BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020067
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
Citri
Length = 313
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 176/308 (57%), Positives = 218/308 (70%)
Query: 14 NLYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYR 73
LYP + PY G LKV D HT+Y+EQ GNP G PVV LHGGPGGG RRF DP YR
Sbjct: 3 TLYPEITPYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMRRFHDPAKYR 62
Query: 74 IILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLA 133
I+LFDQRG+G+STPHA L NTTWDL+ DIE+LR HL + WQVFGGSWGSTLALAY+
Sbjct: 63 IVLFDQRGSGRSTPHADLVDNTTWDLVADIERLRTHLGVDRWQVFGGSWGSTLALAYAQT 122
Query: 134 HPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRL 193
HP +VT LVLRGIFLLR+ E++WFY+ GA+ ++PDAWE + + IP ER+ + A+ +RL
Sbjct: 123 HPQQVTELVLRGIFLLRRFELEWFYQEGASRLFPDAWEHYLNAIPPVERADLMSAFHRRL 182
Query: 194 NSDDKETQYAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPS 253
SDD+ T+ AAA+AW+ WE T+ L +E+ + ED F+LAFARIENHYF+N GFF
Sbjct: 183 TSDDEATRLAAAKAWSVWEGATSFLHVDEDFVTGHEDAHFALAFARIENHYFVNGGFFEV 242
Query: 254 DSFLLDNIDNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGHSANEPGIA 313
+ LL + I I IV GRYDV CP+ SAWDLHKAWP+A ++ +GHSA EP
Sbjct: 243 EDQLLRDAHRIADIPGVIVHGRYDVVCPLQSAWDLHKAWPKAQLQISPASGHSAFEPENV 302
Query: 314 AELVATNE 321
LV +
Sbjct: 303 DALVRATD 310
>pdb|1QTR|A Chain A, Crystal Structure Analysis Of The Prolyl Aminopeptidase
From Serratia Marcescens
pdb|1WM1|A Chain A, Crystal Structure Of Prolyl Aminopeptidase, Complex With
Pro-tboda
pdb|1X2B|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Sar-Tboda
pdb|1X2E|A Chain A, The Crystal Structure Of Prolyl Aminopeptidase Complexed
With Ala-Tboda
Length = 317
Score = 355 bits (910), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 164/310 (52%), Positives = 216/310 (69%), Gaps = 1/310 (0%)
Query: 14 NLYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYR 73
LYP + Y +G L D H IYWE SGNP G P VF+HGGPGGG +P +R+ FDP+ Y+
Sbjct: 6 GLYPPLAAYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHRQLFDPERYK 65
Query: 74 IILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLA 133
++LFDQRG G+S PHA LD NTTW L+ DIE+LR+ + +W VFGGSWGSTLALAY+
Sbjct: 66 VLLFDQRGCGRSRPHASLDNNTTWHLVADIERLREMAGVEQWLVFGGSWGSTLALAYAQT 125
Query: 134 HPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRL 193
HP++V+ +VLRGIF LRK+ + W+Y+ GA+ +P+ WE ++ ++ER + AY +RL
Sbjct: 126 HPERVSEMVLRGIFTLRKQRLHWYYQDGASRFFPEKWERVLSILSDDERKDVIAAYRQRL 185
Query: 194 NSDDKETQYAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPS 253
S D + Q AA+ W+ WE T LLP+ E+ GEDD F+LAFARIENHYF + GF S
Sbjct: 186 TSADPQVQLEAAKLWSVWEGETVTLLPSRESASFGEDD-FALAFARIENHYFTHLGFLES 244
Query: 254 DSFLLDNIDNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGHSANEPGIA 313
D LL N+ IRHI A IV GRYD+ C + +AWDL KAWPEA+ +V AGHS +EPGI
Sbjct: 245 DDQLLRNVPLIRHIPAVIVHGRYDMACQVQNAWDLAKAWPEAELHIVEGAGHSYDEPGIL 304
Query: 314 AELVATNEKL 323
+L+ ++
Sbjct: 305 HQLMIATDRF 314
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 103/267 (38%), Gaps = 45/267 (16%)
Query: 45 GHPVVFLHGGPGGGTTPSNRRFFDP---DFYRIILFDQRGAG-KSTPHACLDQNTTWDLI 100
G PV+ +HG G + +N R P FYR+I D G G P +W +
Sbjct: 25 GQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSW--V 82
Query: 101 DDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEG 160
D I + LEI + + G S+G LA+A +L + ++V +VL G R +
Sbjct: 83 DHIIGIMDALEIEKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTRFDVTE----- 137
Query: 161 GAAAI--YPDAWESFRDLIPENERSCFVDAYSKRLNSDDKETQYAAARAWTKWEMMTAHL 218
G A+ Y + E+ R+L+ + AY + L +D+ AR
Sbjct: 138 GLNAVWGYTPSIENMRNLLD-------IFAYDRSLVTDE------LAR------------ 172
Query: 219 LPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLLDNIDNIRHINATIVQGRYDV 278
L E +I+ G + FS F + D L N I+ GR D
Sbjct: 173 LRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPN-------ETLIIHGREDQ 225
Query: 279 CCPMMSAWDLHKAWPEADFKVVADAGH 305
P+ S+ L + A V GH
Sbjct: 226 VVPLSSSLRLGELIDRAQLHVFGRCGH 252
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 76/162 (46%), Gaps = 17/162 (10%)
Query: 42 NPTGHPVVFLHGGPGGGTT--PSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDL 99
N TG PVVF+ G G G T P F YR I FD RG G +T +A + TT +
Sbjct: 40 NGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIG-ATENA--EGFTTQTM 96
Query: 100 IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVL---RGIFLLRKKEIDW 156
+ D L + L+I +V G S G+ +A + P+ V+ VL RG R
Sbjct: 97 VADTAALIETLDIAPARVVGVSMGAFIAQELMVVAPELVSSAVLMATRG----RLDRARQ 152
Query: 157 FYEGGAAAIYPDAWESFRDLIPE-NERSCFVDAYSKRLNSDD 197
