Query 020069
Match_columns 331
No_of_seqs 221 out of 1178
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 11:18:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ani_A Protein GRPE; chaperone 100.0 1.4E-46 4.7E-51 344.4 19.0 153 152-318 61-213 (213)
2 1dkg_A Nucleotide exchange fac 100.0 3.3E-46 1.1E-50 338.2 17.9 155 150-320 42-196 (197)
3 3a6m_A Protein GRPE, HSP-70 co 100.0 1E-46 3.4E-51 336.8 9.3 151 151-320 20-170 (177)
4 3swy_A Cyclic nucleotide-gated 86.1 4.2 0.00014 28.7 7.6 41 155-195 3-43 (46)
5 3swf_A CGMP-gated cation chann 82.5 10 0.00034 29.3 8.9 43 155-197 5-47 (74)
6 2v71_A Nuclear distribution pr 79.9 33 0.0011 30.6 15.4 71 150-220 42-128 (189)
7 2l5g_B Putative uncharacterize 74.8 6.6 0.00023 27.3 5.2 36 142-177 1-36 (42)
8 2v66_B Nuclear distribution pr 73.8 36 0.0012 28.0 14.7 71 150-220 3-75 (111)
9 3mq7_A Bone marrow stromal ant 72.2 14 0.00047 30.9 7.5 41 148-188 62-102 (121)
10 3tso_C RAB11 family-interactin 71.6 9.8 0.00033 29.4 6.1 33 141-173 12-44 (75)
11 2v4h_A NF-kappa-B essential mo 70.5 40 0.0014 27.8 9.9 39 143-181 24-62 (110)
12 3nmd_A CGMP dependent protein 69.7 18 0.00061 27.7 7.1 43 145-187 21-63 (72)
13 3jsv_C NF-kappa-B essential mo 66.5 44 0.0015 26.8 9.1 39 143-181 2-40 (94)
14 3ghg_A Fibrinogen alpha chain; 58.3 83 0.0029 32.3 11.6 11 174-184 77-87 (562)
15 3he5_A Synzip1; heterodimeric 55.8 48 0.0016 23.0 6.6 21 168-188 28-48 (49)
16 3nmd_A CGMP dependent protein 55.3 19 0.00066 27.5 5.0 34 151-184 34-67 (72)
17 3plt_A Sphingolipid long chain 53.0 1.4E+02 0.0048 27.4 11.7 61 161-221 135-195 (234)
18 3hnw_A Uncharacterized protein 51.2 76 0.0026 26.6 8.6 40 150-189 75-114 (138)
19 2gzd_C RAB11 family-interactin 50.7 6 0.00021 32.4 1.6 33 141-173 44-76 (107)
20 3efg_A Protein SLYX homolog; x 50.0 49 0.0017 25.3 6.6 54 142-195 6-59 (78)
21 4emc_A Monopolin complex subun 48.2 1.2E+02 0.0041 27.1 9.7 64 141-210 18-81 (190)
22 3na7_A HP0958; flagellar bioge 46.6 1.6E+02 0.0055 26.4 11.9 48 145-192 34-81 (256)
23 3etw_A Adhesin A; antiparallel 45.6 1.3E+02 0.0044 24.9 10.2 37 169-217 69-105 (119)
24 2yy0_A C-MYC-binding protein; 45.2 33 0.0011 24.4 4.6 28 145-172 21-48 (53)
25 3hnw_A Uncharacterized protein 44.5 1.2E+02 0.0041 25.4 8.8 42 146-187 78-119 (138)
26 3htk_A Structural maintenance 43.1 83 0.0028 22.0 7.9 47 147-193 9-55 (60)
27 2eqb_B RAB guanine nucleotide 40.7 1.4E+02 0.0048 23.9 8.4 52 143-194 5-59 (97)
28 2avr_X Adhesion A; antiparalle 40.5 62 0.0021 27.0 6.2 36 169-216 69-104 (119)
29 1l8d_A DNA double-strand break 40.5 91 0.0031 24.2 7.1 46 143-188 57-102 (112)
30 3mq7_A Bone marrow stromal ant 40.3 78 0.0027 26.4 6.7 39 149-187 70-108 (121)
31 1uix_A RHO-associated kinase; 40.1 1.2E+02 0.0042 23.0 10.4 56 148-204 9-64 (71)
32 1d7m_A Cortexillin I; coiled-c 40.0 99 0.0034 24.8 7.0 48 141-188 16-63 (101)
33 1j1d_B Troponin T, TNT; THIN f 39.6 1.3E+02 0.0044 24.3 7.9 47 141-187 40-86 (106)
34 3na7_A HP0958; flagellar bioge 38.7 1.8E+02 0.0062 26.0 9.7 22 242-267 176-197 (256)
35 4etp_A Kinesin-like protein KA 37.8 1.1E+02 0.0038 29.7 8.6 15 252-266 131-145 (403)
36 2xv5_A Lamin-A/C; structural p 37.1 1.3E+02 0.0046 22.7 8.4 18 178-195 36-53 (74)
37 1zxa_A CGMP-dependent protein 37.0 50 0.0017 24.9 4.7 26 146-171 14-39 (67)
38 2yy0_A C-MYC-binding protein; 36.9 58 0.002 23.2 4.8 30 159-188 21-50 (53)
39 2zvf_A Alanyl-tRNA synthetase; 35.9 44 0.0015 27.8 4.8 9 171-179 32-40 (171)
40 2jee_A YIIU; FTSZ, septum, coi 34.1 1.6E+02 0.0056 22.8 10.1 38 148-185 11-48 (81)
41 1gmj_A ATPase inhibitor; coile 33.8 1.5E+02 0.005 23.3 7.0 21 166-186 53-73 (84)
42 1ytz_T Troponin T; muscle, THI 33.1 1.4E+02 0.0046 24.3 7.0 47 141-187 40-86 (107)
43 3mq9_A Bone marrow stromal ant 32.8 67 0.0023 30.9 6.1 24 147-170 401-424 (471)
44 3he4_B Synzip5; heterodimeric 32.5 1.2E+02 0.0041 20.7 5.7 32 146-181 6-37 (46)
45 1s1c_X RHO-associated, coiled- 32.0 1.7E+02 0.0057 22.2 10.1 56 148-204 4-64 (71)
46 3u06_A Protein claret segregat 31.7 1.5E+02 0.005 29.0 8.4 15 252-266 129-143 (412)
47 1gk6_A Vimentin; intermediate 31.2 1.4E+02 0.0048 21.3 6.2 20 177-196 30-49 (59)
48 1t6f_A Geminin; coiled-coil, c 30.8 68 0.0023 21.5 4.0 26 145-170 9-34 (37)
