+|..|+|||||.+.+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHh
Confidence 3456899999999999999998876
No 492
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.71 E-value=0.2 Score=47.49 Aligned_cols=21 Identities=24% Similarity=0.532 Sum_probs=19.0
Q ss_pred EEEEecCCchhHHHHHHHhhc
Q 020066 140 IHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 140 i~I~G~gGiGKTtLa~~v~~~ 160 (331)
|+|+|..|+|||||...++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999998864
No 493
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.69 E-value=0.24 Score=42.25 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEEecCCchhHHHHHHHhhcc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
..|.+.|..|+||||+++.+.+.-
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999998743
No 494
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.69 E-value=0.22 Score=48.78 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.4
Q ss_pred CcEEEEEEecCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.-.+++|+|..|+|||||.+.+..
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999875
No 495
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.67 E-value=0.22 Score=49.55 Aligned_cols=25 Identities=16% Similarity=0.137 Sum_probs=21.9
Q ss_pred CcEEEEEEecCCchhHHHHHHHhhc
Q 020066 136 TVRFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 136 ~~~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
...+|.+.|+.|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 496
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.67 E-value=0.21 Score=48.12 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=20.3
Q ss_pred EEEEEEecCCchhHHHHHHHhh
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFM 159 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~ 159 (331)
.+++|+|..|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7899999999999999998864
No 497
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=88.65 E-value=0.27 Score=42.08 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=19.0
Q ss_pred CcEEEEEEe-cCCchhHHHHHHHhh
Q 020066 136 TVRFIHIVG-VSGTEVTHIAHRVFM 159 (331)
Q Consensus 136 ~~~vi~I~G-~gGiGKTtLa~~v~~ 159 (331)
..++|+|++ -||+||||+|..+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~ 27 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAF 27 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHH
Confidence 457888885 589999999977754
No 498
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=88.59 E-value=0.38 Score=53.92 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=46.2
Q ss_pred cEEEEEEecCCchhHHHHHHHhhccccCCCcCceEEEEeCCCCCcc-----------------ccHHHHHHHHHhcc-CC
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDDDIVSRFPRHIWFSVGKILDLS-----------------TVMNVITIRCKEIP-SS 198 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-----------------~~~~~l~~~l~~~l-~~ 198 (331)
-.++-|.|.+|+||||||..+........ ..++|++....++.. .+.+++...+.... ..
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~ 460 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 460 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhc
Confidence 45888999999999999988876432221 246677665554421 34455555544332 34
Q ss_pred ceeEEEEeCCCC
Q 020066 199 EMLLIALDGLCD 210 (331)
Q Consensus 199 kr~LlVLDdvw~ 210 (331)
+.-+||+|.+..
T Consensus 461 ~~~lIVIDSL~a 472 (2050)
T 3cmu_A 461 AVDVIVVDSVAA 472 (2050)
T ss_dssp CCSEEEESCGGG
T ss_pred CCcEEEECCHHH
Confidence 567999998754
No 499
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.52 E-value=0.21 Score=49.58 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred EEEEEEecCCchhHHHHHHHhhc
Q 020066 138 RFIHIVGVSGTEVTHIAHRVFMD 160 (331)
Q Consensus 138 ~vi~I~G~gGiGKTtLa~~v~~~ 160 (331)
.+++|+|..|+|||||.+.+..-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999863
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.52 E-value=0.23 Score=42.06 Aligned_cols=25 Identities=20% Similarity=0.313 Sum_probs=20.9
Q ss_pred cEEEEEEecCCchhHHHHHHHhhcc
Q 020066 137 VRFIHIVGVSGTEVTHIAHRVFMDD 161 (331)
Q Consensus 137 ~~vi~I~G~gGiGKTtLa~~v~~~~ 161 (331)
.--|.|+|..|+|||||...+.+..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999998887643
Done!