Query 020069
Match_columns 331
No_of_seqs 221 out of 1178
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 06:46:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14143 heat shock protein Gr 100.0 4.7E-47 1E-51 353.8 21.6 168 148-328 65-232 (238)
2 PRK14148 heat shock protein Gr 100.0 5.6E-47 1.2E-51 344.2 20.1 157 149-319 39-195 (195)
3 PRK14161 heat shock protein Gr 100.0 6.5E-47 1.4E-51 339.7 19.8 160 149-320 18-178 (178)
4 PRK14141 heat shock protein Gr 100.0 1.6E-46 3.4E-51 344.4 20.2 157 158-322 39-195 (209)
5 PRK14153 heat shock protein Gr 100.0 1.3E-46 2.8E-51 341.6 19.3 156 153-322 36-191 (194)
6 PRK14155 heat shock protein Gr 100.0 1.7E-46 3.7E-51 344.1 20.1 156 158-324 21-177 (208)
7 PRK14147 heat shock protein Gr 100.0 1.8E-46 3.9E-51 335.1 19.1 146 158-319 26-171 (172)
8 PRK14151 heat shock protein Gr 100.0 2E-46 4.4E-51 335.9 19.3 149 157-318 27-175 (176)
9 PRK14163 heat shock protein Gr 100.0 4E-46 8.7E-51 342.5 20.6 151 154-325 44-194 (214)
10 PRK14140 heat shock protein Gr 100.0 5.3E-46 1.2E-50 336.9 20.3 154 151-318 38-191 (191)
11 PRK14158 heat shock protein Gr 100.0 5E-46 1.1E-50 337.8 19.6 152 152-318 42-194 (194)
12 PRK14139 heat shock protein Gr 100.0 8.3E-46 1.8E-50 334.2 19.6 146 157-319 39-184 (185)
13 PRK14160 heat shock protein Gr 100.0 9E-46 1.9E-50 339.7 19.9 160 141-318 52-211 (211)
14 PRK14162 heat shock protein Gr 100.0 9E-46 2E-50 336.1 19.7 149 156-318 45-194 (194)
15 PRK14145 heat shock protein Gr 100.0 1.2E-45 2.6E-50 335.6 19.5 150 152-318 47-196 (196)
16 PRK14150 heat shock protein Gr 100.0 2E-45 4.3E-50 333.6 20.7 153 150-318 41-193 (193)
17 PRK14146 heat shock protein Gr 100.0 1.8E-45 3.8E-50 338.8 19.7 153 154-320 58-214 (215)
18 COG0576 GrpE Molecular chapero 100.0 2.2E-45 4.9E-50 333.1 19.9 151 157-320 43-193 (193)
19 PRK14144 heat shock protein Gr 100.0 2.4E-45 5.1E-50 334.3 20.0 150 155-319 50-199 (199)
20 PRK14159 heat shock protein Gr 100.0 1.9E-45 4.1E-50 329.7 18.2 145 159-318 32-176 (176)
21 PRK14154 heat shock protein Gr 100.0 4.8E-45 1E-49 334.2 19.8 148 157-317 59-207 (208)
22 PRK10325 heat shock protein Gr 100.0 5E-45 1.1E-49 331.9 18.9 139 169-320 58-196 (197)
23 PRK14149 heat shock protein Gr 100.0 7.4E-45 1.6E-49 329.4 19.2 146 159-319 45-190 (191)
24 PRK14157 heat shock protein Gr 100.0 8.1E-44 1.7E-48 329.5 18.1 143 156-319 83-225 (227)
25 KOG3003 Molecular chaperone of 100.0 2.5E-43 5.4E-48 325.5 18.9 173 143-322 60-235 (236)
26 PRK14156 heat shock protein Gr 100.0 8E-43 1.7E-47 312.9 18.1 154 145-318 23-177 (177)
27 PRK14142 heat shock protein Gr 100.0 4.2E-42 9.1E-47 317.0 17.4 142 163-324 46-188 (223)
28 PRK14164 heat shock protein Gr 100.0 3.9E-41 8.4E-46 310.5 16.7 139 158-319 78-217 (218)
29 cd00446 GrpE GrpE is the adeni 100.0 6.9E-40 1.5E-44 280.9 16.8 136 167-316 2-137 (137)
30 PF01025 GrpE: GrpE; InterPro 100.0 6.2E-40 1.4E-44 286.1 12.5 152 153-318 14-165 (165)
31 PF06156 DUF972: Protein of un 84.3 3.3 7.2E-05 34.9 6.2 70 148-217 13-82 (107)
32 PTZ00464 SNF-7-like protein; P 79.7 49 0.0011 31.1 12.7 28 146-173 21-48 (211)
33 COG4026 Uncharacterized protei 73.8 58 0.0013 31.6 11.5 68 147-216 132-199 (290)
34 PF06120 Phage_HK97_TLTM: Tail 72.6 75 0.0016 31.6 12.4 77 141-217 65-147 (301)
35 PF03938 OmpH: Outer membrane 71.3 65 0.0014 27.6 11.9 48 169-216 81-128 (158)
36 PF12761 End3: Actin cytoskele 69.8 37 0.0008 31.8 9.1 35 134-168 87-121 (195)
37 COG2433 Uncharacterized conser 69.8 1.1E+02 0.0024 33.4 13.6 132 146-301 418-554 (652)
38 cd07627 BAR_Vps5p The Bin/Amph 67.9 48 0.001 30.6 9.5 54 157-210 143-196 (216)
39 COG4467 Regulator of replicati 63.8 14 0.00029 31.8 4.6 69 148-218 13-84 (114)
40 PRK13169 DNA replication intia 62.8 40 0.00087 28.7 7.3 44 147-190 12-55 (110)
41 PF14357 DUF4404: Domain of un 62.5 12 0.00027 30.1 4.0 17 247-263 69-85 (85)
42 cd07664 BAR_SNX2 The Bin/Amphi 62.3 61 0.0013 30.8 9.3 54 157-210 159-212 (234)
43 PRK07352 F0F1 ATP synthase sub 61.4 1E+02 0.0022 27.4 10.1 19 150-168 71-89 (174)
44 KOG0250 DNA repair protein RAD 61.3 1.1E+02 0.0023 35.5 12.2 42 242-283 472-516 (1074)
45 PRK14472 F0F1 ATP synthase sub 60.2 1.1E+02 0.0025 27.1 10.2 18 150-167 70-87 (175)
46 cd07623 BAR_SNX1_2 The Bin/Amp 59.6 1.4E+02 0.0031 27.6 11.2 51 159-209 151-201 (224)
47 PRK05759 F0F1 ATP synthase sub 59.4 1.1E+02 0.0025 26.2 10.2 57 149-205 55-112 (156)
48 PF15290 Syntaphilin: Golgi-lo 58.9 2E+02 0.0043 28.7 13.3 71 144-217 69-140 (305)
49 PF13805 Pil1: Eisosome compon 57.6 1.7E+02 0.0037 28.8 11.5 57 165-221 173-229 (271)
50 CHL00019 atpF ATP synthase CF0 55.2 1.5E+02 0.0032 26.6 10.1 26 181-206 119-144 (184)
51 PF09457 RBD-FIP: FIP domain ; 54.8 52 0.0011 24.2 5.8 30 144-173 1-30 (48)
52 COG1579 Zn-ribbon protein, pos 54.7 89 0.0019 30.1 9.0 51 148-198 108-158 (239)
53 PRK00409 recombination and DNA 54.5 1.6E+02 0.0034 32.8 12.1 10 290-299 650-659 (782)
54 KOG2911 Uncharacterized conser 53.5 2.9E+02 0.0063 29.0 13.9 37 141-177 231-267 (439)
55 PF07795 DUF1635: Protein of u 53.0 1.6E+02 0.0035 28.0 10.2 55 144-202 2-60 (214)
56 TIGR03185 DNA_S_dndD DNA sulfu 52.4 3.3E+02 0.0071 29.3 14.2 35 153-187 431-465 (650)
57 COG0711 AtpF F0F1-type ATP syn 52.2 1.7E+02 0.0037 25.9 11.7 75 142-216 50-125 (161)
58 PF09325 Vps5: Vps5 C terminal 52.1 1.2E+02 0.0025 27.6 9.1 52 159-210 165-216 (236)
59 KOG2856 Adaptor protein PACSIN 51.9 2.8E+02 0.0061 28.9 12.3 56 140-199 171-226 (472)
60 PRK14150 heat shock protein Gr 50.8 1.3E+02 0.0027 27.9 9.1 24 179-202 56-79 (193)
61 PRK13460 F0F1 ATP synthase sub 49.5 1.9E+02 0.0041 25.7 10.1 119 148-281 41-160 (173)
62 PF09006 Surfac_D-trimer: Lung 48.8 46 0.001 24.4 4.6 27 160-186 2-28 (46)
63 PRK14155 heat shock protein Gr 48.7 2.3E+02 0.005 26.6 10.6 28 166-193 40-67 (208)
64 PRK00409 recombination and DNA 47.1 2E+02 0.0043 32.0 11.4 52 146-197 519-570 (782)
65 KOG0796 Spliceosome subunit [R 47.0 2E+02 0.0044 29.0 10.3 96 150-264 122-234 (319)
66 TIGR01069 mutS2 MutS2 family p 46.8 2.5E+02 0.0054 31.3 12.1 9 290-298 638-646 (771)
67 TIGR03321 alt_F1F0_F0_B altern 46.7 2.5E+02 0.0055 26.4 13.2 101 172-281 91-195 (246)
68 PF11559 ADIP: Afadin- and alp 46.3 1.4E+02 0.0031 25.7 8.3 52 145-196 68-119 (151)
69 PRK11637 AmiB activator; Provi 46.0 97 0.0021 31.4 8.2 49 148-196 87-135 (428)
70 cd07665 BAR_SNX1 The Bin/Amphi 45.4 2E+02 0.0043 27.5 9.7 48 157-204 159-206 (234)
71 KOG0995 Centromere-associated 45.2 2.8E+02 0.006 30.2 11.5 36 241-276 370-406 (581)
72 PRK14473 F0F1 ATP synthase sub 44.7 2.2E+02 0.0047 24.9 10.3 18 150-167 60-77 (164)
73 PF09755 DUF2046: Uncharacteri 44.4 3E+02 0.0065 27.7 11.0 33 141-173 18-50 (310)
74 PF10146 zf-C4H2: Zinc finger- 44.3 2.9E+02 0.0063 26.3 11.6 67 152-219 34-103 (230)
75 TIGR01069 mutS2 MutS2 family p 43.9 2.5E+02 0.0054 31.3 11.5 27 165-191 526-552 (771)
76 PF04977 DivIC: Septum formati 43.9 92 0.002 23.4 6.0 25 159-183 26-50 (80)
77 KOG1962 B-cell receptor-associ 43.8 61 0.0013 30.8 5.9 33 157-189 179-211 (216)
78 PF06810 Phage_GP20: Phage min 43.7 2.4E+02 0.0051 25.1 9.5 60 145-204 29-92 (155)
79 TIGR03752 conj_TIGR03752 integ 43.5 2.4E+02 0.0051 29.9 10.6 45 147-191 63-107 (472)
80 PF03194 LUC7: LUC7 N_terminus 43.3 1.7E+02 0.0038 28.0 9.1 94 149-261 122-235 (254)
81 PRK13453 F0F1 ATP synthase sub 43.2 2.4E+02 0.0052 25.1 10.5 119 148-281 43-162 (173)
82 PF06409 NPIP: Nuclear pore co 42.0 74 0.0016 30.9 6.2 45 150-194 127-171 (265)
83 PRK04406 hypothetical protein; 41.8 1.7E+02 0.0038 23.1 8.4 45 145-189 6-50 (75)
84 PF04977 DivIC: Septum formati 41.7 1.1E+02 0.0024 22.9 6.2 28 149-176 23-50 (80)
85 PF03357 Snf7: Snf7; InterPro 40.8 2.1E+02 0.0046 24.4 8.5 25 238-262 92-121 (171)
86 PRK11637 AmiB activator; Provi 40.5 1.9E+02 0.0041 29.3 9.3 8 290-297 346-353 (428)
87 PF05276 SH3BP5: SH3 domain-bi 40.4 3.4E+02 0.0075 26.1 10.9 59 160-219 17-75 (239)
88 PF07798 DUF1640: Protein of u 40.1 2.6E+02 0.0056 25.0 9.2 34 165-198 74-107 (177)
89 PRK00888 ftsB cell division pr 39.9 1.2E+02 0.0025 25.4 6.5 32 154-185 31-62 (105)
90 PF13870 DUF4201: Domain of un 39.9 2.7E+02 0.0058 24.7 9.7 45 143-187 49-100 (177)
91 PRK09039 hypothetical protein; 39.9 2.7E+02 0.0059 27.8 10.2 42 149-190 143-184 (343)
92 COG3883 Uncharacterized protei 39.9 2.1E+02 0.0046 28.0 9.1 53 145-197 54-106 (265)
93 KOG4196 bZIP transcription fac 39.4 1.3E+02 0.0028 26.7 6.8 25 163-187 87-111 (135)
94 PRK14143 heat shock protein Gr 39.1 3.6E+02 0.0078 25.9 12.9 51 145-195 69-123 (238)
95 PRK00846 hypothetical protein; 38.4 2.1E+02 0.0045 23.0 8.1 53 143-195 6-58 (77)
96 PF08172 CASP_C: CASP C termin 37.8 1.3E+02 0.0028 29.0 7.2 47 141-187 84-130 (248)
97 PRK14127 cell division protein 37.6 1.8E+02 0.0039 24.8 7.3 46 143-188 23-68 (109)
98 PRK02793 phi X174 lysis protei 37.6 2E+02 0.0043 22.5 8.6 43 147-189 5-47 (72)
99 TIGR02169 SMC_prok_A chromosom 37.5 5.7E+02 0.012 28.6 13.2 21 241-261 1018-1038(1164)
100 PRK14160 heat shock protein Gr 37.4 3.6E+02 0.0079 25.5 10.8 28 177-204 77-104 (211)
101 PLN03217 transcription factor 37.1 1.6E+02 0.0034 24.5 6.6 56 142-197 16-71 (93)
102 KOG0742 AAA+-type ATPase [Post 36.9 1E+02 0.0022 32.8 6.7 20 165-184 151-170 (630)
103 PF04012 PspA_IM30: PspA/IM30 36.3 3E+02 0.0064 25.1 9.2 35 151-185 99-133 (221)
104 COG4942 Membrane-bound metallo 35.7 3.3E+02 0.0071 28.5 10.2 43 145-187 54-96 (420)
105 COG1579 Zn-ribbon protein, pos 35.6 4.2E+02 0.009 25.6 13.4 51 145-195 30-83 (239)
106 PF06890 Phage_Mu_Gp45: Bacter 35.1 20 0.00044 32.4 1.3 31 46-76 14-45 (162)
107 COG2433 Uncharacterized conser 35.0 4.7E+02 0.01 28.8 11.4 40 149-188 428-467 (652)
108 PRK14474 F0F1 ATP synthase sub 34.9 4.1E+02 0.0089 25.3 10.7 38 173-210 92-129 (250)
109 PF05529 Bap31: B-cell recepto 34.4 65 0.0014 29.0 4.5 29 161-189 158-186 (192)
110 cd07651 F-BAR_PombeCdc15_like 34.2 3.8E+02 0.0083 24.8 10.7 52 164-216 150-201 (236)
111 PRK10780 periplasmic chaperone 34.1 3.3E+02 0.0071 24.0 11.4 16 251-266 126-141 (165)
112 PRK04325 hypothetical protein; 33.9 2.3E+02 0.005 22.2 8.4 44 146-189 5-48 (74)
113 PF04740 LXG: LXG domain of WX 33.3 3.5E+02 0.0076 24.1 14.1 77 145-222 5-82 (204)
114 PRK14157 heat shock protein Gr 32.9 4.5E+02 0.0098 25.2 14.5 30 164-193 102-131 (227)
115 PRK08475 F0F1 ATP synthase sub 32.6 3.6E+02 0.0078 24.0 10.6 36 173-208 109-144 (167)
116 COG1196 Smc Chromosome segrega 32.6 7.6E+02 0.017 28.6 13.5 82 156-261 948-1029(1163)
117 KOG1853 LIS1-interacting prote 32.5 4.6E+02 0.0099 26.1 10.0 66 153-218 48-129 (333)
118 cd00632 Prefoldin_beta Prefold 32.4 2.1E+02 0.0045 23.4 6.8 44 143-189 59-102 (105)
119 KOG0933 Structural maintenance 32.1 9E+02 0.019 28.5 13.5 74 148-221 682-758 (1174)
120 PF04102 SlyX: SlyX; InterPro 32.0 2.4E+02 0.0051 21.7 7.6 45 149-193 3-47 (69)
121 PRK02119 hypothetical protein; 32.0 2.5E+02 0.0054 22.0 8.5 45 146-190 5-49 (73)
122 PRK10869 recombination and rep 31.9 3.1E+02 0.0067 29.1 9.6 28 188-215 361-388 (553)
123 PF07926 TPR_MLP1_2: TPR/MLP1/ 31.5 3.3E+02 0.0071 23.2 8.4 28 169-196 85-112 (132)
124 PF07795 DUF1635: Protein of u 31.3 1.9E+02 0.0042 27.5 7.1 45 147-191 16-60 (214)
125 PF06005 DUF904: Protein of un 31.3 2.6E+02 0.0057 22.0 8.7 28 150-177 11-38 (72)
126 cd07679 F-BAR_PACSIN2 The F-BA 31.1 5.1E+02 0.011 25.3 10.7 68 139-210 161-234 (258)
127 PRK14141 heat shock protein Gr 30.7 4.7E+02 0.01 24.7 10.1 43 146-191 41-83 (209)
128 COG1322 Predicted nuclease of 30.7 6.6E+02 0.014 26.4 13.8 66 149-214 76-141 (448)
129 PRK08476 F0F1 ATP synthase sub 30.3 3.6E+02 0.0078 23.3 12.1 66 148-213 57-123 (141)
130 PRK10361 DNA recombination pro 29.6 5.4E+02 0.012 27.3 10.7 32 163-194 98-129 (475)
131 cd07622 BAR_SNX4 The Bin/Amphi 29.5 4.6E+02 0.0099 24.2 11.2 29 169-197 138-166 (201)
132 KOG0971 Microtubule-associated 28.7 1E+03 0.022 27.9 17.4 71 146-217 227-317 (1243)
133 KOG4348 Adaptor protein CMS/SE 28.7 2.2E+02 0.0047 30.3 7.5 55 143-197 569-623 (627)
134 COG4026 Uncharacterized protei 28.7 2.9E+02 0.0063 26.9 7.9 28 161-188 132-159 (290)
135 PF10211 Ax_dynein_light: Axon 28.3 4.6E+02 0.01 23.9 9.5 37 154-190 124-160 (189)
136 PF06156 DUF972: Protein of un 28.3 3.6E+02 0.0079 22.7 8.8 43 144-186 2-44 (107)
137 cd04766 HTH_HspR Helix-Turn-He 28.0 1.2E+02 0.0027 23.9 4.6 19 169-187 70-88 (91)
138 PF05529 Bap31: B-cell recepto 27.8 1.4E+02 0.0031 26.7 5.6 32 149-180 160-191 (192)
139 PF04111 APG6: Autophagy prote 27.8 6E+02 0.013 25.1 11.6 25 240-264 168-192 (314)
140 PF08912 Rho_Binding: Rho Bind 27.6 3.1E+02 0.0068 21.7 9.2 46 159-204 12-63 (69)
141 PF07106 TBPIP: Tat binding pr 27.4 3.3E+02 0.0072 23.9 7.7 49 141-189 107-163 (169)
142 PRK14159 heat shock protein Gr 27.4 4.9E+02 0.011 23.9 11.7 52 143-194 27-78 (176)
143 KOG3990 Uncharacterized conser 27.4 6.2E+02 0.013 25.1 11.2 65 141-210 223-287 (305)
144 PF10883 DUF2681: Protein of u 27.3 2.8E+02 0.0061 22.8 6.6 37 154-190 27-63 (87)
145 cd00632 Prefoldin_beta Prefold 27.2 2.2E+02 0.0048 23.2 6.1 37 146-182 66-102 (105)
146 TIGR02338 gimC_beta prefoldin, 27.1 2.9E+02 0.0062 22.8 6.8 35 155-189 72-106 (110)
147 PF11629 Mst1_SARAH: C termina 27.1 2.3E+02 0.0051 21.1 5.4 31 141-174 6-36 (49)
148 PRK13410 molecular chaperone D 27.0 5.3E+02 0.012 28.1 10.6 16 141-156 500-515 (668)
149 PF03938 OmpH: Outer membrane 27.0 4E+02 0.0086 22.7 11.9 19 248-266 116-134 (158)
150 PF14662 CCDC155: Coiled-coil 27.0 5.4E+02 0.012 24.2 9.9 40 153-192 91-130 (193)
151 PF06008 Laminin_I: Laminin Do 26.9 4.5E+02 0.0099 24.8 9.0 108 144-280 25-132 (264)
152 TIGR02894 DNA_bind_RsfA transc 26.8 4.1E+02 0.0088 24.3 8.1 32 158-189 105-136 (161)
153 PRK09039 hypothetical protein; 26.8 4.9E+02 0.011 26.0 9.5 37 151-187 131-167 (343)
154 PRK06231 F0F1 ATP synthase sub 26.7 5.1E+02 0.011 23.9 12.1 66 145-210 95-172 (205)
155 KOG0288 WD40 repeat protein Ti 26.5 3.4E+02 0.0074 28.5 8.4 35 145-179 43-77 (459)
156 PF05335 DUF745: Protein of un 26.1 3E+02 0.0065 25.5 7.3 41 149-189 136-176 (188)
157 PF00170 bZIP_1: bZIP transcri 25.9 2.8E+02 0.006 20.6 6.4 15 158-172 34-48 (64)
158 COG0497 RecN ATPase involved i 25.7 4.8E+02 0.01 28.3 9.6 11 71-81 199-209 (557)