49 1gd2_E Transcription factor PA 30.6 78 0.0027 23.8 4.9 33 155-187 27-59 (70)
50 2zqm_A Prefoldin beta subunit 30.3 1.4E+02 0.0047 23.1 6.6 45 142-189 65-109 (117)
51 1u2m_A Histone-like protein HL 30.2 40 0.0014 27.4 3.5 50 167-216 63-112 (143)
52 4etp_A Kinesin-like protein KA 28.8 1.2E+02 0.0041 29.5 7.1 13 182-194 45-57 (403)
53 3kin_B Kinesin heavy chain; mo 28.8 95 0.0032 25.1 5.5 32 143-174 82-113 (117)
54 4e81_A Chaperone protein DNAK; 28.6 2.7E+02 0.0093 24.5 9.0 17 141-157 117-133 (219)
55 1t3j_A Mitofusin 1; coiled coi 28.0 1.9E+02 0.0067 23.0 7.0 18 167-184 74-91 (96)
56 3t98_B Nucleoporin NUP58/NUP45 27.9 1.7E+02 0.006 23.0 6.7 50 141-190 42-91 (93)
57 2wt7_B Transcription factor MA 27.8 1.9E+02 0.0066 22.8 6.9 27 161-187 59-85 (90)
58 3cvf_A Homer-3, homer protein 26.9 1.8E+02 0.0063 22.4 6.5 27 158-184 14-40 (79)
59 2jee_A YIIU; FTSZ, septum, coi 25.0 2.2E+02 0.0077 22.0 6.7 26 145-170 15-40 (81)
60 3twe_A Alpha4H; unknown functi 24.6 1.2E+02 0.0041 18.7 3.9 17 146-162 4-20 (27)
61 1j1d_C Troponin I, TNI; THIN f 24.2 3.1E+02 0.01 23.0 7.9 46 141-186 56-101 (133)
62 1x8y_A Lamin A/C; structural p 23.7 2.4E+02 0.0084 21.4 8.9 14 182-195 63-76 (86)
63 1fxk_A Prefoldin; archaeal pro 23.4 2.1E+02 0.0073 21.7 6.5 44 142-188 60-103 (107)
64 3mud_A DNA repair protein XRCC 22.4 4E+02 0.014 23.4 8.7 47 143-189 120-167 (175)
65 1l8d_A DNA double-strand break 21.7 2.1E+02 0.007 22.1 6.1 31 156-186 9-39 (112)
66 2dfs_A Myosin-5A; myosin-V, in 21.5 7.1E+02 0.024 27.3 12.2 31 157-187 984-1014(1080)
67 3m9b_A Proteasome-associated A 21.5 1.1E+02 0.0039 28.3 5.1 35 159-193 56-90 (251)
68 1wt6_A Myotonin-protein kinase 21.2 2.9E+02 0.01 21.4 7.7 19 169-187 50-68 (81)
69 1g6u_A Domain swapped dimer; d 21.0 2.1E+02 0.0072 19.7 5.1 31 141-175 15-45 (48)
70 1gd2_E Transcription factor PA 20.8 2.4E+02 0.0082 21.1 5.9 30 152-181 38-67 (70)
71 2aze_A Transcription factor DP 20.7 3.5E+02 0.012 23.4 7.7 44 145-189 4-47 (155)
72 3ilw_A DNA gyrase subunit A; D 20.6 3.5E+02 0.012 27.2 8.8 66 181-258 341-406 (470)
73 3oja_B Anopheles plasmodium-re 20.4 5.9E+02 0.02 24.7 13.2 22 241-262 561-582 (597)
74 3fpp_A Macrolide-specific effl 20.2 1.7E+02 0.0057 26.5 6.0 45 141-185 60-104 (341)
No 1
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.4e-46 Score=344.38 Aligned_cols=153 Identities=36% Similarity=0.573 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCC
Q 020069 152 LKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSN 231 (331)
Q Consensus 152 v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~ 231 (331)
+..++.+|+.+++++++++++|+|++|||+|||||++||++.+++||+++|+++||||+|||+||+.+.+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~--------- 131 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD--------- 131 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc---------
Confidence 44556667888999999999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeeee
Q 020069 232 DTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRP 311 (331)
Q Consensus 232 d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLRP 311 (331)
+..+++|++||+||+++|.++|.++||++|+++|++|||++|+||+++++++.++|||+.|+|+||+|+||||||
T Consensus 132 -----~~~~~~l~eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRp 206 (213)
T 4ani_A 132 -----NEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRP 206 (213)
T ss_dssp -----CSTHHHHHHHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSC
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeec
Confidence 123578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeec
Q 020069 312 AEVGVTQ 318 (331)
Q Consensus 312 A~VvVsK 318 (331)
|+|+|++
T Consensus 207 A~V~Va~ 213 (213)
T 4ani_A 207 AMVKVSQ 213 (213)
T ss_dssp EEEEEEC
T ss_pred eEEEeCC
Confidence 9999985
No 2
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=100.00 E-value=3.3e-46 Score=338.16 Aligned_cols=155 Identities=36% Similarity=0.555 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCC
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDP 229 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~ 229 (331)
..+++++++++++++ +++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+....
