Query 020068
Match_columns 331
No_of_seqs 179 out of 1659
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1581 UDP-galactose transpor 100.0 1.3E-54 2.8E-59 376.4 29.5 320 2-325 1-323 (327)
2 KOG1580 UDP-galactose transpor 100.0 7.7E-52 1.7E-56 346.0 15.8 311 4-320 4-318 (337)
3 PF08449 UAA: UAA transporter 100.0 2.1E-47 4.6E-52 349.9 29.4 299 15-321 2-303 (303)
4 KOG1582 UDP-galactose transpor 100.0 7.4E-45 1.6E-49 309.8 17.7 296 8-318 38-335 (367)
5 TIGR00817 tpt Tpt phosphate/ph 100.0 4E-34 8.7E-39 262.2 25.7 287 12-319 1-297 (302)
6 PTZ00343 triose or hexose phos 100.0 1.4E-32 3E-37 256.2 30.6 290 9-317 45-350 (350)
7 KOG1583 UDP-N-acetylglucosamin 100.0 3.8E-35 8.3E-40 251.2 10.0 296 13-321 3-320 (330)
8 KOG1441 Glucose-6-phosphate/ph 100.0 5.6E-34 1.2E-38 256.5 13.3 303 2-323 6-315 (316)
9 KOG1443 Predicted integral mem 100.0 4.9E-29 1.1E-33 216.8 20.2 292 7-313 6-313 (349)
10 PLN00411 nodulin MtN21 family 100.0 3.3E-26 7.1E-31 212.9 30.3 309 6-327 6-340 (358)
11 KOG1444 Nucleotide-sugar trans 100.0 2E-26 4.2E-31 203.4 23.9 287 23-325 18-310 (314)
12 PF06027 DUF914: Eukaryotic pr 99.9 4.8E-25 1E-29 201.2 24.6 267 46-320 39-310 (334)
13 KOG1442 GDP-fucose transporter 99.9 3.9E-28 8.4E-33 208.0 2.4 312 2-327 17-339 (347)
14 PRK11453 O-acetylserine/cystei 99.9 9.7E-24 2.1E-28 193.1 31.2 256 50-318 32-290 (299)
15 PRK11689 aromatic amino acid e 99.9 2.4E-23 5.2E-28 190.1 28.0 254 50-318 32-290 (295)
16 PRK11272 putative DMT superfam 99.9 6.1E-23 1.3E-27 187.2 30.6 281 9-318 4-288 (292)
17 PRK15430 putative chlorampheni 99.9 1.4E-22 3E-27 185.2 30.3 280 11-323 6-293 (296)
18 TIGR00950 2A78 Carboxylate/Ami 99.9 8.8E-23 1.9E-27 182.9 26.2 243 47-310 15-259 (260)
19 PRK10532 threonine and homoser 99.9 2.1E-22 4.5E-27 183.8 26.9 271 15-319 14-285 (293)
20 COG5070 VRG4 Nucleotide-sugar 99.9 8.3E-23 1.8E-27 170.4 16.1 292 23-322 12-303 (309)
21 TIGR03340 phn_DUF6 phosphonate 99.8 1.6E-19 3.4E-24 163.9 21.7 210 86-312 68-280 (281)
22 COG0697 RhaT Permeases of the 99.8 4.7E-17 1E-21 147.4 29.7 247 50-316 36-288 (292)
23 PF04142 Nuc_sug_transp: Nucle 99.8 2.9E-18 6.4E-23 151.4 19.0 221 80-306 16-244 (244)
24 TIGR00688 rarD rarD protein. T 99.8 3.5E-16 7.5E-21 140.1 25.7 238 18-290 7-255 (256)
25 KOG2234 Predicted UDP-galactos 99.7 3.3E-15 7.2E-20 134.3 27.3 231 82-320 93-327 (345)
26 TIGR00803 nst UDP-galactose tr 99.7 2.5E-17 5.4E-22 144.3 11.8 204 105-313 2-222 (222)
27 PF03151 TPT: Triose-phosphate 99.7 2.9E-16 6.4E-21 129.3 14.6 142 172-315 1-153 (153)
28 KOG4510 Permease of the drug/m 99.7 4.7E-18 1E-22 145.8 3.7 259 50-320 64-330 (346)
29 KOG3912 Predicted integral mem 99.7 4.3E-15 9.4E-20 128.5 20.6 289 23-315 13-334 (372)
30 TIGR00776 RhaT RhaT L-rhamnose 99.7 2.9E-14 6.3E-19 129.8 25.9 212 89-315 67-288 (290)
31 COG5006 rhtA Threonine/homoser 99.7 2.7E-14 5.8E-19 122.1 20.8 246 50-319 40-286 (292)
32 COG2962 RarD Predicted permeas 99.7 4.8E-13 1E-17 117.3 28.2 251 50-324 34-292 (293)
33 KOG2765 Predicted membrane pro 99.6 2.6E-15 5.5E-20 135.0 8.9 224 89-318 167-393 (416)
34 KOG2766 Predicted membrane pro 99.4 1.1E-14 2.4E-19 124.5 -0.1 254 47-314 45-298 (336)
35 PF00892 EamA: EamA-like trans 99.1 1.8E-09 4E-14 85.0 10.8 123 182-314 2-125 (126)
36 COG2510 Predicted membrane pro 99.0 2.6E-09 5.6E-14 82.4 7.9 133 173-313 5-137 (140)
37 PF13536 EmrE: Multidrug resis 98.9 1.2E-08 2.6E-13 79.6 10.1 101 56-157 3-110 (113)
38 PF06800 Sugar_transport: Suga 98.9 3.9E-07 8.5E-12 80.8 20.1 211 84-311 48-267 (269)
39 PF00892 EamA: EamA-like trans 98.9 9.9E-09 2.2E-13 80.8 8.3 117 26-152 4-125 (126)
40 PRK15430 putative chlorampheni 98.8 3.9E-07 8.5E-12 83.3 16.9 140 168-314 5-144 (296)
41 TIGR00688 rarD rarD protein. T 98.8 3.2E-07 6.9E-12 82.0 16.0 138 171-314 2-141 (256)
42 PLN00411 nodulin MtN21 family 98.6 2.1E-06 4.5E-11 80.4 15.0 136 14-157 190-332 (358)
43 TIGR03340 phn_DUF6 phosphonate 98.5 1.1E-06 2.4E-11 79.7 12.4 133 173-315 3-135 (281)
44 COG2510 Predicted membrane pro 98.5 2.3E-06 5.1E-11 66.2 10.5 103 50-152 31-138 (140)
45 KOG4314 Predicted carbohydrate 98.4 2.3E-06 4.9E-11 71.3 9.3 218 84-316 56-277 (290)
46 TIGR00950 2A78 Carboxylate/Ami 98.4 1.5E-05 3.3E-10 71.1 14.8 130 12-148 127-259 (260)
47 PF05653 Mg_trans_NIPA: Magnes 98.3 5.8E-07 1.3E-11 82.0 5.4 224 85-317 53-294 (300)
48 PF13536 EmrE: Multidrug resis 98.3 1.4E-05 3E-10 62.2 12.5 105 210-319 5-110 (113)
49 PRK02971 4-amino-4-deoxy-L-ara 98.3 1.8E-05 3.9E-10 62.9 12.2 118 171-315 2-122 (129)
50 PRK11272 putative DMT superfam 98.2 3.6E-05 7.7E-10 70.3 14.1 133 13-155 150-287 (292)
51 COG2962 RarD Predicted permeas 98.2 5.2E-05 1.1E-09 67.2 13.8 142 169-318 5-147 (293)
52 PF03151 TPT: Triose-phosphate 98.1 8.4E-05 1.8E-09 60.7 13.0 133 18-152 5-152 (153)
53 PRK15051 4-amino-4-deoxy-L-ara 98.1 1.7E-05 3.6E-10 61.5 7.5 63 90-152 46-108 (111)
54 PTZ00343 triose or hexose phos 98.0 0.00012 2.7E-09 68.5 13.8 138 169-314 47-185 (350)
55 TIGR00817 tpt Tpt phosphate/ph 98.0 0.00017 3.6E-09 66.1 13.7 123 182-313 13-135 (302)
56 PRK11453 O-acetylserine/cystei 98.0 0.00028 6.1E-09 64.6 14.9 123 174-314 7-131 (299)
57 PRK10532 threonine and homoser 97.9 0.00042 9.1E-09 63.2 15.5 133 14-156 149-284 (293)
58 PRK11689 aromatic amino acid e 97.9 0.00026 5.6E-09 64.7 14.0 129 171-314 4-136 (295)
59 PF08449 UAA: UAA transporter 97.9 0.00012 2.7E-09 67.1 11.6 129 186-323 15-144 (303)
60 PRK15051 4-amino-4-deoxy-L-ara 97.9 0.00013 2.8E-09 56.5 9.4 60 254-313 48-107 (111)
61 PRK13499 rhamnose-proton sympo 97.7 0.029 6.3E-07 52.0 23.6 226 86-315 78-341 (345)
62 PRK10452 multidrug efflux syst 97.6 0.0013 2.9E-08 51.4 11.6 73 83-155 32-105 (120)
63 TIGR00776 RhaT RhaT L-rhamnose 97.6 0.00086 1.9E-08 61.1 11.7 131 12-153 151-288 (290)
64 PF06027 DUF914: Eukaryotic pr 97.6 0.00079 1.7E-08 62.2 11.3 77 243-319 79-155 (334)
65 PRK02971 4-amino-4-deoxy-L-ara 97.6 0.00043 9.2E-09 55.0 8.2 72 84-155 50-124 (129)
66 PRK13499 rhamnose-proton sympo 97.5 0.0019 4.1E-08 59.8 13.2 140 168-316 4-154 (345)
67 COG0697 RhaT Permeases of the 97.4 0.004 8.8E-08 55.9 13.8 142 169-319 5-147 (292)
68 PRK10650 multidrug efflux syst 97.4 0.0042 9.2E-08 47.7 11.3 68 84-151 38-106 (109)
69 PRK11431 multidrug efflux syst 97.4 0.0034 7.4E-08 47.9 10.6 71 82-152 30-101 (105)
70 COG4975 GlcU Putative glucose 97.3 5.5E-05 1.2E-09 65.3 0.4 210 88-314 66-284 (288)
71 COG2076 EmrE Membrane transpor 97.3 0.0035 7.6E-08 47.5 10.0 72 82-153 31-103 (106)
72 PRK09541 emrE multidrug efflux 97.3 0.0051 1.1E-07 47.4 11.1 70 85-154 34-104 (110)
73 PF04142 Nuc_sug_transp: Nucle 97.3 0.00067 1.5E-08 60.1 6.6 75 246-320 20-94 (244)
74 PRK10650 multidrug efflux syst 97.2 0.013 2.8E-07 45.0 12.0 60 254-313 46-106 (109)
75 PRK10452 multidrug efflux syst 97.1 0.002 4.4E-08 50.3 7.3 64 254-317 41-105 (120)
76 PRK09541 emrE multidrug efflux 97.0 0.0046 1E-07 47.6 8.1 62 255-316 42-104 (110)
77 PF06800 Sugar_transport: Suga 97.0 0.018 3.8E-07 51.5 12.5 119 11-140 136-254 (269)
78 KOG2922 Uncharacterized conser 97.0 0.0028 6E-08 57.1 7.3 215 87-314 69-305 (335)
79 PF04657 DUF606: Protein of un 96.9 0.039 8.4E-07 44.4 13.0 130 173-311 3-137 (138)
80 PRK11431 multidrug efflux syst 96.9 0.009 1.9E-07 45.6 8.4 60 254-313 40-100 (105)
81 COG2076 EmrE Membrane transpor 96.7 0.013 2.7E-07 44.5 8.1 61 255-315 42-103 (106)
82 PF00893 Multi_Drug_Res: Small 96.6 0.019 4.1E-07 42.9 8.5 57 88-144 36-93 (93)
83 PF05653 Mg_trans_NIPA: Magnes 96.5 0.022 4.8E-07 52.1 10.0 118 168-314 4-121 (300)
84 PF00893 Multi_Drug_Res: Small 96.0 0.027 5.8E-07 42.0 6.4 53 254-306 40-93 (93)
85 TIGR00803 nst UDP-galactose tr 95.9 0.099 2.1E-06 45.5 10.6 65 86-150 157-221 (222)
86 KOG2234 Predicted UDP-galactos 95.6 0.28 6.1E-06 45.1 12.3 64 255-318 104-167 (345)
87 PF10639 UPF0546: Uncharacteri 95.5 0.023 5.1E-07 43.8 4.4 69 83-151 43-112 (113)
88 KOG4510 Permease of the drug/m 95.5 0.0056 1.2E-07 53.8 1.1 70 247-316 101-170 (346)
89 COG3238 Uncharacterized protei 95.2 0.44 9.6E-06 38.6 11.1 138 171-316 5-147 (150)
90 KOG1441 Glucose-6-phosphate/ph 95.1 0.077 1.7E-06 48.7 7.2 141 11-156 161-310 (316)
91 COG5006 rhtA Threonine/homoser 94.9 1 2.2E-05 39.7 13.0 59 95-153 224-282 (292)
92 COG4975 GlcU Putative glucose 94.6 0.011 2.3E-07 51.5 0.4 135 172-321 3-142 (288)
93 PF04657 DUF606: Protein of un 94.4 0.55 1.2E-05 37.7 9.8 101 49-150 29-138 (138)
94 PF07857 DUF1632: CEO family ( 94.3 0.087 1.9E-06 46.8 5.3 134 172-322 1-141 (254)
95 PF06379 RhaT: L-rhamnose-prot 94.2 2.6 5.6E-05 38.9 14.7 142 168-317 4-155 (344)
96 PF10639 UPF0546: Uncharacteri 93.4 0.11 2.3E-06 40.2 3.8 60 253-312 51-111 (113)
97 KOG1581 UDP-galactose transpor 91.0 2 4.4E-05 38.8 9.3 120 27-153 186-313 (327)
98 KOG2765 Predicted membrane pro 90.8 0.15 3.3E-06 47.1 2.1 74 247-320 163-236 (416)
99 KOG3912 Predicted integral mem 89.4 0.85 1.8E-05 40.8 5.5 66 249-314 92-157 (372)
100 KOG1580 UDP-galactose transpor 87.5 0.63 1.4E-05 40.5 3.4 74 79-152 239-312 (337)
101 KOG1582 UDP-galactose transpor 87.0 3.2 6.9E-05 37.0 7.5 136 12-156 189-335 (367)
102 KOG4314 Predicted carbohydrate 86.1 0.94 2E-05 38.3 3.6 61 254-314 64-124 (290)
103 KOG1444 Nucleotide-sugar trans 81.9 24 0.00052 32.3 11.0 135 173-314 14-148 (314)
104 COG5070 VRG4 Nucleotide-sugar 79.0 19 0.00041 31.3 8.8 73 83-155 226-298 (309)
105 COG3238 Uncharacterized protei 77.4 35 0.00076 27.8 9.6 102 49-151 33-144 (150)
106 PF05297 Herpes_LMP1: Herpesvi 76.9 0.78 1.7E-05 40.8 0.0 75 127-211 70-145 (381)
107 KOG4831 Unnamed protein [Funct 76.7 3.6 7.8E-05 31.1 3.4 69 83-151 54-123 (125)
108 KOG2922 Uncharacterized conser 72.6 2.2 4.7E-05 38.9 1.7 124 166-318 16-139 (335)
109 cd01324 cbb3_Oxidase_CcoQ Cyto 70.0 3.5 7.5E-05 26.5 1.8 29 302-330 18-46 (48)
110 PF15099 PIRT: Phosphoinositid 69.2 6.2 0.00013 30.8 3.3 21 292-312 74-94 (129)
111 PF05545 FixQ: Cbb3-type cytoc 66.8 5.7 0.00012 25.5 2.3 29 302-330 17-45 (49)
112 COG3169 Uncharacterized protei 66.8 15 0.00031 27.4 4.6 30 284-313 84-113 (116)
113 KOG2766 Predicted membrane pro 66.8 2 4.2E-05 38.0 0.1 67 247-313 82-148 (336)
114 PF06946 Phage_holin_5: Phage 66.1 47 0.001 24.6 7.2 68 261-328 22-93 (93)
115 PF04342 DUF486: Protein of un 65.3 6.2 0.00013 29.8 2.5 29 284-312 77-105 (108)
116 PRK02237 hypothetical protein; 62.6 39 0.00085 25.7 6.4 45 271-315 61-105 (109)
117 PF02694 UPF0060: Uncharacteri 57.5 50 0.0011 25.1 6.1 45 271-315 59-103 (107)
118 PF04971 Lysis_S: Lysis protei 54.1 18 0.00039 25.0 3.0 29 293-321 26-60 (68)
119 PRK02237 hypothetical protein; 52.0 28 0.0006 26.5 4.0 35 121-155 73-107 (109)
120 PF07857 DUF1632: CEO family ( 50.7 1.8E+02 0.004 25.9 13.7 97 50-153 27-134 (254)
121 PF07168 Ureide_permease: Urei 48.2 12 0.00026 34.0 1.9 62 254-318 83-149 (336)
122 PF04246 RseC_MucC: Positive r 47.6 37 0.0008 26.8 4.5 10 277-286 75-84 (135)
123 PF02694 UPF0060: Uncharacteri 47.5 28 0.0006 26.5 3.4 35 121-155 71-105 (107)
124 PF04342 DUF486: Protein of un 45.9 1.3E+02 0.0029 22.8 8.9 34 117-150 72-105 (108)
125 COG3086 RseC Positive regulato 44.5 78 0.0017 25.5 5.7 24 267-290 72-95 (150)
126 KOG1583 UDP-N-acetylglucosamin 42.8 37 0.0008 30.6 4.0 36 119-154 280-315 (330)
127 PF07444 Ycf66_N: Ycf66 protei 40.1 34 0.00074 24.8 2.9 26 294-319 4-29 (84)
128 PRK06638 NADH:ubiquinone oxido 39.3 2.4E+02 0.0052 24.0 9.2 49 169-222 28-76 (198)
129 COG3169 Uncharacterized protei 39.0 53 0.0011 24.6 3.7 31 122-152 84-114 (116)
130 PRK12437 prolipoprotein diacyl 35.5 25 0.00053 31.7 1.9 23 295-317 235-257 (269)
131 PF14981 FAM165: FAM165 family 35.2 59 0.0013 20.5 2.9 18 304-321 21-38 (51)
132 PRK00052 prolipoprotein diacyl 33.5 32 0.0007 30.9 2.3 23 294-316 236-258 (269)
133 PRK05886 yajC preprotein trans 33.5 48 0.001 25.4 2.9 12 305-316 11-22 (109)
134 PF15099 PIRT: Phosphoinositid 33.3 31 0.00067 27.0 1.8 14 301-314 90-103 (129)
135 PF05961 Chordopox_A13L: Chord 33.3 31 0.00068 23.7 1.7 22 299-320 6-27 (68)
136 PF06379 RhaT: L-rhamnose-prot 32.7 4.2E+02 0.0091 24.8 13.8 106 83-189 75-191 (344)
137 COG1742 Uncharacterized conser 31.1 58 0.0013 24.6 2.9 34 122-155 73-106 (109)
138 PF01066 CDP-OH_P_transf: CDP- 30.0 1.4E+02 0.0031 22.0 5.1 51 272-325 5-55 (101)
139 PF06966 DUF1295: Protein of u 29.9 2.3E+02 0.0049 24.8 7.1 33 293-325 115-147 (235)
140 PF08627 CRT-like: CRT-like; 29.9 89 0.0019 24.6 3.8 55 7-68 51-105 (130)
141 PF04995 CcmD: Heme exporter p 29.8 81 0.0017 19.9 3.1 21 302-322 13-33 (46)
142 COG0682 Lgt Prolipoprotein dia 29.4 45 0.00098 30.3 2.5 31 297-327 254-284 (287)
143 COG4736 CcoQ Cbb3-type cytochr 28.9 61 0.0013 21.9 2.5 28 300-327 15-42 (60)
144 PF15108 TMEM37: Voltage-depen 28.0 2.2E+02 0.0047 23.4 5.8 51 168-218 119-169 (184)
145 PF14880 COX14: Cytochrome oxi 27.2 57 0.0012 21.9 2.1 23 294-316 15-37 (59)
146 MTH00057 ND6 NADH dehydrogenas 27.0 3.8E+02 0.0083 22.5 7.8 22 201-222 52-73 (186)
147 PRK14766 lipoprotein signal pe 26.9 50 0.0011 28.3 2.3 6 252-257 116-121 (201)
148 PF13038 DUF3899: Domain of un 26.5 82 0.0018 23.0 3.1 19 297-315 4-22 (92)
149 PF09577 Spore_YpjB: Sporulati 25.1 97 0.0021 27.2 3.8 28 301-328 204-232 (232)
150 PF10855 DUF2648: Protein of u 24.7 84 0.0018 18.2 2.2 20 302-321 5-24 (33)
151 KOG4831 Unnamed protein [Funct 24.2 92 0.002 23.7 2.9 59 254-312 63-122 (125)
152 TIGR03141 cytochro_ccmD heme e 23.7 1.4E+02 0.0029 18.7 3.3 19 304-322 16-34 (45)
153 PRK13108 prolipoprotein diacyl 23.6 3.9E+02 0.0085 26.1 7.9 23 295-317 254-276 (460)
154 KOG1442 GDP-fucose transporter 23.6 17 0.00037 32.7 -1.2 55 258-312 117-171 (347)
155 TIGR00544 lgt prolipoprotein d 23.5 59 0.0013 29.4 2.2 24 295-318 246-269 (278)
156 PF11346 DUF3149: Protein of u 23.5 99 0.0021 19.3 2.5 31 291-321 7-38 (42)
157 PF13994 PgaD: PgaD-like prote 22.3 1.4E+02 0.003 23.8 3.9 27 296-322 62-88 (138)
158 PF07226 DUF1422: Protein of u 22.0 3.8E+02 0.0082 20.7 10.3 19 1-19 1-19 (117)
159 COG1862 YajC Preprotein transl 21.9 96 0.0021 23.2 2.7 10 304-313 15-24 (97)
160 KOG1631 Translocon-associated 21.5 68 0.0015 27.9 2.0 24 304-327 194-217 (261)
161 PF03023 MVIN: MviN-like prote 21.3 2.5E+02 0.0054 27.2 6.2 22 44-65 310-331 (451)
162 PF09656 PGPGW: Putative trans 20.2 2.7E+02 0.0058 18.3 5.2 44 137-195 5-48 (53)
163 COG3162 Predicted membrane pro 20.2 3.9E+02 0.0084 20.1 6.8 57 12-71 27-84 (102)
164 PHA03049 IMV membrane protein; 20.1 70 0.0015 22.0 1.4 22 299-320 6-27 (68)
No 1
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-54 Score=376.36 Aligned_cols=320 Identities=50% Similarity=0.817 Sum_probs=297.0
Q ss_pred CCCCCC--chhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc-cCCCC
Q 020068 2 ENHGSG--FRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWS-SSAGG 78 (331)
Q Consensus 2 ~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~-~~~~~ 78 (331)
|-||.. .++..++++|+.|++.+|+.||++||++.+.+|++|+++|++|.++.++|.+.+.++++.+...++ +...+
T Consensus 1 ~~~~~~~~~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~ 80 (327)
T KOG1581|consen 1 ESVNSGGMANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGV 80 (327)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 667777 778899999999999999999999999999999999999999999999999999999988776655 34567
Q ss_pred CchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCc
Q 020068 79 APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSS 158 (331)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~ 158 (331)
.||++|..+++.+..+.++.++||+|+++|++++.|+++.+|||+++.+++|+|++.+++++.+++..|+.++...+.++
T Consensus 81 apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 81 APLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred CchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999876544
Q ss_pred cccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhh
Q 020068 159 KTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQ 238 (331)
Q Consensus 159 ~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (331)
..++..+++..+|+.++..++.+||+++..||++++++ +.+++++|+++|+++++..+...+ ..|.+.++++|...
