BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020070
         (331 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P44496|RECN_HAEIN DNA repair protein RecN OS=Haemophilus influenzae (strain ATCC
           51907 / DSM 11121 / KW20 / Rd) GN=recN PE=3 SV=1
          Length = 558

 Score = 36.2 bits (82), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 117 IYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQIQSIYPLPDVSELETK 176
           I ++N   +ID  + +  Q ID +AE        +  L  A +Q+Q      +V  L + 
Sbjct: 236 ILSENDTVNIDSLLYRATQYIDELAELDPQYAEVQNMLNDALIQVQE--ATSEVQNLSSN 293

Query: 177 LSEQSKILLNLQQKVT---DLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTK 233
           + +  ++L  ++Q+++    LA KH   P ED  E   +L+A L + L+ + +   +  +
Sbjct: 294 IEQDPQLLQEIEQRISQTLQLARKHQVKP-EDLVEQHKKLKAELTALLDFSESEEMLIEQ 352

Query: 234 EIRPWTHM 241
           E R +  M
Sbjct: 353 EKRAFEQM 360


>sp|Q3AHP0|MURD_SYNSC UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechococcus
           sp. (strain CC9605) GN=murD PE=3 SV=1
          Length = 461

 Score = 36.2 bits (82), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 71  RIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIY-ADNPE------ 123
           +I+    +A  +GI TT+  + ++ HGS E    + R +++  E +++ AD+P+      
Sbjct: 175 QIEAAPAVAPKIGIWTTLTPDHLERHGSLEAYRAIKRGLLERSECALFNADDPDLRQQRS 234

Query: 124 ------WSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADV 159
                 W   E    D Q  D   + + ++ +   +LF ADV
Sbjct: 235 SWNRGTWVSSEGAHPDNQPADLWIDDEGMVRNNTTRLFAADV 276


>sp|C5D7C7|Y799_GEOSW UPF0477 protein GWCH70_0799 OS=Geobacillus sp. (strain WCH70)
           GN=GWCH70_0799 PE=3 SV=1
          Length = 173

 Score = 33.1 bits (74), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 122 PEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADV-QIQSIYPLPDVSELETKLSEQ 180
           P  ++ E    D Q I  I  K+    + E  + P  V +  S YP  +V  L+    E 
Sbjct: 33  PHLTLKEPFEADDQKIKEIV-KELRKIAAETDVIPLKVTKFSSFYPTSNVIYLKV---EP 88

Query: 181 SKILLNLQQKVTD--LASKHAYN-----------PDEDYAEVESQLRAHLESFLETARTF 227
           ++ L  L +++    LA K  Y            P+ +YA+V  QLR     F ET   F
Sbjct: 89  NETLERLHERLHSGILADKSEYVFVPHITIGRDLPNAEYADVYGQLRMQNVHFEETVDRF 148

Query: 228 NTIYTKEIRPWT 239
           + +Y  E   WT
Sbjct: 149 HLLYQLENGSWT 160


>sp|Q8EUJ9|SYFB_MYCPE Phenylalanine--tRNA ligase beta subunit OS=Mycoplasma penetrans
           (strain HF-2) GN=pheT PE=3 SV=2
          Length = 792

 Score = 32.3 bits (72), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 4/139 (2%)

Query: 186 NLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVP 245
           NL   +T +   HAY+ D+   E+   L AH E FL        +  K         ++ 
Sbjct: 260 NLNAIITSVPC-HAYDKDKLGKEIAVSLNAHKEKFLALNDKEYVVENKSAVSVISNNKIV 318

Query: 246 QLHG-FGPAANRLLEAYKMLLKFLGNLRNL--RDSHAALAIGSSETVAGEPSSVTRIISE 302
            L    G   N +  + K +L  +GN  N+  RD+   L I ++ +  G  +    I  +
Sbjct: 319 SLASVIGSKENSISNSTKNVLFEIGNFDNMAIRDASNKLGIKTNASTLGSKTIPLWITYK 378

Query: 303 CESALTFLNRDLSILSASI 321
               L  L +DL+I  +S+
Sbjct: 379 SFDYLIGLLKDLNIKVSSV 397


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,569,794
Number of Sequences: 539616
Number of extensions: 4115096
Number of successful extensions: 13181
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 13171
Number of HSP's gapped (non-prelim): 35
length of query: 331
length of database: 191,569,459
effective HSP length: 118
effective length of query: 213
effective length of database: 127,894,771
effective search space: 27241586223
effective search space used: 27241586223
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)