Query 020070
Match_columns 331
No_of_seqs 46 out of 48
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 11:19:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y74a1 a.194.1.1 (A:17-73) Li 49.9 35 0.0026 23.5 7.4 50 173-233 3-53 (57)
2 d1p1ja1 c.2.1.3 (A:9-322,A:438 35.9 3.8 0.00028 38.5 0.2 25 26-50 315-340 (410)
3 d1urua_ a.238.1.1 (A:) Amphiph 24.7 74 0.0054 24.3 6.3 55 168-222 104-159 (217)
4 d1rm8a_ d.92.1.11 (A:) Matrix 23.3 16 0.0012 27.2 1.8 26 69-94 116-141 (169)
5 d1qiba_ d.92.1.11 (A:) Gelatin 22.8 17 0.0012 27.1 1.8 22 74-95 113-134 (161)
6 d1hy7a_ d.92.1.11 (A:) Stromel 22.6 17 0.0012 27.4 1.8 23 72-94 115-137 (168)
7 d1y93a1 d.92.1.11 (A:106-263) 21.0 19 0.0014 26.8 1.8 22 73-94 110-131 (158)
8 d1xuca1 d.92.1.11 (A:104-272) 20.9 19 0.0014 27.2 1.8 25 70-94 113-137 (169)
9 d2ovxa1 d.92.1.11 (A:110-443) 20.2 20 0.0015 26.8 1.8 26 70-95 111-136 (159)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 20.0 1.5E+02 0.011 21.6 7.1 43 170-231 3-45 (133)
No 1
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.90 E-value=35 Score=23.47 Aligned_cols=50 Identities=22% Similarity=0.365 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHH-HHHHhhhh
Q 020070 173 LETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETAR-TFNTIYTK 233 (331)
Q Consensus 173 L~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~-aF~~vY~~ 233 (331)
|++-.+..-.-|+.||. .|.-| ..++..-=+..-|||-.-++ -|-|||++
T Consensus 3 L~rDv~RaieLle~LQ~--------~gevp---~~KL~aLqkVLqSdF~~avREVYehvyeT 53 (57)
T d1y74a1 3 LERDVSRAVELLERLQR--------SGELP---PQKLQALQRVLQSRFCSAIREVYEQLYDT 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHH--------HTCSC---HHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH--------cCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555666667777775 45555 14444444577799998886 58888875
No 2
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.94 E-value=3.8 Score=38.50 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.5
Q ss_pred hhccc-CchhhHHHHHHHHHhhcCCC
Q 020070 26 QSLLF-AGMERYSLLEWLFFKLLGDK 50 (331)
Q Consensus 26 ~sLLc-Ps~~Rl~ILeWl~~Ri~~~~ 50 (331)
++||- |=+.||-+|-|+|+||+|.+
T Consensus 315 dslLA~pli~dL~vl~e~~trI~~~~ 340 (410)
T d1p1ja1 315 DSLLATPLIIDLLVMTEFCTRVSYKK 340 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTEEEEE
T ss_pred hhhhhhHHHHHHHHHHHhheeeEeec
Confidence 35778 88999999999999998764
No 3
>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=24.71 E-value=74 Score=24.25 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHHhHHHH
Q 020070 168 PDVSELETKLSEQSKILLNLQQKVTDLASKHAYNPD-EDYAEVESQLRAHLESFLE 222 (331)
Q Consensus 168 p~v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~-~d~~~~~q~Lrl~lsdf~Q 222 (331)
+++.+.-++........+..+.+++.+..+..-+.+ .....++.++..+-..|..