T Consensus 42 ~~~~~l~~~l~e~~~---~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~------ 112 (197)
T 1dkg_A 42 EKVANLEAQLAEAQT---RERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKA------ 112 (197)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccc------
Confidence 445555555544433 47789999999999999999999999999999999999999999999999864210
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeee
Q 020069 230 SNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVI 309 (331)
Q Consensus 230 s~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVL 309 (331)
++.+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||+.|+|+||+|+||||
T Consensus 113 -------~~~~~~l~~Gv~~~~~~l~~~L~~~Gv~~i~~~G~~FDP~~HeAv~~~~~~~~~~~tVv~v~qkGY~l~dRvL 185 (197)
T 1dkg_A 113 -------NPDMSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTI 185 (197)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHTTTTEEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEE
T ss_pred -------cchHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhheeeeecCCCCCcCeEEEEeeCCeeeCCEEe
Confidence 1235789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEeecCC
Q 020069 310 RPAEVGVTQAV 320 (331)
Q Consensus 310 RPA~VvVsK~~ 320 (331)
|||+|+|++++
T Consensus 186 RpA~V~V~~~~ 196 (197)
T 1dkg_A 186 RAAMVTVAKAK 196 (197)
T ss_dssp ECEEEEEEECC
T ss_pred cceEEEecCCC
Confidence 99999999854
No 3
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=100.00 E-value=1e-46 Score=336.76 Aligned_cols=151 Identities=32% Similarity=0.480 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCC
Q 020069 151 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPS 230 (331)
Q Consensus 151 ~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s 230 (331)
.+..+++.++.+++++++++++|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+...
T Consensus 20 e~~~l~~~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~-------- 91 (177)
T 3a6m_A 20 EAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLPVLDDLDRALEFAEA-------- 91 (177)
T ss_dssp HHSSTTTSTTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc--------
Confidence 333344456667788899999999999999999999999999999999999999999999999999986432
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCcccCeeeeeccCCCCCCCceeEEeecceeeCCeeee
Q 020069 231 NDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIR 310 (331)
Q Consensus 231 ~d~~~~~~~lk~l~eGVemi~kqL~~vL~k~GVe~IdpvGepFDPn~HEAV~~v~s~d~~~gTVveVvqkGY~L~dRVLR 310 (331)
..++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++ ++|||++|+|+||+|+|||||
T Consensus 92 --------~~~~l~~Gv~m~~~~l~~~L~k~Gv~~i~~~Ge~FDP~~HeAv~~~~~---~~gtVv~v~qkGY~l~dRvLR 160 (177)
T 3a6m_A 92 --------SPESIRQGVRAIRDGFFRILAGLGVEEVPGEGEAFDPRYHEAVGLLPG---EPGKVAKVFQRGFRMGEALVR 160 (177)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHTTCEECCCTTSBCCTTTEEEEEEEES---STTBEEEEEECCEEETTEEEE
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHhhhhhcccC---CcCeEEEEeecCeeeCCEEec
Confidence 146899999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred eeEEEeecCC
Q 020069 311 PAEVGVTQAV 320 (331)
Q Consensus 311 PA~VvVsK~~ 320 (331)
||+|+|++++
T Consensus 161 pA~V~V~~~~ 170 (177)
T 3a6m_A 161 PARVAVGEEK 170 (177)
T ss_dssp CEEEEEEECC
T ss_pred CeEEEEeCCC
Confidence 9999999966
No 4
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.11 E-value=4.2 Score=28.69 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 155 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 195 (331)
Q Consensus 155 ~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak 195 (331)
+|+.+..++.-++-|+.++.|+.|||+....++.+-+....