T Consensus 161 -s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~vNLf~~i~~~~~li--~qg~~~~av~F~~~ 236 (327)
T KOG1581|consen 161 -SSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFGVNLFSAILNGTYLI--LQGHLLPAVSFIKE 236 (327)
T ss_pred -CccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHHHHHHHHHHHHHhhh--cCCCCchHHHHHHc
Confidence 22344456889999999999999999999999999988 999999999999999999999877 88889999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 239 HPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
||+.++++++++.|+++||.++|+.++++||++.+++++.|+++++++|.++|||++++.||.|+.++++|+.+..+.|+
T Consensus 237 hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~ 316 (327)
T KOG1581|consen 237 HPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKK 316 (327)
T ss_pred ChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhh
Q 020068 319 RKLQRLQ 325 (331)
Q Consensus 319 ~~~~~~~ 325 (331)
|+++.++
T Consensus 317 ~~~~~~~ 323 (327)
T KOG1581|consen 317 KKNQPRK 323 (327)
T ss_pred hccCccc
Confidence 8433333
No 2
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.7e-52 Score=345.98 Aligned_cols=311 Identities=30% Similarity=0.502 Sum_probs=281.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC---CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc-cCCCCC
Q 020068 4 HGSGFRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFG---PDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWS-SSAGGA 79 (331)
Q Consensus 4 ~~~~~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~---~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~-~~~~~~ 79 (331)
-.+...+..++.+|.+|+++||..||+.||++.+..|+ ++.++|++.+.++|+|+..+.+++-+...+++ .+.++.
T Consensus 4 ~~s~lper~rf~ica~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~t 83 (337)
T KOG1580|consen 4 VRSWLPERGRFLICAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDNT 83 (337)
T ss_pred cccccccccceeEEecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccCC
Confidence 34455667899999999999999999999999998876 35579999999999999999999866555544 456778
Q ss_pred chHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcc
Q 020068 80 PWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSK 159 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~ 159 (331)
|.+.|...++.|.+.+..+|.+++|+|+|++++-||++|||||+++.++.+|+|+|+++.++++++.|++++.+++.+..
T Consensus 84 ~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~ 163 (337)
T KOG1580|consen 84 PTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG 163 (337)
T ss_pred cchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999875432
Q ss_pred ccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhC
Q 020068 160 TISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQH 239 (331)
Q Consensus 160 ~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 239 (331)
+.++.....|-+++++|..+|++....|||+.+.| ..+..++|+|+|+++.+.+....+ ++||+++.+.|.+.|
T Consensus 164 ---g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~y-q~~g~~MM~~~NlwStL~Lg~g~l--fTGElweF~yF~~Rh 237 (337)
T KOG1580|consen 164 ---GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASY-QRTGTSMMFYTNLWSTLYLGAGLL--FTGELWEFFYFVQRH 237 (337)
T ss_pred ---CCcccccchHHHHHHHHHHhcccchhHHHHHHHhh-ccCchhhHHHHHHHHHHHhhhhhe--ehhhHHHHHHHHHhc
Confidence 22334456899999999999999999999999988 778899999999999999988777 899999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 240 PEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
|..|+.+.++++++++||.++|..+..+||++.|++++.|+.++++.|+++|+++++..||+|..+++.|........+|
T Consensus 238 P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 238 PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776554
Q ss_pred H
Q 020068 320 K 320 (331)
Q Consensus 320 ~ 320 (331)
.
T Consensus 318 a 318 (337)
T KOG1580|consen 318 A 318 (337)
T ss_pred C
Confidence 4
No 3
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=100.00 E-value=2.1e-47 Score=349.85 Aligned_cols=299 Identities=36% Similarity=0.605 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHHHh
Q 020068 15 AFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWS-SSAGGAPWWTYWSAGITNTI 93 (331)
Q Consensus 15 ~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (331)
++|++|+|++|+.++++||++.+.+++ .++|.++++.|+.++++.+.+.....+ +++++.|+++|++.++++.+
T Consensus 2 ~~~~~~i~~~~~~~g~~qE~i~~~~~~-----~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (303)
T PF08449_consen 2 LICVAGIFGGCCSYGILQEKIMTTPYG-----SPFPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFL 76 (303)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHcCCCC-----CcccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHH
Confidence 578999999999999999999987653 268999999999999999988877666 56788899999999999999
Q ss_pred hhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhH
Q 020068 94 GPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGY 173 (331)
Q Consensus 94 ~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~ 173 (331)
++.++|.|++|+|+|+++++|+++|+++|+++.+++|||++++|+++++++++|++++..+|.+++++++........|+
T Consensus 77 ~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~ 156 (303)
T PF08449_consen 77 ASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGI 156 (303)
T ss_pred HHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999987655433222222334499
Q ss_pred HHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcC--CCChHHHHHHhhhCchHHHHHHHHHH
Q 020068 174 GLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWP--HGSGFEAIQFCKQHPEAAWDIFFYCL 251 (331)
Q Consensus 174 ~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (331)
+++++|.++||+.+++|||+++++ +.++.|+++|+|.++.+..++... . .+|..+..++...+|+.+..++..++
T Consensus 157 ~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mfy~n~~~~~~~~~~~~--~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 157 ILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMFYTNLFSLPFLLILLF--LLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHH--HHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999 889999999999999999998877 5 78888888888889998889999999
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHh
Q 020068 252 CGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKL 321 (331)
Q Consensus 252 ~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~ 321 (331)
++++++.+++.+++++||++.++++++||++++++|+++|||++++.||+|+++++.|..+|.+.|+||+
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988864
No 4
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.4e-45 Score=309.82 Aligned_cols=296 Identities=27% Similarity=0.408 Sum_probs=274.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHH
Q 020068 8 FRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQ-HLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWS 86 (331)
Q Consensus 8 ~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~-~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (331)
.+|++|+++|++|++..|+.||++||.+++. ++|+ +.|.+|+.|++....+.++.+..++.+++.+|||.|..
T Consensus 38 kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~------~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~ 111 (367)
T KOG1582|consen 38 KPKWTQFLICSAGVFFLYLVYGYLQELIFNV------EGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVI 111 (367)
T ss_pred CchhhhHHHHHhHHHHHHHHHHHHHHHHhcc------ccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhh
Confidence 3578999999999999999999999999863 4777 88999999999988888777666667788899999999
Q ss_pred HHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCC
Q 020068 87 AGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAH 166 (331)
Q Consensus 87 ~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~ 166 (331)
++....+.++++|.|+.|+++|+|+++|+|+.+|||+.+.++-++||++.++.+..+++.|++.++..|... ++
T Consensus 112 la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~------sP 185 (367)
T KOG1582|consen 112 LAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQT------SP 185 (367)
T ss_pred hHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhccccc------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988654 46
Q ss_pred CCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCch-HHHH
Q 020068 167 PNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPE-AAWD 245 (331)
Q Consensus 167 ~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 245 (331)
+++..|+.++..|+++||..++.||+.++.+ +.+..|+.+|...++.+..+..++ .+||+.+++.+...||. ....
T Consensus 186 NF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~-~~ss~EmvfySy~iG~vflf~~mv--lTge~f~a~~fcaehp~~tyGy 262 (367)
T KOG1582|consen 186 NFNLIGVMMISGALLADAVIGNVQEKAMKMN-PASSSEMVFYSYGIGFVFLFAPMV--LTGELFSAWTFCAEHPVRTYGY 262 (367)
T ss_pred CcceeeHHHHHHHHHHHHHhhHHHHHHHhhC-CCCcceEEEeeecccHHHHHHHHH--hcccchhhhHHHHhCcHhHHHH
Confidence 8999999999999999999999999999988 678899999999999999998887 89999999999888886 5667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 246 IFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 246 i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
.++.+..+++|+.+....++.+||.+++.+++.||.+|+++|+++|.+|+|..+.-|..+++.|++++.+.|+
T Consensus 263 ~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 263 AFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 7888999999999999999999999999999999999999999999999999999999999999999998873
No 5
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=4e-34 Score=262.18 Aligned_cols=287 Identities=14% Similarity=0.084 Sum_probs=226.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc---CCCCCchHHHHHHH
Q 020068 12 LLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSS---SAGGAPWWTYWSAG 88 (331)
Q Consensus 12 ~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~ 88 (331)
++..+.++.||.....+.++||.+++ .|++|.++++.|+.++++...+......+ +.+++.++..++.|
T Consensus 1 ~~~~~~~~~w~~~~~~~~~~NK~~l~--------~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 72 (302)
T TIGR00817 1 LQTGLLFGLWYFLNVYFNIYNKKLLN--------VFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVA 72 (302)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh--------hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 35677888999999999999988863 58899999999999988776655322111 22344567788999
Q ss_pred HHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCC
Q 020068 89 ITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPN 168 (331)
Q Consensus 89 ~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~ 168 (331)
++.+.+..++|.|++|++++++++++++.|+++++++.+++|||++++++.+++++++|+.+...++ .++
T Consensus 73 ~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~----------~~~ 142 (302)
T TIGR00817 73 IVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE----------LSF 142 (302)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc----------ccc
Confidence 9988899999999999999999999999999999999999999999999999999999998765322 135
Q ss_pred CchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChH-HHHHHhh----hCchHH
Q 020068 169 APLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGF-EAIQFCK----QHPEAA 243 (331)
Q Consensus 169 ~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~ 243 (331)
+..|++++++|.++++++.++.||..++. +.++.+++.|++.++.+...|+.. ..++.. ...++.. ..+...
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~l~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 219 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTNLYAYISIMSLFLLSPPAF--ITEGPPFLPHGFMQAISGVNVTKI 219 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCcccHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHHHhhcccCchHH
Confidence 67899999999999999999999987643 468899999999999998888765 222211 1111111 111111
Q ss_pred HH-HHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 244 WD-IFFYCL-CGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 244 ~~-i~~~~~-~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
+. .+..+. +..+.+.+++.+++++||.++++.++++|++++++|++++||++|+.+++|.++++.|+++|++.|+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 220 YTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 21 222222 22344457788999999999999999999999999999999999999999999999999999876543
No 6
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=1.4e-32 Score=256.18 Aligned_cols=290 Identities=11% Similarity=0.063 Sum_probs=227.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCC-----CchHH
Q 020068 9 RRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGG-----APWWT 83 (331)
Q Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~-----~~~~~ 83 (331)
.+.+|.+..++.||.+.....+.+|.+++ .+++|++++.+|++++++++.+......+++++ ..++.
T Consensus 45 ~~~~~~~~~~~~wy~~s~~~~~~nK~vl~--------~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (350)
T PTZ00343 45 NFKWKLALLFLTWYALNVLYVVDNKLALN--------MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKN 116 (350)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 34799999999999999999999998873 578899999999999988776554332222222 24567
Q ss_pred HHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcccccc
Q 020068 84 YWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISK 163 (331)
Q Consensus 84 ~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~ 163 (331)
.+++|+++.......+.|++++++++++++|++.|+++++++.+++|||++++++.+++++++|+.+...+|.
T Consensus 117 llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~------- 189 (350)
T PTZ00343 117 FLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL------- 189 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-------
Confidence 8999999888777889999999999999999999999999999999999999999999999999999886443
Q ss_pred CCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCC----CCChhhHHHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHh--
Q 020068 164 LAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYP----KTSAWDIMLGMNLWGTIYNLFYMFGWPHG-SGFEAIQFC-- 236 (331)
Q Consensus 164 ~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~-- 236 (331)
++++.|++++++|++++++++++.|+.+++++ +.++.++..++.+++.++.+|+... .++ +........
T Consensus 190 ---~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~e~~~~~~~~~~~~~ 265 (350)
T PTZ00343 190 ---HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLF-FEGKKWVPVWTNYTA 265 (350)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhhh
Confidence 35678999999999999999999999887542 2456667777789999998887641 111 111111000
Q ss_pred hhCc----hHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHH
Q 020068 237 KQHP----EAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 237 ~~~~----~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
.... ..+..++..+++.++-+.+.|++++++||.++++.+++||++++++|++++||++|+.+++|.++++.|+++
T Consensus 266 ~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~l 345 (350)
T PTZ00343 266 NMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALL 345 (350)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHH
Confidence 0001 111112222223334445566799999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 020068 313 QIYLK 317 (331)
Q Consensus 313 ~~~~k 317 (331)
|++.|
T Consensus 346 Ys~~k 350 (350)
T PTZ00343 346 YSLFK 350 (350)
T ss_pred HhhcC
Confidence 98763
No 7
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.8e-35 Score=251.24 Aligned_cols=296 Identities=18% Similarity=0.222 Sum_probs=238.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH
Q 020068 13 LLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNT 92 (331)
Q Consensus 13 ~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (331)
+-+..+.+++++||.+.+..|.+.|..+|. ...+|+.|+++.+.-.++..--....+++.|.|+|+..-.++.
T Consensus 3 ~a~~ai~~vf~GCcsnvv~lE~L~~~~pgs-------gNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF 75 (330)
T KOG1583|consen 3 MAAAAISLVFGGCCSNVVFLELLVRNEPGS-------GNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFF 75 (330)
T ss_pred hHHHHHHHHHHhhhchHHHHHHHHHhCCCC-------eeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheee
Confidence 445678899999999999999999876652 2489999999988887765422223458899999999999999
Q ss_pred hhhHHhHhhhcc-cchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcccc-------ccC
Q 020068 93 IGPAMGIEALKY-ISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTI-------SKL 164 (331)
Q Consensus 93 ~~~~~~~~sl~~-i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~-------~~~ 164 (331)
..+.++|.++++ +|.|.+.++|+.+++.+|++++++.||||+.+|+.+++++.+|+++++..++.+.+. ++.
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~ 155 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSA 155 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcc
Confidence 999999999998 999999999999999999999999999999999999999999999999765433221 101
Q ss_pred CCCCC--chhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhC---
Q 020068 165 AHPNA--PLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQH--- 239 (331)
Q Consensus 165 ~~~~~--~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--- 239 (331)
..+.. ..|+.++..|.+.+|..+++||+..+|| +.++.|.++|++..+.+..+. ..+++.+.+.....+
T Consensus 156 ~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~ky-GKh~~EalFytH~LsLP~Flf-----~~~div~~~~~~~~se~~ 229 (330)
T KOG1583|consen 156 QSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKY-GKHWKEALFYTHFLSLPLFLF-----MGDDIVSHWRLAFKSESY 229 (330)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHhccchHHH-----hcchHHHHHHHHhcCcce
Confidence 11122 3688899999999999999999999999 889999999999999887653 335555544322222
Q ss_pred ---------chHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHH
Q 020068 240 ---------PEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGL 310 (331)
Q Consensus 240 ---------~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv 310 (331)
|..|++++...+..++..--++.+..+++++|.+++-++||.+++++|.++|++++|+.+|+|.++|+.|-
T Consensus 230 ~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt 309 (330)
T KOG1583|consen 230 LIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGT 309 (330)
T ss_pred eccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHH
Confidence 33444454444455554455788899999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHh
Q 020068 311 SYQIYLKWRKL 321 (331)
Q Consensus 311 ~~~~~~k~~~~ 321 (331)
..++-..++.+
T Consensus 310 ~~fa~~~~~~~ 320 (330)
T KOG1583|consen 310 LLFANVWNHPK 320 (330)
T ss_pred HHHHHHHcCcc
Confidence 88765544433
No 8
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=256.54 Aligned_cols=303 Identities=16% Similarity=0.142 Sum_probs=254.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC----C
Q 020068 2 ENHGSGFRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSA----G 77 (331)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~----~ 77 (331)
|+-++..++.++..++...||++......+++.+++. .+|++|.++|.+|+..+++........+-.++ +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~------~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~ 79 (316)
T KOG1441|consen 6 EPASGQLKKILRIGIAFAIWYVLSVGVIILNKYILSK------YGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISS 79 (316)
T ss_pred cCcccccchhHHHHHHHHHHhhhheeeEEeeHhhhcc------CCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccc
Confidence 4445666677888888999999999999999888753 48999999999988887776666544433222 3
Q ss_pred CCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCC
Q 020068 78 GAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTS 157 (331)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~ 157 (331)
+.+++..+++|+++..+.+++|.|++|+|+++++++|+++|+++.+++.++.+|++++..+.++++++.|+.+.+.+|.
T Consensus 80 ~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~- 158 (316)
T KOG1441|consen 80 KLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL- 158 (316)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc-
Confidence 4688999999999999999999999999999999999999999999999999999999999999999999999998664
Q ss_pred ccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHh--hCCCCChhhHHHHHHHHHHHHHH-HHhhhcCCCChHHHHH
Q 020068 158 SKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITA--RYPKTSAWDIMLGMNLWGTIYNL-FYMFGWPHGSGFEAIQ 234 (331)
Q Consensus 158 ~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~ 234 (331)
++++.|++.++.+.+..++++++++++++ ++ +.|+.+++.|+.+++.+..+ |+... .+++......
T Consensus 159 ---------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~-~~~~~~ll~y~ap~s~~~Ll~P~~~~-~~~~~~~~~~ 227 (316)
T KOG1441|consen 159 ---------SFNLFGFISAMISNLAFALRNILSKKLLTSKGE-SLNSMNLLYYTAPISLIFLLIPFLDY-VEGNKFVGFL 227 (316)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-ccCchHHHHHhhhHHHHHHhcchHhh-hcccceeeee
Confidence 58999999999999999999999999984 44 78999999999999999999 76541 2232210000
Q ss_pred HhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 235 FCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
....+.. .......++++++.|...|.+++++||+|.++.+..|.++.++.|+++|+|++|+.|..|+++.+.|+.+|+
T Consensus 228 ~~~~~~~-~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 228 TAPWFVT-FLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred ccccchh-hHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 1011112 223445557888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHH
Q 020068 315 YLKWRKLQR 323 (331)
Q Consensus 315 ~~k~~~~~~ 323 (331)
+.|.|++++
T Consensus 307 ~~k~~~~~~ 315 (316)
T KOG1441|consen 307 RAKLKEKKG 315 (316)
T ss_pred HHhhhhhcc
Confidence 998887664
No 9
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.97 E-value=4.9e-29 Score=216.82 Aligned_cols=292 Identities=17% Similarity=0.209 Sum_probs=230.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccC----CCCCchH
Q 020068 7 GFRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSS----AGGAPWW 82 (331)
Q Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~----~~~~~~~ 82 (331)
.|++.++-....++.+..|-..++.....+|+. +.+|++|++++.+|.++-.+++...++..+++ +.+..|+
T Consensus 6 ~~~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~----~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~ 81 (349)
T KOG1443|consen 6 LDNQFLMNRVLTLALVLLYYFLSIGLTFYFKWL----TKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWR 81 (349)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHH
Confidence 344544444444444455555555555555443 24799999999999999998887776554432 2344576
Q ss_pred HHH----HHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCc
Q 020068 83 TYW----SAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSS 158 (331)
Q Consensus 83 ~~~----~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~ 158 (331)
+++ |.|++.+.+.+++|+|++|++++.|++.||++++|+.+++.++--|+++|.-...++++.+|++++++++.
T Consensus 82 ~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-- 159 (349)
T KOG1443|consen 82 DYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-- 159 (349)
T ss_pred HHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc--
Confidence 665 99999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred cccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCC--CCChhhHHHHHHHHHHHHHHHHhhhcCCCChH--HHHH
Q 020068 159 KTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYP--KTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGF--EAIQ 234 (331)
Q Consensus 159 ~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~ 234 (331)
+++..|+.++..|.++.|+++.+.+.++++.+ ..+|.+.+++.++++.+..+|..+. ++|... ..-.
T Consensus 160 --------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~-fEG~~~~~~s~~ 230 (349)
T KOG1443|consen 160 --------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLL-FEGLHLITSSSI 230 (349)
T ss_pred --------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHH-HcccccchhhhH
Confidence 58999999999999999999999888887652 4689999999999999988887652 444211 1111
Q ss_pred HhhhCc-hHHHHHHHHHHHHHHHH---HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHH
Q 020068 235 FCKQHP-EAAWDIFFYCLCGAVGQ---NFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGL 310 (331)
Q Consensus 235 ~~~~~~-~~~~~i~~~~~~~~~~~---~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv 310 (331)
+...++ ..+..+..++.++..++ .+.|....+++..|.++++..|.+.+++++.++.+|.++..+|.|..+++.|+
T Consensus 231 f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi 310 (349)
T KOG1443|consen 231 FRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGI 310 (349)
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHH
Confidence 222222 34444444455544333 56788999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 020068 311 SYQ 313 (331)
Q Consensus 311 ~~~ 313 (331)
.++
T Consensus 311 ~~~ 313 (349)
T KOG1443|consen 311 LLH 313 (349)
T ss_pred HHh
Confidence 998
No 10
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.96 E-value=3.3e-26 Score=212.87 Aligned_cols=309 Identities=10% Similarity=0.035 Sum_probs=217.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc--CCCCCchHH
Q 020068 6 SGFRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSS--SAGGAPWWT 83 (331)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~--~~~~~~~~~ 83 (331)
+.++|..+.-.....+-.+|..+.++.+...+. +.+ |..+.++|+.+++++..++...+++ ++++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~-------G~~-~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~ 77 (358)
T PLN00411 6 SLWRREAVFLTAMLATETSVVGISTLFKVATSK-------GLN-IYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSI 77 (358)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHC-------CCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHH
Confidence 446676666666666777777777777777653 222 5678899999998888766544322 223333444
Q ss_pred ---HHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHh------hccccCchhHHHHHHHhhhhhhhccc
Q 020068 84 ---YWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLV------YGIRYTLPEYICTLLVAGGVSSFALM 154 (331)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~------~~e~~~~~~~~~~~~i~~Gv~l~~~~ 154 (331)
+...+++......+.+.+++|++.+.+.++.++.|+++++++.++ +|||.++++++++++.++|+.+....
T Consensus 78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 445555554455678999999999999999999999999999999 69999999999999999999987643
Q ss_pred cCCc--c-----------cc-ccCCCCCC-chhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHH
Q 020068 155 KTSS--K-----------TI-SKLAHPNA-PLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLF 219 (331)
Q Consensus 155 ~~~~--~-----------~~-~~~~~~~~-~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 219 (331)
+... . .. ....+..+ ..|.+++++|++++|++.+.+++..++++ +.....++...++.+...+
T Consensus 158 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~ 235 (358)
T PLN00411 158 HGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSM 235 (358)
T ss_pred cCcccccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHH
Confidence 2110 0 00 00011122 45999999999999999999999888772 2334455555555444443
Q ss_pred HhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchh
Q 020068 220 YMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQ 299 (331)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~ 299 (331)
.... .+++-.... ....+.. ...+++.+++..+++.++++++++.||.++++..++.|++++++|++++||++++.+
T Consensus 236 ~~l~-~~~~~~~~~-~~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~ 312 (358)
T PLN00411 236 IGLV-VEKNNPSVW-IIHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGC 312 (358)
T ss_pred HHHH-HccCCcccc-eeccchH-HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHH
Confidence 3331 211100000 0111222 223455556556788899999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhHHhhhh
Q 020068 300 WGCVLMVFSGLSYQIYLKWRKLQRLQKK 327 (331)
Q Consensus 300 ~~G~~lv~~Gv~~~~~~k~~~~~~~~~~ 327 (331)
++|.++++.|+++..+.|+|+.+.+++.
T Consensus 313 ~iG~~LIl~Gv~l~~~~~~~~~~~~~~~ 340 (358)
T PLN00411 313 LIGGILITLGFYAVMWGKANEEKDQLLS 340 (358)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcccC
Confidence 9999999999999988777765544444
No 11
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-26 Score=203.41 Aligned_cols=287 Identities=15% Similarity=0.126 Sum_probs=234.0
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHh---ccCCCCCchHHHHHHHHHHHhhhHHhH
Q 020068 23 SAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLW---SSSAGGAPWWTYWSAGITNTIGPAMGI 99 (331)
Q Consensus 23 ~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (331)
++|+..+.+...+||.... ..+|+..+++...|.+.+.+..+...+.+ .++.++...|+++|+++.+.++...+-
T Consensus 18 ~~Y~~sS~lm~vvNK~vls--~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~ 95 (314)
T KOG1444|consen 18 LFYCLSSILMTVVNKIVLS--SYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGS 95 (314)
T ss_pred HHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHcc
Confidence 4555555555555554332 34666556666699999887776553322 134556778899999999999999999
Q ss_pred hhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHH
Q 020068 100 EALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLN 179 (331)
Q Consensus 100 ~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a 179 (331)
.+++|+++|.++++|..+|+.+++.+..++|+|+++..+.++..+.+|.......|. .++..|+.|++.+
T Consensus 96 ~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~----------sf~~~gY~w~~~n 165 (314)
T KOG1444|consen 96 KSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL----------SFNLRGYSWALAN 165 (314)
T ss_pred ccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc----------eecchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887664 3677899999999
Q ss_pred HHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHh---hhCchHHHHHHHHHHHHHHH
Q 020068 180 LAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFC---KQHPEAAWDIFFYCLCGAVG 256 (331)
Q Consensus 180 ~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~ 256 (331)
.+..+...++.|+..+.. +.+.+++++|.++++.+.+....+ +.||+. ...+. ..++..+..+.+.|+++...