T Consensus 104 ~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~~~~~~~l~~~e~~~~~a~~~fe~ 159 (217)
T d1urua_ 104 PEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEI 159 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBTTBCCTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHH
Confidence 344455455555555555555555545433332221 1333344444444444443
No 4
>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.28 E-value=16 Score=27.19 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHhHHHHHHHHHHhccCCCCchhhhc
Q 020070 69 TARIQYLAEIAKFLGITTTIDTEAIQ 94 (331)
Q Consensus 69 d~rIQelakl~~eLmLC~~~D~dLIk 94 (331)
+.+-=-+=||||-|||=|++|.+-|+
T Consensus 116 ~~~~v~~HEiGHaLGL~H~~~~~svM 141 (169)
T d1rm8a_ 116 DLFLVAVHELGHALGLEHSNDPTAIM 141 (169)
T ss_dssp EHHHHHHHHHHHHHTCCCCSCTTSTT
T ss_pred hhhhhhhhhhhhhhcCCCCCCCCcee
Confidence 33444567999999999999977654
No 5
>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.81 E-value=17 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.0
Q ss_pred HHHHHHHHhccCCCCchhhhcc
Q 020070 74 YLAEIAKFLGITTTIDTEAIQG 95 (331)
Q Consensus 74 elakl~~eLmLC~~~D~dLIkG 95 (331)
-+=||||-|||=|++|.+-|+-
T Consensus 113 ~~HEiGHaLGL~H~~~~~svM~ 134 (161)
T d1qiba_ 113 AAHEFGHAMGLEHSQDPGALMA 134 (161)
T ss_dssp HHHHHHHHHTCCCCSCTTSTTS
T ss_pred eeecccccccCCCCCCCCCeec
Confidence 5679999999999999887764
No 6
>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}
Probab=22.62 E-value=17 Score=27.39 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhccCCCCchhhhc
Q 020070 72 IQYLAEIAKFLGITTTIDTEAIQ 94 (331)
Q Consensus 72 IQelakl~~eLmLC~~~D~dLIk 94 (331)
-=-+=||||-|||=|+.|.+-|.
T Consensus 115 ~v~~HEiGHALGL~H~~~~~svM 137 (168)
T d1hy7a_ 115 LVAAHEIGHSLGLFHSANTEALM 137 (168)
T ss_dssp HHHHHHHHHHHTBCCCSCTTSTT
T ss_pred eeeHhhhccccCCCcCCCCCcee
Confidence 34577999999999999988776
No 7
>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.00 E-value=19 Score=26.77 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHHHHHhccCCCCchhhhc
Q 020070 73 QYLAEIAKFLGITTTIDTEAIQ 94 (331)
Q Consensus 73 Qelakl~~eLmLC~~~D~dLIk 94 (331)
=-+=||||-|||=|++|.+-|+
T Consensus 110 ~~~HEiGHaLGL~H~~d~~svM 131 (158)
T d1y93a1 110 TAVHEIGHSLGLGHSSDPKAVM 131 (158)
T ss_dssp HHHHHHHHHTTCCCCSCTTSTT
T ss_pred HhhhhhhhhcCCCCCCCCCccc
Confidence 3466999999999999977555
No 8
>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.89 E-value=19 Score=27.23 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHHhccCCCCchhhhc
Q 020070 70 ARIQYLAEIAKFLGITTTIDTEAIQ 94 (331)
Q Consensus 70 ~rIQelakl~~eLmLC~~~D~dLIk 94 (331)
..-=-+=||||-|||=|+.|.+-|.
T Consensus 113 ~~~v~~HEiGHaLGL~H~~d~~svM 137 (169)
T d1xuca1 113 LFLVAAHEFGHSLGLDHSKDPGALM 137 (169)
T ss_dssp HHHHHHHHHHHHHTBCCCSCTTSTT
T ss_pred eeeehhhhhccccCCCCCCCCCcee
Confidence 3344678999999999999977654
No 9
>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.25 E-value=20 Score=26.80 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHhccCCCCchhhhcc
Q 020070 70 ARIQYLAEIAKFLGITTTIDTEAIQG 95 (331)
Q Consensus 70 ~rIQelakl~~eLmLC~~~D~dLIkG 95 (331)
.+---+=||||-|||=|+.|.+-|+-
T Consensus 111 ~~~v~~HElGHaLGL~H~~~~~sVM~ 136 (159)
T d2ovxa1 111 LFLVAAHQFGHALGLDHSSVPEALMY 136 (159)
T ss_dssp HHHHHHHHHHHHTTCCCCSCTTSTTS
T ss_pred eeeeehhhhcccccCCCCCCCCceec
Confidence 33446779999999999999876653
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=20.00 E-value=1.5e+02 Score=21.61 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 020070 170 VSELETKLSEQSKILLNLQQKVTDLASKHAYNPDEDYAEVESQLRAHLESFLETARTFNTIY 231 (331)
Q Consensus 170 v~eL~~qLqe~~~~L~~Lq~~~~~l~~k~~~~p~~d~~~~~q~Lrl~lsdf~QLv~aF~~vY 231 (331)
..+|..+++...+.++.|++.. ..|+..+++|.++..+-..+-
T Consensus 3 L~eL~~~~~~l~~~l~~l~~~i-------------------~~l~~~~~e~~~~~~~L~~l~ 45 (133)
T d1fxkc_ 3 LAEIVAQLNIYQSQVELIQQQM-------------------EAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhh
Confidence 4566777777777777777654 566677778877777766554
Done!