159 PF04849 HAP1_N: HAP1 N-termin 25.5 1.3E+02 0.0029 30.0 5.2 45 143-187 255-306 (306)
160 PF08317 Spc7: Spc7 kinetochor 25.4 2.8E+02 0.006 27.3 7.5 16 204-219 254-269 (325)
161 smart00338 BRLZ basic region l 25.2 2.9E+02 0.0062 20.5 6.0 32 153-184 29-60 (65)
162 PRK00295 hypothetical protein; 25.1 3.2E+02 0.007 21.1 7.3 40 150-189 5-44 (68)
163 PRK02224 chromosome segregatio 25.1 9.5E+02 0.021 26.4 14.0 9 270-278 458-466 (880)
164 TIGR03752 conj_TIGR03752 integ 25.0 8.6E+02 0.019 25.9 13.1 43 142-188 55-97 (472)
165 PRK00736 hypothetical protein; 25.0 3.3E+02 0.0071 21.0 8.1 43 150-192 5-47 (68)
166 PRK00888 ftsB cell division pr 24.8 2.1E+02 0.0045 23.9 5.5 32 147-178 31-62 (105)
167 KOG3647 Predicted coiled-coil 24.7 2.8E+02 0.006 27.8 7.1 31 159-189 128-158 (338)
168 PRK07353 F0F1 ATP synthase sub 24.7 4.2E+02 0.0092 22.2 11.6 70 145-214 52-122 (140)
169 TIGR02894 DNA_bind_RsfA transc 24.5 3.1E+02 0.0068 25.0 7.0 10 143-152 80-89 (161)
170 PF02388 FemAB: FemAB family; 24.4 4.5E+02 0.0097 26.6 8.9 35 241-276 329-365 (406)
171 PF14584 DUF4446: Protein of u 24.4 2.5E+02 0.0054 25.1 6.3 54 242-298 64-117 (151)
172 PF10779 XhlA: Haemolysin XhlA 24.4 3.3E+02 0.0071 20.9 8.1 41 148-188 4-44 (71)
173 PF08317 Spc7: Spc7 kinetochor 24.2 4.3E+02 0.0093 26.0 8.5 12 260-271 291-302 (325)
174 PRK14153 heat shock protein Gr 24.0 5.9E+02 0.013 23.7 9.4 43 146-191 43-85 (194)
175 PF05470 eIF-3c_N: Eukaryotic 23.9 5.6E+02 0.012 27.8 9.9 105 150-261 27-131 (595)
176 PF13815 Dzip-like_N: Iguana/D 23.6 3.3E+02 0.0071 22.8 6.6 35 162-196 78-112 (118)
177 TIGR02977 phageshock_pspA phag 23.6 5.9E+02 0.013 23.5 10.3 36 151-186 100-135 (219)
178 PRK13729 conjugal transfer pil 23.5 2.3E+02 0.0049 30.1 6.6 19 152-170 71-89 (475)
179 TIGR03545 conserved hypothetic 23.5 3.9E+02 0.0085 28.7 8.6 21 241-261 291-311 (555)
180 PF04102 SlyX: SlyX; InterPro 23.3 3.5E+02 0.0075 20.8 6.7 44 146-189 7-50 (69)
181 PRK14149 heat shock protein Gr 23.2 6.1E+02 0.013 23.6 10.5 47 146-195 46-92 (191)
182 PRK14148 heat shock protein Gr 23.2 5.8E+02 0.013 23.8 8.7 47 147-193 44-94 (195)
183 PRK04325 hypothetical protein; 23.2 3.7E+02 0.0081 21.1 7.3 44 145-188 11-54 (74)
184 PF06657 Cep57_MT_bd: Centroso 23.1 3.7E+02 0.0079 21.4 6.4 29 146-174 13-41 (79)
185 PF13094 CENP-Q: CENP-Q, a CEN 23.0 5.1E+02 0.011 22.6 8.2 50 147-196 31-80 (160)
186 PF10211 Ax_dynein_light: Axon 23.0 5.9E+02 0.013 23.3 8.8 28 147-174 124-151 (189)
187 PRK13455 F0F1 ATP synthase sub 22.8 5.5E+02 0.012 22.9 12.0 66 144-209 73-150 (184)
188 CHL00019 atpF ATP synthase CF0 22.7 5.6E+02 0.012 22.9 12.0 65 149-213 75-140 (184)
189 PRK03947 prefoldin subunit alp 22.6 4.7E+02 0.01 22.1 7.5 46 142-190 89-134 (140)
190 PF10186 Atg14: UV radiation r 22.4 6.3E+02 0.014 23.4 14.7 25 242-266 137-162 (302)
191 PF09304 Cortex-I_coil: Cortex 22.3 5E+02 0.011 22.3 7.5 45 143-187 30-74 (107)
192 PF06698 DUF1192: Protein of u 22.2 3.6E+02 0.0078 20.7 5.9 27 141-167 19-45 (59)
193 PRK08475 F0F1 ATP synthase sub 22.0 5.6E+02 0.012 22.7 12.0 45 166-210 76-120 (167)
194 cd07596 BAR_SNX The Bin/Amphip 21.8 5.4E+02 0.012 22.4 10.8 35 163-197 151-185 (218)
195 COG5200 LUC7 U1 snRNP componen 21.7 4.5E+02 0.0098 25.4 7.7 26 241-266 210-235 (258)
196 PHA02109 hypothetical protein 21.4 2.7E+02 0.0058 26.2 6.0 32 149-180 192-223 (233)
197 TIGR03185 DNA_S_dndD DNA sulfu 21.2 1E+03 0.023 25.5 14.0 11 250-260 507-517 (650)
198 cd00890 Prefoldin Prefoldin is 21.2 4.2E+02 0.0092 21.6 6.8 46 141-189 81-126 (129)
199 PF12240 Angiomotin_C: Angiomo 21.2 1.9E+02 0.0041 27.4 5.1 33 143-175 57-89 (205)
200 KOG0981 DNA topoisomerase I [R 21.1 3.3E+02 0.0072 29.9 7.4 44 155-198 641-696 (759)
201 PRK04406 hypothetical protein; 21.1 4.2E+02 0.0091 20.9 7.3 43 145-187 13-55 (75)
202 PRK01558 V-type ATP synthase s 21.0 6.4E+02 0.014 23.0 10.2 38 173-210 50-87 (198)
203 PF03114 BAR: BAR domain; Int 20.9 5.5E+02 0.012 22.2 14.0 27 163-189 130-156 (229)
204 PRK00295 hypothetical protein; 20.9 4E+02 0.0086 20.6 8.1 45 145-189 7-51 (68)
205 PF05600 DUF773: Protein of un 20.6 5.5E+02 0.012 27.2 8.9 74 143-217 124-197 (507)
206 PF05546 She9_MDM33: She9 / Md 20.4 3.6E+02 0.0077 25.6 6.7 35 145-179 34-68 (207)
207 PF14388 DUF4419: Domain of un 20.3 2E+02 0.0043 28.3 5.3 40 175-218 142-183 (299)
208 PTZ00446 vacuolar sorting prot 20.2 7.1E+02 0.015 23.2 12.4 56 199-268 79-134 (191)
209 PF05667 DUF812: Protein of un 20.1 5.5E+02 0.012 27.9 8.9 80 126-208 311-390 (594)
No 1
>PRK14143 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.7e-47 Score=353.80 Aligned_cols=168 Identities=27% Similarity=0.391 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccC
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 227 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski 227 (331)
..+.+..++++|+.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+++..
T Consensus 65 ~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~---- 140 (238)
T PRK14143 65 NAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE---- 140 (238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc----
Confidence 3345556667788889999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCe
Q 020069 228 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYER 307 (331)
Q Consensus 228 ~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dR 307 (331)
. .....|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+|+||
T Consensus 141 ---~------~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~R 211 (238)
T PRK14143 141 ---G------EEAQALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGR 211 (238)
T ss_pred ---c------hhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCE
Confidence 1 1236799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEeecCCCCcccccc
Q 020069 308 VIRPAEVGVTQAVENDRAENN 328 (331)
Q Consensus 308 VLRPA~VvVsK~~~~~~~~~~ 328 (331)
|||||+|+|++++....++..
T Consensus 212 VLRpA~V~Vsk~~~~~~~~~~ 232 (238)
T PRK14143 212 VLRHAMVKVSMGPGPSSPAEE 232 (238)
T ss_pred ecccceEEECCCCCCCCCCCc
Confidence 999999999998775555433
No 2
>PRK14148 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.6e-47 Score=344.24 Aligned_cols=157 Identities=34% Similarity=0.549 Sum_probs=144.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCC
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 228 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~ 228 (331)
.+.+..+++.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+..
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~----- 113 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVKL----- 113 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-----
Confidence 345566667788899999999999999999999999999999999999999999999999999999999864320
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCee
Q 020069 229 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERV 308 (331)
Q Consensus 229 ~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRV 308 (331)
....+|++||+||+++|.++|+++||++|+|+|++|||++|+||++++++++++|+|++|+|+||+|+|||
T Consensus 114 ---------~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRV 184 (195)
T PRK14148 114 ---------EEAIAMKEGIELTAKMLVDILKKNGVEELDPKGEKFDPNLHEAMAMIPNPEFEDNTIFDVFQKGYMLNGRI 184 (195)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEe
Confidence 12468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeEEEeecC
Q 020069 309 IRPAEVGVTQA 319 (331)
Q Consensus 309 LRPA~VvVsK~ 319 (331)
||||+|+|++.
T Consensus 185 LRpA~V~Vak~ 195 (195)
T PRK14148 185 VRAAKVVIVKN 195 (195)
T ss_pred eeccEEEeCCC
Confidence 99999999873
No 3
>PRK14161 heat shock protein GrpE; Provisional
Probab=100.00 E-value=6.5e-47 Score=339.66 Aligned_cols=160 Identities=32% Similarity=0.574 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCC
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID 228 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~ 228 (331)
.+-++..+++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 18 ~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~----- 92 (178)
T PRK14161 18 EEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNVSDNLSRALAHKPAN----- 92 (178)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcCccc-----
Confidence 456677778889999999999999999999999999999999999999999999999999999999999865321
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCe
Q 020069 229 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYER 307 (331)
Q Consensus 229 ~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp-vGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dR 307 (331)
. ...+.++++||+||+++|.++|+++||++|+| +|++|||++||||+++++++.++|||++|+|+||+|+||
T Consensus 93 --~-----~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~v~q~GY~l~dR 165 (178)
T PRK14161 93 --S-----DVEVTNIIAGVQMTKDELDKVFHKHHIEEIKPEIGSMFDYNLHNAISQIEHPDHAPNSIITLMQSGYKIRDR 165 (178)
T ss_pred --c-----chhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeeCCCCCCcCEEEEEeeCCcEeCCE
Confidence 0 12356899999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred eeeeeEEEeecCC
Q 020069 308 VIRPAEVGVTQAV 320 (331)
Q Consensus 308 VLRPA~VvVsK~~ 320 (331)
|||||+|+|+++|
T Consensus 166 VLRpA~V~Vak~~ 178 (178)
T PRK14161 166 LLRPATVQVVKKP 178 (178)
T ss_pred eecCceEEeCCCC
Confidence 9999999999864
No 4
>PRK14141 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.6e-46 Score=344.42 Aligned_cols=157 Identities=41% Similarity=0.677 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020069 158 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 237 (331)
Q Consensus 158 ~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~ 237 (331)
+|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.+ .+ ...+
T Consensus 39 ~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerAl~~~~~~-------~~-~~~~ 110 (209)
T PRK14141 39 PLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRALDAIPAE-------AR-AAAD 110 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhccccc-------cc-cccc
Confidence 345567788899999999999999999999999999999999999999999999999999875431 00 0112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEee
Q 020069 238 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 317 (331)
Q Consensus 238 ~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvVs 317 (331)
+.+++|++||+||+++|.++|+++||++|+++|++|||++||||++++++++++|||++|+|+||+|+|||||||+|+|+
T Consensus 111 ~~~~~l~eGv~mi~k~l~~vLek~GV~~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V~Vs 190 (209)
T PRK14141 111 AGLKALIEGVEMTERAMLNALERHGVKKLDPEGQKFDPNFHQAMFEVPNPDVPNNTVVQVVQAGYTIGERVLRPAMVGVA 190 (209)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeecccEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 020069 318 QAVEN 322 (331)
Q Consensus 318 K~~~~ 322 (331)
++++.
T Consensus 191 k~~~~ 195 (209)
T PRK14141 191 KGGPK 195 (209)
T ss_pred CCCCC
Confidence 96643
No 5
>PRK14153 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.3e-46 Score=341.56 Aligned_cols=156 Identities=34% Similarity=0.594 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCC
Q 020069 153 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 232 (331)
Q Consensus 153 ~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d 232 (331)
......++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.+
T Consensus 36 ~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~~--------- 106 (194)
T PRK14153 36 STADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESARTA--------- 106 (194)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc---------
Confidence 34445567788899999999999999999999999999999999999999999999999999999864321
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeee
Q 020069 233 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 312 (331)
Q Consensus 233 ~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA 312 (331)
..+.+|++||+||+++|.++|+++||++|+|+|++|||++|+||+++++++.++|||++|+|+||+|+|||||||
T Consensus 107 -----~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA 181 (194)
T PRK14153 107 -----EDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEEFDPHRHEAMMHVETSEVPDNTIVDVCKPGYALNSKVIRPA 181 (194)
T ss_pred -----chHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChhHhceeeeeCCCCCCcCEEEEEeeCCcEeCCEEeeCc
Confidence 225789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 020069 313 EVGVTQAVEN 322 (331)
Q Consensus 313 ~VvVsK~~~~ 322 (331)
+|+|+++++.
T Consensus 182 ~V~Vak~~~e 191 (194)
T PRK14153 182 MVSVARNPDE 191 (194)
T ss_pred EEEECCCCcc
Confidence 9999997654
No 6
>PRK14155 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.7e-46 Score=344.05 Aligned_cols=156 Identities=40% Similarity=0.647 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020069 158 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 237 (331)
Q Consensus 158 ~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~ 237 (331)
+|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...+ ..+
T Consensus 21 ~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~-----------~~~ 89 (208)
T PRK14155 21 EIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKD-----------SAD 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhccccc-----------ccc
Confidence 355577888899999999999999999999999999999999999999999999999999875421 012
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEe
Q 020069 238 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 316 (331)
Q Consensus 238 ~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp-vGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvV 316 (331)
+.+++|++||+||+++|.++|+++||++|+| +|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+|
T Consensus 90 ~~~~~i~~Gvemi~k~~~~~L~k~GV~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 169 (208)
T PRK14155 90 PAVKNFIIGVEMTEKELLGAFERNGLKKIDPAKGDKFDPHLHQAMMEQPSTEVAAGGVLQVMQAGYELMGRLVRPAMVAV 169 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCceecCCCCCCCChhHhceeeeecCCCCCcCeEEEEeeCCeEeCCEeeccceEEE
Confidence 3467899999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcc
Q 020069 317 TQAVENDR 324 (331)
Q Consensus 317 sK~~~~~~ 324 (331)
+++++...