T Consensus 166 ~~~~a~~~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~--~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~i 241 (314)
T KOG1444|consen 166 CLTTAAFVVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSF--ITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGI 241 (314)
T ss_pred HHHHHHHHHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHH--HhcchH-HHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 999999999988877655 778999999999999999988776 778865 33332 12344555667778888888
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHhHHhh
Q 020068 257 QNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKLQRLQ 325 (331)
Q Consensus 257 ~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~~~~ 325 (331)
.++.+++.+..||+|.++++...+..+.+...+.+|+++++.+.+|+.+-+.|-..|++.++|+|+.++
T Consensus 242 sy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~~ 310 (314)
T KOG1444|consen 242 SYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQPP 310 (314)
T ss_pred HHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCCC
Confidence 899999999999999999997777777777777777899999999999999999999999988777654
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=4.8e-25 Score=201.24 Aligned_cols=267 Identities=14% Similarity=0.155 Sum_probs=209.0
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHhccC-----CCCCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHH
Q 020068 46 RFQHLAFLNLAQNVVCLIWSYIMLKLWSSS-----AGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIP 120 (331)
Q Consensus 46 ~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~ 120 (331)
+++.|.+-++..++.-.++-......++++ ..+.++++|+.+|++-+.++.+.+.|++|.+++..+++.++..++
T Consensus 39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~ 118 (334)
T PF06027_consen 39 GVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPF 118 (334)
T ss_pred CccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHH
Confidence 566787777777655444333333333221 235788999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCC
Q 020068 121 VMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKT 200 (331)
Q Consensus 121 v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~ 200 (331)
+++++++++|+|+++.+++++++.++|+.+....|....+ +..+.++...|++++++++.++|+.++.+|+..|+.
T Consensus 119 ~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~-~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~--- 194 (334)
T PF06027_consen 119 VMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGS-DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKA--- 194 (334)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccc-cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccC---
Confidence 9999999999999999999999999999999887754321 112345678999999999999999999999998765
Q ss_pred ChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 020068 201 SAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRK 280 (331)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~ 280 (331)
+..+.+....+++.++..+...+ .+.+ .++..+++++.+...+.++++-...+.+.-..++..||+..++....-+
T Consensus 195 ~~~~~lg~~Glfg~ii~~iq~~i-le~~---~i~~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd 270 (334)
T PF06027_consen 195 PRVEFLGMLGLFGFIISGIQLAI-LERS---GIESIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSD 270 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHh-eehh---hhhccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhh
Confidence 67888888899999888876542 2222 1222233444444444444444455556677899999999999888999
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Q 020068 281 FVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 281 v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~ 320 (331)
+.++++++++||+++++..++|.++++.|+.+|....++.
T Consensus 271 ~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 271 FYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 9999999999999999999999999999999998765443
No 13
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.9e-28 Score=207.96 Aligned_cols=312 Identities=13% Similarity=0.050 Sum_probs=260.5
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc-----CC
Q 020068 2 ENHGSGFRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSS-----SA 76 (331)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~-----~~ 76 (331)
|||....+++.|....+.....+.+...++++.++... ......|.++++.|++....++.......++ +.
T Consensus 17 ~e~~~l~~n~~~v~~~vs~ywv~SI~~vf~nk~llss~----~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftf 92 (347)
T KOG1442|consen 17 EEMPVLEANAKQVDSAVSLYWVTSIGLVFLNKHLLSSL----VVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTF 92 (347)
T ss_pred hhhHHHHHhhhchhhhccceeeeeehhhhhHHHHhhch----hhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceecc
Confidence 88999999999999988888888888888888887543 4677889999999999999888766443221 11
Q ss_pred -----CCCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhh
Q 020068 77 -----GGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSF 151 (331)
Q Consensus 77 -----~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~ 151 (331)
+-...++..|+++.+.++..++|.+|+|++++++.+-|+...+|+.+++++++|+|-+.....++++++.|..+-
T Consensus 93 p~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 93 PSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred CcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 223457899999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred ccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHH
Q 020068 152 ALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFE 231 (331)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 231 (331)
.-.|.. .+..++.|.++...|.++-|+..++.||..... +...+.+.+|+|..+.++++|..+ +.||+.+
T Consensus 173 vdqE~~-------~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v-~~~iw~lt~ynnv~a~lLflpll~--lnge~~~ 242 (347)
T KOG1442|consen 173 VDQEGS-------TGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV-GDCIWRLTAYNNVNALLLFLPLLI--LNGEFQA 242 (347)
T ss_pred cccccc-------cCccchhhhHHHHHHHHHHHHHHHhhheecccc-cCeehhhHHHHHHHHHHHHHHHHH--HcchHHH
Confidence 533322 246788999999999999999999998776544 556799999999999999999887 8899877
Q ss_pred HHHHhhh-CchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHH
Q 020068 232 AIQFCKQ-HPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGL 310 (331)
Q Consensus 232 ~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv 310 (331)
-+.+.+. ....|..+.+.+++++.-.+.-.+-+|.+||+|+.+.++.|-....++++.+++|.-+...|-|-.++++|-
T Consensus 243 v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs 322 (347)
T KOG1442|consen 243 VVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGS 322 (347)
T ss_pred HcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehh
Confidence 6655443 334555566667777766566677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHhhhh
Q 020068 311 SYQIYLKWRKLQRLQKK 327 (331)
Q Consensus 311 ~~~~~~k~~~~~~~~~~ 327 (331)
..|.+.|.++.+|+...
T Consensus 323 ~~YT~vk~~em~~~~~~ 339 (347)
T KOG1442|consen 323 LAYTLVKEHEMRKASAQ 339 (347)
T ss_pred HHHHHHHHHHHHhhccC
Confidence 99999988776654433
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=9.7e-24 Score=193.13 Aligned_cols=256 Identities=13% Similarity=0.111 Sum_probs=186.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH-hhhHHhHhhhcc-cchhHHHHHhhcchHHHHHHHHH
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNT-IGPAMGIEALKY-ISYPAQVLAKSSKMIPVMLMGTL 127 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sl~~-i~~~~~~~~ks~~pi~v~l~~~l 127 (331)
|..+++.|+.++++...... ++ ++.+++..+..++... ....+.+.+++| +|.+.+.++-++.|+++++++++
T Consensus 32 p~~~~~~R~~~a~~~l~~~~--~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~ 106 (299)
T PRK11453 32 PLMLAGLRFMLVAFPAIFFV--AR---PKVPLNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAF 106 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cC---CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHH
Confidence 89999999988765544332 22 2334455555555433 344566788887 78888898999999999999999
Q ss_pred hhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHH
Q 020068 128 VYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIML 207 (331)
Q Consensus 128 ~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~ 207 (331)
++|||+++++++++++.++|+.+...++.++ .+.+..|+++.+.+.++++.+.+.+||..++++.........
T Consensus 107 ~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~-------~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~ 179 (299)
T PRK11453 107 TFGERLQGKQLAGIALAIFGVLVLIEDSLNG-------QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVV 179 (299)
T ss_pred HhcCcCcHHHHHHHHHHHHhHHHhccccCCC-------cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHH
Confidence 9999999999999999999999887543211 123457999999999999999999998765442222223334
Q ss_pred HHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 020068 208 GMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCG-AVGQNFIFLTISRFGSLTNTTITTTRKFVSIVV 286 (331)
Q Consensus 208 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~sa~t~si~~~l~~v~till 286 (331)
+....+.+...+... ..+++..........++..|..+++.++.+ .+++.++++.+++.++.+.++...++|+++.++
T Consensus 180 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~ 258 (299)
T PRK11453 180 WSALIPIIPFFVASL-ILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLAS 258 (299)
T ss_pred HHHHHHHHHHHHHHH-HhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 444443332222211 022221111111223445677777887654 578889999999999999999999999999999
Q ss_pred HHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 287 SSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 287 s~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
|++++||++++.+++|.++++.|+++..+.++
T Consensus 259 ~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 259 AALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999998877665
No 15
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.93 E-value=2.4e-23 Score=190.12 Aligned_cols=254 Identities=13% Similarity=-0.001 Sum_probs=182.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhHHhHhhhcc----cchhHHHHHhhcchHHHHHHH
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNTIGPAMGIEALKY----ISYPAQVLAKSSKMIPVMLMG 125 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~----i~~~~~~~~ks~~pi~v~l~~ 125 (331)
|..+.+.|+..+.++..+.. .+++.++.+++..+..++.......+.+.+++| .+.....++.++.|+++++++
T Consensus 32 P~~~~~~R~~~a~l~l~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~ 109 (295)
T PRK11689 32 PVGGAAMIYSVSGLLLLLTV--GFPRLRQFPKRYLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFA 109 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHc--cccccccccHHHHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHH
Confidence 88999999999887776542 222222333343444444455666677777765 566677889999999999999
Q ss_pred HHhhccccCchhHHHHHHHhhhhhhhccccCCccccc-cCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhh
Q 020068 126 TLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTIS-KLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWD 204 (331)
Q Consensus 126 ~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~-~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~ 204 (331)
.+++|||++++++.++++.++|+.++..++...+..+ +.+.+++..|+++.++|++++|.++++.||..+++ ++..
T Consensus 110 ~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~---~~~~ 186 (295)
T PRK11689 110 VLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK---NGIT 186 (295)
T ss_pred HHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC---Cchh
Confidence 9999999999999999999999999876542111000 00112345699999999999999999999875444 4443
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 020068 205 IMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSI 284 (331)
Q Consensus 205 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~ti 284 (331)
.. . ..+.+...+... ..++. ....+++.|..+++.++.+.+++.++++++++.+|.++++..+++|++++
T Consensus 187 ~~--~-~~~~~~l~~~~~--~~~~~-----~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~ 256 (295)
T PRK11689 187 LF--F-ILTALALWIKYF--LSPQP-----AMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSA 256 (295)
T ss_pred HH--H-HHHHHHHHHHHH--HhcCc-----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHH
Confidence 32 1 222222222222 22221 11123445656666777777899999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 285 VVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 285 lls~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
+++++++||++|+.+++|.++++.|+.+..+.++
T Consensus 257 i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 257 ALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 9999999999999999999999999988765443
No 16
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.93 E-value=6.1e-23 Score=187.24 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=206.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC-CCCchHHHHHH
Q 020068 9 RRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSA-GGAPWWTYWSA 87 (331)
Q Consensus 9 ~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 87 (331)
+|-+.++++.......+....+..+.... +. .|..+++.|+.++.++..++...+++++ ++++++.....
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~--------~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~ 74 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGVE--------SW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALI 74 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc--------cC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 33445555555555555555555543321 22 3889999999999888776655443322 23344555566
Q ss_pred HHHH-HhhhHHhHhhh-cccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCC
Q 020068 88 GITN-TIGPAMGIEAL-KYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLA 165 (331)
Q Consensus 88 ~~~~-~~~~~~~~~sl-~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~ 165 (331)
|... .....+.+.+. ++++.+...++.++.|+++++++.+ +|||++++++.++++.++|+.+...++.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~--------- 144 (292)
T PRK11272 75 GLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN--------- 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc---------
Confidence 6654 35667778888 9999999999999999999999975 6999999999999999999998864321
Q ss_pred CCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHH
Q 020068 166 HPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWD 245 (331)
Q Consensus 166 ~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (331)
.+.+..|+++.+++.+++|.+.+..||..++ ++.....+...++.+...+... ..++... ...++..|..
T Consensus 145 ~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~ 214 (292)
T PRK11272 145 LSGNPWGAILILIASASWAFGSVWSSRLPLP----VGMMAGAAEMLAAGVVLLIASL--LSGERLT----ALPTLSGFLA 214 (292)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHHHHHH--HcCCccc----ccCCHHHHHH
Confidence 1244679999999999999999998875321 2344556666777776666543 2222110 1113345666
Q ss_pred HHHHHHH-HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 246 IFFYCLC-GAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 246 i~~~~~~-~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
+.+.++. +.+++.++++++++.++.+.++...++|+++.++|++++||++|+.+++|.++++.|+.+.++.++
T Consensus 215 i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 215 LGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777765 458889999999999999999999999999999999999999999999999999999998776544
No 17
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.92 E-value=1.4e-22 Score=185.17 Aligned_cols=280 Identities=8% Similarity=-0.016 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC----CCCchHH--H
Q 020068 11 VLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSA----GGAPWWT--Y 84 (331)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~----~~~~~~~--~ 84 (331)
..+..+..+.....+....+..+... +.+ |..+++.|+.++.++...+...+++.+ +.+++++ .
T Consensus 6 ~~~g~~~~l~a~~~wg~~~~~~k~~~---------~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (296)
T PRK15430 6 TRQGVLLALAAYFIWGIAPAYFKLIY---------YVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFM 75 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhc---------CCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHH
Confidence 34555555555555555555554431 233 789999999998876655443332211 0112233 2
Q ss_pred HHH-HHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcccccc
Q 020068 85 WSA-GITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISK 163 (331)
Q Consensus 85 ~~~-~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~ 163 (331)
..+ +........+.+++++++|++...++.++.|+++++++++++|||++++++.++++.++|+.+....+.
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~------- 148 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG------- 148 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------
Confidence 223 344556788999999999999999999999999999999999999999999999999999998864221
Q ss_pred CCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchH-
Q 020068 164 LAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEA- 242 (331)
Q Consensus 164 ~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (331)
+.. .+.+++.+++|.+.+.+||..++. ..+......+..+++.+...+. ..... . ....++..
T Consensus 149 ---~~~----~~~l~aa~~~a~~~i~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~---~~~~~~~~~ 212 (296)
T PRK15430 149 ---SLP----IIALGLAFSFAFYGLVRKKIAVEA-QTGMLIETMWLLPVAAIYLFAI----ADSST-S---HMGQNPMSL 212 (296)
T ss_pred ---Ccc----HHHHHHHHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHH----ccCCc-c---cccCCcHHH
Confidence 111 356678899999998887653211 1122222333333333332211 11110 0 01112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHhH
Q 020068 243 AWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~ 322 (331)
+..+...++.+.+++.++++++++.+|.++++..+++|++++++|++++||++|+.+++|+++++.|+.+.........|
T Consensus 213 ~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~~~~~ 292 (296)
T PRK15430 213 NLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAIYTQR 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22334455567799999999999999999999999999999999999999999999999999999998887776655544
Q ss_pred H
Q 020068 323 R 323 (331)
Q Consensus 323 ~ 323 (331)
|
T Consensus 293 ~ 293 (296)
T PRK15430 293 R 293 (296)
T ss_pred h
Confidence 3
No 18
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=8.8e-23 Score=182.93 Aligned_cols=243 Identities=12% Similarity=0.030 Sum_probs=190.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH-HHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHH
Q 020068 47 FQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGIT-NTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMG 125 (331)
Q Consensus 47 f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~ 125 (331)
...|..+.+.|++.+.+...+....+ +++.+++.++..+.. ......+.+.|++|++.+...++.++.|+++++++
T Consensus 15 ~~~~~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~ 91 (260)
T TIGR00950 15 QVPLYFAVFRRLIFALLLLLPLLRRR---PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLS 91 (260)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc---cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHH
Confidence 34577888888888777665543322 334455556666654 56778889999999999999999999999999999
Q ss_pred HHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhH
Q 020068 126 TLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDI 205 (331)
Q Consensus 126 ~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~ 205 (331)
.+++|||++++++.++++.++|+.+...+++ .+.+..|+.+.+++.++++.+.+..|+..+++ +.++...
T Consensus 92 ~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~---------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~-~~~~~~~ 161 (260)
T TIGR00950 92 DLMGKERPRKLVLLAAVLGLAGAVLLLSDGN---------LSINPAGLLLGLGSGISFALGTVLYKRLVKKE-GPELLQF 161 (260)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHhhccCCc---------ccccHHHHHHHHHHHHHHHHHHHHHhHHhhcC-CchHHHH
Confidence 9999999999999999999999999865432 13457899999999999999999999887655 3334444
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHH-HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 020068 206 MLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLC-GAVGQNFIFLTISRFGSLTNTTITTTRKFVSI 284 (331)
Q Consensus 206 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~i~~~sa~t~si~~~l~~v~ti 284 (331)
..+.+.++.+...+... ..++.. ..++..+..+++.+++ +.+++.++++++++.++.++++..+++|+++.
T Consensus 162 ~~~~~~~~~~~l~~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ 233 (260)
T TIGR00950 162 TGWVLLLGALLLLPFAW--FLGPNP------QALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVAL 233 (260)
T ss_pred HHHHHHHHHHHHHHHHH--hcCCCC------CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44567777777777654 333211 1123344456666665 45888999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhHhHHHHHH
Q 020068 285 VVSSVLSGNPLSSKQWGCVLMVFSGL 310 (331)
Q Consensus 285 lls~~~f~e~~t~~~~~G~~lv~~Gv 310 (331)
+++++++||++++.+++|+++++.|+
T Consensus 234 ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 234 LLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999986
No 19
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.92 E-value=2.1e-22 Score=183.76 Aligned_cols=271 Identities=10% Similarity=-0.014 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhh
Q 020068 15 AFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNTIG 94 (331)
Q Consensus 15 ~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (331)
+...+.-..++...+...+.... +++ |..+.+.|++++.++..++...++++.+++.++..+..|+.....
T Consensus 14 ~~~~~la~~~~~~~~~~~K~~~~--------~~~-~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 14 ILLLLIAMASIQSGASLAKSLFP--------LVG-APGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH--------HcC-HHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHH
Confidence 33333334444455555555542 333 678999999999888776543333233344556677788777777
Q ss_pred hHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHH
Q 020068 95 PAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYG 174 (331)
Q Consensus 95 ~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~ 174 (331)
..+.+.+++|+|.+.+.++.++.|+++++++ +||+++. ..+.+.++|+.+....+.+. ++.+..|++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~-------~~~~~~G~l 151 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDV-------SHVDLTGAA 151 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCc-------ccCChHHHH
Confidence 8888999999999999999999999998776 3665544 45667789998776432111 134567999
Q ss_pred HHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHH-
Q 020068 175 LCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCG- 253 (331)
Q Consensus 175 l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 253 (331)
+.+++.+++|.+.+..||..+++ ++... .+...++.+...++.. ..+. + ...++..+...++.++++
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~--~~~~--~----~~~~~~~~~~~l~lgv~~t 219 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGAEH---GPATV-AIGSLIAALIFVPIGA--LQAG--E----ALWHWSILPLGLAVAILST 219 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC---CchHH-HHHHHHHHHHHHHHHH--HccC--c----ccCCHHHHHHHHHHHHHHH
Confidence 99999999999999998876544 44444 4556666666666544 2211 0 011233344455677654
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
.+++.++++++++.+|.++++..+++|+++.++|++++||++++.+++|.+++++|+..+.+..+|
T Consensus 220 ~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 220 ALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 577789999999999999999999999999999999999999999999999999999998766544
No 20
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.90 E-value=8.3e-23 Score=170.44 Aligned_cols=292 Identities=15% Similarity=0.089 Sum_probs=225.8
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhHHhHhhh
Q 020068 23 SAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNTIGPAMGIEAL 102 (331)
Q Consensus 23 ~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl 102 (331)
.+||..+++...-+|-.. +..+|+....+.+.|.+.+.+...+....+-.+.|....|+|+|+++..+.....+..||
T Consensus 12 lsYc~sSIlmTltNKyVl--s~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsL 89 (309)
T COG5070 12 LSYCFSSILMTLTNKYVL--SNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSL 89 (309)
T ss_pred HHHHHHHHHHHHhhHhee--cCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccce
Confidence 567777777666555322 246777788999999998877665543333234446667889999999999999999999
Q ss_pred cccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHH
Q 020068 103 KYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAF 182 (331)
Q Consensus 103 ~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~ 182 (331)
+|+++|.++++|..+.|.+...+..++|+|.+-.+..+.++++..-....++|.+.... ....--.|++|+....+.
T Consensus 90 qyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~---~~~~lN~GY~Wm~~Ncls 166 (309)
T COG5070 90 QYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAF---KAQILNPGYLWMFTNCLS 166 (309)
T ss_pred eeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHH---HhcccCCceEEEehhhHh
Confidence 99999999999999999999999999999999999999999999999999887643211 011223589999888888
Q ss_pred hhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHH
Q 020068 183 DGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFL 262 (331)
Q Consensus 183 ~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 262 (331)
.+.+-...++..+ ..+....+.|+|.|+++.++...+.+ ...|..+.--.....++....+.+.++++..-.++.-|
T Consensus 167 saafVL~mrkri~-ltNf~d~dtmfYnNllslPiL~~~s~--~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saW 243 (309)
T COG5070 167 SAAFVLIMRKRIK-LTNFKDFDTMFYNNLLSLPILLSFSF--LFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAW 243 (309)
T ss_pred HHHHHHHHHHhhc-ccccchhhHHHHhhhHHHHHHHHHHH--HhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccce
Confidence 8766655444333 22455688999999999999988776 33332221111122345555677778888776778889
Q ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHhH
Q 020068 263 TISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 263 ~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~ 322 (331)
+++.+|+.|.++++.+.+....+.|.++||+|.+...+..+.+-+.+..+|.+.|.+|++
T Consensus 244 cvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 244 CVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred eEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999988888888888776544
No 21
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.85 E-value=1.6e-19 Score=163.86 Aligned_cols=210 Identities=11% Similarity=0.050 Sum_probs=153.0
Q ss_pred HHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCC
Q 020068 86 SAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLA 165 (331)
Q Consensus 86 ~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~ 165 (331)
..+........+.+.++++.|.+....+.++.|+++.+++++++|||++++++.++++++.|+.+...++..
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-------- 139 (281)
T TIGR03340 68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-------- 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc--------
Confidence 344456677888899999999999999999999999999999999999999999999999999988754321
Q ss_pred CCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHH-HHHhhh-cCCCChHHHHHHhhhCchHH
Q 020068 166 HPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYN-LFYMFG-WPHGSGFEAIQFCKQHPEAA 243 (331)
Q Consensus 166 ~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~ 243 (331)
..+..|+.+.+++.++++.+.+..|+..++. ++.....+...++.+.. .+.... ...++.. . ...+..+
T Consensus 140 -~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~ 210 (281)
T TIGR03340 140 -QHRRKAYAWALAAALGTAIYSLSDKAAALGV---PAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS----M-FPYARQI 210 (281)
T ss_pred -ccchhHHHHHHHHHHHHHHhhhhccccccch---hcccccHHHHHHHHHHHHHHHHHHHHHHhccc----h-hhhHHHH
Confidence 2345688889999999999998776653322 22111111222222222 222210 0111100 0 0111122
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHH
Q 020068 244 WDIFFY-CLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 244 ~~i~~~-~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
+...+. ++++.+++.++++++++.++.+.+...++.|++++++|++++||++|+.+++|.++++.|+.+
T Consensus 211 ~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 211 LPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 233334 456678999999999999999999999999999999999999999999999999999999874
No 22
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.82 E-value=4.7e-17 Score=147.43 Aligned_cols=247 Identities=16% Similarity=0.153 Sum_probs=178.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhc--cCCCCCchHH-HHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHH
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWS--SSAGGAPWWT-YWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGT 126 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~ 126 (331)
+....+.|.....+.........+ ..+.+.+++. .+..++.......+.+.++++++.+..+++.++.|+++.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~ 115 (292)
T COG0697 36 FLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAV 115 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 445556688777766332222221 1122223233 3344445667788889999999999999999999999999996
Q ss_pred -HhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhH
Q 020068 127 -LVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDI 205 (331)
Q Consensus 127 -l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~ 205 (331)
+++|||++++++.++++.+.|+.+...++..+. .. ...|..+.+.+.+++|++.+.+|+.. +. ++...
T Consensus 116 ~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~------~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~---~~~~~ 184 (292)
T COG0697 116 LLLLGERLSLLQILGILLALAGVLLILLGGGGGG------IL-SLLGLLLALAAALLWALYTALVKRLS-RL---GPVTL 184 (292)
T ss_pred HHHccCCCcHHHHHHHHHHHHhHHheecCCCcch------hH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC---ChHHH
Confidence 777999999999999999999999987664321 01 46899999999999999999998776 33 34444
Q ss_pred HH-HHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHHHHHH
Q 020068 206 ML-GMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGA-VGQNFIFLTISRFGSLTNTTITTTRKFVS 283 (331)
Q Consensus 206 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~i~~~sa~t~si~~~l~~v~t 283 (331)
.. +..........+... .+. + .......+......++.+. +++.+++..+++.++...++...++|+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~----~~~----~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 255 (292)
T COG0697 185 ALLLQLLLALLLLLLFFL----SGF----G-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFA 255 (292)
T ss_pred HHHHHHHHHHHHHHHHHh----ccc----c-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 43 222211111111111 100 0 1112234555666776655 79999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 020068 284 IVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 284 ills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
++++++++||+++..+++|+++++.|+.+....