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788899999999999999999988887666543
No 5
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=82.46 E-value=10 Score=29.30 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 155 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKF 197 (331)
Q Consensus 155 ~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~ 197 (331)
+++.+..++.-++-|+-++.|++|+|+....++.+-+..+..+
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777888999999999999999999998877766554
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.91 E-value=33 Score=30.62 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHHhHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN--------------SK--KFAIQNFAKALLDVADNL 213 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~--------------ak--~~A~e~f~kdLLpVlDnL 213 (331)
.+.++++..|...++.+.+++.++.|+.-|.+.+|.+...-..+ .+ ......-+++|=-.-|+|
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45566666677777777777777777777777776666444332 11 122344455666677888
Q ss_pred HHhhhhh
Q 020069 214 GRASSVV 220 (331)
Q Consensus 214 ERAl~~~ 220 (331)
+|+..+.
T Consensus 122 Er~~R~~ 128 (189)
T 2v71_A 122 ERAKRAT 128 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 7
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=74.79 E-value=6.6 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.277 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSF 177 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~ 177 (331)
+++.++|...+.....++.+-+++|.+++.++.-+.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999988899998999998887765443
No 8
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.79 E-value=36 Score=27.96 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHhhhhh
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKK--FAIQNFAKALLDVADNLGRASSVV 220 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~--~A~e~f~kdLLpVlDnLERAl~~~ 220 (331)
|...++......+.-+++.|+.+|.....+--...-.+++|+...+. .-...-+++|=-.-|+|+|+-.+.
T Consensus 3 k~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 3 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 45566666777788899999999999999988888888888877665 445667788888899999997654
No 9
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=72.22 E-value=14 Score=30.91 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
|.+..+...+++++++.||+.|+.++.-+.|+.+-+|+-.+
T Consensus 62 L~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 62 LDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 33434444455777888888888888888888888777654
No 10
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=71.61 E-value=9.8 Score=29.44 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=27.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 173 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~ 173 (331)
..++++||.+++-.++.+|..++.++.+|+|-+
T Consensus 12 ~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYI 44 (75)
T 3tso_C 12 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYI 44 (75)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999988888877777776543
No 11
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.47 E-value=40 Score=27.79 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 181 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfE 181 (331)
+..++|...+...++.|.++..++++++....+..++.|
T Consensus 24 ~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE 62 (110)
T 2v4h_A 24 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 62 (110)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888888888776666555443
No 12
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=69.66 E-value=18 Score=27.74 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
..+|...+.++.++|..+++.|+++..++...-+++.+++.-+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777766666666666655555555554433
No 13
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=66.53 E-value=44 Score=26.81 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 181 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfE 181 (331)
+..++|...+...++.|..++.++++|++...+..++.+
T Consensus 2 ~~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E 40 (94)
T 3jsv_C 2 MQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVME 40 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 346677777777777777777777777776665555443
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=58.31 E-value=83 Score=32.33 Aligned_cols=11 Identities=0% Similarity=0.093 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 020069 174 LRSFAEMENVK 184 (331)
Q Consensus 174 lR~~AEfEN~R 184 (331)
.+...+.++|-
T Consensus 77 sKnsKdseqy~ 87 (562)
T 3ghg_A 77 QKNNKDSHSLT 87 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HhhchhHHHHH
Confidence 44444444443
No 15
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.84 E-value=48 Score=22.97 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020069 168 QMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 168 elkdk~lR~~AEfEN~RKR~~ 188 (331)
.-+|-..++..++.|+||..+
T Consensus 28 hkkdliaylekeianlrkkie 48 (49)
T 3he5_A 28 HKKDLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHhc
Confidence 334556677778888887653
No 16
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=55.30 E-value=19 Score=27.54 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 151 LLKEREELLMAKNEEMKQMQDKVLRSFAEMENVK 184 (331)
Q Consensus 151 ~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~R 184 (331)
.+..+++.++.+++++.+..+.+..++-+++.||
T Consensus 34 ELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 34 ELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666666666664
No 17
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=52.99 E-value=1.4e+02 Score=27.45 Aligned_cols=61 Identities=10% Similarity=0.124 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhh
Q 020069 161 AKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVK 221 (331)
Q Consensus 161 ~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~ 221 (331)
.++.|+-...-..+-+-|.+.|++|+.-||.-.++-.|+..+...+.=+...=.+.+..++
T Consensus 135 ~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f~Al~E~aEK~~ila~~gk~Ll~lld 195 (234)
T 3plt_A 135 VLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMFDSLRELSEKFALIAGYGKALLELLD 195 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444444444556678999999999999999999999999998877765555555554
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.21 E-value=76 Score=26.60 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 150 KLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 150 k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
.....++.+++.+.+++.+|+..+..++-..++.++...+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~ 114 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKE 114 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777777777766655444
No 19
>2gzd_C RAB11 family-interacting protein 2; G protein folds, A-helical coiled coil, protein transport; HET: GTP; 2.44A {Homo sapiens} SCOP: h.1.31.1 PDB: 2gzh_B* 2k6s_A
Probab=50.72 E-value=6 Score=32.44 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=9.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKV 173 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~ 173 (331)
..++.+||.+++-+++++|..++.++.+|+|-+
T Consensus 44 ~~lTrdELI~lllk~e~~l~~kd~~IrELEDYI 76 (107)
T 2gzd_C 44 RSLTYEEVLQELVKHKELLRRKDTHIRELEDYI 76 (107)
T ss_dssp -------------------CCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999988887777777666543
No 20
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=49.98 E-value=49 Score=25.28 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=41.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSK 195 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak 195 (331)
.+..+++...+.++|.++.-.+.-+++|.+-+.+.+.+++-+++++..=.++.+
T Consensus 6 ~~~~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 6 SPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888999999888888999999888888888888887766444443
No 21
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.21 E-value=1.2e+02 Score=27.11 Aligned_cols=64 Identities=30% Similarity=0.292 Sum_probs=40.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVA 210 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVl 210 (331)
.++-...|+-.+..+.++|+.+..|++.++.++.-+.++..-+.-+..++.+.+ .+.+||+..+
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i------~i~~DL~e~L 81 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENS------EVIKDLYEYL 81 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh------hHHHHHHHHc
Confidence 345566677777777777888888888888777777777655555554444443 3555555444
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=46.62 E-value=1.6e+02 Score=26.36 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAE 192 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e 192 (331)
.++|...++.+...+..++.++++++..+.++..+.+.++.|..+...
