Query 020068
Match_columns 331
No_of_seqs 179 out of 1659
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 11:18:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020068.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020068hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 24.1 1.2E+02 0.0084 23.7 7.4 62 83-148 4-65 (248)
2 d1iwga8 f.35.1.1 (A:513-566,A: 14.9 2.2E+02 0.016 21.2 8.6 34 281-314 95-128 (222)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 14.5 2.2E+02 0.016 20.8 8.2 49 265-313 61-109 (199)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 14.4 1E+02 0.0075 20.0 4.4 14 299-312 68-81 (103)
5 d3dtub2 f.17.2.1 (B:30-129) Ba 10.1 56 0.0041 21.5 1.7 21 302-322 38-58 (100)
6 d1fftb2 f.17.2.1 (B:27-117) Cy 8.1 24 0.0017 23.2 -1.1 22 302-323 27-48 (91)
7 d1skza1 g.3.15.1 (A:7-58) Fact 7.9 31 0.0022 19.0 -0.4 9 3-11 32-40 (52)
8 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.0 97 0.0071 20.5 1.3 20 302-321 44-63 (107)
9 d2e74g1 f.23.26.1 (G:9-35) Pet 5.4 1.9E+02 0.014 13.6 2.2 18 301-318 3-21 (27)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 5.2 6.4E+02 0.046 19.4 17.2 6 199-204 281-286 (447)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=24.08 E-value=1.2e+02 Score=23.72 Aligned_cols=62 Identities=8% Similarity=-0.015 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhhHHhHhhhcccchhHHHHHhhcchHHHHHHHHHhhccccCchhHHHHHHHhhhh
Q 020068 83 TYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTLPEYICTLLVAGGV 148 (331)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~sl~~i~~~~~~~~ks~~pi~v~l~~~l~~~e~~~~~~~~~~~~i~~Gv 148 (331)
+++.+++......+........=+...+.++ .+.+.++.++++.+|.-+.+|+.=.+++..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 4667777766665555554444444444332 3455666788888888777776544444433
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.94 E-value=2.2e+02 Score=21.16 Aligned_cols=34 Identities=6% Similarity=-0.028 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHHH
Q 020068 281 FVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQI 314 (331)
Q Consensus 281 v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~~ 314 (331)
+...+.+..+.+.+++....+|.++.++...-+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~ 128 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNA 128 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhhhHH
Confidence 3455667788999999998888777555544443
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.50 E-value=2.2e+02 Score=20.80 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=31.2
Q ss_pred HhhchHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhHhHHHHHHHHH
Q 020068 265 SRFGSLTNTTITTTRKFVSIVVSSVLSGNPLSSKQWGCVLMVFSGLSYQ 313 (331)
Q Consensus 265 ~~~sa~t~si~~~l~~v~tills~~~f~e~~t~~~~~G~~lv~~Gv~~~ 313 (331)
+..-+.........-.+........++|.+++.....+..+.++...-+
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 3333333444444445566666678889999988888877766665544
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=14.44 E-value=1e+02 Score=20.02 Aligned_cols=14 Identities=14% Similarity=0.389 Sum_probs=7.0
Q ss_pred hhhhHhHHHHHHHH
Q 020068 299 QWGCVLMVFSGLSY 312 (331)
Q Consensus 299 ~~~G~~lv~~Gv~~ 312 (331)
++++++.++.|+.+
T Consensus 68 r~~~~~~~~~Gi~~ 81 (103)
T d1r3jc_ 68 RCVAVVVMVAGITS 81 (103)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 5
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.13 E-value=56 Score=21.50 Aligned_cols=21 Identities=5% Similarity=0.121 Sum_probs=13.3
Q ss_pred hHhHHHHHHHHHHHHHHHHhH
Q 020068 302 CVLMVFSGLSYQIYLKWRKLQ 322 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~~ 322 (331)
++.+++.|+..+...|+|+++
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHhhhhhccC
Confidence 445566677777777766543
No 6
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=8.15 E-value=24 Score=23.16 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=14.7
Q ss_pred hHhHHHHHHHHHHHHHHHHhHH
Q 020068 302 CVLMVFSGLSYQIYLKWRKLQR 323 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~~~ 323 (331)
.+.+...|.++|...|.|+++.
T Consensus 27 iv~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 27 IVVIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp TTTTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHHHhhheeeeccCC
Confidence 3455667777788778776553
No 7
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=7.94 E-value=31 Score=19.03 Aligned_cols=9 Identities=33% Similarity=0.301 Sum_probs=6.2
Q ss_pred CCCCCchhH
Q 020068 3 NHGSGFRRV 11 (331)
Q Consensus 3 ~~~~~~~~~ 11 (331)
|||++++|+
T Consensus 32 phgfqrsry 40 (52)
T d1skza1 32 PHGFQRSRY 40 (52)
T ss_dssp TTCEEECTT
T ss_pred CCccccccc
Confidence 677777664
No 8
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=6.01 E-value=97 Score=20.55 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=12.1
Q ss_pred hHhHHHHHHHHHHHHHHHHh
Q 020068 302 CVLMVFSGLSYQIYLKWRKL 321 (331)
Q Consensus 302 G~~lv~~Gv~~~~~~k~~~~ 321 (331)
++.+.+.|+..|...|.|++
T Consensus 44 ~I~~~V~~~~~~~~~~~r~~ 63 (107)
T d3ehbb2 44 AVTIFVCLLLLICIVRFNRR 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHSBTT
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 44455666777777666544
No 9
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.44 E-value=1.9e+02 Score=13.59 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=8.4
Q ss_pred hhHhHH-HHHHHHHHHHHH
Q 020068 301 GCVLMV-FSGLSYQIYLKW 318 (331)
Q Consensus 301 ~G~~lv-~~Gv~~~~~~k~ 318 (331)
.|.+++ +.|.++..+...
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 455444 445554444443
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.22 E-value=6.4e+02 Score=19.38 Aligned_cols=6 Identities=0% Similarity=-0.351 Sum_probs=2.4
Q ss_pred CCChhh
Q 020068 199 KTSAWD 204 (331)
Q Consensus 199 ~~~~~~ 204 (331)
+.+..+
T Consensus 281 ~~~~~~ 286 (447)
T d1pw4a_ 281 HFALDK 286 (447)
T ss_dssp CCCHHH
T ss_pred ccccch
Confidence 334433
Done!