Query 020068
Match_columns 331
No_of_seqs 179 out of 1659
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:17:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.2E-07 4.3E-12 74.9 6.0 66 252-317 39-105 (137)
2 3b5d_A Multidrug transporter E 98.4 3.1E-06 1.1E-10 64.4 11.5 72 84-155 33-105 (110)
3 2i68_A Protein EMRE; transmemb 98.2 2.9E-06 1E-10 67.0 7.0 70 86-155 35-105 (137)
4 3b5d_A Multidrug transporter E 98.2 6.3E-06 2.1E-10 62.7 8.0 65 252-316 39-104 (110)
5 2jwa_A Receptor tyrosine-prote 49.9 9.1 0.00031 23.2 1.9 16 307-322 26-41 (44)
6 3l1l_A Arginine/agmatine antip 26.3 23 0.00078 32.4 1.5 29 299-327 410-438 (445)
7 2h3o_A MERF; membrane protein, 21.1 20 0.00067 23.3 -0.1 43 278-320 12-56 (61)
8 3rko_J NADH-quinone oxidoreduc 20.7 2.6E+02 0.0088 22.4 6.5 24 285-308 128-151 (184)
9 1v54_M VIIIB, IX, cytochrome C 17.3 1.4E+02 0.0049 18.1 3.2 36 292-327 7-46 (46)
10 2jo1_A Phospholemman; FXYD1, N 17.1 1.5E+02 0.0051 19.7 3.5 31 300-330 22-53 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.52 E-value=1.2e-07 Score=74.92 Aligned_cols=66 Identities=12% Similarity=0.080 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHHH
Q 020068 252 CGAVGQNFIFLTISRFGSLTNTTI-TTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYLK 317 (331)
Q Consensus 252 ~~~~~~~~~~~~i~~~sa~t~si~-~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~k 317 (331)
+..++++++.+++++.++.++..+ ..+.|+++.++|+++|||++|+.+++|+++++.|+++....+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445777889999999999998888 899999999999999999999999999999999999877643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=3.1e-06 Score=64.39 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhHHhHhhhcccchhHHHHH-hhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 84 YWSAGITNTIGPAMGIEALKYISYPAQVLA-KSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 84 ~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~-ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
.+...+++..+..+...+++++|.+.+-.+ ....|+.+.+++.+++||++++++++++.++++|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 333444677888889999999999988666 899999999999999999999999999999999999987644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.20 E-value=2.9e-06 Score=66.98 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=50.6
Q ss_pred HHHHHHHhhhHHhHhhhcccchhHHHHH-hhcchHHHHHHHHHhhccccCchhHHHHHHHhhhhhhhcccc
Q 020068 86 SAGITNTIGPAMGIEALKYISYPAQVLA-KSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGVSSFALMK 155 (331)
Q Consensus 86 ~~~~~~~~~~~~~~~sl~~i~~~~~~~~-ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv~l~~~~~ 155 (331)
...+++..+..+.+.+++++|.+.+..+ .+..|+.++++++++++|+++++++++++++++|+.+....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344677888999999999999977666 899999999999999999999999999999999999987644
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.17 E-value=6.3e-06 Score=62.70 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHH-HHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHHHH
Q 020068 252 CGAVGQNFIFLTISRFGSLTNTTI-TTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQIYL 316 (331)
Q Consensus 252 ~~~~~~~~~~~~i~~~sa~t~si~-~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~~~ 316 (331)
+...+++++.+++++.+..++..+ ..+.++.+.++|+++|||++|+.+++|+++++.|+......
T Consensus 39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344667788889999999998777 89999999999999999999999999999999999886543
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=49.93 E-value=9.1 Score=23.22 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhH
Q 020068 307 FSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 307 ~~Gv~~~~~~k~~~~~ 322 (331)
+.|+.+..|.|+|+++
T Consensus 26 i~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 26 VLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhheehhhhh
Confidence 3344444455544433
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=26.34 E-value=23 Score=32.35 Aligned_cols=29 Identities=3% Similarity=-0.261 Sum_probs=20.2
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHhHHhhhh
Q 020068 299 QWGCVLMVFSGLSYQIYLKWRKLQRLQKK 327 (331)
Q Consensus 299 ~~~G~~lv~~Gv~~~~~~k~~~~~~~~~~ 327 (331)
.+.|..+++.|+.+|.+.++|++++++.+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~~~~~~~~ 438 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRLHKNPYPL 438 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCSSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCcccc
Confidence 45588888899888888776665544333
No 7
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=21.12 E-value=20 Score=23.33 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCCCCCchhh--hhHhHHHHHHHHHHHHHHHH
Q 020068 278 TRKFVSIVVSSVLSGNPLSSKQW--GCVLMVFSGLSYQIYLKWRK 320 (331)
Q Consensus 278 l~~v~tills~~~f~e~~t~~~~--~G~~lv~~Gv~~~~~~k~~~ 320 (331)
..|+..+++|..=....+++... +=..-.+.|..+|...|+|+
T Consensus 12 ~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~~ 56 (61)
T 2h3o_A 12 FTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKRQ 56 (61)
T ss_dssp ----CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555555544433333332221 12334455878887777553
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.75 E-value=2.6e+02 Score=22.44 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCCchhhhhHhHHHH
Q 020068 285 VVSSVLSGNPLSSKQWGCVLMVFS 308 (331)
Q Consensus 285 lls~~~f~e~~t~~~~~G~~lv~~ 308 (331)
-+|..+|+|.+=+.+..|+.+...
T Consensus 128 ~iG~~Lft~Y~lpFElaSvlLLvA 151 (184)
T 3rko_J 128 AVGITLFGPYVLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHTTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999877543
No 9
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=17.34 E-value=1.4e+02 Score=18.09 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCCCch-hhhhHhHHHHHHHH---HHHHHHHHhHHhhhh
Q 020068 292 GNPLSSK-QWGCVLMVFSGLSY---QIYLKWRKLQRLQKK 327 (331)
Q Consensus 292 ~e~~t~~-~~~G~~lv~~Gv~~---~~~~k~~~~~~~~~~ 327 (331)
.++++.. +.+|+.+++.+++. +....-+.-|+++++
T Consensus 7 ~~~~s~~E~aigl~v~f~~~L~PagWVLshL~~YKk~e~~ 46 (46)
T 1v54_M 7 KTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDNYKKSSAA 46 (46)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccccC
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=17.12 E-value=1.5e+02 Score=19.72 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhH-HhhhhcCC
Q 020068 300 WGCVLMVFSGLSYQIYLKWRKLQ-RLQKKRKP 330 (331)
Q Consensus 300 ~~G~~lv~~Gv~~~~~~k~~~~~-~~~~~~~~ 330 (331)
+++.++.+.|+.+....|-|-+. +|++..+|
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p 53 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEP 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCC
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCC
Done!