T Consensus 34 l~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 34 LDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555556666666666666666666666555544433
No 23
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=45.59 E-value=1.3e+02 Score=24.93 Aligned_cols=37 Identities=14% Similarity=0.182 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 020069 169 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRAS 217 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl 217 (331)
+++.|..+.+++.++++-+++++.... .++|+|+++-
T Consensus 69 yk~~y~~l~k~Y~~~~keLd~~ik~qe------------kiIdnFE~ik 105 (119)
T 3etw_A 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKIQ 105 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
Confidence 355677777777777777766655443 4789999764
No 24
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.21 E-value=33 Score=24.44 Aligned_cols=28 Identities=32% Similarity=0.176 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDK 172 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk 172 (331)
.+.|+..++++..++..+.+++++++.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555443
No 25
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=44.53 E-value=1.2e+02 Score=25.41 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
+.|...++++++++..++.++..++.++--+..+.+.++++.
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~ 119 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEI 119 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444443
No 26
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=43.06 E-value=83 Score=21.99 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 193 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ 193 (331)
.+...+.+..+.....+.++..++.++-++.+++.++|..+.+-..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556555666677777778888888888888888777655443
No 27
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.65 E-value=1.4e+02 Score=23.94 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRS---FAEMENVKDRTIREAENS 194 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~---~AEfEN~RKR~~rE~e~a 194 (331)
..-+.+...+..++..+...+.++..|.+.+.+. +.+.+.-++++..|+++.
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeL 59 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 59 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666554432 334445555555555544
No 28
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=40.51 E-value=62 Score=26.97 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 020069 169 MQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERA 216 (331)
+++.|.-+...|.++++-+.+++.... .|+|||+..
T Consensus 69 yK~eY~~L~KkYk~~~~~Ld~eI~~qe------------~iI~nFe~I 104 (119)
T 2avr_X 69 YKSQYQELASKYEDALKKLEAEMEQQK------------AVISDFEKI 104 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHH
Confidence 356777888888888888877766544 367777754
No 29
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.46 E-value=91 Score=24.24 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
++++.....+...+.++..+..++.++++++..+..+.+.++.+..
T Consensus 57 l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 57 LTDEHREELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555556666666666666655555555555544444
No 30
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=40.31 E-value=78 Score=26.40 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 149 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 149 ~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.+++++++.+|+.+..++.+...++-|++++.+-+.-|+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 345666666666666666666666666666666554444
No 31
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=40.05 E-value=1.2e+02 Score=23.03 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAK 204 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~k 204 (331)
+.+...++-..++...+++..+++.-.....-...|.+.+..|+ -.+..|+.+++.
T Consensus 9 l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1uix_A 9 LANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 33334444444444444444444444444444456777777776 677777777764
No 32
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=39.98 E-value=99 Score=24.76 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=32.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
.-+|.++|.++..+++..|..++.+.+.-..++.-++|-++..-|-+.
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 346788888888888888888777776666665556666555544443
No 33
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=39.63 E-value=1.3e+02 Score=24.34 Aligned_cols=47 Identities=21% Similarity=0.216 Sum_probs=37.4
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.+++.++|..++.++=..|..++++-=++..++.+.--|+.-++.|.
T Consensus 40 d~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV 86 (106)
T 1j1d_B 40 DHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRI 86 (106)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHH
Confidence 46889999999999888888888887777777777777777776664
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.70 E-value=1.8e+02 Score=26.02 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeeeC
Q 020069 242 SLLEGVEMTEKQLGEVFKKFGVEKFD 267 (331)
Q Consensus 242 ~l~eGVemi~kqL~~vL~k~GVe~Id 267 (331)
.++.-++.+.+.. ...||.++.