T Consensus 256 ~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 256 ALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999987766
No 23
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.81 E-value=2.9e-18 Score=151.42 Aligned_cols=221 Identities=19% Similarity=0.212 Sum_probs=172.7
Q ss_pred chHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcc
Q 020068 80 PWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSK 159 (331)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~ 159 (331)
...++.+.+++|...+.+.+.+++++|.+++++++.++++++.+++.+++|||.+++||.++++.++|+.+...++....
T Consensus 16 ~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~ 95 (244)
T PF04142_consen 16 DTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS 95 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999887654432
Q ss_pred ccccC-------CCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCC-hHH
Q 020068 160 TISKL-------AHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGS-GFE 231 (331)
Q Consensus 160 ~~~~~-------~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~ 231 (331)
+.++. .+.....|+++++++.+++|+.+++.||++|+. +.+.+........++.++.++... +..++ ..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~-~~~~~~~~~ 173 (244)
T PF04142_consen 96 DNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALL-LSDGSAISE 173 (244)
T ss_pred ccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHh-ccccccccc
Confidence 11110 123456899999999999999999999999987 677788778888888888877653 12111 111
Q ss_pred HHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHH
Q 020068 232 AIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMV 306 (331)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv 306 (331)
.--|...++..| ..-+..+++-+..-..+|+.|...-..+..+..+++.++|+++||.++|....+|..+|
T Consensus 174 ~g~f~G~~~~~~----~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 174 SGFFHGYSWWVW----IVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred CCchhhcchHHH----HHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 100111122222 22234445556777789999999999999999999999999999999999999998764
No 24
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.77 E-value=3.5e-16 Score=140.06 Aligned_cols=238 Identities=10% Similarity=0.001 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccC------CC---CCc-hHHHHHH
Q 020068 18 VAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSS------AG---GAP-WWTYWSA 87 (331)
Q Consensus 18 ~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~------~~---~~~-~~~~~~~ 87 (331)
.......+...++..+.+ . +. .|..+++.|+++++++..++...++++ .+ +.+ +......
T Consensus 7 ~i~a~~~wg~~~~~~k~~-~--------~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 7 SLLASFLFGYMYYYSKLL-K--------PL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred HHHHHHHHHHHHHHHHHh-c--------cC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 333334455556666542 1 22 378999999999887765544332211 01 111 1124455
Q ss_pred HHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCC
Q 020068 88 GITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHP 167 (331)
Q Consensus 88 ~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~ 167 (331)
++....+..+.+.|+++++.+.++++.++.|+++++++.+++|||++++++.++++.++|+.+...++. +
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~----------~ 146 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG----------S 146 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC----------C
Confidence 666777888999999999999999999999999999999999999999999999999999998764221 1
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCc-hHHHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHP-EAAWDI 246 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i 246 (331)
.. .+.+++.+++|.+.+..||..+ . +..+.... +....+...+... ..+.. . ....++ ..|..+
T Consensus 147 ~~----~~~l~aa~~~a~~~i~~~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~--~~~~~-~---~~~~~~~~~~~~l 211 (256)
T TIGR00688 147 LP----WEALVLAFSFTAYGLIRKALKN-T---DLAGFCLE-TLSLMPVAIYYLL--QTDFA-T---VQQTNPFPIWLLL 211 (256)
T ss_pred ch----HHHHHHHHHHHHHHHHHhhcCC-C---CcchHHHH-HHHHHHHHHHHHH--HhccC-c---ccccCchhHHHHH
Confidence 11 3467789999999988877532 2 22232221 2222222222211 11110 0 001122 245566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh
Q 020068 247 FFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVL 290 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~ 290 (331)
+..++++.+++.+++.++++.+|.+.++..+++|+++++++.++
T Consensus 212 ~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 212 VLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 67777777999999999999999999999999999999999764
No 25
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.74 E-value=3.3e-15 Score=134.34 Aligned_cols=231 Identities=15% Similarity=0.168 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcccc
Q 020068 82 WTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTI 161 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~ 161 (331)
.+..+.++.|...+-+.+.++.++|.+++++....+...+.++..++++||.+++||.++++.+.|+.+.-.+..+...+
T Consensus 93 lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a 172 (345)
T KOG2234|consen 93 LKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGA 172 (345)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc
Confidence 34666777888888899999999999999999999999999999999999999999999999999999987433322211
Q ss_pred c-cCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHH--HHHhhh
Q 020068 162 S-KLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEA--IQFCKQ 238 (331)
Q Consensus 162 ~-~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~ 238 (331)
. +....+.+.|+..++.+.+.+|+.+++-||++|+. +.+.+-...-...++.+..+...+ .. |.... ..+.+.
T Consensus 173 ~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s-~~s~wi~NiqL~~~g~~f~~l~~~--~~-d~~~i~~~gff~G 248 (345)
T KOG2234|consen 173 KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGS-NVSLWIRNIQLYFFGILFNLLTIL--LQ-DGEAINEYGFFYG 248 (345)
T ss_pred cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHh--hc-cccccccCCcccc
Confidence 1 23346678999999999999999999999999876 666666666777777777766554 21 21111 011111
Q ss_pred Cc-hHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHH
Q 020068 239 HP-EAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLK 317 (331)
Q Consensus 239 ~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k 317 (331)
+. ..|..+ +...++-++.-..+|+.+...-.-+..+-.+++.+.|+.+||.++|..-.+|+.+|+.++..|...+
T Consensus 249 ~s~~vw~vV----l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 249 YSSIVWLVV----LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred ccHHHHHHH----HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 11 222222 2334444666778899898888888888999999999999999999999999999999999999655
Q ss_pred HHH
Q 020068 318 WRK 320 (331)
Q Consensus 318 ~~~ 320 (331)
.+.
T Consensus 325 ~~~ 327 (345)
T KOG2234|consen 325 ARD 327 (345)
T ss_pred ccc
Confidence 543
No 26
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.73 E-value=2.5e-17 Score=144.33 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=146.4
Q ss_pred cchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcc------------ccc-----cCCCC
Q 020068 105 ISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSK------------TIS-----KLAHP 167 (331)
Q Consensus 105 i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~------------~~~-----~~~~~ 167 (331)
+++|.++.+|+.+|+++++.+....+||++..|+++.+++..|+......|.+.. +.+ ....+
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 6789999999999999999999999999999999999999999997665543210 000 01123
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIF 247 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (331)
+.+.|..+.+.+..++++.++++|+.+|++ +.+.+.......+++.+....... ...++......+.+.+|.. .+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSVLL-WSDGTLISNFGFFIGYPTA---VW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHHHh-hcccchhhccCcccCCchH---HH
Confidence 457788889999999999999999987654 333333333333333332222111 0111211111111222332 23
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 248 FYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
...+++..++.+..+.+|+.|+.+.+++.++|++++.++|+++|||+++..+++|+.+++.|+++|
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 344566777788999999999999999999999999999999999999999999999999997654
No 27
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.71 E-value=2.9e-16 Score=129.32 Aligned_cols=142 Identities=15% Similarity=0.184 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHhhhchHHHHHHHhhC----CCCChhhHHHHHHHHHHHHHHHHhhhcCCCChH--HHHHHhhh-----Cc
Q 020068 172 GYGLCFLNLAFDGFTNATQDSITARY----PKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGF--EAIQFCKQ-----HP 240 (331)
Q Consensus 172 G~~l~l~a~~~~a~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~-----~~ 240 (331)
|+++++.|.++.|++++++|+.+++. .+.++.++++|+++.+.+..+|..+ ..++.. +....... ++
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~--~~e~~~~~~~~~~~~~~~~~~~~ 78 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAF--LLEGPQLSSFFSEIFGEELSSDP 78 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhHHHHhhhhhhcchH
Confidence 78899999999999999999998873 3789999999999999999999876 322221 11111111 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHH
Q 020068 241 EAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~ 315 (331)
..+..++..++.+.+.++..+.+++++||++.++++.+|++.++++|+++|||++|+.+++|+++.+.|+..|+|
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 445566667778888999999999999999999999999999999999999999999999999999999999864
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.71 E-value=4.7e-18 Score=145.82 Aligned_cols=259 Identities=15% Similarity=0.093 Sum_probs=192.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCC-CCCc-hHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHH
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSA-GGAP-WWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTL 127 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l 127 (331)
|..+.-.|+++-.++.++.....+... .+.+ .+.++.++++...+..+.++|++|++.+-++++-.++|+++.+++++
T Consensus 64 p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~ 143 (346)
T KOG4510|consen 64 PMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWA 143 (346)
T ss_pred hhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHH
Confidence 344555555555544444333322111 1122 23356788888888999999999999999999999999999999999
Q ss_pred hhccccCchhHHHHHHHhhhhhhhcccc-----CCccccccCCC-CCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCC
Q 020068 128 VYGIRYTLPEYICTLLVAGGVSSFALMK-----TSSKTISKLAH-PNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTS 201 (331)
Q Consensus 128 ~~~e~~~~~~~~~~~~i~~Gv~l~~~~~-----~~~~~~~~~~~-~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~ 201 (331)
++||+++..+.++..+...|++++..++ +.+. ++.+. +.+..|....+.+.+..|..++..+++-|+ .+
T Consensus 144 ~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g--~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~---~h 218 (346)
T KOG4510|consen 144 FLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEG--EDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKN---AH 218 (346)
T ss_pred HHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccc--cccccccccCCchHHHHHhHhhhhhHHHHHHHhhcc---cc
Confidence 9999999999999999999999987643 1111 11111 345678888888888888778887776553 45
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 020068 202 AWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKF 281 (331)
Q Consensus 202 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v 281 (331)
..-.+.|..+++.+..++... ..|++. ..+ ....|+...-+|+.++.+|++....+++--|...++..+..-+
T Consensus 219 ~~msvsyf~~i~lV~s~I~~~--~ig~~~----lP~-cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvv 291 (346)
T KOG4510|consen 219 AIMSVSYFSLITLVVSLIGCA--SIGAVQ----LPH-CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVV 291 (346)
T ss_pred EEEEehHHHHHHHHHHHHHHh--hcccee----cCc-cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHH
Confidence 666678889999888887664 334321 111 1223445566788999999999999988888889999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Q 020068 282 VSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 282 ~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~ 320 (331)
++.++-+++|||.+|++.|.|+++++.+..+....|.-+
T Consensus 292 fAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 292 FAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred HHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 999999999999999999999999999988776665443
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.70 E-value=4.3e-15 Score=128.48 Aligned_cols=289 Identities=12% Similarity=0.090 Sum_probs=204.5
Q ss_pred HHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccC--------------CCCCchH--HHHH
Q 020068 23 SAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSS--------------AGGAPWW--TYWS 86 (331)
Q Consensus 23 ~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~--------------~~~~~~~--~~~~ 86 (331)
.+-..+.+..|+-...+ .++..+|++|..-+..-|+.-.++...+...+.+. .++.|.+ .+++
T Consensus 13 vsGs~Ntl~aKwadsi~-~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~ 91 (372)
T KOG3912|consen 13 VSGSFNTLVAKWADSIQ-AEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLP 91 (372)
T ss_pred hhccHHHHHHHHHHhhh-hhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecC
Confidence 33344555555554322 11234599997777666665555554443332210 1122443 3567
Q ss_pred HHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCC
Q 020068 87 AGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAH 166 (331)
Q Consensus 87 ~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~ 166 (331)
.+++-..+..+.|.+|.+.+.+.++++|-.-.|||-+++.-+++++.+.+||+++..+.+|+++....|...+++.-...
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~ 171 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDY 171 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999998876532221111112
Q ss_pred CCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhh---cCCCC---------hHH---
Q 020068 167 PNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFG---WPHGS---------GFE--- 231 (331)
Q Consensus 167 ~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~---------~~~--- 231 (331)
+....|+++++.+-+.-|+..++.||..+++ +.+|.+..-|-..++.+++....+. .+.++ +.+
T Consensus 172 s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~ 250 (372)
T KOG3912|consen 172 SSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGD 250 (372)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHH
Confidence 3457899999999999999999999999998 8999999999998885554433321 12231 111
Q ss_pred HHHHhhhCchHHHHHHHHHHHH--HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHH
Q 020068 232 AIQFCKQHPEAAWDIFFYCLCG--AVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSG 309 (331)
Q Consensus 232 ~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~G 309 (331)
.+...+..|.. .+...+... ++-+..-....|..||.|-.+.-.+|..+.-+++.....|.+...|+.|.++.+.|
T Consensus 251 ~~~~~~e~p~l--~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~G 328 (372)
T KOG3912|consen 251 AFAALQESPSL--AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMG 328 (372)
T ss_pred HHHHhcCCchh--HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222221 122222221 12233445678999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 020068 310 LSYQIY 315 (331)
Q Consensus 310 v~~~~~ 315 (331)
+.+|.-
T Consensus 329 i~lY~~ 334 (372)
T KOG3912|consen 329 IILYNQ 334 (372)
T ss_pred HHHHHH
Confidence 998863
No 30
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.68 E-value=2.9e-14 Score=129.76 Aligned_cols=212 Identities=13% Similarity=0.140 Sum_probs=154.8
Q ss_pred HHHHhhhHHhHhhhcccchhHHHHHhh-cchHHHHHHHHHhhccccCchh----HHHHHHHhhhhhhhccccCCcccccc
Q 020068 89 ITNTIGPAMGIEALKYISYPAQVLAKS-SKMIPVMLMGTLVYGIRYTLPE----YICTLLVAGGVSSFALMKTSSKTISK 163 (331)
Q Consensus 89 ~~~~~~~~~~~~sl~~i~~~~~~~~ks-~~pi~v~l~~~l~~~e~~~~~~----~~~~~~i~~Gv~l~~~~~~~~~~~~~ 163 (331)
+....++.+.+.|.++++++.+..+-+ ..++.+.+.+.+++||+.++++ +.+++++++|+++....++++.+++
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~- 145 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIK- 145 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccc-
Confidence 345677889999999999999977777 7788889999999999999999 9999999999999876543221100
Q ss_pred CCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHH
Q 020068 164 LAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAA 243 (331)
Q Consensus 164 ~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (331)
+..+...|+++.++|.++++.+....|+. +.+|.+..+....--.+....... ...+ .+. . .++..
T Consensus 146 -~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~--~~~~-~~~--~---~~~~~ 211 (290)
T TIGR00776 146 -SEFNFKKGILLLLMSTIGYLVYVVVAKAF-----GVDGLSVLLPQAIGMVIGGIIFNL--GHIL-AKP--L---KKYAI 211 (290)
T ss_pred -cccchhhHHHHHHHHHHHHHHHHHHHHHc-----CCCcceehhHHHHHHHHHHHHHHH--HHhc-ccc--h---HHHHH
Confidence 00223679999999999999998887753 236666643333311111111111 1100 000 0 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhh----hhHhHHHHHHHHHHH
Q 020068 244 WDIFFYCLCGAVGQNFIFLTIS-RFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQW----GCVLMVFSGLSYQIY 315 (331)
Q Consensus 244 ~~i~~~~~~~~~~~~~~~~~i~-~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~----~G~~lv~~Gv~~~~~ 315 (331)
+.....++...+++.+++...+ +.++.++++..+.+|+.+.++|++++||+.++.|+ +|.++++.|+.+...
T Consensus 212 ~~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 212 LLNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 2233366666788888889999 99999999999999999999999999999999999 999999999887654
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.66 E-value=2.7e-14 Score=122.09 Aligned_cols=246 Identities=11% Similarity=0.055 Sum_probs=188.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhh
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVY 129 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~ 129 (331)
|.-++..|...++++.....+-|+++..+.+++..+..|.+...++.++|.|++.+|.++++.+-.+-|+.+.+++
T Consensus 40 ~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~---- 115 (292)
T COG5006 40 AAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS---- 115 (292)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----
Confidence 5688999999998888776666666666778888899999999999999999999999999999999998876654
Q ss_pred ccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHH
Q 020068 130 GIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGM 209 (331)
Q Consensus 130 ~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~ 209 (331)
.|| .++.+.+.+.+.|+.+..-...+. ++.|..|..+.+.+..||+.|.+..+|.-+. .+..+-+-.-
T Consensus 116 sRr--~~d~vwvaLAvlGi~lL~p~~~~~-------~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~---~~g~~g~a~g 183 (292)
T COG5006 116 SRR--LRDFVWVALAVLGIWLLLPLGQSV-------WSLDPVGVALALGAGACWALYIVLGQRAGRA---EHGTAGVAVG 183 (292)
T ss_pred ccc--hhhHHHHHHHHHHHHhheeccCCc-------CcCCHHHHHHHHHHhHHHHHHHHHcchhccc---CCCchHHHHH
Confidence 343 456677778888888776433221 3578899999999999999999998887642 2334444555
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 020068 210 NLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGA-VGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSS 288 (331)
Q Consensus 210 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~ 288 (331)
..++.++.+|+-. ...+ ....+|.....-+..++++. +-+.+.-.++++.++.+.++...++|.++.+.++
T Consensus 184 m~vAaviv~Pig~--~~ag------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~ 255 (292)
T COG5006 184 MLVAALIVLPIGA--AQAG------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGL 255 (292)
T ss_pred HHHHHHHHhhhhh--hhcc------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHH
Confidence 6667777766543 1111 11234555555556666654 6667788899999999999999999999999999
Q ss_pred HhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 289 VLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 289 ~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
+++||.+|+.||.|++.++.+..-.++.-+|
T Consensus 256 i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 256 IFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 9999999999999999999987765554443
No 32
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.65 E-value=4.8e-13 Score=117.32 Aligned_cols=251 Identities=14% Similarity=0.050 Sum_probs=170.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCC-----CCCchH--HHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHH
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSA-----GGAPWW--TYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVM 122 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~ 122 (331)
+..+..-|.+.+..+....+...|+.+ .++|.+ .....+..-..+-+...+|...=.+-.+.+-....|++.+
T Consensus 34 ~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~V 113 (293)
T COG2962 34 ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNV 113 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHH
Confidence 456777787777777666554443321 123322 1222232333333455567776444455667778899999
Q ss_pred HHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCCh
Q 020068 123 LMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSA 202 (331)
Q Consensus 123 l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~ 202 (331)
+++.+++|||.++-|++++++..+||..-.+... +..+..+.+++ .+++|....|++ +.++
T Consensus 114 llG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g----------~lpwval~la~----sf~~Ygl~RK~~-----~v~a 174 (293)
T COG2962 114 LLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG----------SLPWVALALAL----SFGLYGLLRKKL-----KVDA 174 (293)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC----------CCcHHHHHHHH----HHHHHHHHHHhc-----CCch
Confidence 9999999999999999999999999998887543 45666665544 466666555433 3444
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 020068 203 WDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCK-QHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKF 281 (331)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v 281 (331)
.+-+.-=.++-.+..+.+.+ +...+.. +.. +++..+..+...|..+++.-.++..+-++.+-.+.++..+++|.
T Consensus 175 ~~g~~lE~l~l~p~al~yl~-~l~~~~~----~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Pt 249 (293)
T COG2962 175 LTGLTLETLLLLPVALIYLL-FLADSGQ----FLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPT 249 (293)
T ss_pred HHhHHHHHHHHhHHHHHHHH-HHhcCch----hhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44332222233333333332 1111111 222 34555556667777888888888889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHhHHh
Q 020068 282 VSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKLQRL 324 (331)
Q Consensus 282 ~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~~~ 324 (331)
...+++++++||+++..++...+++-.|+.++.+..-++++|+
T Consensus 250 l~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~~ 292 (293)
T COG2962 250 LMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYTARKK 292 (293)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999887766654
No 33
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.60 E-value=2.6e-15 Score=134.97 Aligned_cols=224 Identities=12% Similarity=0.058 Sum_probs=174.1
Q ss_pred HHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCC
Q 020068 89 ITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPN 168 (331)
Q Consensus 89 ~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~ 168 (331)
..-+..+.++|.||.|.+++..+++-+++-.|+..++.++..||+++.+.+++++.+.|+++.+++|..+. ++..+..
T Consensus 167 ~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~--~~~~a~~ 244 (416)
T KOG2765|consen 167 PLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN--SDLPASR 244 (416)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc--ccCCccc
Confidence 34556889999999999999999999999999999999999999999999999999999999999875432 1222345
Q ss_pred CchhHHHHHHHHHHhhhchHHHHHHHhhC-CCCChhhHHHHHHHHHHHHHHHHhhhc-CCCChHHHHHHhhhCchHHHHH
Q 020068 169 APLGYGLCFLNLAFDGFTNATQDSITARY-PKTSAWDIMLGMNLWGTIYNLFYMFGW-PHGSGFEAIQFCKQHPEAAWDI 246 (331)
Q Consensus 169 ~~~G~~l~l~a~~~~a~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i 246 (331)
...|.++.+++++.+|.|.+..||-..++ .+.+.....-|..++..+++.|..+++ ..+ .|.++.. ...+ ...+
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~--~e~F~lP-~~~q-~~~v 320 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG--EERFELP-SSTQ-FSLV 320 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc--cCcccCC-CCce-eEee
Confidence 68999999999999999999888766555 245555556677777777777655421 011 1111111 1111 1233
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 247 FFYCL-CGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 247 ~~~~~-~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
+..++ ...++-++|-.+.-.++|+++.+..++....+++...++-|+++|+.+++|.+.|++|-...++..+
T Consensus 321 v~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 321 VFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 44444 4457889999999999999999999999999999999999999999999999999999887666543
No 34
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.45 E-value=1.1e-14 Score=124.48 Aligned_cols=254 Identities=11% Similarity=0.080 Sum_probs=186.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHH
Q 020068 47 FQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGT 126 (331)
Q Consensus 47 f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~ 126 (331)
.+.|..-+|.....-+++=..+..++ ++.-+..|+.|+.+++.-+-++.+-..|.||.+....+++.+-..+.++++++
T Consensus 45 iN~Pt~QtFl~Y~LLalVY~~~~~fR-~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw 123 (336)
T KOG2766|consen 45 INAPTSQTFLNYVLLALVYGPIMLFR-RKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSW 123 (336)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHhh-hHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHH
Confidence 33465666666544443333334343 23334568889999988888888888999999999889999988888999999
Q ss_pred HhhccccCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHH
Q 020068 127 LVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIM 206 (331)
Q Consensus 127 l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~ 206 (331)
+++|.||.+.++.++++...|+.+....|-... +...+.+...|+.+.++.+-++|..++.+|.+.|+ .+..|+|
T Consensus 124 ~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag--d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn---~d~~elm 198 (336)
T KOG2766|consen 124 FFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG--DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKN---ADRVELM 198 (336)
T ss_pred HHHHHHHhhheeeeEEeEecceEEEEEeeeccc--cccCCCCCccCcEEEEecceeeeeccccHHHHHhc---CcHHHHH
Confidence 999999999999999999999999888764321 11224567889999999999999999999988874 4789999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 020068 207 LGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVV 286 (331)
Q Consensus 207 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~till 286 (331)
-...++++++..+-.+ .+..-. ...+++...... +..+++-++-+.+.-..+|..||...++.....+..++++
T Consensus 199 ~~lgLfGaIIsaIQ~i--~~~~~~---~tl~w~~~i~~y-l~f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i 272 (336)
T KOG2766|consen 199 GFLGLFGAIISAIQFI--FERHHV---STLHWDSAIFLY-LRFALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI 272 (336)
T ss_pred HHHHHHHHHHHHHHHh--hhccce---eeEeehHHHHHH-HHHHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH
Confidence 9999999999876533 211100 111112111111 1122232333344556788999988888888889999988
Q ss_pred HHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 287 SSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 287 s~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
-.||-+++|+..+..+.+..|.++|.
T Consensus 273 --~~FgYhv~wLY~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 273 --RTFGYHVDWLYFLAFATIATGLIIYS 298 (336)
T ss_pred --HHHhcchhhhhHHHHHHHHHhhEEee
Confidence 77888899999999999999999984
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.06 E-value=1.8e-09 Score=85.02 Aligned_cols=123 Identities=13% Similarity=0.116 Sum_probs=96.2
Q ss_pred HhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHH-HHHHHHHH
Q 020068 182 FDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLC-GAVGQNFI 260 (331)
Q Consensus 182 ~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~ 260 (331)
++|.+.+..|+..++ .++.+..++....+.+ .++... ...... ....++..+......++. +.+++.++
T Consensus 2 ~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLL--ILGRKP----FKNLSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred eeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHH--hhcccc----ccCCChhhhhhhhHhhccceehHHHHH
Confidence 577888888888764 4899999999999987 554443 211110 112233444455566655 57888999
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 261 FLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 261 ~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
++++++.++...++...++|+++.++++++++|++++.+++|+++++.|+.+..
