Query 020070
Match_columns 331
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:46:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06694 Plant_NMP1: Plant nuc 100.0 2E-103 4E-108 746.6 31.9 325 1-325 1-325 (325)
2 PF11348 DUF3150: Protein of u 83.0 11 0.00023 36.3 9.8 40 202-241 79-118 (257)
3 PF03801 Ndc80_HEC: HEC/Ndc80p 74.7 2.8 6.1E-05 37.3 2.9 43 3-46 91-139 (157)
4 PF10036 RLL: Putative carniti 56.1 13 0.00028 35.5 3.7 29 8-46 59-87 (249)
5 PLN03229 acetyl-coenzyme A car 53.7 21 0.00045 39.6 5.0 37 153-189 64-115 (762)
6 PF08651 DASH_Duo1: DASH compl 52.6 14 0.00031 29.7 2.8 56 263-322 2-57 (78)
7 PLN03230 acetyl-coenzyme A car 49.9 28 0.00061 36.3 5.1 25 165-189 70-94 (431)
8 PF15003 HAUS2: HAUS augmin-li 49.7 1.2E+02 0.0027 30.0 9.2 107 175-282 93-201 (277)
9 PRK10807 paraquat-inducible pr 49.1 2.6E+02 0.0056 29.8 12.2 67 207-293 472-542 (547)
10 PF08020 DUF1706: Protein of u 43.4 1.4E+02 0.0031 27.0 8.1 105 176-282 10-116 (166)
11 cd00176 SPEC Spectrin repeats, 42.1 2.1E+02 0.0045 24.0 10.8 54 216-272 101-156 (213)
12 KOG0948 Nuclear exosomal RNA h 41.9 1E+02 0.0022 35.0 7.9 95 174-314 931-1033(1041)
13 PF14894 Lsm_C: Lsm C-terminal 38.7 27 0.00059 27.5 2.3 20 247-266 41-60 (64)
14 PRK15365 type III secretion sy 38.0 1.9E+02 0.0041 24.9 7.4 59 175-233 19-95 (107)
15 PF11155 DUF2935: Domain of un 37.1 1.2E+02 0.0025 25.5 6.1 65 248-312 60-124 (124)
16 PHA03395 p10 fibrous body prot 35.7 65 0.0014 26.8 4.2 31 165-195 32-62 (87)
17 PF08653 DASH_Dam1: DASH compl 35.5 1.5E+02 0.0033 22.8 5.9 50 173-240 3-52 (58)
18 PF04136 Sec34: Sec34-like fam 35.4 3.2E+02 0.007 24.3 10.2 63 215-278 59-121 (157)
19 PF13949 ALIX_LYPXL_bnd: ALIX 34.0 4E+02 0.0087 25.0 13.7 44 226-281 190-233 (296)
20 PHA03155 hypothetical protein; 30.1 1.2E+02 0.0025 26.6 5.0 34 165-203 5-38 (115)
21 PF02185 HR1: Hr1 repeat; Int 28.7 2.6E+02 0.0057 21.2 6.3 62 254-329 3-64 (70)
22 cd07597 BAR_SNX8 The Bin/Amphi 28.5 5.1E+02 0.011 24.5 11.0 107 206-317 82-200 (246)
23 KOG0995 Centromere-associated 26.5 8.8E+02 0.019 26.6 19.6 42 4-46 125-171 (581)
24 PF15612 WHIM1: WSTF, HB1, Itc 26.4 69 0.0015 22.7 2.6 27 18-46 7-33 (50)
25 KOG2397 Protein kinase C subst 26.3 76 0.0017 33.6 3.8 66 170-256 339-404 (480)
26 PRK03947 prefoldin subunit alp 25.8 1.5E+02 0.0032 25.2 5.0 24 302-325 91-114 (140)
27 cd08323 CARD_APAF1 Caspase act 25.3 2.5E+02 0.0054 22.8 5.9 43 72-117 16-58 (86)
28 PHA02047 phage lambda Rz1-like 23.9 3.9E+02 0.0085 22.9 6.9 53 169-245 35-87 (101)
29 KOG3485 Uncharacterized conser 23.7 41 0.00089 27.8 1.1 16 142-158 67-82 (86)
30 PF05531 NPV_P10: Nucleopolyhe 23.1 1.5E+02 0.0033 24.0 4.2 32 166-197 33-64 (75)
31 cd07599 BAR_Rvs167p The Bin/Am 22.5 5.9E+02 0.013 23.2 11.2 51 169-234 3-53 (216)
32 PF03299 TF_AP-2: Transcriptio 22.1 4.2E+02 0.0091 24.9 7.6 39 208-247 125-163 (209)
33 PF10234 Cluap1: Clusterin-ass 22.1 1.3E+02 0.0028 29.6 4.3 62 15-86 2-64 (267)
34 PRK14079 recF recombination pr 21.3 71 0.0015 31.6 2.5 40 71-113 101-140 (349)
35 PF10239 DUF2465: Protein of u 20.9 8.5E+02 0.018 24.4 12.8 75 6-87 64-147 (318)
36 PF10496 Syntaxin-18_N: SNARE- 20.9 4.2E+02 0.0091 20.8 6.6 41 243-283 31-71 (87)
37 PF13339 AATF-Che1: Apoptosis 20.2 52 0.0011 27.8 1.1 21 91-112 1-21 (131)
No 1
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=100.00 E-value=1.6e-103 Score=746.60 Aligned_cols=325 Identities=78% Similarity=1.146 Sum_probs=322.5
Q ss_pred ChhhHHHHHHHHhhhcCCCCCcCcchhcccCchhhHHHHHHHHHhhcCCCCCchhhcccCCcCCCChHHHhHHHHHHHHH
Q 020070 1 MAAKQMEEIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAK 80 (331)
Q Consensus 1 ~~~~~~~ev~~kL~~L~CP~legl~~sLLcPs~~Rl~ILeWl~~Ri~~~~~P~~q~~~~~~~~~~~~~d~rIQelakl~~ 80 (331)
||+|||++|++||..||||+.++|.|||||.|++||++|||||+|++|||+|++|++++|++.+|+++++|||+|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Llf~G~~R~~Ll~WLF~rllg~~~p~~~q~lqg~~~~r~~~~~R~Q~L~~iA~ 80 (325)
T PF06694_consen 1 MASKQMEEIQKKLALLNYPRANAPAQSLLFAGEERYRLLQWLFFRLLGDKSPFTQQNLQGDHKDRDEEDSRIQYLLEIAS 80 (325)
T ss_pred CchhHHHHHHHHHHhccCCccCCcHHHHHHcchHHHHHHHHHHHHHcCCCChhHHHHHhccccccccchHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCchhhhccCCChhHHHHHHHHHHHHHHhhhcCCCCCcchHHHhhhhHHHHHHHHHHHHhhcCcccCCCCcchh