T Consensus 170 ak~~~~~~ 177 (208)
T PRK14155 170 AAKGSTGP 177 (208)
T ss_pred CCCCCccc
Confidence 99765443
No 7
>PRK14147 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-46 Score=335.15 Aligned_cols=146 Identities=33% Similarity=0.508 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020069 158 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 237 (331)
Q Consensus 158 ~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~ 237 (331)
.|+.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerAl~~~~~--------------- 90 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAGLTAAGT--------------- 90 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccc---------------
Confidence 35567788899999999999999999999999999999999999999999999999999975321
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEee
Q 020069 238 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVT 317 (331)
Q Consensus 238 ~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvVs 317 (331)
...+|++||+||+++|.++|+++||++|+++|++|||++||||+++++++.++|+|++|+|+||+|+|||||||+|+|+
T Consensus 91 -~~~~l~~Gv~mi~k~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~RvLRpA~V~Va 169 (172)
T PRK14147 91 -EPSPLRDGLELTYKQLLKVAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPGHVVQVFQKGYLLNERLLRPALVVVA 169 (172)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChHHhceeeeecCCCCCcCEEEEEeeCCcEeCCEeccCceEEeC
Confidence 1357999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 020069 318 QA 319 (331)
Q Consensus 318 K~ 319 (331)
++
T Consensus 170 k~ 171 (172)
T PRK14147 170 KQ 171 (172)
T ss_pred CC
Confidence 75
No 8
>PRK14151 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2e-46 Score=335.93 Aligned_cols=149 Identities=34% Similarity=0.568 Sum_probs=138.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 236 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~ 236 (331)
++++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~-------------~ 93 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSA-------------D 93 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------c
Confidence 345567788899999999999999999999999999999999999999999999999999986431 0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEe
Q 020069 237 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 316 (331)
Q Consensus 237 ~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvV 316 (331)
+..+++|++||+||+++|.++|+++||++|+++|++|||++||||+++++++.++|||+.|+|+||+|||||||||+|+|
T Consensus 94 ~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtI~~v~qkGY~l~dRvLRpA~V~V 173 (176)
T PRK14151 94 DEAIKPMREGVELTLKMFQDTLKRYQLEAVDPHGEPFNPEHHQAMAMQESADVEPNSVLKVFQKGYLLNGRLLRPAMVVV 173 (176)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhcceeeCCCCCCcCeEEEEeeCCcEECCEEecCcEEEe
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q 020069 317 TQ 318 (331)
Q Consensus 317 sK 318 (331)
++
T Consensus 174 ak 175 (176)
T PRK14151 174 SK 175 (176)
T ss_pred cC
Confidence 97
No 9
>PRK14163 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4e-46 Score=342.47 Aligned_cols=151 Identities=28% Similarity=0.419 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCC
Q 020069 154 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDT 233 (331)
Q Consensus 154 e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~ 233 (331)
.+++.|..+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~------------- 110 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHG------------- 110 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhch-------------
Confidence 3444566788889999999999999999999999999999999999999999999999999998631
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeE
Q 020069 234 AGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAE 313 (331)
Q Consensus 234 ~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~ 313 (331)
.|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|++|+|+||+|+|||||||+
T Consensus 111 --------~l~~Gv~mi~k~l~~~L~k~Gv~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RVLRPA~ 182 (214)
T PRK14163 111 --------ELVGGFKSVAESLETTVAKLGLQQFGKEGEPFDPTIHEALMHSYAPDVTETTCVAILQPGYRIGERTIRPAR 182 (214)
T ss_pred --------hHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCcCcCCEeccCce
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCccc
Q 020069 314 VGVTQAVENDRA 325 (331)
Q Consensus 314 VvVsK~~~~~~~ 325 (331)
|+|+++++..++
T Consensus 183 V~Vsk~~~~~~~ 194 (214)
T PRK14163 183 VAVAEPQPGAQT 194 (214)
T ss_pred EEECCCCCCCCC
Confidence 999998665554
No 10
>PRK14140 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5.3e-46 Score=336.92 Aligned_cols=154 Identities=38% Similarity=0.552 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCC
Q 020069 151 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 230 (331)
Q Consensus 151 ~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s 230 (331)
++.+++..+.++++++++++++|+|++|||+|||||++||++.+++||+++|+++||||+|||+||+.+.+.
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLerAl~~~~~-------- 109 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFERALQIEAD-------- 109 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--------
Confidence 444455567778899999999999999999999999999999999999999999999999999999986321
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeee
Q 020069 231 NDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 310 (331)
Q Consensus 231 ~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLR 310 (331)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||+.|+|+||+|+|||||
T Consensus 110 ------~~~~~~i~~Gv~mi~k~l~~~L~k~GV~~i~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLR 183 (191)
T PRK14140 110 ------DEQTKSLLKGVEMVHRQLLEALKKEGVEVIEAVGEQFDPNLHQAVMQDEDEDFESNEVVEELQKGYKLKDRVIR 183 (191)
T ss_pred ------cchHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCCCCCChHHhccceeeCCCCCCcCeEEEEeeCCeEeCCEEec
Confidence 12357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeec
Q 020069 311 PAEVGVTQ 318 (331)
Q Consensus 311 PA~VvVsK 318 (331)
||+|+|++
T Consensus 184 pA~V~Vak 191 (191)
T PRK14140 184 PSMVKVNQ 191 (191)
T ss_pred CcEEEeCC
Confidence 99999985
No 11
>PRK14158 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5e-46 Score=337.78 Aligned_cols=152 Identities=38% Similarity=0.555 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCC
Q 020069 152 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 231 (331)
Q Consensus 152 v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~ 231 (331)
+..+++.+..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~--------- 112 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHADE--------- 112 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccCc---------
Confidence 44555667778899999999999999999999999999999999999999999999999999999975321
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeee
Q 020069 232 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 310 (331)
Q Consensus 232 d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp-vGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLR 310 (331)
..+++|++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|||++|+|+||+|+|||||
T Consensus 113 ------~~~~~i~~Gv~mi~k~l~~vLek~Gv~~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLR 186 (194)
T PRK14158 113 ------ESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPFDPAYHQAMCQVESAEQEPNTVVAVFQKGYLLNERLLR 186 (194)
T ss_pred ------chHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChHHhhhheeecCCCCCcCEEEEEeeCCcEeCCEEee
Confidence 1247899999999999999999999999998 799999999999999999999999999999999999999999
Q ss_pred eeEEEeec
Q 020069 311 PAEVGVTQ 318 (331)
Q Consensus 311 PA~VvVsK 318 (331)
||+|+|+|
T Consensus 187 pA~V~VsK 194 (194)
T PRK14158 187 PAMVSVAT 194 (194)
T ss_pred cceeEeCC
Confidence 99999985
No 12
>PRK14139 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.3e-46 Score=334.23 Aligned_cols=146 Identities=41% Similarity=0.607 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 236 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~ 236 (331)
.+++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+..
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~--------------- 103 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSLEAALADES--------------- 103 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc---------------
Confidence 34566788889999999999999999999999999999999999999999999999999996421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEe
Q 020069 237 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 316 (331)
Q Consensus 237 ~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvV 316 (331)
..+.+|++||+||+++|.++|+++||++|+++|++|||++||||+++++ +.++|||++|+|+||+|+|||||||+|+|
T Consensus 104 -~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G~~FDP~~HEAv~~~~~-~~~~gtVi~V~qkGY~l~dRVLRPA~V~V 181 (185)
T PRK14139 104 -GDLEKLREGVELTLKQLTSAFEKGRVVEINPVGEKFDPHQHQAISMVPA-EQEPNTVVAVLQKGYTIADRVLRPALVTV 181 (185)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHCCCceeCCCCCCCChHHhheeeeecC-CCCcCEEEEEeeCCcEeCCEeccCceEEe
Confidence 1246899999999999999999999999999999999999999999998 67999999999999999999999999999
Q ss_pred ecC
Q 020069 317 TQA 319 (331)
Q Consensus 317 sK~ 319 (331)
++.
T Consensus 182 ak~ 184 (185)
T PRK14139 182 AAP 184 (185)
T ss_pred CCC
Confidence 984
No 13
>PRK14160 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9e-46 Score=339.75 Aligned_cols=160 Identities=32% Similarity=0.459 Sum_probs=149.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhh
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVV 220 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~ 220 (331)
.+....++.+.+..+++.++.+++++++++++|+|++|||+|||||+.||++.+++||+++|+++||||+|||+||+.+.
T Consensus 52 ~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~ 131 (211)
T PRK14160 52 NEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVE 131 (211)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcc
Confidence 44556677888888999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred hhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeec
Q 020069 221 KENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKS 300 (331)
Q Consensus 221 ~~~~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqk 300 (331)
. ....|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|||++|+|+
T Consensus 132 ~-----------------~~~~l~~Gv~mi~kql~~vL~k~GVe~I~~~G-~FDP~~HEAv~~~~~~e~~~gtVveV~qk 193 (211)
T PRK14160 132 G-----------------SVEDLKKGIEMTVKQFKTSLEKLGVEEISTEG-EFDPNLHNAVMHVEDENYGENEIVEVFQK 193 (211)
T ss_pred c-----------------chhHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhceeeeeCCCCCCcCeEEEEeeC
Confidence 1 12479999999999999999999999999999 89999999999999999999999999999
Q ss_pred ceeeCCeeeeeeEEEeec
Q 020069 301 GYTLYERVIRPAEVGVTQ 318 (331)
Q Consensus 301 GY~L~dRVLRPA~VvVsK 318 (331)
||+|||||||||+|+|++
T Consensus 194 GY~l~dRVLRpA~V~Va~ 211 (211)
T PRK14160 194 GYKRGDKVIRYSMVKVAN 211 (211)
T ss_pred CcEeCCEeeecceEEeCC
Confidence 999999999999999984
No 14
>PRK14162 heat shock protein GrpE; Provisional
Probab=100.00 E-value=9e-46 Score=336.13 Aligned_cols=149 Identities=34% Similarity=0.479 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020069 156 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 235 (331)
Q Consensus 156 ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~ 235 (331)
+..++.+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+.+.
T Consensus 45 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~------------- 111 (194)
T PRK14162 45 EKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERALAVKAD------------- 111 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------
Confidence 3445667888899999999999999999999999999999999999999999999999999986432
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCC-CCCCCceeEEeecceeeCCeeeeeeEE
Q 020069 236 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGYTLYERVIRPAEV 314 (331)
Q Consensus 236 ~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~-d~~~gTVveVvqkGY~L~dRVLRPA~V 314 (331)
+..+++|++||+||+++|.++|.++||++|+++|++|||++|+||++++++ +.++|||++|+|+||+|||||||||+|
T Consensus 112 -~~~~~~l~~Gvemi~k~l~~vL~~~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V 190 (194)
T PRK14162 112 -DEAAKQLKKGVQMTLDHLVKALKDHGVTEIKADGEKFDPTLHQAVQTVAAENDDQKDHVVQVLQKGYQYKDRTLRPAMV 190 (194)
T ss_pred -chhHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhhhheeecCCCCCCcCEEEEEeeCCcEeCCEeeecceE
Confidence 123478999999999999999999999999999999999999999999975 689999999999999999999999999
Q ss_pred Eeec
Q 020069 315 GVTQ 318 (331)
Q Consensus 315 vVsK 318 (331)
+|++
T Consensus 191 ~Vak 194 (194)
T PRK14162 191 VVAQ 194 (194)
T ss_pred EeCC
Confidence 9985
No 15
>PRK14145 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.2e-45 Score=335.65 Aligned_cols=150 Identities=32% Similarity=0.487 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCC
Q 020069 152 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 231 (331)
Q Consensus 152 v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~ 231 (331)
+..+.+.+..+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+..
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~~~---------- 116 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALASSG---------- 116 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccc----------
Confidence 3445556777889999999999999999999999999999999999999999999999999999997521
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeee
Q 020069 232 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 311 (331)
Q Consensus 232 d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRP 311 (331)
....|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||+.|+|+||+|+||||||
T Consensus 117 -------~~~~l~~Gv~mi~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRP 189 (196)
T PRK14145 117 -------DYNSLKEGIELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAVMQEEVEGKQPNEIIEVFQKGYYLKDKVIRP 189 (196)
T ss_pred -------cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCchhhheeeeeCCCCCCcCEEEEEeeCCcEeCCEeecc
Confidence 1357999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeec
Q 020069 312 AEVGVTQ 318 (331)
Q Consensus 312 A~VvVsK 318 (331)
|+|+|++
T Consensus 190 A~V~Vak 196 (196)
T PRK14145 190 SLVKVAK 196 (196)
T ss_pred ceEEeCC
Confidence 9999985
No 16
>PRK14150 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2e-45 Score=333.60 Aligned_cols=153 Identities=41% Similarity=0.618 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCC
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 229 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~ 229 (331)
..+.++++++..+++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 41 ~~i~~l~~~l~~~~~---~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~------- 110 (193)
T PRK14150 41 ARIAELEAQLAEAQA---EERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADK------- 110 (193)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccc-------
Confidence 444555555554443 6899999999999999999999999999999999999999999999999975421
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeee
Q 020069 230 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 309 (331)
Q Consensus 230 s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVL 309 (331)
.+..+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|+||||
T Consensus 111 ------~~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~gtI~~v~q~GY~l~drvL 184 (193)
T PRK14150 111 ------ENEALKALIEGVELTLKSLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQESEDHEPNTVMMVMQKGYTLNGRLL 184 (193)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCCHhHcceeeeeCCCCCCcCEEEEEeeCCeEeCCEEe
Confidence 01235789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeec
Q 020069 310 RPAEVGVTQ 318 (331)
Q Consensus 310 RPA~VvVsK 318 (331)
|||+|+|++
T Consensus 185 RpA~V~Vsk 193 (193)
T PRK14150 185 RPAMVMVSK 193 (193)
T ss_pred cceEEEeCC
Confidence 999999985
No 17
>PRK14146 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.8e-45 Score=338.83 Aligned_cols=153 Identities=30% Similarity=0.437 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCC
Q 020069 154 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDT 233 (331)
Q Consensus 154 e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~ 233 (331)
.++..+..+++++++++++|+|++|||+|||||+.||++.+++||+++|+++||||+|||+||+.+...
T Consensus 58 ~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerAl~~~~~----------- 126 (215)
T PRK14146 58 SLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERVGATQNQ----------- 126 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-----------
Confidence 334456678889999999999999999999999999999999999999999999999999999975421
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCC----eee
Q 020069 234 AGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYE----RVI 309 (331)
Q Consensus 234 ~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~d----RVL 309 (331)
++...+|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|+.|+|+||+|+| |||
T Consensus 127 ---~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~g~Vv~v~qkGY~l~~r~~~RvL 203 (215)
T PRK14146 127 ---SEELKPFVEGVKMILKEFYSVLEKSNVIRFDPKGEPFDPMSMEALSSEEGDQYSEETVIDVYQAGYYYKENEDKFTL 203 (215)
T ss_pred ---cchhhHHHHHHHHHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeecCCCCCcCEEEEEeeCCeEeCCccCCeec
Confidence 1234789999999999999999999999999999999999999999999999999999999999999999 699
Q ss_pred eeeEEEeecCC
Q 020069 310 RPAEVGVTQAV 320 (331)
Q Consensus 310 RPA~VvVsK~~ 320 (331)
|||+|+|++++
T Consensus 204 RpA~V~Vak~~ 214 (215)
T PRK14146 204 RPARVRIGKPK 214 (215)
T ss_pred cCceEEeCCCC
Confidence 99999999854
No 18
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=333.13 Aligned_cols=151 Identities=44% Similarity=0.690 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 236 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~ 236 (331)
.++..++.++++++++|+|++|||+|||||+++|++.+++||+++|+.+||||+|||+||+...... .+
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~-------~d---- 111 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPVIDNLERALEAAEDD-------KD---- 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cc----
Confidence 4466677888889999999999999999999999999999999999999999999999999875431 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEe
Q 020069 237 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 316 (331)
Q Consensus 237 ~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvV 316 (331)
+. ++|++||+||+++|.++|.++||++|++.|++|||++|+||++++++++++|||+.|+|+||+|||||||||+|+|
T Consensus 112 -~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRVLRpA~V~V 189 (193)
T COG0576 112 -PE-KALLEGVEMTLDQLLDALEKLGVEEIGPEGEKFDPNLHEAVQRVESEDVEPNTVVEVLQKGYKLNDRVLRPAMVKV 189 (193)
T ss_pred -hH-HHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhheeeecCCCCCCCeEEEEeecCeeeCCEeccceEEEE
Confidence 22 6899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q 020069 317 TQAV 320 (331)
Q Consensus 317 sK~~ 320 (331)
++++
T Consensus 190 ak~~ 193 (193)
T COG0576 190 AKKE 193 (193)
T ss_pred ecCC
Confidence 9864
No 19
>PRK14144 heat shock protein GrpE; Provisional
Probab=100.00 E-value=2.4e-45 Score=334.31 Aligned_cols=150 Identities=38% Similarity=0.619 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCC
Q 020069 155 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTA 234 (331)
Q Consensus 155 ~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~ 234 (331)
+++.+..+++++++++++|+|++|||+|||||+++|++++++||+++|+++||||+|||+||+.+...+ .
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~-------~--- 119 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVDSLEQALQLADKN-------S--- 119 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHccccc-------c---
Confidence 444567788999999999999999999999999999999999999999999999999999999864321 0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEE
Q 020069 235 GAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEV 314 (331)
Q Consensus 235 ~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~V 314 (331)
..+|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|+|||||||+|
T Consensus 120 -----~~~i~~Gv~mi~k~l~~~L~k~GV~~I~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~V~qkGY~l~dRVLRpA~V 194 (199)
T PRK14144 120 -----DPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTFDPQQHEAMSMQPAPGAPPNSVITVFQKGYKLSDRVIRPARV 194 (199)
T ss_pred -----hhHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEECCEEecccEE
Confidence 146899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecC
Q 020069 315 GVTQA 319 (331)
Q Consensus 315 vVsK~ 319 (331)
+|+++
T Consensus 195 ~Vskk 199 (199)
T PRK14144 195 IVSTK 199 (199)
T ss_pred EecCC
Confidence 99874
No 20
>PRK14159 heat shock protein GrpE; Provisional
Probab=100.00 E-value=1.9e-45 Score=329.68 Aligned_cols=145 Identities=34% Similarity=0.522 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 238 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~ 238 (331)
++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+.+.+ .
T Consensus 32 i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~--------------~ 97 (176)
T PRK14159 32 QNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHD--------------E 97 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------c
Confidence 45567788899999999999999999999999999999999999999999999999999864321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEeec
Q 020069 239 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 318 (331)
Q Consensus 239 ~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvVsK 318 (331)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|||++|+|+||+|+|||||||+|+|++
T Consensus 98 ~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~~~G-~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~dRVLRpA~V~Vak 176 (176)
T PRK14159 98 ISLKIKEGVQNTLDLFLKKLEKHGVALIKEEK-EFDPNLHEAMFHVDSENHQSGEVVQVLQKGYKIADRVIRPTKVSVAK 176 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHCcCEecCCCC-CCChHHhhhhheeCCCCCCcCeEEEEeeCCcEeCCEeeecceeEeCC
Confidence 23679999999999999999999999999999 69999999999999999999999999999999999999999999985
No 21
>PRK14154 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.8e-45 Score=334.23 Aligned_cols=148 Identities=32% Similarity=0.476 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCc
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGA 236 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~ 236 (331)
.+|+.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... .