F+ A +Y +S L P + R+ ++ +S++ +DD
Sbjct: 153 FFNKAEAELY----DSGVQLPPTYDARARLLENFSRKTLNDD 190
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 103/267 (38%), Gaps = 45/267 (16%)
Query: 45 GHPVVFLHGGPGGGTTPSNRRFFDP---DFYRIILFDQRGAG-KSTPHACLDQNTTWDLI 100
G PV+ +HG G + +N R P FYR+I D G G P +W +
Sbjct: 25 GQPVILIHGSGPGVSAYANWRLTIPALSKFYRVIAPDMVGFGFTDRPENYNYSKDSW--V 82
Query: 101 DDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEG 160
D I + LEI + + G ++G LA+A +L + ++V +VL G R +
Sbjct: 83 DHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTE----- 137
Query: 161 GAAAI--YPDAWESFRDLIPENERSCFVDAYSKRLNSDDKETQYAAARAWTKWEMMTAHL 218
G A+ Y + E+ R+L+ + AY + L +D+ AR
Sbjct: 138 GLNAVWGYTPSIENMRNLLD-------IFAYDRSLVTDE------LAR------------ 172
Query: 219 LPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLLDNIDNIRHINATIVQGRYDV 278
L E +I+ G + FS F + D L N I+ GR D
Sbjct: 173 LRYEASIQPGFQESFSSMFPEPRQRWIDALASSDEDIKTLPN-------ETLIIHGREDQ 225
Query: 279 CCPMMSAWDLHKAWPEADFKVVADAGH 305
P+ S+ L + A V GH
Sbjct: 226 VVPLSSSLRLGELIDRAQLHVFGRCGH 252
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKS-TPHACLD 92
IY++ G +G PV+F HG P + YR I FD+RG G+S P D
Sbjct: 11 IYFKDWG--SGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGND 68
Query: 93 QNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD-KVTGLVLRG 145
+T DDI +L +HL++ E + G S G Y H +V GLVL G
Sbjct: 69 YDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKS-TPHACLD 92
IY++ G +G PV+F HG P + YR I FD+RG G+S P D
Sbjct: 11 IYFKDWG--SGKPVLFSHGWPLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGND 68
Query: 93 QNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD-KVTGLVLRG 145
+T DDI +L +HL++ E + G S G Y H +V GLVL G
Sbjct: 69 YDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 48 VVFLHG-GPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHACLDQNTTWDLIDDI 103
VV LHG GPG + R DP YR+IL D G GKS + ++ + DL I
Sbjct: 39 VVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKS--DSVVNSGSRSDLNARI 96
Query: 104 EK-LRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
K + L+I + + G S G ++A++L P++V LVL G
Sbjct: 97 LKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMG 139
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 4/109 (3%)
Query: 39 QSGNPTGHPVVFLHGGPGGGT--TPSNRRFFDPDFYRIILFDQRGAGKST--PHACLDQN 94
++ P P++ LHGGPG + D +I +DQ G G ST P A D
Sbjct: 48 ENAQPHALPLIVLHGGPGMAHNYVANIAALADETGRTVIHYDQVGCGNSTHLPDAPADFW 107
Query: 95 TTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVL 143
T +D+ + L I + V G SWG L ++ P + L +
Sbjct: 108 TPQLFVDEFHAVCTALGIERYHVLGQSWGGMLGAEIAVRQPSGLVSLAI 156
>pdb|3OOS|A Chain A, The Structure Of An AlphaBETA FOLD FAMILY HYDROLASE FROM
BACILLUS Anthracis Str. Sterne
Length = 278
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 31/241 (12%)
Query: 70 DFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALA 129
D Y + L + +G G S + + + I D+E +R+ L I +W G S G LAL
Sbjct: 48 DHYSVYLVNLKGCGNSDSAKNDSEYSXTETIKDLEAIREALYINKWGFAGHSAGGXLALV 107
Query: 130 YSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLI--PENERSCFVD 187
Y+ + +T +++ GGAAA + S +D I +N + +
Sbjct: 108 YATEAQESLTKIIV----------------GGAAA--SKEYASHKDSIYCSKNVKFNRIV 149
Query: 188 AYSKRLNSDD--KETQYAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYF 245
+ LN D +E + A +R W + L EE +K R+ +YF
Sbjct: 150 SIXNALNDDSTVQEERKALSREWALXSFYSEEKL--EEALKLPNSG--KTVGNRL--NYF 203
Query: 246 LNKGFFPSDSFLLDNIDNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGH 305
+ D + + ++ I + I G++DV CP + + ++ P A ++ H
Sbjct: 204 RQVEY--KDYDVRQKLKFVK-IPSFIYCGKHDVQCPYIFSCEIANLIPNATLTKFEESNH 260
Query: 306 S 306
+
Sbjct: 261 N 261
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 31 DIHTIYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKST-PH 88
D IY++ G +G P+VF HG P + S F YR+I D+RG G+S+ P
Sbjct: 7 DGTQIYYKDWG--SGQPIVFSHGWPLNADSWESQMIFLAAQGYRVIAHDRRGHGRSSQPW 64
Query: 89 ACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWG 123
+ D +T DD+ +L +HL++ + +FG S G
Sbjct: 65 SGNDMDT---YADDLAQLIEHLDLRDAVLFGFSTG 96
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR++ DQRG G+S+ + +L+ D+ + + V G WG+ +A ++
Sbjct: 61 YRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFA 120
Query: 132 LAHPDKVTGLV 142
HPD+ G+V
Sbjct: 121 WLHPDRCAGVV 131
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR++ DQRG G+S+ + +L+ D+ + + V G WG+ +A ++
Sbjct: 55 YRVVAIDQRGYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWGAPVAWTFA 114
Query: 132 LAHPDKVTGLV 142
HPD+ G+V
Sbjct: 115 WLHPDRCAGVV 125
>pdb|2YYS|A Chain A, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