T Consensus 176 ~lL~~Yerir~~~----~g~avv~v~ 197 (256)
T 3na7_A 176 KIYSFYERIRRWA----KNTSIVTIK 197 (256)
T ss_dssp HHHHHHHHHHHHH----GGGSEEECB
T ss_pred HHHHHHHHHHHhC----CCceEEEee
Confidence 4556666666544 356777765
No 35
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.76 E-value=1.1e+02 Score=29.70 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=8.9
Q ss_pred HHHHHHHHhCCCeee
Q 020069 252 KQLGEVFKKFGVEKF 266 (331)
Q Consensus 252 kqL~~vL~k~GVe~I 266 (331)
..+..+|..+.+..|
T Consensus 131 ~lv~~~l~G~N~tif 145 (403)
T 4etp_A 131 QLVQSSLDGYNVAIF 145 (403)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHhCCcceEEE
Confidence 455666766665554
No 36
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.11 E-value=1.3e+02 Score=22.66 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020069 178 AEMENVKDRTIREAENSK 195 (331)
Q Consensus 178 AEfEN~RKR~~rE~e~ak 195 (331)
.++=|+|-++..|+...+
T Consensus 36 q~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 36 QELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344466666666666555
No 37
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=36.99 E-value=50 Score=24.88 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQD 171 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkd 171 (331)
+++.+.+..+++.+.+++..+.+..+
T Consensus 14 e~~~~~i~~Kde~I~eLE~~L~~kd~ 39 (67)
T 1zxa_A 14 EDFAKILMLKEERIKELEKRLSEKEE 39 (67)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444333
No 38
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.88 E-value=58 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
.+.++.|+++|+.++..+.+..+-+++|+.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566667777777777777777776654
No 39
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=35.90 E-value=44 Score=27.84 Aligned_cols=9 Identities=44% Similarity=0.508 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 020069 171 DKVLRSFAE 179 (331)
Q Consensus 171 dk~lR~~AE 179 (331)
+++.+++.+
T Consensus 32 ~~v~~l~~e 40 (171)
T 2zvf_A 32 KTVERFFEE 40 (171)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 40
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.06 E-value=1.6e+02 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 185 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RK 185 (331)
|...|...-+.+..++-++++|+++...+..+.+..+.
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444445566677888888887777777776554
No 41
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.83 E-value=1.5e+02 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020069 166 MKQMQDKVLRSFAEMENVKDR 186 (331)
Q Consensus 166 l~elkdk~lR~~AEfEN~RKR 186 (331)
+..-++.+.++...+++.+++
T Consensus 53 l~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 53 ISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444443333
No 42
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=33.07 E-value=1.4e+02 Score=24.26 Aligned_cols=47 Identities=21% Similarity=0.237 Sum_probs=36.0
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.+++.++|..++.++=..|..++++-=++..++.+.--|+.-++.|.
T Consensus 40 d~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 40 DHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRI 86 (107)
T ss_dssp SSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 45788899999999888888888877777777777767766666654
No 43
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.76 E-value=67 Score=30.85 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 147 DLVKLLKEREELLMAKNEEMKQMQ 170 (331)
Q Consensus 147 eL~k~v~e~ee~L~~~~~El~elk 170 (331)
.|.+.+.+.++.+..++++.....
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~ 424 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAATAN 424 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc
Confidence 345555555555555555544433
No 44
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.53 E-value=1.2e+02 Score=20.73 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEME 181 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfE 181 (331)
.+|+.-+++ |++..++++.+++-+.-+.|+++
T Consensus 6 kelknyiqe----leernaelknlkehlkfakaele 37 (46)
T 3he4_B 6 KELKNYIQE----LEERNAELKNLKEHLKFAKAELE 37 (46)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHhHHHHhHHHHHHHHHHHHH
Confidence 344444444 33345666677776666666654
No 45
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=31.98 E-value=1.7e+02 Score=22.24 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 020069 148 LVKLLKEREELLMAKNEEMKQMQDKVLRSF-AEME----NVKDRTIREAENSKKFAIQNFAK 204 (331)
Q Consensus 148 L~k~v~e~ee~L~~~~~El~elkdk~lR~~-AEfE----N~RKR~~rE~e~ak~~A~e~f~k 204 (331)
|.+.+..+..+.+++..+++...+.+.++. .+.+ .|.+.+..|+ -.+..|+.+++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~~lek~L~~E~-~LK~QAVNKLAE 64 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTER-TLKTQAVNKLAE 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 444444444444445555555555544443 3344 5666666666 566677776654
No 46
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=31.70 E-value=1.5e+02 Score=29.02 Aligned_cols=15 Identities=7% Similarity=0.264 Sum_probs=7.6
Q ss_pred HHHHHHHHhCCCeee
Q 020069 252 KQLGEVFKKFGVEKF 266 (331)
Q Consensus 252 kqL~~vL~k~GVe~I 266 (331)
..+..+|..+.+..|
T Consensus 129 plv~~~l~G~n~tif 143 (412)
T 3u06_A 129 PLIQSALDGYNICIF 143 (412)
T ss_dssp HHHHHHHTTCCEEEE
T ss_pred HHHHHHHCCCceEEE
Confidence 344555555555443
No 47
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=31.25 E-value=1.4e+02 Score=21.31 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 020069 177 FAEMENVKDRTIREAENSKK 196 (331)
Q Consensus 177 ~AEfEN~RKR~~rE~e~ak~ 196 (331)
+.++=|+|-++..|+...++
T Consensus 30 Yq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 30 VGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444666666666655553
No 48
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=30.81 E-value=68 Score=21.51 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQ 170 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elk 170 (331)
.+.|.+.+..+.+++..++++..+|+
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34566666666666666655555543
No 49
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=30.61 E-value=78 Score=23.79 Aligned_cols=33 Identities=12% Similarity=0.244 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 155 REELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 155 ~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
+++.++.++.++.++......+.++.+-+|..+
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544444444444444433
No 50
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.28 E-value=1.4e+02 Score=23.11 Aligned_cols=45 Identities=11% Similarity=0.221 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
..+.+++...+.+. ++.++.+++.+..++......+.+++..+..