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988753
No 36
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.97 E-value=2.6e-09 Score=82.36 Aligned_cols=133 Identities=14% Similarity=0.129 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHH
Q 020068 173 YGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLC 252 (331)
Q Consensus 173 ~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (331)
.++.++|++++++..++.|-=.+ +.||.-.++--+....+......+ ..|+.... ...++..|..+.+.++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~---~vdp~~At~IRtiVi~~~l~~v~~--~~g~~~~~---~~~~~k~~lflilSGla 76 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE---GVDPDFATTIRTIVILIFLLIVLL--VTGNWQAG---GEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---ccCccHHHHHHHHHHHHHHHHHHH--hcCceecc---cccCcceehhhhHHHHH
Confidence 46788999999999888864433 457766666667766666665555 55653321 11356677778888888
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 253 GAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 253 ~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
+..+-+++|++++.-.+....+..-..+++++++|++++||++|..+|+|+.++..|+.+.
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailv 137 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILV 137 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeE
Confidence 8899999999999999999999999999999999999999999999999999999997653
No 37
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.92 E-value=1.2e-08 Score=79.59 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhccC------CCCCchHHHHHHHHHHH-hhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHh
Q 020068 56 AQNVVCLIWSYIMLKLWSSS------AGGAPWWTYWSAGITNT-IGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLV 128 (331)
Q Consensus 56 ~q~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~ 128 (331)
+|++.+.++...+...+++. .+++++......++... .+..+.+.|+++.+ +....+.++.|+++++++.++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 46666666665554443321 12345555555566654 77889999999999 577799999999999999999
Q ss_pred hccccCchhHHHHHHHhhhhhhhccccCC
Q 020068 129 YGIRYTLPEYICTLLVAGGVSSFALMKTS 157 (331)
Q Consensus 129 ~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~ 157 (331)
+|||++++++.+++++.+|+++..++|.+
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999987653
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.89 E-value=3.9e-07 Score=80.79 Aligned_cols=211 Identities=15% Similarity=0.163 Sum_probs=142.4
Q ss_pred HHHHHHHHHhhhHHhHhhhcccchhHHHHH-hhcchHHHHHHHHHhhccccCchhHH----HHHHHhhhhhhhccccCCc
Q 020068 84 YWSAGITNTIGPAMGIEALKYISYPAQVLA-KSSKMIPVMLMGTLVYGIRYTLPEYI----CTLLVAGGVSSFALMKTSS 158 (331)
Q Consensus 84 ~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~-ks~~pi~v~l~~~l~~~e~~~~~~~~----~~~~i~~Gv~l~~~~~~~~ 158 (331)
-+..|++...+....+.|.+++.+|...=+ -....+.+.+++.++++|..+..++. +++++++|+.+.+..|.++
T Consensus 48 ~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~ 127 (269)
T PF06800_consen 48 AFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKS 127 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccc
Confidence 345566777888999999998544322211 12335667889999999999988766 8889999999999877654
Q ss_pred cccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhh
Q 020068 159 KTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQ 238 (331)
Q Consensus 159 ~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 238 (331)
++. .+..+...|++.++++.+.+..|....+ . . +.++++..+=...-..+..+.+.. ...+ .+ .
T Consensus 128 ~~~--~~~~~~~kgi~~Ll~stigy~~Y~~~~~-~---~-~~~~~~~~lPqaiGm~i~a~i~~~--~~~~-----~~--~ 191 (269)
T PF06800_consen 128 DKS--SSKSNMKKGILALLISTIGYWIYSVIPK-A---F-HVSGWSAFLPQAIGMLIGAFIFNL--FSKK-----PF--F 191 (269)
T ss_pred ccc--ccccchhhHHHHHHHHHHHHHHHHHHHH-h---c-CCChhHhHHHHHHHHHHHHHHHhh--cccc-----cc--c
Confidence 311 1123445799999999999888877754 2 2 567877765443333333333322 1111 01 1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchh----hhhHhHHHHHHH
Q 020068 239 HPEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQ----WGCVLMVFSGLS 311 (331)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~----~~G~~lv~~Gv~ 311 (331)
+...|.. ..-++.=.+++++++...++.|..+.=..+-+..+++.+.+.++++|+=+..+ ++|.++++.|..
T Consensus 192 ~k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 192 EKKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred ccchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 1222222 23444445788888999999999999999999999999999999999877654 457777777754
No 39
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.87 E-value=9.9e-09 Score=80.78 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=89.3
Q ss_pred HHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccC----CCCCchHHHHHHHHH-HHhhhHHhHh
Q 020068 26 IYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSS----AGGAPWWTYWSAGIT-NTIGPAMGIE 100 (331)
Q Consensus 26 ~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~ 100 (331)
..+.++.+...+ ++ .|...++.|+..+.+ ........+++ .+...+......+.. ...+..+.+.
T Consensus 4 a~~~~~~k~~~~--------~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (126)
T PF00892_consen 4 AIYSVFSKKLLK--------KI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFY 73 (126)
T ss_pred eeHHHHHHHHhc--------cC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHH
Confidence 345556666653 23 377899999999887 44443333221 122333445556665 5778899999
Q ss_pred hhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 101 ALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 101 sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
++++++.+...++.++.|+++.+++++++||+++++++.+++++++|+.+..
T Consensus 74 a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 74 ALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999864
No 40
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.78 E-value=3.9e-07 Score=83.33 Aligned_cols=140 Identities=15% Similarity=0.156 Sum_probs=105.5
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIF 247 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (331)
....|.++.+++.++++......|.. . +.+|.++.++...++.+...+... ..++..+ .....+++..+....
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---~~~~~~~~~~R~~~a~~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~~~ 77 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---YVPADEILTHRVIWSFFFMVVLMS--ICRQWSY-LKTLIQTPQKIFMLA 77 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHHHHHHHHH--HHccHHH-HHHHHcCHHHHHHHH
Confidence 34679999999999999999888643 2 468999999999999887766553 2232211 111111232222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 248 FYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
..++.....+.++++++++.++..+++.....|+++.++++++++|+++..+|+|+++.+.|+.+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 78 VSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 2223344667889999999999999999999999999999999999999999999999999988754
No 41
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.78 E-value=3.2e-07 Score=82.04 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=104.6
Q ss_pred hhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhh-hCc-hHHHHHHH
Q 020068 171 LGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCK-QHP-EAAWDIFF 248 (331)
Q Consensus 171 ~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~i~~ 248 (331)
.|.++.+++.++++......|. .. +.+|.++.++-..++.+...+... ..++..+...... .+. +.+.....
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~---~~~~~~i~~~R~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LK---PLPATDILGHRMIWSFPFMLLSVT--LFRQWAALIERLKRIQKRPLILSLLL 75 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hc---cCCHHHHHHHHHHHHHHHHHHHHH--HHcchHHHHHHHhCcccchHHHHHHH
Confidence 4888999999999999998875 32 468999999999999888766543 2222111101111 111 11223444
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 249 YCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
.+++....+.+++++++++++.++++.....|+++.+++.++++|+++..++.|+++.+.|+.+-.
T Consensus 76 ~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 76 CGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 555556777889999999999999999999999999999999999999999999999999987653
No 42
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.56 E-value=2.1e-06 Score=80.39 Aligned_cols=136 Identities=11% Similarity=-0.016 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc-C-CCCC---chH--HHHH
Q 020068 14 LAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSS-S-AGGA---PWW--TYWS 86 (331)
Q Consensus 14 ~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~-~-~~~~---~~~--~~~~ 86 (331)
.....++--+++..+.++++...+ +++.+...++.+++++.+...+......+ + .... ... ..+.
T Consensus 190 G~~l~l~aa~~wa~~~il~~~~~~--------~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y 261 (358)
T PLN00411 190 GGALLTIQGIFVSVSFILQAHIMS--------EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVT 261 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHH
Confidence 344444445566677778877643 45445567777877766655443333211 1 1111 111 1222
Q ss_pred HHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCC
Q 020068 87 AGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTS 157 (331)
Q Consensus 87 ~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~ 157 (331)
.++....+..+.|+++++++.+...++....|++.+++++++++|++++.++++.++++.|+.+...++.+
T Consensus 262 ~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 262 MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKAN 332 (358)
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23333456678899999999999999999999999999999999999999999999999999998865443
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.54 E-value=1.1e-06 Score=79.70 Aligned_cols=133 Identities=10% Similarity=-0.004 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHH
Q 020068 173 YGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLC 252 (331)
Q Consensus 173 ~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (331)
+++.+.+++++|...+..||..++. ++ ..++....+.+...|+.. .... + .++...+.+.+...+..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~---~~--~~~~~~~~~~~~l~~~~~--~~~~--~-~~~~~~~~~~~~~~~~~~~~ 72 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE---PD--FLWWALLAHSVLLTPYGL--WYLA--Q-VGWSRLPATFWLLLAISAVA 72 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch---hH--HHHHHHHHHHHHHHHHHH--Hhcc--c-CCCCCcchhhHHHHHHHHHH
Confidence 4567889999999998887665432 23 346666666666666553 1100 0 00111112223333444445
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHH
Q 020068 253 GAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 253 ~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~ 315 (331)
....+.+.+.+.++.++...++..+..|+++.+++++++||++|..+|+|+++++.|+.+-..
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 73 NMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 567778889999999999999999999999999999999999999999999999999887553
No 44
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.47 E-value=2.3e-06 Score=66.21 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCC-----CCCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHH
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSA-----GGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLM 124 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~ 124 (331)
|.+-|++|.++..+++.......++.. +++.|--...-|+....+-.+++.+++-=++|.-.-+..++|+++.++
T Consensus 31 p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~ll 110 (140)
T COG2510 31 PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLL 110 (140)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHH
Confidence 678899999998888877766655321 233333333444455566778889999877777777888899999999
Q ss_pred HHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 125 GTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 125 ~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
+++++|||++.++|++++++++|+.+.+
T Consensus 111 s~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 111 SILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999998765
No 45
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.39 E-value=2.3e-06 Score=71.25 Aligned_cols=218 Identities=12% Similarity=0.009 Sum_probs=147.4
Q ss_pred HHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcccccc
Q 020068 84 YWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISK 163 (331)
Q Consensus 84 ~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~ 163 (331)
..|-+++..+.++.+..+|+.++.+.++.+.++.-.+|.+++++.+|+|+...++++.++...|+++.++.|...
T Consensus 56 taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~----- 130 (290)
T KOG4314|consen 56 TAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH----- 130 (290)
T ss_pred ecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh-----
Confidence 345566667788899999999999999999999999999999999999999999999999999999999877532
Q ss_pred CCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHH----HHhhhcCCCChHHHHHHhhhC
Q 020068 164 LAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNL----FYMFGWPHGSGFEAIQFCKQH 239 (331)
Q Consensus 164 ~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~ 239 (331)
...+.|+.+...|+.+.|+|-+.-|+...+ .+--+...+++..+..-.. |..+..+++ .|.++.....
T Consensus 131 ---a~e~iGi~~AV~SA~~aAlYKV~FK~~iGn---An~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~--VE~~qsFA~~ 202 (290)
T KOG4314|consen 131 ---ADEIIGIACAVGSAFMAALYKVLFKMFIGN---ANFGDAAHFMSCLGFFNLCFISFPALILAFTG--VEHLQSFAAA 202 (290)
T ss_pred ---hhhhhhHHHHHHHHHHHHHHHHHHHHHhcc---CcchhHHHHHHHHHHHHHHHHhhhHHHHHHhc--hHHHHHHhhC
Confidence 467899999999999999999888776542 2333444444444433222 111100122 1221111111
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 020068 240 PEAAWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
| |..+...+..+..-+..+...+..+.|...|+-.............+.-+-.++.....|..++..|-.+-..+
T Consensus 203 P--WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP 277 (290)
T KOG4314|consen 203 P--WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP 277 (290)
T ss_pred C--chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence 1 22232222222222344555667777777777666555555666665555588889999999999997765443
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.35 E-value=1.5e-05 Score=71.09 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 020068 12 LLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGG--APWWTYWSAGI 89 (331)
Q Consensus 12 ~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~ 89 (331)
.+..+..+.--.++..+.++.++..+. . + +.+...+..++..+.++..+.....+++... ..+...+..++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~-~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKK-E-----G-PELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGL 199 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhc-C-----C-chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 344444555556666677777666431 1 1 1123445567888777776654443322211 12222344454
Q ss_pred H-HHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhh
Q 020068 90 T-NTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGV 148 (331)
Q Consensus 90 ~-~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv 148 (331)
. ...+..+.+.++++++.+...++.++.|++.+++++++++|+++.+++.+..+++.|+
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 4 4567888999999999999999999999999999999999999999999999999986
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.35 E-value=5.8e-07 Score=81.99 Aligned_cols=224 Identities=14% Similarity=0.122 Sum_probs=121.6
Q ss_pred HHHHH-HHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCcccccc
Q 020068 85 WSAGI-TNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISK 163 (331)
Q Consensus 85 ~~~~~-~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~ 163 (331)
...|+ ....+..++..|+.+.|.+.-+-+-+...++..+++..++|||.+++++.++.+++.|..++....+++++...
T Consensus 53 W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t 132 (300)
T PF05653_consen 53 WWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHT 132 (300)
T ss_pred HHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCC
Confidence 34444 35567788899999999999988899999999999999999999999999999999999877654333221100
Q ss_pred C------CCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhh-cCCCChHHHHH--
Q 020068 164 L------AHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFG-WPHGSGFEAIQ-- 234 (331)
Q Consensus 164 ~------~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-- 234 (331)
. ..+..+..+........+ .+..... +++++ .+++.|....+.+...-.... -....+.+.+.
T Consensus 133 ~~~l~~~~~~~~fl~y~~~~~~~~~-~L~~~~~----~r~g~---~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~ 204 (300)
T PF05653_consen 133 LDELIALLSQPGFLVYFILVLVLIL-ILIFFIK----PRYGR---RNILVYISICSLIGSFTVLSAKAISILIKLTFSGD 204 (300)
T ss_pred HHHHHHHhcCcceehhHHHHHHHHH-HHHHhhc----chhcc---cceEEEEEEeccccchhhhHHHHHHHHHHHHhcCc
Confidence 0 001111122211111111 1111111 22211 112223333332222111100 00000000000
Q ss_pred HhhhCchHHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHhcCC--CCCchh----hhhHhHH
Q 020068 235 FCKQHPEAAWDIFFYCLCGAVGQ-NFIFLTISRFGSLTNTTITT-TRKFVSIVVSSVLSGN--PLSSKQ----WGCVLMV 306 (331)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~sa~t~si~~~-l~~v~tills~~~f~e--~~t~~~----~~G~~lv 306 (331)
....+|..|..+ ...+...+.| .+.+.+++++++....++.+ .-...+++-|.++|+| +.++.+ ..|..++
T Consensus 205 ~~f~~~~~y~l~-~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~i 283 (300)
T PF05653_consen 205 NQFTYPLTYLLL-LVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLII 283 (300)
T ss_pred hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 011234334222 2333445666 45677999999877555544 3456777888999997 455544 4466777
Q ss_pred HHHHHHHHHHH
Q 020068 307 FSGLSYQIYLK 317 (331)
Q Consensus 307 ~~Gv~~~~~~k 317 (331)
+.|+.+-+..|
T Consensus 284 i~GV~lL~~~~ 294 (300)
T PF05653_consen 284 IIGVFLLSSSK 294 (300)
T ss_pred HHhhheeeccC
Confidence 77777654433
No 48
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.35 E-value=1.4e-05 Score=62.18 Aligned_cols=105 Identities=15% Similarity=0.258 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q 020068 210 NLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGA-VGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSS 288 (331)
Q Consensus 210 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~ 288 (331)
..++.+..++... ..++..+.......++.. .....+.++. .++.+++++.++.++ ..++...+.|+++.++|.
T Consensus 5 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 5 YLFSVLFLLIILL--IRGRLRDLFRALRRKPWL--WLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHH--HHccHHHHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 3445555544443 344443333323333322 3344455554 777888999999995 777888999999999999
Q ss_pred HhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 289 VLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 289 ~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
++++|+++..++.|+++++.|+.+-.+.+-+
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999988776543
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.29 E-value=1.8e-05 Score=62.91 Aligned_cols=118 Identities=10% Similarity=0.003 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHH
Q 020068 171 LGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYC 250 (331)
Q Consensus 171 ~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (331)
.|+++++.+.++.+...+.-|+=.++.++.+. .. ... ... +...+|.. .++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~---~~-----~~~---~~~-------------~~~~~p~~---~i~lg 54 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSH---AW-----DFI---AAL-------------LAFGLALR---AVLLG 54 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccc---hh-----HHH---HHH-------------HHHhccHH---HHHHH
Confidence 47888999999888777776655554421111 00 000 000 00112211 23344
Q ss_pred H-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH--hcCCCCCchhhhhHhHHHHHHHHHHH
Q 020068 251 L-CGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSV--LSGNPLSSKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 251 ~-~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~--~f~e~~t~~~~~G~~lv~~Gv~~~~~ 315 (331)
+ +..+++.+|.+++++.+...+........+...+.++. +|||++|+.+++|+++++.|+.+.+.
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 4 44577889999999999999999998888888777875 89999999999999999999998654
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.21 E-value=3.6e-05 Score=70.25 Aligned_cols=133 Identities=11% Similarity=0.018 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCC----CchHHHHHHH
Q 020068 13 LLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGG----APWWTYWSAG 88 (331)
Q Consensus 13 ~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~ 88 (331)
...+...+--.++..+++.+++..+ . ++...+..|+..+.+...+........... ..+......+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 219 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPL--------P--VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLA 219 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--------C--cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHH
Confidence 3444444455666777777766532 1 134567788888777665544333221111 1222334445
Q ss_pred HH-HHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 89 IT-NTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 89 ~~-~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
+. ...+..+.+.++++++.+...++.+..|++.+++++++++|++++.++++.++++.|+.+....+
T Consensus 220 i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 220 VFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 43 44667889999999999999999999999999999999999999999999999999999886543
No 51
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.19 E-value=5.2e-05 Score=67.24 Aligned_cols=142 Identities=16% Similarity=0.136 Sum_probs=106.8
Q ss_pred CchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHH
Q 020068 169 APLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFF 248 (331)
Q Consensus 169 ~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (331)
...|+++.+.|-+.+|....+.+-+ + +.++.|+..+--.++.+....... ...+..+-.+ ..++|..+.....
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~---~~~~~eIlahRviwS~~~~l~ll~--~~r~~~~~~~-~~~~p~~~~~~~l 77 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E---PLPATEILAHRVIWSFPFMLALLF--LLRQWRELKQ-LLKQPKTLLMLAL 77 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c---cCCHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHH-HHhCcHHHHHHHH
Confidence 4579999999999999988887644 3 468899999999999888876655 3344333222 3445654433322
Q ss_pred HHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 249 YCLCGAVGQ-NFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 249 ~~~~~~~~~-~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
.+.. ...| ..+-++..+-....+|.=-.+.|.+.+++|.++++|+++..||+..++..+||....+...
T Consensus 78 ~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 78 TALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 2222 1234 3455788888899999999999999999999999999999999999999999998887643
No 52
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.11 E-value=8.4e-05 Score=60.74 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC--------CC-------CchH
Q 020068 18 VAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSA--------GG-------APWW 82 (331)
Q Consensus 18 ~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~--------~~-------~~~~ 82 (331)
...--.+.....+++|+..+... .++.+.+ |..+.......+++.+.+.....+... .+ ..+.
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 82 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVS-SNSKKLN-PLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIF 82 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccccCCC-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHH
Confidence 33444556666667777776421 1123433 556666666666666655433322111 00 1122
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
..+..++.....+...+..+++.+.-++.+....|.+.+.+++.++++|+++..++.++++.++|+.+..
T Consensus 83 ~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 83 LLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 2334455666778888999999999999999999999999999999999999999999999999998754
No 53
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.07 E-value=1.7e-05 Score=61.47 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=58.1
Q ss_pred HHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 90 TNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 90 ~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
++..+..+...+++.+|.+.+-.+-++.++.+++.+++++|||+++++++++.++++|+++..
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 466778888999999999999888889999999999999999999999999999999999875
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.02 E-value=0.00012 Score=68.49 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=97.3
Q ss_pred CchhHHHHHHHHHHhhhchHHHHHHHhhCCCCC-hhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHH
Q 020068 169 APLGYGLCFLNLAFDGFTNATQDSITARYPKTS-AWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIF 247 (331)
Q Consensus 169 ~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (331)
++.-..+.+.--.++.......|.+++.. + |..+..+...++.+...+... .+. .+..+. ......+..++
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~---~~P~~l~~~~~~~~~l~~~~~~~---~~~-~~~~~~-~~~~~~~~~ll 118 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNML---PLPWTISSLQLFVGWLFALLYWA---TGF-RKIPRI-KSLKLFLKNFL 118 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ChhHHHHHHHHHHHHHHHHHHHH---hCC-CCCCCC-CCHHHHHHHHH
Confidence 34334444444445556677888887654 4 888888888887665544322 110 000000 00112345667
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 248 FYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
..++++..++...+.+++.+++..++++....|+++++++.++++|+++..++.|+++++.|+.+..
T Consensus 119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 7888877777667789999999999999999999999999999999999999999999999988654
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.98 E-value=0.00017 Score=66.10 Aligned_cols=123 Identities=16% Similarity=0.225 Sum_probs=88.2
Q ss_pred HhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHH
Q 020068 182 FDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIF 261 (331)
Q Consensus 182 ~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 261 (331)
++.....++|..+++. ..|..+.+....++.+...+.. ..+.. + ....+.+.+..++..+++.+..+.+.+
T Consensus 13 ~~~~~~~~NK~~l~~~--~~P~~~~~~~~~~~~~~~~~~~---~~~~~-~---~~~~~~~~~~~~~~~g~~~~~~~~~~~ 83 (302)
T TIGR00817 13 LNVYFNIYNKKLLNVF--PYPYFKTLISLAVGSLYCLLSW---SSGLP-K---RLKISSALLKLLLPVAIVHTIGHVTSN 83 (302)
T ss_pred HHHHHHHHHHHHHhhC--ChhHHHHHHHHHHHHHHHHHHH---HhCCC-C---CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456777777643 4577777666666655543331 11110 0 001122345566777777777778899
Q ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 262 LTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 262 ~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
.+++++++...+++....|+++.+++.++++|+++..++.|.++.+.|+.+.
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999998754
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.97 E-value=0.00028 Score=64.58 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=89.5
Q ss_pred HHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHH
Q 020068 174 GLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCG 253 (331)
Q Consensus 174 ~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (331)
++.+++.++|+......|.... +.+|.+..++-..++.+..+++.. . .. .+ +......++..
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~---~~~p~~~~~~R~~~a~~~l~~~~~--~-~~----------~~--~~~~~~~g~~~ 68 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH---NMPPLMLAGLRFMLVAFPAIFFVA--R-PK----------VP--LNLLLGYGLTI 68 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHhc--C-CC----------Cc--hHHHHHHHHHH
Confidence 4577889999999988876654 568999999998887665544321 1 10 01 11233334433
Q ss_pred HHHH-HHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 254 AVGQ-NFIFLTISR-FGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 254 ~~~~-~~~~~~i~~-~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
..++ .+.+...++ .++..+++.....|+++.++++++++|+++..+++|+++.+.|+.+-.
T Consensus 69 ~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~ 131 (299)
T PRK11453 69 SFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLI 131 (299)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhc
Confidence 3333 355667776 477888989999999999999999999999999999999999987654
No 57
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.94 E-value=0.00042 Score=63.23 Aligned_cols=133 Identities=11% Similarity=-0.032 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCC--chHHHHHHHHH-
Q 020068 14 LAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGA--PWWTYWSAGIT- 90 (331)
Q Consensus 14 ~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~- 90 (331)
..+..++--.++..+.++.++..+ +. .|... ..+.+++.+...+............ .+...+.+++.
T Consensus 149 G~ll~l~aa~~~a~~~v~~r~~~~--------~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 149 GAALALGAGACWAIYILSGQRAGA--------EH-GPATV-AIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILS 218 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--------cC-CchHH-HHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHH
Confidence 334444444666677777766643 11 13344 3455555555444333322111111 11112344544
Q ss_pred HHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccC
Q 020068 91 NTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKT 156 (331)
Q Consensus 91 ~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~ 156 (331)
..++..+.+.++++++.+...++-+..|++..++++++++|+++..++++..++++|++.......