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRAL~~~~~-------------~ 125 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHGLESPAS-------------E 125 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-------------c
Confidence 345567788899999999999999999999999999999999999999999999999999985421 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEE
Q 020069 237 VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 315 (331)
Q Consensus 237 ~~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp-vGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~Vv 315 (331)
++.+++|++||+||+++|.++|+++||++|++ +|++|||++||||+++++++.++|||++|+|+||+|+|||||||+|+
T Consensus 126 ~~~~~~l~eGvemi~k~l~~vL~k~GVe~I~~~~G~~FDP~~HEAv~~~~~~~~~~gtVveV~qkGY~l~dRVLRPA~V~ 205 (208)
T PRK14154 126 DPQVKSMRDGMSLTLDLLHNTLAKHGVQVINPNPGDPFDPALHEAMSVQAVPDAKPDTIIQVLQKGYQLNGRVLRAARVI 205 (208)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCCEEecCCCCCCCChhHhheeeeeCCCCCCcCEEEEEeeCCcEeCCEEecceEEE
Confidence 13457899999999999999999999999998 69999999999999999999999999999999999999999999999
Q ss_pred ee
Q 020069 316 VT 317 (331)
Q Consensus 316 Vs 317 (331)
|+
T Consensus 206 Va 207 (208)
T PRK14154 206 VA 207 (208)
T ss_pred eC
Confidence 97
No 22
>PRK10325 heat shock protein GrpE; Provisional
Probab=100.00 E-value=5e-45 Score=331.93 Aligned_cols=139 Identities=40% Similarity=0.619 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHH
Q 020069 169 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVE 248 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eGVe 248 (331)
++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.... ...+++|++||+
T Consensus 58 ~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~DnlerAl~~~~~~-------------~~~~~~l~~Gv~ 124 (197)
T PRK10325 58 ERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA-------------NPDMSAMVEGIE 124 (197)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc-------------chhHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999864210 123578999999
Q ss_pred HHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEeecCC
Q 020069 249 MTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAV 320 (331)
Q Consensus 249 mi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvVsK~~ 320 (331)
||+++|.++|+++||++|+++|++|||++|+||+++++++.++|+|+.|+|+||+|+|||||||+|+|++++
T Consensus 125 m~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HEAv~~~~~~~~~~~~Vv~v~qkGY~l~drvlRpA~V~Vsk~~ 196 (197)
T PRK10325 125 LTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK 196 (197)
T ss_pred HHHHHHHHHHHHCcCeeeCCCCCCCChhHhceeeeeCCCCCCcCeEEEEeeCCcEeCCEeccCceEEeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999854
No 23
>PRK14149 heat shock protein GrpE; Provisional
Probab=100.00 E-value=7.4e-45 Score=329.38 Aligned_cols=146 Identities=34% Similarity=0.497 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchh
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 238 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~ 238 (331)
++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...+ .
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~~--------------~ 110 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKSAAEV--------------D 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccccc--------------c
Confidence 45567788899999999999999999999999999999999999999999999999999864321 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEeec
Q 020069 239 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 318 (331)
Q Consensus 239 ~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvVsK 318 (331)
...+|++||+||+++|.++|+++||++|++.| +|||++|+||+++++++.++|||+.|+|+||+|+|||||||+|+|++
T Consensus 111 ~~~~l~~Gv~mi~k~l~~vL~k~GV~~I~~~G-~FDP~~HEAv~~v~~~~~~~gtVv~V~QkGY~l~dRVLRPA~V~Vak 189 (191)
T PRK14149 111 KESALTKGLELTMEKLHEVLARHGIEGIECLE-EFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAK 189 (191)
T ss_pred chHHHHHHHHHHHHHHHHHHHHCCCEEeCCCC-CCChHHhheeeeecCCCCCcCEEEEEeeCCcEeCCEEeeccEEEeCC
Confidence 23679999999999999999999999999999 59999999999999999999999999999999999999999999998
Q ss_pred C
Q 020069 319 A 319 (331)
Q Consensus 319 ~ 319 (331)
+
T Consensus 190 ~ 190 (191)
T PRK14149 190 N 190 (191)
T ss_pred C
Confidence 3
No 24
>PRK14157 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8.1e-44 Score=329.46 Aligned_cols=143 Identities=30% Similarity=0.477 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020069 156 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 235 (331)
Q Consensus 156 ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~ 235 (331)
+..|..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+.
T Consensus 83 ~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRAl~~~--------------- 147 (227)
T PRK14157 83 LTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRIREHS--------------- 147 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhcc---------------
Confidence 33455677888999999999999999999999999999999999999999999999999999742
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEE
Q 020069 236 AVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG 315 (331)
Q Consensus 236 ~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~Vv 315 (331)
.+.+||+||+++|.++|+++||++|+++|++|||++||||++++++++++|||++|+|+||+|+|||||||+|+
T Consensus 148 ------~~~~~~~~i~k~l~~vL~k~GVe~I~~~Ge~FDP~~HEAV~~~~~~~~~~gtVi~V~QkGY~l~dRVLRPA~V~ 221 (227)
T PRK14157 148 ------EMDDSFKAVAAKIDKAFEKFGVEKFGEKGEDFDPTKHDAILHKPDPDAEKETVDTVVEAGYRIGDRVIRAARVV 221 (227)
T ss_pred ------ccchHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCcCEEEEEeeCCceeCCEeccCceEE
Confidence 13468899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 020069 316 VTQA 319 (331)
Q Consensus 316 VsK~ 319 (331)
|+++
T Consensus 222 Vak~ 225 (227)
T PRK14157 222 VASP 225 (227)
T ss_pred eCCC
Confidence 9983
No 25
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-43 Score=325.46 Aligned_cols=173 Identities=55% Similarity=0.787 Sum_probs=151.8
Q ss_pred CCHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 020069 143 LSRDD-LVKLLKEREELLMA--KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 219 (331)
Q Consensus 143 ls~de-L~k~v~e~ee~L~~--~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~ 219 (331)
++.++ +...++++.++.+. ++++..+|+|+|+|..||++|+|+|+.|..++++.||+|+|+++||.|.|+|++|.++
T Consensus 60 ~~~~~~l~~~~ae~~~l~~~~k~~~e~~eLkdk~~rs~Ad~eNlr~R~~r~~edak~FaiQ~f~kdLleVaD~Le~a~~~ 139 (236)
T KOG3003|consen 60 LAPDDKLGPSLAEKALLEKVLKLEKEEQELKDKYLRSLAECENLRDRTIRDVEDAKKFAIQSFCKDLLEVADNLEKATEC 139 (236)
T ss_pred hcchhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444 55555444444433 4555699999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEee
Q 020069 220 VKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLK 299 (331)
Q Consensus 220 ~~~~~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvq 299 (331)
+++.+.+.+ .++.++.+++|+.||+++|.++|.+||+++++|+|++||||.||||+++|+..+++|||..|.+
T Consensus 140 v~ee~~~~d-------~~~~L~~l~eGl~mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k 212 (236)
T KOG3003|consen 140 VKEESEKED-------QKKDLKDLFEGLSMTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTK 212 (236)
T ss_pred cchhhcccc-------cchHHHHHHhHHHHHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEec
Confidence 987533222 3467899999999999999999999999999999999999999999999998899999999999
Q ss_pred cceeeCCeeeeeeEEEeecCCCC
Q 020069 300 SGYTLYERVIRPAEVGVTQAVEN 322 (331)
Q Consensus 300 kGY~L~dRVLRPA~VvVsK~~~~ 322 (331)
.||+||||+||||+|+|++++++
T Consensus 213 ~Gy~L~~R~IRPA~VgV~~~~~~ 235 (236)
T KOG3003|consen 213 KGYKLNGRVIRPAMVGVVKGGEN 235 (236)
T ss_pred cCcccCCeeechhheeeecCCCC
Confidence 99999999999999999998865
No 26
>PRK14156 heat shock protein GrpE; Provisional
Probab=100.00 E-value=8e-43 Score=312.95 Aligned_cols=154 Identities=34% Similarity=0.502 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhc
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENF 224 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ 224 (331)
.++.+..++. ..+|+.+++++++++++|+|++|||+|||||+++|++++++||.++|+++||||+|||+||+.+...
T Consensus 23 ~~~~~~~~~~-~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~~-- 99 (177)
T PRK14156 23 VEEVVEETPE-KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVEGL-- 99 (177)
T ss_pred HHHHHhhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCccc--
Confidence 3344443333 4456778899999999999999999999999999999999999999999999999999999975321
Q ss_pred ccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCC-CCCCCceeEEeeccee
Q 020069 225 LKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDN-SKPPGTVAHVLKSGYT 303 (331)
Q Consensus 225 ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~-d~~~gTVveVvqkGY~ 303 (331)
..+|.+||+||+++|.++|+++||++|++. +|||++|+||++++++ ++++|||++|+|+||+
T Consensus 100 ---------------~~~l~~Gv~mi~k~l~~~L~~~GV~~i~~~--~FDP~~HEAv~~~~~~~~~~~gtVv~V~qkGY~ 162 (177)
T PRK14156 100 ---------------TDDVKKGLEMVQESLIQALKEEGVEEVAVD--SFDHNLHMAVQTLPADDEHPADSIAQVFQKGYK 162 (177)
T ss_pred ---------------chhHHHHHHHHHHHHHHHHHHCCCeecCCC--CCChhHhhcceeecCCCCCCcCEEEEEeeCCcE
Confidence 136899999999999999999999999985 9999999999999864 5899999999999999
Q ss_pred eCCeeeeeeEEEeec
Q 020069 304 LYERVIRPAEVGVTQ 318 (331)
Q Consensus 304 L~dRVLRPA~VvVsK 318 (331)
|||||||||+|+|++
T Consensus 163 l~dRVLRpA~V~Va~ 177 (177)
T PRK14156 163 LHERLLRPAMVVVYN 177 (177)
T ss_pred eCCEEeecceeEeCC
Confidence 999999999999984
No 27
>PRK14142 heat shock protein GrpE; Provisional
Probab=100.00 E-value=4.2e-42 Score=317.02 Aligned_cols=142 Identities=25% Similarity=0.392 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHH
Q 020069 163 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKS 242 (331)
Q Consensus 163 ~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~ 242 (331)
.+++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+... +
T Consensus 46 ~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDnLERAL~~~~~---------~---------- 106 (223)
T PRK14142 46 EDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDDLERARKHGDL---------E---------- 106 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHhcccc---------c----------
Confidence 456778899999999999999999999999999999999999999999999999975321 0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCC-CCceeEEeecceeeCCeeeeeeEEEeecCCC
Q 020069 243 LLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKP-PGTVAHVLKSGYTLYERVIRPAEVGVTQAVE 321 (331)
Q Consensus 243 l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~-~gTVveVvqkGY~L~dRVLRPA~VvVsK~~~ 321 (331)
..+++||+++|.++|+++||++|+++|++|||++||||+++++++.+ .|+|++|+|+||+|+|||||||+|+|++.+-
T Consensus 107 -~~~v~~I~kqL~~iLek~GVe~I~~~Ge~FDP~~HEAv~~ve~~e~~~~~tVveV~QkGYkL~dRVLRPA~V~Vsk~~~ 185 (223)
T PRK14142 107 -SGPLKSVADKLDSALTGLGLVAFGAEGEDFDPVLHEAVQHEGDGGQGSKPVIGTVMRQGYQLGEQVLRHALVGVVDTVV 185 (223)
T ss_pred -cHHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhhhceeeeecCCCCCCCCEEEEEecCCcEeCCEeccCceEEECCCCC
Confidence 13578999999999999999999999999999999999999988764 6799999999999999999999999999775
Q ss_pred Ccc
Q 020069 322 NDR 324 (331)
Q Consensus 322 ~~~ 324 (331)
...
T Consensus 186 ~~~ 188 (223)
T PRK14142 186 VDA 188 (223)
T ss_pred CCc
Confidence 444
No 28
>PRK14164 heat shock protein GrpE; Provisional
Probab=100.00 E-value=3.9e-41 Score=310.46 Aligned_cols=139 Identities=28% Similarity=0.385 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCch
Q 020069 158 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 237 (331)
Q Consensus 158 ~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~ 237 (331)
.+..+++++++++++|+|++|||+|||||++||++++++|++++|+++||||+|||+||+.+..
T Consensus 78 ~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~---------------- 141 (218)
T PRK14164 78 EASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDLDLAEQHGD---------------- 141 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhccc----------------
Confidence 4566788899999999999999999999999999999999999999999999999999997421
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEe
Q 020069 238 PLLKSLLEG-VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 316 (331)
Q Consensus 238 ~~lk~l~eG-Vemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvV 316 (331)
+.+| ++||+++|.++|+++||++|+++|++|||++||||+++++++ .++|+.|+|+||+|||||||||+|+|
T Consensus 142 -----~~~g~l~~i~~~l~~vL~k~Gve~I~~~Ge~FDP~~HEAV~~~~~~~--~~~V~~V~qkGY~l~dRVLRPA~V~V 214 (218)
T PRK14164 142 -----LNEGPLKAFSDKLTNVLAGLKVEKFGEEGDAFDPEIHEAVQDLSSGD--EKVLGTVLRKGYRMGDRVLRTAMVII 214 (218)
T ss_pred -----ccccHHHHHHHHHHHHHHHCCCEEeCCCCCCCChhHhheeeeecCCC--CCEeeEEeeCCcEECCEeccCceEEe
Confidence 1233 789999999999999999999999999999999999998764 58999999999999999999999999
Q ss_pred ecC
Q 020069 317 TQA 319 (331)
Q Consensus 317 sK~ 319 (331)
++.
T Consensus 215 ak~ 217 (218)
T PRK14164 215 ADP 217 (218)
T ss_pred CCC
Confidence 973
No 29
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=100.00 E-value=6.9e-40 Score=280.89 Aligned_cols=136 Identities=53% Similarity=0.806 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHH
Q 020069 167 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEG 246 (331)
Q Consensus 167 ~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eG 246 (331)
++++++|+|++|||+|||||+.+++++++++|+++|+++||||+|+|++|+.+...+ +.++.+.+|
T Consensus 2 ~~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~le~a~~~~~~~--------------~~~~~~~~g 67 (137)
T cd00446 2 EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE--------------EELKNLVEG 67 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------------chHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999865320 245789999
Q ss_pred HHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeeeEEEe
Q 020069 247 VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGV 316 (331)
Q Consensus 247 Vemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA~VvV 316 (331)
|+||+++|.++|.++||++|++.|++|||++|+||+++++++.++|||++|+++||+++|||||||+|+|
T Consensus 68 ~~~i~~~l~~~L~~~Gv~~i~~~g~~FDp~~Heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V 137 (137)
T cd00446 68 VEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137 (137)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCCCCCCHHHheeeeeecCCCCCcCEEEEEeecCeEECCEEecccEeEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 30
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=100.00 E-value=6.2e-40 Score=286.13 Aligned_cols=152 Identities=45% Similarity=0.699 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCC
Q 020069 153 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND 232 (331)
Q Consensus 153 ~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d 232 (331)
..+++.++.++++++++++++.|+.|+|+||++|+.++.++++.++.++|+++|||++|+|++|+.+...
T Consensus 14 ~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~~~~---------- 83 (165)
T PF01025_consen 14 EELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEAAKS---------- 83 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC-SH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----------
Confidence 3334445667788899999999999999999999999999999999999999999999999999987531
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeeee
Q 020069 233 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA 312 (331)
Q Consensus 233 ~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRPA 312 (331)
.+....|.+||.|++++|.++|.++||++|+|+|++|||++|+||+++++++.++|||++|+++||+++|||||||
T Consensus 84 ----~~~~~~~~~g~~~~~~~l~~~L~~~Gv~~i~~~G~~FDp~~heav~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA 159 (165)
T PF01025_consen 84 ----NEEEESLLEGLEMILKQLEDILEKNGVEEIEPVGEPFDPNLHEAVETVPDPDKEPGTIVEVVRPGYRLGGRVLRPA 159 (165)
T ss_dssp ----HCTCHHHHHHHHHHHHHHHHHHHTTTEEEE--TSSB--TTTEEEEEEECSSSS-CTBEEEECC-EEEETTEEEE-E
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHHCCCEecCCCCCCCCHHHheeheecCcCCCCcCeEEEEEecCEEECCEEeeee
Confidence 1123589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeec
Q 020069 313 EVGVTQ 318 (331)
Q Consensus 313 ~VvVsK 318 (331)
+|+|+|
T Consensus 160 ~V~V~K 165 (165)
T PF01025_consen 160 EVVVSK 165 (165)
T ss_dssp EEEEEE
T ss_pred EEEecC
Confidence 999986
No 31
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.29 E-value=3.3 Score=34.94 Aligned_cols=70 Identities=20% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 217 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 217 (331)
+...+..+-.++..++.++.++-+.-.+++-|-+++|+|+.+............-...+-+-.|||.+..
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY 82 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLY 82 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHH
Confidence 3344444444455555666666666677777888889888776551111112222233555566666554
No 32
>PTZ00464 SNF-7-like protein; Provisional
Probab=79.73 E-value=49 Score=31.09 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKV 173 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~ 173 (331)
..|.+.+..++.+++.++.|+..+++.+
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak~~~ 48 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLKEQI 48 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555444
No 33
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=73.75 E-value=58 Score=31.55 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERA 216 (331)
+++....++.++++++.++-.+|.+.+-++.++++..+.|+++=..+. .-++..++.++.-+-+|..-
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~--s~LeE~~~~l~~ev~~L~~r 199 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVEN--SRLEEMLKKLPGEVYDLKKR 199 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhchhHHHHHHHH
Confidence 556667777777888888888899999999999999998886532221 12345555555344444433
No 34
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.60 E-value=75 Score=31.60 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=54.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHhHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK------FAIQNFAKALLDVADNLG 214 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~------~A~e~f~kdLLpVlDnLE 214 (331)
.+||..+|.-.+.+..+-|.+.++.|++++.++..+...+.+|.+-+...-..... ..+..+..++-..-+.|.
T Consensus 65 ~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~ 144 (301)
T PF06120_consen 65 KEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELA 144 (301)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999999998887554332111111 223456666666666665
Q ss_pred Hhh
Q 020069 215 RAS 217 (331)
Q Consensus 215 RAl 217 (331)
.+.
T Consensus 145 ~~~ 147 (301)
T PF06120_consen 145 VAQ 147 (301)
T ss_pred HHH
Confidence 554
No 35
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=71.31 E-value=65 Score=27.57 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 020069 169 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERA 216 (331)
....+.+...++..+.....++....+......+...+-+++..+...
T Consensus 81 ~~~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~~ 128 (158)
T PF03938_consen 81 RQQELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAKE 128 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777888888888888888888888888888877777766543
No 36
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=69.80 E-value=37 Score=31.79 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=23.2
Q ss_pred CCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 134 DSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQ 168 (331)
Q Consensus 134 ~~~~~~~~~ls~deL~k~v~e~ee~L~~~~~El~e 168 (331)
|-.+..+.+-..--|.+.+++++++|...+++...