pdb|2YYS|B Chain B, Crystal Structure Of The Proline Iminopeptidase-Related
Protein Ttha1809 From Thermus Thermophilus Hb8
Length = 286
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 3/155 (1%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFD-PDFYRIILFDQRGAGKSTPHACLDQ 93
+Y E G G + LHGGPGG D + +R++ FDQRG+G+S +
Sbjct: 15 LYVEDVGPVEGPALFVLHGGPGGNAYVLREGLQDYLEGFRVVYFDQRGSGRSLELPQDPR 74
Query: 94 NTTWD-LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKK 152
T D L++D L + L + + + +G+ +AL P + G +L ++
Sbjct: 75 LFTVDALVEDTLLLAEALGVERFGLLAHGFGAVVALEVLRRFP-QAEGAILLAPWVNFPW 133
Query: 153 EIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVD 187
E A PD E+ ++ + E D
Sbjct: 134 LAARLAEAAGLAPLPDPEENLKEALKREEPKALFD 168
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPG-GGTTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y ++ +HGGPG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G S+G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPG-GGTTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y ++ +HGGPG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G S+G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPG-GGTTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y ++ +HGGPG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G S+G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPG-GGTTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y ++ +HGGPG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G S+G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT--PSNRRFFDPDFYRIILFDQRGAGKST-PHACL 91
+Y+E G TG PVV +HG P G + + D YR+I +D+RG G+S+ P
Sbjct: 15 LYYEDHG--TGQPVVLIHGFPLSGHSWERQSAALLDAG-YRVITYDRRGFGQSSQPTTGY 71
Query: 92 DQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGS----TLALAYSLAHPDKVTGLVLRGIF 147
D +T D+ + + L++ + + G S G+ +Y A KV L F
Sbjct: 72 DYDT---FAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPF 128
Query: 148 LLRKKE------IDWFYEGGAAAIYPDAW 170
LL+ + F++G AA+ D +
Sbjct: 129 LLKTDDNPDGAAPQEFFDGIVAAVKADRY 157
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKS-TPHACLD 92
IY++ G +G PV+F HG + YR I FD+RG G+S P D
Sbjct: 11 IYFKDWG--SGKPVLFSHGWILDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGND 68
Query: 93 QNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD-KVTGLVLRG 145
+T DDI +L +HL++ E + G S G Y H +V GLVL G
Sbjct: 69 YDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKS-TPHACLD 92
IY++ G +G PV+F HG + YR I FD+RG G+S P D
Sbjct: 11 IYFKDWG--SGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGND 68
Query: 93 QNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD-KVTGLVLRG 145
+T DDI +L +HL++ E + G S G Y H +V GLVL G
Sbjct: 69 YDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKS-TPHACLD 92
IY++ G +G PV+F HG + YR I FD+RG G+S P D
Sbjct: 11 IYFKDWG--SGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGND 68
Query: 93 QNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPD-KVTGLVLRG 145
+T DDI +L +HL++ E + G S G Y H +V GLVL G
Sbjct: 69 YDT---FADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLG 119
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT--PSNRRFFDPDFYRIILFDQRGAGKST-PHACL 91
+Y+E G TG PVV +HG P G + + D YR+I +D+RG G+S+ P
Sbjct: 15 LYYEDHG--TGQPVVLIHGFPLSGHSWERQSAALLDAG-YRVITYDRRGFGQSSQPTTGY 71
Query: 92 DQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGS----TLALAYSLAHPDKVTGLVLRGIF 147
D +T D+ + + L++ + + G S G+ +Y A KV L F
Sbjct: 72 DYDT---FAADLNTVLETLDLQDAVLVGFSTGTGEVARYVSSYGTARIAKVAFLASLEPF 128
Query: 148 LLRKKE------IDWFYEGGAAAIYPDAW 170
LL+ + F++G AA+ D +
Sbjct: 129 LLKTDDNPDGAAPQEFFDGIVAAVKADRY 157
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPG-GGTTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y ++ +HGGPG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGGPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G ++G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLMGSAYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 25 GILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-FFDPDFYRIILFDQRGAG 83
G + SD I+++ G G PVVF HG P N+ FF YR+I D+RG G
Sbjct: 1 GTVTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDWDNQMLFFLSHGYRVIAHDRRGHG 60
Query: 84 KSTPHACLDQNTTWDLID----DIEKLRQHLEIPEWQVFGGSWGSTLALAY-SLAHPDKV 138
+S DQ +T +D D+ L + L++ G S G Y + A P +V
Sbjct: 61 RS------DQPSTGHDMDTYAADVAALTEALDLRGAVHIGHSTGGGEVARYVARAEPGRV 114
Query: 139 TGLVL 143
VL
Sbjct: 115 AKAVL 119
>pdb|3V1K|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1K|B Chain B, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400.