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~ 284 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIR 284 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence 456777889999999999999999999999999999999999999999999999999999876543
No 58
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.94 E-value=0.00026 Score=64.69 Aligned_cols=129 Identities=8% Similarity=0.027 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHH
Q 020068 171 LGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYC 250 (331)
Q Consensus 171 ~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (331)
.++++++.+.++|+......|...+ +.+|.....+-..++.++.+++. ..... ..++ +...+..+
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~---~~~P~~~~~~R~~~a~l~l~~~~---~~~~~-------~~~~--~~~~~~~~ 68 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE---SLGPVGGAAMIYSVSGLLLLLTV---GFPRL-------RQFP--KRYLLAGG 68 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc---cCChHHHHHHHHHHHHHHHHHHc---ccccc-------cccc--HHHHHHHh
Confidence 3567788899999988888876554 46899998888888877776542 11110 1111 11222222
Q ss_pred HHHHHHHHHHHHHH----HhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 251 LCGAVGQNFIFLTI----SRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 251 ~~~~~~~~~~~~~i----~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
+.......+.+..+ +..++..+++..++.|+++.++++++++|+++..+++|+++.+.|+.+-.
T Consensus 69 l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 69 LLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 22222233344444 45677888999999999999999999999999999999999999987654
No 59
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.92 E-value=0.00012 Score=67.07 Aligned_cols=129 Identities=8% Similarity=0.043 Sum_probs=95.5
Q ss_pred chHHHHHHHhhCCCC-ChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHH
Q 020068 186 TNATQDSITARYPKT-SAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLCGAVGQNFIFLTI 264 (331)
Q Consensus 186 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 264 (331)
+...||++.++..+. .+.-+++-......+...+... .... .......+...+..+++...+..+.+.++
T Consensus 15 ~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 15 YGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLS--LFKF-------PKSRKIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHH--hccc-------cCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899998765233 3666666666666666665443 2220 01111123344566777777778888999
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHhHH
Q 020068 265 SRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKLQR 323 (331)
Q Consensus 265 ~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~~ 323 (331)
++.+..+..+.-..+++.+++++.++++++.+..++.+.+++..|+.+....+.+.++.
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~ 144 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSS 144 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccc
Confidence 99999999999999999999999999999999999999999999999988776555443
No 60
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.88 E-value=0.00013 Score=56.49 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
..+.+++..++++.+...+.....+.++.+.++|+++|||++|+.+++|+++++.|+..-
T Consensus 48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i 107 (111)
T PRK15051 48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL 107 (111)
T ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 356677888999999999999889999999999999999999999999999999998764
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.72 E-value=0.029 Score=52.02 Aligned_cols=226 Identities=13% Similarity=0.061 Sum_probs=122.3
Q ss_pred HHHHHHHhhhHHhHhhhcccchhHHH-HHhhcchHHHHHHHHHhhcccc---C----chhHHHHHHHhhhhhhhcc----
Q 020068 86 SAGITNTIGPAMGIEALKYISYPAQV-LAKSSKMIPVMLMGTLVYGIRY---T----LPEYICTLLVAGGVSSFAL---- 153 (331)
Q Consensus 86 ~~~~~~~~~~~~~~~sl~~i~~~~~~-~~ks~~pi~v~l~~~l~~~e~~---~----~~~~~~~~~i~~Gv~l~~~---- 153 (331)
.-|++...+......+.+|+-++... +.--...+...++..++++|-. + ..-..+++++++|+++.+.
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34556667888899999997666443 2223445566677777887654 2 3467788999999999998
Q ss_pred ccCCccccccCCCCCCchhHHHHHHHHHHhhhch-------HHHHHHHhhCCCCChhhHHHHHHH---HHHHH-HHHHhh
Q 020068 154 MKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTN-------ATQDSITARYPKTSAWDIMLGMNL---WGTIY-NLFYMF 222 (331)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~-------~~~~~l~~~~~~~~~~~~~~~~~~---~~~i~-~~~~~~ 222 (331)
.|.++.. ++.++.+.-.|+++++++.+.++.++ ...+...+ . +.++.....-... ++... .++++.
T Consensus 158 k~~~~~~-~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~-g~~~~~~~lp~~~~~~~G~~~~n~~~~~ 234 (345)
T PRK13499 158 KERKMGI-KKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-L-GVDPLYAALPSYVVIMGGGAITNLGFCF 234 (345)
T ss_pred ccccccc-ccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-c-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332110 00122345689999999999998888 33332211 2 3444333222222 11111 111111
Q ss_pred hc-CCCC-hHHHHHHhhhCchHHHHHHHHHHHH---HHHHHHHHHHHHhhchHHHHH---HH-HHHHHHHHHHHHHhcCC
Q 020068 223 GW-PHGS-GFEAIQFCKQHPEAAWDIFFYCLCG---AVGQNFIFLTISRFGSLTNTT---IT-TTRKFVSIVVSSVLSGN 293 (331)
Q Consensus 223 ~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~i~~~sa~t~si---~~-~l~~v~tills~~~f~e 293 (331)
.. ..++ .....++....+..+...+...+.+ ++++.++...-++.|.....+ .. .+--+++.+.+. +++|
T Consensus 235 ~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE 313 (345)
T PRK13499 235 IRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKE 313 (345)
T ss_pred HHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhh
Confidence 00 0111 0000011000011122222222222 456666777777775544444 33 555588888888 4898
Q ss_pred CCC------chhhhhHhHHHHHHHHHHH
Q 020068 294 PLS------SKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 294 ~~t------~~~~~G~~lv~~Gv~~~~~ 315 (331)
.=+ ..-++|+++++.|..+...
T Consensus 314 ~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 314 WKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred ccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 655 5568899999999876544
No 62
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.64 E-value=0.0013 Score=51.36 Aligned_cols=73 Identities=11% Similarity=0.066 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhHH-HHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPAQ-VLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~~-~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
.....-+++..+..+...+++++|.+.+ .+......+.+.+.+.++++|+.++.+++++.++++|+...-..+
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3455556788889999999999999865 444567788899999999999999999999999999999886544
No 63
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.59 E-value=0.00086 Score=61.12 Aligned_cols=131 Identities=12% Similarity=0.028 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc--cCCCCCchHHHHHHHH
Q 020068 12 LLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWS--SSAGGAPWWTYWSAGI 89 (331)
Q Consensus 12 ~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~ 89 (331)
.+.++..+..=++|..+....+... + .|...++.|.....+.+..+....+ ++......+..+..|+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~---~--------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 219 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG---V--------DGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGL 219 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC---C--------CcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 4555555555567777777776541 2 1445555565532222222211111 1111112233344677
Q ss_pred HHHhhhHHhHhhhc-ccchhHHHHHhhcchHHHHHHHHHhhccccCchhH----HHHHHHhhhhhhhcc
Q 020068 90 TNTIGPAMGIEALK-YISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEY----ICTLLVAGGVSSFAL 153 (331)
Q Consensus 90 ~~~~~~~~~~~sl~-~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~----~~~~~i~~Gv~l~~~ 153 (331)
....+..+...+++ +++++.+.++-+..|+...+.+.+++||+.+++|+ ++.++++.|+.+...
T Consensus 220 ~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 220 MWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 76677788889999 99999999999999999999999999999999999 999999999998754
No 64
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.58 E-value=0.00079 Score=62.21 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 243 AWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
|+.-++++++-.-++++...+.++++.+...+......++++++|++++++++++.|++|++++++|+.+..+....
T Consensus 79 ~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 79 WWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 33344567888899999999999999999999999999999999999999999999999999999999887666543
No 65
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.58 E-value=0.00043 Score=55.05 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=60.1
Q ss_pred HHHHHH-HHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHH--hhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 84 YWSAGI-TNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTL--VYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l--~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
++..++ ++..+..+.+.+++.+|.+.+.-+-+..++.+++.++. +++|+.+++++++++++++|+.+...++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 444554 57788999999999999998887778777777777764 8999999999999999999999987543
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.55 E-value=0.0019 Score=59.80 Aligned_cols=140 Identities=15% Similarity=0.122 Sum_probs=90.0
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHH--HHHhh-hcCCCChHHHHHHhhhCchHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYN--LFYMF-GWPHGSGFEAIQFCKQHPEAAW 244 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 244 (331)
+...|+++++++.+|++..++-+|| .|+ -++|.. |. ..+.... .|+.. .+..+++.+. ..+.++..+.
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~----w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~--~~~~~~~~~~ 74 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKK----WSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAY--YSSFSGSTLL 74 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCC----CchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHH--HHhcCHHHHH
Confidence 4568999999999999999988876 332 355654 33 2222111 12111 0112222221 1123444554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHhcCCCC---C----chhhhhHhHHHHHHHHHHHH
Q 020068 245 DIFFYCLCGAVGQNFIFLTISRFGSLTNTTITT-TRKFVSIVVSSVLSGNPL---S----SKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 245 ~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~-l~~v~tills~~~f~e~~---t----~~~~~G~~lv~~Gv~~~~~~ 316 (331)
..++.+++=.+||+..+..+++.|.+....+++ +.-+.+.+++.+++||-- + ....+|+++++.|+.+..+-
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666789999999999999766555544 778889999999999632 3 34677999999999998873
No 67
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.43 E-value=0.004 Score=55.92 Aligned_cols=142 Identities=13% Similarity=-0.007 Sum_probs=93.3
Q ss_pred CchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHH
Q 020068 169 APLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFF 248 (331)
Q Consensus 169 ~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 248 (331)
...+....+.+.+.++......+..... ..+.....++...++.+...+... . .. . .........++..+.
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~---~~~~~~~~~~~~~~~ 75 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVES--LDPFLFAAALRFLIAALLLLPLLL--L-EP-R---GLRPALRPWLLLLLL 75 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCChHHHHHHHHHHHHHHHHHHHH--h-hc-c---cccccccchHHHHHH
Confidence 3456667777777887777666655432 234555555566655555322221 1 00 0 000111111223333
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH-HhcCCCCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 249 YCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSS-VLSGNPLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~-~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
-.+.....+.+++..++++++...++.....|+++.+++. ++++|+++..++.|..+.+.|+.+.......
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 76 ALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 3344456778889999999999999999999999999997 7779999999999999999999887665443
No 68
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.39 E-value=0.0042 Score=47.68 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhHHhHhhhcccchhHH-HHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhh
Q 020068 84 YWSAGITNTIGPAMGIEALKYISYPAQ-VLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSF 151 (331)
Q Consensus 84 ~~~~~~~~~~~~~~~~~sl~~i~~~~~-~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~ 151 (331)
.......+..+..+...++|.+|.+.+ .+--....+.+.+.+.+++||+.++.+++++.+++.|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 444455677788888899999999855 55555667788889999999999999999999999999875
No 69
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.38 E-value=0.0034 Score=47.92 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhhhHHhHhhhcccchhHH-HHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 82 WTYWSAGITNTIGPAMGIEALKYISYPAQ-VLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~sl~~i~~~~~-~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
...+..-.++..+..+...++|.+|.+.+ .+--..-.+.+.+.+.+++||+.++.+++++.++++|++..-
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 33444555677888888999999998855 555556777888999999999999999999999999999864
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.33 E-value=5.5e-05 Score=65.31 Aligned_cols=210 Identities=15% Similarity=0.127 Sum_probs=129.1
Q ss_pred HHHHHhhhHHhHhhhcccchhHHHHHh-hcchHHHHHHHHHhhccccCchhH----HHHHHHhhhhhhhccccCCccccc
Q 020068 88 GITNTIGPAMGIEALKYISYPAQVLAK-SSKMIPVMLMGTLVYGIRYTLPEY----ICTLLVAGGVSSFALMKTSSKTIS 162 (331)
Q Consensus 88 ~~~~~~~~~~~~~sl~~i~~~~~~~~k-s~~pi~v~l~~~l~~~e~~~~~~~----~~~~~i~~Gv~l~~~~~~~~~~~~ 162 (331)
|.....+....+.|.+++.+|-+.-+. .+..+-+-+++.+.++|..+..+. .+++++++|+.+.++.|.++..
T Consensus 66 G~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~-- 143 (288)
T COG4975 66 GAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE-- 143 (288)
T ss_pred hhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc--
Confidence 334456677788899986555432111 123445567888999999988764 5788899999998887654321
Q ss_pred cCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchH
Q 020068 163 KLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEA 242 (331)
Q Consensus 163 ~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (331)
+.+.++.-.|+..++.|.+.+-.|.+..+. . +.+.++..+-+..-..+..+.+.. ...|.. + +...
T Consensus 144 ~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~----f-~v~g~saiLPqAiGMv~~ali~~~--~~~~~~----~---~K~t 209 (288)
T COG4975 144 EENPSNLKKGIVILLISTLGYVGYVVLFQL----F-DVDGLSAILPQAIGMVIGALILGF--FKMEKR----F---NKYT 209 (288)
T ss_pred ccChHhhhhheeeeeeeccceeeeEeeecc----c-cccchhhhhHHHHHHHHHHHHHhh--cccccc----h---HHHH
Confidence 112334457888888888887777665532 2 344555544444333333333322 111110 1 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhh----hhHhHHHHHHHHHH
Q 020068 243 AWDIFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQW----GCVLMVFSGLSYQI 314 (331)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~----~G~~lv~~Gv~~~~ 314 (331)
| .-..-++.=..|+++++.+.++.|-.|.=-.+-+--+++.+-+.++++|+=|..++ +|+++++.|..+-.
T Consensus 210 ~-~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 210 W-LNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred H-HHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 2 12233344457888888888888877655556666788899999999999887664 57788888766543
No 71
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.33 E-value=0.0035 Score=47.52 Aligned_cols=72 Identities=19% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhhhHHhHhhhcccchhHH-HHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcc
Q 020068 82 WTYWSAGITNTIGPAMGIEALKYISYPAQ-VLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFAL 153 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~sl~~i~~~~~-~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~ 153 (331)
+..+..-+++..+..+.-.|+|.+|.+++ .+---.-.+.+.+.++++++|+.+..+++++.++++|+...-.
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 34555556777888888999999999855 5555566778889999999999999999999999999997643
No 72
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.32 E-value=0.0051 Score=47.39 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=57.7
Q ss_pred HHHHHHHHhhhHHhHhhhcccchhHHHHH-hhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccc
Q 020068 85 WSAGITNTIGPAMGIEALKYISYPAQVLA-KSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALM 154 (331)
Q Consensus 85 ~~~~~~~~~~~~~~~~sl~~i~~~~~~~~-ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~ 154 (331)
...-+++..+..+...+++.+|.+.+--. -....+.+.+.+.++++|+.++.+++++.++++|++..-..
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34455677888888899999999876544 34567788899999999999999999999999999998643
No 73
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.28 E-value=0.00067 Score=60.14 Aligned_cols=75 Identities=17% Similarity=0.285 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Q 020068 246 IFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 246 i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~ 320 (331)
...-+++-.+.+.+.|.++++.+|.+..+....|.++|.++++++++++++..||+++.+.+.|+.+........
T Consensus 20 ~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 20 LAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 334444555677889999999999999999999999999999999999999999999999999999877665544
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.19 E-value=0.013 Score=45.02 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLT-NTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t-~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
.+++++...++|+.+..+ .++-.-+.-+.+.+.|+++|||++|+.+++|+.+++.|+..-
T Consensus 46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 355566677788887555 677777888999999999999999999999999999998763
No 75
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.14 E-value=0.002 Score=50.33 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLT-NTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLK 317 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t-~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k 317 (331)
.++.++...++++.+... .++..-+.-+.+.++|+++|||++|+.+++|+.+++.|+..-....
T Consensus 41 ~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 41 SLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 356667777888877555 4555567788899999999999999999999999999998764433
No 76
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.02 E-value=0.0046 Score=47.64 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 020068 255 VGQNFIFLTISRFGSLT-NTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 255 ~~~~~~~~~i~~~sa~t-~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
.+.++...++++.+... .++-.-+.-+.+.+.|+++|||++|+.+++|+.+++.|+..-...
T Consensus 42 ~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44555667778877555 455566778899999999999999999999999999999886443
No 77
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.97 E-value=0.018 Score=51.48 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 020068 11 VLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAGIT 90 (331)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (331)
..|.+...+.--++|..|....+...- .|+...+-|.+...+.+.++....+++..++..++-+..|+.
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~~~~-----------~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~ 204 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKAFHV-----------SGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLI 204 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCC-----------ChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHH
Confidence 344455455455777888887755321 145666677666655555554433322223333445677888
Q ss_pred HHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHH
Q 020068 91 NTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYIC 140 (331)
Q Consensus 91 ~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~ 140 (331)
...++.+...|-+.+-++++-.+..+.++...+.+.+++||+-+++++..
T Consensus 205 w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~ 254 (269)
T PF06800_consen 205 WGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIY 254 (269)
T ss_pred HHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHH
Confidence 88999999999998888877777788888889999999999999887753
No 78
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.0028 Score=57.14 Aligned_cols=215 Identities=15% Similarity=0.128 Sum_probs=126.8
Q ss_pred HHH-HHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccCCccccccC-
Q 020068 87 AGI-TNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKTSSKTISKL- 164 (331)
Q Consensus 87 ~~~-~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~- 164 (331)
.|+ ....+-..++.|..|.|.+.-+-+-+.+.+...+++..+++|+.++...++++++++|-.++....+++.+.+..
T Consensus 69 ~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~ 148 (335)
T KOG2922|consen 69 AGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVE 148 (335)
T ss_pred HHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHH
Confidence 444 455778889999999999988888899999999999999999999999999999999999888765544321000
Q ss_pred -----CCCCCchhHHHH-HHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHH-hh
Q 020068 165 -----AHPNAPLGYGLC-FLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQF-CK 237 (331)
Q Consensus 165 -----~~~~~~~G~~l~-l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 237 (331)
..+..++.+... .+..+.-- .+ ..+++ ...+++.|....+.+..+-.+- .-.+..++.. .+
T Consensus 149 el~~~~~~~~Fliy~~~iil~~~il~---~~---~~p~~---g~tnilvyi~i~s~iGS~tV~s---vKalg~aiklt~~ 216 (335)
T KOG2922|consen 149 EVWELATEPGFLVYVIIIILIVLILI---FF---YAPRY---GQTNILVYIGICSLIGSLTVMS---VKALGIAIKLTFS 216 (335)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHh---ee---ecccc---cccceeehhhHhhhhcceeeee---HHHHHHHHHHHhc
Confidence 001111111111 11111100 01 11123 2345566777777665432211 0011111111 11
Q ss_pred -----hCchHHHHHHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHhcCC--CCCchhh----hhHh
Q 020068 238 -----QHPEAAWDIFFYCLCGAVGQ-NFIFLTISRFGSLTNTTITT-TRKFVSIVVSSVLSGN--PLSSKQW----GCVL 304 (331)
Q Consensus 238 -----~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~sa~t~si~~~-l~~v~tills~~~f~e--~~t~~~~----~G~~ 304 (331)
.+|..|...+... +...-| .....+++.+++...+++.+ .-..++++.|.++|+| ..+..+. .|..
T Consensus 217 g~~ql~~~~ty~~~l~~~-~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ 295 (335)
T KOG2922|consen 217 GNNQLFYPLTWIFLLVVA-TCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFV 295 (335)
T ss_pred CCcccccHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHH
Confidence 1333332222222 223444 34567889999888777766 4466788889999998 4555544 4667
Q ss_pred HHHHHHHHHH
Q 020068 305 MVFSGLSYQI 314 (331)
Q Consensus 305 lv~~Gv~~~~ 314 (331)
.++.|+.+-.
T Consensus 296 ti~~G~flL~ 305 (335)
T KOG2922|consen 296 TIFLGIFLLH 305 (335)
T ss_pred HhhheeeEee
Confidence 7777776653
No 79
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.91 E-value=0.039 Score=44.40 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHH
Q 020068 173 YGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLC 252 (331)
Q Consensus 173 ~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (331)
.++.+.+-++-++....+-++.++. + ||++..+.++..+.+......+ ..++. ........| | ....-+++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~-g-s~~~as~i~~~~G~i~~~i~~~--~~~~~--~~~~~~~~p--~-w~~lGG~l 73 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKAL-G-SPLVASFISFGVGFILLLIILL--ITGRP--SLASLSSVP--W-WAYLGGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-C-ccHHHHHHHHHHHHHHHHHHHH--Hhccc--ccchhccCC--h-HHhccHHH
Confidence 3455556666666666666666554 2 6899999999999988887765 33332 111111122 2 22335567
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHH-hc---CCCCCchhhhhHhHHHHHHH
Q 020068 253 GAVGQNFIFLTISRFGSLTNTTITTTRKFV-SIVVSSV-LS---GNPLSSKQWGCVLMVFSGLS 311 (331)
Q Consensus 253 ~~~~~~~~~~~i~~~sa~t~si~~~l~~v~-tills~~-~f---~e~~t~~~~~G~~lv~~Gv~ 311 (331)
+.+...+....+++.|+..+......-.+. +++++.+ +| ++++|+.+.+|+++++.|+.
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 776667778889999999877777665554 4444544 33 35899999999999999986
No 80
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.86 E-value=0.009 Score=45.60 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLT-NTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t-~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
..++++...++|+.+..+ .++-.-+..+.+.+.|+++|||++|+.+++|+.+++.|+..-
T Consensus 40 ~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 40 IVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 355566667778777544 677777888999999999999999999999999999998764
No 81
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.71 E-value=0.013 Score=44.51 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhchHH-HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHH
Q 020068 255 VGQNFIFLTISRFGSLT-NTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 255 ~~~~~~~~~i~~~sa~t-~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~ 315 (331)
.++.+.-.++|+.+-.+ .++-+-.-.+.+.+.|+++|||++|+.+++|+.+++.|+..-..
T Consensus 42 ~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 42 LSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 44445556777777544 67777788899999999999999999999999999999886543
No 82
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.61 E-value=0.019 Score=42.86 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHhhhHHhHhhhcccchhHH-HHHhhcchHHHHHHHHHhhccccCchhHHHHHHH
Q 020068 88 GITNTIGPAMGIEALKYISYPAQ-VLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLV 144 (331)
Q Consensus 88 ~~~~~~~~~~~~~sl~~i~~~~~-~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i 144 (331)
-.++..+..+...+++++|.+.+ .+......+.+.+.+.+++||+.+++|+.++.++
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33677888899999999999865 5566678888999999999999999999998764
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.51 E-value=0.022 Score=52.10 Aligned_cols=118 Identities=13% Similarity=0.168 Sum_probs=82.9
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIF 247 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (331)
+...|+.+.+.++++.+...++||+-..|.++ ++.. .++ +.... ..+|.+|..+.
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~---------------------~~~--~~~~~-l~~~~W~~G~~ 58 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLR---------------------AGS--GGRSY-LRRPLWWIGLL 58 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccc---------------------ccc--hhhHH-HhhHHHHHHHH
Confidence 46789999999999999999999987655422 1100 000 00001 11232222221
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 248 FYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
. -.+|+...+.++...++...++.+.+.-+++.+++..+++|+++...++|.++++.|...-.
T Consensus 59 ~----~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 L----MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred H----HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 1 12455566678888888889999999999999999999999999999999999999977643
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.00 E-value=0.027 Score=42.02 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhchHHH-HHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHH
Q 020068 254 AVGQNFIFLTISRFGSLTN-TTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMV 306 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t~-si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv 306 (331)
..+.+++..++++.+..++ ++..-+..+.+.+.|.++|||++|+.+++|+.++
T Consensus 40 ~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 40 GLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3555677788999887665 5556688899999999999999999999999875
No 85
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.88 E-value=0.099 Score=45.50 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=56.8
Q ss_pred HHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhh
Q 020068 86 SAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSS 150 (331)
Q Consensus 86 ~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l 150 (331)
...+.......+-...++|.+..+..+.-+++++++.+++.++++++++..++.+..+++.|+.+
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 34455666667788899999988999999999999999999999999999999999999998764
No 86
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.58 E-value=0.28 Score=45.14 Aligned_cols=64 Identities=16% Similarity=0.333 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 255 VGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 255 ~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
+-+-+.|.+.++.+|.|..+...+|...|-+++++++++.++..||...++.+.|+.+.++...
T Consensus 104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~ 167 (345)
T KOG2234|consen 104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSL 167 (345)
T ss_pred HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 4445789999999999999999999999999999999999999999999999999999884443
No 87
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.50 E-value=0.023 Score=43.75 Aligned_cols=69 Identities=17% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhHHHHH-hhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhh
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPAQVLA-KSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSF 151 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~-ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~ 151 (331)
+|..-=+.+-.++..++..+...|.|.+.-+ .++.-+++.+.++++.+|..+++.+.+++++++|+.+.
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 4554445677888888999998888766544 57888999999999988888999999999999999864
No 88
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.48 E-value=0.0056 Score=53.80 Aligned_cols=70 Identities=11% Similarity=0.177 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 020068 247 FFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
++=|+.|+.|-+..|++..+.+-..+++++...|++++++++++++|++|.....|..+.+.|+.+..+.
