Query 020070
Match_columns 331
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 11:19:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2igp_A Retinoblastoma-associat 60.9 6.3 0.00021 32.6 3.4 41 3-45 69-115 (120)
2 4b6x_A AVRRPS4, avirulence pro 54.1 73 0.0025 25.3 8.2 63 170-236 24-86 (90)
3 2qjz_A Microtubule-associated 44.8 91 0.0031 25.8 7.9 21 34-55 6-26 (123)
4 3nmd_A CGMP dependent protein 38.8 33 0.0011 26.4 4.0 26 170-195 42-67 (72)
5 2ve7_A Kinetochore protein HEC 37.0 20 0.0007 33.8 3.1 42 3-46 67-114 (315)
6 3ghg_A Fibrinogen alpha chain; 36.8 77 0.0026 32.7 7.4 116 170-291 119-253 (562)
7 1wyo_A Protein EB3, microtubul 36.1 1.4E+02 0.0049 25.8 8.1 92 33-142 22-120 (159)
8 3kdq_A Uncharacterized conserv 31.7 2E+02 0.0069 24.6 8.3 56 177-232 13-69 (154)
9 2yy0_A C-MYC-binding protein; 21.7 97 0.0033 22.1 3.7 30 168-197 19-48 (53)
10 2r8u_A Microtubule-associated 20.5 2.5E+02 0.0085 26.3 7.3 40 74-115 77-117 (268)
No 1
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=60.90 E-value=6.3 Score=32.59 Aligned_cols=41 Identities=29% Similarity=0.429 Sum_probs=32.6
Q ss_pred hhHHHHHHHHhhhcCCCCCcCcchhccc-Cch-h----hHHHHHHHHHh
Q 020070 3 AKQMEEIQKKLAMLNYPRANAPAQSLLF-AGM-E----RYSLLEWLFFK 45 (331)
Q Consensus 3 ~~~~~ev~~kL~~L~CP~legl~~sLLc-Ps~-~----Rl~ILeWl~~R 45 (331)
++-.+||..-|+.|+|||. +-.|-|. ||- | =+.+|-||+--
T Consensus 69 ~~~eeev~~~lK~L~YP~~--isKS~L~a~g~pHsWp~~L~~L~WLvel 115 (120)
T 2igp_A 69 TKFEEEVPRIFKDLGYPFA--LSKSSMYTVGAPHTWPHIVAALVWLIDC 115 (120)
T ss_dssp TTHHHHHHHHHHHTTCCSC--CCHHHHHTTTSTTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHcCCCce--eCHHHhcCCCCCccHHHHHHHHHHHHHH
Confidence 4678999999999999996 7777666 654 3 58899999753
No 2
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=54.08 E-value=73 Score=25.32 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhhhhcc
Q 020070 170 VSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYTKEIR 236 (331)
Q Consensus 170 v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~~El~ 236 (331)
-.+|-..++.-+...++|.++..+- .--.|| ++.....+.|+-+=.|+..|+..|- ||.+|=|
T Consensus 24 ~~~lrq~I~DKQ~~i~~Lt~eLq~A--~~eaNp-aeIA~~~~~L~qAraDL~~l~r~~a-v~g~E~R 86 (90)
T 4b6x_A 24 GAALRQEIEDKQLMVNNLTDELQDA--IDEANP-AEIANTSQQLRHARADLADLQRRFA-VLRNEDR 86 (90)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH--HHTTCH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH--HHccCH-HHHHhHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Confidence 3588888888899999999876443 223455 3566777999999999999999984 6776643
No 3
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A
Probab=44.82 E-value=91 Score=25.82 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHhhcCCCCCchh
Q 020070 34 ERYSLLEWLFFKLLGDKSPFSQ 55 (331)
Q Consensus 34 ~Rl~ILeWl~~Ri~~~~~P~~q 55 (331)
-|-+||+||=.-+ |...|.+.