T Consensus 87 dfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 87 DFSATEGTDWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344556667888888888888777666554
No 37
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=69.77 E-value=1.1e+02 Score=33.44 Aligned_cols=132 Identities=17% Similarity=0.094 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHhhhhhhhhc
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF-AIQNFAKALLDVADNLGRASSVVKENF 224 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~-A~e~f~kdLLpVlDnLERAl~~~~~~~ 224 (331)
-.+.+.+..+++.++.++.++.+|+..+.++.++.++++.+..+-..+.+.. -+..=+..+-.-++.|++.+.--
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~---- 493 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK---- 493 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----
Confidence 3445666677777777777888888777777777777777665554444422 22333444556667777766421
Q ss_pred ccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCC---CCCCcccCeeeeeccCC-CCCCCceeEEeec
Q 020069 225 LKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPIN---EPFDPHRHNAMFQLPDN-SKPPGTVAHVLKS 300 (331)
Q Consensus 225 ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvG---epFDPn~HEAV~~v~s~-d~~~gTVveVvqk 300 (331)
..-++++.+.|..+.+-++++.-+ .| .+..--.|+++...+.. ....|-|+-|..+
T Consensus 494 -------------------~~~ve~L~~~l~~l~k~~~lE~sG-~g~pvk~ve~~t~~~Ie~~e~~~gik~GDvi~v~~~ 553 (652)
T COG2433 494 -------------------KKRVEELERKLAELRKMRKLELSG-KGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDP 553 (652)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhhhhcC-CCcceehhhhhhHHHHHhHHHhhccccCcEEEEEcC
Confidence 123344444554444333332221 12 12333456666554432 3567777777776
Q ss_pred c
Q 020069 301 G 301 (331)
Q Consensus 301 G 301 (331)
|
T Consensus 554 s 554 (652)
T COG2433 554 S 554 (652)
T ss_pred C
Confidence 5
No 38
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=67.92 E-value=48 Score=30.58 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
+++..++.++.+++.+...+..+|+.+.+++.+|+..-...=+..|-..|...+
T Consensus 143 ~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~ 196 (216)
T cd07627 143 EKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYL 196 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888889999999999999999999999998887665555544444443
No 39
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=63.80 E-value=14 Score=31.80 Aligned_cols=69 Identities=19% Similarity=0.088 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHhhh
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI---QNFAKALLDVADNLGRASS 218 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~---e~f~kdLLpVlDnLERAl~ 218 (331)
|...+-.+-.++..+++.+.++-+.-.+++-|-+++|+|+.. ....+.+. ..-.+...+..|||.+...
T Consensus 13 le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~--~~~e~~~~~k~~~~~~~~~~~~dnL~~lY~ 84 (114)
T COG4467 13 LEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE--PTLEKTAVKKEKPAVKKKGEGYDNLARLYQ 84 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC--ccccchhhhcccccccccCCCchhHHHHHh
Confidence 334444444445566666777777778888999999999976 11111111 2334457788888887764
No 40
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.76 E-value=40 Score=28.75 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
.+...+..+-+++..++.++.++-++-.+++-|-+++|+|+.+.
T Consensus 12 ~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 12 DLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555566667777777778889999999999999874
No 41
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=62.50 E-value=12 Score=30.14 Aligned_cols=17 Identities=6% Similarity=0.257 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhCCC
Q 020069 247 VEMTEKQLGEVFKKFGV 263 (331)
Q Consensus 247 Vemi~kqL~~vL~k~GV 263 (331)
+.+|.+.+.++|.+.||
T Consensus 69 l~~~lr~i~~sLa~MGI 85 (85)
T PF14357_consen 69 LAGILRNIMDSLANMGI 85 (85)
T ss_pred HHHHHHHHHHHHHHCCC
Confidence 45678899999999997
No 42
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=62.25 E-value=61 Score=30.78 Aligned_cols=54 Identities=17% Similarity=0.309 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
.++..++.++.+++.+...+..+|+.+.+++.+|+..-...-+..|-..|...+
T Consensus 159 dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~fl 212 (234)
T cd07664 159 DKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYL 212 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566778888999999999999999999999998887666666555554443
No 43
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=61.45 E-value=1e+02 Score=27.36 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQ 168 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~e 168 (331)
+.+++.+++|...+++..+
T Consensus 71 ~~~~~~~~~L~~a~~ea~~ 89 (174)
T PRK07352 71 QALAEAQQKLAQAQQEAER 89 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=61.31 E-value=1.1e+02 Score=35.45 Aligned_cols=42 Identities=10% Similarity=0.127 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCC---CCCcccCeeeee
Q 020069 242 SLLEGVEMTEKQLGEVFKKFGVEKFDPINE---PFDPHRHNAMFQ 283 (331)
Q Consensus 242 ~l~eGVemi~kqL~~vL~k~GVe~IdpvGe---pFDPn~HEAV~~ 283 (331)
.|-.-+--++..+...-..+.-.+++|+|. --||.||-||..
T Consensus 472 ~FG~~m~~lL~~I~r~~~~f~~~P~GPlG~~Vtl~~~KWa~aIE~ 516 (1074)
T KOG0250|consen 472 AFGPNMPQLLRAIERRKRRFQTPPKGPLGKYVTLKEPKWALAIER 516 (1074)
T ss_pred hcchhhHHHHHHHHHHHhcCCCCCCCCccceeEecCcHHHHHHHH
Confidence 333334334444444445556778888885 568888888754
No 45
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=60.15 E-value=1.1e+02 Score=27.10 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMK 167 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~ 167 (331)
.++++-+.+|...+.+..
T Consensus 70 ~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 70 AILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444433333
No 46
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=59.63 E-value=1.4e+02 Score=27.65 Aligned_cols=51 Identities=24% Similarity=0.360 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 209 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpV 209 (331)
+..++.++.+++.+..++..+|+++.+++.+|+..-...-+..|=..|...
T Consensus 151 ~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~ 201 (224)
T cd07623 151 LDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKY 201 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555678888889999999999999999999999888766665555544433
No 47
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=59.44 E-value=1.1e+02 Score=26.16 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKA 205 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~-lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kd 205 (331)
..++++.+..|...+.+..++.+.. ..+.++.+..+....++.+.....|...+-..
T Consensus 55 ~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e 112 (156)
T PRK05759 55 ELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQE 112 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333221 23333444444444444444444444444333
No 48
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=58.86 E-value=2e+02 Score=28.71 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 020069 144 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEM-ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 217 (331)
Q Consensus 144 s~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEf-EN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 217 (331)
..--|+..+.+-+..|.+.+.||.+|+.++.|.+-|| |.=.-|++.++ +.+.|. +=|+.|=.|+|.+..-|
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQL--ALKEAR-kEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQL--ALKEAR-KEIKQLKQVIETMRSSL 140 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHhhh
Confidence 3344556777777788888889999999999999887 34445554433 122221 23556666777765444
No 49
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=57.63 E-value=1.7e+02 Score=28.78 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 020069 165 EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 221 (331)
Q Consensus 165 El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~ 221 (331)
|+-.+....+-+-|.+.|++|..-||.-.++-.|+..++..++=+...=.+.+..++
T Consensus 173 ELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~Ila~~gk~Ll~lld 229 (271)
T PF13805_consen 173 ELVRAEAENLVAEAQLSNIKRQKLKEAYSLKFDALIERAEKQAILAEYGKRLLELLD 229 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333334444566999999999999999999999999888866655444455443
No 50
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=55.22 E-value=1.5e+02 Score=26.62 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 181 ENVKDRTIREAENSKKFAIQNFAKAL 206 (331)
Q Consensus 181 EN~RKR~~rE~e~ak~~A~e~f~kdL 206 (331)
+.++...+.+++..+..+...+-..+
T Consensus 119 ~~~~~~a~~~ie~Ek~~a~~~l~~ei 144 (184)
T CHL00019 119 ERLENYKNETIRFEQQRAINQVRQQV 144 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 51
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=54.77 E-value=52 Score=24.18 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 144 SRDDLVKLLKEREELLMAKNEEMKQMQDKV 173 (331)
Q Consensus 144 s~deL~k~v~e~ee~L~~~~~El~elkdk~ 173 (331)
|.++|...+.+++..+..++.++.+|++..
T Consensus 1 s~eeL~~~l~~~e~~~~~k~~~v~eLe~Yi 30 (48)
T PF09457_consen 1 SREELISLLKKQEEENARKDSRVRELEDYI 30 (48)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888777777776543
No 52
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=54.73 E-value=89 Score=30.09 Aligned_cols=51 Identities=16% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA 198 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A 198 (331)
|...+.++...++.+++++..+++++.++..++.-++.+..-++..+++.+
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~ 158 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEG 158 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555556666667777777778888888888888888887777777653
No 53
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=54.48 E-value=1.6e+02 Score=32.77 Aligned_cols=10 Identities=20% Similarity=0.302 Sum_probs=6.4
Q ss_pred CCCceeEEee
Q 020069 290 PPGTVAHVLK 299 (331)
Q Consensus 290 ~~gTVveVvq 299 (331)
..|+|+++-.
T Consensus 650 ~~g~v~~i~~ 659 (782)
T PRK00409 650 QKGEVLSIPD 659 (782)
T ss_pred ceEEEEEEcC
Confidence 4577777754
No 54
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.49 E-value=2.9e+02 Score=29.00 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=30.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 177 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~ 177 (331)
.+.+..+|.+-.+.+..+++.+++|++..++++.++.
T Consensus 231 ~D~~V~~L~~~~~~L~kqie~L~qeie~~~~~~r~~~ 267 (439)
T KOG2911|consen 231 IDGSVADLIQARAKLAKQIEFLEQEIEKSKEKLRQAL 267 (439)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889988888888899999999999988876444
No 55
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=52.98 E-value=1.6e+02 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 144 SRDDLVKLLKEREELLMA----KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNF 202 (331)
Q Consensus 144 s~deL~k~v~e~ee~L~~----~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f 202 (331)
+.|||...+---.-+|+. .++|+...+ -..+.+.|+-+++.+|+++++.....-+
T Consensus 2 s~EELRq~Ll~TTlELE~~k~~A~EElRk~e----eqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 2 SMEELRQKLLYTTLELEATKMEANEELRKRE----EQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467776544332323333 233333322 2335566788888888888887754444
No 56
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.40 E-value=3.3e+02 Score=29.28 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 153 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 153 ~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.+.+..+.+++.++..++.++.++..+.+.+++..
T Consensus 431 ~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 431 GEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444433
No 57
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=52.15 E-value=1.7e+02 Score=25.93 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=49.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~-lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERA 216 (331)
+....+...++++-+.+|++.+.+..++-+.. .++....++++++.+.+.+..+..|.+.+-...=.+++.|..-
T Consensus 50 ~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~ 125 (161)
T COG0711 50 ERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAE 125 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666655443 3556677888888888888888887777777666666666544
No 58
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=52.11 E-value=1.2e+02 Score=27.55 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
+..++.++.+++.++..+..+|+.+-+++.+|++.....=...|-..|+..+
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~~~ 216 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEEYA 216 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666777777777777777776666555555544444443
No 59
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=51.90 E-value=2.8e+02 Score=28.88 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=43.7
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 140 EIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAI 199 (331)
Q Consensus 140 ~~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~ 199 (331)
|..+|++++.|+-.. .++.++++..-+++|..++|++..|.-+.-...+...+...
T Consensus 171 DsSvspeq~kKlqdr----veK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ 226 (472)
T KOG2856|consen 171 DSSVSPEQLKKLQDR----VEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQ 226 (472)
T ss_pred CccCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 456999998887554 55667888889999999999999888888777776655443
No 60
>PRK14150 heat shock protein GrpE; Provisional
Probab=50.83 E-value=1.3e+02 Score=27.92 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 179 EMENVKDRTIREAENSKKFAIQNF 202 (331)
Q Consensus 179 EfEN~RKR~~rE~e~ak~~A~e~f 202 (331)
++.+...|+..|.++.++......
T Consensus 56 ~~kd~~lR~~AefeN~rkR~~kE~ 79 (193)
T PRK14150 56 EERDSVLRARAEVENIRRRAEQDV 79 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666544443
No 61
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=49.51 E-value=1.9e+02 Score=25.67 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccC
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 227 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski 227 (331)
+.+-+.+.++.+...-.+.++.+.+....+++++.-..-.+.+..++...|....-...-.+++....-.+....
T Consensus 41 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~----- 115 (173)
T PRK13460 41 ILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKD----- 115 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccCeee
Q 020069 228 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 281 (331)
Q Consensus 228 ~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp-vGepFDPn~HEAV 281 (331)
..-..+-.-.+-...+|.+-...+.+..-.. +|...|++.|..+
T Consensus 116 ----------~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~l 160 (173)
T PRK13460 116 ----------QAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAF 160 (173)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
No 62
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=48.78 E-value=46 Score=24.43 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 160 MAKNEEMKQMQDKVLRSFAEMENVKDR 186 (331)
Q Consensus 160 ~~~~~El~elkdk~lR~~AEfEN~RKR 186 (331)
..++.++..|+.++.++++.|.-|+|-
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888874
No 63
>PRK14155 heat shock protein GrpE; Provisional
Probab=48.69 E-value=2.3e+02 Score=26.62 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 166 MKQMQDKVLRSFAEMENVKDRTIREAEN 193 (331)
Q Consensus 166 l~elkdk~lR~~AEfEN~RKR~~rE~e~ 193 (331)
.+++.+--.|+..|.+++++.....+-.
T Consensus 40 ~AefeN~RKR~~kE~e~~~~~a~~~~~~ 67 (208)
T PRK14155 40 AAEAENTKRRAEREMNDARAYAIQKFAR 67 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666677777777777776555433
No 64
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=47.08 E-value=2e+02 Score=32.00 Aligned_cols=52 Identities=23% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
++|...+.+...++++..++++.+..++.+..++++.-+++++++++.....
T Consensus 519 ~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~ 570 (782)
T PRK00409 519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444444444444444444444443333333333
No 65
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=46.99 E-value=2e+02 Score=28.96 Aligned_cols=96 Identities=22% Similarity=0.275 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQ-----DKVLRSFAEMENVKDRTIREAE------------NSKKFAIQNFAKALLDVADN 212 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elk-----dk~lR~~AEfEN~RKR~~rE~e------------~ak~~A~e~f~kdLLpVlDn 212 (331)
+.|.++++.|..+-+++++|- +.-.-+..+.|-++.+-..+.+ ..++..+-.++-.+|.+.|+
T Consensus 122 ~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~~~~~~~~~~qkl~VCeVCGa~L~~~D~ 201 (319)
T KOG0796|consen 122 EKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNTTMPGASAQQQKLRVCEVCGAFLSVNDA 201 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCcchhhhhhhhhhHHHhhhHHHhccch
Confidence 356666666666666666553 3445556666666651111211 22334556778899999999
Q ss_pred HHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCe
Q 020069 213 LGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVE 264 (331)
Q Consensus 213 LERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe 264 (331)
=.|.-.++. ..++-|+.+|...+.++.+..+..
T Consensus 202 d~RlaDHf~-------------------GKlHlGy~~iR~~l~eLk~~~~~~ 234 (319)
T KOG0796|consen 202 DRRLADHFG-------------------GKLHLGYVLIREKLAELKKEKAKR 234 (319)
T ss_pred HHHHHHhhc-------------------chHHHHHHHHHHHHHHHHHHHhHH
Confidence 888877653 258899999999988888877753
No 66
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=46.84 E-value=2.5e+02 Score=31.26 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=5.7
Q ss_pred CCCceeEEe
Q 020069 290 PPGTVAHVL 298 (331)
Q Consensus 290 ~~gTVveVv 298 (331)
..|+|+++-
T Consensus 638 ~~g~v~~i~ 646 (771)
T TIGR01069 638 QKGKIVQIL 646 (771)
T ss_pred ceEEEEEEc
Confidence 457777764
No 67
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=46.72 E-value=2.5e+02 Score=26.36 Aligned_cols=101 Identities=8% Similarity=0.080 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHH-
Q 020069 172 KVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMT- 250 (331)
Q Consensus 172 k~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eGVemi- 250 (331)
.+..++++.+.++.+...+++..+..+...+-..+..+. ++.|...+... ++ .......+..+++++.-.
T Consensus 91 i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la--~~~A~kil~~~---~d----~~~~~~lid~~i~~l~~l~ 161 (246)
T TIGR03321 91 LLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEV--FAIARKVLTDL---AD----TDLEERMVDVFVQRLRTLD 161 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh---cC----hHHHHHHHHHHHHHhhcCC
Confidence 345666777777777777777777777777777766654 33333333321 11 111123445555555333
Q ss_pred ---HHHHHHHHHhCCCeeeCCCCCCCCcccCeee
Q 020069 251 ---EKQLGEVFKKFGVEKFDPINEPFDPHRHNAM 281 (331)
Q Consensus 251 ---~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV 281 (331)
...|...+..-|....-....|.+|...+.+
T Consensus 162 ~~~~~~l~~~~~~~~~~~~v~sa~~l~~~~~~~i 195 (246)
T TIGR03321 162 PDEKAALAEALADSGNPVLVRSAFELPEEQREQI 195 (246)
T ss_pred HHHHHHHHHHHhCCCCceEEEecCCCCHHHHHHH
Confidence 2334455565553322123556666655444
No 68
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.32 E-value=1.4e+02 Score=25.69 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 196 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~ 196 (331)
.+.+...+..++..++.++.++...+.+...+.+.+.........++++..+
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~k 119 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQK 119 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666666666666666655555443
No 69
>PRK11637 AmiB activator; Provisional
Probab=45.96 E-value=97 Score=31.39 Aligned_cols=49 Identities=8% Similarity=0.143 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 196 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~ 196 (331)
+.+.+..++.+|..++.+++.++.++..+.++.+..++.+.+-+..+.+
T Consensus 87 ~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 87 ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555544444444333
No 70
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=45.37 E-value=2e+02 Score=27.48 Aligned_cols=48 Identities=15% Similarity=0.239 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 204 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~k 204 (331)
.++...+.|+.+++.++..+..+|+.+-+.+.+|+..-...=+..|=.
T Consensus 159 dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~ 206 (234)
T cd07665 159 DKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKN 206 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556778888888888889999999999998887766554444433
No 71
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=45.24 E-value=2.8e+02 Score=30.17 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCe-eeCCCCCCCCcc
Q 020069 241 KSLLEGVEMTEKQLGEVFKKFGVE-KFDPINEPFDPH 276 (331)
Q Consensus 241 k~l~eGVemi~kqL~~vL~k~GVe-~IdpvGepFDPn 276 (331)
....+.++-..-.+.+...+.++. .....|.+|.|+
T Consensus 370 ~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe 406 (581)
T KOG0995|consen 370 EDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPE 406 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence 345555555566666677777766 344567667664
No 72
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=44.66 E-value=2.2e+02 Score=24.94 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMK 167 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~ 167 (331)
...++-++.|...+.+..