T Consensus 101 iLRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 101 ILRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred EeehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 4557778888888999999999999999999999999999999999999999999999999998875543
No 89
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.21 E-value=0.44 Score=38.64 Aligned_cols=138 Identities=18% Similarity=0.192 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHH
Q 020068 171 LGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYC 250 (331)
Q Consensus 171 ~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (331)
..++..+.|-++-.+....+.|+.+.. .+|.--.+..+..+++......+ . .+-.+........| || .+.-+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~--~spl~As~isf~vGt~~L~~l~l--~-~~~~~~~a~~~~~p--wW-~~~GG 76 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYL--GSPLLASLISFLVGTVLLLILLL--I-KQGHPGLAAVASAP--WW-AWIGG 76 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHHHHH--H-hcCCCchhhccCCc--hH-HHHcc
Confidence 445556666666666666666665543 36877778888888877776665 2 22111111112222 22 22223
Q ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHH-HHHHHHHHHHHhcC----CCCCchhhhhHhHHHHHHHHHHHH
Q 020068 251 LCGAVGQNFIFLTISRFGSLTNTTITTT-RKFVSIVVSSVLSG----NPLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 251 ~~~~~~~~~~~~~i~~~sa~t~si~~~l-~~v~tills~~~f~----e~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
.++.+--........+.|+.++...... .-+.+++++.+=+. .++|...+.|++++++|+.+....
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3333322334456677777765555444 34445555544333 579999999999999996654433
No 90
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.08 E-value=0.077 Score=48.66 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHH-HHHHHhccCCC----CCch----
Q 020068 11 VLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSY-IMLKLWSSSAG----GAPW---- 81 (331)
Q Consensus 11 ~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~-~~~~~~~~~~~----~~~~---- 81 (331)
++....+..+...+.....++.+.+.+.. +++.+ ++.+...+.-++++.+. +......+... ..++
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~----~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~ 235 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSK----GESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF 235 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcc----ccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh
Confidence 46677777888888899999999988532 12333 45666666666666665 44333221111 1121
Q ss_pred HHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccC
Q 020068 82 WTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKT 156 (331)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~ 156 (331)
......++++...+...+..+..++.-+++++-..|=+.+...++++++++.++.+.++.++.++|+++......
T Consensus 236 ~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~ 310 (316)
T KOG1441|consen 236 LILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 223344566667778888899999998999998888888999999999999999999999999999999876443
No 91
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=94.87 E-value=1 Score=39.68 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=52.6
Q ss_pred hHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcc
Q 020068 95 PAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFAL 153 (331)
Q Consensus 95 ~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~ 153 (331)
..+...+|+.+|-+++.++-|..|..-.+.++++++|+++..||+++..++.+..=.+.
T Consensus 224 YsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 224 YSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred hHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 45677899999999999999999999999999999999999999999999887774443
No 92
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.64 E-value=0.011 Score=51.45 Aligned_cols=135 Identities=12% Similarity=0.071 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHH
Q 020068 172 GYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCL 251 (331)
Q Consensus 172 G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (331)
+++.+++-++.|+.......| . +-.|.|...-+.+-+.+..+...+ ...++ .++..+..-+..+.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k----~-GG~p~qQ~lGtT~GALifaiiv~~-~~~p~---------~T~~~~iv~~isG~ 67 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANK----F-GGKPYQQTLGTTLGALIFAIIVFL-FVSPE---------LTLTIFIVGFISGA 67 (288)
T ss_pred hHHHHHHHHHHhcccceeeee----c-CCChhHhhhhccHHHHHHHHHHhe-eecCc---------cchhhHHHHHHhhh
Confidence 466777788888877765543 2 446777666666555555544332 11111 11222222222333
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHhcCCCCCchhh----hhHhHHHHHHHHHHHHHHHHh
Q 020068 252 CGAVGQNFIFLTISRFGSLTNTTITT-TRKFVSIVVSSVLSGNPLSSKQW----GCVLMVFSGLSYQIYLKWRKL 321 (331)
Q Consensus 252 ~~~~~~~~~~~~i~~~sa~t~si~~~-l~~v~tills~~~f~e~~t~~~~----~G~~lv~~Gv~~~~~~k~~~~ 321 (331)
.=.+||...|.+++..|.+.+.++++ ..-+-+.+++++.|||--++.+. +..++++.|+++.++.++.+|
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk 142 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNK 142 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccc
Confidence 33589999999999999999998887 55677889999999997776654 456788899998888776433
No 93
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=94.41 E-value=0.55 Score=37.73 Aligned_cols=101 Identities=16% Similarity=0.264 Sum_probs=69.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccC----CCCCchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHH-hhcchHHHHH
Q 020068 49 HLAFLNLAQNVVCLIWSYIMLKLWSSS----AGGAPWWTYWSAGITNTIGPAMGIEALKYISYPAQVLA-KSSKMIPVML 123 (331)
Q Consensus 49 ~p~~lt~~q~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~-ks~~pi~v~l 123 (331)
.|+.-+++-+..+.+.+.++....+++ .++.||+.|+ -|++.+....+...+...+.++..+.+ -....+.-++
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~l-GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~ 107 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYL-GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLL 107 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhc-cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 477888888888888887766555432 2345666555 566667777777888888776655433 3334444555
Q ss_pred HHHH----hhccccCchhHHHHHHHhhhhhh
Q 020068 124 MGTL----VYGIRYTLPEYICTLLVAGGVSS 150 (331)
Q Consensus 124 ~~~l----~~~e~~~~~~~~~~~~i~~Gv~l 150 (331)
++.+ .-+++.++++++++.++.+|+.+
T Consensus 108 iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 108 IDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5543 34688999999999999999864
No 94
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.27 E-value=0.087 Score=46.78 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHH
Q 020068 172 GYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCL 251 (331)
Q Consensus 172 G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (331)
|++.++.|.++.+...+=.| +++..++.-..++++.-..+......+ .. ..|...+...+-|.
T Consensus 1 G~~a~~va~~~fGs~~vPvK----~~~~gDg~~fQw~~~~~i~~~g~~v~~--~~-----------~~p~f~p~amlgG~ 63 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVK----KFDTGDGFFFQWVMCSGIFLVGLVVNL--IL-----------GFPPFYPWAMLGGA 63 (254)
T ss_pred CchhHHHHHHHhcccceeeE----eccCCCcHHHHHHHHHHHHHHHHHHHH--hc-----------CCCcceeHHHhhhh
Confidence 56677778777776554443 343345544444444444333333322 11 11222211112222
Q ss_pred HHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHH-hcCCC-----CCchhhhhHhHHHHHHHHHHHHHHHHhH
Q 020068 252 CGAVGQNFIFLTISRFG-SLTNTTITTTRKFVSIVVSSV-LSGNP-----LSSKQWGCVLMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 252 ~~~~~~~~~~~~i~~~s-a~t~si~~~l~~v~tills~~-~f~e~-----~t~~~~~G~~lv~~Gv~~~~~~k~~~~~ 322 (331)
.=+.|+.+..-.++..| ++-..+-++..-+..-..|-+ +||.+ -++++++|++++++|..++.+.|.+.++
T Consensus 64 lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~ 141 (254)
T PF07857_consen 64 LWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKE 141 (254)
T ss_pred hhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCC
Confidence 22334444444455555 222333344444444444433 56542 3578999999999999999888776644
No 95
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.23 E-value=2.6 Score=38.90 Aligned_cols=142 Identities=11% Similarity=0.092 Sum_probs=73.4
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhh-cCCCChHHHHHHhhhCc-hHHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFG-WPHGSGFEAIQFCKQHP-EAAWD 245 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~ 245 (331)
....|+++..++.++.+..++=.||. | .=++|......-+-..+..|.... ...+++.+- ....| +.+..
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k----~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i---~~~~~~~~l~~ 75 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-K----GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSI---YSATPASTLFW 75 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-C----CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---HHhCChhHHHH
Confidence 45689999999999988887766554 2 234665554444333344444331 123344332 22222 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHHHHHhcC-------CCCCchhhhhHhHHHHHHHHHHHHH
Q 020068 246 IFFYCLCGAVGQNFIFLTISRFG-SLTNTTITTTRKFVSIVVSSVLSG-------NPLSSKQWGCVLMVFSGLSYQIYLK 317 (331)
Q Consensus 246 i~~~~~~~~~~~~~~~~~i~~~s-a~t~si~~~l~~v~tills~~~f~-------e~~t~~~~~G~~lv~~Gv~~~~~~k 317 (331)
..++++.=-+|.+.+-..+++.| ++..+++.=+--++..++--++.| ++-...-++|+++++.|+.+..+-.
T Consensus 76 ~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 76 TFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 33444432334444445555555 222333333333333333333322 2333467889999999999876643
No 96
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.45 E-value=0.11 Score=40.18 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHH
Q 020068 253 GAVGQNFIFLTISRFGSLTNTTI-TTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 253 ~~~~~~~~~~~i~~~sa~t~si~-~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
+..|...+++.+++.+-+.+.++ +.+.=++|.+.++++.+|..+...++|+++++.|+.+
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 34556678888999887776666 5788899999998888888899999999999999753
No 97
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.02 E-value=2 Score=38.81 Aligned_cols=120 Identities=13% Similarity=0.172 Sum_probs=75.9
Q ss_pred HHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc--------CCCCCchHHHHHHHHHHHhhhHHh
Q 020068 27 YQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSS--------SAGGAPWWTYWSAGITNTIGPAMG 98 (331)
Q Consensus 27 ~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 98 (331)
.-+..|..+++. |+. . ++-+.+.--++.++.........+. ++++.-++|.+..+.+.+.+..+=
T Consensus 186 fTn~tQd~lf~~-~k~--s----~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI 258 (327)
T KOG1581|consen 186 FTNATQDSLFKK-YKV--S----SLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFI 258 (327)
T ss_pred hHHhHHHHHhcc-CCc--c----HhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhhee
Confidence 345568888873 321 1 2333333334444444444333221 234455789999999988876665
Q ss_pred HhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcc
Q 020068 99 IEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFAL 153 (331)
Q Consensus 99 ~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~ 153 (331)
+.-++---.-+.+++-.+.=++.++++.+.++.+.++.||.++.+.+.|+..=.+
T Consensus 259 ~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~ 313 (327)
T KOG1581|consen 259 FYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEIL 313 (327)
T ss_pred hhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHH
Confidence 5555532222333444455567888999999999999999999999999987654
No 98
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=90.79 E-value=0.15 Score=47.14 Aligned_cols=74 Identities=9% Similarity=0.188 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHH
Q 020068 247 FFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~ 320 (331)
+.+|..=+++++.+..+++.++....++.....-++++.++.++-+|++|+.+.++..+-++|+++.+..+.++
T Consensus 163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 33444445677788888899998889999999999999999999999999999999999999987766554433
No 99
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=89.36 E-value=0.85 Score=40.76 Aligned_cols=66 Identities=15% Similarity=0.286 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 249 YCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 249 ~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
-++|-..|....|..+..++|+..-+.--...+++-++|..+++++++..||.|+..+..|+....
T Consensus 92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 445666677778888888888888888888889999999999999999999999999999987643
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.47 E-value=0.63 Score=40.49 Aligned_cols=74 Identities=11% Similarity=0.209 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 79 APWWTYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
.-++++..++++.+.+.++-+.-..+-..-+-.++-.+.-.|+.+.+.++++...+.+||++..+++.|+..=.
T Consensus 239 ~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 239 YVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 34677888888888888877766665433333444555667899999999999999999999999999987644
No 101
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=87.03 E-value=3.2 Score=37.05 Aligned_cols=136 Identities=15% Similarity=0.131 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccCC------CCCchHHHH
Q 020068 12 LLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKLWSSSA------GGAPWWTYW 85 (331)
Q Consensus 12 ~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~~~~~~------~~~~~~~~~ 85 (331)
+..+..+.|...+=..-|=+||+.+|..++.+.+ ++++-..++.+..+......+.-. -..|++.|=
T Consensus 189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~E-------mvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyG 261 (367)
T KOG1582|consen 189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSE-------MVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYG 261 (367)
T ss_pred eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcce-------EEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHH
Confidence 4455666677777777888999999865543322 233333444444443333333211 134555432
Q ss_pred ---HHHHHHHhh--hHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccccC
Q 020068 86 ---SAGITNTIG--PAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMKT 156 (331)
Q Consensus 86 ---~~~~~~~~~--~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~~ 156 (331)
..+.....+ ..+....+- ...++.++-...-..+.+++++++.|+++..-.-+.++++.|+.+=.+++.
T Consensus 262 y~~~~s~~gylG~~~VLalI~~f--GA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 262 YAFLFSLAGYLGIVFVLALIKLF--GALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHh--chhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 222221111 222222221 222333333333446788999999999999999999999999999888764
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=86.12 E-value=0.94 Score=38.34 Aligned_cols=61 Identities=7% Similarity=0.185 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
+.+++.+..++++.+|+.++-...-.+.+..+++++++||++...+++..++.+.|+..-+
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmia 124 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIA 124 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEE
Confidence 3456788889999999999999999999999999999999999888888888888865543
No 103
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.88 E-value=24 Score=32.27 Aligned_cols=135 Identities=10% Similarity=-0.032 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHHHHHHHHH
Q 020068 173 YGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWDIFFYCLC 252 (331)
Q Consensus 173 ~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (331)
...++...+++.+..+..|....+|+-....-++.++++.+.+.....-. . .+.+.-.+....+.-|. -.++.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~---~-~lv~~~~l~~~~~kk~~---P~~~l 86 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKR---L-GLVNFRPLDLRTAKKWF---PVSLL 86 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH---h-ceeecCCcChHHHHHHc---cHHHH
Confidence 44444555555556667777777773233455566888877766654332 1 11110001111111221 11111
Q ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 253 GAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 253 ~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
-+...+.-...+++.+-....+...+.++.+.+...++||..++..-|.......+|...+.
T Consensus 87 f~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 87 FVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 11112233456788888888888889999999999999999999999999988888866543
No 104
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=79.00 E-value=19 Score=31.32 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
..++-|++.++...++-+.++-.+.+++.+.-+..-.|..+-+.++++++.++..+.++++.+...++.+...
T Consensus 226 am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak 298 (309)
T COG5070 226 AMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK 298 (309)
T ss_pred HHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888889999999999999999989999999999999999999999988888877777654
No 105
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.36 E-value=35 Score=27.76 Aligned_cols=102 Identities=20% Similarity=0.284 Sum_probs=57.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCC-----CCCchHHHHHHHHHHHhhhHHhHhhhcccchh-HHHHHhhcchHHHH
Q 020068 49 HLAFLNLAQNVVCLIWSYIMLKLWSSSA-----GGAPWWTYWSAGITNTIGPAMGIEALKYISYP-AQVLAKSSKMIPVM 122 (331)
Q Consensus 49 ~p~~lt~~q~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~sl~~i~~~-~~~~~ks~~pi~v~ 122 (331)
.|+.-.+.-+..+.+....+...+.+++ ++.||+.++. |++.+.....+......+-.. +..+.-+...+.-+
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~G-G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~gl 111 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIG-GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGL 111 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHc-cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHH
Confidence 5778888888887777766655533221 3457776642 222222222222233333322 33344444444555
Q ss_pred HHHHHh----hccccCchhHHHHHHHhhhhhhh
Q 020068 123 LMGTLV----YGIRYTLPEYICTLLVAGGVSSF 151 (331)
Q Consensus 123 l~~~l~----~~e~~~~~~~~~~~~i~~Gv~l~ 151 (331)
+++.+= -++++++.++.+++++.+|+.+.
T Consensus 112 liD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 112 LIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 554221 14889999999999999996554
No 106
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=76.89 E-value=0.78 Score=40.84 Aligned_cols=75 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred Hhhccc-cCchhHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhH
Q 020068 127 LVYGIR-YTLPEYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDI 205 (331)
Q Consensus 127 l~~~e~-~~~~~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~ 205 (331)
+++|+| .-+.-.+|++++++-+.+.+.-... .+.-+.|+++.++.....-..+.+.. +++++ +.+.+++
T Consensus 70 mlF~RrLLCPLGlLCiilimi~lLv~~L~tLt--------GQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~-GAs~Wti 139 (381)
T PF05297_consen 70 MLFKRRLLCPLGLLCIILIMIVLLVSMLWTLT--------GQTLFVGIVILFLCCLLALGVWFYMW-LLREL-GASFWTI 139 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhcCcchHHHHHHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh-hhHHHHH
Confidence 344444 4556667777776666655543221 23456788766555444433444533 66778 7788887
Q ss_pred HHHHHH
Q 020068 206 MLGMNL 211 (331)
Q Consensus 206 ~~~~~~ 211 (331)
+.+.-.
T Consensus 140 LaFcLA 145 (381)
T PF05297_consen 140 LAFCLA 145 (381)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 654433
No 107
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=76.71 E-value=3.6 Score=31.07 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhHHH-HHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhh
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPAQV-LAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSF 151 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~~~-~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~ 151 (331)
.|.+.-..+-.++.+++.-|+..|.+.++ +..+++-.++.+++..+..|-...+.+++..++++|+.+.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 45555556667778888888886665554 3345567788999988877778889999999999998865
No 108
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.63 E-value=2.2 Score=38.95 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=80.0
Q ss_pred CCCCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHhhhCchHHHH
Q 020068 166 HPNAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMFGWPHGSGFEAIQFCKQHPEAAWD 245 (331)
Q Consensus 166 ~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (331)
...+..|.++...+.++-+..-+.+|+-.+|- +.+. . -.++... ... .++..|..
T Consensus 16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~-~~~~-------------------~--ra~~gg~--~yl-~~~~Ww~G 70 (335)
T KOG2922|consen 16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRA-GASG-------------------L--RAGEGGY--GYL-KEPLWWAG 70 (335)
T ss_pred ccCceeeeeehhhccEEEeeehhhhHHHHHHH-hhhc-------------------c--cccCCCc--chh-hhHHHHHH
Confidence 34567899998888888777777777655543 1100 0 1122110 111 22333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHH
Q 020068 246 IFFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 246 i~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
++.++ +|....|.+..-..+.-.++.+.+.-+.+.+++..+++|.+++...+|++++++|-..-..+..
T Consensus 71 ~ltm~----vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 71 MLTMI----VGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHH----HHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 22222 4455555555666777788889999999999999999999999999999999999665444433
No 109
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=70.02 E-value=3.5 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.164 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHhhhhcCC
Q 020068 302 CVLMVFSGLSYQIYLKWRKLQRLQKKRKP 330 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~~~~~~~~~~ 330 (331)
-..+++.|+.++.+.++++++..+.++-|
T Consensus 18 ~~~~~Figiv~wa~~p~~k~~f~eaa~~p 46 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKKAFDEAANLP 46 (48)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHcCC
Confidence 35688999999999998888877777655
No 110
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=69.24 E-value=6.2 Score=30.79 Aligned_cols=21 Identities=14% Similarity=-0.089 Sum_probs=11.9
Q ss_pred CCCCCchhhhhHhHHHHHHHH
Q 020068 292 GNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 292 ~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
+++-+..+.+|.++.-.|+++
T Consensus 74 n~~~si~~~~G~vlLs~GLml 94 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGLML 94 (129)
T ss_pred cCCcchhhhehHHHHHHHHHH
Confidence 445555566666666566544
No 111
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=66.82 E-value=5.7 Score=25.54 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=19.6
Q ss_pred hHhHHHHHHHHHHHHHHHHhHHhhhhcCC
Q 020068 302 CVLMVFSGLSYQIYLKWRKLQRLQKKRKP 330 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~~~~~~~~~~ 330 (331)
-..++++|++++.+.++++++-.+.++-|
T Consensus 17 ~~~~~F~gi~~w~~~~~~k~~~e~aa~lp 45 (49)
T PF05545_consen 17 LFFVFFIGIVIWAYRPRNKKRFEEAANLP 45 (49)
T ss_pred HHHHHHHHHHHHHHcccchhhHHHHHccC
Confidence 34567788888888877766655555443
No 112
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.80 E-value=15 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 284 IVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 284 ills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
+.+|+++++||+.+-++.|.+++++|+++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 346999999999999999999999998763
No 113
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=66.77 E-value=2 Score=38.03 Aligned_cols=67 Identities=7% Similarity=0.036 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 247 FFYCLCGAVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 247 ~~~~~~~~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
+++++...=++++.-.+.++++-......-.-..+..+++||++++.+--+.++.|.+++++|+...
T Consensus 82 illa~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~Gvvmv 148 (336)
T KOG2766|consen 82 ILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMV 148 (336)
T ss_pred hheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEE
Confidence 3455555556666666777887777888888888888999999999999999999999999997653
No 114
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=66.12 E-value=47 Score=24.56 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=37.4
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHH---hcCC-CCCchhhhhHhHHHHHHHHHHHHHHHHhHHhhhhc
Q 020068 261 FLTISRFGSLTNTTITTTRKFVSIVVSSV---LSGN-PLSSKQWGCVLMVFSGLSYQIYLKWRKLQRLQKKR 328 (331)
Q Consensus 261 ~~~i~~~sa~t~si~~~l~~v~tills~~---~f~e-~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~~~~~~~ 328 (331)
-.+++++.-...-.+-.+.-++.++++.+ +.++ ++-..-|.|.+--+.+-.++....+|++|+.|.||
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e~~~ 93 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGEDDK 93 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCcCCC
Confidence 44667766333333333334455555444 3332 23334588887777777777666666666555443
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=65.29 E-value=6.2 Score=29.84 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.8
Q ss_pred HHHHHHhcCCCCCchhhhhHhHHHHHHHH
Q 020068 284 IVVSSVLSGNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 284 ills~~~f~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
...|+++++|++++.+..|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 34578899999999999999999888764
No 116
>PRK02237 hypothetical protein; Provisional
Probab=62.55 E-value=39 Score=25.74 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHH
Q 020068 271 TNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 271 t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~ 315 (331)
..+..+-+-.+.+++..+.+-|+++|...++|.++++.|+.+-.+
T Consensus 61 vYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 61 VYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 466677778899999999999999999999999999999876543
No 117
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=57.52 E-value=50 Score=25.12 Aligned_cols=45 Identities=9% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHH
Q 020068 271 TNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 271 t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~ 315 (331)
..+..+-+-.+.+++.++.+-|+++|...++|.++++.|+.+-.+
T Consensus 59 vYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 59 VYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 356667777899999999999999999999999999999876443
No 118
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=54.10 E-value=18 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=13.9
Q ss_pred CCCCchhhh--hHh----HHHHHHHHHHHHHHHHh
Q 020068 293 NPLSSKQWG--CVL----MVFSGLSYQIYLKWRKL 321 (331)
Q Consensus 293 e~~t~~~~~--G~~----lv~~Gv~~~~~~k~~~~ 321 (331)
+.+++.||. |++ +.+.+...+.+.|.|+.
T Consensus 26 d~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK~k~d 60 (68)
T PF04971_consen 26 DQFSPSQWAAIGVIGGIFFGLLTYLTNLYFKIKED 60 (68)
T ss_pred hccCcccchhHHHHHHHHHHHHHHHhHhhhhhhHh
Confidence 455555555 332 23334444555565543
No 119
>PRK02237 hypothetical protein; Provisional
Probab=52.00 E-value=28 Score=26.55 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=30.0
Q ss_pred HHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 121 VMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 121 v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
.++..+.+-|+|+++.++.+..++.+|+.++...+
T Consensus 73 Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 73 SLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 34567788899999999999999999999987654
No 120
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=50.74 E-value=1.8e+02 Score=25.88 Aligned_cols=97 Identities=16% Similarity=0.175 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH-HHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHh
Q 020068 50 LAFLNLAQNVVCLIWSYIMLKLWSSSAGGAPWWTYWSAG-ITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLV 128 (331)
Q Consensus 50 p~~lt~~q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~ 128 (331)
+++..++++....+.+++.....+ .+ +...+..+| ...+.++.+..-..+.+-.+....+=++ ..++.++..
T Consensus 27 g~~fQw~~~~~i~~~g~~v~~~~~-~p---~f~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s---~n~l~Gw~~ 99 (254)
T PF07857_consen 27 GFFFQWVMCSGIFLVGLVVNLILG-FP---PFYPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGS---VNCLTGWAS 99 (254)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcC-CC---cceeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHH---HHHHHHHHH
Confidence 567777777777777776655532 22 233344444 4566677777778888777777776665 244555543
Q ss_pred -----hcc-----ccCchhHHHHHHHhhhhhhhcc
Q 020068 129 -----YGI-----RYTLPEYICTLLVAGGVSSFAL 153 (331)
Q Consensus 129 -----~~e-----~~~~~~~~~~~~i~~Gv~l~~~ 153 (331)
++. +.++..+++++++++|..++..