Q 020070 81 FLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASIYADNPEWSIDEQVAKDIQLIDSIAEKQALIFSEECKLFPADVQ 160 (331)
Q Consensus 81 eLmLC~~~D~dLIkG~as~~kQl~Fl~qLLDlV~s~~~~~~~~~s~~eq~~~n~~Ll~~l~~~lq~~lspec~~~P~D~q 160 (331)
+||||+++|.|+|||+||+++|++||++|+|+|+++.+.++++||++|||++|+.|+|.|+++++++|+++|++||+||+
T Consensus 81 ~LGl~~~~D~e~IqG~~s~e~~~~~l~~IVDlVeas~~~~n~e~Sl~eQ~~kD~~LiD~IaE~~~QvFs~~ckLFP~DVq 160 (325)
T PF06694_consen 81 FLGLCPTVDIEAIQGKCSYEKRAEFLRLIVDLVEASMYADNPEWSLDEQFAKDIQLIDAIAEKQQQVFSEECKLFPPDVQ 160 (325)
T ss_pred HhCCccccCHHHHhccCChhHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhHHHHHhhhcCcCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccC
Q 020070 161 IQSIYPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240 (331)
Q Consensus 161 ~~~~~~~p~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~ 240 (331)
+++++++||+++|++++.+.+++|+.||++++++++|++|+|++++.+..++||++|+.|.|++++|++||++|||+|||
T Consensus 161 i~S~~~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~y~pd~~~~e~~~~Lr~~L~tflq~~~~F~~~Y~~EIrpWch 240 (325)
T PF06694_consen 161 IQSIYPLPDVSELEKKASELSKQLQSLQQQVAELASKHPYNPDEEYVEKESQLRLELETFLQTAAGFNHCYEKEIRPWCH 240 (325)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccchHHHHHHHHHHHHHHHHHHHhhHhhhHhhhcCCCccccCCCcchhHHHHhhHHHHhhhhhhHHHHHHH
Q 020070 241 MMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSAS 320 (331)
Q Consensus 241 r~~~P~Lh~~GP~~q~V~q~l~~~~k~L~~L~~lr~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~il~~s 320 (331)
||++|+||++||+|+|||++|++++|+|+||+++|+||+|||+||.+++.+||+++++||++|++||+.|||+|+|||+|
T Consensus 241 ~~~~P~L~gLGPAa~Rlle~y~~l~klL~nL~~lr~Sh~ai~~gs~~t~s~e~~s~~~ivs~~e~al~~lnr~l~il~~s 320 (325)
T PF06694_consen 241 MMEVPQLHGLGPAANRLLELYKMLLKLLGNLATLRDSHAAIAAGSSPTTSDEPSSVTQIVSECETALTQLNRSLAILSAS 320 (325)
T ss_pred cCccchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCccHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHh
Q 020070 321 IARER 325 (331)
Q Consensus 321 ~~r~~ 325 (331)
|+|+|
T Consensus 321 ~~r~~ 325 (325)
T PF06694_consen 321 VAREQ 325 (325)
T ss_pred hhccC
Confidence 99986
No 2
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=83.00 E-value=11 Score=36.31 Aligned_cols=40 Identities=20% Similarity=0.440 Sum_probs=36.6
Q ss_pred CChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCC
Q 020070 202 PDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHM 241 (331)
Q Consensus 202 p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r 241 (331)
|.....++..+|..+-.+|.+....|+.-|+..+.+||++
T Consensus 79 P~~~~~~l~~~L~~i~~eF~~~k~~Fl~~Yd~~i~~w~~~ 118 (257)
T PF11348_consen 79 PEDKAEELAEELEDIKTEFEQEKQDFLANYDQAIEEWIDR 118 (257)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5557777889999999999999999999999999999998
No 3
>PF03801 Ndc80_HEC: HEC/Ndc80p family; InterPro: IPR005550 Members of this family are components of the mitotic spindle. It has been shown that Ndc80 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle.; PDB: 3IZ0_E 2VE7_B 2IGP_A.
Probab=74.73 E-value=2.8 Score=37.28 Aligned_cols=43 Identities=33% Similarity=0.376 Sum_probs=30.7
Q ss_pred hhHHHHHHHHhhhcCCCCCcCcchhccc-Cc-----hhhHHHHHHHHHhh
Q 020070 3 AKQMEEIQKKLAMLNYPRANAPAQSLLF-AG-----MERYSLLEWLFFKL 46 (331)
Q Consensus 3 ~~~~~ev~~kL~~L~CP~legl~~sLLc-Ps-----~~Rl~ILeWl~~Ri 46 (331)
.|--+||..-||.|+|||+ .+-.+-|. || .+=+.+|.||+--+
T Consensus 91 ~k~eeev~~~lK~L~YP~~-~isKS~L~a~gs~hsWP~lL~~L~WLv~l~ 139 (157)
T PF03801_consen 91 KKFEEEVPFLLKALGYPFA-TISKSSLQAPGSPHSWPHLLGALHWLVELI 139 (157)
T ss_dssp STHHHHHHHHHHHTT-SS-----HHHHHSTTSTTTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhCCCcc-ccCHHHccCCCCcccHHHHHHHHHHHHHHH
Confidence 3667899999999999999 88888666 54 34599999998766
No 4
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=56.07 E-value=13 Score=35.49 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=24.4
Q ss_pred HHHHHhhhcCCCCCcCcchhcccCchhhHHHHHHHHHhh
Q 020070 8 EIQKKLAMLNYPRANAPAQSLLFAGMERYSLLEWLFFKL 46 (331)
Q Consensus 8 ev~~kL~~L~CP~legl~~sLLcPs~~Rl~ILeWl~~Ri 46 (331)
.+.+-|++|+||+ .+..|.++|+||.+..