pdb|3V1N|A Chain A, Crystal Structure Of The H265q Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, After Exposure
To Its Substrate Hopda
Length = 286
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-----FFDPDFYRIILFDQRGAGKSTPHA 89
I++ ++GN G V+ LHGG G SN F D YR+IL D G KS
Sbjct: 25 IHYNEAGN--GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDA-V 80
Query: 90 CLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+D+ ++ L L+I + G S G AL ++L +PD++ L+L G
Sbjct: 81 VMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|2OG1|A Chain A, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2OG1|B Chain B, Crystal Structure Of Bphd, A C-C Hydrolase From
Burkholderia Xenovorans Lb400
pdb|2PU5|A Chain A, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
pdb|2PU5|B Chain B, Crystal Structure Of A C-C Bond Hydrolase, Bphd, From
Burkholderia Xenovorans Lb400
Length = 286
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-----FFDPDFYRIILFDQRGAGKSTPHA 89
I++ ++GN G V+ LHGG G SN F D YR+IL D G KS
Sbjct: 25 IHYNEAGN--GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDA-V 80
Query: 90 CLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+D+ ++ L L+I + G S G AL ++L +PD++ L+L G
Sbjct: 81 VMDEQRGLVNARAVKGLMDALDIDRAHLVGNSMGGATALNFALEYPDRIGKLILMG 136
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPG-GGTTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y ++ +HG PG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLMTMHGAPGMSHDYLLSLRDMTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G S+G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLMGSSYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT--PSNRRFFDPDFYRIILFDQRGAGKST-PHACL 91
+Y+E G G PVV +HG P G + + D YR+I +D+RG G+S+ P
Sbjct: 15 LYYEDHG--AGQPVVLIHGFPLSGHSWERQSAALLDAG-YRVITYDRRGFGQSSQPTTGY 71
Query: 92 DQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGS----TLALAYSLAHPDKVTGLVLRGIF 147
D +T D+ + + L++ + + G S G+ +Y A KV L F
Sbjct: 72 DYDT---FAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAKVAFLASLEPF 128
Query: 148 LLRKKE------IDWFYEGGAAAIYPDAW 170
LL+ + F++G AA+ D +
Sbjct: 129 LLKTDDNPDGAAPKEFFDGIVAAVKADRY 157
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT--PSNRRFFDPDFYRIILFDQRGAGKST-PHACL 91
+Y+E G TG PVV +HG P G + + D YR+I +D+RG G+S+ P
Sbjct: 16 LYYEDHG--TGVPVVLIHGFPLSGHSWERQSAALLDAG-YRVITYDRRGFGQSSQPTTGY 72
Query: 92 DQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGS----TLALAYSLAHPDKVTGLVLRGIF 147
D +T D+ + + L++ + + G S G+ +Y A V L F
Sbjct: 73 DYDT---FAADLNTVLETLDLQDAVLVGFSMGTGEVARYVSSYGTARIAAVAFLASLEPF 129
Query: 148 LLRKKE------IDWFYEGGAAAIYPDAW 170
LL+ + F++G AA+ D +
Sbjct: 130 LLKTDDNPDGAAPQEFFDGIVAAVKADRY 158
>pdb|2PU7|A Chain A, Crystal Structure Of S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd, From Burkholderia Xenovorans Lb400
pdb|2PUJ|A Chain A, Crystal Structure Of The S112aH265A DOUBLE MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400, In
Complex With Its Substrate Hopda
Length = 286
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-----FFDPDFYRIILFDQRGAGKSTPHA 89
I++ ++GN G V+ LHGG G SN F D YR+IL D G KS
Sbjct: 25 IHYNEAGN--GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDA-V 80
Query: 90 CLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+D+ ++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 81 VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|3V1L|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400
pdb|3V1M|A Chain A, Crystal Structure Of The S112aH265Q MUTANT OF A C-C
Hydrolase, Bphd From Burkholderia Xenovorans Lb400,
After Exposure To Its Substrate Hopda
Length = 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-----FFDPDFYRIILFDQRGAGKSTPHA 89
I++ ++GN G V+ LHGG G SN F D YR+IL D G KS
Sbjct: 25 IHYNEAGN--GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDA-V 80
Query: 90 CLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+D+ ++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 81 VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|2RHT|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3-Cl Hopda
pdb|2RHW|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
3,10-Di-Fluoro Hopda
pdb|2RI6|A Chain A, Crystal Structure Of S112a Mutant Of A C-C Hydrolase, Bphd
From Burkholderia Xenovorans Lb400
Length = 283
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-----FFDPDFYRIILFDQRGAGKSTPHA 89
I++ ++GN G V+ LHGG G SN F D YR+IL D G KS
Sbjct: 22 IHYNEAGN--GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDA-V 77
Query: 90 CLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+D+ ++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 78 VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 133
>pdb|2PUH|A Chain A, Crystal Structure Of The S112a Mutant Of A C-C Hydrolase,
Bphd From Burkholderia Xenovorans Lb400, In Complex With
Its Substrate Hopda
Length = 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRR-----FFDPDFYRIILFDQRGAGKSTPHA 89
I++ ++GN G V+ LHGG G SN F D YR+IL D G KS