T Consensus 100 grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~f 134 (254)
T PF07857_consen 100 GRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSF 134 (254)
T ss_pred hhceeccccccccchhHHHHHHHHHHHHHHHheee
Confidence 322 2346778889999999888876
No 121
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=48.25 E-value=12 Score=34.00 Aligned_cols=62 Identities=10% Similarity=0.057 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHh---cCCCCC--chhhhhHhHHHHHHHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLTNTTITTTRKFVSIVVSSVL---SGNPLS--SKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t~si~~~l~~v~tills~~~---f~e~~t--~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
.+++++.-+++...|-+.+-+++. =++++++..+ .+++.+ ..-+.|.+++++.+.+.....+
T Consensus 83 nlgNillq~aia~aGmSVafpvg~---glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~lga~ah~ 149 (336)
T PF07168_consen 83 NLGNILLQAAIAFAGMSVAFPVGI---GLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIILGAAAHK 149 (336)
T ss_pred hhHHHHHHHHHHHhcceeeeeeec---ceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHHHHHHHh
Confidence 467777666666666444333332 2233333332 244554 3456689999998888765433
No 122
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=47.59 E-value=37 Score=26.84 Aligned_cols=10 Identities=0% Similarity=0.165 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 020068 277 TTRKFVSIVV 286 (331)
Q Consensus 277 ~l~~v~till 286 (331)
++-|++.+++
T Consensus 75 Y~lPll~li~ 84 (135)
T PF04246_consen 75 YLLPLLALIA 84 (135)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 123
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=47.47 E-value=28 Score=26.47 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=30.3
Q ss_pred HHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 121 VMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 121 v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
.++-.+.+-|+|+++.++++..++.+|+.++...+
T Consensus 71 Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 71 SLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 45567788899999999999999999999988754
No 124
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=45.90 E-value=1.3e+02 Score=22.84 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhhccccCchhHHHHHHHhhhhhh
Q 020068 117 KMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSS 150 (331)
Q Consensus 117 ~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l 150 (331)
+......++.+++||++++....+.+++..++..
T Consensus 72 tL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 72 TLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred hhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 3344466788999999999999999999877654
No 125
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=44.54 E-value=78 Score=25.53 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=11.1
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHh
Q 020068 267 FGSLTNTTITTTRKFVSIVVSSVL 290 (331)
Q Consensus 267 ~sa~t~si~~~l~~v~tills~~~ 290 (331)
-|.+..+..-++-|.++++++.++
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555444444
No 126
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=42.76 E-value=37 Score=30.62 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhccccCchhHHHHHHHhhhhhhhccc
Q 020068 119 IPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALM 154 (331)
Q Consensus 119 i~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~ 154 (331)
...++++.+.++..+++..|++..+++.|..+++..
T Consensus 280 FvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~ 315 (330)
T KOG1583|consen 280 FVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANV 315 (330)
T ss_pred HHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 355778999999999999999999999999999754
No 127
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=40.13 E-value=34 Score=24.85 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCCchhhhhHhHHHHHHHHHHHHHHH
Q 020068 294 PLSSKQWGCVLMVFSGLSYQIYLKWR 319 (331)
Q Consensus 294 ~~t~~~~~G~~lv~~Gv~~~~~~k~~ 319 (331)
.+++...+|+.++++|+.+|..++.|
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 46788999999999999999765444
No 128
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=39.27 E-value=2.4e+02 Score=23.98 Aligned_cols=49 Identities=6% Similarity=-0.045 Sum_probs=29.9
Q ss_pred CchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHHHHhh
Q 020068 169 APLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNLFYMF 222 (331)
Q Consensus 169 ~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 222 (331)
.....+++..+.++-|......+- ++ ....|++.|.-.+.....+..++
T Consensus 28 ~v~s~l~Li~~f~~vA~l~~ll~a---~F--la~~qIiVYvGAI~VLflFvIMl 76 (198)
T PRK06638 28 PVHSALFLILTFLSIAGLYFLLGA---EF--LGVVQIIVYVGAVMVLFLFVVMM 76 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhch---HH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566555555555544433221 11 34688889999888888877776
No 129
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.01 E-value=53 Score=24.56 Aligned_cols=31 Identities=13% Similarity=0.044 Sum_probs=26.9
Q ss_pred HHHHHHhhccccCchhHHHHHHHhhhhhhhc
Q 020068 122 MLMGTLVYGIRYTLPEYICTLLVAGGVSSFA 152 (331)
Q Consensus 122 ~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~ 152 (331)
..++.+.+||+.++..+.+.+++..|+..+.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 4578899999999999999999999887654
No 130
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.51 E-value=25 Score=31.65 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=18.8
Q ss_pred CCchhhhhHhHHHHHHHHHHHHH
Q 020068 295 LSSKQWGCVLMVFSGLSYQIYLK 317 (331)
Q Consensus 295 ~t~~~~~G~~lv~~Gv~~~~~~k 317 (331)
+|..|+++..+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999987764443
No 131
>PF14981 FAM165: FAM165 family
Probab=35.23 E-value=59 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 020068 304 LMVFSGLSYQIYLKWRKL 321 (331)
Q Consensus 304 ~lv~~Gv~~~~~~k~~~~ 321 (331)
++.+.|+=.|...+-..+
T Consensus 21 ClaFAgvK~yQ~krlEak 38 (51)
T PF14981_consen 21 CLAFAGVKMYQRKRLEAK 38 (51)
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 566778888776654333
No 132
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.54 E-value=32 Score=30.89 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=19.1
Q ss_pred CCCchhhhhHhHHHHHHHHHHHH
Q 020068 294 PLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 294 ~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
.+|..|++++.+++.|+.+..+.
T Consensus 236 ~ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 236 GLTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999998776544
No 133
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.51 E-value=48 Score=25.40 Aligned_cols=12 Identities=8% Similarity=-0.042 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 020068 305 MVFSGLSYQIYL 316 (331)
Q Consensus 305 lv~~Gv~~~~~~ 316 (331)
+++.+++++...
T Consensus 11 v~i~~i~yF~~i 22 (109)
T PRK05886 11 LLIMGGFMYFAS 22 (109)
T ss_pred HHHHHHHHHHHc
Confidence 334444444333
No 134
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=33.33 E-value=31 Score=27.00 Aligned_cols=14 Identities=0% Similarity=-0.178 Sum_probs=8.5
Q ss_pred hhHhHHHHHHHHHH
Q 020068 301 GCVLMVFSGLSYQI 314 (331)
Q Consensus 301 ~G~~lv~~Gv~~~~ 314 (331)
.|..+...|..+..
T Consensus 90 ~GLmlL~~~alcW~ 103 (129)
T PF15099_consen 90 LGLMLLACSALCWK 103 (129)
T ss_pred HHHHHHHhhhheeh
Confidence 47777777744433
No 135
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.32 E-value=31 Score=23.74 Aligned_cols=22 Identities=14% Similarity=0.022 Sum_probs=17.0
Q ss_pred hhhhHhHHHHHHHHHHHHHHHH
Q 020068 299 QWGCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 299 ~~~G~~lv~~Gv~~~~~~k~~~ 320 (331)
-++++++++.|+++|....+++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4678999999999887765554
No 136
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=32.71 E-value=4.2e+02 Score=24.78 Aligned_cols=106 Identities=10% Similarity=0.009 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhH--HHHHhhcchHHHHHHHHHhh-------ccccCchhHHHHHHHhhhhhhhcc
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPA--QVLAKSSKMIPVMLMGTLVY-------GIRYTLPEYICTLLVAGGVSSFAL 153 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~--~~~~ks~~pi~v~l~~~l~~-------~e~~~~~~~~~~~~i~~Gv~l~~~ 153 (331)
.-...+++-..+....-.+.+|+-++. ...+-.+..+=+ ++-.++. .++-....++++++..+|+++...
T Consensus 75 ~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GT-lippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 75 WTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGT-LIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhh-chHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 334455555566666778888865443 222222221111 1222222 233445788999999999999987
Q ss_pred ccCCccccc--cCCCCCCchhHHHHHHHHHHhhhchHH
Q 020068 154 MKTSSKTIS--KLAHPNAPLGYGLCFLNLAFDGFTNAT 189 (331)
Q Consensus 154 ~~~~~~~~~--~~~~~~~~~G~~l~l~a~~~~a~~~~~ 189 (331)
.....+++. +.++.+--.|++++++|-+++|..+.-
T Consensus 154 AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g 191 (344)
T PF06379_consen 154 AGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFG 191 (344)
T ss_pred HHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 543322221 112222347999999888888776643
No 137
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=31.14 E-value=58 Score=24.64 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=28.8
Q ss_pred HHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 122 MLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 122 ~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
.+.....=|++++++++.+..+..+|+.++..++
T Consensus 73 L~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 73 LAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 4456677799999999999999999999887764
No 138
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=30.01 E-value=1.4e+02 Score=21.97 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHHHHHhHHhh
Q 020068 272 NTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLKWRKLQRLQ 325 (331)
Q Consensus 272 ~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~~~~ 325 (331)
.+.++..+-+.++.....+..++. .+.+..+...+........+-.|+.++
T Consensus 5 pN~iT~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~D~~DG~lAR~~~~ 55 (101)
T PF01066_consen 5 PNAITLLRLLLGFLAALLLLQGRP---LLLAALLLFLAFLLDGLDGWLARRRNQ 55 (101)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345555666666666666655544 567778888887877776655544443
No 139
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=29.92 E-value=2.3e+02 Score=24.81 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.0
Q ss_pred CCCCchhhhhHhHHHHHHHHHHHHHHHHhHHhh
Q 020068 293 NPLSSKQWGCVLMVFSGLSYQIYLKWRKLQRLQ 325 (331)
Q Consensus 293 e~~t~~~~~G~~lv~~Gv~~~~~~k~~~~~~~~ 325 (331)
++++...++|+++.+.|+.++...+.++.+-|+
T Consensus 115 ~~~~~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~ 147 (235)
T PF06966_consen 115 PPLNWLDILGIALFLIGFLLETVADQQKYRFKK 147 (235)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 377888999999999999999998888877443
No 140
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=29.86 E-value=89 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=38.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 020068 7 GFRRVLLLAFCVAGIWSAYIYQGILQETLSTKRFGPDGKRFQHLAFLNLAQNVVCLIWSYIM 68 (331)
Q Consensus 7 ~~~~~~~~~~~~~~i~~~~~~~~~l~e~i~~~~~~~~~~~f~~p~~lt~~q~~~~~l~~~~~ 68 (331)
+.+++.++++++....++...+.++.+...... .+ ||.+++-+.......+.+.+
T Consensus 51 ~~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m-----~N--Y~fFL~QlTt~gyvpIffaV 105 (130)
T PF08627_consen 51 YSKENFKLLVYVVVYVVSGVINRVLYKKMTNPM-----KN--YPFFLNQLTTFGYVPIFFAV 105 (130)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cc--chHHHHHhcccceehHHHHH
Confidence 445678999999999999999999998887532 12 46677766554444444444
No 141
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=29.76 E-value=81 Score=19.86 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHHHHHHHhH
Q 020068 302 CVLMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~~ 322 (331)
-.++++++....++.++|+.+
T Consensus 13 ~t~~~l~~l~~~~~~~~r~~~ 33 (46)
T PF04995_consen 13 VTALVLAGLIVWSLRRRRRLR 33 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777666533
No 142
>COG0682 Lgt Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.36 E-value=45 Score=30.26 Aligned_cols=31 Identities=23% Similarity=0.207 Sum_probs=22.9
Q ss_pred chhhhhHhHHHHHHHHHHHHHHHHhHHhhhh
Q 020068 297 SKQWGCVLMVFSGLSYQIYLKWRKLQRLQKK 327 (331)
Q Consensus 297 ~~~~~G~~lv~~Gv~~~~~~k~~~~~~~~~~ 327 (331)
.-|++.+.+++.|+....+.++|++++++.+
T Consensus 254 mgqilSi~mIl~Gi~~~~~~~~k~~~~~~~~ 284 (287)
T COG0682 254 MGQILSIPMILLGLWLIIYLYKKAKKKPEYA 284 (287)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCcccc
Confidence 3688999999999988777776655554333
No 143
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.90 E-value=61 Score=21.92 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=18.9
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhHHhhhh
Q 020068 300 WGCVLMVFSGLSYQIYLKWRKLQRLQKK 327 (331)
Q Consensus 300 ~~G~~lv~~Gv~~~~~~k~~~~~~~~~~ 327 (331)
.+-+.+++.|++++.+++.||.+..+.+
T Consensus 15 t~~~~l~fiavi~~ayr~~~K~~~d~aa 42 (60)
T COG4736 15 TIAFTLFFIAVIYFAYRPGKKGEFDEAA 42 (60)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHh
Confidence 3445678888888888877766654433
No 144
>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family
Probab=27.95 E-value=2.2e+02 Score=23.39 Aligned_cols=51 Identities=6% Similarity=0.015 Sum_probs=31.6
Q ss_pred CCchhHHHHHHHHHHhhhchHHHHHHHhhCCCCChhhHHHHHHHHHHHHHH
Q 020068 168 NAPLGYGLCFLNLAFDGFTNATQDSITARYPKTSAWDIMLGMNLWGTIYNL 218 (331)
Q Consensus 168 ~~~~G~~l~l~a~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 218 (331)
....|-.+++.|-+.++..-..--.+++++.....+.+|||..+.+..+.+
T Consensus 119 KWamGs~LlLvsfvlSs~GllsFviLL~~~vtl~GFTL~fWCeFtAsFLfF 169 (184)
T PF15108_consen 119 KWAMGSVLLLVSFVLSSGGLLSFVILLRNQVTLIGFTLMFWCEFTASFLFF 169 (184)
T ss_pred hhhhhhHHHHHHHHHhcccHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHH
Confidence 345788887777666554333222344444345678889998887765554
No 145
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=27.16 E-value=57 Score=21.86 Aligned_cols=23 Identities=9% Similarity=-0.140 Sum_probs=15.1
Q ss_pred CCCchhhhhHhHHHHHHHHHHHH
Q 020068 294 PLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 294 ~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
..+...++|..++.+|...++..
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y 37 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVY 37 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677877777776665543
No 146
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=27.02 E-value=3.8e+02 Score=22.53 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=17.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHhh
Q 020068 201 SAWDIMLGMNLWGTIYNLFYMF 222 (331)
Q Consensus 201 ~~~~~~~~~~~~~~i~~~~~~~ 222 (331)
...+++-|.-.++.+..+..++
T Consensus 52 a~~qIiVYvGAI~VLflFvIMl 73 (186)
T MTH00057 52 ALIFLIVYVGAIAILFLFVIMM 73 (186)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4578888999888888888776
No 147
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=26.92 E-value=50 Score=28.31 Aligned_cols=6 Identities=33% Similarity=0.717 Sum_probs=2.8
Q ss_pred HHHHHH
Q 020068 252 CGAVGQ 257 (331)
Q Consensus 252 ~~~~~~ 257 (331)
.|++|+
T Consensus 116 GGAlGN 121 (201)
T PRK14766 116 AGSWGN 121 (201)
T ss_pred HHHHHH
Confidence 344555
No 148
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=26.50 E-value=82 Score=22.98 Aligned_cols=19 Identities=5% Similarity=0.018 Sum_probs=11.7
Q ss_pred chhhhhHhHHHHHHHHHHH
Q 020068 297 SKQWGCVLMVFSGLSYQIY 315 (331)
Q Consensus 297 ~~~~~G~~lv~~Gv~~~~~ 315 (331)
..-.+|..+.+.|...+..
T Consensus 4 ~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3446677777777665544
No 149
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=25.08 E-value=97 Score=27.21 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=17.2
Q ss_pred hhH-hHHHHHHHHHHHHHHHHhHHhhhhc
Q 020068 301 GCV-LMVFSGLSYQIYLKWRKLQRLQKKR 328 (331)
Q Consensus 301 ~G~-~lv~~Gv~~~~~~k~~~~~~~~~~~ 328 (331)
+.+ .+|+..+.+.-|+|+|.-+.++|+|
T Consensus 204 l~iG~iIi~tLtYvGwRKYrgek~~~k~r 232 (232)
T PF09577_consen 204 LSIGGIIIATLTYVGWRKYRGEKEKRKKR 232 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344 3444455556788888876666554
No 150
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=24.72 E-value=84 Score=18.22 Aligned_cols=20 Identities=10% Similarity=0.514 Sum_probs=15.9
Q ss_pred hHhHHHHHHHHHHHHHHHHh
Q 020068 302 CVLMVFSGLSYQIYLKWRKL 321 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~ 321 (331)
.++++++|..++.+.|.+.+
T Consensus 5 ~i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 5 AIILILGGAAFYGFKKYQNH 24 (33)
T ss_pred eehhhhhhHHHHHHHHHHHH
Confidence 45688999999998888754
No 151
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=24.20 E-value=92 Score=23.70 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHH
Q 020068 254 AVGQNFIFLTISRFGSLTNTTITT-TRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 254 ~~~~~~~~~~i~~~sa~t~si~~~-l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
-.|...+|..+.+.+-+.+..+.+ +.-+++.+.+..+=.|...-.-..|..+++.|+.+
T Consensus 63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 345566777777777555444433 45566777777654445556678899999999764
No 152
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=23.70 E-value=1.4e+02 Score=18.74 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHhH
Q 020068 304 LMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 304 ~lv~~Gv~~~~~~k~~~~~ 322 (331)
++++++....++.++|+.+
T Consensus 16 ~l~l~~li~~~~~~~r~~~ 34 (45)
T TIGR03141 16 ALVLAGLILWSLLDRRRLL 34 (45)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566667776666544
No 153
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.62 E-value=3.9e+02 Score=26.14 Aligned_cols=23 Identities=9% Similarity=0.275 Sum_probs=18.8
Q ss_pred CCchhhhhHhHHHHHHHHHHHHH
Q 020068 295 LSSKQWGCVLMVFSGLSYQIYLK 317 (331)
Q Consensus 295 ~t~~~~~G~~lv~~Gv~~~~~~k 317 (331)
++.-||+++.++++|+++..+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999987665443
No 154
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.61 E-value=17 Score=32.65 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHH
Q 020068 258 NFIFLTISRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSY 312 (331)
Q Consensus 258 ~~~~~~i~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~ 312 (331)
.+-.++++..+..-.-+--.+-.++++++++++++++=+..-..++.+++.|-.+
T Consensus 117 ~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 117 SFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred hccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 3455666666655555555666789999999999998877777777777777544
No 155
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=23.54 E-value=59 Score=29.36 Aligned_cols=24 Identities=21% Similarity=0.036 Sum_probs=19.4
Q ss_pred CCchhhhhHhHHHHHHHHHHHHHH
Q 020068 295 LSSKQWGCVLMVFSGLSYQIYLKW 318 (331)
Q Consensus 295 ~t~~~~~G~~lv~~Gv~~~~~~k~ 318 (331)
+|..|++++.+++.|+.+..+.++
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~~~ 269 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLAYK 269 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999999999877655443
No 156
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=23.51 E-value=99 Score=19.27 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=18.8
Q ss_pred cCCCCCchhhhhHhHHHH-HHHHHHHHHHHHh
Q 020068 291 SGNPLSSKQWGCVLMVFS-GLSYQIYLKWRKL 321 (331)
Q Consensus 291 f~e~~t~~~~~G~~lv~~-Gv~~~~~~k~~~~ 321 (331)
|++++.+...+.++.+++ ++++..+..+|-+
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~~ 38 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRKMK 38 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 788888888887766544 3444444444433
No 157
>PF13994 PgaD: PgaD-like protein
Probab=22.35 E-value=1.4e+02 Score=23.79 Aligned_cols=27 Identities=11% Similarity=0.279 Sum_probs=14.1
Q ss_pred CchhhhhHhHHHHHHHHHHHHHHHHhH
Q 020068 296 SSKQWGCVLMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 296 t~~~~~G~~lv~~Gv~~~~~~k~~~~~ 322 (331)
...+.-..+.++.++.+-.|.+.++.|
T Consensus 62 ~~l~~y~~i~~~~a~~Li~Wa~yn~~R 88 (138)
T PF13994_consen 62 NTLQIYLLIALVNAVILILWAKYNRLR 88 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555665665555444
No 158
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=22.04 E-value=3.8e+02 Score=20.74 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=15.1
Q ss_pred CCCCCCCchhHHHHHHHHH
Q 020068 1 MENHGSGFRRVLLLAFCVA 19 (331)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (331)
|++|++.|++++-+.+.++
T Consensus 1 M~~~~~~ek~tLlLaliaG 19 (117)
T PF07226_consen 1 MTEQNRSEKKTLLLALIAG 19 (117)
T ss_pred CCCccCCchhhHHHHHHHH
Confidence 8899999999987776433
No 159
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=21.87 E-value=96 Score=23.22 Aligned_cols=10 Identities=20% Similarity=0.378 Sum_probs=4.5
Q ss_pred hHHHHHHHHH
Q 020068 304 LMVFSGLSYQ 313 (331)
Q Consensus 304 ~lv~~Gv~~~ 313 (331)
.+++.++++.
T Consensus 15 ~vl~~~ifyF 24 (97)
T COG1862 15 LVLIFAIFYF 24 (97)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 160
>KOG1631 consensus Translocon-associated complex TRAP, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.52 E-value=68 Score=27.88 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHhhhh
Q 020068 304 LMVFSGLSYQIYLKWRKLQRLQKK 327 (331)
Q Consensus 304 ~lv~~Gv~~~~~~k~~~~~~~~~~ 327 (331)
+.++.+++.+++.++..|+++++.
T Consensus 194 l~llllv~~~q~L~~~sKk~~~~~ 217 (261)
T KOG1631|consen 194 LSLLLLVLSQQFLSKLSKKTKKRR 217 (261)
T ss_pred HHHHHHHHHHHHHHHhhhcccccc
Confidence 344555666777766654444433
No 161
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=21.29 E-value=2.5e+02 Score=27.18 Aligned_cols=22 Identities=9% Similarity=-0.115 Sum_probs=10.7
Q ss_pred CCCcchhhHHHHHHHHHHHHHH
Q 020068 44 GKRFQHLAFLNLAQNVVCLIWS 65 (331)
Q Consensus 44 ~~~f~~p~~lt~~q~~~~~l~~ 65 (331)
+.+|+.--+-...+.+....+.
T Consensus 310 rG~F~~~~~~~ta~~l~~y~~~ 331 (451)
T PF03023_consen 310 RGAFTAEDTQLTASALRIYALG 331 (451)
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 4567655444444444444333
No 162
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=20.21 E-value=2.7e+02 Score=18.30 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=29.6
Q ss_pred hHHHHHHHhhhhhhhccccCCccccccCCCCCCchhHHHHHHHHHHhhhchHHHHHHHh
Q 020068 137 EYICTLLVAGGVSSFALMKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSITA 195 (331)
Q Consensus 137 ~~~~~~~i~~Gv~l~~~~~~~~~~~~~~~~~~~~~G~~l~l~a~~~~a~~~~~~~~l~~ 195 (331)
..++..++++|+++...+. -|.+..+++...-|......+|..+
T Consensus 5 ~v~G~~lv~~Gii~~~lPG---------------pG~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 5 GVLGWVLVVAGIIMLPLPG---------------PGLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhHHHHHHHHHHHhhcCCC---------------CcHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4577888889998876543 2666666666666666666666654
No 163
>COG3162 Predicted membrane protein [Function unknown]
Probab=20.19 E-value=3.9e+02 Score=20.11 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCC-CCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 020068 12 LLLAFCVAGIWSAYIYQGILQETLSTKR-FGPDGKRFQHLAFLNLAQNVVCLIWSYIMLKL 71 (331)
Q Consensus 12 ~~~~~~~~~i~~~~~~~~~l~e~i~~~~-~~~~~~~f~~p~~lt~~q~~~~~l~~~~~~~~ 71 (331)
+-+.+..+.+|+++....-++...+..+ ++ ..-+..+.+.+.|++.++++..++.++
T Consensus 27 ~~ltl~flv~Y~~filLiaf~~~~l~tp~~~---~~Vt~Gip~gvg~fv~tfVlt~IYv~r 84 (102)
T COG3162 27 VPLTLIFLVVYFGFILLIAFAPGWLATPLFG---ASVTRGIPFGVGVFVMTFVLTGIYVRR 84 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhcCcccC---CceehhHhHHHHHHHHHHHHHHHHhhH
Confidence 5566677788888877777666333333 32 124456777888999999988887654
No 164
>PHA03049 IMV membrane protein; Provisional
Probab=20.06 E-value=70 Score=21.96 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=16.6
Q ss_pred hhhhHhHHHHHHHHHHHHHHHH
Q 020068 299 QWGCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 299 ~~~G~~lv~~Gv~~~~~~k~~~ 320 (331)
-++++++++.|..+|....+|+
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999887665543
Done!