BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020070
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WVQ|A Chain A, Structure Of The Het-S N-Terminal Domain. Mutant D23a,
P33h
pdb|2WVQ|B Chain B, Structure Of The Het-S N-Terminal Domain. Mutant D23a,
P33h
Length = 225
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 114 EASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKL-----FPADVQIQSIYPLP 168
EA D+P + D K +QL SI E+ L+F K AD Q ++
Sbjct: 61 EAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVVFEDK 120
Query: 169 DVSELETKLSEQSKILLNLQQKVTDLASKHAY 200
D+ + L + L++ +QK T LA K A+
Sbjct: 121 DMKPIGRALHRRLNDLVSRRQKQTSLAKKTAW 152
>pdb|2WVO|A Chain A, Structure Of The Het-S N-Terminal Domain
pdb|2WVO|B Chain B, Structure Of The Het-S N-Terminal Domain
Length = 233
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 114 EASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKL-----FPADVQIQSIYPLP 168
EA D+P + + K +QL SI E+ L+F K AD Q ++
Sbjct: 57 EAVQINDDPRFHSSAPIDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVVFEDK 116
Query: 169 DVSELETKLSEQSKILLNLQQKVTDLASKHAY 200
D+ + L + K L++ +QK T LA K A+
Sbjct: 117 DMKPIGRALHRRLKDLVSRRQKQTSLAKKTAW 148
>pdb|2WVN|A Chain A, Structure Of The Het-S N-Terminal Domain
Length = 229
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 114 EASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKL-----FPADVQIQSIYPLP 168
EA D+P + D K +QL SI E+ L+F K AD Q ++
Sbjct: 59 EAVKINDDPRFHSDAPTDKSVQLAKSIVEEILLLFESAQKTSKRYELVADQQDLVVFEDK 118
Query: 169 DVSELETKLSEQSKILLNLQQKVTDLASKHAY 200
D+ + L + L++ +QK T LA K A+
Sbjct: 119 DMKPIGRALHRRLNDLVSRRQKQTSLAKKTAW 150
>pdb|3LN7|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
pdb|3LN7|B Chain B, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
Length = 757
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 18 YPRANAPAQSLLFAGMERY--SLLEWL-FFKLLGDKSPFSQQNLQGDAMDRDEETARIQY 74
Y N P ++ F +E+Y SL W+ KL+ +K +S L+G R+ T IQY
Sbjct: 224 YGYVNDPEINVSFDSVEKYVESLEHWVSTGKLIAEKEFYSNVRLRGAKKAREFLTTGIQY 283
Query: 75 L 75
L
Sbjct: 284 L 284
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 181 SKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTK 233
S++LL++ +TD +P EV + LRA+ + F +TAR + +Y +
Sbjct: 103 SRVLLSISSLLTDPNPSDPLDP-----EVANVLRANKKQFEDTAREWTRMYAR 150
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 98 SYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPA 157
S E R+++L I D ++A+ +A ID VAK+ L DS+ ++ LF
Sbjct: 34 SNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLLKR--------LDLFKG 85
Query: 158 DVQIQSIYPLPDVSELE 174
D + + DV+ELE
Sbjct: 86 DKFEVXLQGIKDVAELE 102
>pdb|1LKI|A Chain A, The Crystal Structure And Biological Function Of Leukemia
Inhibitory Factor: Implications For Receptor Binding
Length = 180
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 206 YAEVESQLRAHLESFLETART-FNTIYTKEIRPWTH---------MMEVPQLHGFGPAAN 255
+ + +Q++ L +A F + YT + P+ + M + P HG G
Sbjct: 19 HGNLMNQIKNQLAQLNGSANALFISYYTAQGEPFPNNVEKLCAPNMTDFPSFHGNGTEKT 78
Query: 256 RLLEAYKMLLKFLGNLRNL-RD 276
+L+E Y+M+ +L N+ RD
Sbjct: 79 KLVELYRMVAYLSASLTNITRD 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,490,117
Number of Sequences: 62578
Number of extensions: 318133
Number of successful extensions: 828
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 11
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)