T Consensus 65 ~~~~~ea~~~L~~~---~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 65 KTTKDKAVAELKEK---IETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp EECHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666555553 4445677777887877888888777766654
No 51
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A {Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Probab=30.24 E-value=40 Score=27.42 Aligned_cols=50 Identities=2% Similarity=0.077 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 020069 167 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRA 216 (331)
Q Consensus 167 ~elkdk~lR~~AEfEN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERA 216 (331)
......+.....+|..+++..+++...........+...+-+++..+...
T Consensus 63 ~~~~~el~~~~~~~q~~~~~~~~~l~~~~~~~~~~i~~~i~~ai~~vak~ 112 (143)
T 1u2m_A 63 TKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANS 112 (143)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777888888888888888888887777777777777666544
No 52
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=28.83 E-value=1.2e+02 Score=29.47 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 020069 182 NVKDRTIREAENS 194 (331)
Q Consensus 182 N~RKR~~rE~e~a 194 (331)
..||++-.++++.
T Consensus 45 ~~rr~l~n~~~el 57 (403)
T 4etp_A 45 TVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 4455555554444
No 53
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.77 E-value=95 Score=25.14 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDDLVKLLKEREELLMAKNEEMKQMQDKVL 174 (331)
Q Consensus 143 ls~deL~k~v~e~ee~L~~~~~El~elkdk~l 174 (331)
.+.+++.+.+....++++.++.++..++.++.
T Consensus 82 ~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 82 LTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777666655555555555555544433
No 54
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=28.63 E-value=2.7e+02 Score=24.51 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=13.2
Q ss_pred ccCCHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREE 157 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee 157 (331)
..||.+++.+.+++.++
T Consensus 117 ~~Ls~eeI~~m~~~a~~ 133 (219)
T 4e81_A 117 SGLNEDEIQKMVRDAEA 133 (219)
T ss_dssp CSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH
Confidence 35999999988877544
No 55
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.04 E-value=1.9e+02 Score=23.04 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 020069 167 KQMQDKVLRSFAEMENVK 184 (331)
Q Consensus 167 ~elkdk~lR~~AEfEN~R 184 (331)
+.|+++...+..++++|.
T Consensus 74 K~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 74 KLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 56
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=27.89 E-value=1.7e+02 Score=22.95 Aligned_cols=50 Identities=8% Similarity=0.149 Sum_probs=35.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIRE 190 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE 190 (331)
..+++.+|..-+...-+..-.+=.++..+-+.+.+...+|-|+||+.-++
T Consensus 42 ~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~~~d 91 (93)
T 3t98_B 42 SHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMFLGD 91 (93)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778888877777666666666677777777777777888888876443
No 57
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=27.77 E-value=1.9e+02 Score=22.76 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 161 AKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 161 ~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.+..+++.++....+...+.+.|+.+.
T Consensus 59 ~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 59 QLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 58
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=26.92 E-value=1.8e+02 Score=22.37 Aligned_cols=27 Identities=4% Similarity=0.081 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 158 LLMAKNEEMKQMQDKVLRSFAEMENVK 184 (331)
Q Consensus 158 ~L~~~~~El~elkdk~lR~~AEfEN~R 184 (331)
+|++++.+..+|++++..+..+++.-|
T Consensus 14 klq~~E~rN~~Le~~v~~le~~Le~s~ 40 (79)
T 3cvf_A 14 KVQDLETRNAELEHQLRAMERSLEEAR 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344455555566666666666655554
No 59
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.99 E-value=2.2e+02 Score=22.03 Aligned_cols=26 Identities=4% Similarity=0.026 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQ 170 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elk 170 (331)
..+++..++-+..++++++.+...+.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444544444444433
No 60
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.57 E-value=1.2e+02 Score=18.70 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020069 146 DDLVKLLKEREELLMAK 162 (331)
Q Consensus 146 deL~k~v~e~ee~L~~~ 162 (331)
|+|-+.++.+++.|.++
T Consensus 4 delykeledlqerlrkl 20 (27)
T 3twe_A 4 DELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555544444444433
No 61
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=24.21 E-value=3.1e+02 Score=23.02 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=33.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 186 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR 186 (331)
.+++.++|...+.++=..|..++++-=++..++.+.--|+..++.|
T Consensus 56 d~ls~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~r 101 (133)
T 1j1d_C 56 AGLGFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQK 101 (133)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHH
Confidence 3578899988888888888777777666766666666666666555
No 62
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=23.70 E-value=2.4e+02 Score=21.43 Aligned_cols=14 Identities=14% Similarity=0.022 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHH
Q 020069 182 NVKDRTIREAENSK 195 (331)
Q Consensus 182 N~RKR~~rE~e~ak 195 (331)
|+|-++..|+...+
T Consensus 63 nvK~~Le~EIatYR 76 (86)
T 1x8y_A 63 DIKLALDMEIHAYR 76 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH
Confidence 45555555555444
No 63
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.36 E-value=2.1e+02 Score=21.68 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 142 ELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 188 (331)
Q Consensus 142 ~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~ 188 (331)
..+.+++...+... ++.++.+++.+..++......+++++..+.