T Consensus 59 ~~~kYl~dl~cP~----------~~~~~~~~ldWLL~~A 87 (249)
T PF10036_consen 59 AFEKYLKDLGCPF----------SSESRQEQLDWLLGLA 87 (249)
T ss_pred HHHHHHHhcCCCC----------cchhHHHHHHHHHHHH
Confidence 3456689999999 6778999999999876
No 5
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=53.69 E-value=21 Score=39.60 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCCCcchhhh---------------ccCCCCChHHHHHHHHHHHHHHHHHHH
Q 020070 153 KLFPADVQIQ---------------SIYPLPDVSELETKLSEQSKILLNLQQ 189 (331)
Q Consensus 153 ~~~P~D~q~~---------------~~~~~p~v~eL~~qLqe~~~~L~~Lq~ 189 (331)
-|||.|+..+ +..+.|...+.++.+.|...++++|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ldfEkpi~ele~ki~el~~ 115 (762)
T PLN03229 64 YPWPADPDPNVKGGVLSYLSHFKPLKEKPKPVTLDFEKPLVDLEKKIVDVRK 115 (762)
T ss_pred CCCCCCCCCCcccchhhHhhccCCCCCCCCCCCcchhhHHHHHHHHHHHHHh
Confidence 4999888732 113346677888888888888888886
No 6
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=52.60 E-value=14 Score=29.67 Aligned_cols=56 Identities=29% Similarity=0.280 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhHhhhHhhhcCCCccccCCCcchhHHHHhhHHHHhhhhhhHHHHHHHHH
Q 020070 263 MLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSASIA 322 (331)
Q Consensus 263 ~~~k~L~~L~~lr~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~il~~s~~ 322 (331)
++.++|..|++|-+.-+++.. +- ..+ .+...++-..|+++-+.||.=+.|||++=+
T Consensus 2 aL~kEL~~Lr~IN~~ie~~~~-~L-~~a--~~~~~~v~~~~~~t~~LLd~w~~IlSQte~ 57 (78)
T PF08651_consen 2 ALEKELEQLRKINPVIEGLIE-TL-RSA--KSNMNRVQETVESTNTLLDKWIRILSQTEH 57 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888777743 11 111 255688888999999999999999998744
No 7
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=49.86 E-value=28 Score=36.28 Aligned_cols=25 Identities=12% Similarity=0.226 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHH
Q 020070 165 YPLPDVSELETKLSEQSKILLNLQQ 189 (331)
Q Consensus 165 ~~~p~v~eL~~qLqe~~~~L~~Lq~ 189 (331)
.+.|...+.++.+.|..+++++|+.
T Consensus 70 ~~~~~~l~fe~pi~ele~ki~el~~ 94 (431)
T PLN03230 70 KPKPVTLPFEKPIVDLENRIDEVRE 94 (431)
T ss_pred CCCCCccchhhHHHHHHHHHHHHHh
Confidence 4446788899999999999999887
No 8
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=49.71 E-value=1.2e+02 Score=29.99 Aligned_cols=107 Identities=12% Similarity=0.114 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcc--cccCCCCCCCcccccc
Q 020070 175 TKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIR--PWTHMMEVPQLHGFGP 252 (331)
Q Consensus 175 ~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~--~~c~r~~~P~Lh~~GP 252 (331)
..||..+.+|+..=++=+.+..+.-.+-..+.-.++-...-....|..++.+|..--+.-+. .|... -.-.+...+.
T Consensus 93 ~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~-~~~~~~~m~~ 171 (277)
T PF15003_consen 93 EALQSMNSHLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPN-FDENPSNMDK 171 (277)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccHHHHHH
Confidence 56677777777654444555543333323444555555555555666667777655444443 34444 2223355677
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHhhhHhhh
Q 020070 253 AANRLLEAYKMLLKFLGNLRNLRDSHAALA 282 (331)
Q Consensus 253 ~~q~V~q~l~~~~k~L~~L~~lr~s~~~~~ 282 (331)
+...+--.+..|-.+.+++-.+|+++..|-
T Consensus 172 aL~ki~~lvae~E~l~e~ilkwRe~~ke~~ 201 (277)
T PF15003_consen 172 ALAKIDALVAECEELAEQILKWREQQKEVS 201 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788899999999999999988774
No 9
>PRK10807 paraquat-inducible protein B; Provisional
Probab=49.10 E-value=2.6e+02 Score=29.84 Aligned_cols=67 Identities=18% Similarity=0.313 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHhhHhh----hHhhh
Q 020070 207 AEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDS----HAALA 282 (331)
Q Consensus 207 ~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh~~GP~~q~V~q~l~~~~k~L~~L~~lr~s----~~~~~ 282 (331)
..+.+.|+-++.++.+++..|. +-.|..+.+.+++..+.+.+++|+.+.++ =+|+-
T Consensus 472 ~~Lp~~L~~TL~~l~~~l~~~~--------------------~~s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P~aLi 531 (547)
T PRK10807 472 QQLPADMQKTLRELNRSMQGFQ--------------------PGSPAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALV 531 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--------------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 3444555555555555555443 45889999999999999999998877665 46888
Q ss_pred cCCCccccCCC
Q 020070 283 IGSSETVAGEP 293 (331)
Q Consensus 283 ~~s~~~~~~~~ 293 (331)
.|.....+.+|
T Consensus 532 ~g~~~~~~p~p 542 (547)
T PRK10807 532 FEAKDKKDPEP 542 (547)
T ss_pred cCCCCCCCCCC
Confidence 88765555443
No 10
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=43.36 E-value=1.4e+02 Score=26.98 Aligned_cols=105 Identities=13% Similarity=0.118 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCCcc--cccch
Q 020070 176 KLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLH--GFGPA 253 (331)
Q Consensus 176 qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh--~~GP~ 253 (331)
.|.+.++.-..|..+++.+...+.-.+.. ...++..+|-+|.-++.=..-++.-|+++.+.-.-.+|+|-+. .+|-.