T Consensus 60 ~~~~e~e~~l~~A~~ea~ 77 (164)
T PRK14473 60 NAKRDYEAELAKARQEAA 77 (164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333433333333
No 73
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=44.36 E-value=3e+02 Score=27.65 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=21.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 173 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~ 173 (331)
.+.+.++|...+..++.+-..++.+++-++-+.
T Consensus 18 S~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~ 50 (310)
T PF09755_consen 18 SSATREQLRKRIESLQQENRVLKRELETEKARC 50 (310)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 346668888888777776666666665544443
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=44.33 E-value=2.9e+02 Score=26.33 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 020069 152 LKEREELLMAKNEEMKQMQDKVLRSFAE---MENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 219 (331)
Q Consensus 152 v~e~ee~L~~~~~El~elkdk~lR~~AE---fEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~ 219 (331)
|.+..++...|..|-...-+.+.-..+| +|++-+.++.|+...+..+ ..+-.++.++.|.+++.+..
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i-~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKI-QRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444334444 6888888899988866655 66778999999998888764
No 75
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.88 E-value=2.5e+02 Score=31.25 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 165 EMKQMQDKVLRSFAEMENVKDRTIREA 191 (331)
Q Consensus 165 El~elkdk~lR~~AEfEN~RKR~~rE~ 191 (331)
++++.++.+.+.+++.+..+++++++.
T Consensus 526 ~~e~~~~~~~~~~~e~~~~~~~l~~~~ 552 (771)
T TIGR01069 526 ELEQKNEHLEKLLKEQEKLKKELEQEM 552 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444443
No 76
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=43.86 E-value=92 Score=23.37 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENV 183 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~ 183 (331)
+..+++++++++.+...+.++.+++
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444433
No 77
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=43.78 E-value=61 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
+.-..++++.+++++.|-|+.+|..+++.+.+.
T Consensus 179 ~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 179 KKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 334556677777888888888888888877653
No 78
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=43.75 E-value=2.4e+02 Score=25.14 Aligned_cols=60 Identities=20% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNE---EMKQMQDKVLRSFAEMENVKDRTIREAENS-KKFAIQNFAK 204 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~---El~elkdk~lR~~AEfEN~RKR~~rE~e~a-k~~A~e~f~k 204 (331)
.+.+..++.+..+.|+.++. -.++|+.++..++++++-.....+.++... +.+|+...+.
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555544 344455555555555554444444444332 2344444433
No 79
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=43.52 E-value=2.4e+02 Score=29.93 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 191 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~ 191 (331)
.|+-.+.+++.++..+..+.+.++.+..|+++.-.|+..|.+..+
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av 107 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAV 107 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344445555556666666666666666666654444444444433
No 80
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=43.29 E-value=1.7e+02 Score=28.04 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HH------------HHHHHHHHHHHHhH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQD-----KVLRSFAEMENVKDRTIREAE---NS------------KKFAIQNFAKALLD 208 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkd-----k~lR~~AEfEN~RKR~~rE~e---~a------------k~~A~e~f~kdLLp 208 (331)
.+.+.++.++|..+-++++++-+ .-..+.++.+.++.-..+-.. .. ++.-+-.+.-.+|.
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls 201 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLS 201 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHh
Confidence 44555555555555555555532 334444555544432222111 11 12234456778999
Q ss_pred HHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 020069 209 VADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKF 261 (331)
Q Consensus 209 VlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~ 261 (331)
+.|+-.|.-.++.. .++-|+..|...+..+.++.
T Consensus 202 ~~D~d~RladH~~G-------------------K~HlGy~~IR~~l~el~e~~ 235 (254)
T PF03194_consen 202 VGDNDRRLADHFGG-------------------KQHLGYAKIREKLKELKEKR 235 (254)
T ss_pred ccchHHHHHHHhcc-------------------chhhhHHHHHHHHHHHHHHH
Confidence 99998888777532 46778888877777666543
No 81
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=43.19 E-value=2.4e+02 Score=25.09 Aligned_cols=119 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccC
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKI 227 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski 227 (331)
+.+.+.+.++.+...-.+.++.+.+....+++++.-....+.+...+...+....-...-.+++....-.+....
T Consensus 43 i~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~----- 117 (173)
T PRK13453 43 LKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIE----- 117 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC-CCCCCCcccCeee
Q 020069 228 DPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP-INEPFDPHRHNAM 281 (331)
Q Consensus 228 ~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp-vGepFDPn~HEAV 281 (331)
.....+-.-..-..+++.+-...+-+..... +|...|+..|..+
T Consensus 118 ----------~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~l 162 (173)
T PRK13453 118 ----------TAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKAL 162 (173)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHH
No 82
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=42.01 E-value=74 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 194 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~a 194 (331)
+.+..+|-+-.+++.++.+..+.......|..+|++|.++-.+..
T Consensus 127 rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~ 171 (265)
T PF06409_consen 127 RKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQ 171 (265)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence 344444555566777788888889999999999999887655443
No 83
>PRK04406 hypothetical protein; Provisional
Probab=41.81 E-value=1.7e+02 Score=23.08 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
.+.+...+.++|.++.-.+.-+++|.+-+.+.+.+++.+++.+..
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~ 50 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKY 50 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777888888777777888888777777777776665544
No 84
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=41.72 E-value=1.1e+02 Score=22.90 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRS 176 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~ 176 (331)
...+++++.+++.++++.++++.++.++
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444
No 85
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=40.78 E-value=2.1e+02 Score=24.38 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=14.8
Q ss_pred hhHHHHHHH-----HHHHHHHHHHHHHhCC
Q 020069 238 PLLKSLLEG-----VEMTEKQLGEVFKKFG 262 (331)
Q Consensus 238 ~~lk~l~eG-----Vemi~kqL~~vL~k~G 262 (331)
..++.+..+ |.-+...|.+.+...+
T Consensus 92 ~~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ 121 (171)
T PF03357_consen 92 KALKKINKQINLDKVEKLMDDFQEEMEDQD 121 (171)
T ss_dssp HHHHHHHHSTTSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 345555444 3356677777777766
No 86
>PRK11637 AmiB activator; Provisional
Probab=40.52 E-value=1.9e+02 Score=29.32 Aligned_cols=8 Identities=25% Similarity=0.268 Sum_probs=5.1
Q ss_pred CCCceeEE
Q 020069 290 PPGTVAHV 297 (331)
Q Consensus 290 ~~gTVveV 297 (331)
.+|+|+.+
T Consensus 346 ~~G~V~~~ 353 (428)
T PRK11637 346 ADGRVLLA 353 (428)
T ss_pred CCeEEEEe
Confidence 46777665
No 87
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=40.40 E-value=3.4e+02 Score=26.07 Aligned_cols=59 Identities=7% Similarity=0.115 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhh
Q 020069 160 MAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSV 219 (331)
Q Consensus 160 ~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~ 219 (331)
...-.+|..|.-++..+++.|..+..-..+.+....+. +.+.+..-=|.++-..+|...
T Consensus 17 N~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kk-Lg~~I~karPYyea~~~a~~a 75 (239)
T PF05276_consen 17 NQATDEINRLENELDEARATFRRLLSESTKKLNELAKK-LGSCIEKARPYYEARRKAKEA 75 (239)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhchHHHHHHHHHHH
Confidence 33344555555555556666666555555555444333 225677777888888777653
No 88
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.12 E-value=2.6e+02 Score=25.04 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 165 EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA 198 (331)
Q Consensus 165 El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A 198 (331)
+...++....++++|++.++.++..|+...+.-.
T Consensus 74 ~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~ 107 (177)
T PF07798_consen 74 EFAELRSENEKLQREIEKLRQELREEINKLRAEV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888877766533
No 89
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.92 E-value=1.2e+02 Score=25.37 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 154 EREELLMAKNEEMKQMQDKVLRSFAEMENVKD 185 (331)
Q Consensus 154 e~ee~L~~~~~El~elkdk~lR~~AEfEN~RK 185 (331)
+++.++..+++++++++.+..++.++.+.++.
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33344444555555555555555555555553
No 90
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.87 E-value=2.7e+02 Score=24.69 Aligned_cols=45 Identities=18% Similarity=0.337 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEE-------MKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~E-------l~elkdk~lR~~AEfEN~RKR~ 187 (331)
.....|.+.++++..+|..++.. +..+++++.-..+++..++..+
T Consensus 49 ien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l 100 (177)
T PF13870_consen 49 IENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQEL 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555554433 2334445544444444444443
No 91
>PRK09039 hypothetical protein; Validated
Probab=39.86 E-value=2.7e+02 Score=27.78 Aligned_cols=42 Identities=12% Similarity=0.085 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
..+++.++.+|..++.+|...+.+..-.++.++.+++++..-
T Consensus 143 ~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 143 NQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445444444444444455554444443
No 92
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.86 E-value=2.1e+02 Score=28.02 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
.+.|...+.+...++..+++++.+.+..+.++..+++-.+.|+....+-..+.
T Consensus 54 i~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 54 IESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666666666665555444444443
No 93
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=39.39 E-value=1.3e+02 Score=26.73 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 163 NEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 163 ~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
..|++.|+..+.|+.-|.++|+-+.
T Consensus 87 ~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 87 QQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 94
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.11 E-value=3.6e+02 Score=25.90 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEE----MKQMQDKVLRSFAEMENVKDRTIREAENSK 195 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~E----l~elkdk~lR~~AEfEN~RKR~~rE~e~ak 195 (331)
...|...++.++++++.++.+ .+++.+--.|+..|.+++++......-...
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~l 123 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEI 123 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544333 455666667777888888777665544433
No 95
>PRK00846 hypothetical protein; Provisional
Probab=38.44 E-value=2.1e+02 Score=23.02 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 195 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak 195 (331)
+-.+++...+.++|..+.-.+.-+++|.+-+.+.+..++.+++.+..=.+..+
T Consensus 6 ~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~ 58 (77)
T PRK00846 6 LRDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 58 (77)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888877778888888888888888887777665444433
No 96
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=37.79 E-value=1.3e+02 Score=28.99 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=37.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
..--+|=+.+.+.|+|+++.....++..++.++..++||--.+-.++
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888889999999999888888998888888888866665554
No 97
>PRK14127 cell division protein GpsB; Provisional
Probab=37.64 E-value=1.8e+02 Score=24.78 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
.+.++...=+.+....++.+.+++.+|+++..|+.+..+.++.|..
T Consensus 23 Yd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 23 YDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455554544555556677778888888888888888888888776
No 98
>PRK02793 phi X174 lysis protein; Provisional
Probab=37.56 E-value=2e+02 Score=22.49 Aligned_cols=43 Identities=21% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
++...+.++|.++.=.+.-+++|.+-+.+.+.+++-+++.+..
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~ 47 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRL 47 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777777777777777776666555444
No 99
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=37.51 E-value=5.7e+02 Score=28.56 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 020069 241 KSLLEGVEMTEKQLGEVFKKF 261 (331)
Q Consensus 241 k~l~eGVemi~kqL~~vL~k~ 261 (331)
..|..+|..|...|..+|..+
T Consensus 1018 ~~f~~~f~~~~~~f~~~~~~l 1038 (1164)
T TIGR02169 1018 EVFMEAFEAINENFNEIFAEL 1038 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888886655
No 100
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.36 E-value=3.6e+02 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 177 FAEMENVKDRTIREAENSKKFAIQNFAK 204 (331)
Q Consensus 177 ~AEfEN~RKR~~rE~e~ak~~A~e~f~k 204 (331)
.+++.+-..|+..+.++.++......-.
T Consensus 77 ~~elkd~~lR~~AefeN~RKR~~kE~e~ 104 (211)
T PRK14160 77 LEALKDRLLRTVAEYDNYRKRTAKEKEG 104 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556677777788887776655443
No 101
>PLN03217 transcription factor ATBS1; Provisional
Probab=37.13 E-value=1.6e+02 Score=24.55 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
.++.|++..++..+..+|=+...--..-+--..+.+.|.=||.|++.+|+.+.-+.
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSer 71 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSER 71 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999998887755432111123345678889999999999998876644
No 102
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=36.93 E-value=1e+02 Score=32.77 Aligned_cols=20 Identities=30% Similarity=0.175 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020069 165 EMKQMQDKVLRSFAEMENVK 184 (331)
Q Consensus 165 El~elkdk~lR~~AEfEN~R 184 (331)
+...++|++.|.+++-+|-.
T Consensus 151 q~arYqD~larkr~~~e~e~ 170 (630)
T KOG0742|consen 151 QRARYQDKLARKRYEDELEA 170 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776665543
No 103
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=36.29 E-value=3e+02 Score=25.08 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 151 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 185 (331)
Q Consensus 151 ~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RK 185 (331)
.+..++..+.....++..++..+.++...+..++.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~ 133 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKS 133 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443
No 104
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=35.70 E-value=3.3e+02 Score=28.49 Aligned_cols=43 Identities=7% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
..+..+..+.++..|+.+++++..+...+.++..+..++++++
T Consensus 54 i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 54 IREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 3444455566666677777777777777777777777776655
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.58 E-value=4.2e+02 Score=25.61 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKERE---ELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 195 (331)
Q Consensus 145 ~deL~k~v~e~e---e~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak 195 (331)
+.+|.+..++++ ..+..++.++++++.++.+...|..-+|+|..+......
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~ 83 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS 83 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444333 344556777888888889999999888888877665553
No 106
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=35.08 E-value=20 Score=32.40 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=22.7
Q ss_pred Cccccccccccccc-ccccccccccccCCCCC
Q 020069 46 NKLTQVSLFHQTTL-NSSIFQRFGFSSASPEP 76 (331)
Q Consensus 46 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (331)
-+..|+.++..-.+ +...||.|||+|.-|.-
T Consensus 14 ~Q~vQv~~~agE~~~~ve~~q~yGftS~Pp~G 45 (162)
T PF06890_consen 14 VQTVQVQGLAGETRDDVERFQQYGFTSVPPPG 45 (162)
T ss_pred eEEEEEEecCCchhcCcchhhcCccccCCCCC
Confidence 34488988876555 46789999999976543
No 107
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.03 E-value=4.7e+02 Score=28.84 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
.+.++.++++...|+.++++++...-.+.++++-++++..
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555544444455554444443
No 108
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=34.88 E-value=4.1e+02 Score=25.32 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 173 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 173 ~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
+..++++.+.++.+..++++..+..+...+-..+....
T Consensus 92 l~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la 129 (250)
T PRK14474 92 LNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQM 129 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666666555543
No 109
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.45 E-value=65 Score=28.96 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 161 AKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 161 ~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
..++|++++++++..+.+|++.+++..+.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555566655555543
No 110
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=34.16 E-value=3.8e+02 Score=24.77 Aligned_cols=52 Identities=6% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 020069 164 EEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 164 ~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERA 216 (331)
++++.++.++.++.+++...+..+..-+..+..+ ...+..++..++|.|...
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~-~~~~~~~~~~~~~~~Q~l 201 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALREL-NEIWNREWKAALDDFQDL 201 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888777777777776655 566888888888877643
No 111
>PRK10780 periplasmic chaperone; Provisional
Probab=34.05 E-value=3.3e+02 Score=23.99 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=9.3
Q ss_pred HHHHHHHHHhCCCeee
Q 020069 251 EKQLGEVFKKFGVEKF 266 (331)
Q Consensus 251 ~kqL~~vL~k~GVe~I 266 (331)
.+-+..+=++.|+.-|
T Consensus 126 ~~ai~~vak~~gy~~V 141 (165)
T PRK10780 126 QTAVKSVANKQGYDLV 141 (165)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 4445566666776654
No 112
>PRK04325 hypothetical protein; Provisional
Probab=33.94 E-value=2.3e+02 Score=22.22 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
+.+...+.++|.++.=.+.-+++|.+-+.+.+.+++.+++.+..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~ 48 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL 48 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777766677777777776666666665555443
No 113
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=33.30 E-value=3.5e+02 Score=24.07 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhh
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN-VKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE 222 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN-~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~ 222 (331)
.++|..........++....++..++..+... ++.+. ++=.+-.-...........++..++.+++.+..++..++.
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~-~~~~~~LkGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~ 82 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQF-ISSESSLKGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKD 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45555555555555555555555555443332 22233 5555555555555555667777777777777777754443
No 114
>PRK14157 heat shock protein GrpE; Provisional
Probab=32.89 E-value=4.5e+02 Score=25.22 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 164 EEMKQMQDKVLRSFAEMENVKDRTIREAEN 193 (331)
Q Consensus 164 ~El~elkdk~lR~~AEfEN~RKR~~rE~e~ 193 (331)
...+++.+--.|+..|.+.++++....+-.
T Consensus 102 R~~AEfeNyRKR~~rE~e~~~~~a~~~~~~ 131 (227)
T PRK14157 102 RERAEFINYRNRTQKEQDRFRQHGIIDVLT 131 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666678888888888877655433
No 115
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=32.58 E-value=3.6e+02 Score=23.97 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 020069 173 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLD 208 (331)
Q Consensus 173 ~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLp 208 (331)
..++..+.++++.+...+++..+..++..+=..++.
T Consensus 109 i~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~ 144 (167)
T PRK08475 109 EKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLN 144 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777666666666666555543
No 116
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=32.56 E-value=7.6e+02 Score=28.65 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCC
Q 020069 156 EELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAG 235 (331)
Q Consensus 156 ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~ 235 (331)
+..+..++++++.+..=-+++..+|+.+.+|...=..+..+ +..-.+.|..++..|++-.
T Consensus 948 ~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~d--l~~a~~~l~~~i~~~d~~~------------------ 1007 (1163)
T COG1196 948 EREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQRED--LEEAKEKLLEVIEELDKEK------------------ 1007 (1163)
T ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH------------------
Confidence 33444455555555544578888888888888654444332 2333444555555554322
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhC
Q 020069 236 AVPLLKSLLEGVEMTEKQLGEVFKKF 261 (331)
Q Consensus 236 ~~~~lk~l~eGVemi~kqL~~vL~k~ 261 (331)
...|.++|.-|...|..+|..+
T Consensus 1008 ----~~~f~~~f~~In~~F~~if~~L 1029 (1163)
T COG1196 1008 ----RERFKETFDKINENFSEIFKEL 1029 (1163)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHh
Confidence 2468889999999999999887
No 117
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=32.48 E-value=4.6e+02 Score=26.07 Aligned_cols=66 Identities=20% Similarity=0.256 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHH--HHHHHHHHHHHHHhHHHHHHHHh
Q 020069 153 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI--------------REAEN--SKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 153 ~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~--------------rE~e~--ak~~A~e~f~kdLLpVlDnLERA 216 (331)
++++.+|..++.+..++..+..|+.-|.+-.+.+.+ .+... +.+....+.++.|=..-|+|+||
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 444445555555555555555555555554444332 22211 22334566677777788888887
Q ss_pred hh
Q 020069 217 SS 218 (331)
Q Consensus 217 l~ 218 (331)
..