T Consensus 6 sr~ElL~WIN~~L-~~~~~kiE 26 (123)
T 2qjz_A 6 SRHDMLAWINESL-QLNLTKIE 26 (123)
T ss_dssp CHHHHHHHHHHHH-TCCCCCGG
T ss_pred cHHHHHHHHHHHH-CCCCchHH
Confidence 4889999996554 77777773
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.76 E-value=33 Score=26.44 Aligned_cols=26 Identities=23% Similarity=0.465 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020070 170 VSELETKLSEQSKILLNLQQKVTDLA 195 (331)
Q Consensus 170 v~eL~~qLqe~~~~L~~Lq~~~~~l~ 195 (331)
|.+++.+|++..+.+.+||.+||.|.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66889999999999999999998773
No 5
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.00 E-value=20 Score=33.77 Aligned_cols=42 Identities=29% Similarity=0.441 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhhhcCCCCCcCcchhccc-Cch-h----hHHHHHHHHHhh
Q 020070 3 AKQMEEIQKKLAMLNYPRANAPAQSLLF-AGM-E----RYSLLEWLFFKL 46 (331)
Q Consensus 3 ~~~~~ev~~kL~~L~CP~legl~~sLLc-Ps~-~----Rl~ILeWl~~Ri 46 (331)
+|-.+||..-|+.|+|||. +-.|-|. ||- | =+.+|-||.--+
T Consensus 67 ~k~eeev~~~lK~L~YP~~--isKS~L~a~g~pHsWp~~Lg~L~WLvel~ 114 (315)
T 2ve7_A 67 TKFEEEVPRIFKDLGYPFA--LSKSSMYTVGAPHTWPHIVAALVWLIDCI 114 (315)
T ss_dssp SCHHHHHHHHHHHTTCSSC--CCHHHHHTTTSTTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHcCCCce--eCHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence 4567899999999999996 7788776 654 4 589999998644
No 6
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.81 E-value=77 Score=32.73 Aligned_cols=116 Identities=15% Similarity=0.226 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH-------------HHHhHHHHHHHHHHHhhhhhcc
Q 020070 170 VSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLR-------------AHLESFLETARTFNTIYTKEIR 236 (331)
Q Consensus 170 v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lr-------------l~lsdf~QLv~aF~~vY~~El~ 236 (331)
+..|..+++.+.+.|..||..++++..|..-- -+.++.|+| +=+.|...+...-.||-.++|.
T Consensus 119 IqyLKekVdnQlsnIrvLQsnLedq~~kIQRL----EvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~a~dL~ 194 (562)
T 3ghg_A 119 IEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL----EVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVIAKDLL 194 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHhhcccC
Confidence 45666777777777777777777666431100 022224554 3466888888888999999998
Q ss_pred c--ccCCCCCCCcccccchH----HHHHHHHHHHHHHHHHHHhhHhhhHhhhcCCCccccC
Q 020070 237 P--WTHMMEVPQLHGFGPAA----NRLLEAYKMLLKFLGNLRNLRDSHAALAIGSSETVAG 291 (331)
Q Consensus 237 ~--~c~r~~~P~Lh~~GP~~----q~V~q~l~~~~k~L~~L~~lr~s~~~~~~~s~~~~~~ 291 (331)
+ -.+-+|+-.+.|+...+ +.-.+.=....++|.++++|+=.-|.- |++..+++
T Consensus 195 p~~~~q~Lp~lKmrP~kD~Vp~~fKsq~q~~~~e~kal~ei~Qm~mvLE~~--g~~~~~~g 253 (562)
T 3ghg_A 195 PSRDRQHLPLIKMKPVPDLVPGNFKSQLQKVPPEWKALTDMPQMRMELERP--GGNEITRG 253 (562)
T ss_dssp CSCCCC-------------------------------------------------------
T ss_pred CccccccchhcccccccccCchhhhhhccccCHHHHHhhhhhcEEEEEEec--CCCCCCCC
Confidence 8 44444444555555544 333344455677899999988766654 33444444
No 7
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.14 E-value=1.4e+02 Score=25.80 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=49.6