T Consensus 10 Ll~ai~~~~~kL~~~~~~ipee~~~~~~~-~~~~d~~~~DvLayl~gW~~LlL~W~~~~~~G~~~~fp~~gykWn~lg~L 88 (166)
T PF08020_consen 10 LLEAIEKNYEKLISEIDSIPEEQKDTPFD-FGGRDRNPRDVLAYLYGWHELLLKWEEDEQAGEEVDFPAPGYKWNQLGEL 88 (166)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhcCccc-cccccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCChhhhhHH
Confidence 34444555555555666565322222211 1167788888888888777777888888888777777888776 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhHhhh
Q 020070 254 ANRLLEAYKMLLKFLGNLRNLRDSHAALA 282 (331)
Q Consensus 254 ~q~V~q~l~~~~k~L~~L~~lr~s~~~~~ 282 (331)
.++.++.+... .+=..++.+.++|..|.
T Consensus 89 n~~f~~~y~~~-sl~e~~~~l~~s~~~v~ 116 (166)
T PF08020_consen 89 NQSFYEKYQDT-SLEELKALLKESHQKVI 116 (166)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 99999977654 33334445566666664
No 11
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=42.05 E-value=2.1e+02 Score=24.04 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHhHHHHHHHHHHHhhhhhcccccCCCCCCCcccccch--HHHHHHHHHHHHHHHHHHH
Q 020070 216 HLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPA--ANRLLEAYKMLLKFLGNLR 272 (331)
Q Consensus 216 ~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh~~GP~--~q~V~q~l~~~~k~L~~L~ 272 (331)
.|.+..+....|...++ +..|+.. --..+....|. ...+.+.+..+-.+..++.
T Consensus 101 ~L~~~~~~~~~~~~~~~--l~~wl~~-~e~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 156 (213)
T cd00176 101 RLEEALDLQQFFRDADD--LEQWLEE-KEAALASEDLGKDLESVEELLKKHKELEEELE 156 (213)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHH-HHHHhcCcccCCCHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555554 6677665 22333332222 3444444555555555544
No 12
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=41.93 E-value=1e+02 Score=35.05 Aligned_cols=95 Identities=16% Similarity=0.334 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCCcccccch
Q 020070 174 ETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPA 253 (331)
Q Consensus 174 ~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh~~GP~ 253 (331)
=++|||++++....+.+| |.-.++. +|. +++| .---+=...||+ |-.
T Consensus 931 l~~lqe~ArrIAkVs~ec-----KlEide~-~Yv---~sFk--------------p~LMdvVy~W~~----------Gat 977 (1041)
T KOG0948|consen 931 LRQLQESARRIAKVSKEC-----KLEIDEE-DYV---ESFK--------------PELMDVVYAWAK----------GAT 977 (1041)
T ss_pred HHHHHHHHHHHHHHHHhh-----ccccCHH-HHH---HhcC--------------hHHHHHHHHHHc----------ccc
Confidence 478888888888877776 4333331 111 1122 222222345776 666
Q ss_pred HHHHHH--------HHHHHHHHHHHHHhhHhhhHhhhcCCCccccCCCcchhHHHHhhHHHHhhhhhhH
Q 020070 254 ANRLLE--------AYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDL 314 (331)
Q Consensus 254 ~q~V~q--------~l~~~~k~L~~L~~lr~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (331)
|..++. .+.++..+=+=|++|..+..+|++. .+=+--+.|...+.||+
T Consensus 978 F~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnt-------------eLe~Kf~~~~~~ikRDI 1033 (1041)
T KOG0948|consen 978 FAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNT-------------ELENKFEEAIKKIKRDI 1033 (1041)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcch-------------HHHHHHHHHHHHHhhce
Confidence 665554 3334444444467787777777551 23344566777888876
No 13
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=38.66 E-value=27 Score=27.51 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=15.4
Q ss_pred cccccchHHHHHHHHHHHHH
Q 020070 247 LHGFGPAANRLLEAYKMLLK 266 (331)
Q Consensus 247 Lh~~GP~~q~V~q~l~~~~k 266 (331)
..+-||++|||++.|+-+.+
T Consensus 41 VEGsGPlAerv~~ly~eyi~ 60 (64)
T PF14894_consen 41 VEGSGPLAERVYDLYNEYIE 60 (64)
T ss_dssp EE--SHHHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHH
Confidence 35789999999999988765
No 14
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=37.95 E-value=1.9e+02 Score=24.86 Aligned_cols=59 Identities=17% Similarity=0.249 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhhcCCCCCh-h----------------HHHHHHHHHHHHhHHHHHHHHHHHhhhh
Q 020070 175 TKLSEQSKILLNLQQKV-TDLASKHAYNPDE-D----------------YAEVESQLRAHLESFLETARTFNTIYTK 233 (331)
Q Consensus 175 ~qLqe~~~~L~~Lq~~~-~~l~~k~~~~p~~-d----------------~~~~~q~Lrl~lsdf~QLv~aF~~vY~~ 233 (331)
.+|...-++++++|+++ ..++.+...++.+ + -.+..+-+.-+.+.|-||.+.|-++-+.