T Consensus 128 kR 129 (333)
T KOG1853|consen 128 KR 129 (333)
T ss_pred hh
Confidence 54
No 118
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=32.40 E-value=2.1e+02 Score=23.37 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
.+.+++...+ +..++.++.+++.+..++.....++.+++.++..
T Consensus 59 ~~~~ea~~~L---e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 59 QEKEEARTEL---KERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred ccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 3345555666777777777777777777766543
No 119
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.15 E-value=9e+02 Score=28.45 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQ---DKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 221 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elk---dk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~ 221 (331)
+.+.+...+..|..++++++.++ .++.++.+++++-.+-+.--..++...--..++.++-.+.+.++-.-..++
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666554 356666666666655555444555555555566666666666655544443
No 120
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.03 E-value=2.4e+02 Score=21.69 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 193 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ 193 (331)
...+.+++.++.-++.-+++|.+-+.+...+++-+++.+..=.+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~r 47 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRER 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666777766666666666666665543333
No 121
>PRK02119 hypothetical protein; Provisional
Probab=32.00 E-value=2.5e+02 Score=22.01 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
..+...+.++|.++.-.+.-+++|.+-+.+.+.+++-+++.+..=
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777788877777777777666655543
No 122
>PRK10869 recombination and repair protein; Provisional
Probab=31.85 E-value=3.1e+02 Score=29.15 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020069 188 IREAENSKKFAIQNFAKALLDVADNLGR 215 (331)
Q Consensus 188 ~rE~e~ak~~A~e~f~kdLLpVlDnLER 215 (331)
..++-..|+.+...|.+.+...+.+|..
T Consensus 361 A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 361 AQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455566667777777777777777765
No 123
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=31.53 E-value=3.3e+02 Score=23.21 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 169 MQDKVLRSFAEMENVKDRTIREAENSKK 196 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~~rE~e~ak~ 196 (331)
.+..+....+.++.-|..+++++..+..
T Consensus 85 a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555554443
No 124
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=31.34 E-value=1.9e+02 Score=27.51 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 191 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~ 191 (331)
||.....+-.++++..+.++..|++-+.++..|-|..|...++=+
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555667888888999999999999999999988888766
No 125
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=31.28 E-value=2.6e+02 Score=21.99 Aligned_cols=28 Identities=11% Similarity=0.082 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSF 177 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~ 177 (331)
..+...-+-+..++.++++++++...+.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333344444555555555433333
No 126
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=31.10 E-value=5.1e+02 Score=25.29 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=50.4
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhHHH
Q 020069 139 SEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFA------IQNFAKALLDVA 210 (331)
Q Consensus 139 ~~~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A------~e~f~kdLLpVl 210 (331)
.|..++++++.|+-.. ++..+.++..-+++|.....+++.|+.+..++....-+.. .-.|++++|-.+
T Consensus 161 ~d~~~~~~q~~K~~~k----~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~ 234 (258)
T cd07679 161 ADPALNPEQLKKLQDK----VEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEV 234 (258)
T ss_pred cCCcCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777655444 6667788889999999999999999999998877665433 346777766654
No 127
>PRK14141 heat shock protein GrpE; Provisional
Probab=30.71 E-value=4.7e+02 Score=24.70 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 191 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~ 191 (331)
+.|.+.+.++...+ -...+++.+--.|+..|.+++++......
T Consensus 41 ~~le~e~~elkd~~---lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~ 83 (209)
T PRK14141 41 EALKAENAELKDRM---LRLAAEMENLRKRTQRDVADARAYGIAGF 83 (209)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333 33345556666778888888877765544
No 128
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=30.66 E-value=6.6e+02 Score=26.42 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 214 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLE 214 (331)
..+.+.+...+....+++..+.+...++..+|++...++..+.......-.+..++.|+.+.-...
T Consensus 76 ~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~ 141 (448)
T COG1322 76 NELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVL 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566677788888899999999999999998888888777777777776654443
No 129
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=30.33 E-value=3.6e+02 Score=23.29 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDK-VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNL 213 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk-~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnL 213 (331)
+....++.++.|...+.+...+.+. ...+.++.+..+....++.+..+..+...+-...-.....|
T Consensus 57 a~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l 123 (141)
T PRK08476 57 VSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQL 123 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333322 23444445555555555555555555544444444443333
No 130
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.64 E-value=5.4e+02 Score=27.30 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 163 NEEMKQMQDKVLRSFAEMENVKDRTIREAENS 194 (331)
Q Consensus 163 ~~El~elkdk~lR~~AEfEN~RKR~~rE~e~a 194 (331)
.++++.+.+.-.++..+|+|+-.++-.+....
T Consensus 98 ~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~ 129 (475)
T PRK10361 98 DDKIRQMINSEQRLSEQFENLANRIFEHSNRR 129 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555667777777766665544433
No 131
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=29.50 E-value=4.6e+02 Score=24.23 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 169 MQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
++..+..+...++-|-+++.+|.+.-+..
T Consensus 138 l~~~ve~a~~~~e~f~~~~~~E~~rF~~~ 166 (201)
T cd07622 138 GEEAVKEAKDELNEFVKKALEDVERFKKQ 166 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444433
No 132
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.74 E-value=1e+03 Score=27.93 Aligned_cols=71 Identities=18% Similarity=0.342 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNE--------------------EMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 205 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~--------------------El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kd 205 (331)
.+|..++.++.++|+.++- ++.+++.++.-.+|+++.--+|..+|.+++. .+.+.....
T Consensus 227 ~eLr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaq-e~ke~~k~e 305 (1243)
T KOG0971|consen 227 EELRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQ-EAKERYKEE 305 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 3477777777777655432 2444555666666776666666665555554 346778888
Q ss_pred HhHHHHHHHHhh
Q 020069 206 LLDVADNLGRAS 217 (331)
Q Consensus 206 LLpVlDnLERAl 217 (331)
|-+..|++|.|.
T Consensus 306 mad~ad~iEmaT 317 (1243)
T KOG0971|consen 306 MADTADAIEMAT 317 (1243)
T ss_pred HHHHHHHHHHHH
Confidence 999999999885
No 133
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=28.73 E-value=2.2e+02 Score=30.32 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
-+.|+|..++-++...++.++++...--++++.-+-|-..+|-|++-|++.+++.
T Consensus 569 ~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 4677787788777777777666554444455555666667888888888887764
No 134
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.69 E-value=2.9e+02 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 161 AKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 161 ~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
.+++.+.++++++.-++++-+.++++..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~ele 159 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELE 159 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666554
No 135
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=28.35 E-value=4.6e+02 Score=23.94 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 154 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 154 e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
+++..++.++.+..+|+.+...+.+..+...++....
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555566666665666666665555443
No 136
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=28.26 E-value=3.6e+02 Score=22.71 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 144 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 186 (331)
Q Consensus 144 s~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR 186 (331)
...+|-..+..+++.+..+-+++.+++..+..+..|-..+|.-
T Consensus 2 dk~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~E 44 (107)
T PF06156_consen 2 DKKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIE 44 (107)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888888888887766555543
No 137
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=28.01 E-value=1.2e+02 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020069 169 MQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~ 187 (331)
+.+++..++++++.+|+.+
T Consensus 70 l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 70 LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 138
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.85 E-value=1.4e+02 Score=26.75 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 180 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEf 180 (331)
.+.+++++++|++.+.+++.++.+...+..||
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444445555555555555555554444
No 139
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=27.75 E-value=6e+02 Score=25.06 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCe
Q 020069 240 LKSLLEGVEMTEKQLGEVFKKFGVE 264 (331)
Q Consensus 240 lk~l~eGVemi~kqL~~vL~k~GVe 264 (331)
...+-.|+-.+.-.|..+.+++|+.
T Consensus 168 W~EINAA~Gq~~LLL~~la~~l~~~ 192 (314)
T PF04111_consen 168 WNEINAAWGQTALLLQTLAKKLNFK 192 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445555655666666666777776
No 140
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=27.57 E-value=3.1e+02 Score=21.73 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFA---EMENVKDRTIREAE---NSKKFAIQNFAK 204 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~A---EfEN~RKR~~rE~e---~ak~~A~e~f~k 204 (331)
.+++..++++.++.|.+... ++++++..+++.+. -.+..|+.+++.
T Consensus 12 keeL~~klk~~qeel~~~k~~~~~~~~ik~~~eK~L~~E~~LK~QAVNKLAE 63 (69)
T PF08912_consen 12 KEELNNKLKKQQEELQKLKEEEQEIEEIKAQYEKQLNTERTLKQQAVNKLAE 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555544443 34555555544432 345566665553
No 141
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.42 E-value=3.3e+02 Score=23.89 Aligned_cols=49 Identities=14% Similarity=0.193 Sum_probs=0.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQD--------KVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkd--------k~lR~~AEfEN~RKR~~r 189 (331)
..++.++|...+.+++++++.++..+..++. ...++..++..+++...+
T Consensus 107 ~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 107 SEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKK 163 (169)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
No 142
>PRK14159 heat shock protein GrpE; Provisional
Probab=27.41 E-value=4.9e+02 Score=23.87 Aligned_cols=52 Identities=13% Similarity=0.011 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENS 194 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~a 194 (331)
+..+++.++.++..+.......-.+++.+--.|+..|.+.+++......-..
T Consensus 27 ~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~ 78 (176)
T PRK14159 27 IEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKD 78 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333333333333334455666666777778877777766555433
No 143
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.40 E-value=6.2e+02 Score=25.10 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=34.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
+-+-...|...|+.++.+|.++...|-+-..++-.+.||-| .+++++...+.-++.+.+..-.++
T Consensus 223 h~V~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad~e-----~~~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 223 HMVKIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKADKE-----YQKELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcchh-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666665555555554444555556522 225555555555555555444433
No 144
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=27.26 E-value=2.8e+02 Score=22.80 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 154 EREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 154 e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
...++...+.+|.+.++-+-.-+.++..||+-|..-|
T Consensus 27 ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkne 63 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKNE 63 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344466677777778777788889999998776544
No 145
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.18 E-value=2.2e+02 Score=23.18 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMEN 182 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN 182 (331)
+.|.+.++.++..++.++++++++..++..+.+.+..
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444433
No 146
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=27.15 E-value=2.9e+02 Score=22.80 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 155 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 155 ~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
++..++.++..++.+..+..++...+.+.++.++.
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777777777777777777666554
No 147
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=27.08 E-value=2.3e+02 Score=21.09 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=16.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 174 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~l 174 (331)
..+|-++|...++-++.. .+.||++++.+|.
T Consensus 6 k~ls~~eL~~rl~~LD~~---ME~Eieelr~RY~ 36 (49)
T PF11629_consen 6 KFLSYEELQQRLASLDPE---MEQEIEELRQRYQ 36 (49)
T ss_dssp GGS-HHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHhCCHH---HHHHHHHHHHHHH
Confidence 347778877777665543 3444444444443
No 148
>PRK13410 molecular chaperone DnaK; Provisional
Probab=27.04 E-value=5.3e+02 Score=28.09 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=11.4
Q ss_pred ccCCHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKERE 156 (331)
Q Consensus 141 ~~ls~deL~k~v~e~e 156 (331)
..++.+++.+.+++.+
T Consensus 500 ~~ls~~ei~~~~~~~~ 515 (668)
T PRK13410 500 STLSEQEVNRMIQEAE 515 (668)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 4588888877776654
No 149
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=27.00 E-value=4e+02 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhCCCeee
Q 020069 248 EMTEKQLGEVFKKFGVEKF 266 (331)
Q Consensus 248 emi~kqL~~vL~k~GVe~I 266 (331)
..|..-+..+-++.|+.-|
T Consensus 116 ~~i~~~v~~~a~~~g~~~V 134 (158)
T PF03938_consen 116 KKINKAVEEYAKENGYDLV 134 (158)
T ss_dssp HHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHHHcCCeEE
Confidence 3445666777788888776
No 150
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=26.98 E-value=5.4e+02 Score=24.23 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 153 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 192 (331)
Q Consensus 153 ~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e 192 (331)
..++.+...+.+++..|++..-+..++++.+++|+..=..
T Consensus 91 rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 91 RQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 3344444556667788888888888899998888865433
No 151
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=26.93 E-value=4.5e+02 Score=24.75 Aligned_cols=108 Identities=13% Similarity=0.228 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhh
Q 020069 144 SRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKEN 223 (331)
Q Consensus 144 s~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~ 223 (331)
+.+++...+......+...+..+..+...+.-+..|++++.++..+ ...+--.+.++.++.+..+..
T Consensus 25 ~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~------------~~~~~~~l~~~t~~t~~~a~~- 91 (264)
T PF06008_consen 25 SIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATK------------VSRKAQQLNNNTERTLQRAQD- 91 (264)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH-
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCee
Q 020069 224 FLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNA 280 (331)
Q Consensus 224 ~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEA 280 (331)
+..++..+..-...+..-+..+|-......+..|+-.+.+|
T Consensus 92 ----------------L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea 132 (264)
T PF06008_consen 92 ----------------LEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEA 132 (264)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHH
No 152
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.79 E-value=4.1e+02 Score=24.34 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 158 LLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 158 ~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
+.+.++.++.+++.++..+.++.+.+.++...
T Consensus 105 e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 105 ENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777777777776666665544
No 153
>PRK09039 hypothetical protein; Validated
Probab=26.75 E-value=4.9e+02 Score=26.01 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 151 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 151 ~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
...+....+..++.||+.|+.++.++.+.++-...+.
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566666666666666666665555544
No 154
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.70 E-value=5.1e+02 Score=23.90 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKV------------LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~------------lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
..+..+++++-++.|.+.+.+..++.+.. ..+..+.+.+....+.+++..+..+...+-..+..+.
T Consensus 95 ~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lA 172 (205)
T PRK06231 95 KQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELA 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555655555555443332 2333444555555555555555555555555554443
No 155
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=26.53 E-value=3.4e+02 Score=28.54 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 179 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AE 179 (331)
-+-+.+.+.++|.+|..+++|...+.++..|+.|.
T Consensus 43 ~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~ 77 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELNRLQEENTQLNEERVREEAT 77 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777888877777777665544
No 156
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=26.09 E-value=3e+02 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
...+.++..+|+..+..++.|...+.-++.||++.|+-..|
T Consensus 136 Q~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA~k 176 (188)
T PF05335_consen 136 QQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAAYK 176 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666666666655443
No 157
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.89 E-value=2.8e+02 Score=20.55 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 020069 158 LLMAKNEEMKQMQDK 172 (331)
Q Consensus 158 ~L~~~~~El~elkdk 172 (331)
.+..+..+...|+..
T Consensus 34 ~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 34 KVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 158
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.71 E-value=4.8e+02 Score=28.30 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=7.1
Q ss_pred cCCCCCCcccc
Q 020069 71 SASPEPNEKEQ 81 (331)
Q Consensus 71 ~~~~~~~~~~~ 81 (331)
..+|+++|-|.
T Consensus 199 ~~~l~~gE~e~ 209 (557)
T COG0497 199 ELNLQPGEDEE 209 (557)
T ss_pred hcCCCCchHHH
Confidence 56777776554
No 159
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=25.45 E-value=1.3e+02 Score=30.03 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR-------SFAEMENVKDRT 187 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR-------~~AEfEN~RKR~ 187 (331)
...++|...+..-.+--..+..++.+++++|.- ++.+..++|+|+
T Consensus 255 ~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~~ 306 (306)
T PF04849_consen 255 AENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKRT 306 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
No 160
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.42 E-value=2.8e+02 Score=27.29 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=8.6
Q ss_pred HHHhHHHHHHHHhhhh
Q 020069 204 KALLDVADNLGRASSV 219 (331)
Q Consensus 204 kdLLpVlDnLERAl~~ 219 (331)
..++.-+..+++.+..
T Consensus 254 ~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 254 QELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555566666553
No 161
>smart00338 BRLZ basic region leucin zipper.
Probab=25.19 E-value=2.9e+02 Score=20.49 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 153 KEREELLMAKNEEMKQMQDKVLRSFAEMENVK 184 (331)
Q Consensus 153 ~e~ee~L~~~~~El~elkdk~lR~~AEfEN~R 184 (331)
.+++..+..+..+..+|..++..+..+...++
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 162
>PRK00295 hypothetical protein; Provisional
Probab=25.14 E-value=3.2e+02 Score=21.06 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
..+.++|.++.-.+.-+++|.+-+.+.+.+++.+++.+..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~ 44 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA 44 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666665555443
No 163
>PRK02224 chromosome segregation protein; Provisional
Probab=25.09 E-value=9.5e+02 Score=26.44 Aligned_cols=9 Identities=22% Similarity=0.586 Sum_probs=6.3
Q ss_pred CCCCCcccC
Q 020069 270 NEPFDPHRH 278 (331)
Q Consensus 270 GepFDPn~H 278 (331)
|.+|++.-.
T Consensus 458 ~r~~~~~~~ 466 (880)
T PRK02224 458 GQPVEGSPH 466 (880)
T ss_pred CCcCCCcch
Confidence 788877554
No 164
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.04 E-value=8.6e+02 Score=25.91 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
+-..|-|..++.+ ++++++++..+..+-.++++|-+.+|+|-.
T Consensus 55 DTP~DTlrTlva~----~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~ 97 (472)
T TIGR03752 55 DTPADTLRTLVAE----VKELRKRLAKLISENEALKAENERLQKREQ 97 (472)
T ss_pred CCccchHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3556677777776 555677777777777778888887776643
No 165
>PRK00736 hypothetical protein; Provisional
Probab=25.02 E-value=3.3e+02 Score=21.04 Aligned_cols=43 Identities=14% Similarity=0.279 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 192 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e 192 (331)
..+.++|.++.-.+.-+++|.+-+.+-+.+++-+++++..=.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~ 47 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTE 47 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666777777777777777666666554333
No 166
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.84 E-value=2.1e+02 Score=23.91 Aligned_cols=32 Identities=3% Similarity=-0.058 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 178 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~A 178 (331)
++.+.++++++++++++++.+.|+.+..++.-
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 33444444444444444444444444444443
No 167
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=24.72 E-value=2.8e+02 Score=27.75 Aligned_cols=31 Identities=23% Similarity=0.247 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
|....-..+.|..++.|-.+|+|..|||++.
T Consensus 128 Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 128 LNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334456677888888888888888754
No 168
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=24.69 E-value=4.2e+02 Score=22.24 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVL-RSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLG 214 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~l-R~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLE 214 (331)
..+....+.+-++.|...+.+..++.+... .+.++.++.+....++.+.....+...+-..--.....|.