Q ss_pred hhhHHHHHHHHHhhcCCCCCchhhcccCCcCCCChHHHhHHHHHHHHHHhccCCCCchhhh--c-cCCChhHHHHHHHHH
Q 020070 33 MERYSLLEWLFFKLLGDKSPFSQQNLQGDAMDRDEETARIQYLAEIAKFLGITTTIDTEAI--Q-GHGSYEDRTEMLRLI 109 (331)
Q Consensus 33 ~~Rl~ILeWl~~Ri~~~~~P~~q~~~~~~~~~~~~~d~rIQelakl~~eLmLC~~~D~dLI--k-G~as~~kQl~Fl~qL 109 (331)
.-|-+||+||=.-+ |...|.+.+--+ + |-+++.+-...|+..-+- + .....-+.++=++.|
T Consensus 22 ~sr~ElL~WIN~~L-~~~~~kiE~L~~-----G----------aayCQLmd~L~PgsV~l~KVkf~a~~e~e~~~N~k~l 85 (159)
T 1wyo_A 22 LSRHDMLAWVNDSL-HLNYTKIEQLCS-----G----------AAYCQFMDMLFPGCVHLRKVKFQAKLEHEYIHNFKVL 85 (159)
T ss_dssp CCHHHHHHHHHHHS-CCCCSSGGGGGG-----C----------HHHHHHHHHHSTTSSCTTSCCTTCCSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-CCCCchhhhcCc-----c----------HHHHHHHHHHccCCCcHhhhccCCCChHHHHHHHHHH
Confidence 45899999997655 777777732221 1 233444444455555532 3 334444555555556
Q ss_pred HHHHHhhhcCCCCCcchHHHhh----hhHHHHHHHHH
Q 020070 110 VDLVEASIYADNPEWSIDEQVA----KDIQLIDSIAE 142 (331)
Q Consensus 110 LDlV~s~~~~~~~~~s~~eq~~----~n~~Ll~~l~~ 142 (331)
.+.....++. ...++++-.. +|-.|+.-|-.
T Consensus 86 Q~af~k~gV~--k~ipV~kLvkgk~qdNlEFlqWfk~ 120 (159)
T 1wyo_A 86 QAAFKKMGVD--KIIPVEKLVKGKFQDNFEFIQWFKK 120 (159)
T ss_dssp HHHHHHHTCC--CCCCHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHcCCC--CccCHHHHhcCCchhHHHHHHHHHH
Confidence 6666555543 4455554443 35555555543
No 8
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=31.66 E-value=2e+02 Score=24.59 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-hhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 020070 177 LSEQSKILLNLQQKVTDLA-SKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIYT 232 (331)
Q Consensus 177 Lqe~~~~L~~Lq~~~~~l~-~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY~ 232 (331)
=...++++++|++....-+ ..-|..|.+|..++-..+..++.+|..||..-|....
T Consensus 13 Radl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~~IN~TN~ 69 (154)
T 3kdq_A 13 RVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTNS 69 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456677777777765555 3456678889999999999999999999999887764
No 9
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.74 E-value=97 Score=22.14 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 020070 168 PDVSELETKLSEQSKILLNLQQKVTDLASK 197 (331)
Q Consensus 168 p~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k 197 (331)
.||..|..++++.+++.+.|+++++++.++
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999999999999888777544
No 10
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=20.55 E-value=2.5e+02 Score=26.30 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCCchh-hhccCCChhHHHHHHHHHHHHHHh
Q 020070 74 YLAEIAKFLGITTTIDTE-AIQGHGSYEDRTEMLRLIVDLVEA 115 (331)
Q Consensus 74 elakl~~eLmLC~~~D~d-LIkG~as~~kQl~Fl~qLLDlV~s 115 (331)
.|-...+.+++-.+.|.| ||||+ ++..++|+.=+=....+
T Consensus 77 ~LQ~~F~k~~I~k~ipV~kLvkgk--~qDNlEFlqWfkkf~d~ 117 (268)
T 2r8u_A 77 ILQAGFKRMGVDKIIPVDKLVKGK--FQDNFEFVQWFKKFFDA 117 (268)
T ss_dssp HHHHHHHHTTCCCCCCHHHHTTTC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHhccC--chhHHHHHHHHHHHHHH
Confidence 455666688888888876 78887 68888887655444433
Done!