T Consensus 19 s~L~s~lkKfkq~q~~I~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~~i~~~FKQLEt~LKnlnt~ 95 (107)
T PRK15365 19 MQLNHCLKKFHQIRAKVSQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQ 95 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67888888999999998 6666555444311 1 1233356667779999999999887654
No 15
>PF11155 DUF2935: Domain of unknown function (DUF2935); InterPro: IPR021328 This family of proteins with unknown function appears to be restricted to Firmicutes. ; PDB: 3D19_B 3DBY_P.
Probab=37.13 E-value=1.2e+02 Score=25.46 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhHhhhHhhhcCCCccccCCCcchhHHHHhhHHHHhhhhh
Q 020070 248 HGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNR 312 (331)
Q Consensus 248 h~~GP~~q~V~q~l~~~~k~L~~L~~lr~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~ 312 (331)
.+.++.++.|.+..+......+.+.+....--....+-.-.+..-|.-+.-++.|.+-.+..|+.
T Consensus 60 ~~~~~~~~~~~~l~~~~~~~~~~~~~Fk~~l~~~~~~~~i~~~l~P~l~~Hi~rEa~~yl~~L~~ 124 (124)
T PF11155_consen 60 VRTPQLVPALSQLNQEALEASQEFINFKKELLELILSCKIFSNLYPLLIDHIIREAEYYLRILNQ 124 (124)
T ss_dssp -CCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSTBSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHcC
Confidence 44455666666666655555555555544433332222223344478889999999998887763
No 16
>PHA03395 p10 fibrous body protein; Provisional
Probab=35.75 E-value=65 Score=26.84 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=27.7
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020070 165 YPLPDVSELETKLSEQSKILLNLQQKVTDLA 195 (331)
Q Consensus 165 ~~~p~v~eL~~qLqe~~~~L~~Lq~~~~~l~ 195 (331)
..+|+|.+|..||..+++.|..++.+++.+.
T Consensus 32 ~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~ 62 (87)
T PHA03395 32 ANLPDVTEINEKLDAQSASLDTISSAVDNIT 62 (87)
T ss_pred hcCCcHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3469999999999999999999999998765
No 17
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=35.51 E-value=1.5e+02 Score=22.80 Aligned_cols=50 Identities=26% Similarity=0.486 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccC
Q 020070 173 LETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTH 240 (331)
Q Consensus 173 L~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~ 240 (331)
+..++.|....+++|+..+..+ +.+.-.|++|-+-..+|+ |.=.+-.||-
T Consensus 3 l~~~f~eL~D~~~~L~~n~~~L----------------~~ihesL~~FNESFasfL--YGl~mna~cv 52 (58)
T PF08653_consen 3 LEPQFAELSDSMETLDKNMEQL----------------NQIHESLSDFNESFASFL--YGLNMNAWCV 52 (58)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 3456667777777777665433 455667778888888885 5666777775
No 18
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=35.43 E-value=3.2e+02 Score=24.29 Aligned_cols=63 Identities=19% Similarity=0.277 Sum_probs=45.1
Q ss_pred HHHhHHHHHHHHHHHhhhhhcccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHhhHhhh
Q 020070 215 AHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSH 278 (331)
Q Consensus 215 l~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh~~GP~~q~V~q~l~~~~k~L~~L~~lr~s~ 278 (331)
-.++.+++-+.+.++-|+ ++.+-.++...|..+=-++.|..+++.|..|..+|.+=.+-+|+.
T Consensus 59 ~~L~~~ae~I~~~L~yF~-~Ld~itr~Ln~p~~sV~~~~F~~~L~~LD~cl~Fl~~h~~fkea~ 121 (157)
T PF04136_consen 59 TRLEELAEEISEKLQYFE-ELDPITRRLNSPGSSVNSDSFKPMLSRLDECLEFLEEHPNFKEAE 121 (157)
T ss_pred HHHHHHHHHHHHHhHHHh-hHHHHHHHHcCCCCcccchHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 455677777777777664 444444444445555559999999999999999999866666553
No 19
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=33.95 E-value=4e+02 Score=24.95 Aligned_cols=44 Identities=16% Similarity=0.422 Sum_probs=32.3
Q ss_pred HHHHhhhhhcccccCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHhhHhhhHhh
Q 020070 226 TFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAAL 281 (331)
Q Consensus 226 aF~~vY~~El~~~c~r~~~P~Lh~~GP~~q~V~q~l~~~~k~L~~L~~lr~s~~~~ 281 (331)
.|..||+.|+..+ .|..++|-+.+..=..+|..|+..-+.....
T Consensus 190 ~~~~lf~~eL~k~------------~~~~~~i~~~~~~Q~~ll~~i~~~~~~~~~~ 233 (296)
T PF13949_consen 190 DFEALFEEELKKF------------DPLQNRIQQNLSKQEELLQEIQEANEEFAQS 233 (296)
T ss_dssp -HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888763 6788889888888888888777765555333
No 20
>PHA03155 hypothetical protein; Provisional
Probab=30.08 E-value=1.2e+02 Score=26.55 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=27.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 020070 165 YPLPDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPD 203 (331)
Q Consensus 165 ~~~p~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~ 203 (331)
.+.++|.||+.+|+..+-.=..|++++ +++.+|+
T Consensus 5 ~~~~tvEeLaaeL~kL~~ENK~LKkkl-----~~~~~p~ 38 (115)
T PHA03155 5 RACADVEELEKELQKLKIENKALKKKL-----LQHGNPE 38 (115)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH-----HccCCCC
Confidence 456789999999999998888999886 4556664
No 21
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=28.66 E-value=2.6e+02 Score=21.21 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhHhhhcCCCccccCCCcchhHHHHhhHHHHhhhhhhHHHHHHHHHHHhhccc
Q 020070 254 ANRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAGEPSSVTRIISECESALTFLNRDLSILSASIARERGEKV 329 (331)
Q Consensus 254 ~q~V~q~l~~~~k~L~~L~~lr~s~~~~~~~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~il~~s~~r~~~~~~ 329 (331)
++.+...+....+......+|...| .|+ ... +.++|+.-+..-++-|..|..++.|.+....