Sbjct: 25 IHYNEAGN--GETVIMLHGGGPGAGGWSNYYRNVGPFVDAG-YRVILKDSPGFNKSDA-V 80
Query: 90 CLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+D+ ++ L L+I + G + G AL ++L +PD++ L+L G
Sbjct: 81 VMDEQRGLVNARAVKGLMDALDIDRAHLVGNAMGGATALNFALEYPDRIGKLILMG 136
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)
Query: 28 KVSDIHTIYWEQSGNPTGHPVVFLHGGPGGG-TTPSNRRFFDPDFYRIILFDQRGAGKST 86
KV+ I+ Y + HGGPG + R + ++ +DQ G G+S
Sbjct: 11 KVNGIYIYYKLCKAPEEKAKLXTXHGGPGXSHDYLLSLRDXTKEGITVLFYDQFGCGRSE 70
Query: 87 PHACLDQNT-TWDL-IDDIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
DQ+ T D +++ E LR L E +VF G S+G LALAY++ + D + GL+
Sbjct: 71 EP---DQSKFTIDYGVEEAEALRSKLFGNE-KVFLXGSSYGGALALAYAVKYQDHLKGLI 126
Query: 143 LRG 145
+ G
Sbjct: 127 VSG 129
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 40 SGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKST-PHACLDQNT 95
+G+P VV LHG G SN R PD + ++ D G G+S P
Sbjct: 24 AGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDLIGFGQSEYPETYPGHIM 83
Query: 96 TWD--LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+W ++ I L H I + + G S G + L + P++ + L G
Sbjct: 84 SWVGMRVEQILGLMNHFGIEKSHIVGNSMGGAVTLQLVVEAPERFDKVALMG 135
>pdb|3V48|A Chain A, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
pdb|3V48|B Chain B, Crystal Structure Of The Putative AlphaBETA HYDROLASE RUTD
FROM E.Coli
Length = 268
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 85/287 (29%)
Query: 47 PVVFLHGGPGGGTTPSNRRFFDPDF------YRIILFDQRGAGKSTPHACLDQNTTWDLI 100
PVV L G GG + ++ P Y+++ +DQRG G + P + +
Sbjct: 16 PVVVLISGLGGSGS-----YWLPQLAVLEQEYQVVCYDQRGTGNN-PDTLAEDYSIAQXA 69
Query: 101 DDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLV-----------LRGIFLL 149
++ + I + V G + G+ + +L +P VT L+ R F +
Sbjct: 70 AELHQALVAAGIEHYAVVGHALGALVGXQLALDYPASVTVLISVNGWLRINAHTRRCFQV 129
Query: 150 RKKEIDWFYEGGAAA--------IYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKETQ 201
R++ Y GGA A +YP W + R + RL ++D
Sbjct: 130 RER---LLYSGGAQAWVEAQPLFLYPADWXAAR---------------APRLEAEDA--- 168
Query: 202 YAAARAWTKWEMMTAHLLPNEENIKRGEDDIFSLAFARIENHYFLNKGFFPSDSFLLDNI 261
+ AH ++R + +L A +H
Sbjct: 169 -----------LALAHFQGKNNLLRR----LNALKRADFSHH-----------------A 196
Query: 262 DNIRHINATIVQGRYDVCCPMMSAWDLHKAWPEADFKVVADAGHSAN 308
D IR I+ D+ P + +LH A P++ V GH+ N
Sbjct: 197 DRIR-CPVQIICASDDLLVPTACSSELHAALPDSQKXVXPYGGHACN 242
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR+I DQ G KS+ A Q + L + L + L + V G S G LA Y+
Sbjct: 74 YRVIAVDQVGFCKSSKPAHY-QYSFQQLAANTHALLERLGVARASVIGHSXGGXLATRYA 132
Query: 132 LAHPDKVTGLVL 143
L +P +V LVL
Sbjct: 133 LLYPRQVERLVL 144
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQ 93
+Y+E G +G PVV +HG P G + R YR+I +D+RG G S+
Sbjct: 15 LYYEDQG--SGQPVVLIHGYPLDGHSWERQTRELLAQGYRVITYDRRGFGGSS-----KV 67
Query: 94 NTTWD---LIDDIEKLRQHLEIPEWQVFGGSWGS 124
NT +D D+ + + L++ + + G S G+
Sbjct: 68 NTGYDYDTFAADLHTVLETLDLRDVVLVGFSMGT 101
>pdb|3FSG|A Chain A, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|B Chain B, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
pdb|3FSG|C Chain C, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 44 TGHPVVFLHGGPGGGTTPSNRRFFDP----DFYRIILFDQRGAGKSTPHA-CLDQNTTWD 98
+G P++FLHG S FF+P Y+ I D G G S P + N
Sbjct: 20 SGTPIIFLHG--LSLDKQSTXLFFEPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLET 77
Query: 99 LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVL 143
LI+ IE++ + + ++G S+G LA A + D+ G+ L
Sbjct: 78 LIEAIEEI---IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFL 119
>pdb|2PSF|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSF|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 310
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 48 VVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIE 104
V+FLHG T+ R P R I+ D G GKS N ++ L+D +
Sbjct: 46 VIFLHGN---ATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSG----NGSYRLLDHYK 98
Query: 105 KLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPDKVTGLV 142
L + L +P+ +F G WG+ LA Y+ H D++ +V
Sbjct: 99 YLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|3FSG|D Chain D, Crystal Structure Of AlphaBETA SUPERFAMILY HYDROLASE FROM
OENOCOCCUS Oeni Psu-1
Length = 272
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%)
Query: 44 TGHPVVFLHGGPGGGTTPSNRRFFDP----DFYRIILFDQRGAGKSTPHA-CLDQNTTWD 98
+G P++FLHG S FF+P Y+ I D G G S P + N
Sbjct: 20 SGTPIIFLHG--LSLDKQSTCLFFEPLSNVGQYQRIYLDLPGXGNSDPISPSTSDNVLET 77
Query: 99 LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVL 143
LI+ IE++ + + ++G S+G LA A + D+ G+ L
Sbjct: 78 LIEAIEEI---IGARRFILYGHSYGGYLAQAIAFHLKDQTLGVFL 119
>pdb|2PSH|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSH|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 48 VVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIE 104
V+FLHG T+ R P R I+ D G GKS N ++ L+D +
Sbjct: 47 VIFLHGN---ATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSG----NGSYRLLDHYK 99
Query: 105 KLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPDKVTGLV 142
L + L +P+ +F G WG+ LA Y+ H D++ +V