T Consensus 52 ~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~ 122 (140)
T PRK07353 52 LAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLE 122 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 169
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.54 E-value=3.1e+02 Score=25.05 Aligned_cols=10 Identities=30% Similarity=0.664 Sum_probs=4.3
Q ss_pred CCHHHHHHHH
Q 020069 143 LSRDDLVKLL 152 (331)
Q Consensus 143 ls~deL~k~v 152 (331)
++.++...-+
T Consensus 80 ltl~~vI~fL 89 (161)
T TIGR02894 80 LTLQDVISFL 89 (161)
T ss_pred CCHHHHHHHH
Confidence 4444444333
No 170
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.43 E-value=4.5e+02 Score=26.65 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeeeCCCC--CCCCcc
Q 020069 241 KSLLEGVEMTEKQLGEVFKKFGVEKFDPIN--EPFDPH 276 (331)
Q Consensus 241 k~l~eGVemi~kqL~~vL~k~GVe~IdpvG--epFDPn 276 (331)
..+.-. -+++..+.+-..+.|+..++--| ..|||+
T Consensus 329 ~~~~~~-~~l~~~~i~~a~~~G~~~ydf~Gi~~~~~~~ 365 (406)
T PF02388_consen 329 RKFYAP-YLLQWEAIKYAKEKGIKRYDFGGISGDFDGS 365 (406)
T ss_dssp GGCTHH-HHHHHHHHHHHHHTT-SEEEEEE-SSSSTTT
T ss_pred HhcCcc-hHHHHHHHHHHHHCCCCEEEeeCCCCCCCCC
Confidence 344433 34555566667788999998533 347663
No 171
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.42 E-value=2.5e+02 Score=25.06 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEe
Q 020069 242 SLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVL 298 (331)
Q Consensus 242 ~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVv 298 (331)
.+.+-++.+...+...+.+.||.++++-++ -=-.+-=++... ++..+|.|+.-+
T Consensus 64 ~~~~~~~~l~~~~~~~~~kvgvvRYnAF~d-mGg~LSFslAlL--D~~~nGvVltsI 117 (151)
T PF14584_consen 64 ELEKRIEELEEKLRNCVQKVGVVRYNAFED-MGGDLSFSLALL--DDNNNGVVLTSI 117 (151)
T ss_pred HHHHHHHHHHHHHHhccceEEEEEccCccc-ccccceeeeEEE--eCCCCEEEEEee
Confidence 455667777889999999999999998322 101122233333 344567776554
No 172
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.36 E-value=3.3e+02 Score=20.87 Aligned_cols=41 Identities=12% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
+.+.+...+..++..++.+..++..-.+...+..|..+++.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.19 E-value=4.3e+02 Score=25.96 Aligned_cols=12 Identities=8% Similarity=-0.119 Sum_probs=5.8
Q ss_pred hCCCeeeCCCCC
Q 020069 260 KFGVEKFDPINE 271 (331)
Q Consensus 260 k~GVe~IdpvGe 271 (331)
.+|+.-+...|.
T Consensus 291 ~~gw~~~~~~~~ 302 (325)
T PF08317_consen 291 LTGWKIVSISGS 302 (325)
T ss_pred HHCcEEEEEeCC
Confidence 445555544443
No 174
>PRK14153 heat shock protein GrpE; Provisional
Probab=24.05 E-value=5.9e+02 Score=23.73 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREA 191 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~ 191 (331)
+.+.+.+.++...+..+ .+++.+--.|+..|.+++++......
T Consensus 43 ~~l~~e~~elkd~~lR~---~AEfeN~rKR~~kE~e~~~~~a~~~~ 85 (194)
T PRK14153 43 EKCREEIESLKEQLFRL---AAEFDNFRKRTAREMEENRKFVLEQV 85 (194)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544444333 44555555666666666666655443
No 175
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=23.86 E-value=5.6e+02 Score=27.82 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCC
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 229 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~ 229 (331)
|...++++-++..+. ...-+.|.-...+|+++-|-+.|-.......++-+|+-..|--++++=...-.-++...+++.
T Consensus 27 Kr~del~~~i~~i~n--~~ki~Dw~~i~~eFd~L~k~~~K~~~~~~~~~~P~~yir~l~~Led~v~e~~~~ke~~Kkms~ 104 (595)
T PF05470_consen 27 KRFDELEEIIKQIRN--AMKINDWSSILTEFDKLNKQLEKSKKIQQNEGIPRFYIRALVELEDFVNETWADKEAKKKMSK 104 (595)
T ss_pred HHHHHHHHHHHHHHH--HHhhccHHHHHHHHHHHHHHHHHHhhhhhcCCCChhHHHHHHHHHHHHHHHHhhhHhhhhcCH
Confidence 455555444443322 122346889999999999999998776666777777766666666654442111111111211
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhC
Q 020069 230 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKF 261 (331)
Q Consensus 230 s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~ 261 (331)
...+.+..+.+-|+=..+.+...+.++
T Consensus 105 -----~nakaln~lkQklkK~~k~~e~~i~~y 131 (595)
T PF05470_consen 105 -----NNAKALNTLKQKLKKYNKEYEAQIAKY 131 (595)
T ss_pred -----HhHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 122445555555555555555555554
No 176
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=23.59 E-value=3.3e+02 Score=22.84 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 162 KNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 196 (331)
Q Consensus 162 ~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~ 196 (331)
+...+..+++++..+..+.+.+++.+.+..++.+.
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777766665553
No 177
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=23.55 E-value=5.9e+02 Score=23.50 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 151 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 186 (331)
Q Consensus 151 ~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR 186 (331)
.+..++..+..++..+..++.++..+...++.+|.+
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555555443
No 178
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.46 E-value=2.3e+02 Score=30.11 Aligned_cols=19 Identities=5% Similarity=0.108 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020069 152 LKEREELLMAKNEEMKQMQ 170 (331)
Q Consensus 152 v~e~ee~L~~~~~El~elk 170 (331)
+++.+..+++++++++.++
T Consensus 71 LteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3343444444555555554
No 179
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=23.46 E-value=3.9e+02 Score=28.71 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q 020069 241 KSLLEGVEMTEKQLGEVFKKF 261 (331)
Q Consensus 241 k~l~eGVemi~kqL~~vL~k~ 261 (331)
..+++-+-..|.++.-.+.+.
T Consensus 291 ~~~~~~~~~~y~~~~p~i~~~ 311 (555)
T TIGR03545 291 RKYLQKFLKYYDQAEPLLNKS 311 (555)
T ss_pred HHHHHHHHHHHHHHhHhhccc
Confidence 334444444455544444443
No 180
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=23.31 E-value=3.5e+02 Score=20.75 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
.+|...++=.+..++++...+.+....+.++...+..++.|+..
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666666554
No 181
>PRK14149 heat shock protein GrpE; Provisional
Probab=23.22 E-value=6.1e+02 Score=23.60 Aligned_cols=47 Identities=11% Similarity=-0.016 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 195 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak 195 (331)
++|.+.++++...+ ....+++.+--.|+..|.+++++.....+-...
T Consensus 46 ~~l~~e~~elkd~~---lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~L 92 (191)
T PRK14149 46 EDFELKYKEMHEKY---LRVHADFENVKKRLERDKSMALEYAYEKIALDL 92 (191)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444 334455666667888888888777766554433
No 182
>PRK14148 heat shock protein GrpE; Provisional
Probab=23.16 E-value=5.8e+02 Score=23.80 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNE----EMKQMQDKVLRSFAEMENVKDRTIREAEN 193 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~----El~elkdk~lR~~AEfEN~RKR~~rE~e~ 193 (331)
.+...+.++++++++++. ..+++.+--.|+..|.++.++......-.
T Consensus 44 ~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~ 94 (195)
T PRK14148 44 RAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAK 94 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333 34556666678888888888777555443
No 183
>PRK04325 hypothetical protein; Provisional
Probab=23.16 E-value=3.7e+02 Score=21.06 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
..+|...++=.+.-++.+.+.+.+.+..+.++...+..+..|+.
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777777777777777777777777777664
No 184
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=23.10 E-value=3.7e+02 Score=21.40 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVL 174 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~l 174 (331)
+.|...+..++.++..++-+..++.+.|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~ 41 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQELQDEYK 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544443
No 185
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=23.04 E-value=5.1e+02 Score=22.57 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK 196 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~ 196 (331)
.|...++.-...|..++++++.....|.+..+.+..+++.++......++
T Consensus 31 ~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~ 80 (160)
T PF13094_consen 31 ALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 186
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=23.00 E-value=5.9e+02 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVL 174 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~l 174 (331)
++...+.+++..+..++.++.+++.++-
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 187
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=22.84 E-value=5.5e+02 Score=22.90 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 020069 144 SRDDLVKLLKEREELLMAKNEEMKQMQDKV------------LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDV 209 (331)
Q Consensus 144 s~deL~k~v~e~ee~L~~~~~El~elkdk~------------lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpV 209 (331)
...+..+.+++-+++|...+.+..++.+.. ..+.++.+.+....+++++..+..+...+-..+..+
T Consensus 73 ~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 73 LREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556655555555544332 223333344444444455555555555554444443
No 188
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.66 E-value=5.6e+02 Score=22.90 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKV-LRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNL 213 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~-lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnL 213 (331)
.++.++-++.|...+.+..++.+.. ..+....+......+++.+.....|...+-..--.+...|
T Consensus 75 ~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l 140 (184)
T CHL00019 75 IEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQV 140 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333222 1222333444444444444444444444444444444333
No 189
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.56 E-value=4.7e+02 Score=22.13 Aligned_cols=46 Identities=7% Similarity=0.192 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
+.+.++-.+.+.. .++.+++.++.+...+......++.++..+.+-
T Consensus 89 E~~~~eA~~~l~~---~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l 134 (140)
T PRK03947 89 EKDLDEAIEILDK---RKEELEKALEKLEEALQKLASRIAQLAQELQQL 134 (140)
T ss_pred EecHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444433 334445555566666666666666666555543
No 190
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.37 E-value=6.3e+02 Score=23.39 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCCeee
Q 020069 242 SLLEGVEMTEKQLGEVFK-KFGVEKF 266 (331)
Q Consensus 242 ~l~eGVemi~kqL~~vL~-k~GVe~I 266 (331)
.+..-+......+..-|. =|.|+.+
T Consensus 137 ~l~~~l~~~r~~l~~~l~~ifpI~~~ 162 (302)
T PF10186_consen 137 QLQSQLARRRRQLIQELSEIFPIEQV 162 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCceee
Confidence 344445555666555554 3455544
No 191
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.31 E-value=5e+02 Score=22.26 Aligned_cols=45 Identities=11% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.|.++|.+.-.+++..+..++.+......+..-++|.+.-.++-+
T Consensus 30 ~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 30 TSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 192
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.17 E-value=3.6e+02 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.085 Sum_probs=19.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMK 167 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~ 167 (331)
..+|.+||..-++.++.++.-++.++.
T Consensus 19 s~lSv~EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 19 SLLSVEELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899988888887766665555444
No 193
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=22.00 E-value=5.6e+02 Score=22.72 Aligned_cols=45 Identities=9% Similarity=0.015 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 166 MKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 166 l~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
.++++.++..+..+.+.++....++.+..+...+...-.+.=.+.
T Consensus 76 ~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~ 120 (167)
T PRK08475 76 KEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI 120 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555554444444444444433333
No 194
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.83 E-value=5.4e+02 Score=22.43 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 163 NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 163 ~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
+.++.+++..+..+..+++-+..++..|+......
T Consensus 151 ~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~ 185 (218)
T cd07596 151 EEELEEAESALEEARKRYEEISERLKEELKRFHEE 185 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666666555443
No 195
>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]
Probab=21.66 E-value=4.5e+02 Score=25.40 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeee
Q 020069 241 KSLLEGVEMTEKQLGEVFKKFGVEKF 266 (331)
Q Consensus 241 k~l~eGVemi~kqL~~vL~k~GVe~I 266 (331)
..++-|.-|+...+...|+++|+.+.
T Consensus 210 GklHlGy~~~R~dl~~llk~~~~sr~ 235 (258)
T COG5200 210 GKLHLGYLLVRSDLADLLKKFGISRV 235 (258)
T ss_pred cchhhhHHHHHHHHHHHHHHhccchh
Confidence 36889999999999999999998774
No 196
>PHA02109 hypothetical protein
Probab=21.44 E-value=2.7e+02 Score=26.19 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEM 180 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEf 180 (331)
.+++.+++-.|+.+..|+..++++++..+|+.
T Consensus 192 L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 192 LKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888889999999999999988887764
No 197
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.24 E-value=1e+03 Score=25.52 Aligned_cols=11 Identities=36% Similarity=0.622 Sum_probs=4.4
Q ss_pred HHHHHHHHHHh
Q 020069 250 TEKQLGEVFKK 260 (331)
Q Consensus 250 i~kqL~~vL~k 260 (331)
+.+.+..+|.+
T Consensus 507 le~~~~~~f~~ 517 (650)
T TIGR03185 507 LEEEITKSFKK 517 (650)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 198
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=21.24 E-value=4.2e+02 Score=21.56 Aligned_cols=46 Identities=13% Similarity=0.368 Sum_probs=28.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
.+.+.++..+.+.++ ++.++++++++.+.+....+.+..++..+++
T Consensus 81 ve~~~~eA~~~l~~r---~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 81 VEKSLEEAIEFLKKR---LETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred EEecHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666665555543 3445566667777777777777776665543
No 199
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=21.24 E-value=1.9e+02 Score=27.43 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 175 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR 175 (331)
.+...|.+++.++++.|-.++.+...|..+|+-
T Consensus 57 ~~~~~L~~~LrEkEErILaLEad~~kWEqkYLE 89 (205)
T PF12240_consen 57 NNASNLKELLREKEERILALEADMTKWEQKYLE 89 (205)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999999999863
No 200
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=21.13 E-value=3.3e+02 Score=29.94 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 020069 155 REELLMAKNEEMKQMQDKVLRSFAE------------MENVKDRTIREAENSKKFA 198 (331)
Q Consensus 155 ~ee~L~~~~~El~elkdk~lR~~AE------------fEN~RKR~~rE~e~ak~~A 198 (331)
+.+.|+++++++.+++-.+.++.|+ .+..++++++-.+++.+..
T Consensus 641 l~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~ 696 (759)
T KOG0981|consen 641 LAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLE 696 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 3334555556666666666666655 5666666666666555443
No 201
>PRK04406 hypothetical protein; Provisional
Probab=21.09 E-value=4.2e+02 Score=20.91 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.++|...++=.+..++.+.+.+.+.+..+.++.+.+..++.|+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555
No 202
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=21.03 E-value=6.4e+02 Score=23.00 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 173 VLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 173 ~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
+.++..+.+++++|........++..+-..=..++.++
T Consensus 50 ~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~ 87 (198)
T PRK01558 50 KAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLF 87 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788888888888777777766666666544
No 203
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.91 E-value=5.5e+02 Score=22.18 Aligned_cols=27 Identities=11% Similarity=0.223 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 163 NEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 163 ~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
-+++.+...++.+.+.|++.++.+..+
T Consensus 130 ~~~i~~~~kkr~~~~ldyd~~~~k~~k 156 (229)
T PF03114_consen 130 FKEIKKLIKKREKKRLDYDSARSKLEK 156 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777888999999988876
No 204
>PRK00295 hypothetical protein; Provisional
Probab=20.91 E-value=4e+02 Score=20.55 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
..+|...++=.+..++.+.+.+...+..+.++...+..++.|+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777776654
No 205
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.60 E-value=5.5e+02 Score=27.20 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 217 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 217 (331)
-..--|+|.++..+.++.+..+...+++.....+.+.|....+.+.=+-++.+.- +..++++|-++++.+..++
T Consensus 124 YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~E-Ll~l~~~LP~~~~~i~~~i 197 (507)
T PF05600_consen 124 YEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREE-LLELVKELPSLFDEIVEAI 197 (507)
T ss_pred ccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHH-HHHHHHhhHHHHHHHHHHH
Confidence 4455677888888888888777777777666666666666665554333333222 3334455555555544444
No 206
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=20.41 E-value=3.6e+02 Score=25.64 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAE 179 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AE 179 (331)
.+.|++.+.+++..|++.++++.+.+..|..+.+.
T Consensus 34 Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~ 68 (207)
T PF05546_consen 34 IEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ 68 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999888888888777666544
No 207
>PF14388 DUF4419: Domain of unknown function (DUF4419)
Probab=20.30 E-value=2e+02 Score=28.33 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHhhh
Q 020069 175 RSFAEMENVKDRTIREAENSKKFA--IQNFAKALLDVADNLGRASS 218 (331)
Q Consensus 175 R~~AEfEN~RKR~~rE~e~ak~~A--~e~f~kdLLpVlDnLERAl~ 218 (331)
=...|+++++.|+++=.+ ++ ...++..|.||+|.|-.+.+
T Consensus 142 Gt~~DW~~L~~r~~~L~e----fg~~~~~w~~~L~pIl~~fi~s~~ 183 (299)
T PF14388_consen 142 GTREDWEKLLERLDRLKE----FGEEMEWWASLLRPILDRFIASFD 183 (299)
T ss_pred ecHHHHHHHHHHHHHHHH----hCccHHHHHHHHHHHHHHHHHHhc
Confidence 356888888888877554 55 88999999999999987765
No 208
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=20.18 E-value=7.1e+02 Score=23.18 Aligned_cols=56 Identities=9% Similarity=0.089 Sum_probs=33.3
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCC
Q 020069 199 IQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDP 268 (331)
Q Consensus 199 ~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~Idp 268 (331)
.++-+..+..-+++|+..+..+... ..-..++.|+..--+.|..+...+.|..|+.
T Consensus 79 ~E~ql~q~~~ql~nLEq~~~~iE~a--------------~~~~ev~~aLk~g~~aLK~~~k~~~idkVd~ 134 (191)
T PTZ00446 79 YEQEIENILNNRLTLEDNMINLENM--------------HLHKIAVNALSYAANTHKKLNNEINTQKVEK 134 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4555666777777777766544220 1113456666666666777777777666653
No 209
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=20.08 E-value=5.5e+02 Score=27.92 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=0.0
Q ss_pred ccccccccCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 126 ATDRTKESDSDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKA 205 (331)
Q Consensus 126 ~~~~~~~~~~~~~~~~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kd 205 (331)
.......++.+.........++|.+.+.++...+..+..+++.++..+..+..+.+..+....+-.++.+ +.+=+.+
T Consensus 311 ~~~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~---l~~k~~~ 387 (594)
T PF05667_consen 311 VPPKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK---LKKKTVE 387 (594)
T ss_pred CCcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred HhH
Q 020069 206 LLD 208 (331)
Q Consensus 206 LLp 208 (331)
|||
T Consensus 388 lL~ 390 (594)
T PF05667_consen 388 LLP 390 (594)
T ss_pred Hhc
Done!