T Consensus 3 i~~L~~~i~~E~ki~~Gae~m~~~~-----~t~------~~~---~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 3 IEELQKKIDKELKIKEGAENMLQAY-----STD------KKK---VLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----CCH------HCH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----ccC------cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556667777788888888888877 111 111 6889999999999999999999999876543
No 22
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.52 E-value=5.1e+02 Score=24.47 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCCcccccchHHHHHHHHH--------HHHHHHHHHHhhHhh
Q 020070 206 YAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYK--------MLLKFLGNLRNLRDS 277 (331)
Q Consensus 206 ~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh~~GP~~q~V~q~l~--------~~~k~L~~L~~lr~s 277 (331)
.+..-..|+-.+++...-..+=...++++-+.|-.. -.+.|..+=.+..++..+.. .-.++++-+......
T Consensus 82 ~~~~~~~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~-vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~k 160 (246)
T cd07597 82 DSDTWGDINEGLSSLSKHFQLLSDLSEDEARAEEDG-VLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKK 160 (246)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 344456666666666666666677788888887776 44444443333333333332 333444444445555
Q ss_pred hHhhhcCCCccccCCCcch----hHHHHhhHHHHhhhhhhHHHH
Q 020070 278 HAALAIGSSETVAGEPSSV----TRIISECESALTFLNRDLSIL 317 (331)
Q Consensus 278 ~~~~~~~s~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~il 317 (331)
..++.+ . + ++.+..+ +.|+...+++..-+||++=|+
T Consensus 161 l~~l~~-~-~--~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~ 200 (246)
T cd07597 161 LESLRA-K-P--DVKGAEVDKLEASIIKDKESIANQLNRSWFIR 200 (246)
T ss_pred HHHhhc-C-C--CCchhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 555432 1 1 2333444 667779999999999998887
No 23
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=26.54 E-value=8.8e+02 Score=26.59 Aligned_cols=42 Identities=31% Similarity=0.396 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhhcCCCCCcCcchhcccCc-----hhhHHHHHHHHHhh
Q 020070 4 KQMEEIQKKLAMLNYPRANAPAQSLLFAG-----MERYSLLEWLFFKL 46 (331)
Q Consensus 4 ~~~~ev~~kL~~L~CP~legl~~sLLcPs-----~~Rl~ILeWl~~Ri 46 (331)
|-=+||..=||.|+|||+.-.- ++.-|+ ++=+..|-||-.-|
T Consensus 125 r~EeEV~~ilK~L~YPf~~siS-s~~a~gspH~WP~iL~mlhWlvdlI 171 (581)
T KOG0995|consen 125 RIEEEVVQILKNLKYPFLLSIS-SLQAAGSPHNWPHILGMLHWLVDLI 171 (581)
T ss_pred hHHHHHHHHHHhCCCCcccchh-hhccCCCCCccHHHHHHHHHHHHHH
Confidence 3347899999999999998776 544422 46689999998766
No 24
>PF15612 WHIM1: WSTF, HB1, Itc1p, MBD9 motif 1; PDB: 2Y9Z_B 2Y9Y_B.
Probab=26.41 E-value=69 Score=22.71 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=18.8
Q ss_pred CCCCcCcchhcccCchhhHHHHHHHHHhh
Q 020070 18 YPRANAPAQSLLFAGMERYSLLEWLFFKL 46 (331)
Q Consensus 18 CP~legl~~sLLcPs~~Rl~ILeWl~~Ri 46 (331)
.+.-.+-|..| +...|+.||.+||-.+
T Consensus 7 ~~l~~~~y~~L--~~~~kl~iL~~L~~~~ 33 (50)
T PF15612_consen 7 PPLETGEYYEL--SPEEKLEILRALCDQL 33 (50)
T ss_dssp CCCCCSTCCCS---HHHHHHHHHHHHHHH
T ss_pred HHHHcCCcccC--CHHHHHHHHHHHHHHH
Confidence 33444444444 8889999999999988
No 25
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=26.29 E-value=76 Score=33.62 Aligned_cols=66 Identities=23% Similarity=0.418 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCCccc
Q 020070 170 VSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQLHG 249 (331)
Q Consensus 170 v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~Lh~ 249 (331)
+.+..+.|.|....|..|+++++.+- +++.-..+ ....+.-..++|+.++++|+-+ +=+
T Consensus 339 a~~ar~~~de~~~~~k~l~~~i~~l~---------------~~~~~~~g-~~e~~~~~~~c~~~~~~~Y~Y~-----~c~ 397 (480)
T KOG2397|consen 339 ASEARNELDEAERKLKDLDEEIRELE---------------DELNGDFG-LLEFAALKGQCFDRELGEYTYT-----VCP 397 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHhhcccc-HHHHHHHhcceeeeccCcEEEE-----Ecc
Confidence 45667899999999999999875554 44444444 5566677789999999999987 556
Q ss_pred ccchHHH
Q 020070 250 FGPAANR 256 (331)
Q Consensus 250 ~GP~~q~ 256 (331)
++|+.|-
T Consensus 398 ~~~~tq~ 404 (480)
T KOG2397|consen 398 FKPVTQK 404 (480)
T ss_pred ccccccc
Confidence 6777764
No 26
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.76 E-value=1.5e+02 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=20.2
Q ss_pred hhHHHHhhhhhhHHHHHHHHHHHh
Q 020070 302 ECESALTFLNRDLSILSASIARER 325 (331)
Q Consensus 302 ~~~~~l~~~~~~~~il~~s~~r~~ 325 (331)
..++|..++++.+..|+.++....