T Consensus 60 ~~~~~e~~~~L~~~---~e~i~~~i~~le~~~~~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 60 RVAKDELTEELQEK---LETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp EECHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666555553 444566777777777777777777776553
No 64
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.35 E-value=4e+02 Score=23.40 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 143 LSRDD-LVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 143 ls~de-L~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
.++.+ +..++.-.+.....++++++.|++++.+...++.++++-+.+
T Consensus 120 ~~paE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 120 ENPAEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555 455666666667777777777777776666666665554443
No 65
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.67 E-value=2.1e+02 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.164 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 156 EELLMAKNEEMKQMQDKVLRSFAEMENVKDR 186 (331)
Q Consensus 156 ee~L~~~~~El~elkdk~lR~~AEfEN~RKR 186 (331)
++.+..+..++.+++..........+.+++.
T Consensus 9 ~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~ 39 (112)
T 1l8d_A 9 ETKKTTIEEERNEITQRIGELKNKIGDLKTA 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433
No 66
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.53 E-value=7.1e+02 Score=27.31 Aligned_cols=31 Identities=10% Similarity=0.331 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 157 ELLMAKNEEMKQMQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 157 e~L~~~~~El~elkdk~lR~~AEfEN~RKR~ 187 (331)
.+++.++++++++++.+.++..|.+.+..+.
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554443
No 67
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.48 E-value=1.1e+02 Score=28.31 Aligned_cols=35 Identities=3% Similarity=0.179 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 159 LMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAEN 193 (331)
Q Consensus 159 L~~~~~El~elkdk~lR~~AEfEN~RKR~~rE~e~ 193 (331)
++.++.++..+..+..|+.++..++|+.+.+-+++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeE 90 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREE 90 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444333
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=21.16 E-value=2.9e+02 Score=21.43 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 020069 169 MQDKVLRSFAEMENVKDRT 187 (331)
Q Consensus 169 lkdk~lR~~AEfEN~RKR~ 187 (331)
.+.+..-+.++++++++++
T Consensus 50 ae~rn~eL~~e~~~l~~~~ 68 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERM 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444443
No 69
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.98 E-value=2.1e+02 Score=19.66 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=19.3
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLR 175 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR 175 (331)
.+.|+++|..+..+ |..+++.+..++.+++-
T Consensus 15 egfspeelaalese----lqalekklaalksklqa 45 (48)
T 1g6u_A 15 EGFSPEELAALESE----LQALEKKLAALKSKLQA 45 (48)
T ss_dssp TTCSHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34677776655444 55566677777766543
No 70
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.80 E-value=2.4e+02 Score=21.08 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 152 LKEREELLMAKNEEMKQMQDKVLRSFAEME 181 (331)
Q Consensus 152 v~e~ee~L~~~~~El~elkdk~lR~~AEfE 181 (331)
+.+++.....+..+...|+..+..+..+..
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444433
No 71
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=20.67 E-value=3.5e+02 Score=23.36 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 145 RDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIR 189 (331)
Q Consensus 145 ~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RKR~~r 189 (331)
..++.++.+++...++..++..+.|+ .+...+..|.|+.+|-+.
T Consensus 4 ~qe~~~Le~Ek~~~~~rI~~K~~~Lq-eL~~Q~vafknLv~RN~~ 47 (155)
T 2aze_A 4 AQECQNLEVERQRRLERIKQKQSQLQ-ELILQQIAFKNLVQRNRH 47 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333322222 233456678888777643
No 72
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=20.64 E-value=3.5e+02 Score=27.20 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhcccCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 020069 181 ENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVF 258 (331)
Q Consensus 181 EN~RKR~~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~ski~~s~d~~~~~~~lk~l~eGVemi~kqL~~vL 258 (331)
+=|+||++-++..+.+.+ .++..|+-++|+++.++..+..+ .+ .......|.+.+.++..|...+|
T Consensus 341 ~~~~rR~~~~L~k~~~r~--hilegl~~a~~~iD~vI~iIr~s-------~~---~~~a~~~L~~~f~lse~Qa~aIl 406 (470)
T 3ilw_A 341 DVIVRRTTYRLRKANERA--HILRGLVKALDALDEVIALIRAS-------ET---VDIARAGLIELLDIDEIQAQAIL 406 (470)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHTHHHHHHHHHHC-------SS---HHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhC-------CC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 446777777776666553 55777777788888888765431 11 11234566677777777766666
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.42 E-value=5.9e+02 Score=24.67 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC
Q 020069 241 KSLLEGVEMTEKQLGEVFKKFG 262 (331)
Q Consensus 241 k~l~eGVemi~kqL~~vL~k~G 262 (331)
..+.+-+..+..++.+.+++..
T Consensus 561 ~~l~~e~~~~~~~~~~l~~~~~ 582 (597)
T 3oja_B 561 AELRQETSLKRQKVKQLEAKKN 582 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555555556666655543
No 74
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.22 E-value=1.7e+02 Score=26.49 Aligned_cols=45 Identities=13% Similarity=0.103 Sum_probs=26.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020069 141 IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKD 185 (331)
Q Consensus 141 ~~ls~deL~k~v~e~ee~L~~~~~El~elkdk~lR~~AEfEN~RK 185 (331)
..+...++...+...+..|..++.++...+..+..+..+++.+++
T Consensus 60 ~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~ 104 (341)
T 3fpp_A 60 GVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQR 104 (341)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred EEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666555555555555554444
Done!