Sbjct: 100 YLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|2PSD|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSE|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 318
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 48 VVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIE 104
V+FLHG T+ R P R I+ D G GKS N ++ L+D +
Sbjct: 46 VIFLHGN---ATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSG----NGSYRLLDHYK 98
Query: 105 KLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPDKVTGLV 142
L + L +P+ +F G WG+ LA Y+ H D++ +V
Sbjct: 99 YLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 140
>pdb|2PSJ|A Chain A, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
pdb|2PSJ|B Chain B, Crystal Structures Of The Luciferase And Green Fluorescent
Protein From Renilla Reniformis
Length = 319
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 48 VVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIE 104
V+FLHG T+ R P R I+ D G GKS N ++ L+D +
Sbjct: 47 VIFLHGN---ATSSYLWRHVVPHIEPVARCIIPDLIGMGKSGKSG----NGSYRLLDHYK 99
Query: 105 KLR---QHLEIPEWQVF-GGSWGSTLALAYSLAHPDKVTGLV 142
L + L +P+ +F G WG+ LA Y+ H D++ +V
Sbjct: 100 YLTAWFELLNLPKKIIFVGHDWGAALAFHYAYEHQDRIKAIV 141
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 28/157 (17%)
Query: 45 GHPVVFLHGGPGGGTTPSNRRFFDPDF-------YRIILFDQRGAGKSTPHACLDQNTTW 97
G P++ +HG G F P +R+I D G GKST +D + ++
Sbjct: 24 GAPLLMIHGNSSSGA------IFAPQLEGEIGKKWRVIAPDLPGHGKSTD--AIDPDRSY 75
Query: 98 DL---IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEI 154
+ D + ++ Q L I + VFG S G + + +P+ + GL++ G + ++E+
Sbjct: 76 SMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEV 134
Query: 155 DWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSK 191
++ G PD + +++ E + V++Y++
Sbjct: 135 GQGFKSG-----PDMALAGQEIFSERD----VESYAR 162
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 72/157 (45%), Gaps = 28/157 (17%)
Query: 45 GHPVVFLHGGPGGGTTPSNRRFFDPDF-------YRIILFDQRGAGKSTPHACLDQNTTW 97
G P++ +HG G F P +R+I D G GKST +D + ++
Sbjct: 24 GAPLLMIHGNSSSGA------IFAPQLEGEIGKKWRVIAPDLPGHGKSTD--AIDPDRSY 75
Query: 98 DL---IDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEI 154
+ D + ++ Q L I + VFG S G + + +P+ + GL++ G + ++E+
Sbjct: 76 SMEGYADAMTEVMQQLGIADAVVFGWSLGGHIGIEMIARYPE-MRGLMITGTPPVAREEV 134
Query: 155 DWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSK 191
++ G PD + +++ E + V++Y++
Sbjct: 135 GQGFKSG-----PDMALAGQEIFSERD----VESYAR 162
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 54 GPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHAC-LDQNTTWD-LIDDIEKLRQ 108
PG G S P F +R+ILFD G+G S A L++ T D D+ + +
Sbjct: 26 APGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCE 85
Query: 109 HLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
L++ E G S G+ + + S+ P+ + LV+ G
Sbjct: 86 ALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVG 122
>pdb|3FOB|A Chain A, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|B Chain B, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
pdb|3FOB|C Chain C, Crystal Structure Of Bromoperoxidase From Bacillus
Anthracis
Length = 281
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTT-PSNRRFFDPDFYRIILFDQRGAGKST 86
IY+E G TG PVV +HG P G + YR+I +D+RG GKS+
Sbjct: 19 IYYEDHG--TGKPVVLIHGWPLSGRSWEYQVPALVEAGYRVITYDRRGFGKSS 69
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR++ D G G+S+ + ++ + I+++ Q L + G S G+ LA A +
Sbjct: 54 YRVVAPDLFGHGRSSHLEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMGAMLATAIA 113
Query: 132 LAHPDKVTGLVLRGIFLL---RKKE---------IDWFYEGGAAAIYPD---AWESFRDL 176
P K+ L+L + L KKE +D+ I+PD A R
Sbjct: 114 SVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLSSTPQHPIFPDVATAASRLRQA 173
Query: 177 IP 178
IP
Sbjct: 174 IP 175
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 66 FFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGST 125
FF YR++ D+RG G+S+ D + DD+ + HL I G S G
Sbjct: 44 FFLAHGYRVVAHDRRGHGRSS--QVWDGHDMDHYADDVAAVVAHLGIQGAVHVGHSTGGG 101
Query: 126 LALAYSLAHP-DKVTGLVL 143
+ Y HP DKV VL
Sbjct: 102 EVVRYMARHPEDKVAKAVL 120
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 54 GPGGGTTPSNRRFFDP---DFYRIILFDQRGAGKSTP-------HACLDQNTTWDLIDDI 103
G G GT S + P D YR++L+D GAG + P ++ L + ++DLI +
Sbjct: 23 GHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNL-EGYSFDLIAIL 81
Query: 104 EKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGG 161
E L+ I G S + + + SL PD + +V+ ++D Y+GG
Sbjct: 82 EDLK----IESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVD--YQGG 133
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 54 GPGGGTTPSNRRFFDP---DFYRIILFDQRGAGKSTP-------HACLDQNTTWDLIDDI 103
G G GT S + P D YR++L+D GAG + P ++ L + ++DLI +
Sbjct: 41 GHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNL-EGYSFDLIAIL 99
Query: 104 EKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGG 161
E L+ I G S + + + SL PD + +V+ ++D Y+GG
Sbjct: 100 EDLK----IESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVD--YQGG 151
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 54 GPGGGTTPSNRRFFDP---DFYRIILFDQRGAGKSTP-------HACLDQNTTWDLIDDI 103