T Consensus 91 ~~~eA~~~l~~~~~~l~~~~~~l~ 114 (140)
T PRK03947 91 DLDEAIEILDKRKEELEKALEKLE 114 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999988887653
No 27
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=25.26 E-value=2.5e+02 Score=22.83 Aligned_cols=43 Identities=9% Similarity=0.265 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhccCCCCchhhhccCCChhHHHHHHHHHHHHHHhhh
Q 020070 72 IQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLVEASI 117 (331)
Q Consensus 72 IQelakl~~eLmLC~~~D~dLIkG~as~~kQl~Fl~qLLDlV~s~~ 117 (331)
++++.---..=|+-..++.|-|+..++.+.|. ++|||++..-+
T Consensus 16 v~~ild~L~~~gvlt~~~~e~I~~~~t~~~qa---~~Lld~L~trG 58 (86)
T cd08323 16 TSYIMDHMISDGVLTLDEEEKVKSKATQKEKA---VMLINMILTKD 58 (86)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHcCCChHHHH---HHHHHHHHhcC
Confidence 33343333344677888999999999999998 67899997754
No 28
>PHA02047 phage lambda Rz1-like protein
Probab=23.88 E-value=3.9e+02 Score=22.86 Aligned_cols=53 Identities=19% Similarity=0.371 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCC
Q 020070 169 DVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVP 245 (331)
Q Consensus 169 ~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P 245 (331)
....++.||+-...++..+|+.|+.+..+ .++..+.++.+| ++-++|..+ |+|
T Consensus 35 ~a~~la~qLE~a~~r~~~~Q~~V~~l~~k--------ae~~t~Ei~~aL---------------~~n~~WaD~-PVP 87 (101)
T PHA02047 35 EAKRQTARLEALEVRYATLQRHVQAVEAR--------TNTQRQEVDRAL---------------DQNRPWADR-PVP 87 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH---------------HhCCCcccC-CCC
Confidence 35678899999999999999999888655 244445555554 245789998 887
No 29
>KOG3485 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.74 E-value=41 Score=27.81 Aligned_cols=16 Identities=13% Similarity=0.451 Sum_probs=13.8
Q ss_pred HHHHhhcCcccCCCCcc
Q 020070 142 EKQALIFSEECKLFPAD 158 (331)
Q Consensus 142 ~~lq~~lspec~~~P~D 158 (331)
.-++.++.| |-|||++
T Consensus 67 N~lekml~p-cg~wpp~ 82 (86)
T KOG3485|consen 67 NLLEKMLQP-CGPWPPE 82 (86)
T ss_pred cHHHHhhcc-cCCCCCc
Confidence 468889999 9999986
No 30
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=23.15 E-value=1.5e+02 Score=23.96 Aligned_cols=32 Identities=44% Similarity=0.604 Sum_probs=28.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020070 166 PLPDVSELETKLSEQSKILLNLQQKVTDLASK 197 (331)
Q Consensus 166 ~~p~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k 197 (331)
..|+|.++.+||.-+++.|..|+..|....+-
T Consensus 33 ~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~i 64 (75)
T PF05531_consen 33 NLPDVTELNKKLDAQSAQLTTLNTKVNEIQDI 64 (75)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998877544
No 31
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=22.53 E-value=5.9e+02 Score=23.16 Aligned_cols=51 Identities=22% Similarity=0.320 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Q 020070 169 DVSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKE 234 (331)
Q Consensus 169 ~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~E 234 (331)
.+.+++..++...+.+..|+..+.-+ ...++..+..+.+.+.+|.-+|+-.
T Consensus 3 ~f~~~~~~f~~~e~~~~kL~k~~k~y---------------~~a~~~l~~~~~~~~~~~~~ly~p~ 53 (216)
T cd07599 3 QFEELEKDFKSLEKSLKKLIEQSKAF---------------RDSWRSILTHQIAFAKEFAELYDPI 53 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 46678889999999999988876322 2456667788888888888888743
No 32
>PF03299 TF_AP-2: Transcription factor AP-2; InterPro: IPR013854 Activator protein-2 (AP-2) transcription factors constitute a family of closely related and evolutionarily conserved proteins that bind to the DNA consensus sequence GCCNNNGGC and stimulate target gene transcription [, ]. Four different isoforms of AP-2 have been identified in mammals, termed AP-2 alpha, beta, gamma and delta. Each family member shares a common structure, possessing a proline/glutamine-rich domain in the N-terminal region, which is responsible for transcriptional activation [], and a helix-span-helix domain in the C-terminal region, which mediates dimerisation and site-specific DNA binding []. The AP-2 family have been shown to be critical regulators of gene expression during embryogenesis. They regulate the development of facial prominence and limb buds, and are essential for cranial closure and development of the lens []; they have also been implicated in tumourigenesis. AP-2 protein expression levels have been found to affect cell transformation, tumour growth and metastasis, and may predict survival in some types of cancer [, ] This entry represents the C-terminal region of these proteins, including the helix-span-helix domain.
Probab=22.12 E-value=4.2e+02 Score=24.92 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhhhcccccCCCCCCCc
Q 020070 208 EVESQLRAHLESFLETARTFNTIYTKEIRPWTHMMEVPQL 247 (331)
Q Consensus 208 ~~~q~Lrl~lsdf~QLv~aF~~vY~~El~~~c~r~~~P~L 247 (331)
++....+.....|..++ .|..++...--|++++-|.|..
T Consensus 125 ~~~~~~~~~~~a~~~~~-~l~~~l~~~~~pl~~~~p~~~~ 163 (209)
T PF03299_consen 125 EVVIRKNMLLAAFQICK-ELSDLLSQDRPPLGGRRPKPSL 163 (209)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHcCcCCCcCCCCCCCCc
Confidence 44444445555554444 8888888888888876455554
No 33
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=22.06 E-value=1.3e+02 Score=29.56 Aligned_cols=62 Identities=24% Similarity=0.423 Sum_probs=36.5
Q ss_pred hcCCCCCcCcchhcccCchh-hHHHHHHHHHhhcCCCCCchhhcccCCcCCCChHHHhHHHHHHHHHHhccCC
Q 020070 15 MLNYPRANAPAQSLLFAGME-RYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITT 86 (331)
Q Consensus 15 ~L~CP~legl~~sLLcPs~~-Rl~ILeWl~~Ri~~~~~P~~q~~~~~~~~~~~~~d~rIQelakl~~eLmLC~ 86 (331)
.|+||++-.+.-- =-|..+ =-+||.||+.|+ .|.. +.-. .-+.++.|+--+.-++.++-...
T Consensus 2 ~LGypr~iSmenF-rtPNF~LVAeiL~WLv~ry----dP~~-~i~~----~i~tE~dRV~Fik~v~~~~~tKa 64 (267)
T PF10234_consen 2 ALGYPRLISMENF-RTPNFELVAEILRWLVKRY----DPDA-DIPG----DIDTEQDRVFFIKSVAEFMATKA 64 (267)
T ss_pred CCCCCCCCcHHHc-CCCChHHHHHHHHHHHHHc----CCCC-CCCC----cCCcHHHHHHHHHHHHHHHHHHh
Confidence 5899988876521 003332 248999999999 8876 2221 12444456665555555554433
No 34
>PRK14079 recF recombination protein F; Provisional
Probab=21.32 E-value=71 Score=31.55 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhccCCCCchhhhccCCChhHHHHHHHHHHHHH
Q 020070 71 RIQYLAEIAKFLGITTTIDTEAIQGHGSYEDRTEMLRLIVDLV 113 (331)
Q Consensus 71 rIQelakl~~eLmLC~~~D~dLIkG~as~~kQl~Fl~qLLDlV 113 (331)
+..++.++...+.+ .|+|.++|+| ++..|..|+|.++..+
T Consensus 101 ~~~~l~~~~~~v~~-~p~d~~li~~--~p~~RR~fLD~~l~~l 140 (349)
T PRK14079 101 SLRELARLPGAVLI-RPEDLELVLG--PPEGRRAYLDRLLSRL 140 (349)
T ss_pred CHHHHHhhhcEEEE-ecCchHhhhC--CHHHHHHHHHHHHHhc
Confidence 55677777766665 9999999998 7889999999998743
No 35
>PF10239 DUF2465: Protein of unknown function (DUF2465); InterPro: IPR018797 FAM98A, B and C are glycine-rich proteins found from worms to humans whose function is unknown.
Probab=20.89 E-value=8.5e+02 Score=24.35 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=48.2
Q ss_pred HHHHHHHhhhcCCCCC---cCcchhccc-CchhhHHHHHHHHH-----hhcCCCCCchhhcccCCcCCCChHHHhHHHHH
Q 020070 6 MEEIQKKLAMLNYPRA---NAPAQSLLF-AGMERYSLLEWLFF-----KLLGDKSPFSQQNLQGDAMDRDEETARIQYLA 76 (331)
Q Consensus 6 ~~ev~~kL~~L~CP~l---egl~~sLLc-Ps~~Rl~ILeWl~~-----Ri~~~~~P~~q~~~~~~~~~~~~~d~rIQela 76 (331)
..|+-.=|++|+|||- .|....-+. ++. |+.+|+||++ |++--+.|.-.+... .....-+|+|.
T Consensus 64 ~~Els~~L~El~CPy~~L~~G~~~~rl~~~~~-~l~LL~fL~sELqaarl~~~k~~~~~~~~~------~~~s~~~~~l~ 136 (318)
T PF10239_consen 64 LLELSGFLKELGCPYSALTSGDISDRLQSKED-RLLLLEFLCSELQAARLLAKKKPEEPEQEE------EKESEVAQELK 136 (318)
T ss_pred HHHHHHHHHhcCCCcHHHcCCcchhhhcCHHH-HHHHHHHHHHHHHHHHHHHhccCCcccccc------ccccHHHHHHH
Confidence 3577788999999964 555444333 544 9999999987 443333332222111 11334478999
Q ss_pred HHHHHhccCCC
Q 020070 77 EIAKFLGITTT 87 (331)
Q Consensus 77 kl~~eLmLC~~ 87 (331)
.++.-||+=.|
T Consensus 137 ~i~~~L~l~~p 147 (318)
T PF10239_consen 137 AICQALGLPKP 147 (318)
T ss_pred HHHHHhCCCCC
Confidence 99999999777
No 36
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=20.85 E-value=4.2e+02 Score=20.79 Aligned_cols=41 Identities=7% Similarity=0.026 Sum_probs=34.5
Q ss_pred CCCCcccccchHHHHHHHHHHHHHHHHHHHhhHhhhHhhhc
Q 020070 243 EVPQLHGFGPAANRLLEAYKMLLKFLGNLRNLRDSHAALAI 283 (331)
Q Consensus 243 ~~P~Lh~~GP~~q~V~q~l~~~~k~L~~L~~lr~s~~~~~~ 283 (331)
..+...+--+..+.-++.+.....+..-|.++|..|-+++.
T Consensus 31 ~~~~~~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~~~~ 71 (87)
T PF10496_consen 31 IRPKTKPKDEFLKEAYRILSHITSLRKFLKSIRKAYLSTSS 71 (87)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555777788889999999999999999999999999865
No 37
>PF13339 AATF-Che1: Apoptosis antagonizing transcription factor
Probab=20.15 E-value=52 Score=27.84 Aligned_cols=21 Identities=14% Similarity=0.427 Sum_probs=16.9
Q ss_pred hhhccCCChhHHHHHHHHHHHH
Q 020070 91 EAIQGHGSYEDRTEMLRLIVDL 112 (331)
Q Consensus 91 dLIkG~as~~kQl~Fl~qLLDl 112 (331)
|+-||. ..+.|+.+|+.||++
T Consensus 1 D~~KG~-aV~~Q~~lwd~lL~~ 21 (131)
T PF13339_consen 1 DAEKGK-AVKNQLKLWDRLLEL 21 (131)
T ss_pred CcHHHH-HHHHHHHHHHHHHHH
Confidence 455666 578999999999986
Done!