G G GT S + P D YR++L+D GAG + P ++ L + ++DLI +
Sbjct: 25 GHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFDRYSNL-EGYSFDLIAIL 83
Query: 104 EKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDWFYEGG 161
E L+ I G S + + + SL PD + +V+ ++D Y+GG
Sbjct: 84 EDLK----IESCIFVGHSVSAMIGVLASLNRPDLFSKIVMISASPRYVNDVD--YQGG 135
>pdb|2CJP|A Chain A, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
pdb|2CJP|B Chain B, Structure Of Potato (Solanum Tuberosum) Epoxide Hydrolase
I (Steh1)
Length = 328
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 45 GHPVVFLHGGPGGGTTPSNRRFFDPDF-YRIILFDQRGAGKSTPHACLDQN--TTWDLID 101
G ++F+HG P + ++ + + YR + D RG G +T D + + L+
Sbjct: 31 GPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVG 90
Query: 102 DIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
D+ L + + E +VF WG+ +A L PDKV LV
Sbjct: 91 DVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALV 133
>pdb|3CXU|A Chain A, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
pdb|3CXU|B Chain B, Structure Of A Y149f Mutant Of Epoxide Hydrolase From
Solanum Tuberosum
Length = 328
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 45 GHPVVFLHGGPGGGTTPSNRRFFDPDF-YRIILFDQRGAGKSTPHACLDQN--TTWDLID 101
G ++F+HG P + ++ + + YR + D RG G +T D + + L+
Sbjct: 31 GPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVG 90
Query: 102 DIEKLRQHLEIPEWQVF--GGSWGSTLALAYSLAHPDKVTGLV 142
D+ L + + E +VF WG+ +A L PDKV LV
Sbjct: 91 DVVALLEAIAPNEEKVFVVAHDWGALIAWHLCLFRPDKVKALV 133
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 72 YRIILFDQRGAGKSTP-HACLDQNTTWD-LIDDIEKLRQHLEIPEWQVFGGSWGSTLALA 129
+R++L+D AG P H + D +DD+ + L IP G S + + +
Sbjct: 44 HRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGIL 103
Query: 130 YSLAHPDKVTGLVLRG 145
S+ PD LVL G
Sbjct: 104 ASIRRPDLFAKLVLIG 119
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 72 YRIILFDQRGAGKSTP-HACLDQNTTWD-LIDDIEKLRQHLEIPEWQVFGGSWGSTLALA 129
+R++L+D AG P H + D +DD+ + L IP G S + + +
Sbjct: 46 HRVVLYDLVCAGSVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSVSAMIGIL 105
Query: 130 YSLAHPDKVTGLVLRG 145
S+ PD LVL G
Sbjct: 106 ASIRRPDLFAKLVLIG 121
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 15/149 (10%)
Query: 1 MMESGKELPELNTNLYPYVEPYSTGILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTT 60
M+ +++ E + YVE + + + T Y E G PV+ +HGG G +
Sbjct: 1 MLNKAEQISEKSER--AYVERF----VNAGGVETRYLEAG---KGQPVILIHGGGAGAES 51
Query: 61 PSNRRFFDPDF---YRIILFDQRGAGKST-PHACLDQNTTWDLIDDIEKLRQHLEIPEWQ 116
N R P YR+I D G GK+ P Q+ + D K +
Sbjct: 52 EGNWRNVIPILARHYRVIAMDMLGFGKTAKPDIEYTQDRRIRHLHDFIKAMNF--DGKVS 109
Query: 117 VFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
+ G S G L S+ H + V LVL G
Sbjct: 110 IVGNSMGGATGLGVSVLHSELVNALVLMG 138
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 44 TGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQNTTWDLIDD- 102
T +VFLHG T N D Y +I D G G+ + +D+ +D I
Sbjct: 15 TNQVLVFLHGFLSDSRTYHNHIEKFTDNYHVITIDLPGHGED--QSSMDETWNFDYITTL 72
Query: 103 IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRG 145
++++ + +FG S G +AL Y++ ++ L+L
Sbjct: 73 LDRILDKYKDKSITLFGYSMGGRVALYYAINGHIPISNLILES 115
>pdb|2XMQ|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMQ|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 99 LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDW 156
L D I + Q+L G G+ + Y+L HPD V GLVL I K +DW
Sbjct: 87 LADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 144
>pdb|2XMR|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|B Chain B, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
pdb|2XMR|C Chain C, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 99 LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDW 156
L D I + Q+L G G+ + Y+L HPD V GLVL I K +DW
Sbjct: 87 LADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 144
>pdb|2XMS|A Chain A, Crystal Structure Of Human Ndrg2 Protein Provides Insight
Into Its Role As A Tumor Suppressor
Length = 281
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 99 LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDW 156
L D I + Q+L G G+ + Y+L HPD V GLVL I K +DW
Sbjct: 87 LADMIPCVLQYLNFSTIIGVGVGAGAYILARYALNHPDTVEGLVLINIDPNAKGWMDW 144
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|2QMQ|A Chain A, Crystal Structure Of A N-Myc Downstream Regulated 2
Protein (Ndrg2, Syld, Ndr2, Ai182517, Au040374) From Mus
Musculus At 1.70 A Resolution
Length = 286
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 99 LIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLRKKEIDW 156
L D I + Q+L G G+ + Y+L HPD V GLVL I K +DW
Sbjct: 97 LADMIPCILQYLNFSTIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDPNAKGWMDW 154
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR++ D +G G+S+ +++ L ++ L + + G WG L +
Sbjct: 67 YRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMA 126
Query: 132 LAHPDKVTGL 141
L +P++V +
Sbjct: 127 LFYPERVRAV 136
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR++ D +G G+S+ +++ L ++ L + + G WG L +
Sbjct: 82 YRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMA 141
Query: 132 LAHPDKVTGL 141
L +P++V +
Sbjct: 142 LFYPERVRAV 151
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|1A8Q|A Chain A, Bromoperoxidase A1
Length = 274
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 26 ILKVSDIHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDF-YRIILFDQRGAGK 84
I D I+++ G G PVVF+HG P G ++ D YR I D+RG G
Sbjct: 2 ICTTRDGVEIFYKDWGQ--GRPVVFIHGWPLNGDAWQDQLKAVVDAGYRGIAHDRRGHGH 59
Query: 85 STP 87
STP
Sbjct: 60 STP 62
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 19 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 72
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 73 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 123
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 75
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 76 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS D+
Sbjct: 19 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKS------DKP 72
Query: 95 TTWDLIDD----IEKLRQHLEIPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
DD ++ + L + E + WGS L ++ +P++V G+
Sbjct: 73 DLDYFFDDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 123
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
YR++ D +G G+S+ +++ L ++ L + + G WG L +
Sbjct: 286 YRVLAMDMKGYGESSAPPEIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGMLVWYMA 345
Query: 132 LAHPDKVTGL 141
L +P++V +
Sbjct: 346 LFYPERVRAV 355
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/70 (20%), Positives = 31/70 (44%)
Query: 72 YRIILFDQRGAGKSTPHACLDQNTTWDLIDDIEKLRQHLEIPEWQVFGGSWGSTLALAYS 131
+R++ D +G G S+ +++ L ++ L IP+ G W + +
Sbjct: 284 FRVLAIDMKGYGDSSSPPEIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMVWNMA 343
Query: 132 LAHPDKVTGL 141
L +P++V +
Sbjct: 344 LFYPERVRAV 353
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 24/180 (13%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPHACL 91
I+W+ G H +V LHG G R D + + + L D G G+S L
Sbjct: 4 IWWQTKGQGNVH-LVLLHGW---GLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGFGAL 59
Query: 92 DQNTTWDLIDDIEKLRQHLEIPEWQV-FGGSWGSTLALAYSLAHPDKVTGLVLRGIFLLR 150
L D E + Q + P+ + G S G +A +L HP++V LV
Sbjct: 60 S------LADXAEAVLQ--QAPDKAIWLGWSLGGLVASQIALTHPERVRALVTVASSPCF 111
Query: 151 KKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKETQYAAARAWTK 210
+W I PD F+ + ++++ + L + ET ARA K
Sbjct: 112 SARDEW------PGIKPDVLAGFQQQLSDDQQRTVERFLA--LQTXGTETARQDARALKK 163
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422
Length = 213
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 8/110 (7%)
Query: 35 IYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDFYRIILFDQRGAGKSTPHACLDQN 94
+++ G G PV+FLHG P N +R I D G GKS +
Sbjct: 22 MHYVDVGPRDGTPVLFLHGNPTSSYLWRNIIPHVAPSHRCIAPDLIGMGKSD-----KPD 76
Query: 95 TTWDLIDDIEKLRQHLE---IPEWQVFGGSWGSTLALAYSLAHPDKVTGL 141
+ D + L +E + E + WGS L ++ +P++V G+
Sbjct: 77 LDYFFDDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGI 126
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 141 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 197
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 198 PAYATRYAITVW 209
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 147 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 203
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 204 PAYATRYAITVW 215
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 141 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 197
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 198 PAYATRYAITVW 209
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 140 GLVLRGIFLLRKKEIDWFYEGGAAAIYPDAWESFRDLIPENERSCFVDAYSKRLNSDDKE 199
G + I+ L K+ D GG I+P+ F D+ P+ +R F +S R N + +
Sbjct: 142 GRCVTCIYYL-NKDWDAKVSGGILRIFPEGKAQFADIEPKFDRLLFF--WSDRRNPHEVQ 198
Query: 200 TQYAAARAWTKW 211
YA A T W
Sbjct: 199 PAYATRYAITVW 210
>pdb|2B0C|A Chain A, The Crystal Structure Of The Putative Phosphatase From
Escherichia Coli
Length = 206
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 238 ARIENHYFLNKGFFPSDS-FLLDNIDNIRHIN 268
ARI H +GF PSD+ F DN DNI N
Sbjct: 151 ARIYQHVLQAEGFSPSDTVFFDDNADNIEGAN 182
>pdb|4ETW|A Chain A, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|C Chain C, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 264
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Query: 32 IHTIYWEQSGNPTGHPVVFLHGGPGGGTTPSNRRFFDPDF---YRIILFDQRGAGKSTPH 88
++ I+W+ G H +V LHG G R D + + + L D G G+S
Sbjct: 1 MNNIWWQTKGQGNVH-LVLLHGW---GLNAEVWRCIDEELSSHFTLHLVDLPGFGRSRGF 56
Query: 89 ACLDQNTTWDLIDDIEKLRQHLEIPEWQV-FGGSWGSTLALAYSLAHPDKVTGLV 142
L L D E + Q + P+ + G + G +A +L HP++V LV
Sbjct: 57 GALS------LADMAEAVLQ--QAPDKAIWLGWALGGLVASQIALTHPERVQALV 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,852,184
Number of Sequences: 62578
Number of extensions: 564835
Number of successful extensions: 1431
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 1361
Number of HSP's gapped (non-prelim): 99
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)